WorldWideScience

Sample records for modeling sim system

  1. Understanding IEC standard wind turbine models using SimPowerSystems

    DEFF Research Database (Denmark)

    Das, Kaushik; Hansen, Anca Daniela; Sørensen, Poul Ejnar

    2016-01-01

    This article describes and exemplifies the IEC 61400-27 generic wind turbine models through an interactive multimedia learning environment - Matlab SimPowerSystems. The article aims help engineers with different backgrounds to get a better understanding of wind turbine dynamics and control...... by easily conducting different study simulations in the SimPowerSystems platform ....

  2. A Look at the U.S. Energy System – A Strategic Impact Model (2050 SIM)

    Energy Technology Data Exchange (ETDEWEB)

    Layne Pincock; John W. Collins

    2011-06-01

    The United States (U.S.) energy infrastructure is among the most reliable, accessible, and economical in the world. On the other hand, it is also excessively reliant on foreign energy sources, experiences high volatility in energy prices, does not always practice good stewardship of finite indigenous energy resources, and emits significant quantities of greenhouse gases. The U.S. Department of Energy is conducting research and development on advanced nuclear reactor concepts and technologies, including High Temperature Gas Reactor (HTGR) technologies, directed at helping the United States meet its current and future energy challenges. This paper discusses the systematic approach used to develop the 2050 Strategic Impact Model (2050 SIM), which allows the user to analyze and depict the benefits of various energy sources in meeting the energy demand. It also provides an overall systems understanding of the tradeoffs between building and using HTGRs versus other existing technologies for providing energy (heat and electricity) to various energy-use sectors in the United States. This paper also provides the assumptions used in the model, the rational for the methodology, and the references for the source documentation and source data used in developing 2050 SIM.

  3. Electrotechnical systems simulation with Simulink and SimPowerSystems

    CERN Document Server

    Perelmuter, Viktor

    2012-01-01

    Filling a gap in the literature, Electrotechnical Systems: Simulation with Simulink® and SimPowerSystems™ explains how to simulate complicated electrical systems more easily using SimPowerSystems™ blocks. It gives a comprehensive overview of the powerful SimPowerSystems toolbox and demonstrates how it can be used to create and investigate models of both classic and modern electrotechnical systems.Build from Circuit Elements and Blocks to System ModelsBuilding from simple to more complex topics, the book helps readers better understand the principles, features, and detailed functions of various

  4. Sequencing Information Management System (SIMS). Final report

    Energy Technology Data Exchange (ETDEWEB)

    Fields, C.

    1996-02-15

    A feasibility study to develop a requirements analysis and functional specification for a data management system for large-scale DNA sequencing laboratories resulted in a functional specification for a Sequencing Information Management System (SIMS). This document reports the results of this feasibility study, and includes a functional specification for a SIMS relational schema. The SIMS is an integrated information management system that supports data acquisition, management, analysis, and distribution for DNA sequencing laboratories. The SIMS provides ad hoc query access to information on the sequencing process and its results, and partially automates the transfer of data between laboratory instruments, analysis programs, technical personnel, and managers. The SIMS user interfaces are designed for use by laboratory technicians, laboratory managers, and scientists. The SIMS is designed to run in a heterogeneous, multiplatform environment in a client/server mode. The SIMS communicates with external computational and data resources via the internet.

  5. Performance Assessment of a Low-Level Radioactive Waste Disposal Site using GoldSim Integrated Systems Model

    Science.gov (United States)

    Merrell, G.; Singh, A.; Tauxe, J.; Perona, R.; Dornsife, W.; grisak, G. E.; Holt, R. M.

    2011-12-01

    Texas Commission on Environmental Quality has approved licenses for four landfills at the Waste Control Specialists (WCS) site located in Andrews County, West Texas. The site includes a hazardous waste landfill and three landfills for radioactive waste. An updated performance assessment is necessary prior to acceptance of waste at the landfills. The updated performance assessment a) provides for more realistic and flexible dose modeling capabilities, b) addresses all plausible release and accident scenarios as they relate to the performance objectives, c) includes impact of climate and hydrologic scenarios that may impact long-term performance of the landfill, d) addresses impact of cover naturalization and degradation on the landfill, and e) incorporates uncertainty and sensitivity analysis for critical parameters. For the updated performance assessment, WCS has developed an integrated systems level performance assessment model using the GoldSim platform. GoldSim serves as a model for integrating all of the major components of a performance assessment, which include the radionuclide source term, facility design, environmental transport pathways, exposure scenarios, and radiological doses. Unlike many computer models that are based on first principles, GoldSim is a systems level model that can be used to integrate and abstract more complex sub-models into one system. This can then be used to assess the results into a unified model of the disposal system and environment. In this particular application, the GoldSim model consists of a) hydrogeologic model that simulates flow and transport through the Dockum geologic unit that underlies all of the waste facilities, b) waste cells that represent the containment unit and simulate degradation of waste forms, radionuclide leaching, and partitioning into the liquid and vapor phase within the waste unit, c) a cover system model that simulates upward diffusive transport from the underground repository to the atmosphere. In

  6. Hydraulic Arm Modeling via Matlab SimHydraulics

    OpenAIRE

    Věchet, Stanislav; Krejsa, Jiří

    2009-01-01

    System modeling is a vital tool for cost reduction and design process speed up in most engineering fields. The paper is focused on modeling of hydraulic arm as a part of intelligent prosthesis project, in the form of 2DOF open kinematic chain. The arm model combines mechanical, hydraulic and electric subsystems and uses Matlab as modeling tool. SimMechanics Matlab extension is used for mechanical part modeling, SimHydraulics toolbox is used for modeling of hydraulic circuit used for actuating...

  7. SIMS(DAIRY): a modelling framework to identify sustainable dairy farms in the UK. Framework description and test for organic systems and N fertiliser optimisation.

    Science.gov (United States)

    Del Prado, A; Misselbrook, T; Chadwick, D; Hopkins, A; Dewhurst, R J; Davison, P; Butler, A; Schröder, J; Scholefield, D

    2011-09-01

    Multiple demands are placed on farming systems today. Society, national legislation and market forces seek what could be seen as conflicting outcomes from our agricultural systems, e.g. food quality, affordable prices, a healthy environmental, consideration of animal welfare, biodiversity etc., Many of these demands, or desirable outcomes, are interrelated, so reaching one goal may often compromise another and, importantly, pose a risk to the economic viability of the farm. SIMS(DAIRY), a farm-scale model, was used to explore this complexity for dairy farm systems. SIMS(DAIRY) integrates existing approaches to simulate the effect of interactions between farm management, climate and soil characteristics on losses of nitrogen, phosphorus and carbon. The effects on farm profitability and attributes of biodiversity, milk quality, soil quality and animal welfare are also included. SIMS(DAIRY) can also be used to optimise fertiliser N. In this paper we discuss some limitations and strengths of using SIMS(DAIRY) compared to other modelling approaches and propose some potential improvements. Using the model we evaluated the sustainability of organic dairy systems compared with conventional dairy farms under non-optimised and optimised fertiliser N use. Model outputs showed for example, that organic dairy systems based on grass-clover swards and maize silage resulted in much smaller total GHG emissions per l of milk and slightly smaller losses of NO(3) leaching and NO(x) emissions per l of milk compared with the grassland/maize-based conventional systems. These differences were essentially because the conventional systems rely on indirect energy use for 'fixing' N compared with biological N fixation for the organic systems. SIMS(DAIRY) runs also showed some other potential benefits from the organic systems compared with conventional systems in terms of financial performance and soil quality and biodiversity scores. Optimisation of fertiliser N timings and rates showed a

  8. SimB16: modeling induced immune system response against B16-melanoma.

    Directory of Open Access Journals (Sweden)

    Francesco Pappalardo

    Full Text Available Immunological therapy of progressive tumors requires not only activation and expansion of tumor specific cytotoxic T lymphocytes (CTLs, but also an efficient effector phase including migration of CTLs in the tumor tissue followed by conjugation and killing of target cells. We report the application of an agent-based model to recapitulate both the effect of a specific immunotherapy strategy against B16-melanoma in mice and the tumor progression in a generic tissue section. A comparison of the in silico results with the in vivo experiments shows excellent agreement. We therefore use the model to predict a critical role for CD137 expression on tumor vessel endothelium for successful therapy and other mechanistic aspects. Experimental results are fully compatible with the model predictions. The biologically oriented in silico model derived in this work will be used to predict treatment failure or success in other pre-clinical conditions eventually leading new promising in vivo experiments.

  9. OpenSimRoot: widening the scope and application of root architectural models.

    Science.gov (United States)

    Postma, Johannes A; Kuppe, Christian; Owen, Markus R; Mellor, Nathan; Griffiths, Marcus; Bennett, Malcolm J; Lynch, Jonathan P; Watt, Michelle

    2017-08-01

    OpenSimRoot is an open-source, functional-structural plant model and mathematical description of root growth and function. We describe OpenSimRoot and its functionality to broaden the benefits of root modeling to the plant science community. OpenSimRoot is an extended version of SimRoot, established to simulate root system architecture, nutrient acquisition and plant growth. OpenSimRoot has a plugin, modular infrastructure, coupling single plant and crop stands to soil nutrient and water transport models. It estimates the value of root traits for water and nutrient acquisition in environments and plant species. The flexible OpenSimRoot design allows upscaling from root anatomy to plant community to estimate the following: resource costs of developmental and anatomical traits; trait synergisms; and (interspecies) root competition. OpenSimRoot can model three-dimensional images from magnetic resonance imaging (MRI) and X-ray computed tomography (CT) of roots in soil. New modules include: soil water-dependent water uptake and xylem flow; tiller formation; evapotranspiration; simultaneous simulation of mobile solutes; mesh refinement; and root growth plasticity. OpenSimRoot integrates plant phenotypic data with environmental metadata to support experimental designs and to gain a mechanistic understanding at system scales. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

  10. 基于20-sim软件的离散控制系统设计与研究%Modeling and Simulation of Discrete-Time Control Systems Based on 20-sim

    Institute of Scientific and Technical Information of China (English)

    陈文哲; 尤元红; 范满红

    2014-01-01

    介绍了机电一体化设计软件20-sim的主要功能、编程环境和仿真方法。针对一种典型的机电一体化系统,基于20-sim软件建立了控制系统模型。利用20-sim软件中的采样开关和零阶保持器(ZOH)等模块,实现了离散时间控制系统,并对其进行了仿真。结果显示,该方法直观简便,为离散时间系统的设计与应用提供了新的思路。%The main functions,programming interfaces and simulation methods of 20-sim software are briefly intro-duced in this paper.Considering a kind of typical mechatronic system,we developed control system model based on 20-sim software.The discrete control systems are designed and simulated by using the sample switch model and ZOH model in the library of 20-sim.Therefore,the results show the high efficiency of this method and it provides a new way in the field of mechatronic systems.

  11. SIMS: The SLAC Industrial Measurement System

    Energy Technology Data Exchange (ETDEWEB)

    Bell, B.; /SLAC

    2005-08-12

    The development of electronic sensors and of small powerful computers, and their integration together have led to the development of what has come to be known as Industrial Measurement Technology (IMT). Industrial Measurement Systems feature one or more electronic sensors and a computer with powerful software. The software has three essential components: data collection, data reduction and data analysis. In the field of industrial surveying, the IMT system is the automated theodolite system, but other systems such as the laser tracker are on the horizon.

  12. MicroSim: Modeling the Swedish Population

    CERN Document Server

    Brouwers, Lisa; Cakici, Baki; Mäkilä, Kalle; Saretok, Paul

    2009-01-01

    This article presents a unique, large-scale and spatially explicit microsimulation model that uses official anonymized register data collected from all individuals living in Sweden. Individuals are connected to households and workplaces and represent crucial links in the Swedish social contact network. This enables significant policy experiments in the domain of epidemic outbreaks. Development of the model started in 2004 at the Swedish Institute for Infectious Disease Control (SMI) in Solna, Sweden with the goal of creating a tool for testing the effects of intervention policies. These interventions include mass vaccination, targeted vaccination, isolation and social distancing. The model was initially designed for simulating smallpox outbreaks. In 2006, it was modified to support simulations of pandemic influenza. All nine millions members of the Swedish population are represented in the model. This article is a technical description of the simulation model; the input data, the simulation engine and the bas...

  13. SIMS Prototype System 4: design data brochure

    Energy Technology Data Exchange (ETDEWEB)

    1978-08-01

    A pre-package prototype unit is described having domestic hot water and room solar heating capability that uses air as the collector fluid. This system is designed to be used with a small single-family dwelling where a roof mounted collector array is not feasible. The prototype unit is an assembly containing 203 square feet of effective collector surface with 113 cubic feet of rock storage. The design of structure and storage is modular, which permits expansion and reduction of the collector array and storage bed in 68 square feet and 37 cubic feet increments respectively. The system is designed to be transportable. This permitted assembly and certification testing in one area and installation in another area without tear down and reassembly. Design, installation, operation, performance and maintenance of this system are described.

  14. SIM_EXPLORE: Software for Directed Exploration of Complex Systems

    Science.gov (United States)

    Burl, Michael; Wang, Esther; Enke, Brian; Merline, William J.

    2013-01-01

    Physics-based numerical simulation codes are widely used in science and engineering to model complex systems that would be infeasible to study otherwise. While such codes may provide the highest- fidelity representation of system behavior, they are often so slow to run that insight into the system is limited. Trying to understand the effects of inputs on outputs by conducting an exhaustive grid-based sweep over the input parameter space is simply too time-consuming. An alternative approach called "directed exploration" has been developed to harvest information from numerical simulators more efficiently. The basic idea is to employ active learning and supervised machine learning to choose cleverly at each step which simulation trials to run next based on the results of previous trials. SIM_EXPLORE is a new computer program that uses directed exploration to explore efficiently complex systems represented by numerical simulations. The software sequentially identifies and runs simulation trials that it believes will be most informative given the results of previous trials. The results of new trials are incorporated into the software's model of the system behavior. The updated model is then used to pick the next round of new trials. This process, implemented as a closed-loop system wrapped around existing simulation code, provides a means to improve the speed and efficiency with which a set of simulations can yield scientifically useful results. The software focuses on the case in which the feedback from the simulation trials is binary-valued, i.e., the learner is only informed of the success or failure of the simulation trial to produce a desired output. The software offers a number of choices for the supervised learning algorithm (the method used to model the system behavior given the results so far) and a number of choices for the active learning strategy (the method used to choose which new simulation trials to run given the current behavior model). The software

  15. Alternative Liquid Fuels Simulation Model (AltSim).

    Energy Technology Data Exchange (ETDEWEB)

    Williams, Ryan; Baker, Arnold Barry; Drennen, Thomas E.

    2009-12-01

    The Alternative Liquid Fuels Simulation Model (AltSim) is a high-level dynamic simulation model which calculates and compares the production and end use costs, greenhouse gas emissions, and energy balances of several alternative liquid transportation fuels. These fuels include: corn ethanol, cellulosic ethanol from various feedstocks (switchgrass, corn stover, forest residue, and farmed trees), biodiesel, and diesels derived from natural gas (gas to liquid, or GTL), coal (coal to liquid, or CTL), and coal with biomass (CBTL). AltSim allows for comprehensive sensitivity analyses on capital costs, operation and maintenance costs, renewable and fossil fuel feedstock costs, feedstock conversion ratio, financial assumptions, tax credits, CO{sub 2} taxes, and plant capacity factor. This paper summarizes the structure and methodology of AltSim, presents results, and provides a detailed sensitivity analysis. The Energy Independence and Security Act (EISA) of 2007 sets a goal for the increased use of biofuels in the U.S., ultimately reaching 36 billion gallons by 2022. AltSim's base case assumes EPA projected feedstock costs in 2022 (EPA, 2009). For the base case assumptions, AltSim estimates per gallon production costs for the five ethanol feedstocks (corn, switchgrass, corn stover, forest residue, and farmed trees) of $1.86, $2.32, $2.45, $1.52, and $1.91, respectively. The projected production cost of biodiesel is $1.81/gallon. The estimates for CTL without biomass range from $1.36 to $2.22. With biomass, the estimated costs increase, ranging from $2.19 per gallon for the CTL option with 8% biomass to $2.79 per gallon for the CTL option with 30% biomass and carbon capture and sequestration. AltSim compares the greenhouse gas emissions (GHG) associated with both the production and consumption of the various fuels. EISA allows fuels emitting 20% less greenhouse gases (GHG) than conventional gasoline and diesels to qualify as renewable fuels. This allows several of the

  16. Alternative Liquid Fuels Simulation Model (AltSim).

    Energy Technology Data Exchange (ETDEWEB)

    Williams, Ryan; Baker, Arnold Barry; Drennen, Thomas E.

    2009-12-01

    The Alternative Liquid Fuels Simulation Model (AltSim) is a high-level dynamic simulation model which calculates and compares the production and end use costs, greenhouse gas emissions, and energy balances of several alternative liquid transportation fuels. These fuels include: corn ethanol, cellulosic ethanol from various feedstocks (switchgrass, corn stover, forest residue, and farmed trees), biodiesel, and diesels derived from natural gas (gas to liquid, or GTL), coal (coal to liquid, or CTL), and coal with biomass (CBTL). AltSim allows for comprehensive sensitivity analyses on capital costs, operation and maintenance costs, renewable and fossil fuel feedstock costs, feedstock conversion ratio, financial assumptions, tax credits, CO{sub 2} taxes, and plant capacity factor. This paper summarizes the structure and methodology of AltSim, presents results, and provides a detailed sensitivity analysis. The Energy Independence and Security Act (EISA) of 2007 sets a goal for the increased use of biofuels in the U.S., ultimately reaching 36 billion gallons by 2022. AltSim's base case assumes EPA projected feedstock costs in 2022 (EPA, 2009). For the base case assumptions, AltSim estimates per gallon production costs for the five ethanol feedstocks (corn, switchgrass, corn stover, forest residue, and farmed trees) of $1.86, $2.32, $2.45, $1.52, and $1.91, respectively. The projected production cost of biodiesel is $1.81/gallon. The estimates for CTL without biomass range from $1.36 to $2.22. With biomass, the estimated costs increase, ranging from $2.19 per gallon for the CTL option with 8% biomass to $2.79 per gallon for the CTL option with 30% biomass and carbon capture and sequestration. AltSim compares the greenhouse gas emissions (GHG) associated with both the production and consumption of the various fuels. EISA allows fuels emitting 20% less greenhouse gases (GHG) than conventional gasoline and diesels to qualify as renewable fuels. This allows several of the

  17. Alternative Liquid Fuels Simulation Model (AltSim).

    Energy Technology Data Exchange (ETDEWEB)

    Baker, Arnold Barry; Williams, Ryan (Hobart and William Smith Colleges, Geneva, NY); Drennen, Thomas E.; Klotz, Richard (Hobart and William Smith Colleges, Geneva, NY)

    2007-10-01

    The Alternative Liquid Fuels Simulation Model (AltSim) is a high-level dynamic simulation model which calculates and compares the production costs, carbon dioxide emissions, and energy balances of several alternative liquid transportation fuels. These fuels include: corn ethanol, cellulosic ethanol, biodiesel, and diesels derived from natural gas (gas to liquid, or GTL) and coal (coal to liquid, or CTL). AltSim allows for comprehensive sensitivity analyses on capital costs, operation and maintenance costs, renewable and fossil fuel feedstock costs, feedstock conversion efficiency, financial assumptions, tax credits, CO{sub 2} taxes, and plant capacity factor. This paper summarizes the preliminary results from the model. For the base cases, CTL and cellulosic ethanol are the least cost fuel options, at $1.60 and $1.71 per gallon, respectively. Base case assumptions do not include tax or other credits. This compares to a $2.35/gallon production cost of gasoline at September, 2007 crude oil prices ($80.57/barrel). On an energy content basis, the CTL is the low cost alternative, at $12.90/MMBtu, compared to $22.47/MMBtu for cellulosic ethanol. In terms of carbon dioxide emissions, a typical vehicle fueled with cellulosic ethanol will release 0.48 tons CO{sub 2} per year, compared to 13.23 tons per year for coal to liquid.

  18. Development of an Open Source Image-Based Flow Modeling Software - SimVascular

    Science.gov (United States)

    Updegrove, Adam; Merkow, Jameson; Schiavazzi, Daniele; Wilson, Nathan; Marsden, Alison; Shadden, Shawn

    2014-11-01

    SimVascular (www.simvascular.org) is currently the only comprehensive software package that provides a complete pipeline from medical image data segmentation to patient specific blood flow simulation. This software and its derivatives have been used in hundreds of conference abstracts and peer-reviewed journal articles, as well as the foundation of medical startups. SimVascular was initially released in August 2007, yet major challenges and deterrents for new adopters were the requirement of licensing three expensive commercial libraries utilized by the software, a complicated build process, and a lack of documentation, support and organized maintenance. In the past year, the SimVascular team has made significant progress to integrate open source alternatives for the linear solver, solid modeling, and mesh generation commercial libraries required by the original public release. In addition, the build system, available distributions, and graphical user interface have been significantly enhanced. Finally, the software has been updated to enable users to directly run simulations using models and boundary condition values, included in the Vascular Model Repository (vascularmodel.org). In this presentation we will briefly overview the capabilities of the new SimVascular 2.0 release. National Science Foundation.

  19. The Hydrogen Futures Simulation Model (H[2]Sim) technical description.

    Energy Technology Data Exchange (ETDEWEB)

    Jones, Scott A.; Kamery, William; Baker, Arnold Barry; Drennen, Thomas E.; Lutz, Andrew E.; Rosthal, Jennifer Elizabeth

    2004-10-01

    Hydrogen has the potential to become an integral part of our energy transportation and heat and power sectors in the coming decades and offers a possible solution to many of the problems associated with a heavy reliance on oil and other fossil fuels. The Hydrogen Futures Simulation Model (H2Sim) was developed to provide a high level, internally consistent, strategic tool for evaluating the economic and environmental trade offs of alternative hydrogen production, storage, transport and end use options in the year 2020. Based on the model's default assumptions, estimated hydrogen production costs range from 0.68 $/kg for coal gasification to as high as 5.64 $/kg for centralized electrolysis using solar PV. Coal gasification remains the least cost option if carbon capture and sequestration costs ($0.16/kg) are added. This result is fairly robust; for example, assumed coal prices would have to more than triple or the assumed capital cost would have to increase by more than 2.5 times for natural gas reformation to become the cheaper option. Alternatively, assumed natural gas prices would have to fall below $2/MBtu to compete with coal gasification. The electrolysis results are highly sensitive to electricity costs, but electrolysis only becomes cost competitive with other options when electricity drops below 1 cent/kWhr. Delivered 2020 hydrogen costs are likely to be double the estimated production costs due to the inherent difficulties associated with storing, transporting, and dispensing hydrogen due to its low volumetric density. H2Sim estimates distribution costs ranging from 1.37 $/kg (low distance, low production) to 3.23 $/kg (long distance, high production volumes, carbon sequestration). Distributed hydrogen production options, such as on site natural gas, would avoid some of these costs. H2Sim compares the expected 2020 per mile driving costs (fuel, capital, maintenance, license, and registration) of current technology internal combustion engine (ICE

  20. Understanding Earthquake Fault Systems Using QuakeSim Analysis and Data Assimilation Tools

    Science.gov (United States)

    Donnellan, Andrea; Parker, Jay; Glasscoe, Margaret; Granat, Robert; Rundle, John; McLeod, Dennis; Al-Ghanmi, Rami; Grant, Lisa

    2008-01-01

    We are using the QuakeSim environment to model interacting fault systems. One goal of QuakeSim is to prepare for the large volumes of data that spaceborne missions such as DESDynI will produce. QuakeSim has the ability to ingest distributed heterogenous data in the form of InSAR, GPS, seismicity, and fault data into various earthquake modeling applications, automating the analysis when possible. Virtual California simulates interacting faults in California. We can compare output from long time history Virtual California runs with the current state of strain and the strain history in California. In addition to spaceborne data we will begin assimilating data from UAVSAR airborne flights over the San Francisco Bay Area, the Transverse Ranges, and the Salton Trough. Results of the models are important for understanding future earthquake risk and for providing decision support following earthquakes. Improved models require this sensor web of different data sources, and a modeling environment for understanding the combined data.

  1. Understanding Earthquake Fault Systems Using QuakeSim Analysis and Data Assimilation Tools

    Science.gov (United States)

    Donnellan, Andrea; Parker, Jay; Glasscoe, Margaret; Granat, Robert; Rundle, John; McLeod, Dennis; Al-Ghanmi, Rami; Grant, Lisa

    2008-01-01

    We are using the QuakeSim environment to model interacting fault systems. One goal of QuakeSim is to prepare for the large volumes of data that spaceborne missions such as DESDynI will produce. QuakeSim has the ability to ingest distributed heterogenous data in the form of InSAR, GPS, seismicity, and fault data into various earthquake modeling applications, automating the analysis when possible. Virtual California simulates interacting faults in California. We can compare output from long time history Virtual California runs with the current state of strain and the strain history in California. In addition to spaceborne data we will begin assimilating data from UAVSAR airborne flights over the San Francisco Bay Area, the Transverse Ranges, and the Salton Trough. Results of the models are important for understanding future earthquake risk and for providing decision support following earthquakes. Improved models require this sensor web of different data sources, and a modeling environment for understanding the combined data.

  2. AlgaeSim: a model for integrated algal biofuel production and wastewater treatment.

    Science.gov (United States)

    Drexler, Ivy L C; Joustra, Caryssa; Prieto, Ana; Bair, Robert; Yeh, Daniel H

    2014-02-01

    AlgaeSim, a dynamic multiple-systems (C, N, P) mass balance model, was developed to explore the potential for algae biomass production from wastewater by coupling two photobioreactors into the main treatment train at a municipal wastewater resource recovery facility (WRRF) in Tampa, Florida. The scoping model examined the synergy between algae cultivation and wastewater treatment through algal growth and substrate removal kinetics, as well as through macroeconomic analyses of biomass conversion to bioproducts. Sensitivity analyses showed that biomass production is strongly dependent on Monod variables and harvesting regime, with sensitivity changing with growth phase. Profitability was sensitive to processing costs and market prices of products. Under scenarios based on current market conditions and typical algae production, AlgaeSim shows that a WRRF can potentially generate significant profit if algae are processed for biodiesel, biogas, or fertilizer. Wastewater resource recovery facilities could similarly save on operating costs resulting from the reduction in aeration (for nitrification) and chemicals (for denitrification).

  3. Modeling Multi-Wavelength Stellar Astrometry. I. SIM Lite Observations of Interacting Binaries

    CERN Document Server

    Coughlin, Jeffrey L; Harrison, Thomas E; Hoard, D W; Ciardi, David R; Benedict, G Fritz; Howell, Steve B; McArthur, Barbara E; Wachter, Stefanie

    2010-01-01

    Interacting binaries consist of a secondary star which fills or is very close to filling its Roche lobe, resulting in accretion onto the primary star, which is often, but not always, a compact object. In many cases, the primary star, secondary star, and the accretion disk can all be significant sources of luminosity. SIM Lite will only measure the photocenter of an astrometric target, and thus determining the true astrometric orbits of such systems will be difficult. We have modified the Eclipsing Light Curve code (Orosz & Hauschildt 2000) to allow us to model the flux-weighted reflex motions of interacting binaries, in a code we call REFLUX. This code gives us sufficient flexibility to investigate nearly every configuration of interacting binary. We find that SIM Lite will be able to determine astrometric orbits for all sufficiently bright interacting binaries where the primary or secondary star dominates the luminosity. For systems where there are multiple components that comprise the spectrum in the op...

  4. Denitrification in the root zone using a simple empirical model SimDen

    DEFF Research Database (Denmark)

    Vinther, Finn Pilgaard

    2006-01-01

    Only by knowing soil type and amount of nitrogen applied, an estimate of the annual denitrification can be obtained with the simple empirical model SimDen.......Only by knowing soil type and amount of nitrogen applied, an estimate of the annual denitrification can be obtained with the simple empirical model SimDen....

  5. Energy Integration for 2050 - A Strategic Impact Model (2050 SIM), Version 2.0

    Energy Technology Data Exchange (ETDEWEB)

    John Collins

    2011-09-01

    The United States (U.S.) energy infrastructure is among the most reliable, accessible, and economic in the world. On the other hand, it is also excessively reliant on foreign energy sources, experiences high volatility in energy prices, does not always practice good stewardship of finite indigenous energy resources, and emits significant quantities of greenhouse gas. The U.S. Department of Energy is conducting research and development on advanced nuclear reactor concepts and technologies, including High Temperature Gas Reactor (HTGR) technologies, directed at helping the United States meet its current and future energy challenges. This report discusses the Draft Strategic Impact Model (SIM), an initial version of which was created during the later part of FY-2010. SIM was developed to analyze and depict the benefits of various energy sources in meeting the energy demand and to provide an overall system understanding of the tradeoffs between building and using HTGRs versus other existing technologies for providing energy (heat and electricity) to various energy-use sectors in the United States. This report also provides the assumptions used in the model, the rationale for the methodology, and the references for the source documentation and source data used in developing the SIM.

  6. Energy Integration for 2050 - A Strategic Impact Model (2050 SIM), Version 1.0

    Energy Technology Data Exchange (ETDEWEB)

    2010-10-01

    The United States (U.S.) energy infrastructure is among the most reliable, accessible, and economic in the world. On the other hand, it is also excessively reliant on foreign energy sources, experiences high volatility in energy prices, does not always practice good stewardship of finite indigenous energy resources, and emits significant quantities of greenhouse gas. The U.S. Department of Energy is conducting research and development on advanced nuclear reactor concepts and technologies, including High Temperature Gas Reactor (HTGR) technologies, directed at helping the United States meet its current and future energy challenges. This report discusses the Draft Strategic Impact Model (SIM), an initial version of which was created during the later part of FY-2010. SIM was developed to analyze and depict the benefits of various energy sources in meeting the energy demand and to provide an overall system understanding of the tradeoffs between building and using HTGRs versus other existing technologies for providing energy (heat and electricity) to various energy-use sectors in the United States. This report also provides the assumptions used in the model, the rationale for the methodology, and the references for the source documentation and source data used in developing the SIM.

  7. WEC-SIM Phase 1 Validation Testing -- Numerical Modeling of Experiments: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Ruehl, Kelley; Michelen, Carlos; Bosma, Bret; Yu, Yi-Hsiang

    2016-08-01

    The Wave Energy Converter Simulator (WEC-Sim) is an open-source code jointly developed by Sandia National Laboratories and the National Renewable Energy Laboratory. It is used to model wave energy converters subjected to operational and extreme waves. In order for the WEC-Sim code to be beneficial to the wave energy community, code verification and physical model validation is necessary. This paper describes numerical modeling of the wave tank testing for the 1:33-scale experimental testing of the floating oscillating surge wave energy converter. The comparison between WEC-Sim and the Phase 1 experimental data set serves as code validation. This paper is a follow-up to the WEC-Sim paper on experimental testing, and describes the WEC-Sim numerical simulations for the floating oscillating surge wave energy converter.

  8. WEC-Sim Phase 1 Validation Testing: Numerical Modeling of Experiments

    Energy Technology Data Exchange (ETDEWEB)

    Ruehl, Kelley; Michelen, Carlos; Bosma, Bret; Yu, Yi-Hsiang

    2016-06-24

    The Wave Energy Converter Simulator (WEC-Sim) is an open-source code jointly developed by Sandia National Laboratories and the National Renewable Energy Laboratory. It is used to model wave energy converters subjected to operational and extreme waves. In order for the WEC-Sim code to be beneficial to the wave energy community, code verification and physical model validation is necessary. This paper describes numerical modeling of the wave tank testing for the 1:33-scale experimental testing of the floating oscillating surge wave energy converter. The comparison between WEC-Sim and the Phase 1 experimental data set serves as code validation. This paper is a follow-up to the WEC-Sim paper on experimental testing, and describes the WEC-Sim numerical simulations for the floating oscillating surge wave energy converter.

  9. Developing integrated TOF-SIMS/MALDI IMS system in studying biological systems

    Science.gov (United States)

    Wu, Ligang

    Using imaging mass spectrometry (IMS) techniques (including TOF-SIMS and MALDI IMS) to study biological systems is a relatively new concept and quickly gained popularity in recent years. Imaging mass spectrometry is a discovery technology that utilizes a focused ion beam or laser beam to desorb ions from sample surface. By detecting the desorbed ions, the chemical distributions and biological changes of a sample surface can be analyzed. These techniques offer a new analytical imaging approach to investigate biological processes at the cellular and tissue level. In this research, a novel integrated TOF-SIMS/MALDI IMS system as well as IMS based biological-sample-preparation techniques and data-reduction methods are developed. We then demonstrate the power of these techniques in studying different biological systems, including monosaccharides isomers, human breast cancer cell lines, mouse embryo tissues and mouse kidney sections. Using TOF-SIMS and statistical analysis methods, seven monosaccharide isomers are fully differentiated by analyzing their characteristic spectral pattern. In addition, a deep understanding of the fragmentation pathway of these isomers under ion bombardment is gained. In an application of TOF-SIMS to the differentiation of three human breast cancer cell lines, MCF-7, T47D, and MDA-MB-231, we show that principal component analysis (PCA) data reduction of TOF-SIMS spectra can differentiate cellular compartments (cytosol, nuclear and particulate) within the cell types, as well as homogenates from among the three cell lines. In a tissue-specific application, we extend the analytical capabilities of TOF-SIMS and PCA by imaging and differentiating Formalin-fixed paraffin-embedded (FFPE) mouse embryo tissues. We demonstrate reproducible differentiation of six tissue types based on the remaining small molecules after paraffin-embedding and the fragments of the cellular proteins. In a unique study of fresh frozen mouse kidney tissues, both TOF-SIMS

  10. Model Comparison in Subsurface Science: The DECOVALEX and Sim-SEQ Initiatives (Invited)

    Science.gov (United States)

    Birkholzer, J. T.; Mukhopadhyay, S.; Rutqvist, J.; Tsang, C.

    2013-12-01

    , the DECOVALEX project has played a major role in improving our understanding of coupled THM processes in fractured rock and buffer/backfill materials, a subject of importance to performance assessment of a radioactive waste geologic repository. The second example is the Sim-SEQ project, a relatively recent model comparison initiative addressing multi-phase processes relevant in geologic carbon sequestration. Like DECOVALEX, Sim-SEQ is not about benchmarking, but rather about evaluating model building efforts in a broad and comprehensive sense. In Sim-SEQ, sixteen international modeling teams are building their own models for a specific carbon sequestration site referred to as the Sim-SEQ Study site (the S-3 site). The S-3 site is patterned after the ongoing SECARB Phase III Early Test site in southwestern Mississippi, where CO2 is injected into a fluvial sandstone unit with high vertical and lateral heterogeneity. The complex geology of the S-3 site, its location in the water leg of a CO2-EOR field with a strong water drive, and the presence of methane in the reservoir brine make this a challenging task, requiring the modelers to use their best judgment in making a large number of choices about how to model various processes and properties of the system.

  11. Corner cube model for Microarcsec Metrology (MAM) testbed in Space Interferometer Mission (SIM)

    Science.gov (United States)

    Wang, Xu

    2005-02-01

    A corner cube model is developed to calculate the SIM internal metrology optical delay bias (with the accuracy of picometer) due to the component imperfections, such as vertex offset, coating index error, dihedral error, and gimbal offset. This physics-based and Matlab-implemented ray-trace model provides useful guidance on the flight system design, integration, and characterization. In this paper, the details of the corner cube model will be described first. Then the sub-nanometer level model validation through the MAM testbed will be presented. Finally several examples of the model application, such as the metrology delay bias minimization, design parameter error budget (or tolerance) allocation, and the metrology beam prints visualization, will be shown.

  12. Coloring GPenSIM

    OpenAIRE

    2008-01-01

    The object of this report is to present a solution on how to implement color functionality in GPenSIM. Current version of GPenSIM is based on Place/Transition nets (PT-nets). When creating systems with PT-nets there are some issues when modeling large real life systems. First of all PT-nets have no data concepts. This results in extremely large nets, because the data manipulation has to be represented in the net as places and transitions. The other issue concerns the hierarc...

  13. Benchmarking Exercises To Validate The Updated ELLWF GoldSim Slit Trench Model

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, G. A.; Hiergesell, R. A.

    2013-11-12

    The Savannah River National Laboratory (SRNL) results of the 2008 Performance Assessment (PA) (WSRC, 2008) sensitivity/uncertainty analyses conducted for the trenches located in the EArea LowLevel Waste Facility (ELLWF) were subject to review by the United States Department of Energy (U.S. DOE) Low-Level Waste Disposal Facility Federal Review Group (LFRG) (LFRG, 2008). LFRG comments were generally approving of the use of probabilistic modeling in GoldSim to support the quantitative sensitivity analysis. A recommendation was made, however, that the probabilistic models be revised and updated to bolster their defensibility. SRS committed to addressing those comments and, in response, contracted with Neptune and Company to rewrite the three GoldSim models. The initial portion of this work, development of Slit Trench (ST), Engineered Trench (ET) and Components-in-Grout (CIG) trench GoldSim models, has been completed. The work described in this report utilizes these revised models to test and evaluate the results against the 2008 PORFLOW model results. This was accomplished by first performing a rigorous code-to-code comparison of the PORFLOW and GoldSim codes and then performing a deterministic comparison of the two-dimensional (2D) unsaturated zone and three-dimensional (3D) saturated zone PORFLOW Slit Trench models against results from the one-dimensional (1D) GoldSim Slit Trench model. The results of the code-to-code comparison indicate that when the mechanisms of radioactive decay, partitioning of contaminants between solid and fluid, implementation of specific boundary conditions and the imposition of solubility controls were all tested using identical flow fields, that GoldSim and PORFLOW produce nearly identical results. It is also noted that GoldSim has an advantage over PORFLOW in that it simulates all radionuclides simultaneously - thus avoiding a potential problem as demonstrated in the Case Study (see Section 2.6). Hence, it was concluded that the follow

  14. Ship Design Manager (SDM) and Systems Integration Manager (SIM) Manual

    Science.gov (United States)

    2012-02-13

    ISO 9001 Quality Management Systems - Requirements NAVSEAINST 4855.33, Application of the International Organization for Standardization ( ISO ) 9000...Standardization ( ISO ) industry standards ( ISO 10303 STEP) in place specifying content and format for exchanging ship product model data. Prototype...translators have been built for several CAD systems, but they are not generally commercially available at present. The ISO standards are applicable to

  15. The Sim-SEQ Project: Comparison of Selected Flow Models for the S-3 Site

    Energy Technology Data Exchange (ETDEWEB)

    Mukhopadhyay, Sumit; Doughty, Christine A.; Bacon, Diana H.; Li, Jun; Wei, Lingli; Yamamoto, Hajime; Gasda, Sarah E.; Hosseini, Seyyed; Nicot, Jean-Philippe; Birkholzer, Jens

    2015-05-23

    Sim-SEQ is an international initiative on model comparison for geologic carbon sequestration, with an objective to understand and, if possible, quantify model uncertainties. Model comparison efforts in Sim-SEQ are at present focusing on one specific field test site, hereafter referred to as the Sim-SEQ Study site (or S-3 site). Within Sim-SEQ, different modeling teams are developing conceptual models of CO2 injection at the S-3 site. In this paper, we select five flow models of the S-3 site and provide a qualitative comparison of their attributes and predictions. These models are based on five different simulators or modeling approaches: TOUGH2/EOS7C, STOMP-CO2e, MoReS, TOUGH2-MP/ECO2N, and VESA. In addition to model-to-model comparison, we perform a limited model-to-data comparison, and illustrate how model choices impact model predictions. We conclude the paper by making recommendations for model refinement that are likely to result in less uncertainty in model predictions.

  16. SimWall: a practical user-friendly stereo tiled display wall system

    Institute of Scientific and Technical Information of China (English)

    XIE Li-jun; ZHENG Yao; YANG Ting-jun; GAO Wen-xuan; PAN Ning-he

    2007-01-01

    Sim Wall is a user-friendly, stereo tiled display wall system composed of 18 commodity projectors operated by a Linux graphics cluster. Collaborating together, these projectors work as a single logical display capable of giving a high-resolution show,large-scale, and passive stereo scene. In order to avoid tedious system setup and maintenance, software-based automatic geometry and photometric calibration are used. The software calibration is integrated to the system seamlessly by an on-card transform method and is transparent to users. To end-users, Sim Wall works just as a common PC, but provides super computing, rendering and displaying ability. In addition, Sim Wall has stereoscopic function that gives users a semi-immersive experience in polarized passive way. This paper presents system architecture, implementation, and other technical issues such as hardware constraints,projectors alignment, geometry and photometric calibration, implementation of passive stereo, and development of overall software environment.

  17. SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.

    Science.gov (United States)

    Magnus, Marcin; Boniecki, Michał J; Dawson, Wayne; Bujnicki, Janusz M

    2016-07-08

    RNA function in many biological processes depends on the formation of three-dimensional (3D) structures. However, RNA structure is difficult to determine experimentally, which has prompted the development of predictive computational methods. Here, we introduce a user-friendly online interface for modeling RNA 3D structures using SimRNA, a method that uses a coarse-grained representation of RNA molecules, utilizes the Monte Carlo method to sample the conformational space, and relies on a statistical potential to describe the interactions in the folding process. SimRNAweb makes SimRNA accessible to users who do not normally use high performance computational facilities or are unfamiliar with using the command line tools. The simplest input consists of an RNA sequence to fold RNA de novo. Alternatively, a user can provide a 3D structure in the PDB format, for instance a preliminary model built with some other technique, to jump-start the modeling close to the expected final outcome. The user can optionally provide secondary structure and distance restraints, and can freeze a part of the starting 3D structure. SimRNAweb can be used to model single RNA sequences and RNA-RNA complexes (up to 52 chains). The webserver is available at http://genesilico.pl/SimRNAweb.

  18. SimCheck: An Expressive Type System for Simulink

    Science.gov (United States)

    Roy, Pritam; Shankar, Natarajan

    2010-01-01

    MATLAB Simulink is a member of a class of visual languages that are used for modeling and simulating physical and cyber-physical systems. A Simulink model consists of blocks with input and output ports connected using links that carry signals. We extend the type system of Simulink with annotations and dimensions/units associated with ports and links. These types can capture invariants on signals as well as relations between signals. We define a type-checker that checks the wellformedness of Simulink blocks with respect to these type annotations. The type checker generates proof obligations that are solved by SRI's Yices solver for satisfiability modulo theories (SMT). This translation can be used to detect type errors, demonstrate counterexamples, generate test cases, or prove the absence of type errors. Our work is an initial step toward the symbolic analysis of MATLAB Simulink models.

  19. CystiSim – An Agent-Based Model for Taenia solium Transmission and Control

    Science.gov (United States)

    Gabriël, Sarah; Dorny, Pierre; Speybroeck, Niko; Magnussen, Pascal; Torgerson, Paul; Johansen, Maria Vang

    2016-01-01

    Taenia solium taeniosis/cysticercosis was declared eradicable by the International Task Force for Disease Eradication in 1993, but remains a neglected zoonosis. To assist in the attempt to regionally eliminate this parasite, we developed cystiSim, an agent-based model for T. solium transmission and control. The model was developed in R and available as an R package (http://cran.r-project.org/package=cystiSim). cystiSim was adapted to an observed setting using field data from Tanzania, but adaptable to other settings if necessary. The model description adheres to the Overview, Design concepts, and Details (ODD) protocol and consists of two entities—pigs and humans. Pigs acquire cysticercosis through the environment or by direct contact with a tapeworm carrier's faeces. Humans acquire taeniosis from slaughtered pigs proportional to their infection intensity. The model allows for evaluation of three interventions measures or combinations hereof: treatment of humans, treatment of pigs, and pig vaccination, and allows for customary coverage and efficacy settings. cystiSim is the first agent-based transmission model for T. solium and suggests that control using a strategy consisting of an intervention only targeting the porcine host is possible, but that coverage and efficacy must be high if elimination is the ultimate goal. Good coverage of the intervention is important, but can be compensated for by including an additional intervention targeting the human host. cystiSim shows that the scenarios combining interventions in both hosts, mass drug administration to humans, and vaccination and treatment of pigs, have a high probability of success if coverage of 75% can be maintained over at least a four year period. In comparison with an existing mathematical model for T. solium transmission, cystiSim also includes parasite maturation, host immunity, and environmental contamination. Adding these biological parameters to the model resulted in new insights in the potential

  20. CystiSim - An Agent-Based Model for Taenia solium Transmission and Control.

    Science.gov (United States)

    Braae, Uffe Christian; Devleesschauwer, Brecht; Gabriël, Sarah; Dorny, Pierre; Speybroeck, Niko; Magnussen, Pascal; Torgerson, Paul; Johansen, Maria Vang

    2016-12-01

    Taenia solium taeniosis/cysticercosis was declared eradicable by the International Task Force for Disease Eradication in 1993, but remains a neglected zoonosis. To assist in the attempt to regionally eliminate this parasite, we developed cystiSim, an agent-based model for T. solium transmission and control. The model was developed in R and available as an R package (http://cran.r-project.org/package=cystiSim). cystiSim was adapted to an observed setting using field data from Tanzania, but adaptable to other settings if necessary. The model description adheres to the Overview, Design concepts, and Details (ODD) protocol and consists of two entities-pigs and humans. Pigs acquire cysticercosis through the environment or by direct contact with a tapeworm carrier's faeces. Humans acquire taeniosis from slaughtered pigs proportional to their infection intensity. The model allows for evaluation of three interventions measures or combinations hereof: treatment of humans, treatment of pigs, and pig vaccination, and allows for customary coverage and efficacy settings. cystiSim is the first agent-based transmission model for T. solium and suggests that control using a strategy consisting of an intervention only targeting the porcine host is possible, but that coverage and efficacy must be high if elimination is the ultimate goal. Good coverage of the intervention is important, but can be compensated for by including an additional intervention targeting the human host. cystiSim shows that the scenarios combining interventions in both hosts, mass drug administration to humans, and vaccination and treatment of pigs, have a high probability of success if coverage of 75% can be maintained over at least a four year period. In comparison with an existing mathematical model for T. solium transmission, cystiSim also includes parasite maturation, host immunity, and environmental contamination. Adding these biological parameters to the model resulted in new insights in the potential

  1. Modeling and Simulation of Scalable Cloud Computing Environments and the CloudSim Toolkit: Challenges and Opportunities

    CERN Document Server

    Buyya, Rajkumar; Calheiros, Rodrigo N

    2009-01-01

    Cloud computing aims to power the next generation data centers and enables application service providers to lease data center capabilities for deploying applications depending on user QoS (Quality of Service) requirements. Cloud applications have different composition, configuration, and deployment requirements. Quantifying the performance of resource allocation policies and application scheduling algorithms at finer details in Cloud computing environments for different application and service models under varying load, energy performance (power consumption, heat dissipation), and system size is a challenging problem to tackle. To simplify this process, in this paper we propose CloudSim: an extensible simulation toolkit that enables modelling and simulation of Cloud computing environments. The CloudSim toolkit supports modelling and creation of one or more virtual machines (VMs) on a simulated node of a Data Center, jobs, and their mapping to suitable VMs. It also allows simulation of multiple Data Centers to...

  2. The role of public policies in reducing smoking: the Minnesota SimSmoke tobacco policy model.

    Science.gov (United States)

    Levy, David T; Boyle, Raymond G; Abrams, David B

    2012-11-01

    Following the landmark lawsuit and settlement with the tobacco industry, Minnesota pursued the implementation of stricter tobacco control policies, including tax increases, mass media campaigns, smokefree air laws, and cessation treatment policies. Modeling is used to examine policy effects on smoking prevalence and smoking-attributable deaths. To estimate the effect of tobacco control policies in Minnesota on smoking prevalence and smoking-attributable deaths using the SimSmoke simulation model. Minnesota data starting in 1993 are applied to SimSmoke, a simulation model used to examine the effect of tobacco control policies over time on smoking initiation and cessation. Upon validating the model against smoking prevalence, SimSmoke is used to distinguish the effect of policies implemented since 1993 on smoking prevalence. Using standard attribution methods, SimSmoke also estimates deaths averted as a result of the policies. SimSmoke predicts smoking prevalence accurately between 1993 and 2011. Since 1993, a relative reduction in smoking rates of 29% by 2011 and of 41% by 2041 can be attributed to tobacco control policies, mainly tax increases, smokefree air laws, media campaigns, and cessation treatment programs. Moreover, 48,000 smoking-attributable deaths will be averted by 2041. Minnesota SimSmoke demonstrates that tobacco control policies, especially taxes, have substantially reduced smoking prevalence and smoking-attributable deaths. Taxes, smokefree air laws, mass media, cessation treatment policies, and youth-access enforcement contributed to the decline in prevalence and deaths averted, with the strongest component being taxes. With stronger policies, for example, increasing cigarette taxes to $4.00 per pack, Minnesota's smoking rate could be reduced by another 13%, and 7200 deaths could be averted by 2041. Copyright © 2012 American Journal of Preventive Medicine. Published by Elsevier Inc. All rights reserved.

  3. Hanford Soil Inventory Model (SIM) Rev. 1 Software Documentation – Requirements, Design, and Limitations

    Energy Technology Data Exchange (ETDEWEB)

    Simpson, Brett C.; Corbin, Rob A.; Anderson, Michael J.; Kincaid, Charles T.

    2006-09-25

    The objective of this document is to support the simulation results reported by Corbin et al. (2005) by documenting the requirements, conceptual model, simulation methodology, testing, and quality assurance associated with the Hanford Soil Inventory Model (SIM). There is no conventional software life-cycle documentation associated with the Hanford SIM because of the research and development nature of the project. Because of the extensive use of commercial- off-the-shelf software products, there was little actual software development as part of this application. This document is meant to provide historical context and technical support of Corbin et al. (2005), which is a significant revision and update to an earlier product Simpson et al. (2001). The SIM application computed waste discharges composed of 75 analytes at 377 waste sites (liquid disposal, unplanned releases, and tank farm leaks) over an operational period of approximately 50 years. The development and application of SIM was an effort to develop a probabilistic approach to estimate comprehensive, mass balanced-based contaminant inventories for the Hanford Site post-closure setting. A computer model capable of calculating inventories and the associated uncertainties as a function of time was identified to address the needs of the Remediation and Closure Science (RCS) Project.

  4. Sims Prototype System 2 Test Results - Engineering Analysis

    Energy Technology Data Exchange (ETDEWEB)

    None

    1978-01-01

    This report describes the testing, the problems encountered, and the results and conclusions obtained from tests performed on the IBM Prototype system 2, solar hot water system, at the Marshall space flight Center Solar Test Facility. System 2 is a liquid, non-draining solar energy system for supplying domestic hot water to singe residences. The system consists of collectors, storage tank, heat exchanger, pumps and associated plumbing and controls.

  5. Imaging lipid distributions in model monolayers by ToF-SIMS with selectively deuterated components and principal components analysis

    Energy Technology Data Exchange (ETDEWEB)

    Biesinger, Mark C. [Surface Science Western, University of Western Ontario, London, Ont., N6A 5B7 (Canada)]. E-mail: biesingr@uwo.ca; Miller, David J. [Surface Science Western, University of Western Ontario, London, Ont., N6A 5B7 (Canada); Department of Chemistry, University of Western Ontario, London, Ont., N6A 5B7 (Canada); Harbottle, Robert R. [Department of Chemistry, University of Western Ontario, London, Ont., N6A 5B7 (Canada); Possmayer, Fred [Department of Obstetrics and Gynecology, University of Western Ontario, London, Ont., N6A 5B7 (Canada); McIntyre, N. Stewart [Surface Science Western, University of Western Ontario, London, Ont., N6A 5B7 (Canada); Department of Chemistry, University of Western Ontario, London, Ont., N6A 5B7 (Canada); Petersen, Nils O. [National Institute for Nanotechnology and Department of Chemistry, University of Alberta W6-017 ECERF Bldg, 9107-116th Street, Edmonton, Alta., T6G 2V4 (Canada)

    2006-07-30

    Time of flight secondary ion mass spectrometry (ToF-SIMS) provides the capability to image the distribution of molecular ions and their associated fragments that are emitted from monolayer films. ToF-SIMS can be applied to the analysis of monolayers of complex lipid mixtures that act as a model to understand the organization of cell membranes into solid-like domains called lipid rafts. The ability to determine the molecular distribution of lipids using ToF-SIMS in monolayer films is also important in studies of the function of pulmonary surfactant. One of the limitations of the use of ToF-SIMS to studies of complex lipid mixtures found in biological systems, arises from the similarity of the mass fragments that are emitted from the components of the lipid mixture. The use of selectively deuterated components in a mixture overcomes this limitation and results in an unambiguous assignment of specific lipids to particular surface domains. The use of deuterium labeling to identify specific lipids in a multi-component mixture can be done by the deuteration of a single lipid or by the addition of more than one lipid with selectively deuterated components. The incorporation of deuterium into the lipid chains does not alter the miscibility or phase behavior of these systems. The use of deuterium labeling to identify lipids and determine their distribution in monolayer films will be demonstrated using two biological systems. Principal components analysis (PCA) is used to further analyze these deuterated systems checking for the origin of the various mass fragments present.

  6. User Guide for GoldSim Model to Calculate PA/CA Doses and Limits

    Energy Technology Data Exchange (ETDEWEB)

    Smith, F. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL)

    2016-10-31

    A model to calculate doses for solid waste disposal at the Savannah River Site (SRS) and corresponding disposal limits has been developed using the GoldSim commercial software. The model implements the dose calculations documented in SRNL-STI-2015-00056, Rev. 0 “Dose Calculation Methodology and Data for Solid Waste Performance Assessment (PA) and Composite Analysis (CA) at the Savannah River Site”.

  7. ArchSim: A System-Level Parallel Simulation Platform for the Architecture Design of High Performance Computer

    Institute of Scientific and Technical Information of China (English)

    Yong-Qin Huang; Hong-Liang Li; Xiang-Hui Xie; Lei Qian; Zi-Yu Hao; Feng Guo; Kun Zhang

    2009-01-01

    High performance computer(HPC)is a complex huge system,of which the architecture design meets increasing difficulties and risks.Traditional methods,such as theoretical analysis,component-level simulation and sequential simulation,are not applicable to system-level simulations of HPC systems.Eyen the parallel simulation using large-scale parallel machines also have many difficulties in scalability,reliability,generality,as well as efficiency.According to the current needs of HPC architecture design,this paper proposes a system-level parallel simulation platform:ArchSim.We first introduce the architecture of ArchSim simulation platform which is composed of a global server(GS),local server agents(LSA)and entities.Secondly,we emphasize some key techniques of ArchSim,including the synchronization protocol,the communication mechanism and the distributed checkpointing/restart mechanism.We then make a synthesized test of some main performance indices of ArchSim with the phold benchmark and analyze the extra overhead generated by ArchSim.Finally,based on ArchSim.we construct a parallel event-driven interconnection network simulator and a system-level simulator for a small scale HPC system with 256 processors.The results of the performance test and HPC system simulations demonstrate that ArchSim can achieve high speedup ratio and high scalability on parallel host machine and support system-level simulations for the architecture design of HPC systems.

  8. MediSim: A Prototype VR System for Training Medical First Responders

    Energy Technology Data Exchange (ETDEWEB)

    Stansfield, S.; Shawver, D.; Sobel, A.

    1997-12-31

    This paper presents a prototype virtual reality (VR) system for training medical first responders. The initial application is to battlefield medicine and focuses on the training of medical corpsmen and other front-line personnel who might be called upon to provide emergency triage on the battlefield. The system is built upon Sandia`s multi-user, distributed VR platform and provides an interactive, immersive simulation capability. The user is represented by an Avatar and is able to manipulate his virtual instruments and carry out medical procedures. A dynamic casualty simulation provides realistic cues to the patient`s condition (e.g. changing blood pressure and pulse) and responds to the actions of the trainee (e.g. a change in the color of a patient`s skin may result from a check of the capillary refill rate). The current casualty simulation is of an injury resulting in a tension pneumothorax. This casualty model was developed by the University of Pennsylvania and integrated into the Sandia MediSim system.

  9. Assimilation of ASCAT near-surface soil moisture into the SIM hydrological model over France

    Directory of Open Access Journals (Sweden)

    C. Draper

    2011-12-01

    Full Text Available This study examines whether the assimilation of remotely sensed near-surface soil moisture observations might benefit an operational hydrological model, specifically Météo-France's SAFRAN-ISBA-MODCOU (SIM model. Soil moisture data derived from ASCAT backscatter observations are assimilated into SIM using a Simplified Extended Kalman Filter (SEKF over 3.5 years. The benefit of the assimilation is tested by comparison to a delayed cut-off version of SIM, in which the land surface is forced with more accurate atmospheric analyses, due to the availability of additional atmospheric observations after the near-real time data cut-off. However, comparing the near-real time and delayed cut-off SIM models revealed that the main difference between them is a dry bias in the near-real time precipitation forcing, which resulted in a dry bias in the root-zone soil moisture and associated surface moisture flux forecasts. While assimilating the ASCAT data did reduce the root-zone soil moisture dry bias (by nearly 50%, this was more likely due to a bias within the SEKF, than due to the assimilation having accurately responded to the precipitation errors. Several improvements to the assimilation are identified to address this, and a bias-aware strategy is suggested for explicitly correcting the model bias. However, in this experiment the moisture added by the SEKF was quickly lost from the model surface due to the enhanced surface fluxes (particularly drainage induced by the wetter soil moisture states. Consequently, by the end of each winter, during which frozen conditions prevent the ASCAT data from being assimilated, the model land surface had returned to its original (dry-biased climate. This highlights that it would be more effective to address the precipitation bias directly, than to correct it by constraining the model soil moisture through data assimilation.

  10. Simulation of network intrusion detection system with GPenSim

    OpenAIRE

    2011-01-01

    In recent years, network has penetrated into every aspect of our life with its rapid growth and popularization. More and more serious network security problems have occurred together with this process, especially network intrusion problem. It has seriously affected the normal use of network, so research of network intrusion detection has become one of the hottest research areas. This thesis simulated a network intrusion detection system based on particle filter to solve the network intrusion ...

  11. SimCenter Hawaii Technology Enabled Learning and Intervention Systems

    Science.gov (United States)

    2008-01-01

    joystick or gloves limit tactile sensation. The use of an HMD generates fa- tigue and is cumbersome. Both ‘real training’ using isolation gear and...are not applicable or feasible. VR enhances visualization and interaction. Users are immerged into an augmented reality with life-like...variety of Virtual, Mixed, and Augmented Reality systems. The optical sight can be modified into a wide family of tools for viewing and selecting

  12. FUX-Sim: Implementation of a fast universal simulation/reconstruction framework for X-ray systems.

    Science.gov (United States)

    Abella, Monica; Serrano, Estefania; Garcia-Blas, Javier; García, Ines; de Molina, Claudia; Carretero, Jesus; Desco, Manuel

    2017-01-01

    The availability of digital X-ray detectors, together with advances in reconstruction algorithms, creates an opportunity for bringing 3D capabilities to conventional radiology systems. The downside is that reconstruction algorithms for non-standard acquisition protocols are generally based on iterative approaches that involve a high computational burden. The development of new flexible X-ray systems could benefit from computer simulations, which may enable performance to be checked before expensive real systems are implemented. The development of simulation/reconstruction algorithms in this context poses three main difficulties. First, the algorithms deal with large data volumes and are computationally expensive, thus leading to the need for hardware and software optimizations. Second, these optimizations are limited by the high flexibility required to explore new scanning geometries, including fully configurable positioning of source and detector elements. And third, the evolution of the various hardware setups increases the effort required for maintaining and adapting the implementations to current and future programming models. Previous works lack support for completely flexible geometries and/or compatibility with multiple programming models and platforms. In this paper, we present FUX-Sim, a novel X-ray simulation/reconstruction framework that was designed to be flexible and fast. Optimized implementation for different families of GPUs (CUDA and OpenCL) and multi-core CPUs was achieved thanks to a modularized approach based on a layered architecture and parallel implementation of the algorithms for both architectures. A detailed performance evaluation demonstrates that for different system configurations and hardware platforms, FUX-Sim maximizes performance with the CUDA programming model (5 times faster than other state-of-the-art implementations). Furthermore, the CPU and OpenCL programming models allow FUX-Sim to be executed over a wide range of hardware

  13. A Micro-Grid Simulator Tool (SGridSim) using Effective Node-to-Node Complex Impedance (EN2NCI) Models

    Energy Technology Data Exchange (ETDEWEB)

    Udhay Ravishankar; Milos manic

    2013-08-01

    This paper presents a micro-grid simulator tool useful for implementing and testing multi-agent controllers (SGridSim). As a common engineering practice it is important to have a tool that simplifies the modeling of the salient features of a desired system. In electric micro-grids, these salient features are the voltage and power distributions within the micro-grid. Current simplified electric power grid simulator tools such as PowerWorld, PowerSim, Gridlab, etc, model only the power distribution features of a desired micro-grid. Other power grid simulators such as Simulink, Modelica, etc, use detailed modeling to accommodate the voltage distribution features. This paper presents a SGridSim micro-grid simulator tool that simplifies the modeling of both the voltage and power distribution features in a desired micro-grid. The SGridSim tool accomplishes this simplified modeling by using Effective Node-to-Node Complex Impedance (EN2NCI) models of components that typically make-up a micro-grid. The term EN2NCI models means that the impedance based components of a micro-grid are modeled as single impedances tied between their respective voltage nodes on the micro-grid. Hence the benefit of the presented SGridSim tool are 1) simulation of a micro-grid is performed strictly in the complex-domain; 2) faster simulation of a micro-grid by avoiding the simulation of detailed transients. An example micro-grid model was built using the SGridSim tool and tested to simulate both the voltage and power distribution features with a total absolute relative error of less than 6%.

  14. SuReSim: simulating localization microscopy experiments from ground truth models.

    Science.gov (United States)

    Venkataramani, Varun; Herrmannsdörfer, Frank; Heilemann, Mike; Kuner, Thomas

    2016-04-01

    Super-resolution fluorescence microscopy has become a widely used tool in many areas of research. However, designing and validating super-resolution experiments to address a research question in a technically feasible and scientifically rigorous manner remains a fundamental challenge. We developed SuReSim, a software tool that simulates localization data of arbitrary three-dimensional structures represented by ground truth models, allowing users to systematically explore how changing experimental parameters can affect potential imaging outcomes.

  15. 基于Simulink/SimMechanics的三自由度并联机器人控制系统仿真%Simulation of Control System for 3D of Parallel Robot based on Simulink/SimMechanics

    Institute of Scientific and Technical Information of China (English)

    胡峰; 骆德渊; 雷霆; 柯辉

    2012-01-01

    Aiming at the problem that the control system of parallel robot is more complicated, compared to the traditional series robot, the technology of virtual simulation was investigated on the control strategy of parallel robot Taking 3D0F Delta Parallel Robot for example, in order to conveniently and rapidly achieve the control system simulation , using Simulink for simulation platform and combining with SimMechanics link, the method of modeling which translates CAD assemblies of Pro/E into SimMechanics model was presented, after that the PID controller model was designed. The experimental results show that it can provide the efficient and significant simulation platform to research the control strategy of parallel robot.%针对并联机器人控制系统比传统串联机器人更加复杂的问题,将虚拟仿真技术应用到并联机器人控制策略的研究上.以三自由度Delta并联机器人为例,为便捷高效实现其控制系统仿真,利用Simulink为仿真平台,结合SimMechanics Link接口软件,提出了三维Pro/E模型转换成SimMechanics模型的建模方法建立机械系统模型,并设计PID控制器模型进行仿真分析.结果表明,该方法为并联机器人控制策略的研究提供了高效的仿真平台,便于展开针对并联机器人特点的各种控制策略的研究.

  16. Finger muscle attachments for an OpenSim upper-extremity model.

    Directory of Open Access Journals (Sweden)

    Jong Hwa Lee

    Full Text Available We determined muscle attachment points for the index, middle, ring and little fingers in an OpenSim upper-extremity model. Attachment points were selected to match both experimentally measured locations and mechanical function (moment arms. Although experimental measurements of finger muscle attachments have been made, models differ from specimens in many respects such as bone segment ratio, joint kinematics and coordinate system. Likewise, moment arms are not available for all intrinsic finger muscles. Therefore, it was necessary to scale and translate muscle attachments from one experimental or model environment to another while preserving mechanical function. We used a two-step process. First, we estimated muscle function by calculating moment arms for all intrinsic and extrinsic muscles using the partial velocity method. Second, optimization using Simulated Annealing and Hooke-Jeeves algorithms found muscle-tendon paths that minimized root mean square (RMS differences between experimental and modeled moment arms. The partial velocity method resulted in variance accounted for (VAF between measured and calculated moment arms of 75.5% on average (range from 48.5% to 99.5% for intrinsic and extrinsic index finger muscles where measured data were available. RMS error between experimental and optimized values was within one standard deviation (S.D of measured moment arm (mean RMS error = 1.5 mm < measured S.D = 2.5 mm. Validation of both steps of the technique allowed for estimation of muscle attachment points for muscles whose moment arms have not been measured. Differences between modeled and experimentally measured muscle attachments, averaged over all finger joints, were less than 4.9 mm (within 7.1% of the average length of the muscle-tendon paths. The resulting non-proprietary musculoskeletal model of the human fingers could be useful for many applications, including better understanding of complex multi-touch and gestural movements.

  17. ModelSim/Simulink Cosimulation and FPGA Realization of a Multiaxis Motion Controller

    Directory of Open Access Journals (Sweden)

    Ying-Shieh Kung

    2015-01-01

    Full Text Available This paper is to implement a multiaxis servo controller and a motion trajectory planning within one chip. At first, SoPC (system on a programmable chip technology which is composed of an Altera FPGA (field programmable gate arrays chip and an embedded soft-core Nios II processor is taken as the development of a multiaxis motion control IC. The multiaxis motion control IC has two modules. The first module is Nios II processor which realizes the motion trajectory planning by software. It includes the step, circular, window, star, and helical motion trajectory. The second module presents a function of the multiaxis position/speed/current controller IP (intellectual property by hardware. And VHDL (VHSIC Hardware Description Language is applied to describe the multiaxis servo controller behavior. Before the FPGA realization, a cosimulation work by ModelSim/Simulink is applied to test the VHDL code. Then, this IP combined by Nios II processor will be downloaded to FPGA. Therefore, a fully digital multiaxis motion controller can be realized by a single FPGA chip. Finally, to verify the effectiveness and correctness of the proposed multiaxis motion control IP, a three-axis motion platform (XYZ table is constructed and some experimental results are presented.

  18. Development of Pre-Service and In-Service Information Management System (iSIMS)

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, H. J.; Choi, S. N.; Kim, H. N.; Kim, Y. H.; Yang, S. H. [Korea Electric Power Research Institute, Daejeon (Korea, Republic of)

    2004-08-15

    The iSTMS is a web-based integrated information system supporting Pre-Service and In-Service Inspection(PSI/ISI) processes for the nuclear power plants of KHNP(Korea Hydro and Nuclear Power Co. Ltd.). The system provides a full spectrum coverage of the inspection processes from the planning stage to the final report of examination in accordance with applicable codes, standards, and regulatory requirements. The major functions of the system includes the inspection planning, examination, reporting, project control and status reporting, resource management as well as objects search and navigation. The system also provides two dimensional or three dimensional visualization interface to identify the location and geometry of components and weld areas subject to examination in collaboration with database applications. The iSIMS is implemented with commercial software packages such as database management system, 2-D and 3-D visualization tool, etc., which provide open, updated and verified foundations. This paper describes the key functions and the technologies for the implementation of the iSIMS

  19. PetroSim - a system to simulate crowd behaviors in emergency situations

    Energy Technology Data Exchange (ETDEWEB)

    Musse, Soraia R.; Silva, Andre T. da; Hardt, Katia; Barros, Leandro M.; Tonietto, Leandro [Universidade do Vale do Rio dos Sinos (UNISINOS), Sao Leopoldo, RS (Brazil). Dept. de Ciencia da Computacao; Roth, Bruno [Instituto Nacional de Pesquisas Espaciais (INPE), Sao Jose dos Campos, SP (Brazil); Rolim, Tuerte Amaral; Melo, Ricardo U.M.; Felipe, Luiz A.B. [PETROBRAS, Natal/Fortaleza, RN/CE (Brazil). Unidade de Negocios RN/CE

    2004-07-01

    This paper presents a framework to simulate the behaviors of crowds in panic situations. The main motivation for this work is to provide to safety engineers the possibility of simulating several aspects of panic situations involving crowds in real time. To accomplish this, we propose a complete framework to model the semantically informed environment as well as the intelligent virtual agents (IVA), which form the crowd who lives in the simulated virtual city. This work includes the integration of many knowledge areas such as VR, behavioral and visualization aspects required to the development of PetroSim. (author)

  20. Quantifying Uncertainty in the Predictions of the SimSphere Land Biosphere Model in Simulating Key Parameters Characterising Earth's Energy Balance

    Science.gov (United States)

    North, Matthew; Petropoulos, George

    2014-05-01

    correspondence of the model structure to real conditions for which it had been parameterised, evidencing its ability to reproduce reasonably satisfactory the examined parameters, particularly so over flat terrain sites and specific land cover types. Given the very small number of SimSphere validation studies, our work contributes decisively towards obtaining a better understanding of the model structure and correspondence to a real world system. The latter, not only provides very important information to future model users but also is of potential key value to efforts ongoing at present by different Space Agencies examining the use of SimSphere synergistically with Earth Observation data in developing operational products at a global scale. KEYWORDS: SimSphere, Latent Heat flux, Sensible Heat fulx, Net Radiation, SVAT; Land Surface Interactions, CarboEurope.

  1. SimWIND: A Geospatial Infrastructure Model for Wind Energy Production and Transmission

    Science.gov (United States)

    Middleton, R. S.; Phillips, B. R.; Bielicki, J. M.

    2009-12-01

    Wind is a clean, enduring energy resource with a capacity to satisfy 20% or more of the electricity needs in the United States. A chief obstacle to realizing this potential is the general paucity of electrical transmission lines between promising wind resources and primary load centers. Successful exploitation of this resource will therefore require carefully planned enhancements to the electric grid. To this end, we present the model SimWIND for self-consistent optimization of the geospatial arrangement and cost of wind energy production and transmission infrastructure. Given a set of wind farm sites that satisfy meteorological viability and stakeholder interest, our model simultaneously determines where and how much electricity to produce, where to build new transmission infrastructure and with what capacity, and where to use existing infrastructure in order to minimize the cost for delivering a given amount of electricity to key markets. Costs and routing of transmission line construction take into account geographic and social factors, as well as connection and delivery expenses (transformers, substations, etc.). We apply our model to Texas and consider how findings complement the 2008 Electric Reliability Council of Texas (ERCOT) Competitive Renewable Energy Zones (CREZ) Transmission Optimization Study. Results suggest that integrated optimization of wind energy infrastructure and cost using SimWIND could play a critical role in wind energy planning efforts.

  2. Cosensitized Porphyrin System for High-Performance Solar Cells with TOF-SIMS Analysis.

    Science.gov (United States)

    Wu, Wenjun; Xiang, Huaide; Fan, Wei; Wang, Jinglin; Wang, Haifeng; Hua, Xin; Wang, Zhaohui; Long, Yitao; Tian, He; Zhu, Wei-Hong

    2017-05-17

    To date, development of organic sensitizers has been predominately focused on light harvesting, highest occupied molecular orbital and lowest unoccupied molecular orbital energy levels, and the electron transferring process. In contrast, their adsorption mode as well as the dynamic loading behavior onto nanoporous TiO2 is rarely considered. Herein, we have employed the time-of-flight secondary ion mass spectrometry (TOF-SIMS) to gain insight into the competitive dye adsorption mode and kinetics in the cosensitized porphyrin system. Using novel porphyrin dye FW-1 and D-A-π-A featured dye WS-5, the different bond-breaking mode in TOF-SIMS and dynamic dye-loading amount during the coadsorption process are well-compared with two different anchoring groups, such as benzoic acid and cyanoacrylic acid. With the bombardment mode in TOF-SIMS spectra, we have speculated that the cyano group grafts onto nanoporous TiO2 as tridentate binding for the common anchoring unit of cyanoacrylic acid and confirmed it through extensive first-principles density functional theory calculation by anchoring either the carboxyl or cyano group, which shows that the cyano group can efficiently participate in the adsorption of the WS-5 molecule onto the TiO2 nanocrystal. The grafting reinforcement interaction between the cyano group and TiO2 in WS-5 can well-explain the rapid adsorption characteristics. A strong coordinate bond between the lone pair of electrons on the nitrogen or oxygen atom and the Lewis acid sites of TiO2 can increase electron injection efficiencies with respect to those from the bond between the benzoic acid group and the Brønsted acid sites of the TiO2 surface. Upon optimization of the coadsorption process with dye WS-5, the photoelectric conversion efficiency based on porphyrin dye FW-1 is increased from 6.14 to 9.72%. The study on the adsorption dynamics of organic sensitizers with TOF-SIMS analysis might provide a new venue for improvement of cosensitized solar cells.

  3. Extending the Global Sensitivity Analysis of the SimSphere model in the Context of its Future Exploitation by the Scientific Community

    Directory of Open Access Journals (Sweden)

    George P. Petropoulos

    2015-05-01

    Full Text Available In today’s changing climate, the development of robust, accurate and globally applicable models is imperative for a wider understanding of Earth’s terrestrial biosphere. Moreover, an understanding of the representation, sensitivity and coherence of such models are vital for the operationalisation of any physically based model. A Global Sensitivity Analysis (GSA was conducted on the SimSphere land biosphere model in which a meta-modelling method adopting Bayesian theory was implemented. Initially, effects of assuming uniform probability distribution functions (PDFs for the model inputs, when examining sensitivity of key quantities simulated by SimSphere at different output times, were examined. The development of topographic model input parameters (e.g., slope, aspect, and elevation were derived within a Geographic Information System (GIS before implementation within the model. The effect of time of the simulation on the sensitivity of previously examined outputs was also analysed. Results showed that simulated outputs were significantly influenced by changes in topographic input parameters, fractional vegetation cover, vegetation height and surface moisture availability in agreement with previous studies. Time of model output simulation had a significant influence on the absolute values of the output variance decomposition, but it did not seem to change the relative importance of each input parameter. Sensitivity Analysis (SA results of the newly modelled outputs allowed identification of the most responsive model inputs and interactions. Our study presents an important step forward in SimSphere verification given the increasing interest in its use both as an independent modelling and educational tool. Furthermore, this study is very timely given on-going efforts towards the development of operational products based on the synergy of SimSphere with Earth Observation (EO data. In this context, results also provide additional support for the

  4. CoaSim: A flexible environment for simulating genetic data under coalescent models

    Directory of Open Access Journals (Sweden)

    Pedersen Christian NS

    2005-10-01

    Full Text Available Abstract Background Coalescent simulations are playing a large role in interpreting large scale intra-specific sequence or polymorphism surveys and for planning and evaluating association studies. Coalescent simulations of data sets under different models can be compared to the actual data to test the importance of different evolutionary factors and thus get insight into these. Results We have created the CoaSim application as a flexible environment for Monte Carlo simulation of various types of genetic data under equilibrium and non-equilibrium coalescent processes for a variety of applications. Interaction with the tool is through the Guile version of the Scheme scripting language. Scheme scripts for many standard and advanced applications are provided and these can easily be modified by the user for a much wider range of applications. A graphical user interface with less functionality and flexibility is also included. It is primarily intended as an exploratory and educational tool Conclusion CoaSim is a powerful tool because of its flexibility and ease of use. This is illustrated through very varied uses of the application, e.g. evaluation of association mapping methods, parametric bootstrapping, and design and choice of markers for specific questions

  5. The SIM Time Network.

    Science.gov (United States)

    Lombardi, Michael A; Novick, Andrew N; Lopez R, J Mauricio; Jimenez, Francisco; de Carlos Lopez, Eduardo; Boulanger, Jean-Simon; Pelletier, Raymond; de Carvalho, Ricardo J; Solis, Raul; Sanchez, Harold; Quevedo, Carlos Andres; Pascoe, Gregory; Perez, Daniel; Bances, Eduardo; Trigo, Leonardo; Masi, Victor; Postigo, Henry; Questelles, Anthony; Gittens, Anselm

    2011-01-01

    The Sistema Interamericano de Metrologia (SIM) is a regional metrology organization (RMO) whose members are the national metrology institutes (NMIs) located in the 34 nations of the Organization of American States (OAS). The SIM/OAS region extends throughout North, Central, and South America and the Caribbean Islands. About half of the SIM NMIs maintain national standards of time and frequency and must participate in international comparisons in order to establish metrological traceability to the International System (SI) of units. The SIM time network (SIMTN) was developed as a practical, cost effective, and technically sound way to automate these comparisons. The SIMTN continuously compares the time standards of SIM NMIs and produces measurement results in near real-time by utilizing the Internet and the Global Positioning System (GPS). Fifteen SIM NMIs have joined the network as of December 2010. This paper provides a brief overview of SIM and a technical description of the SIMTN. It presents international comparison results and examines the measurement uncertainties. It also discusses the metrological benefits that the network provides to its participants.

  6. Assimilation of ASCAT near-surface soil moisture into the French SIM hydrological model

    Directory of Open Access Journals (Sweden)

    C. Draper

    2011-06-01

    Full Text Available The impact of assimilating near-surface soil moisture into the SAFRAN-ISBA-MODCOU (SIM hydrological model over France is examined. Specifically, the root-zone soil moisture in the ISBA land surface model is constrained over three and a half years, by assimilating the ASCAT-derived surface degree of saturation product, using a Simplified Extended Kalman Filter. In this experiment ISBA is forced with the near-real time SAFRAN analysis, which analyses the variables required to force ISBA from relevant observations available before the real time data cut-off. The assimilation results are tested against ISBA forecasts generated with a higher quality delayed cut-off SAFRAN analysis. Ideally, assimilating the ASCAT data will constrain the ISBA surface state to correct for errors in the near-real time SAFRAN forcing, the most significant of which was a substantial dry bias caused by a dry precipitation bias. The assimilation successfully reduced the mean root-zone soil moisture bias, relative to the delayed cut-off forecasts, by close to 50 % of the open-loop value. The improved soil moisture in the model then led to significant improvements in the forecast hydrological cycle, reducing the drainage, runoff, and evapotranspiration biases (by 17 %, 11 %, and 70 %, respectively. When coupled to the MODCOU hydrogeological model, the ASCAT assimilation also led to improved streamflow forecasts, increasing the mean discharge ratio, relative to the delayed cut off forecasts, from 0.68 to 0.76. These results demonstrate that assimilating near-surface soil moisture observations can effectively constrain the SIM model hydrology, while also confirming the accuracy of the ASCAT surface degree of saturation product. This latter point highlights how assimilation experiments can contribute towards the difficult issue of validating remotely sensed land surface observations over large spatial scales.

  7. SIMS applications workshop. Proceedings

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1997-04-01

    The first ANSTO/AINSE SIMS Workshop drew together a mixture of Surface Analysis experts and Surface Analysis users with the concept that SIMS analysis has to be enfolded within the spectrum of surface analysis techniques and that the user should select the technique most applicable to the problem. With this concept in mind the program was structured as sessions on SIMS Facilities; Applications to Mineral Surfaces; Applications to Biological Systems, Applications to Surfaces as Semi- conductors, Catalysts and Surface Coatings; and Applications to Ceramics

  8. Serpentine Robot Model and Gait Design Using Autodesk Inventor and Simulink SimMechanics

    Science.gov (United States)

    Daniel; Iman Alamsyah, Mohammad; Erwin; Tan, Sofyan

    2014-03-01

    The authors introduce gaits of a serpentine robot with linear expansion mechanism where the robot varies its length using joints with three degrees of freedom. The 3D model of the serpentine robot is drawed in Autocad Inventor® and exported to SimMechanics® for straighforward modeling of the kinematics. The gaits are important for robots designed to explore ruins of disasters where the working spaces are very tight. For maximum flexibility of the serpentine robot, we adopted a joint design with three parallel actuators, where the joint is capable of linear movement in the forward axis, and rotational movements around two other axes. The designed linear expansion gaits is calculated for forward movement when the robot is posing straight or turning laterally.

  9. Serpentine Robot Model and Gait Design Using Autodesk Inventor and Simulink SimMechanics

    Directory of Open Access Journals (Sweden)

    Daniel

    2014-03-01

    Full Text Available The authors introduce gaits of a serpentine robot with linear expansion mechanism where the robot varies its length using joints with three degrees of freedom. The 3D model of the serpentine robot is drawed in Autocad Inventor® and exported to SimMechanics® for straighforward modeling of the kinematics. The gaits are important for robots designed to explore ruins of disasters where the working spaces are very tight. For maximum flexibility of the serpentine robot, we adopted a joint design with three parallel actuators, where the joint is capable of linear movement in the forward axis, and rotational movements around two other axes. The designed linear expansion gaits is calculated for forward movement when the robot is posing straight or turning laterally.

  10. System for the measurement and detection of electric energy losses (SIM-IV); Sistema de medicion y deteccion de perdidas de energia electrica (SIM-IV)

    Energy Technology Data Exchange (ETDEWEB)

    Vidrio L, Gilberto; Gomez L, Martin J; Castan L, Roberto [Instituto de Investigaciones Electricas, Cuernavaca, Morelos (Mexico)

    2004-07-01

    The electric utility companies worldwide suffer, in greater or lesser degree, electrical energy losses. A great percentage of these losses is mostly due to illegal appropriations of energy. The consumers, by means of illicit practices such as clandestine connections and alteration of the operation of electricity meters, carry out the energy robbery. In order to try to alleviate the problematic of electric energy losses, in their majority by illicit, the electric utility companies have implemented one or more actions. Among the most important are: Visual inspection of the metering facilities. Its purpose is to verify the condition of the traditional protections of the metering installations, such as the seals and safety rings. Detection Equipment: These are recorders of energy consumption and of faults in conductors and are used to detect illicit connections and deviations in the consumption patterns and to the electrical energy connection or to the secondary distribution network. Statistical analysis of consumption: Many electric facility companies have adapted their processing consumption reading systems to detect deviations in the of consumption patterns of their clients. This could correspond to abnormal situations. Since this country is not extraneous to the problematic of energy losses, in the Instituto de Investigaciones Electricas it was developed a System of Measurement and Detection of Losses of Electrical Energy (SIM-IV) as a result of the knowledge of the problematic obtained from the projects in the metering area and of the interaction through work meetings with personnel of the Comision Federal de Electricidad and of Luz y Fuerza del Centro (LyFC), in which concepts of advanced technology were applied for the measurement of electrical variables. The SIM-IV is a system oriented to the metering of consumption and the detection of robberies of electrical energy caused by clandestine connections and non-allowed interventions to the energy meters. Since

  11. Automation of SimSphere Land Surface Model Use as a Standalone Application and Integration With EO Data for Deriving Key Land Surface Parameters

    Science.gov (United States)

    Petropoulos, George P.; Konstas, Ioannis; Carlson, Toby N.

    2013-04-01

    Use of simulation process models has played a key role in extending our abilities to study Earth system processes and enhancing our understanding on how different components of it interplay. Use of such models combined with Earth Observation (EO) data provides a promising direction towards deriving accurately spatiotemporal estimates of key parameters characterising land surface interactions, by combining the horizontal coverage and spectral resolution of remote sensing data with the vertical coverage and fine temporal continuity of those models. SimSphere is such a software toolkit written in Java for simulating the interactions of soil, vegetation and atmosphere layers of the Earth's land surface. Its use is at present continually expanding worldwide both as an educational and as a research tool for scientific investigations. It is being used either as a stand-alone application or synergistically with EO data. Herein we present recent advancements introduced to SimSphere in different aspects of the model aiming to make its use more robust when used both as a standalone application and synergistically with EO data. We have extensively tested and updated the model code, as well as enhanced it with new functionalities. These included for example taking into account the thermal inertia variation in soil moisture, simulating additional parameters characterising land surface interactions, automating the model use when integrating it with EO data via the "triangle" method and developing batch processing operations. Use of these recently introduced to the model functionalities are illustrated herein using a variety of examples. Our work is significant to the users' community of the model and very timely, given the potential use of SimSphere in an EO-based method being under development for deriving operationally regional estimates of energy fluxes and soil moisture from EO data provided by non-commercial vendors. KEYWORDS: land surface interactions, land surface process

  12. Chemical analysis of obsidian by a SIMS/EDX combined system

    Science.gov (United States)

    Kudriavtsev, Yuriy; Gallardo, Salvador; Avendaño, Miguel; Ramírez, Georgina; Asomoza, René; Manzanilla, Linda; Beramendi, Laura

    2015-01-01

    A recently built combined EDX-SIMS system was used for a quantitative standardless analysis of obsidians. By using the novel scheme of analysis described in the paper, concentrations of 47 elements were measured. The range of concentrations analyzed varied by up to 8 orders of magnitude, from 1015 atoms/cm3 to 1023 atoms/cm3, which cannot be attained by any other analytical method based on electron or X-ray irradiations. The experimentally measured concentrations were compared with the data of XRF analysis: the data proved to differ in less than a factor of two for the majority of elements. The technique we suggest can be used to analyze almost any solid material.

  13. Chemical analysis of obsidian by a SIMS/EDX combined system

    Energy Technology Data Exchange (ETDEWEB)

    Kudriavtsev, Yuriy; Gallardo, Salvador; Avendaño, Miguel; Ramírez, Georgina; Asomoza, René [Departamento Ingeniería Eléctrica – SEES, CINVESTAV-IPN (Mexico); Manzanilla, Linda [Instituto de Investigaciones Antropológicas, UNAM (Mexico); Beramendi, Laura [Instituto de Geología, UNAM (Mexico)

    2015-01-15

    A recently built combined EDX–SIMS system was used for a quantitative standardless analysis of obsidians. By using the novel scheme of analysis described in the paper, concentrations of 47 elements were measured. The range of concentrations analyzed varied by up to 8 orders of magnitude, from 10{sup 15} atoms/cm{sup 3} to 10{sup 23} atoms/cm{sup 3}, which cannot be attained by any other analytical method based on electron or X-ray irradiations. The experimentally measured concentrations were compared with the data of XRF analysis: the data proved to differ in less than a factor of two for the majority of elements. The technique we suggest can be used to analyze almost any solid material.

  14. SimDelta global: Towards a standardised interactive model for water infrastructure development

    NARCIS (Netherlands)

    Rijcken, T.; Christopher, D.K.

    2013-01-01

    The research project ‘SimDelta’ builds on novel internet technology to support the development of the Rhine-Meuse delta water infrastructure. It has three goals: education, organisation of research and design studies, and stakeholder polling. A current question is how the SimDelta technology could b

  15. CystiSim - an agent-based model for Taenia solium transmission and control

    DEFF Research Database (Denmark)

    Braae, Uffe Christian; Devleesschauwer, Brecht; Gabriël, Sarah

    2016-01-01

    Taenia solium taeniosis/cysticercosis was declared eradicable by the International Task Force for Disease Eradication in 1993, but remains a neglected zoonosis. To assist in the attempt to regionally eliminate this parasite, we developed cystiSim, an agent-based model for T. solium transmission...

  16. In silico predictions of gastrointestinal drug absorption in pharmaceutical product development: application of the mechanistic absorption model GI-Sim.

    Science.gov (United States)

    Sjögren, Erik; Westergren, Jan; Grant, Iain; Hanisch, Gunilla; Lindfors, Lennart; Lennernäs, Hans; Abrahamsson, Bertil; Tannergren, Christer

    2013-07-16

    Oral drug delivery is the predominant administration route for a major part of the pharmaceutical products used worldwide. Further understanding and improvement of gastrointestinal drug absorption predictions is currently a highly prioritized area of research within the pharmaceutical industry. The fraction absorbed (fabs) of an oral dose after administration of a solid dosage form is a key parameter in the estimation of the in vivo performance of an orally administrated drug formulation. This study discloses an evaluation of the predictive performance of the mechanistic physiologically based absorption model GI-Sim. GI-Sim deploys a compartmental gastrointestinal absorption and transit model as well as algorithms describing permeability, dissolution rate, salt effects, partitioning into micelles, particle and micelle drifting in the aqueous boundary layer, particle growth and amorphous or crystalline precipitation. Twelve APIs with reported or expected absorption limitations in humans, due to permeability, dissolution and/or solubility, were investigated. Predictions of the intestinal absorption for different doses and formulations were performed based on physicochemical and biopharmaceutical properties, such as solubility in buffer and simulated intestinal fluid, molecular weight, pK(a), diffusivity and molecule density, measured or estimated human effective permeability and particle size distribution. The performance of GI-Sim was evaluated by comparing predicted plasma concentration-time profiles along with oral pharmacokinetic parameters originating from clinical studies in healthy individuals. The capability of GI-Sim to correctly predict impact of dose and particle size as well as the in vivo performance of nanoformulations was also investigated. The overall predictive performance of GI-Sim was good as >95% of the predicted pharmacokinetic parameters (C(max) and AUC) were within a 2-fold deviation from the clinical observations and the predicted plasma AUC

  17. Development of a Simple Remote Sensing EvapoTranspiration model (Sim-ReSET): Algorithm and model test

    Science.gov (United States)

    Sun, Zhigang; Wang, Qinxue; Matsushita, Bunkei; Fukushima, Takehiko; Ouyang, Zhu; Watanabe, Masataka

    2009-10-01

    SummaryRemote sensing (RS) has been considered as the most promising tool for evapotranspiration (ET) estimations from local, regional to global scales. Many studies have been conducted to estimated ET using RS data, however, most of them are based partially on ground observations. In this study, we developed a new dual-source Simple Remote Sensing EvapoTranspiration model (Sim-ReSET) based only on RS data. One merit of this model is that the calculation of aerodynamic resistance can be avoided by means of a reference dry bare soil and an assumption that wind speed at the upper boundary of atmospheric surface layer is homogenous, but the aerodynamic characters are still considered by means of canopy height. The other merit is that all inputs (net radiation, soil heat flux, canopy height, variables related to land surface temperature) can be potentially obtained from remote sensing data, which allows obtaining regular RS-driven ET product. For the purposes of sensitivity analysis and performance evaluation of the Sim-ReSET model without the effect of potential uncertainties and errors from remote sensing data, the Sim-ReSET model was tested only using intensive ground observations at the Yucheng ecological station in the North China Plain from 2006 to 2008. Results show that the model has a good performance for instantaneous ET estimations with a mean absolute difference (MAD) of 34.27 W/m 2 and a root mean square error (RMSE) of 41.84 W/m 2 under neutral or near-neutral atmospheric conditions. On 12 cloudless days, the MAD of daily ET accumulated from instantaneous estimations is 0.26 mm/day, and the RMSE is 0.30 mm/day.

  18. Crowded-Field Astrometry with SIM PlanetQuest. II. An Improved Instrument Model

    CERN Document Server

    Sridharan, R

    2008-01-01

    In a previous paper we described a method of estimating the single-measurement bias to be expected in astrometric observations of targets in crowded fields with the future Space Interferometry Mission (SIM). That study was based on a simplified model of the instrument and the measurement process involving a single-pixel focal plane detector, an idealized spectrometer, and continuous sampling of the fringes during the delay scanning. In this paper we elaborate on this ``instrument model'' to include the following additional complications: spectral dispersion of the light with a thin prism, which turns the instrument camera into an objective prism spectrograph; a multiple-pixel detector in the camera focal plane; and, binning of the fringe signal during scanning of the delay. The results obtained with this improved model differ in small but systematic ways from those obtained with the earlier simplified model. We conclude that it is the pixellation of the dispersed fringes on the focal plane detector which is r...

  19. Low Scale Composite Higgs Model and 1.8 $\\sim$ 2 TeV Diboson Excess

    CERN Document Server

    Bian, Ligong; Shu, Jing

    2015-01-01

    We consider a simple solution to explain the recent diboson excess observed by ATALS and CMS Collaborations in models with custodial symmetry $SU(2)_L \\times SU(2)_R \\rightarrow SU(2)_c$. The $SU(2)_L$ triplet vector boson $\\rho$ with mass range of $1.8 \\sim 2$ TeV would be produced through the Drell-Yan process with sizable diboson decay branching to account for the excess. The other $SU(2)_L \\times SU(2)_R$ bidoublet axial vector boson $a$ would cancel all deviations of electroweak obervables induced by $\\rho$ even if the SM fermions mix with some heavy vector like (composite) fermions which couple to $\\rho$ ("non-universally partially composite"), therefore allows arbitrary couplings between each SM fermion and $\\rho$. We present our model in the "General Composite Higgs" framework with $SO(5) \\times U(1)_X \\rightarrow SO(4) \\times U(1)_X$ breaking at scale $f$ and demand the first Weinberg sum rule and positive gauge boson form factors as the theoretical constraints. We find that our model can fit the dib...

  20. A provider-based water planning and management model--WaterSim 4.0--for the Phoenix Metropolitan Area.

    Science.gov (United States)

    Sampson, D A; Escobar, V; Tschudi, M K; Lant, T; Gober, P

    2011-10-01

    Uncertainty in future water supplies for the Phoenix Metropolitan Area (Phoenix) are exacerbated by the near certainty of increased, future water demands; water demand may increase eightfold or more by 2030 for some communities. We developed a provider-based water management and planning model for Phoenix termed WaterSim 4.0. The model combines a FORTRAN library with Microsoft C# to simulate the spatial and temporal dynamics of current and projected future water supply and demand as influenced by population demographics, climatic uncertainty, and groundwater availability. This paper describes model development and rationale. Water providers receive surface water, groundwater, or both depending on their portfolio. Runoff from two riverine systems supplies surface water to Phoenix while three alluvial layers that underlie the area provide groundwater. Water demand was estimated using two approaches. One approach used residential density, population projections, water duties, and acreage. A second approach used per capita water consumption and separate population growth estimates. Simulated estimates of initial groundwater for each provider were obtained as outputs from the Arizona Department of Water Resources (ADWR) Salt River Valley groundwater flow model (GFM). We compared simulated estimates of water storage with empirical estimates for modeled reservoirs as a test of model performance. In simulations we modified runoff by 80%-110% of the historical estimates, in 5% intervals, to examine provider-specific responses to altered surface water availability for 33 large water providers over a 25-year period (2010-2035). Two metrics were used to differentiate their response: (1) we examined groundwater reliance (GWR; that proportion of a providers' portfolio dependent upon groundwater) from the runoff sensitivity analysis, and (2) we used 100% of the historical runoff simulations to examine the cumulative groundwater withdrawals for each provider. Four groups of water

  1. System for the measurement and detection of electric energy losses (SIM-IV); Sistema de medicion y deteccion de perdidas de energia electrica (SIM-IV)

    Energy Technology Data Exchange (ETDEWEB)

    Vidrio L, Gilberto; Gomez L, Martin J; Castan L, Roberto [Instituto de Investigaciones Electricas, Cuernavaca, Morelos (Mexico)

    2004-07-01

    The electric utility companies worldwide suffer, in greater or lesser degree, electrical energy losses. A great percentage of these losses is mostly due to illegal appropriations of energy. The consumers, by means of illicit practices such as clandestine connections and alteration of the operation of electricity meters, carry out the energy robbery. In order to try to alleviate the problematic of electric energy losses, in their majority by illicit, the electric utility companies have implemented one or more actions. Among the most important are: Visual inspection of the metering facilities. Its purpose is to verify the condition of the traditional protections of the metering installations, such as the seals and safety rings. Detection Equipment: These are recorders of energy consumption and of faults in conductors and are used to detect illicit connections and deviations in the consumption patterns and to the electrical energy connection or to the secondary distribution network. Statistical analysis of consumption: Many electric facility companies have adapted their processing consumption reading systems to detect deviations in the of consumption patterns of their clients. This could correspond to abnormal situations. Since this country is not extraneous to the problematic of energy losses, in the Instituto de Investigaciones Electricas it was developed a System of Measurement and Detection of Losses of Electrical Energy (SIM-IV) as a result of the knowledge of the problematic obtained from the projects in the metering area and of the interaction through work meetings with personnel of the Comision Federal de Electricidad and of Luz y Fuerza del Centro (LyFC), in which concepts of advanced technology were applied for the measurement of electrical variables. The SIM-IV is a system oriented to the metering of consumption and the detection of robberies of electrical energy caused by clandestine connections and non-allowed interventions to the energy meters. Since

  2. Smart Home Based SIM900A running water automatic alarm system%基于SIM900A的智能家居跑水自动报警系统设计

    Institute of Scientific and Technical Information of China (English)

    吴翠娟

    2015-01-01

    In this paper, AT89S52 microcontroller and GSM module chip SIM900A, build a home run water system automatic alarms. System consists of evasion detection circuit, microcontroller minimum system and SIM900A SMS modules and other components. Leak detection circuit detection module raindrop raindrop sensor and signal conditioning circuit, as long as the presence of a small amount of running water, rain sensor can be detected and processed by the signal conditioning circuit, to the SCM system, the microcontroller sends SMS module SIM900A command, start module sends alarm messages to family members, and sends an alarm signal to the smart cell property alarm system.%本文采用单片机AT89S52和GSM模块芯片SIM900A,构建一款家庭跑水自动报警的系统.系统由漏税检测电路、单片机最小系统和SIM900A短信模块等组成.漏水检测电路采用雨滴传感器和信号调理电路构成的雨滴检测模块,只要存在少量跑水,雨滴传感器就可检测到,并经信号调理电路处理后,送到单片机控制系统中,单片机向SIM900A短信模块发送指令,启动模块发送报警提示短信给家庭成员,同时向智能小区中的物业报警系统发送报警信号.

  3. Discovery of a Supercluster at $z\\sim$0.91 and Testing the $\\Lambda$CDM Cosmological Model

    CERN Document Server

    Kim, J -W; Lee, S -K; Edge, A C; Hyun, M; Kim, D; Choi, C; Hong, J; Jeon, Y; Jun, H D; Karouzos, M; Kim, D; Kim, J H; Kim, Y; Park, W -K; Taak, Y C; Yoon, Y

    2016-01-01

    The $\\Lambda$CDM cosmological model successfully reproduces many aspects of the galaxy and structure formation of the universe. However, the growth of large-scale structures (LSSs) in the early universe is not well tested yet with observational data. Here, we have utilized wide and deep optical--near-infrared data in order to search for distant galaxy clusters and superclusters ($0.8sim$0.91 are confirmed in the SSA22 field. Interestingly, all of them have similar redshifts within $\\Delta z\\sim$0.01 with velocity dispersions ranging from 470 to 1300 km s$^{-1}$. Moreover, as the maximum separation is $\\sim$15 Mpc, they compose a supercluster at $z\\sim$0.91, meaning that this is one of the most massive superclusters at this redshift to date. The galaxy density map implies that the confirmed clusters are embedded in a larger structure stretchi...

  4. The Rapid Decline in Metallicity of Damped Ly-$\\alpha$ Systems at $z\\sim5$

    CERN Document Server

    Rafelski, Marc; Fumagalli, Michele; Wolfe, Arthur M; Prochaska, J Xavier

    2013-01-01

    We present evidence that the cosmological mean metallicity of neutral atomic hydrogen gas shows a sudden decrease at $z>4.7$ down to $=-2.03^{+0.09}_{-0.11}$, which is $6\\sigma$ deviant from that predicted by a linear fit to the data at lower redshifts. This measurement is made possible by the chemical abundance measurements of 8 new damped Ly-$\\alpha$ (DLA) systems at $z>4.7$ observed with the Echellette Spectrograph and Imager on the Keck II telescope, doubling the number of measurements at $z>4.7$ to 16. The sudden decrease in metallicity is possibly due to the lower ultra-violet radiation field and higher density at high redshift increasing the neutral fraction of gas inside halos, such as cold flows. This would result in a new population of presumably lower metallicity DLAs, with an increased contribution to the DLA population at higher redshifts resulting in a reduced mean metallicity. While the comoving metal mass density of DLAs, $\\rho_{\\rm metals}(z)_{\\rm DLA}$, is flat out to $z\\sim4.3$, there is ev...

  5. Description of nuclei in the A$\\sim$100 mass region with the interacting boson model

    CERN Document Server

    Böyükata, M; Uluer, I

    2010-01-01

    Even--even nuclei in the $A\\sim100$ mass region are investigated within the framework of the interacting boson model-1 (\\mbox{IBM-1}). The study includes energy spectra and electric quadrupole transition properties of zirconium, molybdenum, ruthenium and palladium isotopes with neutron number $N\\geq52$. A global parametrization of the \\mbox{IBM-1} Hamiltonian is found leading to a description of about 300 collective levels in 30 nuclei with a root-mean-square deviation from the observed level energies of 120~keV. The importance of the $d_{5/2}$ subshell closure at neutron number $N=56$ is pointed out. The geometric character of the nuclei can be visualized by plotting the potential energy surface $V(\\beta,\\gamma)$ obtained from the \\mbox{IBM-1} Hamiltonian in the classical limit. The parametrization established on the basis of known elements is used to predict properties of the unknown, neutron-rich isotopes $^{106}$Zr, $^{112}$Mo, $^{116}$Ru and $^{122}$Pd.

  6. The role of public policies in reducing smoking prevalence: results from the Michigan SimSmoke tobacco policy simulation model.

    Science.gov (United States)

    Levy, David T; Huang, An-Tsun; Havumaki, Joshua S; Meza, Rafael

    2016-05-01

    Michigan has implemented several of the tobacco control policies recommended by the World Health Organization MPOWER goals. We consider the effect of those policies and additional policies consistent with MPOWER goals on smoking prevalence and smoking-attributable deaths (SADs). The SimSmoke tobacco control policy simulation model is used to examine the effect of past policies and a set of additional policies to meet the MPOWER goals. The model is adapted to Michigan using state population, smoking, and policy data starting in 1993. SADs are estimated using standard attribution methods. Upon validating the model, SimSmoke is used to distinguish the effect of policies implemented since 1993 against a counterfactual with policies kept at their 1993 levels. The model is then used to project the effect of implementing stronger policies beginning in 2014. SimSmoke predicts smoking prevalence accurately between 1993 and 2010. Since 1993, a relative reduction in smoking rates of 22 % by 2013 and of 30 % by 2054 can be attributed to tobacco control policies. Of the 22 % reduction, 44 % is due to taxes, 28 % to smoke-free air laws, 26 % to cessation treatment policies, and 2 % to youth access. Moreover, 234,000 SADs are projected to be averted by 2054. With additional policies consistent with MPOWER goals, the model projects that, by 2054, smoking prevalence can be further reduced by 17 % with 80,000 deaths averted relative to the absence of those policies. Michigan SimSmoke shows that tobacco control policies, including cigarette taxes, smoke-free air laws, and cessation treatment policies, have substantially reduced smoking and SADs. Higher taxes, strong mass media campaigns, and cessation treatment policies would further reduce smoking prevalence and SADs.

  7. CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models

    DEFF Research Database (Denmark)

    Mailund; Schierup, Mikkel Heide; Pedersen, Christian Nørgaard Storm

    2005-01-01

    get insight into these. Results We have created the CoaSim application as a flexible environment for Monte various types of genetic data under equilibrium and non-equilibrium coalescent variety of applications. Interaction with the tool is through the Guile version scripting language. Scheme scripts...... for many standard and advanced applications these can easily be modified by the user for a much wider range of applications. interface with less functionality and flexibility is also included. It is primarily exploratory and educational tool. Conclusions CoaSim is a powerful tool because of its flexibility...

  8. Demonstration of the Recent Additions in Modeling Capabilities for the WEC-Sim Wave Energy Converter Design Tool: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Tom, N.; Lawson, M.; Yu, Y. H.

    2015-03-01

    WEC-Sim is a mid-fidelity numerical tool for modeling wave energy conversion (WEC) devices. The code uses the MATLAB SimMechanics package to solve the multi-body dynamics and models the wave interactions using hydrodynamic coefficients derived from frequency domain boundary element methods. In this paper, the new modeling features introduced in the latest release of WEC-Sim will be presented. The first feature discussed is the conversion of the fluid memory kernel to a state-space approximation that provides significant gains in computational speed. The benefit of the state-space calculation becomes even greater after the hydrodynamic body-to-body coefficients are introduced as the number of interactions increases exponentially with the number of floating bodies. The final feature discussed is the capability toadd Morison elements to provide additional hydrodynamic damping and inertia. This is generally used as a tuning feature, because performance is highly dependent on the chosen coefficients. In this paper, a review of the hydrodynamic theory for each of the features is provided and successful implementation is verified using test cases.

  9. SimVascular 2.0: an Integrated Open Source Pipeline for Image-Based Cardiovascular Modeling and Simulation

    Science.gov (United States)

    Lan, Hongzhi; Merkow, Jameson; Updegrove, Adam; Schiavazzi, Daniele; Wilson, Nathan; Shadden, Shawn; Marsden, Alison

    2015-11-01

    SimVascular (www.simvascular.org) is currently the only fully open source software package that provides a complete pipeline from medical image based modeling to patient specific blood flow simulation and analysis. It was initially released in 2007 and has contributed to numerous advances in fundamental hemodynamics research, surgical planning, and medical device design. However, early versions had several major barriers preventing wider adoption by new users, large-scale application in clinical and research studies, and educational access. In the past years, SimVascular 2.0 has made significant progress by integrating open source alternatives for the expensive commercial libraries previously required for anatomic modeling, mesh generation and the linear solver. In addition, it simplified the across-platform compilation process, improved the graphical user interface and launched a comprehensive documentation website. Many enhancements and new features have been incorporated for the whole pipeline, such as 3-D segmentation, Boolean operation for discrete triangulated surfaces, and multi-scale coupling for closed loop boundary conditions. In this presentation we will briefly overview the modeling/simulation pipeline and advances of the new SimVascular 2.0.

  10. Wave–ice interactions in the neXtSIM sea-ice model

    Directory of Open Access Journals (Sweden)

    T. D. Williams

    2017-09-01

    Full Text Available In this paper we describe a waves-in-ice model (WIM, which calculates ice breakage and the wave radiation stress (WRS. This WIM is then coupled to the new sea-ice model neXtSIM, which is based on the elasto-brittle (EB rheology. We highlight some numerical issues involved in the coupling and investigate the impact of the WRS, and of modifying the EB rheology to lower the stiffness of the ice in the area where the ice has broken up (the marginal ice zone or MIZ. In experiments in the absence of wind, we find that wind waves can produce noticeable movement of the ice edge in loose ice (concentration around 70 % – up to 36 km, depending on the material parameters of the ice that are used and the dynamical model used for the broken ice. The ice edge position is unaffected by the WRS if the initial concentration is higher (≳ 0.9. Swell waves (monochromatic waves with low frequency do not affect the ice edge location (even for loose ice, as they are attenuated much less than the higher-frequency components of a wind wave spectrum, and so consequently produce a much lower WRS (by about an order of magnitude at least.In the presence of wind, we find that the wind stress dominates the WRS, which, while large near the ice edge, decays exponentially away from it. This is in contrast to the wind stress, which is applied over a much larger ice area. In this case (when wind is present the dynamical model for the MIZ has more impact than the WRS, although that effect too is relatively modest. When the stiffness in the MIZ is lowered due to ice breakage, we find that on-ice winds produce more compression in the MIZ than in the pack, while off-ice winds can cause the MIZ to be separated from the pack ice.

  11. Application of SIM-air modeling tools to assess air quality in Indian cities

    Science.gov (United States)

    Guttikunda, Sarath K.; Jawahar, Puja

    2012-12-01

    A prerequisite to an air quality management plan for a city is some idea of the main sources of pollution and their contributions for a city. This paper presents the results of an application of the SIM-air modeling tool in six Indian cities - Pune, Chennai, Indore, Ahmedabad, Surat, and Rajkot. Using existing and publicly available data, we put together a baseline of multi-pollutant emissions for each of the cities and then calculate concentrations, health impacts, and model alternative scenarios for 2020. The measured annual PM10 (particulate matter with aerodynamic diameter less than 10 micron meter) concentrations in μg m-3 averaged 94.7 ± 45.4 in Pune, 73.1 ± 33.7 in Chennai, 118.8 ± 44.3 in Indore, 94.0 ± 20.4 in Ahmedabad, 89.4 ± 12.1 in Surat, and 105.0 ± 25.6 in Rajkot, all exceeding the annual standard of 60 μg m-3. The PM10 inventory in tons/year for the year 2010 of 38,400 in Pune, 50,200 in Chennai, 18,600 in Indore, 31,900 in Ahmedabad, 20,000 in Surat, and 14,000 in Rajkot, is further spatially segregated into 1 km grids and includes all known sources such as transport, road dust, residential, power plants, industries (including the brick kilns), waste burning, and diesel generator sets. We use the ATMoS chemical transport model to validate the emissions inventory and estimate an annual premature mortality due to particulate pollution of 15,200 for the year 2010 for the six cities. Of the estimated 21,400 premature deaths in the six cities in 2020, we estimate that implementation of the six interventions in the transport and brick kiln sectors, can potentially save 5870 lives (27%) annually and result in an annual reduction of 16.8 million tons of carbon dioxide emissions in the six cities.

  12. An electrostatic quadrupole doublet focusing system for MeV heavy ions in MeV-SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Seki, T., E-mail: seki@sakura.nucleng.kyoto-u.ac.jp [Department of Nuclear Engineering, Kyoto Univ., Sakyo, 606-8501 Kyoto (Japan); CREST, Japan Science and Technology Agency (JST), Chiyoda, 102-0075 Tokyo (Japan); Shitomoto, S.; Nakagawa, S. [Department of Nuclear Engineering, Kyoto Univ., Sakyo, 606-8501 Kyoto (Japan); Aoki, T. [Department of Electronic Science and Engineering, Kyoto Univ., Nishikyo, 615-8510 Kyoto (Japan); CREST, Japan Science and Technology Agency (JST), Chiyoda, 102-0075 Tokyo (Japan); Matsuo, J. [Quantum Science and Engineering Center, Kyoto Univ., Uji, 611-0011 Kyoto (Japan); CREST, Japan Science and Technology Agency (JST), Chiyoda, 102-0075 Tokyo (Japan)

    2013-11-15

    The importance of imaging mass spectrometry (MS) for visualizing the spatial distribution of molecular species in biological tissues and cells is growing. In conventional SIMS with keV-energy ion beams, elastic collisions occur between projectiles and atoms in constituent molecules. The collisions produce fragments, making acquisition of molecular information difficult. In contrast, MeV-energy ion beams excite electrons near the surface and enhance the ionization of high-mass molecules, hence, fragment suppressed SIMS spectrum of ionized molecules can be obtained. This work is a further step on our previous report on the successful development of a MeV secondary ion mass spectrometry (MeV-SIMS) for biological samples. We have developed an electrostatic quadrupole doublet (EQ doublet) focusing system, made of two separate lenses, Q1 and Q2, to focus the MeV heavy ion beam and reduce measurement time. A primary beam of 6 MeV Cu{sup 4+} was focused with this EQ doublet. We applied 1120 V to the Q1 lens and 1430 V to the Q2 lens, and the current density increased by a factor of about 60. Using this arrangement, we obtained an MeV-SIMS image of 100 × 100 pixels of cholesterol-OH{sup +} of cerebellum (m/z = 369.3) over a 4 mm × 4 mm field of view, with a pixel size of 40 μm within 5 min, showing that our EQ doublet reduces the measurement time of current imaging by a factor of about 30.

  13. An electrostatic quadrupole doublet focusing system for MeV heavy ions in MeV-SIMS

    Science.gov (United States)

    Seki, T.; Shitomoto, S.; Nakagawa, S.; Aoki, T.; Matsuo, J.

    2013-11-01

    The importance of imaging mass spectrometry (MS) for visualizing the spatial distribution of molecular species in biological tissues and cells is growing. In conventional SIMS with keV-energy ion beams, elastic collisions occur between projectiles and atoms in constituent molecules. The collisions produce fragments, making acquisition of molecular information difficult. In contrast, MeV-energy ion beams excite electrons near the surface and enhance the ionization of high-mass molecules, hence, fragment suppressed SIMS spectrum of ionized molecules can be obtained. This work is a further step on our previous report on the successful development of a MeV secondary ion mass spectrometry (MeV-SIMS) for biological samples. We have developed an electrostatic quadrupole doublet (EQ doublet) focusing system, made of two separate lenses, Q1 and Q2, to focus the MeV heavy ion beam and reduce measurement time. A primary beam of 6 MeV Cu4+ was focused with this EQ doublet. We applied 1120 V to the Q1 lens and 1430 V to the Q2 lens, and the current density increased by a factor of about 60. Using this arrangement, we obtained an MeV-SIMS image of 100 × 100 pixels of cholesterol-OH+ of cerebellum (m/z = 369.3) over a 4 mm × 4 mm field of view, with a pixel size of 40 μm within 5 min, showing that our EQ doublet reduces the measurement time of current imaging by a factor of about 30.

  14. Implementing Nonlinear Buoyancy and Excitation Forces in the WEC-Sim Wave Energy Converter Modeling Tool: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Lawson, M.; Yu, Y. H.; Nelessen, A.; Ruehl, K.; Michelen, C.

    2014-05-01

    Wave energy converters (WECs) are commonly designed and analyzed using numerical models that combine multi-body dynamics with hydrodynamic models based on the Cummins Equation and linearized hydrodynamic coefficients. These modeling methods are attractive design tools because they are computationally inexpensive and do not require the use of high performance computing resources necessitated by high-fidelity methods, such as Navier Stokes computational fluid dynamics. Modeling hydrodynamics using linear coefficients assumes that the device undergoes small motions and that the wetted surface area of the devices is approximately constant. WEC devices, however, are typically designed to undergo large motions in order to maximize power extraction, calling into question the validity of assuming that linear hydrodynamic models accurately capture the relevant fluid-structure interactions. In this paper, we study how calculating buoyancy and Froude-Krylov forces from the instantaneous position of a WEC device (referred to as instantaneous buoyancy and Froude-Krylov forces from herein) changes WEC simulation results compared to simulations that use linear hydrodynamic coefficients. First, we describe the WEC-Sim tool used to perform simulations and how the ability to model instantaneous forces was incorporated into WEC-Sim. We then use a simplified one-body WEC device to validate the model and to demonstrate how accounting for these instantaneously calculated forces affects the accuracy of simulation results, such as device motions, hydrodynamic forces, and power generation.

  15. System Design Package for SIMS Prototype System 3, Solar Heating and Domestic Hot Water

    Science.gov (United States)

    1978-01-01

    A collation of documents and drawings are presented that describe a prototype solar heating and hot water system using liquid flat plate collectors and a gas or electric furnace energy subsystem. The system was designed for installation into a single-family dwelling. The description, performance specification, subsystem drawings, verification plan/procedure, and hazard analysis of the system are packaged for evaluation of the system with information sufficient to assemble a similar system.

  16. System design package for SIMS prototype system 4, solar heating and domestic hot water

    Science.gov (United States)

    1978-01-01

    The system consisted of a modular designed prepackaged solar unit, containing solar collectors, a rock storage container, blowers, dampers, ducting, air-to-water heat exchanger, DHW preheat tank, piping, and system controls. The system was designed to be installed adjacent to a small single family dwelling. The description, performance specification, subsystem drawings, verification plan/procedure, and hazard analysis of the system were packaged for evaluation.

  17. BioFET-SIM

    DEFF Research Database (Denmark)

    Hediger, M. R.; Martinez, K. L.; Nygård, J.

    2013-01-01

    signals through its web-based interface www.biofetsim.org. The model also allows for predictions of the effects of changes in the experimental setup on the sensor signal. After an introduction to nanowire-based FET biosensors, this chapter reviews the theoretical basis of BioFET-SIM models describing both...... single and multiple charges on the analyte. Afterwards the usage of the interface and its relative command line version is briefly shown. Finally, possible applications of the BioFET-SIM model are presented. Among the possible uses of the interface, the effects on the predicted signal of pH, buffer ionic...... strength, analyte concentration, and analyte relative orientation on nanowire surface are illustrated. Wherever possible, a comparison to experimental data available in literature is given, displaying the potential of BioFETSIM for interpreting experimental results....

  18. System design package for SIMS Prototype System 2, solar hot water

    Energy Technology Data Exchange (ETDEWEB)

    1977-12-01

    This report is a collection of documents and drawings that describe a solar hot water system. The necessary information to evaluate the design and with information sufficient to assemble a similar system is presented. The International Business Machines Corporation developed prototype system 2 solar hot water for use in a single family dwelling. The system has been installed in Building Number 20, which is a single family residence on the grounds of the Veterans Administration Hospital at Togus, Maine. It consists of the following subsystems: collector, storage, energy transport, and control. It is a design with wide-spread application potential with only slight adjustments necessary in system size.

  19. Evaluation of Anorthite Glass Standards for High Precision SIMS Al-Mg Dating of Early Solar System Materials

    Science.gov (United States)

    Kita, N.; Fournelle, J.; Mendybaev, R.; Knight, K.; Davis, A. M.; Richter, F. M.; Ushikubo, T.

    2009-12-01

    The decay of extinct nuclide 26Al to daughter nuclide 26Mg (half life of 7.3×105y) is considered to be a useful chronometer for the early solar system. The initial 26Al/26Al ratio of the solar system is estimated to be ~5×10-5 from the analyses of Ca, Al-rich refractory inclusions (CAIs) in primitive meteorites by the linear regression of multiple data on 26Al/26Mg vs. 26Mg/26Mg isochron diagram. Anorthite grains in CAIs show high 26Al/26Mg ratios (~400) with an excess of 26Mg/26Mg ratios as high as 100‰. By using the WiscSIMS IMS-1280, the Mg isotope ratio of anorthite can be obtained with a precision of better than 1‰, from which we can resolve time differences of only 10 ky among formation of individual CAIs. In order to obtain highly precise 26Al-26Mg isochrons, it is important to determine an accurate SIMS relative sensitivity factor (RSF) of 26Al/26Mg ratios from the analyses of plagioclase standard. However, uncertainties of Mg concentration in plagioclase standards are typically ~10% due to low concentrations of MgO (≤0.1wt.%) in naturally occurring plagioclase crystals. In order to obtain accurate initial 26Al/26Al ratios of CAIs, anorthite glass standards were prepared at the University of Chicago with MgO contents of 0.1%, 0.5% and 1.0 wt.% by melting Mg-, Ca-, Al-, and Si-oxides at 1620°C in N2 for 22 to 35 hours. Major and minor element concentrations (including MgO) of the glasses were analyzed precisely by EPMA (Cameca SX51 at University of Wisconsin). Operating conditions were 15 kV, 10 nA, 10 μm wide beam; for Mg, both peak and background were measured for 30 seconds each, and differential PHA was used. A synthetic akermanite standard was used, and a blank correction (0.01 wt% Mg) in Probe for EPMA software was applied. By obtaining ~30 EPMA point analyses for esch glass, MgO concentrations in these glasses were determined with precision of 1-3%. The homogeneity of Mg concentrations in the individual glass were examined by using SIMS and

  20. 基于SimMechanics模块的转盘轴承实验台模型的建立%The Establishment of Wheel Bearing Test Bench Model Based on SimMechanics Module

    Institute of Scientific and Technical Information of China (English)

    金美付; 鲜洁宇; 张正伟; 吴洪彬

    2014-01-01

    转盘轴承实验台是一种根据转盘轴承工作特点设计的专用实验设备。本文采用Simulink软件中的SimMechanics模块搭建实验台机械结构的仿真模型。仿真模型是在有限元计算的基础上,将实验台结构简化为线性弹簧。仿真模型中的转盘轴承采用Zupan等提供的解析法简化。通过滚珠最大应力验证仿真模型结果的正确性,参照标准是美国国家可再生能源实验室提供的经验公式。SimMechanics仿真结果与经验公式、有限元模型结果比较,误差在10%以内,误差可以接受。SimMechanics仿真模型的精度不及有限元模型,但仿真模型实现了机械系统与控制系统在同一仿真环境中搭建,并且仿真模型的计算成本远小于有限元模型。%Wheel bearing test bench is a special experiment equipment based on the work features of wheel bearing. This paper uses SimMechanics module of Simulink software to build bench mechanical structure simulation models. The simulation model simplifies the bench to a linear spring on the basis of finite element method. The wheel bearing of simulation model uses analytical method provided by Zupan. The correctness of simulation results is validated by balls maximum stress, the reference standard is the empirical formula provided by U.S. National Renewable Energy Laboratory. Compared to SimMechanics simulation results, empirical formula and finite element model results, the error is acceptable when less than 10%.

  1. SimDelta”—Inquiry into an Internet-Based Interactive Model for Water Infrastructure Development in The Netherlands

    Directory of Open Access Journals (Sweden)

    Nadine Slootjes

    2012-03-01

    Full Text Available The Dutch Delta Program is currently developing new government policies for flood protection and fresh water supply. Decision support instruments have to address the program’s technical and political complexity. The water system functions are highly interwoven and would benefit from an integrated approach on a national level, with decisions supported by a scientific Systems Analysis. Politically, there is a tendency towards broad participation and decentralization, and decision-making is typically supported by Conflict Resolution methods. To connect these two sides of the Delta Program’s task, an outline is presented of an internet community-based interactive instrument, preliminarily named SimDelta. On-line interactive maps and elements of serious gaming intuitively provide local Delta Program participants insight into the interaction between scenarios, problems, and solutions. SimDelta uses the internet to more frequently and efficiently present conceptual designs by architects and engineers to the Delta Program stakeholders, record their preferences, and “crowdsource” corrections, improvements and new ideas.

  2. Simulation modeling of cloud computing for smart grid using CloudSim

    Directory of Open Access Journals (Sweden)

    Sandeep Mehmi

    2017-05-01

    Full Text Available In this paper a smart grid cloud has been simulated using CloudSim. Various parameters like number of virtual machines (VM, VM Image size, VM RAM, VM bandwidth, cloudlet length, and their effect on cost and cloudlet completion time in time-shared and space-shared resource allocation policy have been studied. As the number of cloudlets increased from 68 to 178, greater number of cloudlets completed their execution with high cloudlet completion time in time-shared allocation policy as compared to space-shared allocation policy. Similar trend has been observed when VM bandwidth is increased from 1 Gbps to 10 Gbps and VM RAM is increased from 512 MB to 5120 MB. The cost of processing increased linearly with respect to increase in number of VMs, VM Image size and cloudlet length.

  3. Fragmentation at and above surfaces in SIMS

    Science.gov (United States)

    Luxembourg, Stefan L.; Heeren, Ron M. A.

    2006-07-01

    Matrix-enhanced SIMS and metal-assisted SIMS are successfully employed to increase the organic ion yield in SIMS. In this study we compare kinetic energy distributions obtained for the SIMS, ME-SIMS and MetA-SIMS sputtering of molecular ions. In comparison to the SIMS kinetic energy distributions, those obtained for ME-SIMS display larger energy deficits, indicative of entrainment of analyte ions by matrix molecules or collisions taking place above the sample surface. In the case of MetA-SIMS high energy broadening of the distributions is observed, resulting from the high stopping power of the gold used. A selection of substituted benzylpyridinium salts is used to investigate the effect of internal energy reduction in ME-SIMS. Kinetic energy distributions were used to separate the daughter ions formed in the sample region from those resulting from unimolecular decay on nanosecond timescales, in the first tens of micrometers above the sample surface. The longer-timescale decay was monitored by changing the energy acceptance window of the mass spectrometer used. From the decay rate constants internal energies of the precursor ions decaying on nanosecond timescales were determined using RRKM theory. Within the framework of the precursor model the results indicate an extension of the collision cascade over a wider area than in SIMS.

  4. CalSimHydro Tool - A Web-based interactive tool for the CalSim 3.0 Hydrology Prepropessor

    Science.gov (United States)

    Li, P.; Stough, T.; Vu, Q.; Granger, S. L.; Jones, D. J.; Ferreira, I.; Chen, Z.

    2011-12-01

    used to run CalSim 3.0. The CalSimHydro tool streamlines the complicated steps to configure and run the hydrology preprocessor by providing a user-friendly visual interface and back-end services to validate user inputs and manage the model execution. It is a powerful addition to the new CalSim 3.0 system.

  5. An improved OpenSim gait model with multiple degrees of freedom knee joint and knee ligaments.

    Science.gov (United States)

    Xu, Hang; Bloswick, Donald; Merryweather, Andrew

    2015-08-01

    Musculoskeletal models are widely used to investigate joint kinematics and predict muscle force during gait. However, the knee is usually simplified as a one degree of freedom joint and knee ligaments are neglected. The aim of this study was to develop an OpenSim gait model with enhanced knee structures. The knee joint in this study included three rotations and three translations. The three knee rotations and mediolateral translation were independent, with proximodistal and anteroposterior translations occurring as a function of knee flexion/extension. Ten elastic elements described the geometrical and mechanical properties of the anterior and posterior cruciate ligaments (ACL and PCL), and the medial and lateral collateral ligaments (MCL and LCL). The three independent knee rotations were evaluated using OpenSim to observe ligament function. The results showed that the anterior and posterior bundles of ACL and PCL (aACL, pACL and aPCL, pPCL) intersected during knee flexion. The aACL and pACL mainly provided force during knee flexion and adduction, respectively. The aPCL was slack throughout the range of three knee rotations; however, the pPCL was utilised for knee abduction and internal rotation. The LCL was employed for knee adduction and rotation, but was slack beyond 20° of knee flexion. The MCL bundles were mainly used during knee adduction and external rotation. All these results suggest that the functions of knee ligaments in this model approximated the behaviour of the physical knee and the enhanced knee structures can improve the ability to investigate knee joint biomechanics during various gait activities.

  6. [SIMS REIN: a multi-source information system for end-stage renal disease].

    Science.gov (United States)

    Landais, Paul; Simonet, Ana; Guillon, Didier; Jacquelinet, Christian; Ben Saïd, Mohamed; Mugnier, Claude; Simonet, Michel

    2002-04-01

    In France, the prevalence of End-Stage Renal Disease (ESRD) is not precisely known. The sources of information are scattered and not coordinated. Consequently, care is ill adapted to meet the demand. The Multi-Source Information System is the basis of the Renal Epidemiology and Information Network (REIN). It is dedicated to improve and organise our medical and epidemiological knowledge of ESRD and to aid public health decision-making in this area. The proposed approach is based on the datawarehouses. This model allows a unified vision of scattered data into distinct databases, for a better management, be it particular (patient follow-up) or global (regional follow-up), with a finality of aid in decision-making. Several categories of problems were considered: the global conception of the information system, the organisation of the datawarehouse, which offers different viewpoints of the data, the integration of heterogeneous data coming from different sources, data exchange and definition of a specific ontology.

  7. SIM Configuration Evolution

    Science.gov (United States)

    Aaron, Kim M.

    2000-01-01

    The Space Interferometry Mission (SIM) is a space-based 10 m baseline Michelson interferometer. Planned for launch in 2005 aboard a Delta III launch vehicle, or equivalent, its primary objective is to measure the positions of stars and other celestial objects with an unprecedented accuracy of 4 micro arc seconds. With such an instrument, tremendous advancement can be expected in our understanding of stellar and galactic dynamics. Using triangulation from opposite sides of the orbit around the sun (i.e. by using parallax) one can measure the distance to any observable object in our galaxy. By directly measuring the orbital wobble of nearby stars, the mass and orbit of planets can be determined over a wide range of parameters. The distribution of velocity within nearby galaxies will be measurable. Observations of these and other objects will improve the calibration of distance estimators by more than an order of magnitude. This will permit a much better determination of the Hubble Constant as well as improving our overall understanding of the evolution of the universe. SIM has undergone several transformations, especially over the past year and a half since the start of Phase A. During this phase of a project, it is desirable to perform system-level trade studies, so the substantial evolution of the design that has occurred is quite appropriate. Part of the trade-off process has addressed two major underlying architectures: SIM Classic; and Son of SIM. The difference between these two architectures is related to the overall arrangement of the optical elements and the associated metrology system. Several different configurations have been developed for each architecture. Each configuration is the result of design choices that are influenced by many competing considerations. Some of the more important aspects will be discussed. The Space Interferometry Mission has some extremely challenging goals: millikelvin thermal stability, nanometer stabilization of optics

  8. SimProp v2r3

    CERN Document Server

    Aloisio, Roberto; di Matteo, Armando; Grillo, Aurelio; Petrera, Sergio; Salamida, Francesco

    2016-01-01

    We introduce the a version of SimProp, a Monte Carlo code for simulating the propagation of ultra-high energy cosmic rays in intergalactic space. This version, SimProp v2r3, allows the choice of many more models for the extragalactic background light spectrum and evolution and photodisintegration cross sections and branching ratios than previous versions of SimProp.

  9. Simulation Study of FSC Racing Car Modeling and Handling Stability Based on CarSim%基于CarSim的FSC赛车建模与操纵稳定性仿真研究

    Institute of Scientific and Technical Information of China (English)

    贾丽娟; 韩忠浩; 李刚; 冯莉原; 张杨; 王运辉

    2015-01-01

    针对FSC赛车开发过程中的操纵稳定性分析,论文基于车辆系统动力学仿真软件CarSim进行建模与仿真研究。应用CarSim建立了包含车体、轮胎、转向系统、悬架系统、制动系统及传动系统的FSC赛车整车动力学模型,并应用3D软件绘制三维车身、尾翼和发动机模型导入到CarSim中实现整车动画仿真。在CarSim中按照比赛要求设置方向盘角阶跃输入转向瞬态响应试验工况和蛇形试验工况进行 FSC 赛车操纵稳定性仿真分析。仿真结果表明:开发的FSC赛车具有良好的操纵稳定性。%For the analysis of handling stability, modeling and simulation of FSC racing car based on dynamics simulation software CarSim were studied. FSC racing vehicle dynamics model was established by CarSim, which includes body, tires, steering systems, suspension systems, brake systems and driveline. The three-dimensional body, tail and engine models were built by 3D software and import to CarSim for animated simulation. The steering step input transient response test and snake test were set in the CarSim according to the racing requirements. The simulation results show that the developed FSC racing car has good handling stability.

  10. SIMS: addressing the problem of heterogeneity in databases

    Science.gov (United States)

    Arens, Yigal

    1997-02-01

    The heterogeneity of remotely accessible databases -- with respect to contents, query language, semantics, organization, etc. -- presents serious obstacles to convenient querying. The SIMS (single interface to multiple sources) system addresses this global integration problem. It does so by defining a single language for describing the domain about which information is stored in the databases and using this language as the query language. Each database to which SIMS is to provide access is modeled using this language. The model describes a database's contents, organization, and other relevant features. SIMS uses these models, together with a planning system drawing on techniques from artificial intelligence, to decompose a given user's high-level query into a series of queries against the databases and other data manipulation steps. The retrieval plan is constructed so as to minimize data movement over the network and maximize parallelism to increase execution speed. SIMS can recover from network failures during plan execution by obtaining data from alternate sources, when possible. SIMS has been demonstrated in the domains of medical informatics and logistics, using real databases.

  11. Sims, Christopher Albert (born 1942)

    NARCIS (Netherlands)

    Boumans, Marcel

    2015-01-01

    Christopher Sims is one of the leaders in time-series econometrics and empirical macroeconomics and is well known for introducing the VAR approach to econometrics and macroeconomic modelling. Sims’ main contribution to empirical macroeconomics was to show how macro-econometric modeling should be rev

  12. Sims, Christopher Albert (born 1942)

    NARCIS (Netherlands)

    Boumans, Marcel

    2015-01-01

    Christopher Sims is one of the leaders in time-series econometrics and empirical macroeconomics and is well known for introducing the VAR approach to econometrics and macroeconomic modelling. Sims’ main contribution to empirical macroeconomics was to show how macro-econometric modeling should be

  13. Microcomputer Based School Information Management Systems (SIMS) in Alberta Junior and Senior High Schools. Final Report.

    Science.gov (United States)

    Wright, P.; Valbonesi, P.

    This report comprises a detailed evaluation of three IBM microcomputer-based school information management systems: Student Information and Records System (SIRS) by Management Information Group, The School System (TSS) by Columbia Computing Services, and Computer Educational Management Accounting System (CEMAS) by Computerlib. These three systems…

  14. The chemistry of the most metal-rich damped Lyman $\\alpha$ systems at z$\\sim2$ II. Context with the Local Group

    CERN Document Server

    Berg, Trystyn A M; Prochaska, J Xavier; Venn, Kim A; Dessauges-Zavadsky, Miroslava

    2015-01-01

    Using our sample of the most metal-rich damped Lyman $\\alpha$ systems (DLAs) at z$\\sim2$, and two literature compilations of chemical abundances in 341 DLAs and 2818 stars, we present an analysis of the chemical composition of DLAs in the context of the Local Group. The metal-rich sample of DLAs at z$\\sim2$ probes metallicities as high as the Galactic disc and the most metal-rich dwarf spheroidals (dSphs), permitting an analysis of many elements typically observed in DLAs (Fe, Zn, Cr, Mn, Si, and S) in comparison to stellar abundances observed in the Galaxy and its satellites (in particular dSphs). Our main conclusions are: (1) non-solar [Zn/Fe] abundances in metal-poor Galactic stars and in dSphs over the full metallicity range probed by DLAs, suggest that Zn is not a simple proxy for Fe in DLAs and therefore not a suitable indicator of dust depletion. After correcting for dust depletion, the majority of DLAs have subsolar [Zn/Fe] similar to dSphs; (2) at [Fe/H]$\\sim-0.5$, a constant [Mn/Fe]$\\sim-0.5$ and ne...

  15. A user's guide to the GoldSim/BLT-MS integrated software package:a low-level radioactive waste disposal performance assessment model.

    Energy Technology Data Exchange (ETDEWEB)

    Knowlton, Robert G.; Arnold, Bill Walter; Mattie, Patrick D.

    2007-03-01

    Sandia National Laboratories (Sandia), a U.S. Department of Energy National Laboratory, has over 30 years experience in the assessment of radioactive waste disposal and at the time of this publication is providing assistance internationally in a number of areas relevant to the safety assessment of radioactive waste disposal systems. In countries with small radioactive waste programs, international technology transfer program efforts are often hampered by small budgets, schedule constraints, and a lack of experienced personnel. In an effort to surmount these difficulties, Sandia has developed a system that utilizes a combination of commercially available software codes and existing legacy codes for probabilistic safety assessment modeling that facilitates the technology transfer and maximizes limited available funding. Numerous codes developed and endorsed by the United States Nuclear Regulatory Commission (NRC) and codes developed and maintained by United States Department of Energy are generally available to foreign countries after addressing import/export control and copyright requirements. From a programmatic view, it is easier to utilize existing codes than to develop new codes. From an economic perspective, it is not possible for most countries with small radioactive waste disposal programs to maintain complex software, which meets the rigors of both domestic regulatory requirements and international peer review. Therefore, revitalization of deterministic legacy codes, as well as an adaptation of contemporary deterministic codes, provides a credible and solid computational platform for constructing probabilistic safety assessment models. This document is a reference users guide for the GoldSim/BLT-MS integrated modeling software package developed as part of a cooperative technology transfer project between Sandia National Laboratories and the Institute of Nuclear Energy Research (INER) in Taiwan for the preliminary assessment of several candidate low

  16. TelluSim: A Python Plug-in Based Computational Framework for Spatially Distributed Environmental and Earth Sciences Modelling

    Science.gov (United States)

    Willgoose, G. R.

    2008-12-01

    TelluSim is a python-based computational framework for integrating and manipulating modules written in a variety of computer languages. TelluSim consists of a main program that dynamically, at run time, assembles a series of modules. These modules can be written in any language that can be accessed by Python. Currently we have modules in Fortran and Python, with C to be supported soon. New modules are incorporated as plug-ins like done for a browser or Photoshop, simply by copying the module binary into a plug-in directory. TelluSim automatically generates a GUI for parameter and state I/O, and automatically creates the intermodule communication mechanisms needed for the computations. A decision to use Python was arrived at after detailed trials using other languages including C, Tcl/Tk and Fortran. An important aspect of the design of TelluSim was to minimise the overhead in interfacing the modules with TelluSim, and minimise any requirement for recoding of existing software, so eliminating a major disadvantage of more complex frameworks (e.g. JAMS, openMI). Several significant Fortran codes developed by the author have been incorporated as part of the design process and as proof of concept. In particular the SIBERIA landform evolution code (a high performance F90 code, including parallel capability) has been broken up into a series of TelluSim modules, so that the SIBERIA now consists of a Python script of 20 lines. These 20 lines assemble and run the underlying modules (about 50,000 lines of Fortran code). The presentation will discuss in more detail the design of TelluSim, and our experiences of the advantages and disadvantages of using Python relative to other approaches.

  17. Test-driven modeling of embedded systems

    DEFF Research Database (Denmark)

    Munck, Allan; Madsen, Jan

    2015-01-01

    To benefit maximally from model-based systems engineering (MBSE) trustworthy high quality models are required. From the software disciplines it is known that test-driven development (TDD) can significantly increase the quality of the products. Using a test-driven approach with MBSE may have a sim...

  18. Recommended Henry’s Law Constants for Non-Groundwater Pathways Models in GoldSim

    Energy Technology Data Exchange (ETDEWEB)

    Dyer, J. [Savannah River Site (SRS), Aiken, SC (United States). Savannah River National Lab. (SRNL)

    2017-06-20

    This memorandum documents the source and numerical value of Henry’s law constants for volatile radionuclides of interest used in the non-groundwater (air and radon) pathways models for the 2018 E-Area Performance Assessment.

  19. Storage Information Management System (SIMS) Spaceflight Hardware Warehousing at Goddard Space Flight Center

    Science.gov (United States)

    Kubicko, Richard M.; Bingham, Lindy

    1995-01-01

    Goddard Space Flight Center (GSFC) on site and leased warehouses contain thousands of items of ground support equipment (GSE) and flight hardware including spacecraft, scaffolding, computer racks, stands, holding fixtures, test equipment, spares, etc. The control of these warehouses, and the management, accountability, and control of the items within them, is accomplished by the Logistics Management Division. To facilitate this management and tracking effort, the Logistics and Transportation Management Branch, is developing a system to provide warehouse personnel, property owners, and managers with storage and inventory information. This paper will describe that PC-based system and address how it will improve GSFC warehouse and storage management.

  20. EASY-SIM: A Visual Simulation System Software Architecture with an ADA 9X Application Framework

    Science.gov (United States)

    1994-12-01

    P, =,c- ad C-at John Vanderburgh also helped keep my head above water. Four employees of Silicon Graphics, Inc. provided the tools for me to use Ada... devop -_ ment of software systems within a domain. Because an architecture promotes reuse at the design level, systems developers do not have to devote...de- briefing tool for the Air Force’s Red Flag,.. ,ex.rce - ,ar,,o, J. Talte,2,)-%a 1 gives the details of the research projects completed in 1993

  1. Assimilation of leaf area index and surface soil moisture satellite observations into the SIM hydrological model over France

    Science.gov (United States)

    Fairbairn, David; Calvet, Jean-Christophe; Mahfouf, Jean-Francois; Barbu, Alina

    2016-04-01

    Hydrological models have a variety of uses, including flood and drought prediction and water management. The SAFRAN-ISBA-MODCOU (SIM) hydrological model consists of three stages: An atmospheric analysis (SAFRAN) over France, which forces a land surface model (ISBA-A-gs), which then provides drainage and runoff inputs to a hydrological model (MODCOU). The river discharge from MODCOU is validated using observed river discharge over France. Data assimilation (DA) combines a short model forecast from the past with observations to improve the estimate of the model state. The ISBA-A-gs representation of soil moisture and its influence by vegetation can be improved by assimilating surface soil moisture (SSM) and leaf area index (LAI) observations respectively. The Advanced Scatterometer (ASCAT) on board the MetOP satellite measures a low-frequency microwave signal, which is used to retrieve daily SSM over France. The SPOT-VGT sensor observes LAI over France at a temporal frequency of about 10 days. The Simplified Extended Kalman (SEKF) filter combines the model and observed variables by weighting them according to their respective accuracies. Although the SEKF makes incorrect linear assumptions, past experiments have shown that it improves on the model estimates of SSM and LAI. However, due to nonlinearities in the land surface model, improvements in SSM and LAI do not imply improved soil moisture fluxes (drainage, runoff and evapotranspiration). This study indirectly examines the impact of the SEKF on the soil moisture fluxes using the MODCOU hydrological model. The ISBA-A-gs model appears to underestimate the LAI for grasslands in winter and spring, which results in an underestimation (overestimation) of evapotranspiration (drainage and runoff). The excess water flowing into the rivers and aquifers contributes to an overestimation of the MODCOU discharge. Assimilating LAI observations slightly increases the LAI analysis in winter and spring and therefore reduces the

  2. 基于SIM900A的全自动电饭煲系统的设计与实现%Research on and Realization of Automatic Rice Cooker System Based on SIM900 A

    Institute of Scientific and Technical Information of China (English)

    朱超; 高祥

    2015-01-01

    Aiming at the inconvenient remote control of ordinary rice cookers, a design scheme of automatic rice cooker based on SIM900A is proposed with improved mechanical structure.Remote communication is realized between the STM32F103 microcontroller and the user mobile phone by short messages and GPRS technology. STM32F103 controls the rice cooker according to user instructions to realize fully automated process from rice taking to cooking, real-time detection of the working states and intelligent alarm.The test results show that the system runs stably and realizes the remote control of rice cooker with a fast, smart, and timely cooking mode.%针对普通电饭煲不便远程控制问题,提出了一种基于SIM900A的全自动电饭煲设计方案。对普通电饭煲进行了机械机构的优化改进,采用短息和GPRS技术实现STM32F103单片机与用户手机远程通信, STM32F103单片机根据用户指令控制电饭煲从取米到煮饭的全自动化过程,实时检测电饭煲的工作状态并智能报警。测试结果表明,本系统运行稳定,实现了电饭煲的远程控制,形成了快捷、智能、及时的煮饭模式。

  3. The design and validation of a spatial microsimulation model of obesogenic environments for children in Leeds, UK: SimObesity.

    Science.gov (United States)

    Edwards, Kimberley L; Clarke, Graham P

    2009-10-01

    Obesogenic environments are a major explanation for the rapidly increasing prevalence in obesity. Investigating the relationship between obesity and obesogenic variables at the micro-level will increase our understanding about local differences in risk factors for obesity. SimObesity is a spatial microsimulation model designed to create micro-level estimates of obesogenic environment variables in the city of Leeds in the UK: consisting of a plethora of health, environment, and socio-economic variables. It combines individual micro-data from two national surveys with a coarse geography, with geographically finer scaled data from the 2001 UK Census, using a reweighting deterministic algorithm. This creates a synthetic population of individuals/households in Leeds with attributes from both the survey and census datasets. Logistic regression analyses identify suitable constraint variables to use. The model is validated using linear regression and equal variance t-tests. Height, weight, age, gender, and residential postcode data were collected on children aged 3-13 years in the Leeds metropolitan area, and obesity described as above the 98th centile for the British reference dataset. Geographically weighted regression is used to investigate the relationship between different obesogenic environments and childhood obesity. Validation shows that the small-area estimates were robust. The different obesogenic environments, as well as the parameter estimates from the corresponding local regression analyses, are mapped, all of which demonstrate non-stationary relationships. These results show that social capital and poverty are strongly associated with childhood obesity. This paper demonstrates a methodology to estimate health variables at the small-area level. The key to this technique is the choice of the model's input variables, which must be predictors for the output variables; this factor has not been stressed in other spatial microsimulation work. It also provides

  4. SimApp 1.8.x

    Energy Technology Data Exchange (ETDEWEB)

    2017-02-21

    System for converting DESIRE (Direct Executing Simulation in Real Time) simulation models to executable code models (C# / C++). These converted models are used as the basis for 2 products, one of which is the focus of this review: an engineering design interface for Fissile Solution Systems. ModelConverter.exe (C#) converts DESIRE model inputs to a C++ plug-in subclass. SimApp.exe (C# / C++) has a C++ dll that is a numerical integration engine that the Converted models plug into. The engineering design interface is a C# GUI that calls on the C++ dll to execute a particular converted model. The GUI allows the user to specify the length of a simulation, run the simulation, view data plots and data tables. Stability plots may also be produced and manipulated. The engineering design interface will be released as source code and executable; the model converter source is also intended for release.

  5. A simplified interventional mapping system (SIMS) for the selection of combinations of targeted treatments in non-small cell lung cancer

    OpenAIRE

    Lazar, Vladimir; Rubin, Eitan; Depil, Stephane; Pawitan, Yudi; Martini, Jean-François; Gomez-Navarro, Jesus; Yver, Antoine; Kan, Zhengyin; Dry, Jonathan R.; Kehren, Jeanne; Validire, Pierre; Rodon, Jordi; Vielh, Philippe; Ducreux, Michel; Galbraith, Susan

    2015-01-01

    Non-small cell lung cancer (NSCLC) is a leading cause of death worldwide. Targeted monotherapies produce high regression rates, albeit for limited patient subgroups, who inevitably succumb. We present a novel strategy for identifying customized combinations of triplets of targeted agents, utilizing a simplified interventional mapping system (SIMS) that merges knowledge about existent drugs and their impact on the hallmarks of cancer. Based on interrogation of matched lung tumor and normal tis...

  6. Secondary Ion Mass Spectrometry SIMS XI

    Science.gov (United States)

    Gillen, G.; Lareau, R.; Bennett, J.; Stevie, F.

    2003-05-01

    This volume contains 252 contributions presented as plenary, invited and contributed poster and oral presentations at the 11th International Conference on Secondary Ion Mass Spectrometry (SIMS XI) held at the Hilton Hotel, Walt Disney World Village, Orlando, Florida, 7 12 September, 1997. The book covers a diverse range of research, reflecting the rapid growth in advanced semiconductor characterization, ultra shallow depth profiling, TOF-SIMS and the new areas in which SIMS techniques are being used, for example in biological sciences and organic surface characterization. Papers are presented under the following categories: Isotopic SIMS Biological SIMS Semiconductor Characterization Techniques and Applications Ultra Shallow Depth Profiling Depth Profiling Fundamental/Modelling and Diffusion Sputter-Induced Topography Fundamentals of Molecular Desorption Organic Materials Practical TOF-SIMS Polyatomic Primary Ions Materials/Surface Analysis Postionization Instrumentation Geological SIMS Imaging Fundamentals of Sputtering Ion Formation and Cluster Formation Quantitative Analysis Environmental/Particle Characterization Related Techniques These proceedings provide an invaluable source of reference for both newcomers to the field and experienced SIMS users.

  7. 20-SIM code generation for PC/104 target

    NARCIS (Netherlands)

    Groothuis, Marcel

    2001-01-01

    From version 3.2, 20-Sim will contain a new tool, called C-code generation. With this tool it will be possible to generate C code from a 20-Sim model. This tool works on basis of templates. For each target, a target specific template has to be made. The goal of this project was to write a new 20-Sim

  8. Modelling and simulation of multi spindle drilling redundant SCARA robot using SolidWorks and MATLAB/SimMechanics

    Directory of Open Access Journals (Sweden)

    Saravana Mohan Mariappan

    2016-01-01

    Full Text Available Los robots son sistemas electromecánicos que necesitan enfoque mecatrónico antes de fabricarlos, esto con el fin de reducir el costo de desarrollo. En este trabajo se presenta un nuevo intento de modelado PRRP (prismáticos-revoluto-revoluto-prismático, una configuración redundante SCARA (Brazo robótico articulado de respuesta selectiva, herramienta de perforación milti-eje (MSDT usando el software CAD de SolidWorks y el estudio dinámico con la ayuda de MATLAB/SimMechanics de perforación. Un SCARA con MSDT se utiliza para perforar varios agujeros en las placas de circuito impreso (PCB y la chapa metálica. En este trabajo, el modelo de CAD 3D del robot propuesto se convierte en un diagrama de bloque SimMechanics exportando a MATLAB/SimMechanics segunda generación de tecnología de modelado y simulación. Entonces se realiza una simulación SimMechanics y utilizando su capacidad de detección de movimiento la velocidad de parámetros dinámicos y la torsión del manipulador se observa la estructura del robot variable modificado. Los resultados de la simulación indican un cambio considerable en el rendimiento dinámico para diferentes parámetros de diseño.

  9. Foreground Model and Antenna Calibration Errors in the Measurement of the Sky-Averaged $\\lambda21$ cm Signal at z$\\sim$20

    CERN Document Server

    Bernardi, G; Greenhill, L J

    2014-01-01

    The most promising near-term observable of the cosmic dark age prior to widespread reionization ($z\\sim15-200$) is the sky-averaged $\\lambda21$ cm background arising from hydrogen in the intergalactic medium. Though an individual antenna could in principle detect the line signature, data analysis must separate foregrounds that are orders of magnitude brighter than the $\\lambda21$ cm background (but that are anticipated to vary monotonically and gradually with frequency). Using more physically motivated models for foregrounds than in previous studies, we show that the intrinsic "spectral smoothness" of the foregrounds is likely not a concern, and that data analysis for an ideal antenna should be able to detect the $\\lambda21$ cm signal after deprojecting a $\\sim 5^{\\rm th}$ order polynomial in $\\log \

  10. Progress in molecular SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Borman, S.

    1987-04-15

    A review of sputtering and molecular ion emission is presented. New derivatization techniques have produced lower detection limits for molecular secondary ion mass spectrometry (SIMS). Spectra of representative organic compounds are presented.

  11. RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.

    Science.gov (United States)

    Piatkowski, Pawel; Kasprzak, Joanna M; Kumar, Deepak; Magnus, Marcin; Chojnowski, Grzegorz; Bujnicki, Janusz M

    2016-01-01

    RNA encompasses an essential part of all known forms of life. The functions of many RNA molecules are dependent on their ability to form complex three-dimensional (3D) structures. However, experimental determination of RNA 3D structures is laborious and challenging, and therefore, the majority of known RNAs remain structurally uncharacterized. To address this problem, computational structure prediction methods were developed that either utilize information derived from known structures of other RNA molecules (by way of template-based modeling) or attempt to simulate the physical process of RNA structure formation (by way of template-free modeling). All computational methods suffer from various limitations that make theoretical models less reliable than high-resolution experimentally determined structures. This chapter provides a protocol for computational modeling of RNA 3D structure that overcomes major limitations by combining two complementary approaches: template-based modeling that is capable of predicting global architectures based on similarity to other molecules but often fails to predict local unique features, and template-free modeling that can predict the local folding, but is limited to modeling the structure of relatively small molecules. Here, we combine the use of a template-based method ModeRNA with a template-free method SimRNA. ModeRNA requires a sequence alignment of the target RNA sequence to be modeled with a template of the known structure; it generates a model that predicts the structure of a conserved core and provides a starting point for modeling of variable regions. SimRNA can be used to fold small RNAs (models for larger RNAs that have a correctly modeled core. ModeRNA can be either downloaded, compiled and run locally or run through a web interface at http://genesilico.pl/modernaserver/ . SimRNA is currently available to download for local use as a precompiled software package at http://genesilico.pl/software/stand-alone/simrna and as a

  12. SimOS-Goodson: A Goodson-Processor Based Multi-Core Full-System Simulator%基于龙芯CPU的多核全系统模拟器SimOS-Goodson

    Institute of Scientific and Technical Information of China (English)

    高翔; 张福新; 汤彦; 章隆兵; 胡伟武; 唐志敏

    2007-01-01

    随着片上多核结构成为当前高性能微处理器发展的趋势,目标工作负载也变得多样化,传统的用户级模拟器已不能适应未来体系结构的研究需要.基于SimOS全系统模拟环境,设计并实现了龙芯CPU的片上多核全系统模拟器SimOS-Goodson.在SimOS-Goodson的设计中运用了时序与功能分离的组织形式,并采用了一种新的值预测校验算法来解决模拟环境中的存储一致性问题.经过与真实硬件环境进行交叉校正,保证了模拟器的可信度与准确度.与用户级模拟器相比,SimOS-Goodson保持了高速、灵活的优点,又具备精确、全系统和易使用的特征.通过对完整Linux操作系统的移植,可在SimOS-Goodson所模拟的全系统环境中进行各类微体系结构和应用负载的分析与评估.在3.0GHz的Pentium4微机上,SimOS-Goodson的指令模拟速度超过300K/秒.SimOS-Goodson将会在基于龙芯CPU的片上多核体系结构研究中发挥重要作用.

  13. Grafisk presentasjon av GPenSim-simulering

    OpenAIRE

    2009-01-01

    GPenSim er et verktøy for modellering og simulering av diskret hendelsesystemer (DES). GPenSim er integrert i Matlab-plattformen, og har dermed tilgang til innebygde Matlabfunksjoner som plot etc. I GPenSim blir Petri net-grafen definert i Petri netdefinisjonsfiler. Resultatet av en simulering blir vist i tekst. Oppgaven gikk ut på å utvikle et verktøy som skulle presentere både Petri net-grafen og simuleringsresultatet grafisk. En grafisk presentasjon viser tydeligere sammenhe...

  14. Analysis of GaN high electron mobility transistor switching characteristics for high-power applications with HiSIM-GaN compact model

    Science.gov (United States)

    Mizoguchi, Takeshi; Naka, Toshiyuki; Tanimoto, Yuta; Okada, Yasuhiro; Saito, Wataru; Miura-Mattausch, Mitiko; Jürgen Mattausch, Hans

    2016-04-01

    This paper presents a newly developed compact model HiSIM-GaN [Hiroshima University STARC IGFET Model for GaN high electron mobility transistors (HEMTs)]. The developed model includes two specific features of GaN-HEMT to reproduce the power efficiency accurately. One is the two-dimensional electron gas induced at the heterojunction, which is modeled by considering the potential distribution across the junction including the trap density contribution. The second feature is the field plate, which is introduced to delocalize the electric-field peak that occurs at the electrode edge. Using HiSIM-GaN, device characteristics have been simulated. It is demonstrated that measured DC/AC characteristics are well reproduced with the developed model. The model has also been applied to analyze circuit characteristics of a boost converter. It is shown that the waveform is well reproduced by considering one half of the trap density extracted with measured DC characteristics due to the time constant of trap events. Furthermore, it is verified that the power efficiency as a function of the load current is predicted within an accuracy of 1%. Influence of the trap density and the field plate on circuit performances is also discussed.

  15. cystiSim - an agent-based model for Taenia solium transmission and control

    DEFF Research Database (Denmark)

    Braae, Uffe Christian; Devleesschauwer, Brecht; Gabriël, Sarah

    Taenia solium taeniosis/cysticercosis was declared eradicable by the International Task Force for Disease Eradication in 1993, but remains a neglected zoonosis due to limited information about its transmission and validation of intervention tools. To address this gap, we developed cystiSim, an ag......Taenia solium taeniosis/cysticercosis was declared eradicable by the International Task Force for Disease Eradication in 1993, but remains a neglected zoonosis due to limited information about its transmission and validation of intervention tools. To address this gap, we developed cysti...

  16. Phase 1 Validation Testing and Simulation for the WEC-Sim Open Source Code

    Science.gov (United States)

    Ruehl, K.; Michelen, C.; Gunawan, B.; Bosma, B.; Simmons, A.; Lomonaco, P.

    2015-12-01

    WEC-Sim is an open source code to model wave energy converters performance in operational waves, developed by Sandia and NREL and funded by the US DOE. The code is a time-domain modeling tool developed in MATLAB/SIMULINK using the multibody dynamics solver SimMechanics, and solves the WEC's governing equations of motion using the Cummins time-domain impulse response formulation in 6 degrees of freedom. The WEC-Sim code has undergone verification through code-to-code comparisons; however validation of the code has been limited to publicly available experimental data sets. While these data sets provide preliminary code validation, the experimental tests were not explicitly designed for code validation, and as a result are limited in their ability to validate the full functionality of the WEC-Sim code. Therefore, dedicated physical model tests for WEC-Sim validation have been performed. This presentation provides an overview of the WEC-Sim validation experimental wave tank tests performed at the Oregon State University's Directional Wave Basin at Hinsdale Wave Research Laboratory. Phase 1 of experimental testing was focused on device characterization and completed in Fall 2015. Phase 2 is focused on WEC performance and scheduled for Winter 2015/2016. These experimental tests were designed explicitly to validate the performance of WEC-Sim code, and its new feature additions. Upon completion, the WEC-Sim validation data set will be made publicly available to the wave energy community. For the physical model test, a controllable model of a floating wave energy converter has been designed and constructed. The instrumentation includes state-of-the-art devices to measure pressure fields, motions in 6 DOF, multi-axial load cells, torque transducers, position transducers, and encoders. The model also incorporates a fully programmable Power-Take-Off system which can be used to generate or absorb wave energy. Numerical simulations of the experiments using WEC-Sim will be

  17. Ag nanoparticles: size- and surface-dependent effects on model aquatic organisms and uptake evaluation with NanoSIMS.

    Science.gov (United States)

    Georgantzopoulou, Anastasia; Balachandran, Yekkuni L; Rosenkranz, Philipp; Dusinska, Maria; Lankoff, Anna; Wojewodzka, Maria; Kruszewski, Marcin; Guignard, Cédric; Audinot, Jean-Nicolas; Girija, Shanmugam; Hoffmann, Lucien; Gutleb, Arno C

    2013-11-01

    This study aims to assess the effects of Ag particles synthesised by a chemical (Ag 20, 200 nm) and biological method (Ag 23, 27 nm) in aquatic organisms: the bacterium Vibrio fischeri, the alga Desmodesmus subspicatus and the crustacean Daphnia magna. Ag particles exerted toxic effects in all organisms studied with Ag particles 23 nm being the most potent. Although soluble Ag was released in all media, the differences between the tested Ag particles still cannot be explained solely based on soluble Ag. NanoSIMS analysis performed with D. magna showed that apart from their localisation in the gut lumen, Ag 200 nm and Ag NPs 23 nm seemed to pass through the epithelial barrier as well. Ag NPs 23 nm localised in specific areas seemed to be within the ovaries. This study strengthens the argument that size, method of synthesis as well as surface chemistry may affect the uptake and toxic effects of Ag NPs.

  18. A platform for dynamic simulation and control of movement based on OpenSim and MATLAB.

    Science.gov (United States)

    Mansouri, Misagh; Reinbolt, Jeffrey A

    2012-05-11

    Numerical simulations play an important role in solving complex engineering problems and have the potential to revolutionize medical decision making and treatment strategies. In this paper, we combine the rapid model-based design, control systems and powerful numerical method strengths of MATLAB/Simulink with the simulation and human movement dynamics strengths of OpenSim by developing a new interface between the two software tools. OpenSim is integrated with Simulink using the MATLAB S-function mechanism, and the interface is demonstrated using both open-loop and closed-loop control systems. While the open-loop system uses MATLAB/Simulink to separately reproduce the OpenSim Forward Dynamics Tool, the closed-loop system adds the unique feature of feedback control to OpenSim, which is necessary for most human movement simulations. An arm model example was successfully used in both open-loop and closed-loop cases. For the open-loop case, the simulation reproduced results from the OpenSim Forward Dynamics Tool with root mean square (RMS) differences of 0.03° for the shoulder elevation angle and 0.06° for the elbow flexion angle. MATLAB's variable step-size integrator reduced the time required to generate the forward dynamic simulation from 7.1s (OpenSim) to 2.9s (MATLAB). For the closed-loop case, a proportional-integral-derivative controller was used to successfully balance a pole on model's hand despite random force disturbances on the pole. The new interface presented here not only integrates the OpenSim and MATLAB/Simulink software tools, but also will allow neuroscientists, physiologists, biomechanists, and physical therapists to adapt and generate new solutions as treatments for musculoskeletal conditions. Copyright © 2012 Elsevier Ltd. All rights reserved.

  19. Social Impacts Module (SIM) Transition

    Science.gov (United States)

    2012-09-28

    the agent constructor in the Java source code. Agents are SimEntities, as defined by the SimKit Java Libraries. An agent perceives events and seeks...technical overview of these key SIM components. For an in depth understanding of SIM components, refer to the JavaDocs and Dr. Buss’s Manual on...volume of data generated5, a combination of manual and batch-file processing methods were used to organize the outputs into similar dataset

  20. SIMS analyses of Mg, Cr, and Ni isotopes in primitive meteorites and short-lived radionuclides in the early solar system

    Energy Technology Data Exchange (ETDEWEB)

    Guan, Y.; Huss, G.R.; Leshin, L.A

    2004-06-15

    SIMS analyses of {sup 26}Al-{sup 26}Mg, {sup 60}Fe-{sup 60}Ni, and {sup 53}Mn-{sup 53}Cr systems in unequilibrated enstatite chondrites provide evidence for the former existence of {sup 26}Al, {sup 60}Fe, and {sup 53}Mn in this highly reduced meteorite group, suggesting the widespread of these short-lived radionuclides in the early solar system. Calcium-aluminum-rich inclusions and Al-rich chondrules in enstatite chondrites show {sup 26}Al-{sup 26}Mg characteristics similar to their counterparts in other types of chondrites. Assuming its homogenous distribution, fine-scale {sup 26}Al relative chronology can be obtained for different components in meteorites. Well-defined isochrons yield initial {sup 60}Fe/{sup 56}Fe ratios of (0.3-1)x10{sup -6} in sulfides from enstatite chondrites. The former presence of {sup 60}Fe suggests a stellar source and its possible high abundance points to a supernova origin. {sup 26}Al and {sup 60}Fe could be important heat sources for the early planetary processes. The large variations of initial {sup 60}Fe/{sup 56}Fe and {sup 53}Mn/{sup 55}Mn ratios and the discordance between {sup 60}Fe-{sup 60}Ni and {sup 53}Mn-{sup 53}Cr systems observed in sulfides indicate later disturbance of the two isotopic systems, and therefore, bear no strict chronological significance. SIMS isotopic analysis can be utilized to attain important information about the early evolution of the solar system.

  1. Improvements in SIMS continue

    Energy Technology Data Exchange (ETDEWEB)

    Winograd, Nicholas [Department of Chemistry, Penn State University, University Park, PA 16802 (United States)]. E-mail: nxw@psu.edu; Postawa, Zbigniew [Smoluchowski Institute of Physics, Jagiellonian University, Cracow (Poland); Cheng, Juan [Department of Chemistry, Penn State University, University Park, PA 16802 (United States); Szakal, Christopher [Department of Chemistry, Penn State University, University Park, PA 16802 (United States); Kozole, Joseph [Department of Chemistry, Penn State University, University Park, PA 16802 (United States); Garrison, Barbara J. [Department of Chemistry, Penn State University, University Park, PA 16802 (United States)

    2006-07-30

    Cluster ion bombardment is at the forefront of current ToF-SIMS research, particularly when examining the feasibility of molecular depth profiling and three-dimensional imaging applications. It has become increasingly clear that secondary ion emission after cluster projectile impact results from a radically different sputtering mechanism than the linear collision cascades that dominate after atomic ion bombardment. The new physics involved with cluster ion impacts dramatically change the traditional approaches toward sample analysis with the SIMS technique. Several new ion bombardment properties have emerged from experimental and theoretical work involving cluster ions such as Au{sub 3} {sup +}, Bi{sub 3} {sup +}, SF{sub 5} {sup +}, and C{sub 60} {sup +}-all of which are commercially available ion sources. These new properties lead to new rules for traditional static SIMS experiments, provoking new methodologies, and introducing new applications-especially where high mass sensitivity and high-resolution imaging of organic and biological materials are necessary. This paper aims to elucidate recent experimental and theoretical work on these new cluster ion properties and offers insights into how these special properties can be used for future experiments and applications.

  2. SIM-Lite Mission Spectral Calibration Sensitivities and Refinements

    Science.gov (United States)

    Zhai, C.; An, X.; Goullioud, R.; Nemati, B.; Shao, M.; Shen, J.; Wehmeier, U.; Wang, X.; Weiler, M.; Werne, T.; Wu, J.

    2010-01-01

    SIM-Lite missions will perform astrometry at microarcsecond accuracy using star light interferometry. For typical baselines that are shorter than 10 meters, this requires to measure optical path difference (OPD) accurate to tens of picometers calling for highly accurate calibration. A major challenge is to calibrate the star spectral dependency in fringe measurements -- the spectral calibration. Previously, we have developed a spectral calibration and estimation scheme achieving picometer level accuracy. In this paper, we present the improvements regarding the application of this scheme from sensitivity studies. Data from the SIM Spectral Calibration Development Unit (SCDU) test facility shows that the fringe OPD is very sensitive to pointings of both beams from the two arms of the interferometer. This sensitivity coupled with a systematic pointing error provides a mechanism to explain the bias changes in 2007. Improving system alignment can effectively reduce this sensitivity and thus errors due to pointing errors. Modeling this sensitivity can lead to further improvement in data processing. We then investigate the sensitivity to a model parameter, the bandwidth used in the fringe model, which presents an interesting trade between systematic and random errors. Finally we show the mitigation of calibration errors due to system drifts by interpolating instrument calibrations. These improvements enable us to use SCDU data to demonstrate that SIM-Lite missions can meet the 1pm noise floor requirement for detecting earth-like exoplanets.

  3. Tank System Integrated Model: A Cryogenic Tank Performance Prediction Program

    Science.gov (United States)

    Bolshinskiy, L. G.; Hedayat, A.; Hastings, L. J.; Sutherlin, S. G.; Schnell, A. R.; Moder, J. P.

    2017-01-01

    Accurate predictions of the thermodynamic state of the cryogenic propellants, pressurization rate, and performance of pressure control techniques in cryogenic tanks are required for development of cryogenic fluid long-duration storage technology and planning for future space exploration missions. This Technical Memorandum (TM) presents the analytical tool, Tank System Integrated Model (TankSIM), which can be used for modeling pressure control and predicting the behavior of cryogenic propellant for long-term storage for future space missions. Utilizing TankSIM, the following processes can be modeled: tank self-pressurization, boiloff, ullage venting, mixing, and condensation on the tank wall. This TM also includes comparisons of TankSIM program predictions with the test data andexamples of multiphase mission calculations.

  4. Use of CAPE-OPEN standards in the interoperability between modelling tools (MoT) and process simulators (ProSim)

    DEFF Research Database (Denmark)

    Morales Rodriguez, Ricardo; Gani, Rafiqul; Déchelotte, Stéphane

    2008-01-01

    the use of a standard middleware (DLL file). In case study 2, the interoperability between ProSimPlus simulator (PME) and ICAS-MoT (PMC) is highlighted for simulation of a new unit operation and combined with other unit operations that can be found in the host simulator. A ProSim...

  5. PowderSim: Lagrangian Discrete and Mesh-Free Continuum Simulation Code for Cohesive Soils

    Science.gov (United States)

    Johnson, Scott; Walton, Otis; Settgast, Randolph

    2013-01-01

    PowderSim is a calculation tool that combines a discrete-element method (DEM) module, including calibrated interparticle-interaction relationships, with a mesh-free, continuum, SPH (smoothed-particle hydrodynamics) based module that utilizes enhanced, calibrated, constitutive models capable of mimicking both large deformations and the flow behavior of regolith simulants and lunar regolith under conditions anticipated during in situ resource utilization (ISRU) operations. The major innovation introduced in PowderSim is to use a mesh-free method (SPH-based) with a calibrated and slightly modified critical-state soil mechanics constitutive model to extend the ability of the simulation tool to also address full-scale engineering systems in the continuum sense. The PowderSim software maintains the ability to address particle-scale problems, like size segregation, in selected regions with a traditional DEM module, which has improved contact physics and electrostatic interaction models.

  6. Description of Chiral Doublets in $A\\sim130$ Nuclei and the Possible Chiral Doublets in $A\\sim100$ Nuclei

    CERN Document Server

    Peng, J; Zhang, S Q

    2003-01-01

    The chiral doublets for nuclei in $A\\sim100$ and $A\\sim130$ regions have been studied with the particle-rotor model. The experimental spectra of chiral partners bands for four N=75 isotones in $A\\sim130$ region have been well reproduced by the calculation with the configuration $\\pi h_{11/2}\\otimes\

  7. SIM2 NERO

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    近期,SIM2推出了最新的NERO系列3D投影机,外壳涂层采用柔软的黑色塑料,造型典雅美观。NERO系列包括NERO 1、NERO 2、NERO HB和NERO 235四款型号。NERO 1是该系列产品的入门级型号,亮度为2000流明,具有PureMovie和PureMotion技术,支持HDMI 1.4版本;NERO 2在NERO 1基础上增加了sim2动态黑技术(加强方案)、极致色彩技术以及电动虹膜控制,对比度达30000:1;NERO HB具有更高的亮度,达3000流明;NERO 235具有新的WQXGA DMD芯片,分辨率为2560×1600像素,这样就可以在没有丢失像素、亮度及无需增加变形镜头的情况下,投射出2.35:1模式的影片。

  8. Design and development of a unified subscribers' SIM registration ...

    African Journals Online (AJOL)

    Journal Home > Vol 13, No 2 (2016) > ... The new system surpasses the existing one as it is able to register all SIM cards of the four (4) major ... It is recommended that SIM card availability/sales on the road side should be stopped or such SIM ...

  9. MI-Sim: A MATLAB package for the numerical analysis of microbial ecological interactions.

    Science.gov (United States)

    Wade, Matthew J; Oakley, Jordan; Harbisher, Sophie; Parker, Nicholas G; Dolfing, Jan

    2017-01-01

    Food-webs and other classes of ecological network motifs, are a means of describing feeding relationships between consumers and producers in an ecosystem. They have application across scales where they differ only in the underlying characteristics of the organisms and substrates describing the system. Mathematical modelling, using mechanistic approaches to describe the dynamic behaviour and properties of the system through sets of ordinary differential equations, has been used extensively in ecology. Models allow simulation of the dynamics of the various motifs and their numerical analysis provides a greater understanding of the interplay between the system components and their intrinsic properties. We have developed the MI-Sim software for use with MATLAB to allow a rigorous and rapid numerical analysis of several common ecological motifs. MI-Sim contains a series of the most commonly used motifs such as cooperation, competition and predation. It does not require detailed knowledge of mathematical analytical techniques and is offered as a single graphical user interface containing all input and output options. The tools available in the current version of MI-Sim include model simulation, steady-state existence and stability analysis, and basin of attraction analysis. The software includes seven ecological interaction motifs and seven growth function models. Unlike other system analysis tools, MI-Sim is designed as a simple and user-friendly tool specific to ecological population type models, allowing for rapid assessment of their dynamical and behavioural properties.

  10. The SimSpay-Student Perceptions of a Low-Cost Build-It-Yourself Model for Novice Training of Surgical Skills in Canine Ovariohysterectomy

    DEFF Research Database (Denmark)

    Langebæk, Rikke; Toft, Nils; Eriksen, Thomas

    2015-01-01

    staff or costly, hard-to-source supplies. The SimSpay was developed and implemented in the clinical veterinary curriculum in 2013. In 2014, 54 students participated in a questionnaire study to investigate their perception of the usefulness of the SimSpay as a learning tool. On a five-point Likert......-type scale, students were asked to rate their perceived levels of competence, confidence, and anatomic knowledge before and after SimSpay training. Results demonstrate a strongly significant (p

  11. Modelling and Research of Chaotic Rossler System with LabView and Multisim Software Environment

    Directory of Open Access Journals (Sweden)

    V. B. Rusyn

    2014-12-01

    Full Text Available Introduction. In this paper is presented a theoretical basis of chaotic Rossler system. Modelling of Chaotic Rossler System in LabView. Submitted programming interface that has been developed in LabView software environment. It allows generating and researching chaotic Rossler system. Submitted by time distribution of three chaotic coordinates and spectral analysis. Also submitted values of variables in which generated different period (controlled attractors of the chaotic Rossler system. The software interface demonstrates masking and decrypt information carrier of the chaotic Rossler system. Modelling of Chaotic Rossler System in MultiSim. Using MultiSim software environment conducted scheme technical analysis circuit of a generator that implements a chaotic Rossler system. Conclusions. Modelled circuit of generator confirming correspondence scheme-technical solution to mathematical apparatus that describing chaotic Rossler system. Keywords: chaos; control; system; Rossler; LabView; MultiSim

  12. Estimation of lumbar spinal loading and trunk muscle forces during asymmetric lifting tasks: application of whole-body musculoskeletal modelling in OpenSim.

    Science.gov (United States)

    Kim, Hyun-Kyung; Zhang, Yanxin

    2016-06-03

    Large spinal compressive force combined with axial torsional shear force during asymmetric lifting tasks is highly associated with lower back injury (LBI). The aim of this study was to estimate lumbar spinal loading and muscle forces during symmetric lifting (SL) and asymmetric lifting (AL) tasks using a whole-body musculoskeletal modelling approach. Thirteen healthy males lifted loads of 7 and 12 kg under two lifting conditions (SL and AL). Kinematic data and ground reaction force data were collected and then processed by a whole-body musculoskeletal model. The results show AL produced a significantly higher peak lateral shear force as well as greater peak force of psoas major, quadratus lumborum, multifidus, iliocostalis lumborum pars lumborum, longissimus thoracis pars lumborum and external oblique than SL. The greater lateral shear forces combined with higher muscle force and asymmetrical muscle contractions may have the biomechanical mechanism responsible for the increased risk of LBI during AL. Practitioner Summary: Estimating lumbar spinal loading and muscle forces during free-dynamic asymmetric lifting tasks with a whole-body musculoskeletal modelling in OpenSim is the core value of this research. The results show that certain muscle groups are fundamentally responsible for asymmetric movement, thereby producing high lumbar spinal loading and muscle forces, which may increase risks of LBI during asymmetric lifting tasks.

  13. The Next Generation Virgo Cluster Survey (NGVS). XXIV. The Red Sequence to $\\sim$10$^6$ L$_{\\odot}$ and Comparisons with Galaxy Formation Models

    CERN Document Server

    Roediger, Joel C; Côté, Patrick; MacArthur, Lauren A; Sánchez-Janssen, Rúben; Blakeslee, John P; Peng, Eric W; Liu, Chengze; Munoz, Roberto; Cuillandre, Jean-Charles; Gwyn, Stephen; Mei, Simona; Boissier, Samuel; Boselli, Alessandro; Cantiello, Michele; Courteau, Stéphane; Duc, Pierre-Alain; Lançon, Ariane; Mihos, J Christopher; Puzia, Thomas H; Taylor, James E; Durrell, Patrick R; Toloba, Elisa; Guhathakurta, Puragra; Zhang, Hongxin

    2016-01-01

    We use deep optical photometry from the Next Generation Virgo Cluster Survey [NGVS] to investigate the color-magnitude diagram for the galaxies inhabiting the core of this cluster. The sensitivity of the NGVS imaging allows us to continuously probe galaxy colors over a factor of $\\sim 2 \\times 10^5$ in luminosity, from brightest cluster galaxies to scales overlapping classical satellites of the Milky Way [$M_{g^{\\prime}}$ $\\sim$ $-$9; $M_{*}$ $\\sim 10^6$ M$_{\\odot}$], within a single environment. Remarkably, we find the first evidence that the RS flattens in all colors at the faint-magnitude end [starting between $-$14 $\\le$ $M_{g^{\\prime}}$ $\\le$ $-$13, around $M_{*}$ $\\sim 4 \\times 10^7$ M$_{\\odot}$], with the slope decreasing to $\\sim$60% or less of its value at brighter magnitudes. This could indicate that the stellar populations of faint dwarfs in Virgo's core share similar characteristics [e.g. constant mean age] over $\\sim$3 mags in luminosity, suggesting that these galaxies were quenched coevally, lik...

  14. A simplified interventional mapping system (SIMS) for the selection of combinations of targeted treatments in non-small cell lung cancer

    Science.gov (United States)

    Lazar, Vladimir; Martini, Jean-François; Gomez-Navarro, Jesus; Yver, Antoine; Kan, Zhengyin; Dry, Jonathan R.; Kehren, Jeanne; Validire, Pierre; Rodon, Jordi; Vielh, Philippe; Ducreux, Michel; Galbraith, Susan; Lehnert, Manfred; Onn, Amir; Berger, Raanan; Pierotti, Marco A.; Porgador, Angel; Pramesh, CS; Ye, Ding-wei; Carvalho, Andre L.; Batist, Gerald; Le Chevalier, Thierry; Morice, Philippe; Besse, Benjamin; Vassal, Gilles; Mortlock, Andrew; Hansson, Johan; Berindan-Neagoe, Ioana; Dann, Robert; Haspel, Joel; Irimie, Alexandru; Laderman, Steve; Nechushtan, Hovav; Al Omari, Amal S.; Haywood, Trent; Bresson, Catherine; Soo, Khee Chee; Osman, Iman; Mata, Hilario; Lee, Jack J.; Jhaveri, Komal; Meurice, Guillaume; Palmer, Gary; Lacroix, Ludovic; Koscielny, Serge; Eterovic, Karina Agda; Blay, Jean-Yves; Buller, Richard; Eggermont, Alexander; Schilsky, Richard L.; Mendelsohn, John; Soria, Jean-Charles; Rothenberg, Mace

    2015-01-01

    Non-small cell lung cancer (NSCLC) is a leading cause of death worldwide. Targeted monotherapies produce high regression rates, albeit for limited patient subgroups, who inevitably succumb. We present a novel strategy for identifying customized combinations of triplets of targeted agents, utilizing a simplified interventional mapping system (SIMS) that merges knowledge about existent drugs and their impact on the hallmarks of cancer. Based on interrogation of matched lung tumor and normal tissue using targeted genomic sequencing, copy number variation, transcriptomics, and miRNA expression, the activation status of 24 interventional nodes was elucidated. An algorithm was developed to create a scoring system that enables ranking of the activated interventional nodes for each patient. Based on the trends of co-activation at interventional points, combinations of drug triplets were defined in order to overcome resistance. This methodology will inform a prospective trial to be conducted by the WIN consortium, aiming to significantly impact survival in metastatic NSCLC and other malignancies. PMID:25944621

  15. Port-O-Sim Object Simulation Application

    Science.gov (United States)

    Lanzi, Raymond J.

    2009-01-01

    Port-O-Sim is a software application that supports engineering modeling and simulation of launch-range systems and subsystems, as well as the vehicles that operate on them. It is flexible, distributed, object-oriented, and realtime. A scripting language is used to configure an array of simulation objects and link them together. The script is contained in a text file, but executed and controlled using a graphical user interface. A set of modules is defined, each with input variables, output variables, and settings. These engineering models can be either linked to each other or run as standalone. The settings can be modified during execution. Since 2001, this application has been used for pre-mission failure mode training for many Range Safety Scenarios. It contains range asset link analysis, develops look-angle data, supports sky-screen site selection, drives GPS (Global Positioning System) and IMU (Inertial Measurement Unit) simulators, and can support conceptual design efforts for multiple flight programs with its capacity for rapid six-degrees-of-freedom model development. Due to the assembly of various object types into one application, the application is applicable across a wide variety of launch range problem domains.

  16. Stress-In-Motion (SIM) system for capturing tri-axial tyre-road interaction in the contact patch

    CSIR Research Space (South Africa)

    De Beer, Morris

    2013-08-01

    Full Text Available A unique measuring system for the quantification of tri-axial (3-D) tyre contact force (or stress) distributions was designed, developed and used in several studies since 1994. The uniqueness of the system is defined by a textured measuring surface...

  17. The Design and Implementation of Eco-Evolutionary PVA Models: An Integrative Approach Using HexSim

    Science.gov (United States)

    To persist into the future, species of conservation concern must remain both demographically and genetically viable. Developing mitigation and recovery strategies to ensure species’ viability necessitates the use of forecasting models that can incorporate ecological and/or...

  18. An Interactive Teaching System for Bond Graph Modeling and Simulation in Bioengineering

    Science.gov (United States)

    Roman, Monica; Popescu, Dorin; Selisteanu, Dan

    2013-01-01

    The objective of the present work was to implement a teaching system useful in modeling and simulation of biotechnological processes. The interactive system is based on applications developed using 20-sim modeling and simulation software environment. A procedure for the simulation of bioprocesses modeled by bond graphs is proposed and simulators…

  19. How can BIM support Construction Safety Management? Development of SIM

    Directory of Open Access Journals (Sweden)

    Chan Isabelle Y S

    2016-01-01

    Full Text Available BIM is continuously changing the way construction can be approached, from design, scheduling, costing to facilities management. However, even though construction safety is a worldwide issue, and though previous, yet limited, studies have proven its great potential, BIM has not been extended to include automated construction safety management functions, i.e., hazard identification, assessment and control for construction works. In fact, as many as 71% of safety incidents can be prevented by safety considerations at design stage. Automation via BIM is the key to enhance effectiveness and efficiency of safety management, but development of Safety Information Modelling (SIM is the key pre-requisite. This paper aims to outline a research project for developing both information and technical requirements for SIM via questionnaire survey, focus group, and real case studies. The project results, to be validated by real projects, will act as solid platform for developing:- i Practical guidance to construction and safety professionals on the types of safety management a SIM can conduct, and the ways of utilizing the safety information in a SIM model [based on the systematic SIM information requirements (e.g., object identification, geometry attributes, safety rules]; and ii Overall guidance to software developers to develop appropriate SIM tools for different scenarios [based on the systematic SIM technical requirements (e.g., model information exchange, visualization, conflict analysis process for risk assessment, reliability].

  20. Generating a 3D Simulation of a Car Accident from a Formal Description : the CarSim System

    NARCIS (Netherlands)

    Egges, A.; Nijholt, A.; Nugues, P.

    2001-01-01

    The problem of generating a 3D simulation of a car accident from a written description can be divided into two subtasks: the linguistic analysis and the virtual scene generation. As a means of communication between these two system parts, we designed a template formalism to represent a written

  1. SimDelta”: Inquiry into an internet-based interactive model for water infrastructure development in The Netherlands

    NARCIS (Netherlands)

    Rijcken, T.; Stijnen, J.; Slootjes, N.

    2012-01-01

    The Dutch Delta Program is currently developing new government policies for flood protection and fresh water supply. Decision support instruments have to address the program’s technical and political complexity. The water system functions are highly interwoven and would benefit from an integrated ap

  2. Measuring the biomechanical properties of the actin in MCF-7 breast cancer cell with a combined system of AFM and SIM

    Science.gov (United States)

    You, Minghai; Chen, Jianling; Wang, Yuhua; Jiang, Ningcheng; Xie, Shusen; Yang, Hongqin

    2016-10-01

    Biomechanics of cell plays an important role in the behavior and development of diseases, which has a profound influence on the health, structural integrity, and function of cells. In this study, we proposed a method to assess the biomechanical properties in single breast cancer cell line MCF-7 by combining structured illumination microscopy (SIM) with atomic force microscopy (AFM). High resolution optical image of actin in MCF-7 cell and its elastography were obtained. The result shows that the quantitative resolution was improved by SIM, with 490 nm of conventional fluorescence image and 285 nm of reconstructed SIM image, which could give a precise location for AFM measurement. The elasticity of actin is about in the range of 10 1000 kPa. The proposed methods will be helpful in the understanding and clinical diagnosis of diseases at single cell level.

  3. Electronique appliquée, électromécanique sous Simscape & SimPowerSystems (Matlab/Simulink)

    CERN Document Server

    Mokhtari, Mohand

    2012-01-01

    Cet ouvrage permet d'apprendre à utiliser les Outils Simscape et SimpowerSystems pour modéliser et simuler des circuits électroniques, électromécaniques et électronique de puissance. Pour utiliser ces deux outils, la connaissance de MATLAB et SIMULINK est indispensable. Cet ouvrage possède trois types de chapitres: prise en main de l'outil, description des différentes bibliothèques avec quelques applications et enfin chapitre d'applications très utilisées dans les domaines universitaires et industriels.

  4. Taking the Measure of the Universe : Precision Astrometry with SIM PlanetQuest

    Science.gov (United States)

    Unwin, Stephen C.; Shao, Michael; Tanner, Angelle M.; Allen, Ronald J.; Beichman, Charles A.; Boboltz, David; Catanzarite, Joseph H.; Chaboyer, Brian C.; Ciardi, David R.; Edberg, Stephen J.; Fey, Alan L.; Fischer, Debra A.; Gelino, Christopher R.; Gould, Andrew P.; Grillmair, Carl; Henry, Todd J.; Johnston, Kathryn V.; Johnston, Kenneth J.; Jones, Dayton L.; Kulkarni, Shrinivas R.; Law, Nicholas M.; Majewski, Steven R.; Makarov, Valeri V.; Marcy, Geoffrey W.; Meier, David L.

    2008-01-01

    Precision astrometry at microarcsecond accuracy has application to a wide range of astrophysical problems. This paper is a study of the science questions that can be addressed using an instrument with flexible scheduling that delivers parallaxes at about 4 microarcsec (microns)as) on targets as faint as V = 20, and differential accuracy of 0.6 (microns)as on bright targets. The science topics are drawn primarily from the Team Key Projects, selected in 2000, for the Space Interferometry Mission PlanetQuest (SIM PlanetQuest). We use the capabilities of this mission to illustrate the importance of the next level of astrometric precision in modern astrophysics. SIM PlanetQuest is currently in the detailed design phase, having completed in 2005 all of the enabling technologies needed for the flight instrument. It will be the first space-based long baseline Michelson interferometer designed for precision astrometry. SIM will contribute strongly to many astronomical fields including stellar and galactic astrophysics, planetary systems around nearby stars, and the study of quasar and AGN nuclei. Using differential astrometry SIM will search for planets with masses as small as an Earth orbiting in the 'habitable zone' around the nearest stars, and could discover many dozen if Earth-like planets are common. It will characterize the multiple-planet systems that are now known to exist, and it will be able to search for terrestrial planets around all of the candidate target stars in the Terrestrial Planet Finder and Darwin mission lists. It will be capable of detecting planets around young stars, thereby providing insights into how planetary systems are born and how they evolve with time. Precision astrometry allows the measurement of accurate dynamical masses for stars in binary systems. SIM will observe significant numbers of very high- and low-mass stars, providing stellar masses to 1%, the accuracy needed to challenge physical models. Using precision proper motion

  5. Regional climate assessment of precipitation and temperature in Southern Punjab (Pakistan) using SimCLIM climate model for different temporal scales

    Science.gov (United States)

    Amin, Asad; Nasim, Wajid; Mubeen, Muhammad; Sarwar, Saleem; Urich, Peter; Ahmad, Ashfaq; Wajid, Aftab; Khaliq, Tasneem; Rasul, Fahd; Hammad, Hafiz Mohkum; Rehmani, Muhammad Ishaq Asif; Mubarak, Hussani; Mirza, Nosheen; Wahid, Abdul; Ahamd, Shakeel; Fahad, Shah; Ullah, Abid; Khan, Mohammad Nauman; Ameen, Asif; Amanullah; Shahzad, Babar; Saud, Shah; Alharby, Hesham; Ata-Ul-Karim, Syed Tahir; Adnan, Muhammad; Islam, Faisal; Ali, Qazi Shoaib

    2016-10-01

    Unbalanced climate during the last decades has created spatially alarming and destructive situations in the world. Anomalies in temperature and precipitation enhance the risks for crop production in large agricultural region (especially the Southern Punjab) of Pakistan. Detailed analysis of historic weather data (1980-2011) record helped in creating baseline data to compare with model projection (SimCLIM) for regional level. Ensemble of 40 GCMs used for climatic projections with greenhouse gas (GHG) representative concentration pathways (RCP-4.5, 6.0, 8.5) was selected on the baseline comparison and used for 2025 and 2050 climate projection. Precipitation projected by ensemble and regional weather observatory at baseline showed highly unpredictable nature while both temperature extremes showed 95 % confidence level on a monthly projection. Percentage change in precipitation projected by model with RCP-4.5, RCP-6.0, and RCP-8.5 showed uncertainty 3.3 to 5.6 %, 2.9 to 5.2 %, and 3.6 to 7.9 % for 2025 and 2050, respectively. Percentage change of minimum temperature from base temperature showed that 5.1, 4.7, and 5.8 % for 2025 and 9.0, 8.1, and 12.0 % increase for projection year 2050 with RCP-4.5, 6.0, and 8.5 and maximum temperature 2.7, 2.5, and 3.0 % for 2025 and 4.7, 4.4, and 6.4 % for 2050 will be increased with RCP-4.5, 6.0, and 8.5, respectively. Uneven increase in precipitation and asymmetric increase in temperature extremes in future would also increase the risk associated with management of climatic uncertainties. Future climate projection will enable us for better risk management decisions.

  6. SIMS: a hybrid method for rapid conformational analysis.

    Directory of Open Access Journals (Sweden)

    Bryant Gipson

    Full Text Available Proteins are at the root of many biological functions, often performing complex tasks as the result of large changes in their structure. Describing the exact details of these conformational changes, however, remains a central challenge for computational biology due the enormous computational requirements of the problem. This has engendered the development of a rich variety of useful methods designed to answer specific questions at different levels of spatial, temporal, and energetic resolution. These methods fall largely into two classes: physically accurate, but computationally demanding methods and fast, approximate methods. We introduce here a new hybrid modeling tool, the Structured Intuitive Move Selector (sims, designed to bridge the divide between these two classes, while allowing the benefits of both to be seamlessly integrated into a single framework. This is achieved by applying a modern motion planning algorithm, borrowed from the field of robotics, in tandem with a well-established protein modeling library. sims can combine precise energy calculations with approximate or specialized conformational sampling routines to produce rapid, yet accurate, analysis of the large-scale conformational variability of protein systems. Several key advancements are shown, including the abstract use of generically defined moves (conformational sampling methods and an expansive probabilistic conformational exploration. We present three example problems that sims is applied to and demonstrate a rapid solution for each. These include the automatic determination of "active" residues for the hinge-based system Cyanovirin-N, exploring conformational changes involving long-range coordinated motion between non-sequential residues in Ribose-Binding Protein, and the rapid discovery of a transient conformational state of Maltose-Binding Protein, previously only determined by Molecular Dynamics. For all cases we provide energetic validations using well

  7. SIM PlanetQuest: Science with the Space Interferometry Mission

    Science.gov (United States)

    Unwin, Stephen (Editor); Turyshev, Slava (Editor)

    2004-01-01

    SIM - the Space Interferometry Mission - will perform precision optical astrometry on objects as faint as R magnitude 20. It will be the first space-based astrometric interferometer, operating in the optical band with a 10-m baseline. The Project is managed by the Jet Propulsion Laboratory, California Institute of Technology, in close collaboration with two industry partners, Lockheed Martin Missiles and Space, and TRW Inc., Space and Electronics Group. Launch of SIM is currently planned for 2009. In its wide-angle astrometric mode, SIM will yield 4 microarcsecond absolute position and parallax measurements. Astrometric planet searches will be done in a narrow-angle mode, with an accuracy of 4 microarcseconds or better in a single measurement. As a pointed rather than a survey instrument, SIM will maintain.its astrometric accuracy down to the faintest, magnitudes, opening up the opportunity for astrometry of active galactic nuclei to better than 10 pas. SIM will define a new astrometric reference frame, using a grid of approximately 1500 stars with positions accurate to 4 microarcseconds. The SIM Science Team comprises the Principal Investigators of ten Key Projects, and five Mission Scientists contributing their expertise to specific areas of the mission. Their science programs cover a wide range of topics in Galactic and extragalactic astronomy. They include: searches for low-mass planets - including analogs to our own solar system - tlie formation and dynamics of our Galaxy, calibration of the cosmic distance scale, and fundamental stellar astrophysics. All of the science observing on SIM is competitively awarded; the Science Team programs total about 40% of the total available, and the remainder will be assigned via future NASA competitions. This report is a compilation of science summaries by members of the Science Team, and it illustrates the wealth of scientific problems that microarcsecond-precision astrometry can contribute to. More information on SIM

  8. The Brazil SimSmoke policy simulation model: the effect of strong tobacco control policies on smoking prevalence and smoking-attributable deaths in a middle income nation.

    Directory of Open Access Journals (Sweden)

    David Levy

    Full Text Available BACKGROUND: Brazil has reduced its smoking rate by about 50% in the last 20 y. During that time period, strong tobacco control policies were implemented. This paper estimates the effect of these stricter policies on smoking prevalence and associated premature mortality, and the effect that additional policies may have. METHODS AND FINDINGS: The model was developed using the SimSmoke tobacco control policy model. Using policy, population, and smoking data for Brazil, the model assesses the effect on premature deaths of cigarette taxes, smoke-free air laws, mass media campaigns, marketing restrictions, packaging requirements, cessation treatment programs, and youth access restrictions. We estimate the effect of past policies relative to a counterfactual of policies kept to 1989 levels, and the effect of stricter future policies. Male and female smoking prevalence in Brazil have fallen by about half since 1989, which represents a 46% (lower and upper bounds: 28%-66% relative reduction compared to the 2010 prevalence under the counterfactual scenario of policies held to 1989 levels. Almost half of that 46% reduction is explained by price increases, 14% by smoke-free air laws, 14% by marketing restrictions, 8% by health warnings, 6% by mass media campaigns, and 10% by cessation treatment programs. As a result of the past policies, a total of almost 420,000 (260,000-715,000 deaths had been averted by 2010, increasing to almost 7 million (4.5 million-10.3 million deaths projected by 2050. Comparing future implementation of a set of stricter policies to a scenario with 2010 policies held constant, smoking prevalence by 2050 could be reduced by another 39% (29%-54%, and 1.3 million (0.9 million-2.0 million out of 9 million future premature deaths could be averted. CONCLUSIONS: Brazil provides one of the outstanding public health success stories in reducing deaths due to smoking, and serves as a model for other low and middle income nations. However, a

  9. Simulation of multi-photon emission isotopes using time-resolved SimSET multiple photon history generator

    Energy Technology Data Exchange (ETDEWEB)

    Chiang, Chih-Chieh; Lin, Hsin-Hon; Lin, Chang-Shiun; Chuang, Keh-Shih [Department of Biomedical Engineering and Environmental Sciences, National Tsing-HuaUniversity, Hsinchu, Taiwan (China); Jan, Meei-Ling [Health Physics Division, Institute of Nuclear Energy Research, Atomic Energy Council, Taoyuan, Taiwan (China)

    2015-07-01

    Abstract-Multiple-photon emitters, such as In-111 or Se-75, have enormous potential in the field of nuclear medicine imaging. For example, Se-75 can be used to investigate the bile acid malabsorption and measure the bile acid pool loss. The simulation system for emission tomography (SimSET) is a well-known Monte Carlo simulation (MCS) code in nuclear medicine for its high computational efficiency. However, current SimSET cannot simulate these isotopes due to the lack of modeling of complex decay scheme and the time-dependent decay process. To extend the versatility of SimSET for simulation of those multi-photon emission isotopes, a time-resolved multiple photon history generator based on SimSET codes is developed in present study. For developing the time-resolved SimSET (trSimSET) with radionuclide decay process, the new MCS model introduce new features, including decay time information and photon time-of-flight information, into this new code. The half-life of energy states were tabulated from the Evaluated Nuclear Structure Data File (ENSDF) database. The MCS results indicate that the overall percent difference is less than 8.5% for all simulation trials as compared to GATE. To sum up, we demonstrated that time-resolved SimSET multiple photon history generator can have comparable accuracy with GATE and keeping better computational efficiency. The new MCS code is very useful to study the multi-photon imaging of novel isotopes that needs the simulation of lifetime and the time-of-fight measurements. (authors)

  10. The influenza pandemic preparedness planning tool InfluSim

    Directory of Open Access Journals (Sweden)

    Duerr Hans-Peter

    2007-03-01

    Full Text Available Abstract Background Planning public health responses against pandemic influenza relies on predictive models by which the impact of different intervention strategies can be evaluated. Research has to date rather focused on producing predictions for certain localities or under specific conditions, than on designing a publicly available planning tool which can be applied by public health administrations. Here, we provide such a tool which is reproducible by an explicitly formulated structure and designed to operate with an optimal combination of the competing requirements of precision, realism and generality. Results InfluSim is a deterministic compartment model based on a system of over 1,000 differential equations which extend the classic SEIR model by clinical and demographic parameters relevant for pandemic preparedness planning. It allows for producing time courses and cumulative numbers of influenza cases, outpatient visits, applied antiviral treatment doses, hospitalizations, deaths and work days lost due to sickness, all of which may be associated with economic aspects. The software is programmed in Java, operates platform independent and can be executed on regular desktop computers. Conclusion InfluSim is an online available software http://www.influsim.info which efficiently assists public health planners in designing optimal interventions against pandemic influenza. It can reproduce the infection dynamics of pandemic influenza like complex computer simulations while offering at the same time reproducibility, higher computational performance and better operability.

  11. The USNO SIM Grid Star Selection Program

    Science.gov (United States)

    Mason, B. D.; Corbin, T. E.; Hajian, A. R.; Hummel, C. A.; Rafferty, T. J.; Urban, S. E.; Zacharias, N.

    1999-09-01

    The United States Naval Observatory (USNO) is in the process of preparing an input catalog of SIM grid stars by utilizing existing databases, observing capabilities, and instrumental development. The SIM grid should be astrometrically stable at the 4 mu as level over the five year life of the program, therefore, double and multiple stars must be avoided. Stars in the apparent magnitude range 6.5 Navy Prototype Optical Interferometer and wide-field CCD work. In addition, a Fourier Transform Spectrometer (FTS), with a potential for sub-meter per second radial velocity determinations, is being developed to eliminate companions (both stellar and substellar). In total, 7,200 candidate stars, evenly distributed over the sky will be examined observationally. The combination of the four astrometric methods will remove double and multiple systems in the ~ 15 arcsec to ~ 1 milliarcsecond range with Delta m_v of 3.5 magnitudes, while the FTS is expected to detect companions with masses as low as Saturn in the range of 0.1 to 10 au. The first year of the program has thus far seen significant progress. The SIM grid candidate list has been prepared and speckle observations of these candidates have begun: in the northern hemisphere, by the USNO and the RIT/Yale group (Elliott Horch & Zoran Nikov, Rochester Institute of Technology and William van Altena, Yale).

  12. Cross-Compiler for Modeling Space-Flight Systems

    Science.gov (United States)

    James, Mark

    2007-01-01

    Ripples is a computer program that makes it possible to specify arbitrarily complex space-flight systems in an easy-to-learn, high-level programming language and to have the specification automatically translated into LibSim, which is a text-based computing language in which such simulations are implemented. LibSim is a very powerful simulation language, but learning it takes considerable time, and it requires that models of systems and their components be described at a very low level of abstraction. To construct a model in LibSim, it is necessary to go through a time-consuming process that includes modeling each subsystem, including defining its fault-injection states, input and output conditions, and the topology of its connections to other subsystems. Ripples makes it possible to describe the same models at a much higher level of abstraction, thereby enabling the user to build models faster and with fewer errors. Ripples can be executed in a variety of computers and operating systems, and can be supplied in either source code or binary form. It must be run in conjunction with a Lisp compiler.

  13. CoolSim: using industrial modeling techniques to examine the impact of selective head cooling in a model of perinatal regionalization.

    Science.gov (United States)

    Gray, James; Geva, Alon; Zheng, Zheng; Zupancic, John A F

    2008-01-01

    A selective head-cooling device for the treatment of moderate to severe hypoxic-ischemic encephalopathy has been approved by the Food and Drug Administration for use in the United States. To reflect the complexity of health care delivery at the systems level, we used the industrial modeling technique of discrete event simulation to analyze the impact of various deployment strategies for selective head cooling and its partner technology, amplitude-integrated electroencephalography. We modeled the course through the perinatal system of all births in Massachusetts over a 1-year period. Cohort and care characteristics were drawn from existing databases. Results of a recently published trial were used to estimate the effects of selective head cooling. One thousand cohort replications were conducted to assess uncertainty. Several policy alternatives were examined, including no use of selective head cooling and scenarios that altered the number and placement of selective head-cooling and amplitude-integrated electroencephalography units throughout the state. Patient-level outcome and cost data were assessed. For all scenarios tested, the use of amplitude-integrated electroencephalography/selective head cooling resulted in better outcomes at lower cost. However, substantial differences in transfer rates, failure-to-cool rates, and total costs were seen across scenarios. Optimal decision-making regarding the number and placement of devices led to a 16% improvement in cost savings and a 10-fold decrease in failure-to-cool rates, compared with other deployment scenarios. These results were insensitive to significant changes in model inputs. On the basis of currently available data, the package of amplitude-integrated electroencephalography and selective head cooling seems to be an economically desirable intervention. Quantifiable techniques to assess system-wide technology performance provide a powerful approach to informing decisions regarding the structure and function of

  14. ToF-SIMS of tissues: "lessons learned" from mice and women.

    Science.gov (United States)

    Gamble, Lara J; Graham, Daniel J; Bluestein, Blake; Whitehead, Nicholas P; Hockenbery, David; Morrish, Fionnuala; Porter, Peggy

    2015-03-13

    The ability to image cells and tissues with chemical and molecular specificity could greatly expand our understanding of biological processes. The subcellular resolution mass spectral imaging capability of time of flight secondary ion mass spectrometry (ToF-SIMS) has the potential to acquire chemically detailed images. However, the complexities of biological systems combined with the sensitivity of ToF-SIMS require careful planning of experimental methods. Tissue sample preparation methods of formalin fixation followed by paraffin embedding (FFPE) and OCT embedding are compared. Results show that the FFPE can potentially be used as a tissue sample preparation protocol for ToF-SIMS analysis if a cluster ion pre-sputter is used prior to analysis and if nonlipid related tissue features are the features of interest. In contrast, embedding tissue in OCT minimizes contamination and maintains lipid signals. Various data acquisition methodologies and analysis options are discussed and compared using mouse breast and diaphragm muscle tissue. Methodologies for acquiring ToF-SIMS 2D images are highlighted along with applications of multivariate analysis to better identify specific features in a tissue sections when compared to H&E images of serial sections. Identification of tissue features is necessary for researchers to visualize a molecular map that correlates with specific biological features or functions. Finally, lessons learned from sample preparation, data acquisition, and data analysis methods developed using mouse models are applied to a preliminary analysis of human breast tumor tissue sections.

  15. Object-Oriented Agricultural System Modeling: Component-Driven Nutrient Dynamics and Crop Yield Simulations

    Science.gov (United States)

    Challenges in agro-ecosystem conservation management have created demand for state-of-the-art, integrated, and flexible modeling tools. For example, agricultural system modeling tools are needed which are robust and fast enough to be applied on large watershed scales, but which are also able to sim...

  16. Multimodal image fusion with SIMS: Preprocessing with image registration.

    Science.gov (United States)

    Tarolli, Jay Gage; Bloom, Anna; Winograd, Nicholas

    2016-06-14

    In order to utilize complementary imaging techniques to supply higher resolution data for fusion with secondary ion mass spectrometry (SIMS) chemical images, there are a number of aspects that, if not given proper consideration, could produce results which are easy to misinterpret. One of the most critical aspects is that the two input images must be of the same exact analysis area. With the desire to explore new higher resolution data sources that exists outside of the mass spectrometer, this requirement becomes even more important. To ensure that two input images are of the same region, an implementation of the insight segmentation and registration toolkit (ITK) was developed to act as a preprocessing step before performing image fusion. This implementation of ITK allows for several degrees of movement between two input images to be accounted for, including translation, rotation, and scale transforms. First, the implementation was confirmed to accurately register two multimodal images by supplying a known transform. Once validated, two model systems, a copper mesh grid and a group of RAW 264.7 cells, were used to demonstrate the use of the ITK implementation to register a SIMS image with a microscopy image for the purpose of performing image fusion.

  17. Model Systems

    Directory of Open Access Journals (Sweden)

    Francisco Rodríguez-Trelles

    1998-12-01

    Full Text Available Current efforts to study the biological effects of global change have focused on ecological responses, particularly shifts in species ranges. Mostly ignored are microevolutionary changes. Genetic changes may be at least as important as ecological ones in determining species' responses. In addition, such changes may be a sensitive indicator of global changes that will provide different information than that provided by range shifts. We discuss potential candidate systems to use in such monitoring programs. Studies of Drosophila subobscura suggest that its chromosomal inversion polymorphisms are responding to global warming. Drosophila inversion polymorphisms can be useful indicators of the effects of climate change on populations and ecosystems. Other species also hold the potential to become important indicators of global change. Such studies might significantly influence ecosystem conservation policies and research priorities.

  18. 基于SimMechanics的仿人机器人运动学仿真%Kinematics Simulation of Humanoid Robot Based on SimMechanics

    Institute of Scientific and Technical Information of China (English)

    江乐果; 朱华炳

    2014-01-01

    The SimMechanics of Matlab toolbox is used to build the simulation model of humanoid robot mechanism. According to the model diagram,the humanoid robot dynamic walking process was observed intuitively,and the angular acceleration of robot body center of gravity and torque variation map of hip joint were solved. A planner five-bar mechanism motion model simulating to the instan-taneous state of humanoid robot was established,based on Kane method to solve the dynamic equation of the mechanism. The SimMe-chanics simulation tools are applied in the mechanism analysis,which provides a convenient and simple method for the mechanical sys-tem simulation.%利用Matlab/SimMechanics机构仿真工具建立了仿人机器人机构的仿真模型,并由模型图直观地观察仿人机器人的动态步行过程,求出了机器人躯体重心的角加速度和髋关节的扭矩变化图。建立了仿人机器人的瞬时状态的平面五杆机构运动模型,根据Kane法求解出了机构的动力学方程。在机构分析中应用SimMechanics仿真工具,为机械系统的仿真提供一种十分简便的方法。

  19. Asyn-SimRank:An Asynchronous Large-Scale SimRank Algorithm%Asyn-SimRank:一种可异步执行的大规模 SimRank 算法

    Institute of Scientific and Technical Information of China (English)

    王春磊; 张岩峰; 鲍玉斌; 赵长宽; 于戈; 高立新

    2015-01-01

    SimRank 算法利用网络结构来评估网络中任意2点的相似性,它被广泛应用于社交网络和链接预测等诸多领域中.近年来,随着大数据技术的发展,SimRank 算法处理的数据不断增大,人们利用MapReduce 等分布式计算模型设计实现分布式的大规模 SimRank 算法来适应大数据处理的需求.但是,由于 SimRank 算法包含开销较大的迭代过程,每次迭代之后都需要一个全局同步,且每次迭代的计算复杂度高、通信量大,SimRank 算法不能在分布式环境下高效地实现.1)提出 Asyn‐SimRank 算法,该算法采用迭代‐累积的方式完成迭代计算,异步执行 SimRank 的核心迭代过程,避免了大规模分布式计算中的大量同步开销,同时有效降低计算量并减少通信开销;2)提出关键点优先调度计算,提升了 Asyn‐SimRank 算法的全局收敛速度;3)证明了 Asyn‐SimRank 算法的正确性和收敛性以及关键点优先调度计算的有效性;4)支持异步迭代的分布式框架 Maiter 上实现了 Asyn‐SimRank 算法.实验结果显示,相比较于 Hadoop ,Spark 上实现的 SimRank 算法和 Delta‐SimRank 算法,Asyn‐SimRank 算法大大提升了算法的计算效率,加速了算法收敛.%The SimRank algorithm , which exploits network structure to measure the similarity between node pairs ,has been widely used in many areas ,such as online social networks and link prediction .In recent years ,with the development of big data , the input data set of the SimRank algorithm is constantly increasing . People are utilizing distributed computing models , such as MapReduce ,to design large‐scale SimRank algorithm for solving the big data problems .However , since SimRank algorithm contains a high‐cost iterative process with synchronization barriers between iterations and the computational complexity is high in each iteration , the large‐scale Sim

  20. Electrospray Droplet Impact/SIMS

    Science.gov (United States)

    Hiraoka, Kenzo

    A new type of cluster SIMS, named as electrospray droplet impact (EDI), has been developed in our laboratory. It was found that peptides deposited on the stainless steel substrate were ionized/desorbed without the accumulation of radiation products. The organic samples with film thickness thinner than 10 monolayers are desorbed/ionized with little damage underneath the surface. In general, rather strong negative ions as well as positive ions are generated. The mechanism for the ionization/desorption in EDI is much less complicated than those for MALDI and SIMS due to the fact that only very thin sample layers take part in the shock-wave excited selvedge and higher-order side reactions are largely suppressed.

  1. Evaluation of the "added value" of SIMS: A mass spectrometric and spectroscopic study of an unusual Naples yellow oil paint reconstruction

    Science.gov (United States)

    Keune, Katrien; Hoogland, Frank; Boon, Jaap J.; Peggie, David; Higgitt, Catherine

    2009-07-01

    Naples yellow-containing oil paints aged under natural and artificial conditions were investigated as model systems to evaluate the potential of secondary ion mass spectrometry (SIMS) when used in combination with other mass spectrometric and spectroscopic analytical methods. Although the advantage of SIMS is the simultaneous detection of organic and inorganic components and their spatial distribution, the methodology has limitations in compound sensitivity and shows bias towards certain constituents. Gas chromatography-mass spectrometry (GC/MS) shows dicarboxylic fatty acids to be main components in the paint, but SIMS detects these compounds poorly. Electrospray ionisation mass spectrometry (ESI-MS) shows a broad range of glyceryl derivatives of mono- and dicarboxylic fatty acids (mono-, di- and triglyceride derivatives), while SIMS only detects the mono- and diglycerides of the monocarboxylic acids. Compared to SIMS, direct temperature-resolved mass spectrometry (DTMS) offers greater insight into how the various constituents are incorporated into the paint film, but SIMS data supports the information provided by Fourier transform infrared (FTIR) on metal soap formation. The surface sensitivity of SIMS is an advantage for probing paint constituent distributions and was exploited to examine variations in the composition of the top and bottom of a paint film, and the spatial correlation between metal and fatty acid composition in metal soap aggregates. Disadvantages of SIMS are the low yields and matrix dependency of the organic species in the paint matrix. Application of an ultra-thin gold coating overcomes this, and enhances the organic secondary ion yields leading to more accurate spatial distribution.

  2. Technical Features of Intelligent SIM Card Management System for Mobile Payments%智能电信卡管理系统支撑移动支付的技术特点

    Institute of Scientific and Technical Information of China (English)

    尹艳鹏; 宫雪

    2014-01-01

    介绍运营商在手机支付领域的智能电信卡应用技术,分析运营商在推广手机支付产品的运营风险,结合手机支付产业链各环节的适用性,提出一种以运营商密钥机制为基础,同时融合电信卡商、芯片厂商、POS机具制造商的智能新业务电信卡管理技术,并在全省的手机支付、智慧城市、行业信息化等领域进行应用。该智能新业务电信卡管理技术兼顾手机支付支撑系统的高可靠性,高稳定性以及零风险性的需求,具有可观的应用前景。%This paper Introduces operators' intel igent SIM card applications in the field of mobile payment technology, analyzes the operators in the mobile payment product operational risk, and combines with the applicability of mobile payment industrial chain each link. Then puts forward a kind of intel igent sim card management technology which is based on the operator key mechanism, as wel as fusion sim card, chip manufacturers and POS machine manufacturers, and in the province of mobile payment, wisdom for application in city, industry information, etc. The above-mentioned technology also gives attention to supporting new application system of high reliability, high stability, and the demand of the zero risk. It has considerable application prospects.

  3. TOF SIMS characterization of SEI layer on battery electrodes

    Science.gov (United States)

    Veryovkin, I. V.; Tripa, C. E.; Zinovev, A. V.; Baryshev, S. V.; Li, Y.; Abraham, D. P.

    2014-08-01

    In the last decade, many studies applied surface analysis techniques (SEM, XPS and SIMS) to understand the formation of SEI layers on Li-ion battery electrodes. This work was meant as a comparative model study of the SEI layer formation, which combined in situ SEM imaging with TOF SIMS depth profiling of four samples of the same graphite electrode material, which was subjected to different charge-discharge cycling schemes in a Li-ion battery. Besides comparing compositions of sub-surface regions of these differently processed electrodes, we wanted to know whether these compositions depend on after-cycling sample preparation, in particular if a brief exposure of these samples to air would affect the compositions measured by TOF SIMS. We found that the exposure to air (1) increases secondary ion yield for all species, and (2) changes shapes of SIMS depth profiles for some key species. For selected samples, we also conducted a comparison between the conventional single beam TOF-SIMS depth profiling and a high resolution dual beam depth profiling and found that the former approach can detect the same features in depth profiles as the latter one. We interpreted this as an indication that the sample surface morphology (high roughness) could be a limiting factor in this SEI study, suggesting that specially designed model samples with smooth surfaces are a better choice for future studies.

  4. Analysis of cryopreparated non-dehydrated sample systems by means of a newly developed Tof-SIMS instrument with integrated high-vacuum cutting apparature; Analysen kryopraeparierter nicht-dehydrierter Probensysteme mit Hilfe eines neu entwickelten ToF-SIMS-Instruments mit integrierter Hochvakuumkryoschnittapparatur

    Energy Technology Data Exchange (ETDEWEB)

    Moeller, Joerg

    2008-12-05

    Aim of the present thesis was to construct an analysis apparatus, which allows to perform on cryofixed samples a cryocutting respectively cryocracking preparation under vacuum conditions and in the following perform a Tof-SIMS analysis.

  5. Elemental and isotopic imaging of biological samples using NanoSIMS.

    Science.gov (United States)

    Kilburn, Matt R; Clode, Peta L

    2014-01-01

    With its low detection limits and the ability to analyze most of the elements in the periodic table, secondary ion mass spectrometry (SIMS) represents one of the most versatile in situ analytical techniques available, and recent developments have resulted in significant advantages for the use of imaging mass spectrometry in biological and biomedical research. Increases in spatial resolution and sensitivity allow detailed interrogation of samples at relevant scales and chemical concentrations. Advances in dynamic SIMS, specifically with the advent of NanoSIMS, now allow the tracking of stable isotopes within biological systems at subcellular length scales, while static SIMS combines subcellular imaging with molecular identification. In this chapter, we present an introduction to the SIMS technique, with particular reference to NanoSIMS, and discuss its application in biological and biomedical research.

  6. QCD at $\\Theta \\sim \\pi$

    CERN Document Server

    Smilga, A V

    1999-01-01

    Taking into account the quadratic in quark mass terms in the effective chiral lagrangian, we show that, at \\theta \\sim \\pi, the theory with 2 light quarks of equal mass involves two degenerate vacuum states separated by a barrier. For three flavors, the energy barrier between two vacua appears already in the leading order in mass. This corresponds to the first order phase transition at different vacua is calculated. In the immediate vicinity of the phase transition point, two minima of the potential still exist, but one of them becomes metastable. The probability of the false vacuum decay is estimated.

  7. Coupled Mooring Analyses for the WEC-Sim Wave Energy Converter Design Tool: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Sirnivas, Senu; Yu, Yi-Hsiang; Hall, Matthew; Bosma, Bret

    2016-07-01

    A wave-energy-converter-specific time-domain modeling method (WEC-Sim) was coupled with a lumped-mass-based mooring model (MoorDyn) to improve its mooring dynamics modeling capability. This paper presents a verification and validation study on the coupled numerical method. First, a coupled model was built to simulate a 1/25 model scale floating power system connected to a traditional three-point catenary mooring with an angle of 120 between the lines. The body response and the tension force on the mooring lines at the fairlead in decay tests and under regular and irregular waves were examined. To validate and verify the coupled numerical method, the simulation results were compared to the measurements from a wave tank test and a commercial code (OrcaFlex). Second, a coupled model was built to simulate a two-body point absorber system with a chain-connected catenary system. The influence of the mooring connection on the point absorber was investigated. Overall, the study showed that the coupling of WEC-Sim and the MoorDyn model works reasonably well for simulating a floating system with practical mooring designs and predicting the corresponding dynamic loads on the mooring lines. Further analyses on improving coupling efficiency and the feasibility of applying the numerical method to simulate WEC systems with more complex mooring configuration are still needed.

  8. Coupled Mooring Analyses for the WEC-Sim Wave Energy Converter Design Tool

    Energy Technology Data Exchange (ETDEWEB)

    Sirnivas, Senu; Yu, Yi-Hsiang; Hall, Matthew; Bosma, Bret

    2016-06-24

    A wave-energy-converter-specific time-domain modeling method (WEC-Sim) was coupled with a lumped-mass-based mooring model (MoorDyn) to improve its mooring dynamics modeling capability. This paper presents a verification and validation study on the coupled numerical method. First, a coupled model was built to simulate a 1/25 model scale floating power system connected to a traditional three-point catenary mooring with an angle of 120 between the lines. The body response and the tension force on the mooring lines at the fairlead in decay tests and under regular and irregular waves were examined. To validate and verify the coupled numerical method, the simulation results were compared to the measurements from a wave tank test and a commercial code (OrcaFlex). Second, a coupled model was built to simulate a two-body point absorber system with a chain-connected catenary system. The influence of the mooring connection on the point absorber was investigated. Overall, the study showed that the coupling of WEC-Sim and the MoorDyn model works reasonably well for simulating a floating system with practical mooring designs and predicting the corresponding dynamic loads on the mooring lines. Further analyses on improving coupling efficiency and the feasibility of applying the numerical method to simulate WEC systems with more complex mooring configuration are still needed.

  9. Experimental Results for SimFuels

    Energy Technology Data Exchange (ETDEWEB)

    Buck, Edgar C.; Casella, Andrew M.; Skomurski, Frances N.; MacFarlan, Paul J.; Soderquist, Chuck Z.; Wittman, Richard S.; Mcnamara, Bruce K.

    2012-08-22

    Assessing the performance of Spent (or Used) Nuclear Fuel (UNF) in geological repository requires quantification of time-dependent phenomena that may influence its behavior on a time-scale up to millions of years. A high-level waste repository environment will be a dynamic redox system because of the time-dependent generation of radiolytic oxidants and reductants and the corrosion of Fe-bearing canister materials. One major difference between used fuel and natural analogues, including unirradiated UO2, is the intense radiolytic field. The radiation emitted by used fuel can produce radiolysis products in the presence of water vapor or a thin-film of water that may increase the waste form degradation rate and change radionuclide behavior. To study UNF, we have been working on producing synthetic UO2 ceramics, or SimFuels that can be used in testing and which will contain specific radionuclides or non-radioactive analogs so that we can test the impact of radiolysis on fuel corrosion without using actual spent fuel. Although, testing actual UNF would be ideal for understanding the long term behavior of UNF, it requires the use of hot cells and is extremely expensive. In this report, we discuss, factors influencing the preparation of SimFuels and the requirements for dopants to mimic the behavior of UNF. We have developed a reliable procedure for producing large grain UO2 at moderate temperatures. This process will be applied to a series of different formulations.

  10. BioFET-SIM Web Interface: Implementation and Two Applications

    CERN Document Server

    Hediger, Martin R; De Vico, Luca

    2012-01-01

    We present a web interface for the BioFET-SIM program. The web interface allows to conveniently setup calculations based on the BioFET-SIM multiple charges model. As an illustration, two case studies are presented. In the first case, a generic peptide with opposite charges on both ends is inverted in orientation on a semiconducting nanowire surface leading to a corresponding change in sign of the computed sensitivity of the device. In the second case, the binding of an antibody/antigen complex on the nanowire surface is studied in terms of orientation and analyte/nanowire surface distance. We demonstrate how the BioFET-SIM web interface can aid in the understanding of experimental data and postulate alternative ways of antibody/antigen orientation on the nanowire surface.

  11. SimClust - A Program to Simulate Star Clusters

    CERN Document Server

    Deveikis, V; Stonkute, R; Bridzius, A; Vansevicius, V

    2009-01-01

    We present a program tool, SimClust, designed for Monte-Carlo modeling of star clusters. It populates the available stellar isochrones with stars according to the initial mass function and distributes stars randomly following the analytical surface number density profile. The tool is aimed at simulating realistic images of extragalactic star clusters and can be used to: (i) optimize object detection algorithms, (ii) perform artificial cluster tests for the analysis of star cluster surveys, and (iii) assess the stochastic effects introduced into photometric and structural parameters of clusters due to random distribution of luminous stars and non-uniform interstellar extinction. By applying SimClust, we have demonstrated a significant influence of stochastic effects on the determined photometric and structural parameters of low-mass star clusters in the M31 galaxy disk. The source code and examples are available at the SimClust website: http://www.astro.ff.vu.lt/software/simclust/

  12. Functionality of novel black silicon based nanostructured surfaces studied by TOF SIMS

    DEFF Research Database (Denmark)

    Talian, Ivan; Aranyosiova, M.; Orinak, A.

    2010-01-01

    depends on Ag layer thickness and measured ion mode (negative, positive). The best SIMS signal enhancement was obtained at BS2 surface coated with 400 nm of Ag layer. SIMS fragmentation schemes were developed for a model analyte deposited onto a silver and gold surface. Significant differences in pre...

  13. Improving the Molecular Ion Signal Intensity for In Situ Liquid SIMS Analysis

    Science.gov (United States)

    Zhou, Yufan; Yao, Juan; Ding, Yuanzhao; Yu, Jiachao; Hua, Xin; Evans, James E.; Yu, Xiaofei; Lao, David B.; Heldebrant, David J.; Nune, Satish K.; Cao, Bin; Bowden, Mark E.; Yu, Xiao-Ying; Wang, Xue-Lin; Zhu, Zihua

    2016-12-01

    In situ liquid secondary ion mass spectrometry (SIMS) enabled by system for analysis at the liquid vacuum interface (SALVI) has proven to be a promising new tool to provide molecular information at solid-liquid and liquid-vacuum interfaces. However, the initial data showed that useful signals in positive ion spectra are too weak to be meaningful in most cases. In addition, it is difficult to obtain strong negative molecular ion signals when m/z>200. These two drawbacks have been the biggest obstacle towards practical use of this new analytical approach. In this study, we report that strong and reliable positive and negative molecular signals are achievable after optimizing the SIMS experimental conditions. Four model systems, including a 1,8-diazabicycloundec-7-ene (DBU)-base switchable ionic liquid, a live Shewanella oneidensis biofilm, a hydrated mammalian epithelia cell, and an electrolyte popularly used in Li ion batteries were studied. A signal enhancement of about two orders of magnitude was obtained in comparison with non-optimized conditions. Therefore, molecular ion signal intensity has become very acceptable for use of in situ liquid SIMS to study solid-liquid and liquid-vacuum interfaces.

  14. Improving the Molecular Ion Signal Intensity for In Situ Liquid SIMS Analysis

    Science.gov (United States)

    Zhou, Yufan; Yao, Juan; Ding, Yuanzhao; Yu, Jiachao; Hua, Xin; Evans, James E.; Yu, Xiaofei; Lao, David B.; Heldebrant, David J.; Nune, Satish K.; Cao, Bin; Bowden, Mark E.; Yu, Xiao-Ying; Wang, Xue-Lin; Zhu, Zihua

    2016-09-01

    In situ liquid secondary ion mass spectrometry (SIMS) enabled by system for analysis at the liquid vacuum interface (SALVI) has proven to be a promising new tool to provide molecular information at solid-liquid and liquid-vacuum interfaces. However, the initial data showed that useful signals in positive ion spectra are too weak to be meaningful in most cases. In addition, it is difficult to obtain strong negative molecular ion signals when m/z>200. These two drawbacks have been the biggest obstacle towards practical use of this new analytical approach. In this study, we report that strong and reliable positive and negative molecular signals are achievable after optimizing the SIMS experimental conditions. Four model systems, including a 1,8-diazabicycloundec-7-ene (DBU)-base switchable ionic liquid, a live Shewanella oneidensis biofilm, a hydrated mammalian epithelia cell, and an electrolyte popularly used in Li ion batteries were studied. A signal enhancement of about two orders of magnitude was obtained in comparison with non-optimized conditions. Therefore, molecular ion signal intensity has become very acceptable for use of in situ liquid SIMS to study solid-liquid and liquid-vacuum interfaces.

  15. Improving the Molecular Ion Signal Intensity for In Situ Liquid SIMS Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, Yufan; Yao, Juan; Ding, Yuanzhao; Yu, Jiachao; Hua, Xin; Evans, James E.; Yu, Xiaofei; Lao, David B.; Heldebrant, David J.; Nune, Satish K.; Cao, Bin; Bowden, Mark E.; Yu, Xiao-Ying; Wang, Xue-Lin; Zhu, Zihua

    2016-09-06

    In situ liquid secondary ion mass spectrometry (SIMS) enabled by system for analysis at the liquid vacuum interface (SALVI) has proven to be a promising new tool to provide molecular information at solid–liquid and liquid–vacuum interfaces. However, the initial data showed that useful signals in positive ion spectra are too weak to be meaningful in most cases. In addition, it is difficult to obtain strong negative molecular ion signals when m/z>200. These two drawbacks have been the biggest obstacle towards practical use of this new analytical approach. In this study, we report that strong and reliable positive and negative molecular signals are achievable after optimizing the SIMS experimental conditions. Four model systems, including a 1,8-diazabicycloundec-7-ene (DBU)-base switchable ionic liquid, a live Shewanella oneidensis biofilm, a hydrated mammalian epithelia cell, and an electrolyte popularly used in Li ion batteries were studied. A signal enhancement of about two orders of magnitude was obtained in comparison with non-optimized conditions. Therefore, molecular ion signal intensity has become very acceptable to use for in situ liquid SIMS to study solid–liquid and liquid–vacuum interfaces.

  16. Continuous system modeling

    Science.gov (United States)

    Cellier, Francois E.

    1991-01-01

    A comprehensive and systematic introduction is presented for the concepts associated with 'modeling', involving the transition from a physical system down to an abstract description of that system in the form of a set of differential and/or difference equations, and basing its treatment of modeling on the mathematics of dynamical systems. Attention is given to the principles of passive electrical circuit modeling, planar mechanical systems modeling, hierarchical modular modeling of continuous systems, and bond-graph modeling. Also discussed are modeling in equilibrium thermodynamics, population dynamics, and system dynamics, inductive reasoning, artificial neural networks, and automated model synthesis.

  17. 20-Sim ANSI-C code on a 8051 target

    NARCIS (Netherlands)

    Geerlings, Joël

    2001-01-01

    In the forth-coming version of 20-sim the option code-generation for targets will be available. After selection of a template, it’s filled in with model specific information. Then this adapted template can be compiled and linked such that it can be run on the target. Theo Lammerink designed around t

  18. Spatially resolved quantification of organic matter in synthetic organo-mineral associations by NanoSIMS

    Science.gov (United States)

    Schurig, Christian; Schrank, Thomas; Müller, Carsten W.; Pohl, Lydia; Höschen, Carmen; Totsche, Kai-Uwe; Kögel-Knabner, Ingrid

    2016-04-01

    Soil structure is resulting from soil forming processes at the molecular scale, but has feedbacks on soil functions on macroscopic or even global scales. In this framework, soil organic matter (SOM) is of special importance as a gluing agent for soil structure, besides being a carbon sink. Conventional bulk-scale analyses allows for quantification and for a characterisation of the chemical bonding types of OM. However, all information of the spatial distribution of OM on the relevant scale of few nano- to micrometres is lost during this kind of analyses. While nano-scale secondary ion mass-spectroscopy (NanoSIMS) delivers qualitative data on the spatial distribution of SOM at the nano-scale, receiving quantitative data from this method remains challenging due to matrix and charging effects. In order to overcome this problem, the aim of this study was to develop scaling factors between conventional bulk-scale methods and NanoSIMS. For developing these factors, dissolved organic matter (DOM) was extracted from organic material, which was sampled from a podzol. Subsequently, model minerals, such as boehmite and illite, were loaded with defined amounts of this DOM by means of sorption experiments. After the end of the experiments the liquid and solid phases were divided by means of centrifugation and the solid phase was subjected to freeze drying. Carbon and nitrogen content of the solid and liquid phases were measured via C/N and TOC analyses, respectively. The measured data was fitted with Freundlich-type adsorption isotherms. Samples for NanoSIMS analyses were distributed onto silicon wafers as individual particles. The following elements were analysed: C, N, O, Si, S and Al. Spatially resolved analysis of the NanoSIMS data yielded a increased detection of SOM on the minerals in higher concentration steps. Linear relationships with high correlation and low deviation were found when comparing the spatially resolved NanoSIMS data with the bulk scale methods. The

  19. System-level modeling for geological storage of CO2

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yingqi; Oldenburg, Curtis M.; Finsterle, Stefan; Bodvarsson, Gudmundur S.

    2006-04-24

    One way to reduce the effects of anthropogenic greenhousegases on climate is to inject carbon dioxide (CO2) from industrialsources into deep geological formations such as brine formations ordepleted oil or gas reservoirs. Research has and is being conducted toimprove understanding of factors affecting particular aspects ofgeological CO2 storage, such as performance, capacity, and health, safetyand environmental (HSE) issues, as well as to lower the cost of CO2capture and related processes. However, there has been less emphasis todate on system-level analyses of geological CO2 storage that considergeological, economic, and environmental issues by linking detailedrepresentations of engineering components and associated economic models.The objective of this study is to develop a system-level model forgeological CO2 storage, including CO2 capture and separation,compression, pipeline transportation to the storage site, and CO2injection. Within our system model we are incorporating detailedreservoir simulations of CO2 injection and potential leakage withassociated HSE effects. The platform of the system-level modelingisGoldSim [GoldSim, 2006]. The application of the system model is focusedon evaluating the feasibility of carbon sequestration with enhanced gasrecovery (CSEGR) in the Rio Vista region of California. The reservoirsimulations are performed using a special module of the TOUGH2 simulator,EOS7C, for multicomponent gas mixtures of methane and CO2 or methane andnitrogen. Using this approach, the economic benefits of enhanced gasrecovery can be directly weighed against the costs, risks, and benefitsof CO2 injection.

  20. Modeling and application of wind turbine generating system (WTGS) to distribution systems

    Energy Technology Data Exchange (ETDEWEB)

    Eminoglu, Ulas [Nigde University, Department of Electrical and Electronics Engineering, 51245 Nigde (Turkey)

    2009-11-15

    This paper describes two new models for wind turbine generating systems (WTGSs), widely used as distributed generation sources in distribution systems. These models are developed by using the modifications of bi-quadratic equation which is generally used for the calculation of node voltages in distribution systems' load flow analysis. The developed models are validated with an experimental setup composed by an induction generator coupled with an induction motor as a prime mover, and with the calculated values obtained by using the other models reported in the literature. They are also incorporated into distribution systems' load flow analysis, and the results are compared with the results of their Simulink models. Simulink models are developed in Matlab using SimPowerSystems Blockset. (author)

  1. Dynamic Modeling and Simulation of an Underactuated System

    Science.gov (United States)

    Libardo Duarte Madrid, Juan; Ospina Henao, P. A.; González Querubín, E.

    2017-06-01

    In this paper, is used the Lagrangian classical mechanics for modeling the dynamics of an underactuated system, specifically a rotary inverted pendulum that will have two equations of motion. A basic design of the system is proposed in SOLIDWORKS 3D CAD software, which based on the material and dimensions of the model provides some physical variables necessary for modeling. In order to verify the results obtained, a comparison the CAD model simulated in the environment SimMechanics of MATLAB software with the mathematical model who was consisting of Euler-Lagrange’s equations implemented in Simulink MATLAB, solved with the ODE23tb method, included in the MATLAB libraries for the solution of systems of equations of the type and order obtained. This article also has a topological analysis of pendulum trajectories through a phase space diagram, which allows the identification of stable and unstable regions of the system.

  2. FabSim: Facilitating computational research through automation on large-scale and distributed e-infrastructures

    Science.gov (United States)

    Groen, Derek; Bhati, Agastya P.; Suter, James; Hetherington, James; Zasada, Stefan J.; Coveney, Peter V.

    2016-10-01

    We present FabSim, a toolkit developed to simplify a range of computational tasks for researchers in diverse disciplines. FabSim is flexible, adaptable, and allows users to perform a wide range of tasks with ease. It also provides a systematic way to automate the use of resources, including HPC and distributed machines, and to make tasks easier to repeat by recording contextual information. To demonstrate this, we present three use cases where FabSim has enhanced our research productivity. These include simulating cerebrovascular bloodflow, modelling clay-polymer nanocomposites across multiple scales, and calculating ligand-protein binding affinities. Catalogue identifier: AFAO_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AFAO_v1_0.html Program obtainable from: CPC Programme Library, Queen's University, Belfast, N. Ireland Licensing provisions: BSD 3-Clause No. of lines in distributed program, including test data, etc.: 268282 No. of bytes in distributed program, including test data, etc.: 2791792 Distribution format: tar.gz Programming language: Python. Computer: PC or Mac. Operating system: Unix, OSX. RAM: 1 Gbytes Classification: 3, 4, 6.5. External routines: NumPy, SciPy, Fabric (1.5 or newer), PyYaml Nature of problem: Running advanced computations using remote resources is an activity that requires considerable time and human attention. These activities, such as organizing data, configuring software and setting up individual runs often vary slightly each time they are performed. To lighten this burden, we required an approach that introduced little burden of its own to set up and adapt, beyond which very substantial productivity ensues. Solution method: We present a toolkit which helps to simplify and automate the activities which surround computational science research. FabSim is aimed squarely at the experienced computational scientist, who can use the command line interface and a system of modifiable content to quickly automate sets of

  3. Development practices and lessons learned in developing SimPEG

    Science.gov (United States)

    Cockett, R.; Heagy, L. J.; Kang, S.; Rosenkjaer, G. K.

    2015-12-01

    Inverse modelling provides a mathematical framework for constructing a model of physical property distributions in the subsurface that are consistent with the data collected in geophysical surveys. The geosciences are increasingly moving towards the integration of geological, geophysical, and hydrological information to better characterize the subsurface. This integration must span disciplines and is not only challenging scientifically, but additionally the inconsistencies between conventions often makes implementations complicated, non­ reproducible, or inefficient. SimPEG is an open-source, multi-university effort aimed at providing a generalized framework for solving forward and inverse problems. SimPEG includes finite volume discretizations on structured and unstructured meshes, interfaces to standard numerical solver packages, convex optimization algorithms, model parameterizations, and visualization routines. The SimPEG package (http://simpeg.xyz) supports an ecosystem of forward and inverse modelling applications, including electromagnetics, vadose zone flow, seismic, and potential­ fields, that are all written with a common interface and toolbox. The goal of SimPEG is to support a community of researchers with well-tested, extensible tools, and encourage transparency and reproducibility both of the SimPEG software and the geoscientific research it is applied to. In this presentation, we will share some of the lessons we have learned in designing the modular infrastructure, testing and development practices of SimPEG. We will discuss our use of version control, extensive unit-testing, continuous integration, documentation, issue tracking, and resources that facilitate communication between existing team members and allows new researchers to get involved. These practices have enabled the use of SimPEG in research, industry, and education as well as the ability to support a growing number of dependent repositories and applications. We hope that sharing our

  4. Automatization Project for the Carl-Zeiss-Jena Coudè Telescope of the Simón Bolívar Planetarium I. The Electro-Mechanic System

    Science.gov (United States)

    Núñez, A.; Maharaj, A.; Muñoz, A. G.

    2009-05-01

    The ``Complejo Científico, Cultural y Turístico Simón Bolívar'' (CCCTSB), located in Maracaibo, Venezuela, lodges the Simón Bolívar Planetarium and an 150 mm aperture, 2250 mm focal length Carl-Zeiss-Jena Coudè refractor telescope. In this work we discuss the schematics for the automatization project of this Telescope, the planned improvements, methodology, engines, micro-controllers, interfaces and the uptodate status of the project. This project is working on the first two levels of the automation pyramid, the sensor -- actuator level and the control or Plant floor level. The Process control level correspond to the software related section. This mean that this project work immediately with the electrical, electronic and mechanical stuffs, and with the assembler micro controller language. All the pc related stuff, like GUI (Graphic user interfaces), remote control, Grid database, and others, correspond to the next two automation pyramid levels. The idea is that little human intervention will be required to manipulate the telescope, only giving a pair of coordinates to ubicate and follow an object on the sky. A set of three servomotors, coupling it with the telescope with a gear box, are going to manipulate right ascension, declination and focus movement. For the dome rotation, a three phase induction motor will be used. For dome aperture/closure it is suggested a DC motor powered with solar panels. All those actuators are controlled by a 8 bits micro-controller, which receive the coordinate imput, the signal from the position sensors and have the PID control algorithm. This algorithm is tuned based on the mathematical model of the telescope electro-mechanical instrumentation.

  5. Subcellular boron and fluorine distributions with SIMS ion microscopy in BNCT and cancer research

    Energy Technology Data Exchange (ETDEWEB)

    Subhash Chandra

    2008-05-30

    The development of a secondary ion mass spectrometry (SIMS) based technique of Ion Microscopy in boron neutron capture therapy (BNCT) was the main goal of this project, so that one can study the subcellular location of boron-10 atoms and their partitioning between the normal and cancerous tissue. This information is fundamental for the screening of boronated drugs appropriate for neutron capture therapy of cancer. Our studies at Cornell concentrated mainly on studies of glioblastoma multiforme (GBM). The early years of the grant were dedicated to the development of cryogenic methods and correlative microscopic approaches so that a reliable subcellular analysis of boron-10 atoms can be made with SIMS. In later years SIMS was applied to animal models and human tissues of GBM for studying the efficacy of potential boronated agents in BNCT. Under this grant the SIMS program at Cornell attained a new level of excellence and collaborative SIMS studies were published with leading BNCT researchers in the U.S.

  6. Non primary standards SIM force comparison up to 10 kn

    Directory of Open Access Journals (Sweden)

    Claudia Santo

    2011-04-01

    Full Text Available This force comparison was performed among IDIC (Chile, LATU (Uruguay and CENAM (Mexico, national laboratories within the Interamerican Metrology System (SIM region. Each laboratory used its national standard for the established measuring range. The comparison started in August 2002 and finished in September 2004. This comparison is the second part of a SIM primary standards comparison carried out with the participation of INMETRO (Brazil, INTI (Argentina and SIC (Colombia, having CENAM as pilot laboratory, (SIM comparison number SIM 7.7. This comparison has an overlap with the force steps used in the CIPM Key Comparison CCM.F-K1.a and CCM.F-K1.b., force points 5 kN and 10 kN.The objective of the comparison was to estimate the level of agreement for the realization of the quantity force and the uncertainty associated to its measurement in the range up to 10 kN. Two transducers (load cells were used as transfer standards, to obtain its maximum accuracy, thecomparison range was selected from 4 kN to 10 kN (starting at 40% of the full load cells range. The results obtained by the participating laboratories were in agreement according to the analysis of comparability performed by the normalized error equation and the Youden plot techniques used.

  7. Challenges of biological sample preparation for SIMS imaging of elements and molecules at subcellular resolution

    Energy Technology Data Exchange (ETDEWEB)

    Chandra, Subhash [Cornell SIMS Laboratory, Department of Earth and Atmospheric Sciences, Snee Hall, Cornell University, Ithaca, NY 14853 (United States)], E-mail: sc40@cornell.edu

    2008-12-15

    -low Na signature in individual cells provided a rule-of-thumb criterion for the validation of sample preparation. The fractured freeze-dried cells allowed 3-D SIMS imaging and localization of {sup 13}C{sup 15}N labeled molecules and therapeutic drugs containing an elemental tag. Examples are shown to demonstrate that both diffusible elements and molecules are prone to artifact-induced relocation at subcellular scale if the sample preparation is compromised. The sample preparation is problem dependent and may vary widely between the diverse sample types of biological systems and the type of instrument used for SIMS analysis. The sample preparation, however, must be validated so that SIMS can be applied with confidence in biology and medicine.

  8. Designing a new tool for modeling and simulation of discrete-event based systems

    OpenAIRE

    2009-01-01

    This paper talks about design, development, and application of a new Petri net simulator for modeling and simulation of discrete event system (e.g. information systems). The new tool is called GPenSIM (General purpose Petri Net Simulator). Firstly, this paper presents the reason for developing a new tool, through a brief literature study. Secondly, the design and architectural issues of the tool is given. Finally, an application example is given on the application of the tool.

  9. G-SIMS of crystallisable organics

    Energy Technology Data Exchange (ETDEWEB)

    Gilmore, I.S.; Seah, M.P

    2003-01-15

    In this study, the gentle SIMS (G-SIMS) concept has been applied to the crystallisable organic materials of Irganox 1010, caffeine, cholesterol, glucose, poly-L-lysine and bovine serum albumin. These are chosen to represent as wide a range of material types as possible. For each case, the G-SIMS spectra are considerably simpler than the static SIMS, enabling direct interpretation and identification. It is demonstrated that the amount of fragmentation in the mass spectrum may be controlled numerically and this information can be used to re-assemble the parent molecule. Wherever possible, the use of dual column ion beams is recommended to eliminate alignment requirements. Additionally, the total electron beam fluence should be kept below 6x10{sup 18} electrons/m{sup 2} to prevent electron damage.

  10. G-SIMS of crystallisable organics

    Science.gov (United States)

    Gilmore, I. S.; Seah, M. P.

    2003-01-01

    In this study, the gentle SIMS (G-SIMS) concept has been applied to the crystallisable organic materials of Irganox 1010, caffeine, cholesterol, glucose, poly- L-lysine and bovine serum albumin. These are chosen to represent as wide a range of material types as possible. For each case, the G-SIMS spectra are considerably simpler than the static SIMS, enabling direct interpretation and identification. It is demonstrated that the amount of fragmentation in the mass spectrum may be controlled numerically and this information can be used to re-assemble the parent molecule. Wherever possible, the use of dual column ion beams is recommended to eliminate alignment requirements. Additionally, the total electron beam fluence should be kept below 6×10 18 electrons/m 2 to prevent electron damage.

  11. Se i Sims vanno su Facebook…

    Directory of Open Access Journals (Sweden)

    Agata Meneghelli

    2012-03-01

    Full Text Available Subito dopo il lancio, la versione facebookiana di The Sims ha riscosso un enorme successo, ma a distanza di qualche mese si è registrato un significativo calo di interesse. L’articolo propone una possibile lettura di questo fenomeno, partendo da alcune caratteristiche della serie The Sims e mostrando come il gioco si sia modificato, sposandosi con le logiche 2.0 di Facebook, per diventare più social e in real time.

  12. Modelling Railway Interlocking Systems

    DEFF Research Database (Denmark)

    Lindegaard, Morten Peter; Viuf, P.; Haxthausen, Anne Elisabeth

    2000-01-01

    In this report we present a model of interlocking systems, and describe how the model may be validated by simulation. Station topologies are modelled by graphs in which the nodes denote track segments, and the edges denote connectivity for train traÆc. Points and signals are modelled by annotatio...

  13. Execution of the SimSET Monte Carlo PET/SPECT simulator in the condor distributed computing environment.

    Science.gov (United States)

    Baum, Karl G; Helguera, María

    2007-11-01

    SimSET is a package for simulation of emission tomography data sets. Condor is a popular distributed computing environment. Simple C/C++ applications and shell scripts are presented which allow the execution of SimSET on the Condor environment. This is accomplished without any modification to SimSET by executing multiple instances and using its combinebin utility. This enables research facilities without dedicated parallel computing systems to utilize the idle cycles of desktop workstations to greatly reduce the run times of their SimSET simulations. The necessary steps to implement this approach in other environments are presented along with sample results.

  14. SimVascular: An Open Source Pipeline for Cardiovascular Simulation.

    Science.gov (United States)

    Updegrove, Adam; Wilson, Nathan M; Merkow, Jameson; Lan, Hongzhi; Marsden, Alison L; Shadden, Shawn C

    2017-03-01

    Patient-specific cardiovascular simulation has become a paradigm in cardiovascular research and is emerging as a powerful tool in basic, translational and clinical research. In this paper we discuss the recent development of a fully open-source SimVascular software package, which provides a complete pipeline from medical image data segmentation to patient-specific blood flow simulation and analysis. This package serves as a research tool for cardiovascular modeling and simulation, and has contributed to numerous advances in personalized medicine, surgical planning and medical device design. The SimVascular software has recently been refactored and expanded to enhance functionality, usability, efficiency and accuracy of image-based patient-specific modeling tools. Moreover, SimVascular previously required several licensed components that hindered new user adoption and code management and our recent developments have replaced these commercial components to create a fully open source pipeline. These developments foster advances in cardiovascular modeling research, increased collaboration, standardization of methods, and a growing developer community.

  15. Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language.

    Science.gov (United States)

    Roehner, Nicholas; Zhang, Zhen; Nguyen, Tramy; Myers, Chris J

    2015-08-21

    In the context of synthetic biology, model generation is the automated process of constructing biochemical models based on genetic designs. This paper discusses the use cases for model generation in genetic design automation (GDA) software tools and introduces the foundational concepts of standards and model annotation that make this process useful. Finally, this paper presents an implementation of model generation in the GDA software tool iBioSim and provides an example of generating a Systems Biology Markup Language (SBML) model from a design of a 4-input AND sensor written in the Synthetic Biology Open Language (SBOL).

  16. Stellar and Galactic Astrophysics with SIM

    Science.gov (United States)

    Gould, A.

    2001-05-01

    SIM will revolutionize stellar and Galactic astrophysics by tackling new questions that could never previously be addressed and making order of magnitude improvements in key parameters. SIM will measure R0 and Theta0 to measurements of the Milky Way mass and rotation curve. It will probe the Galactic 3-D mass distribution by 2 independent methods. By calibrating the RR Lyrae MV-[Fe/H] relation as well as obtaining direct distances to clusters and halo field objects, SIM will precisely date halo and globular-cluster formation as a function of metallicity. SIM will obtain 1 measurements for 200 stars of all types ranging from brown dwarfs (BD) to O stars from a broad range of metallicities, including both binaries and single stars, and it will yield precision measurements of white dwarf (WD) and black hole (BH) remnants as well. SIM microlensing will take an unbiased census of all objects in the Galactic bulge, both dark (BD WD NS BH) and luminous, and will resolve the nature of the dark-halo (MACHO) candidates currently being detected toward the LMC.

  17. iFogSim: A Toolkit for Modeling and Simulation of Resource Management Techniques in Internet of Things, Edge and Fog Computing Environments

    OpenAIRE

    Gupta, Harshit; Dastjerdi, Amir Vahid; Ghosh, Soumya K.; Buyya, Rajkumar

    2016-01-01

    Internet of Things (IoT) aims to bring every object (e.g. smart cameras, wearable, environmental sensors, home appliances, and vehicles) online, hence generating massive amounts of data that can overwhelm storage systems and data analytics applications. Cloud computing offers services at the infrastructure level that can scale to IoT storage and processing requirements. However, there are applications such as health monitoring and emergency response that require low latency, and delay caused ...

  18. Selected System Models

    Science.gov (United States)

    Schmidt-Eisenlohr, F.; Puñal, O.; Klagges, K.; Kirsche, M.

    Apart from the general issue of modeling the channel, the PHY and the MAC of wireless networks, there are specific modeling assumptions that are considered for different systems. In this chapter we consider three specific wireless standards and highlight modeling options for them. These are IEEE 802.11 (as example for wireless local area networks), IEEE 802.16 (as example for wireless metropolitan networks) and IEEE 802.15 (as example for body area networks). Each section on these three systems discusses also at the end a set of model implementations that are available today.

  19. IEA ECBCS Annex 42 'FC+GOGEN-SIM'. The simulation of building-integrated fuel cell and other cogeneration systems - Summary; IEA ECBCS Annex 42 'FC+GOGEN-SIM'. The simulation of building-integrated fuel cell and other cogeneration systems - Summary

    Energy Technology Data Exchange (ETDEWEB)

    Dorer, V.

    2008-07-01

    This summary report for the Swiss Federal Office of Energy (SFOE) takes a look at the results of three sub-tasks performed within the framework of an IEA task-annex. The sub-tasks aimed to develop simulation models for fuel-cell appliances and other micro-CHP units and to integrate them into various building simulation programs. The first sub-task covered the compilation of a technology overview as well as household power and hot-water requirements. The second one was devoted to the development of models for micro-CHP units. A third sub-task covered the simulation of various system configurations and evaluated general methods for dealing with energy, emissions and costs. The work done is briefly reviewed and the various institutions involved in the work are noted.

  20. Mass assembly and morphological transformations since $z\\sim3$ from CANDELS

    CERN Document Server

    Huertas-Company, M; Pérez-González, P G; Ashby, M L N; Barro, G; Conselice, C; Daddi, E; Dekel, A; Dimauro, P; Faber, S M; Grogin, N A; Kartaltepe, J S; Kocevski, D D; Koekemoer, A M; Koo, D C; Mei, S; Shankar, F

    2016-01-01

    [abridged] We quantify the evolution of the stellar mass functions of star-forming and quiescent galaxies as a function of morphology from $z\\sim 3$ to the present. Our sample consists of ~50,000 galaxies in the CANDELS fields ($\\sim880$ $arcmin^2$), which we divide into four main morphological types, i.e. pure bulge dominated systems, pure spiral disk dominated, intermediate 2-component bulge+disk systems and irregular disturbed galaxies. Our main results are: Star-formation: At $z\\sim 2$, 80\\% of the stellar mass density of star-forming galaxies is in irregular systems. However, by $z\\sim 0.5$, irregular objects only dominate at stellar masses below $10^9M\\odot$. A majority of the star-forming irregulars present at $z\\sim 2$ undergo a gradual transformation from disturbed to normal spiral disk morphologies by $z\\sim 1$ without significant interruption to their star-formation. Rejuvenation after a quenching event does not seem to be common except perhaps for the most massive objects. Quenching: We confirm th...

  1. SimCADO - an instrument data simulator package for MICADO at the E-ELT

    CERN Document Server

    Leschinski, Kieran; Köhler, Rainer; Mach, Michael; Zeilinger, Werner; Kleijn, Gijs Verdoes; Alves, Joao; Kausch, Wolfgang; Przybilla, Norbert

    2016-01-01

    MICADO will be the first-light wide-field imager for the European Extremely Large Telescope (E-ELT) and will provide difiraction limited imaging (7mas at 1.2mm) over a ~53 arcsecond field of view. In order to support various consortium activities we have developed a first version of SimCADO: an instrument simulator for MICADO. SimCADO uses the results of the detailed simulation efforts conducted for each of the separate consortium-internal work packages in order to generate a model of the optical path from source to detector readout. SimCADO is thus a tool to provide scientific context to both the science and instrument development teams who are ultimately responsible for the final design and future capabilities of the MICADO instrument. Here we present an overview of the inner workings of SimCADO and outline our plan for its further development.

  2. Modeling cellular systems

    CERN Document Server

    Matthäus, Franziska; Pahle, Jürgen

    2017-01-01

    This contributed volume comprises research articles and reviews on topics connected to the mathematical modeling of cellular systems. These contributions cover signaling pathways, stochastic effects, cell motility and mechanics, pattern formation processes, as well as multi-scale approaches. All authors attended the workshop on "Modeling Cellular Systems" which took place in Heidelberg in October 2014. The target audience primarily comprises researchers and experts in the field, but the book may also be beneficial for graduate students.

  3. Multiscale Cloud System Modeling

    Science.gov (United States)

    Tao, Wei-Kuo; Moncrieff, Mitchell W.

    2009-01-01

    The central theme of this paper is to describe how cloud system resolving models (CRMs) of grid spacing approximately 1 km have been applied to various important problems in atmospheric science across a wide range of spatial and temporal scales and how these applications relate to other modeling approaches. A long-standing problem concerns the representation of organized precipitating convective cloud systems in weather and climate models. Since CRMs resolve the mesoscale to large scales of motion (i.e., 10 km to global) they explicitly address the cloud system problem. By explicitly representing organized convection, CRMs bypass restrictive assumptions associated with convective parameterization such as the scale gap between cumulus and large-scale motion. Dynamical models provide insight into the physical mechanisms involved with scale interaction and convective organization. Multiscale CRMs simulate convective cloud systems in computational domains up to global and have been applied in place of contemporary convective parameterizations in global models. Multiscale CRMs pose a new challenge for model validation, which is met in an integrated approach involving CRMs, operational prediction systems, observational measurements, and dynamical models in a new international project: the Year of Tropical Convection, which has an emphasis on organized tropical convection and its global effects.

  4. A search for H$\\alpha$ emission in high-metallicity damped Lyman-$\\alpha$ systems at $z \\sim 2.4$

    CERN Document Server

    Wang, Wei-Hao; Prochaska, J Xavier

    2015-01-01

    We report on a sensitive search for redshifted H$\\alpha$ line-emission from three high-metallicity damped Ly$\\alpha$ absorbers (DLAs) at $z \\approx 2.4$ with the Near-infrared Integral Field Spectrometer (NIFS) on the Gemini-North telescope, assisted by the ALTtitude conjugate Adaptive optics for the InfraRed (ALTAIR) system with a laser guide star. Within the NIFS field-of-view, $\\approx 3.22" \\times 2.92"$ corresponding to $\\approx 25$ kpc $ \\times 23$ kpc at $z=2.4$, we detect no statistically significant line-emission at the expected redshifted H$\\alpha$ wavelengths. The measured root-mean-square noise fluctuations in $0.4"$ apertures are $1-3\\times10^{-18}$ erg s$^{-1}$ cm$^{-2}$. Our analysis of simulated, compact, line-emitting sources yields stringent limits on the star-formation rates (SFRs) of the three DLAs, $< 2.2$~M$_{\\odot}$ yr$^{-1}$ ($3\\sigma$) for two absorbers, and $< 11$~M$_{\\odot}$ yr$^{-1}$ ($3\\sigma$) for the third, at all impact parameters within $\\approx 12.5$~kpc to the quasar s...

  5. Dynamic Systems Modeling

    Directory of Open Access Journals (Sweden)

    Sorin Dan ŞANDOR

    2003-01-01

    Full Text Available System Dynamics was introduced by Jay W. Forrester in the 1960s. Since then the methodology was adopted in many areas of natural or social sciences. This article tries to present briefly how this methodology works, both as Systems Thinking and as Modelling with Vensim computer software.

  6. Reducing the Matrix Effect in Organic Cluster SIMS Using Dynamic Reactive Ionization

    Science.gov (United States)

    Tian, Hua; Wucher, Andreas; Winograd, Nicholas

    2016-12-01

    Dynamic reactive ionization (DRI) utilizes a reactive molecule, HCl, which is doped into an Ar cluster projectile and activated to produce protons at the bombardment site on the cold sample surface with the presence of water. The methodology has been shown to enhance the ionization of protonated molecular ions and to reduce salt suppression in complex biomatrices. In this study, we further examine the possibility of obtaining improved quantitation with DRI during depth profiling of thin films. Using a trehalose film as a model system, we are able to define optimal DRI conditions for depth profiling. Next, the strategy is applied to a multilayer system consisting of the polymer antioxidants Irganox 1098 and 1010. These binary mixtures have demonstrated large matrix effects, making quantitative SIMS measurement not feasible. Systematic comparisons of depth profiling of this multilayer film between directly using GCIB, and under DRI conditions, show that the latter enhances protonated ions for both components by 4- to 15-fold, resulting in uniform depth profiling in positive ion mode and almost no matrix effect in negative ion mode. The methodology offers a new strategy to tackle the matrix effect and should lead to improved quantitative measurement using SIMS.

  7. Real-time inverse kinematics and inverse dynamics for lower limb applications using OpenSim.

    Science.gov (United States)

    Pizzolato, C; Reggiani, M; Modenese, L; Lloyd, D G

    2017-03-01

    Real-time estimation of joint angles and moments can be used for rapid evaluation in clinical, sport, and rehabilitation contexts. However, real-time calculation of kinematics and kinetics is currently based on approximate solutions or generic anatomical models. We present a real-time system based on OpenSim solving inverse kinematics and dynamics without simplifications at 2000 frame per seconds with less than 31.5 ms of delay. We describe the software architecture, sensitivity analyses to minimise delays and errors, and compare offline and real-time results. This system has the potential to strongly impact current rehabilitation practices enabling the use of personalised musculoskeletal models in real-time.

  8. SIM-DSP: A DSP-Enhanced CAD Platform for Signal Integrity Macromodeling and Simulation

    Directory of Open Access Journals (Sweden)

    Chi-Un Lei

    2014-12-01

    Full Text Available Macromodeling-Simulation process for signal integrity verifications has become necessary for the high speed circuit system design. This paper aims to introduce a “VLSI Signal Integrity Macromodeling and Simulation via Digital Signal Processing Techniques” framework (known as SIM-DSP framework, which applies digital signal processing techniques to facilitate the SI verification process in the pre-layout design phase. Core identification modules and peripheral (pre-/post-processing modules have been developed and assembled to form a verification flow. In particular, a single-step discrete cosine transform truncation (DCTT module has been developed for modeling-simulation process. In DCTT, the response modeling problem is classified as a signal compression problem, wherein the system response can be represented by a truncated set of non-pole based DCT bases, and error can be analyzed through Parseval’s theorem. Practical examples are given to show the applicability of our proposed framework.

  9. Assessing the potential of ToF-SIMS as a complementary approach to investigate cement-based materials — Applications related to alkali–silica reaction

    Energy Technology Data Exchange (ETDEWEB)

    Bernard, Laetitia, E-mail: laetitia.bernard@empa.ch [Laboratory for Nanoscale Materials Science, Empa, Swiss Federal Laboratories for Material Science and Technology, Ueberlandstr. 129, 8600 Duebendorf (Switzerland); Leemann, Andreas [Laboratory for Concrete/Construction Chemistry, Empa, Swiss Federal Laboratories for Material Science and Technology, Ueberlandstr. 129, 8600 Duebendorf (Switzerland)

    2015-02-15

    In this study, the potential of time-of-flight secondary ion mass spectrometry (ToF-SIMS) for the application in cement-based materials is assessed in combination and comparison with scanning electron microscopy (SEM) and energy dispersive X-ray (EDX). Mortar, concrete and samples from model systems providing products formed by the alkali–silica reaction (ASR) were studied. ToF-SIMS provides qualitative data on alkalis in cases where EDX reaches its limits in regard to detectable concentration, lateral resolution and atomic number of the elements. Due to its high in-depth resolution of a few atomic monolayers, thin layers of reaction products can be detected on the surfaces and chemically analyzed with ToF-SIMS. Additionally, it delivers information on the molecular conformation within the ASR product, its hydrogen content and its isotope ratios, information not provided by EDX. Provided the samples are carefully prepared, ToF-SIMS opens up new possibilities in the analysis of cement-based materials.

  10. Modeling Sustainable Food Systems

    Science.gov (United States)

    Allen, Thomas; Prosperi, Paolo

    2016-05-01

    The processes underlying environmental, economic, and social unsustainability derive in part from the food system. Building sustainable food systems has become a predominating endeavor aiming to redirect our food systems and policies towards better-adjusted goals and improved societal welfare. Food systems are complex social-ecological systems involving multiple interactions between human and natural components. Policy needs to encourage public perception of humanity and nature as interdependent and interacting. The systemic nature of these interdependencies and interactions calls for systems approaches and integrated assessment tools. Identifying and modeling the intrinsic properties of the food system that will ensure its essential outcomes are maintained or enhanced over time and across generations, will help organizations and governmental institutions to track progress towards sustainability, and set policies that encourage positive transformations. This paper proposes a conceptual model that articulates crucial vulnerability and resilience factors to global environmental and socio-economic changes, postulating specific food and nutrition security issues as priority outcomes of food systems. By acknowledging the systemic nature of sustainability, this approach allows consideration of causal factor dynamics. In a stepwise approach, a logical application is schematized for three Mediterranean countries, namely Spain, France, and Italy.

  11. Exploration and Practice of Course Experimental Teaching of Network System Integration Based on RouterSim2.1 Simulator%基于RouterSim2.1模拟器的网络系统集成实验探索与实践

    Institute of Scientific and Technical Information of China (English)

    张梁斌; 梁世斌

    2006-01-01

    针对网络系统集成的实验设备投入资金多、组织难度大等难题,结合Cisco的技术认证CCNA,本文尝试用RouterSim2.1模拟器应用到网络系统集成的实验教学中,并精心设计了相应的实验项目和内容.实践表明,该方法既节省了网络设备资金的投入,又大大提高了学生对网络硬件设备的配置和集成能力.

  12. SIMS: Single Interface to Multiple Systems.

    Science.gov (United States)

    1988-02-01

    on the interface design [ CARL 79]. The separation advantage works in the other direction as well. If the interface needs to be changed (e.g...Execution Monitoring. Proceedings of the Sixth National Conference on Artificial Intelligence, pages 190-195, (1987). [ CARL 79] E. Carlson and W. Metz. A...4, (1987). [NEBE 87] Bernhard Nebel . Computational Complexity of Terminological Reasoning in BACK. S Technical Report Number 43, Technische

  13. SimFlu: a simulation tool for predicting the variation pattern of influenza A virus.

    Science.gov (United States)

    Ahn, Insung; Kim, Ha-Yeon; Jung, Sunghoon; Lee, Ji-Hae; Son, Hyeon Seok

    2014-09-01

    Since the first pandemic outbreak of avian influenza A virus (H5N1 subtype) in 1997, the National Center for Biotechnology Information (NCBI) has provided a large number of influenza virus sequences with well-organized annotations. Using the time-series sequences of influenza A viruses, we developed a simulation tool for influenza virus, named SimFlu, to predict possible future variants of influenza viruses. SimFlu can create variants from a seed nucleotide sequence of influenza A virus using the codon variation parameters included in the SimFlu package. The SimFlu library provides pre-calculated codon variation parameters for the H1N1, H3N2, and H5N1 subtypes of influenza A virus isolated from 2000 to 2011, allowing the users to simulate their own nucleotide sequences by selecting their preferred parameter options. SimFlu supports three operating systems - Windows, Linux, and Mac OS X. SimFlu is publicly available at http://lcbb.snu.ac.kr/simflu. Copyright © 2014 The Authors. Published by Elsevier Ltd.. All rights reserved.

  14. The sim operon facilitates the transport and metabolism of sucrose isomers in Lactobacillus casei ATCC 334.

    Science.gov (United States)

    Thompson, John; Jakubovics, Nicholas; Abraham, Bindu; Hess, Sonja; Pikis, Andreas

    2008-05-01

    Inspection of the genome sequence of Lactobacillus casei ATCC 334 revealed two operons that might dissimilate the five isomers of sucrose. To test this hypothesis, cells of L. casei ATCC 334 were grown in a defined medium supplemented with various sugars, including each of the five isomeric disaccharides. Extracts prepared from cells grown on the sucrose isomers contained high levels of two polypeptides with M(r)s of approximately 50,000 and approximately 17,500. Neither protein was present in cells grown on glucose, maltose or sucrose. Proteomic, enzymatic, and Western blot analyses identified the approximately 50-kDa protein as an NAD(+)- and metal ion-dependent phospho-alpha-glucosidase. The oligomeric enzyme was purified, and a catalytic mechanism is proposed. The smaller polypeptide represented an EIIA component of the phosphoenolpyruvate-dependent sugar phosphotransferase system. Phospho-alpha-glucosidase and EIIA are encoded by genes at the LSEI_0369 (simA) and LSEI_0374 (simF) loci, respectively, in a block of seven genes comprising the sucrose isomer metabolism (sim) operon. Northern blot analyses provided evidence that three mRNA transcripts were up-regulated during logarithmic growth of L. casei ATCC 334 on sucrose isomers. Internal simA and simF gene probes hybridized to approximately 1.5- and approximately 1.3-kb transcripts, respectively. A 6.8-kb mRNA transcript was detected by both probes, which was indicative of cotranscription of the entire sim operon.

  15. Modeling Complex Systems

    CERN Document Server

    Boccara, Nino

    2010-01-01

    Modeling Complex Systems, 2nd Edition, explores the process of modeling complex systems, providing examples from such diverse fields as ecology, epidemiology, sociology, seismology, and economics. It illustrates how models of complex systems are built and provides indispensable mathematical tools for studying their dynamics. This vital introductory text is useful for advanced undergraduate students in various scientific disciplines, and serves as an important reference book for graduate students and young researchers. This enhanced second edition includes: . -recent research results and bibliographic references -extra footnotes which provide biographical information on cited scientists who have made significant contributions to the field -new and improved worked-out examples to aid a student’s comprehension of the content -exercises to challenge the reader and complement the material Nino Boccara is also the author of Essentials of Mathematica: With Applications to Mathematics and Physics (Springer, 2007).

  16. StandsSIM-MD: a Management Driven forest SIMulator

    Energy Technology Data Exchange (ETDEWEB)

    Barreiro, S.; Rua, J.; Tomé, M.

    2016-07-01

    Aim of the study. The existing stand level forest simulators available in Portugal were not developed with the aim of including up-to-date model versions and were limited in terms of accounting for forest management. The simulators’ platform, sIMfLOR was recently created to implement different growth models with a common philosophy. The objective was developing one easily-updatable, user-friendly, forest management and climate change sensitive simulator capable of projecting growth for the main tree species in Portugal. Area of the study: Portugal. Material and methods: The new simulator was programmed in a modular form consisting of several modules. The growth module integrates different forest growth and yield models (empirical and process-based) for the main wood production tree species in Portugal (eucalypt, umbrella and maritime pines); whereas the management module drives the growth projections along the planning horizon according to a range of forest management approaches and climate (at present only available for eucalypt). Main results: The main result is the StandsSIM-MD Management Driven simulator that overcomes the limitations of the existing stand level simulators. It is a step forward when compared to the models currently available in the sIMfLOR platform covering more tree species, stand structures and stand compositions. It is focused on end-users and it is based on similar concepts regarding the generation of required inputs and generated outputs. Research highlights: Forest Management Driven simulations approach. Multiple Prescriptions-Per-Stand functionality. StandsSIM-MD can be used to support landowners decisions on stand forest management. StandsSIM-MD simulations at regional level can be combined with optimization routines. (Author)

  17. Distributed generation systems model

    Energy Technology Data Exchange (ETDEWEB)

    Barklund, C.R.

    1994-12-31

    A slide presentation is given on a distributed generation systems model developed at the Idaho National Engineering Laboratory, and its application to a situation within the Idaho Power Company`s service territory. The objectives of the work were to develop a screening model for distributed generation alternatives, to develop a better understanding of distributed generation as a utility resource, and to further INEL`s understanding of utility concerns in implementing technological change.

  18. Modeling the earth system

    Energy Technology Data Exchange (ETDEWEB)

    Ojima, D. [ed.

    1992-12-31

    The 1990 Global Change Institute (GCI) on Earth System Modeling is the third of a series organized by the Office for Interdisciplinary Earth Studies to look in depth at particular issues critical to developing a better understanding of the earth system. The 1990 GCI on Earth System Modeling was organized around three themes: defining critical gaps in the knowledge of the earth system, developing simplified working models, and validating comprehensive system models. This book is divided into three sections that reflect these themes. Each section begins with a set of background papers offering a brief tutorial on the subject, followed by working group reports developed during the institute. These reports summarize the joint ideas and recommendations of the participants and bring to bear the interdisciplinary perspective that imbued the institute. Since the conclusion of the 1990 Global Change Institute, research programs, nationally and internationally, have moved forward to implement a number of the recommendations made at the institute, and many of the participants have maintained collegial interactions to develop research projects addressing the needs identified during the two weeks in Snowmass.

  19. The simplest model for non-congruent fluid-fluid phase transition in Coulomb system

    CERN Document Server

    Stroev, Nikita

    2015-01-01

    The simplest model for non-congruent phase transition of gas-liquid type was developed in frames of modified model with no associations of a binary ionic mixture (BIM) on a homogeneous compressible ideal background (or non-ideal) electron gas /BIM($\\sim$)/. The analytical approximation for equation of state equation of state of Potekhin and Chabrier of fully ionized electron-ionic plasma was used for description of the ion-ion correlations (Coulomb non-ideality) in combination with ``linear mixture'' (LM) approximation. Phase equilibrium for the charged species was calculated according to the Gibbs-Guggenheim conditions. The presently considered BIM($\\sim$) model allows to calculate full set of parameters for phase boundaries of non-congruent variant of phase equilibrium and to study all features for this non-congruent phase transition realization in Coulomb system in comparison with the simpler (standard) forced-congruent evaporation mode. In particular, in BIM($\\sim$) there were reproduced two-dimensional r...

  20. Analysis of volatile nanoparticles emitted from diesel engine using TOF-SIMS and metal-assisted SIMS (MetA-SIMS)

    Science.gov (United States)

    Inoue, Masae; Murase, Atsushi; Yamamoto, Masami; Kubo, Shuichi

    2006-07-01

    Time-of-flight secondary ion mass spectrometry (TOF-SIMS) and metal-assisted SIMS (MetA-SIMS), which is TOF-SIMS analysis of metal-deposited sample surfaces, were applied to analyze small quantities of volatile nanoparticles emitted from a light-duty diesel engine under idling and deceleration conditions. We investigated nucleation materials, i.e., >C35 hydrocarbons, oxidation products, etc., which have lower volatility than the main components of volatile nanoparticles and control the formation of volatile nanoparticles. Oxygenated hydrocarbons were detected by TOF-SIMS in volatile nanoparticles under idling condition. Their relative intensities increased as particle diameter decreased. This resulted in the oxygenated hydrocarbons acting as nucleation materials for volatile nanoparticles under idling condition. High-molecular-weight hydrocarbons of greater than C35 were detected in volatile nanoparticles under deceleration condition by MetA-SIMS. It was concluded that the detected hydrocarbons originated in lubricants and acted as nucleation materials for volatile nanoparticles under deceleration condition. TOF-SIMS makes it possible to detect traces of low-volatility molecules due to its high-vacuum environment. MetA-SIMS is the only method of directly detecting high-molecular-weight hydrocarbons in small quantities of nanoparticles. TOF-SIMS and MetA-SIMS were proved to be useful tools for analyzing of the properties of volatile nanoparticles.

  1. Multivariate analysis of TOF-SIMS spectra from self-assembled monolayers

    Science.gov (United States)

    Graham, Daniel Jay

    Recently the concept of engineered biomaterial surfaces has started a revolution in the biomaterials community. These biomaterial surfaces are designed using knowledge from cell biology to produce a healing response that will integrate the biomaterials into the body. These surfaces will require specific, complex chemistries that will elicit the desired responses. Such complex surfaces will require an equally detailed surface characterization method. Due to its molecular specificity and high sensitivity, TOF-SIMS appears to be an ideal method for this challenge. Nevertheless TOF-SIMS spectra are complex and difficult to interpret. This complexity results from the shear number of peaks within the spectra, the inter-related nature of the peaks, and lack of fundamental understanding of TOF-SIMS fragmentation mechanisms. This work approaches addressing these problems through use of multivariate analysis. Multivariate analysis enables detailed spectral interpretation and provides insight into fragmentation mechanisms by extracting the salient information from within the complex spectral data set. Multivariate spectral interpretation was explored using a series of self-assembled monolayers that varied in surface order, surface functionality, formation method, and chain length. A multivariate SAM ratio was developed that correlates with thermodynamic properties of the surface. This ratio is the first to demonstrate a direct relationship between TOF-SIMS data and surface thermodynamic parameters. A model for TOF-SIMS fragmentation of SAMs was created and explored using multivariate analysis of a thiol containing a hydroxyl end group. This model explains the emission of fragments from the surface over a time course experiment. This is the first use of multivariate analysis with TOF-SIMS data to provide mechanistic information about the TOF-SIMS process. This methodology provides a technique for studying TOF-SIMS fragmentation using actual data without the need for molecular

  2. StandsSIM-MD: a Management Driven forest SIMulator

    Directory of Open Access Journals (Sweden)

    Susana Barreiro

    2016-07-01

    Full Text Available Aim of the study: The existing stand level forest simulators available in Portugal were not developed with the aim of including up-to-date model versions and were limited in terms of accounting for forest management. The simulators’ platform, sIMfLOR was recently created to implement different growth models with a common philosophy. The objective was developing one easily-updatable, user-friendly, forest management and climate change sensitive simulator capable of projecting growth for the main tree species in Portugal. Area of the study: Portugal. Material and methods: The new simulator was programmed in a modular form consisting of several modules. The growth module integrates different forest growth and yield models (empirical and process-based for the main wood production tree species in Portugal (eucalypt, umbrella and maritime pines; whereas the management module drives the growth projections along the planning horizon according to a range of forest management approaches and climate (at present only available for eucalypt. Main results: The main result is the StandsSIM-MD Management Driven simulator that overcomes the limitations of the existing stand level simulators. It is a step forward when compared to the models currently available in the sIMfLOR platform covering more tree species, stand structures and stand compositions. It is focused on end-users and it is based on similar concepts regarding the generation of required inputs and generated outputs. Research highlights: -          Forest Management Driven simulations approach -          Multiple Prescriptions-Per-Stand functionality -          StandsSIM-MD can be used to support landowners decisions on stand forest management -          StandsSIM-MD simulations at regional level can be combined with optimization routines Keywords: Forest simulator, Forest Management Approaches; StandsSIM-MD; forest management.

  3. Efficient simulation of voxelized phantom in GATE with embedded SimSET multiple photon history generator

    Science.gov (United States)

    Lin, Hsin-Hon; Chuang, Keh-Shih; Lin, Yi-Hsing; Ni, Yu-Ching; Wu, Jay; Jan, Meei-Ling

    2014-10-01

    GEANT4 Application for Tomographic Emission (GATE) is a powerful Monte Carlo simulator that combines the advantages of the general-purpose GEANT4 simulation code and the specific software tool implementations dedicated to emission tomography. However, the detailed physical modelling of GEANT4 is highly computationally demanding, especially when tracking particles through voxelized phantoms. To circumvent the relatively slow simulation of voxelized phantoms in GATE, another efficient Monte Carlo code can be used to simulate photon interactions and transport inside a voxelized phantom. The simulation system for emission tomography (SimSET), a dedicated Monte Carlo code for PET/SPECT systems, is well-known for its efficiency in simulation of voxel-based objects. An efficient Monte Carlo workflow integrating GATE and SimSET for simulating pinhole SPECT has been proposed to improve voxelized phantom simulation. Although the workflow achieves a desirable increase in speed, it sacrifices the ability to simulate decaying radioactive sources such as non-pure positron emitters or multiple emission isotopes with complex decay schemes and lacks the modelling of time-dependent processes due to the inherent limitations of the SimSET photon history generator (PHG). Moreover, a large volume of disk storage is needed to store the huge temporal photon history file produced by SimSET that must be transported to GATE. In this work, we developed a multiple photon emission history generator (MPHG) based on SimSET/PHG to support a majority of the medically important positron emitters. We incorporated the new generator codes inside GATE to improve the simulation efficiency of voxelized phantoms in GATE, while eliminating the need for the temporal photon history file. The validation of this new code based on a MicroPET R4 system was conducted for 124I and 18F with mouse-like and rat-like phantoms. Comparison of GATE/MPHG with GATE/GEANT4 indicated there is a slight difference in energy

  4. Mechanical Systems, Classical Models

    CERN Document Server

    Teodorescu, Petre P

    2009-01-01

    This third volume completes the Work Mechanical Systems, Classical Models. The first two volumes dealt with particle dynamics and with discrete and continuous mechanical systems. The present volume studies analytical mechanics. Topics like Lagrangian and Hamiltonian mechanics, the Hamilton-Jacobi method, and a study of systems with separate variables are thoroughly discussed. Also included are variational principles and canonical transformations, integral invariants and exterior differential calculus, and particular attention is given to non-holonomic mechanical systems. The author explains in detail all important aspects of the science of mechanics, regarded as a natural science, and shows how they are useful in understanding important natural phenomena and solving problems of interest in applied and engineering sciences. Professor Teodorescu has spent more than fifty years as a Professor of Mechanics at the University of Bucharest and this book relies on the extensive literature on the subject as well as th...

  5. SimAlba: a Spatial Microsimulation approach to the analysis of health inequalities

    Directory of Open Access Journals (Sweden)

    Malcolm Campbell

    2016-10-01

    Full Text Available This paper presents applied geographical research based on a Spatial Microsimulation model, SimAlba aimed at estimating geographically sensitive health variables in Scotland. SimAlba has been developed in order to answer a variety of 'what-if' policy questions pertaining to health policy in Scotland. Using the SimAlba model, it is possible to simulate the distributions of previously unknown variables at the small area level such as; smoking, alcohol consumption, mental well-being and obesity. The SimAlba microdataset has been created by combining Scottish Health Survey (SHS and Census data using a deterministic reweighting Spatial Microsimulation algorithm developed for this purpose. The paper presents SimAlba outputs for Scotland’s largest city, Glasgow and examines the spatial distribution of the simulated variables for small geographical areas in Glasgow as well as the effects on individuals of different policy scenario outcomes. In simulating previously unknown spatial data a wealth of new perspectives can be examined and explored. This paper explores a small set of those potential avenues of research and shows the power of spatial microsimulation modelling in an urban context.

  6. SimAlba: A Spatial Microsimulation Approach to the Analysis of Health Inequalities.

    Science.gov (United States)

    Campbell, Malcolm; Ballas, Dimitris

    2016-01-01

    This paper presents applied geographical research based on a spatial microsimulation model, SimAlba, aimed at estimating geographically sensitive health variables in Scotland. SimAlba has been developed in order to answer a variety of "what-if" policy questions pertaining to health policy in Scotland. Using the SimAlba model, it is possible to simulate the distributions of previously unknown variables at the small area level such as smoking, alcohol consumption, mental well-being, and obesity. The SimAlba microdataset has been created by combining Scottish Health Survey and Census data using a deterministic reweighting spatial microsimulation algorithm developed for this purpose. The paper presents SimAlba outputs for Scotland's largest city, Glasgow, and examines the spatial distribution of the simulated variables for small geographical areas in Glasgow as well as the effects on individuals of different policy scenario outcomes. In simulating previously unknown spatial data, a wealth of new perspectives can be examined and explored. This paper explores a small set of those potential avenues of research and shows the power of spatial microsimulation modeling in an urban context.

  7. NEP systems model

    Science.gov (United States)

    George, Jeffrey A.

    A new nuclear electric propulsion (NEP) systems analysis code is discussed. The new code is modular and consists of a driver code and various subsystem models. The code models five different subsystems: (1) reactor/shield; (2) power conversion; (3) heat rejection; (4) power management and distribution (PMAD); and (5) thrusters. The code optimizes for the following design criteria: minimum mass; minimum radiator area; and low mass/low area. The code also optimizes the following parameters: separation distance; temperature ratio; pressure ratio; and transmission frequency. The discussion is presented in vugraph form.

  8. Cannabinoid type 1 (CB1) receptors on Sim1-expressing neurons regulate energy expenditure in male mice.

    Science.gov (United States)

    Cardinal, Pierre; Bellocchio, Luigi; Guzmán-Quevedo, Omar; André, Caroline; Clark, Samantha; Elie, Melissa; Leste-Lasserre, Thierry; Gonzales, Delphine; Cannich, Astrid; Marsicano, Giovanni; Cota, Daniela

    2015-02-01

    The paraventricular nucleus of the hypothalamus (PVN) regulates energy balance by modulating not only food intake, but also energy expenditure (EE) and brown adipose tissue thermogenesis. To test the hypothesis that cannabinoid type 1 (CB1) receptor in PVN neurons might control these processes, we used the Cre/loxP system to delete CB1 from single-minded 1 (Sim1) neurons, which account for the majority of PVN neurons. On standard chow, mice lacking CB1 receptor in Sim1 neurons (Sim1-CB1-knockout [KO]) had food intake, body weight, adiposity, glucose metabolism, and EE comparable with wild-type (WT) (Sim1-CB1-WT) littermates. However, maintenance on a high-fat diet revealed a gene-by-diet interaction whereby Sim1-CB1-KO mice had decreased adiposity, improved insulin sensitivity, and increased EE, whereas feeding behavior was similar to Sim1-CB1-WT mice. Additionally, high-fat diet-fed Sim1-CB1-KO mice had increased mRNA expression of the β3-adrenergic receptor, as well as of uncoupling protein-1, cytochrome-c oxidase subunit IV and mitochondrial transcription factor A in the brown adipose tissue, all molecular changes suggestive of increased thermogenesis. Pharmacological studies using β-blockers suggested that modulation of β-adrenergic transmission play an important role in determining EE changes observed in Sim1-CB1-KO. Finally, chemical sympathectomy abolished the obesity-resistant phenotype of Sim1-CB1-KO mice. Altogether, these findings reveal a diet-dependent dissociation in the CB1 receptor control of food intake and EE, likely mediated by the PVN, where CB1 receptors on Sim1-positive neurons do not impact food intake but hinder EE during dietary environmental challenges that promote body weight gain.

  9. The very wide-field $gzK$ galaxy survey -- II. The relationship between star-forming galaxies at $z \\sim 2$ and their host haloes based upon HOD modelling

    CERN Document Server

    Ishikawa, Shogo; Hamana, Takashi; Toshikawa, Jun; Onoue, Masafusa

    2016-01-01

    We present the results of an halo occupation distribution (HOD) analysis of star-forming galaxies at $z \\sim 2$. We obtained high-quality angular correlation functions based on a large sgzK sample, which enabled us to carry out the HOD analysis. The mean halo mass and the HOD mass parameters are found to increase monotonically with increasing $K$-band magnitude, suggesting that more luminous galaxies reside in more massive dark haloes. The luminosity dependence of the HOD mass parameters was found to be the same as in the local Universe; however, the masses were larger than in the local Universe over all ranges of magnitude. This implies that galaxies at $z \\sim 2$ tend to form in more massive dark haloes than in the local Universe, a process known as downsizing. By analysing the dark halo mass evolution using the extended Press--Schechter formalism and the number evolution of satellite galaxies in a dark halo, we find that faint Lyman break galaxies at $z \\sim 4$ could evolve into the faintest sgzKs $(22.0 &...

  10. SIMS analysis: Development and evaluation program summary

    Energy Technology Data Exchange (ETDEWEB)

    Groenewold, G.S.; Appelhans, A.D.; Ingram, J.C.; Delmore, J.E.; Dahl, D.A.

    1996-11-01

    This report provides an overview of the ``SIMS Analysis: Development and Evaluation Program``, which was executed at the Idaho National Engineering Laboratory from mid-FY-92 to the end of FY-96. It should be noted that prior to FY-1994 the name of the program was ``In-Situ SIMS Analysis``. This report will not go into exhaustive detail regarding program accomplishments, because this information is contained in annual reports which are referenced herein. In summary, the program resulted in the design and construction of an ion trap secondary ion mass spectrometer (IT-SIMS), which is capable of the rapid analysis of environmental samples for adsorbed surface contaminants. This instrument achieves efficient secondary ion desorption by use of a molecular, massive ReO{sub 4}{sup {minus}} primary ion particle. The instrument manages surface charge buildup using a self-discharging principle, which is compatible with the pulsed nature of the ion trap. The instrument can achieve high selectivity and sensitivity using its selective ion storage and MS/MS capability. The instrument was used for detection of tri-n-butyl phosphate, salt cake (tank cake) characterization, and toxic metal speciation studies (specifically mercury). Technology transfer was also an important component of this program. The approach that was taken toward technology transfer was that of component transfer. This resulted in transfer of data acquisition and instrument control software in FY-94, and ongoing efforts to transfer primary ion gun and detector technology to other manufacturers.

  11. [Cerebral paragonimiasis and Bo Sung Sim's hemispherectomy in Korea in 1950s-1960s].

    Science.gov (United States)

    Park, Jiyoung; Miyagawa, Takuya; Hong, Jeonghwa; Kim, Ockjoo

    2011-06-30

    This paper deals with cerebral paragonimiasis and cerebral hemispherectomy conducted as a treatment of cerebral paragonimiasis by Bo Sung Sim in Korea in 1950s-1960s. He demonstrated that cerebral hemispherectomy could be used for unilateral diffuse cerebral paragonimiasis. Sim learned cerebral hemispherectomy from Dr. L. A. French. at the University of Minnesota from 1955 to 1957 in America. The authors argues that Bo Sung Sim's introduction of cerebral hemispherectomy to Korea was not a simple application of an advanced medical technology, but a complicated and active process in that Sim used the technique to intervene intractable complications from cerebral paragonimiasis such as generalized convulsions, spastic hemiplegia and mental deterioration. Bo Sung Sim, one of the neurosurgeons of the first generation in Korea, was trained in neurology, neuropathology, neuroradiology and animal experiments as well as in neurosurgery at the University of Minnesota. After returning to Korea, Sim faced parasitic diseases, one of the most serious public health problems at that time, which were far different from what he learned in America. As a neurosurgeon, Sim tackled with parasitic diseases of the central nervous system with various diagnostics and therapeutics. In 1950s, more than one million populations suffered from pulmonary paragonimiasis acquired by eating raw crabs or by feeding juice of crushed crayfish for the treatment of measles in Korea. About 26.6 percent of people with paragonimiasis had cerebral paragonimiasis. Before bithionol therapy was introduced in 1962, neurosurgery was the only available treatment to control increased intracranial pressures, intractable epilepsy, paralysis and mental deterioration. Between 1958 to 1962, Bo Sung Sim operated on 24 patients of cerebral paragonimiasis. In two of them, he performed cerebral hemispherectomy to control intractable convulsions when he found diffuse cerebral paragonimiasis and cerebral atrophy at the

  12. National Energy Modeling System

    Energy Technology Data Exchange (ETDEWEB)

    Skinner, C.W. (Energy Information Administration, Washington, DC (United States))

    1993-01-01

    The Energy Information Administration is developing a new National Energy Modeling System to provide annual forecasts of energy supply, demand, and prices on a regional basis in the United States and, to a limited extent, in the rest of the world. The design for the system was based on a requirements analysis, a comparison of requirements with existing modeling capabilities, and a series of widely circulated issue papers defining the choices and tradeoffs for 13 key design decisions. An initial prototpye of the new NEMS was implemented in late 1992, with a more complete, operational version in 1993. NEMS is expected to provide EIA and other users with a greatly enhanced ability to illustrate quickly and effectively the effects of a wide range of energy policy proposals.

  13. Modeling Novo Nordisk Production Systems

    DEFF Research Database (Denmark)

    Miller, Thomas Dedenroth

    1997-01-01

    This report describes attributes of models and systems, and how models can be used for description of production systems. There are special attention on the 'Theory of Domains'.......This report describes attributes of models and systems, and how models can be used for description of production systems. There are special attention on the 'Theory of Domains'....

  14. A 3-D wellbore simulator (WELLTHER-SIM) to determine the thermal diffusivity of rock-formations

    Science.gov (United States)

    Wong-Loya, J. A.; Santoyo, E.; Andaverde, J.

    2017-06-01

    Acquiring thermophysical properties of rock-formations in geothermal systems is an essential task required for the well drilling and completion. Wellbore thermal simulators require such properties for predicting the thermal behavior of a wellbore and the formation under drilling and shut-in conditions. The estimation of static formation temperatures also needs the use of these properties for the wellbore and formation materials (drilling fluids and pipes, cements, casings, and rocks). A numerical simulator (WELLTHER-SIM) has been developed for modeling the drilling fluid circulation and shut-in processes of geothermal wellbores, and for the in-situ determination of thermal diffusivities of rocks. Bottomhole temperatures logged under shut-in conditions (BHTm), and thermophysical and transport properties of drilling fluids were used as main input data. To model the thermal disturbance and recovery processes in the wellbore and rock-formation, initial drilling fluid and static formation temperatures were used as initial and boundary conditions. WELLTHER-SIM uses these temperatures together with an initial thermal diffusivity for the rock-formation to solve the governing equations of the heat transfer model. WELLTHER-SIM was programmed using the finite volume technique to solve the heat conduction equations under 3-D and transient conditions. Thermal diffusivities of rock-formations were inversely computed by using an iterative and efficient numerical simulation, where simulated thermal recovery data sets (BHTs) were statistically compared with those temperature measurements (BHTm) logged in some geothermal wellbores. The simulator was validated using a well-documented case reported in the literature, where the thermophysical properties of the rock-formation are known with accuracy. The new numerical simulator has been successfully applied to two wellbores drilled in geothermal fields of Japan and Mexico. Details of the physical conceptual model, the numerical

  15. CulSim: A simulator of emergence and resilience of cultural diversity

    Science.gov (United States)

    Ulloa, Roberto

    CulSim is an agent-based computer simulation software that allows further exploration of influential and recent models of emergence of cultural groups grounded in sociological theories. CulSim provides a collection of tools to analyze resilience of cultural diversity when events affect agents, institutions or global parameters of the simulations; upon combination, events can be used to approximate historical circumstances. The software provides a graphical and text-based user interface, and so makes this agent-based modeling methodology accessible to a variety of users from different research fields.

  16. System of systems modeling and analysis.

    Energy Technology Data Exchange (ETDEWEB)

    Campbell, James E.; Anderson, Dennis James; Longsine, Dennis E. (Intera, Inc., Austin, TX); Shirah, Donald N.

    2005-01-01

    This report documents the results of an LDRD program entitled 'System of Systems Modeling and Analysis' that was conducted during FY 2003 and FY 2004. Systems that themselves consist of multiple systems (referred to here as System of Systems or SoS) introduce a level of complexity to systems performance analysis and optimization that is not readily addressable by existing capabilities. The objective of the 'System of Systems Modeling and Analysis' project was to develop an integrated modeling and simulation environment that addresses the complex SoS modeling and analysis needs. The approach to meeting this objective involved two key efforts. First, a static analysis approach, called state modeling, has been developed that is useful for analyzing the average performance of systems over defined use conditions. The state modeling capability supports analysis and optimization of multiple systems and multiple performance measures or measures of effectiveness. The second effort involves time simulation which represents every system in the simulation using an encapsulated state model (State Model Object or SMO). The time simulation can analyze any number of systems including cross-platform dependencies and a detailed treatment of the logistics required to support the systems in a defined mission.

  17. FabSim: facilitating computational research through automation on large-scale and distributed e-infrastructures

    CERN Document Server

    Groen, Derek; Suter, James; Hetherington, James; Zasada, Stefan; Coveney, Peter

    2015-01-01

    We present FabSim, a toolkit developed to simplify a range of computational tasks for researchers in diverse disciplines. FabSim is flexible, adaptable, and allows users to perform a wide range of tasks with ease. It also provides a systematic way to automate the use of resourcess, including HPC and distributed resources, and to make tasks easier to repeat by recording contextual information. To demonstrate this, we present three use cases where FabSim has enhanced our research productivity. These include simulating cerebrovascular bloodflow, modelling clay-polymer nanocomposites across multiple scales, and calculating ligand-protein binding affinities.

  18. Implementation of DSP Based Cost Effective Inverter Fed Induction Motor Drive with VisSim

    Science.gov (United States)

    Mohanty, Nalin K.; Muthu, Ranganath

    2012-03-01

    The implementation of a Digital Signal Processor (DSP) based high-performance cost effective fed Induction Motor drive with VisSim/Embedded Controls Developer (ECD) is presented in this paper. In the experimental work VisSim/ECD software automatically converts the in built block diagram to C code and compiles, links, and downloads the code to DSP processor TMS320F2812. The DSP processor generates the required PWM to a cost effective ie four switch 3-phase (FSTPI) inverter. The power circuit of FSTPI fed drive system consists of an IGBT based FSTPI bridge inverter module feeding to a 5 hp three-phase squirrel cage induction motor. In this work the speed of induction motor output is shown by the GUI of VisSim/ECD and SPWM pulses, line voltages and line current output curves are shown using digital storage oscilloscope to demonstrate the feasibility of the system.

  19. SimSketch: multiagent simulations based on learner-created sketches for early science education

    NARCIS (Netherlands)

    Bollen, L.; Joolingen, van W.R.

    2013-01-01

    This paper presents an approach to create simulations of science phenomena based on sketches. SimSketch, an integrated drawing and modeling tool, allows students to create sketches and apply behaviors to elements of their drawing. A multiagent simulation engine interprets and executes the model, thu

  20. The core competencies of James Marion Sims, MD.

    Science.gov (United States)

    Straughn, J Michael; Gandy, Roy E; Rodning, Charles B

    2012-07-01

    The concept of core competencies in graduate medical education was introduced by the Accreditation Council for Graduate Medical Education of the American Medical Association to semiquantitatively assess the professional performance of students, residents, practitioners, and faculty. Many aspects of the career of J. Marion Sims, MD, are exemplary of those core competencies: MEDICAL KNOWLEDGE: Author of the first American textbook related to gynecology. MEDICAL CARE: Innovator of the Sims' Vaginal Speculum, Sims' Position, Sims' Test, and vesico-/rectovaginal fistulorrhaphy; advocated abdominal exploration for penetrating wounds; performed the first cholecystostomy. PROFESSIONALISM: Served as President of the New York Academy of Medicine, the American Medical Association, and the American Gynecologic Society. INTERPERSONAL RELATIONSHIPS/COMMUNICATION: Cared for the indigent, hearthless, indentured, disenfranchised; served as consulting surgeon to the Empress Eugénie (France), the Duchess of Hamilton (Scotland), the Empress of Austria, and other royalty of the aristocratic Houses of Europe; accorded the National Order of the Legion of Honor. PRACTICE-BASED LEARNING: Introduction of silver wire sutures; adoption of the principles of asepsis/antisepsis; adoption of the principles of general anesthesia. SYSTEMS-BASED PRACTICE: Established the Woman's Hospital, New York City, New York, the predecessor of the Memorial Sloan-Kettering Center for the Treatment of Cancer and Allied Diseases; organized the Anglo-American Ambulance Corps under the patronage of Napoleon III. What led him to a life of clinical and humanitarian service? First, he was determined to succeed. His formal medical/surgical education was perhaps the best available to North Americans during that era. Second, he was courageous in experimentation and innovation, applying new developments in operative technique, asepsis/antisepsis, and general anesthesia. Third, his curiosity was not burdened by rigid

  1. Development of a system emulating the global carbon cycle in Earth system models

    Directory of Open Access Journals (Sweden)

    K. Tachiiri

    2010-08-01

    Full Text Available Recent studies have indicated that the uncertainty in the global carbon cycle may have a significant impact on the climate. Since state of the art models are too computationally expensive for it to be possible to explore their parametric uncertainty in anything approaching a comprehensive fashion, we have developed a simplified system for investigating this problem. By combining the strong points of general circulation models (GCMs, which contain detailed and complex processes, and Earth system models of intermediate complexity (EMICs, which are quick and capable of large ensembles, we have developed a loosely coupled model (LCM which can represent the outputs of a GCM-based Earth system model, using much smaller computational resources. We address the problem of relatively poor representation of precipitation within our EMIC, which prevents us from directly coupling it to a vegetation model, by coupling it to a precomputed transient simulation using a full GCM. The LCM consists of three components: an EMIC (MIROC-lite which consists of a 2-D energy balance atmosphere coupled to a low resolution 3-D GCM ocean (COCO including an ocean carbon cycle (an NPZD-type marine ecosystem model; a state of the art vegetation model (Sim-CYCLE; and a database of daily temperature, precipitation, and other necessary climatic fields to drive Sim-CYCLE from a precomputed transient simulation from a state of the art AOGCM. The transient warming of the climate system is calculated from MIROC-lite, with the global temperature anomaly used to select the most appropriate annual climatic field from the pre-computed AOGCM simulation which, in this case, is a 1% pa increasing CO2 concentration scenario.

    By adjusting the effective climate sensitivity (equivalent to the equilibrium climate sensitivity for an energy balance model of MIROC-lite, the transient warming of the LCM could be adjusted to closely follow the low sensitivity (with an equilibrium

  2. Exploring the progenitors of brightest cluster galaxies at $z\\sim 2$

    CERN Document Server

    Zhao, Dongyao; Aragón-Salamanca, Alfonso; Almaini, Omar; Hartley, William G; Lani, Caterina; Mortlock, Alice; Old, Lyndsay

    2016-01-01

    We present a new method for tracing the evolution of BCGs from $z\\sim 2$ to $z\\sim 0$. We conclude on the basis of semi-analytical models that the best method to select BCG progenitors at $z\\sim 2$ is a hybrid environmental density and stellar mass ranking approach. Ultimately we are able to retrieve 45\\% of BCG progenitors. We apply this method on the CANDELS UDS data to construct a progenitor sample at high redshift. We furthermore populate the comparisons in local universe by using SDSS data with statistically likely contamination to ensure a fair comparison between high and low redshifts. Using these samples we demonstrate that the BCG sizes have grown by a factor of $\\sim 3.2$ since $z\\sim 2$, and BCG progenitors are mainly late-type galaxies, exhibiting less concentrated profiles than their early-type local counterparts. We find that BCG progenitors have more disturbed morphologies. In contrast, local BCGs have much smoother profiles. Moreover, we find that the stellar masses of BCGs have grown by a fac...

  3. Investigation of the cosmetic ingredient distribution in the stratum corneum using NanoSIMS imaging

    Energy Technology Data Exchange (ETDEWEB)

    Tanji, N. [Kao Corporation, 1334 Minato, Wakayama-shi, Wakayama, 640-8580 (Japan)], E-mail: tanji.noriyuki@kao.co.jp; Okamoto, M. [Kao Corporation, 1334 Minato, Wakayama-shi, Wakayama, 640-8580 (Japan); Katayama, Y.; Hosokawa, M. [Kao Corporation, 2-1-3 Bunka, Sumida-ku, Tokyo, 131-8501 (Japan); Takahata, N.; Sano, Y. [Ocean Research Institute, University of Tokyo, 1-15-1 Minamidai, Nakano-ku, Tokyo 164-8639 (Japan)

    2008-12-15

    In order to understand the mechanisms of action of cosmetic ingredients, it is important to establish the distribution of the component agents within the epidermis of the skin. To date, time-of-flight secondary ion mass spectrometry (TOF-SIMS) has been used to detect cosmetic ingredients in the skin. However, it is technically difficult to investigate the distribution of the agents in the stratum corneum using TOF-SIMS. Therefore, an analytical method with higher spatial resolution is required. In this study, we investigated an imaging analysis technique based on NanoSIMS to detect cosmetic ingredients in the skin. Pig skin was used as a model for human skin. The sample was treated with a cosmetic formulation containing {sup 15}N-labelled pseudo-ceramide (SLE). The sample was frozen with liquid nitrogen and cross-sections were cut using a cryomicrotome. As a result, the fine layer structure of the corneocytes was clearly observed by using NanoSIMS. Our studies indicate that SLE penetrates into the stratum corneum via an intercellular route. We conclude that application of NanoSIMS analysis can contribute to a better understanding of the function of cosmetic ingredients in the skin.

  4. MoTiV - Mobility and transport in intermodal traffic. Mobility in urban areas. 'SIM-simulation models'. Final report; Mobilitaet und Transport im intermodalen Verkehr (MoTiV). Mobilitaet im Ballungsraum. 'SIM-Simulationsmodell'. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Konhaeuser, P.

    2000-11-23

    Today, modelling and simulation of traffic flow is used for the design and investigation of new systems, in particular for driver assistance and especially for on-line applications for the reconstruction of traffic state. In the project existing software tools were improved, refined and adapted for special applications in the joined project MoTiV. An emphasis was the development, provision and application of robust techniques for the traffic state estimation at existing line control equipment, where measured traffic data have been used as input. A further emphasis was the development of a model for the traffic in urban areas and the application of this model for the design and optimisation of co-ordinated control of light signal units. In this application modern control techniques and also agent-based techniques were used. Significant results are the design of controllers for ACC systems, the sensor simulations for the project ASA (turning and lane changing assistance) and the methods of the model coupling for applications of the incident detection. A highlight was the on-line application of different methods and techniques for the reconstruction of speed and density profiles and the tools for the incident detection in the context of the COMPANION system which was installed at the German highway A92. For the final demonstration in Goettingen, single vehicle data were collected with help of induction loops at the test site A92. These data were transmitted to the demonstration site, where the processing and visualisation was conducted. To get a good visual impression about the traffic states and to compare the results, a transmission of video images was transmitted parallel to the traffic data. (orig.) [German] Die Modellierung und Simulation von Verkehrsablaeufen wird heute zur Auslegung und Untersuchung von neuen Systemen, insbesondere auch Fahrerassistenzsystemen und speziell fuer On-Line-Anwendungen zur Rekonstruktion von Verkehrszustaenden (Verkehrslagen

  5. Rim Sim: A Role-Play Simulation

    Science.gov (United States)

    Barrett, Robert C.; Frew, Suzanne L.; Howell, David G.; Karl, Herman A.; Rudin, Emily B.

    2003-01-01

    Rim Sim is a 6-hour, eight-party negotiation that focuses on creating a framework for the long-term disaster-recovery efforts. It involves a range of players from five countries affected by two natural disasters: a typhoon about a year ago and an earthquake about 6 months ago. The players are members of an International Disaster Working Group (IDWG) that has been created by an international commission. The IDWG has been charged with drawing up a framework for managing two issues: the reconstruction of regionally significant infrastructure and the design of a mechanism for allocating funding to each country for reconstruction of local infrastructure and ongoing humanitarian needs. The first issue will involve making choices among five options (two harbor options, two airport options, and one rail-line option), each of which will have three levels at which to rebuild. The second issue will involve five starting-point options. Participants are encouraged to invent other options for both issues. The goal of Rim Sim is to raise questions about traditional approaches to disaster-preparedness planning and reconstruction efforts in an international setting, in this case the Pacific Rim. Players must confront the reverberating effects of disasters and the problems of using science and technical information in decisionmaking, and are introduced to a consensus-building approach emphasizing face-to-face dialog and multinational cooperation in dealing with humanitarian concerns, as well as long-term efforts to reconstruct local and regional infrastructure. The Rim Sim simulation raises four key points: ripple effects of disasters, role of science, multiparty negotiation, and building personal relationships.

  6. Cluster SIMS and the Temperature Dependence of Molecular Depth Profiles

    Science.gov (United States)

    Mao, Dan; Wucher, Andreas; Brenes, Daniel A; Lu, Caiyan; Winograd, Nicholas

    2012-01-01

    The quality of molecular depth profiles created by erosion of organic materials by cluster ion beams exhibits a strong dependence upon temperature. To elucidate the fundamental nature of this dependence, we employ the Irganox 3114/1010 organic delta layer reference material as a model system. This delta-layer system is interrogated using a 40 keV C60+ primary ion beam. Parameters associated with the depth profile such as depth resolution, uniformity of sputtering yield and topography are evaluated between 90 K and 300 K using a unique wedge-crater beveling strategy that allows these parameters to be determined as a function of erosion depth from atomic force microscope measurements. The results show that the erosion rate calibration performed using the known Δ-layer depth in connection with the fluence needed to reach the peak of the corresponding SIMS signal response is misleading. Moreover, we show that the degradation of depth resolution is linked to a decrease of the average erosion rate and the buildup of surface topography in a thermally activated manner. This underlying process starts to influence the depth profile above a threshold temperature between 210 and 250 K for the system studied here. Below that threshold, the process is inhibited and steady-state conditions are reached with constant erosion rate, depth resolution and molecular secondary ion signals from both the matrix and the Δ-layers. In particular, the results indicate that further reduction of the temperature below 90 K does not lead to further improvement of the depth profile. Above the threshold, the process becomes stronger at higher temperature, leading to an immediate decrease of the molecular secondary ion signals. This signal decay is most pronounced for the highest m/z ions but is less for the smaller m/z ions, indicating a shift toward small fragments by accumulation of chemical damage. The erosion rate decay and surface roughness buildup, on the other hand, exhibit a rather sudden

  7. MetaSim: a sequencing simulator for genomics and metagenomics.

    Directory of Open Access Journals (Sweden)

    Daniel C Richter

    Full Text Available BACKGROUND: The new research field of metagenomics is providing exciting insights into various, previously unclassified ecological systems. Next-generation sequencing technologies are producing a rapid increase of environmental data in public databases. There is great need for specialized software solutions and statistical methods for dealing with complex metagenome data sets. METHODOLOGY/PRINCIPAL FINDINGS: To facilitate the development and improvement of metagenomic tools and the planning of metagenomic projects, we introduce a sequencing simulator called MetaSim. Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database of given genomes, the program allows the user to design a metagenome by specifying the number of genomes present at different levels of the NCBI taxonomy, and then to collect reads from the metagenome using a simulation of a number of different sequencing technologies. A population sampler optionally produces evolved sequences based on source genomes and a given evolutionary tree. CONCLUSIONS/SIGNIFICANCE: MetaSim allows the user to simulate individual read datasets that can be used as standardized test scenarios for planning sequencing projects or for benchmarking metagenomic software.

  8. Preliminary Verification and Validation of WEC-Sim, an Open-Source Wave Energy Converter Design Tool: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Ruehl, K.; Michelen, C.; Kanner, S.; Lawson, M.; Yu, Y. H.

    2014-03-01

    To promote and support the wave energy industry, a wave energy converter (WEC) design tool, WEC-Sim, is being developed by Sandia National Laboratories and the National Renewable Energy Laboratory. In this paper, the WEC-Sim code is used to model a point absorber WEC designed by the U.S. Department of Energy's reference model project. Preliminary verification was performed by comparing results of the WEC-Sim simulation through a code-to-code comparison, utilizing the commercial codes ANSYS-AQWA, WaveDyn, and OrcaFlex. A preliminary validation of the code was also performed by comparing WEC-Sim simulation results to experimental wave tank tests.

  9. Evaluation and improvement of sour property packages in UniSim design

    Energy Technology Data Exchange (ETDEWEB)

    Yang, J.; Zhao, E.; Wang, L.; Saha, S. [Honeywell, Calgary, AB (Canada)

    2010-07-01

    This presentation described specialty fluid packages for modeling oil and gas process systems involving sour gases in contact with aqueous phase. UniSim Design is a popular process simulation tool in the oil and gas industry. The sour Peng-Robinson (PR) and sour Soave-Redlich-Kwong (SRK) models are commonly used for handling sour system where hydrogen sulphide (H{sub 2}S), carbon dioxide (CO{sub 2}) or ammonia (NH{sub 3}) are in contact with an aqueous phase. These sour options combine the PR/SRK equation of state and Wilson's API-sour model where the equation of state is used to determine the fugacities of the vapor and liquid hydrocarbon phases, plus the enthalpy for all 3 phases. The Wilson's API-sour method is used for the aqueous phase calculations, which accounts for the ionization of H{sub 2}S, CO{sub 2} and NH{sub 3} in the aqueous phase. The efficiency of these 2 thermodynamic property packages were evaluated in this study by comparing industrial and experimental data and the results from other similar models. The purpose of this study was to improve these property packages for more accurate and reliable modeling of sour systems. tabs., figs.

  10. ROBO-SIM: a simulator for minimally invasive neurosurgery using an active manipulator.

    Science.gov (United States)

    Radetzky, A; Rudolph, M; Starkie, S; Davies, B; Auer, L M

    2000-01-01

    This application report describes the software system ROBO-SIM, which is a planning and simulation tool for minimally invasive neurosurgery. Using actual patient's datasets, ROBO-SIM includes all planning steps necessary. These are; defining the trepanation point for entry into the skull and the target point within the depth of the brain, checking the surgical track, performing virtual trepanations (virtual craniotomy), and defining sanctioned volumes for use with an intra-operative active manipulator. With the additional simulation part, neurosurgeons are able to simulate whole surgical interventions directly on the patient's anatomy using the same instruments as for the real operation. First tests with ROBO-SIM are performed on actual patient's datasets with ventricular tumours.

  11. Interest of silver and gold metallization for molecular SIMS and SIMS imaging

    Science.gov (United States)

    Delcorte, A.; Bertrand, P.

    2004-06-01

    The metallization procedure, recently proposed for signal improvement in organic secondary ion mass spectrometry (metal assisted-SIMS or MetA-SIMS), has been quantitatively evaluated for Irganox 1010 and polystyrene fragment and quasimolecular ions. In addition to gold, we investigate the effect of silver evaporation as a sample treatment prior to static SIMS analysis. Ion yields and yield enhancement factors are compared for Ag and Au-metallized molecular films, pristine coatings on silicon and sub-monolayers of the same molecules adsorbed on silver and gold. The results are sample-dependent but, as an example, the yield enhancement calculated for metallized polymer additive (Irganox 1010) films with respect to untreated coatings is larger than two orders of magnitude for the quasimolecular ion and a factor between 1 and 10 for characteristic fragments. The interest of the method for imaging SIMS applications is illustrated by the study of a non-uniform coating of polystyrene oligomers on a 100 μm polypropylene film.

  12. CoaSim Guile Manual — Using the Guile-based CoaSim Simulator

    DEFF Research Database (Denmark)

    Mailund, T

    2006-01-01

    CoaSim is a tool for simulating the coalescent process with recombination and geneconversion, under either constant population size or exponential population growth. It effectively constructs the ancestral recombination graph for a given number of chromosomes and uses this to simulate samples...

  13. Getting Started with CoaSim — An Introduction to the Simulator CoaSim

    DEFF Research Database (Denmark)

    Mailund, T

    2005-01-01

    CoaSim is a tool for simulating the coalescent process with recombination and geneconversion, under either constant population size or exponential population growth. It effectively constructs the ancestral recombination graph for a given number of chromosomes and uses this to simulate samples...

  14. CoaSim Guile Manual — Using the Guile-based CoaSim Simulator

    DEFF Research Database (Denmark)

    Mailund, T

    2006-01-01

    CoaSim is a tool for simulating the coalescent process with recombination and geneconversion, under either constant population size or exponential population growth. It effectively constructs the ancestral recombination graph for a given number of chromosomes and uses this to simulate samples of ...... of SNP and micro-satellite haplotypes or genotypes....

  15. Getting Started with CoaSim — An Introduction to the Simulator CoaSim

    DEFF Research Database (Denmark)

    Mailund, T

    2005-01-01

    CoaSim is a tool for simulating the coalescent process with recombination and geneconversion, under either constant population size or exponential population growth. It effectively constructs the ancestral recombination graph for a given number of chromosomes and uses this to simulate samples of ...... of SNP and micro-satellite haplotypes or genotypes....

  16. Comparative assessment of bone pose estimation using Point Cluster Technique and OpenSim.

    Science.gov (United States)

    Lathrop, Rebecca L; Chaudhari, Ajit M W; Siston, Robert A

    2011-11-01

    Estimating the position of the bones from optical motion capture data is a challenge associated with human movement analysis. Bone pose estimation techniques such as the Point Cluster Technique (PCT) and simulations of movement through software packages such as OpenSim are used to minimize soft tissue artifact and estimate skeletal position; however, using different methods for analysis may produce differing kinematic results which could lead to differences in clinical interpretation such as a misclassification of normal or pathological gait. This study evaluated the differences present in knee joint kinematics as a result of calculating joint angles using various techniques. We calculated knee joint kinematics from experimental gait data using the standard PCT, the least squares approach in OpenSim applied to experimental marker data, and the least squares approach in OpenSim applied to the results of the PCT algorithm. Maximum and resultant RMS differences in knee angles were calculated between all techniques. We observed differences in flexion/extension, varus/valgus, and internal/external rotation angles between all approaches. The largest differences were between the PCT results and all results calculated using OpenSim. The RMS differences averaged nearly 5° for flexion/extension angles with maximum differences exceeding 15°. Average RMS differences were relatively small (techniques appeared to be a constant offset between the PCT and all OpenSim results, which may be due to differences in the definition of anatomical reference frames, scaling of musculoskeletal models, and/or placement of virtual markers within OpenSim. Different methods for data analysis can produce largely different kinematic results, which could lead to the misclassification of normal or pathological gait. Improved techniques to allow non-uniform scaling of generic models to more accurately reflect subject-specific bone geometries and anatomical reference frames may reduce differences

  17. Study and optimisation of SIMS performed with He{sup +} and Ne{sup +} bombardment

    Energy Technology Data Exchange (ETDEWEB)

    Pillatsch, L.; Vanhove, N.; Dowsett, D. [Department “Science and Analysis of Materials” (SAM), Centre de Recherche Public – Gabriel Lippmann, 41 rue du Brill, L-4422 Belvaux (Luxembourg); Sijbrandij, S.; Notte, J. [Carl Zeiss Microscopy LLC, One Corporation Way, Peabody, MA 01960 (United States); Wirtz, T., E-mail: wirtz@lippmann.lu [Department “Science and Analysis of Materials” (SAM), Centre de Recherche Public – Gabriel Lippmann, 41 rue du Brill, L-4422 Belvaux (Luxembourg)

    2013-10-01

    The combination of the high-brightness He{sup +}/Ne{sup +} atomic level ion source with the detection capabilities of secondary ion mass spectrometry (SIMS) opens up the prospect of obtaining chemical information with high lateral resolution and high sensitivity on the Zeiss ORION helium ion microscope (HIM). A feasibility study with He{sup +} and Ne{sup +} ion bombardment is presented in order to determine the performance of SIMS analyses using the HIM. Therefore, the sputtering yields, useful yields and detection limits obtained for metallic (Al, Ni and W) as well as semiconductor samples (Si, Ge, GaAs and InP) were investigated. All the experiments were performed on a Cameca IMS4f SIMS instrument which was equipped with a caesium evaporator and oxygen flooding system. For most of the elements, useful yields in the range of 10{sup −4} to 3 × 10{sup −2} were measured with either O{sub 2} or Cs flooding. SIMS experiments performed directly on the ORION with a prototype secondary ion extraction and detection system lead to results that are consistent with those obtained on the IMS4f. Taking into account the obtained useful yields and the analytical conditions, such as the ion current and typical dwell time on the ORION HIM, detection limits in the at% range and better can be obtained during SIMS imaging at 10 nm lateral resolution with Ne{sup +} bombardment and down to the ppm level when a lateral resolution of 100 nm is chosen. Performing SIMS on the HIM with a good detection limit while maintaining an excellent lateral resolution (<50 nm) is therefore very promising.

  18. ECO-BIOLOGICAL SYSTEM MODELING

    Directory of Open Access Journals (Sweden)

    T. I. Burak

    2015-01-01

    Full Text Available The methodology for computer modeling of complex eco-biological models is presented in this paper. It is based on system approach of J. Forrester. Developed methodology is universal for complex ecological and biological systems. Modeling algorithm considers specialties of eco-biological systems and shows adequate and accurate results in practice. 

  19. Uncovering new challenges in bio-analysis with ToF-SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Fletcher, John S. [Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester M1 7DN (United Kingdom)], E-mail: john.fletcher@manchester.ac.uk; Henderson, Alex; Biddulph, Gregory X.; Vaidyanathan, Seetharaman; Lockyer, Nicholas P.; Vickerman, John C. [Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester M1 7DN (United Kingdom)

    2008-12-15

    The introduction of cluster ion beams for routine SIMS analysis has greatly improved the prospects for characterising biological samples. The ultimate quality of the secondary ion image remains limited by the efficiency of the primary beam. Without overcoming the low ionisation probabilities associated with SIMS, the highest lateral resolution available for molecular imaging becomes limited by the statistical probability of any ions being generated from the area of the pixel. C{sub 60}{sup +} primary ions are currently the most efficient available for routine analysis but although commercial systems have been demonstrated to produce spot sizes under 200 nm, focusing the beam produced in such electron impact sources results in rather low ion currents. The time scale for such high lateral resolution analysis can become impractical on conventional time-of-flight instruments. Molecular depth profiling capability has been revealed using SF{sub 5}{sup +} and C{sub 60}{sup +} ion beams and recent work has advanced the technique by combining the profiling and imaging abilities of these high efficiency projectiles to generate 3D molecular maps of biological systems. In this paper we discuss the challenges associated with 2D and 3D bio-analysis with emphasis on how instrumental advances aid such investigations yet demonstrating the obstacles that need to be overcome using a range of model and real world biological samples. We discuss complications with the biological matrix, challenges in manipulating and visualising the data and look at how instrumental advantages might aid the routine generation of these 3D molecular maps.

  20. Alpine Windharvest: development of information base regarding potentials and the necessary technical, legal and socio-economic conditions for expanding wind energy in the Alpine Space - CFD modelling evaluation - Summary of WindSim CFD modelling procedure and validation

    Energy Technology Data Exchange (ETDEWEB)

    Schaffner, B.; Cattin, R. [Meteotest, Berne (Switzerland)

    2005-07-01

    This report presents the development work carried out by the Swiss meteorology specialists of the company METEOTEST as part of a project carried out together with the Swiss wind-energy organisation 'Suisse Eole'. The framework for the project is the EU Interreg IIIB Alpine Space Programme, a European Community Initiative Programme funded by the European Regional Development Fund. The project investigated the use of digital relief-analysis. The report describes the development of a basic information system to aid the investigation of the technical, legal and socio-economical conditions for the use of wind energy in the alpine area. The report deals with the use of computational fluid dynamics and wind simulation modelling techniques and their validation. Recommendations on the use of the results are made.

  1. TOF-SIMS investigation of Streptomyces coelicolor, a mycelial bacterium

    Energy Technology Data Exchange (ETDEWEB)

    Vaidyanathan, Seetharaman [Surface Analytical Research Centre, Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester M1 7DN (United Kingdom)], E-mail: S.Vaidyanathan@manchester.ac.uk; Fletcher, John S.; Lockyer, Nicholas P.; Vickerman, John C. [Surface Analytical Research Centre, Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess Street, Manchester M1 7DN (United Kingdom)

    2008-12-15

    Streptomyces coelicolor is a mycelial microorganism that produces several secondary metabolites, including antibiotics. The physiology of the organism has largely been investigated in liquid cultures due to ease of monitoring different physiological parameters and more homogeneous culture conditions. However, solid cultures reflect the natural physiology of the microorganism better, given that in its natural state it grows in the soil. Imaging mass spectrometry with TOF-SIMS and C{sub 60}{sup +} primary ion beams offers a potential route to studying chemical changes at the molecular level, both intracellular and extracellular that can help in understanding the natural physiology of the microorganism. Here, we report the application of the technique for studying the lateral distribution of the chemical species detected in a population, grown in both liquid and solid cultures. The capability of the technique for studying biological systems with minimal system intervention is demonstrated.

  2. TOF-SIMS investigation of Streptomyces coelicolor, a mycelial bacterium

    Science.gov (United States)

    Vaidyanathan, Seetharaman; Fletcher, John S.; Lockyer, Nicholas P.; Vickerman, John C.

    2008-12-01

    Streptomyces coelicolor is a mycelial microorganism that produces several secondary metabolites, including antibiotics. The physiology of the organism has largely been investigated in liquid cultures due to ease of monitoring different physiological parameters and more homogeneous culture conditions. However, solid cultures reflect the natural physiology of the microorganism better, given that in its natural state it grows in the soil. Imaging mass spectrometry with TOF-SIMS and C 60+ primary ion beams offers a potential route to studying chemical changes at the molecular level, both intracellular and extracellular that can help in understanding the natural physiology of the microorganism. Here, we report the application of the technique for studying the lateral distribution of the chemical species detected in a population, grown in both liquid and solid cultures. The capability of the technique for studying biological systems with minimal system intervention is demonstrated.

  3. Chemical Imaging of the Cell Membrane by NanoSIMS

    Energy Technology Data Exchange (ETDEWEB)

    Weber, P K; Kraft, M L; Frisz, J F; Carpenter, K J; Hutcheon, I D

    2010-02-23

    The existence of lipid microdomains and their role in cell membrane organization are currently topics of great interest and controversy. The cell membrane is composed of a lipid bilayer with embedded proteins that can flow along the two-dimensional surface defined by the membrane. Microdomains, known as lipid rafts, are believed to play a central role in organizing this fluid system, enabling the cell membrane to carry out essential cellular processes, including protein recruitment and signal transduction. Lipid rafts are also implicated in cell invasion by pathogens, as in the case of the HIV. Therefore, understanding the role of lipid rafts in cell membrane organization not only has broad scientific implications, but also has practical implications for medical therapies. One of the major limitations on lipid organization research has been the inability to directly analyze lipid composition without introducing artifacts and at the relevant length-scales of tens to hundreds of nanometers. Fluorescence microscopy is widely used due to its sensitivity and specificity to the labeled species, but only the labeled components can be observed, fluorophores can alter the behavior of the lipids they label, and the length scales relevant to imaging cell membrane domains are between that probed by fluorescence resonance energy transfer (FRET) imaging (<10 nm) and the diffraction limit of light. Topographical features can be imaged on this length scale by atomic force microscopy (AFM), but the chemical composition of the observed structures cannot be determined. Immuno-labeling can be used to study the distribution of membrane proteins at high resolution, but not lipid composition. We are using imaging mass spectrometry by secondary ion mass spectrometry (SIMS) in concert with other high resolution imaging methods to overcome these limitations. The experimental approach of this project is to combine molecule-specific stable isotope labeling with high-resolution SIMS using a

  4. SimLandScape, a sketching tool for collaborative spatial planning

    NARCIS (Netherlands)

    Ligtenberg, A.; Vries, de E.A.; Vreenegoor, R.; Bulens, J.D.

    2011-01-01

    Interactive spatial planning requires the development of planning support systems (PSSs) that are specifically tailored to support the exchange of ideas and visions during the planning process. This article presents SimLandScape, a client-server-based PSS designed to combine sketching and geographic

  5. WinSim: A simple simulation program for evaluating the influence of windows on heating demand and risk of overheating

    DEFF Research Database (Denmark)

    Schultz, Jørgen Munthe; Svendsen, Sv Aa Højgaard

    1998-01-01

    A two-node model of a room has been implemented in a computer program, WinSim, devel-oped for evaluation of thermal performance of windows in new buildings and in case of retro-fitting. The program calculates the annual heating demand and the number of hours with in-door temperatures higher than...... a user defined limit. WinSim is characterised by the limited amount of required input data. Guide-lines for calculation of the effective thermal capacity of the room is given, and results obtained with WinSim have been compared to results from an advanced building simulation program. Good agreement has...... been found between the two programs with respect to calculated annual heating demand and energy savings due to win-dow exchange, and also the calculated number of hours with overtemperature is similar. Based on the limited examples used for the comparison it can be concluded that WinSim is well suited...

  6. A Friendly-Biological Reactor SIMulator (BioReSIM for studying biological processes in wastewater treatment processes

    Directory of Open Access Journals (Sweden)

    Raul Molina

    2014-12-01

    Full Text Available Biological processes for wastewater treatments are inherently dynamic systems because of the large variations in the influent wastewater flow rate, concentration composition and the adaptive behavior of the involved microorganisms. Moreover, the sludge retention time (SRT is a critical factor to understand the bioreactor performances when changes in the influent or in the operation conditions take place. Since SRT are usually in the range of 10-30 days, the performance of biological reactors needs a long time to be monitored in a regular laboratory demonstration, limiting the knowledge that can be obtained in the experimental lab practice. In order to overcome this lack, mathematical models and computer simulations are useful tools to describe biochemical processes and predict the overall performance of bioreactors under different working operation conditions and variations of the inlet wastewater composition. The mathematical solution of the model could be difficult as numerous biochemical processes can be considered. Additionally, biological reactors description (mass balance, etc. needs models represented by partial or/and ordinary differential equations associated to algebraic expressions, that require complex computational codes to obtain the numerical solutions. Different kind of software for mathematical modeling can be used, from large degree of freedom simulators capable of free models definition (as AQUASIM, to closed predefined model structure programs (as BIOWIN. The first ones usually require long learning curves, whereas the second ones could be excessively rigid for specific wastewater treatment systems. As alternative, we present Biological Reactor SIMulator (BioReSIM, a MATLAB code for the simulation of sequencing batch reactors (SBR and rotating biological contactors (RBC as biological systems of suspended and attached biomass for wastewater treatment, respectively. This BioReSIM allows the evaluation of simple and complex

  7. MeV-SIMS yield measurements using a Si-PIN diode as a primary ion current counter

    Energy Technology Data Exchange (ETDEWEB)

    Stoytschew, Valentin; Bogdanović Radović, Iva [Ruđer Bošković Institute, Zagreb (Croatia); Demarche, Julien [University of Surrey, Surrey (United Kingdom); Jakšić, Milko [Ruđer Bošković Institute, Zagreb (Croatia); Matjačić, Lidija [University of Surrey, Surrey (United Kingdom); Siketić, Zdravko [Ruđer Bošković Institute, Zagreb (Croatia); Webb, Roger [University of Surrey, Surrey (United Kingdom)

    2016-03-15

    Megaelectronvolt-Secondary Ion Mass Spectrometry (MeV-SIMS) is an emerging Ion Beam Analysis technique for molecular speciation and submicron imaging. Various setups have been constructed in the recent years. Still a systematic investigation on the dependence of MeV-SIMS yields on different ion beam parameters is missing. A reliable measurement method of the beam current down to the attoampere range is needed for this investigation. Therefore, a new detector has been added to the MeV-SIMS setup at the Ruđer Bošković Institute (RBI), which measures the current directly using a Si PIN-diode. In this work, we present the constructed system, its characteristics, and results of the first yield measurements. These measurements have already identified important factors that have to be considered while constructing a MeV SIMS setup.

  8. Mathematical System Theory and System Modeling

    OpenAIRE

    1980-01-01

    Choosing models related effectively to the questions to be addressed is a central issue in the craft of systems analysis. Since the mathematical description the analyst chooses constrains the types of issues he candeal with, it is important for these models to be selected so as to yield limitations that are acceptable in view of the questions the systems analysis seeks to answer. In this paper, the author gives an overview of the central issues affecting the question of model choice. To ...

  9. Tracking microbial interactions with NanoSIMS

    Energy Technology Data Exchange (ETDEWEB)

    Musat, Niculina; Musat, Florin; Weber, Peter Kilian; Pett-Ridge, Jennifer

    2016-10-01

    The combination of stable isotope probing (SIP), NanoSIMS imaging and microbe identification via fluorescence in situ hybridization (FISH) is often used to link identity to function at the cellular level in microbial communities. Many opportunities remain for nanoSIP to identify metabolic interactions and nutrient fluxes within syntrophic associations and obligate symbioses where exchanges can be extremely rapid. However, additional data, such as genomic potential, gene expression or other imaging modalities are often critical to deciphering the mechanisms underlying specific interactions, and researchers must keep sample preparation artefacts in mind. Here we focus on recent applications of nanoSIP, particularly where used to track exchanges of isotopically labelled molecules between organisms. We highlight metabolic interactions within syntrophic consortia, carbon/nitrogen fluxes between phototrophs and their heterotrophic partners, and symbiont–host nutrient sharing.

  10. Development of a system emulating the global carbon cycle in Earth system models

    Directory of Open Access Journals (Sweden)

    K. Tachiiri

    2010-02-01

    Full Text Available By combining the strong points of general circulation models (GCMs, which contain detailed and complex processes, and Earth system models of intermediate complexity (EMICs, which are quick and capable of large ensembles, we have developed a loosely coupled model (LCM which can represent the outputs of a GCM-based Earth system model using much smaller computational resources.

    We address the problem of relatively poor representation of precipitation within our EMIC, which prevents us from directly coupling it to a vegetation model, by coupling it to a precomputed transient simulation using a full GCM. The LCM consists of three components: an EMIC (MIROC-lite which consists of a 2-D energy balance atmosphere coupled to a low resolution 3-D GCM ocean including an ocean carbon cycle; a state of the art vegetation model (Sim-CYCLE; and a database of daily temperature, precipitation, and other necessary climatic fields to drive Sim-CYCLE from a precomputed transient simulation from a state of the art AOGCM. The transient warming of the climate system is calculated from MIROC-lite, with the global temperature anomaly used to select the most appropriate annual climatic field from the pre-computed AOGCM simulation which, in this case, is a 1% pa increasing CO2 concentration scenario.

    By adjusting the climate sensitivity of MIROC-lite, the transient warming of the LCM could be adjusted to closely follow the low sensitivity (4.0 K version of MIROC3.2. By tuning of the physical and biogeochemical parameters it was possible to reasonably reproduce the bulk physical and biogeochemical properties of previously published CO2 stabilisation scenarios for that model. As an example of an application of the LCM, the behavior of the high sensitivity version of MIROC3.2 (with 6.3 K climate sensitivity is also demonstrated. Given the highly tunable nature of the model, we believe that the LCM should be a very useful tool for

  11. Model Reduction of Hybrid Systems

    DEFF Research Database (Denmark)

    Shaker, Hamid Reza

    systems are derived in this thesis. The results are used for output feedback control of switched nonlinear systems. Model reduction of piecewise affine systems is also studied in this thesis. The proposed method is based on the reduction of linear subsystems inside the polytopes. The methods which......High-Technological solutions of today are characterized by complex dynamical models. A lot of these models have inherent hybrid/switching structure. Hybrid/switched systems are powerful models for distributed embedded systems design where discrete controls are applied to continuous processes...... of hybrid systems, designing controllers and implementations is very high so that the use of these models is limited in applications where the size of the state space is large. To cope with complexity, model reduction is a powerful technique. This thesis presents methods for model reduction and stability...

  12. Modelling on fuzzy control systems

    Institute of Scientific and Technical Information of China (English)

    LI; Hongxing(李洪兴); WANG; Jiayin(王加银); MIAO; Zhihong(苗志宏)

    2002-01-01

    A kind of modelling method for fuzzy control systems is first proposed here, which is calledmodelling method based on fuzzy inference (MMFI). It should be regarded as the third modelling method thatis different from two well-known modelling methods, that is, the first modelling method, mechanism modellingmethod (MMM), and the second modelling method, system identification modelling method (SlMM). Thismethod can, based on the interpolation mechanism on fuzzy logic system, transfer a group of fuzzy inferencerules describing a practice system into a kind of nonlinear differential equation with variable coefficients, calledHX equations, so that the mathematical model of the system can be obtained. This means that we solve thedifficult problem of how to get a model represented as differential equations on a complicated or fuzzy controlsystem.

  13. Biochemical imaging of tissues by SIMS for biomedical applications

    Science.gov (United States)

    Lee, Tae Geol; Park, Ji-Won; Shon, Hyun Kyong; Moon, Dae Won; Choi, Won Woo; Li, Kapsok; Chung, Jin Ho

    2008-12-01

    With the development of optimal surface cleaning techniques by cluster ion beam sputtering, certain applications of SIMS for analyzing cells and tissues have been actively investigated. For this report, we collaborated with bio-medical scientists to study bio-SIMS analyses of skin and cancer tissues for biomedical diagnostics. We pay close attention to the setting up of a routine procedure for preparing tissue specimens and treating the surface before obtaining the bio-SIMS data. Bio-SIMS was used to study two biosystems, skin tissues for understanding the effects of photoaging and colon cancer tissues for insight into the development of new cancer diagnostics for cancer. Time-of-flight SIMS imaging measurements were taken after surface cleaning with cluster ion bombardment by Bi n or C 60 under varying conditions. The imaging capability of bio-SIMS with a spatial resolution of a few microns combined with principal component analysis reveal biologically meaningful information, but the lack of high molecular weight peaks even with cluster ion bombardment was a problem. This, among other problems, shows that discourse with biologists and medical doctors are critical to glean any meaningful information from SIMS mass spectrometric and imaging data. For SIMS to be accepted as a routine, daily analysis tool in biomedical laboratories, various practical sample handling methodology such as surface matrix treatment, including nano-metal particles and metal coating, in addition to cluster sputtering, should be studied.

  14. CQI reporting strategy for Multi-SIM UEs

    DEFF Research Database (Denmark)

    Buthler, Jakob Lindbjerg; Sørensen, Troels Bundgaard

    2016-01-01

    UEs which support simultaneous activity from Multiple Active Subscriber Identities (Multi-SIM) has gained popularity within the last years. Such UEs are forced to discard data on one of the SIMs when both try to access the Radio Frequency (RF) interface simultaneously, creating gaps in the data t...

  15. Chern-Simons theory in SIM(1) superspace

    Energy Technology Data Exchange (ETDEWEB)

    Vohanka, Jiri [Masaryk University, Department of Theoretical Physics and Astrophysics, Brno (Czech Republic); Faizal, Mir [University of Waterloo, Department of Physics and Astronomy, Waterloo, ON (Canada)

    2015-12-15

    In this paper,wewill analyze a three-dimensional supersymmetric Chern-Simons theory in SIM(1) superspace formalism. The breaking of the Lorentz symmetry down to the SIM(1) symmetry breaks half the supersymmetry of the Lorentz invariant theory. So, the supersymmetry of the Lorentz invariant Chern-Simons theory with N = 1 supersymmetry will break down to N = 1/2 supersymmetry, when the Lorentz symmetry is broken down to the SIM(1) symmetry. First, we will write the Chern-Simons action using SIM(1) projections ofN = 1 superfields. However, as the SIM(1) transformations of these projections are very complicated, we will define SIM(1) superfields which transform simply under SIM(1) transformations. We will then express the Chern-Simons action using these SIM(1) superfields. Furthermore, we will analyze the gauge symmetry of this Chern-Simons theory. This is the first time that a Chern-Simons theory with N = 1/2 supersymmetry will be constructed on a manifold without a boundary. (orig.)

  16. Chern–Simons theory in SIM(1) superspace

    Energy Technology Data Exchange (ETDEWEB)

    Vohánka, Jiří [Department of Theoretical Physics and Astrophysics, Masaryk University, Kotlářská 267/2, 611 37, Brno (Czech Republic); Faizal, Mir, E-mail: mirfaizalmir@gmail.com [Department of Physics and Astronomy, University of Waterloo, N2L 3G1, Waterloo, ON (Canada)

    2015-12-14

    In this paper, we will analyze a three-dimensional supersymmetric Chern–Simons theory in SIM(1) superspace formalism. The breaking of the Lorentz symmetry down to the SIM(1) symmetry breaks half the supersymmetry of the Lorentz invariant theory. So, the supersymmetry of the Lorentz invariant Chern–Simons theory with N=1 supersymmetry will break down to N=1/2 supersymmetry, when the Lorentz symmetry is broken down to the SIM(1) symmetry. First, we will write the Chern–Simons action using SIM(1) projections of N=1 superfields. However, as the SIM(1) transformations of these projections are very complicated, we will define SIM(1) superfields which transform simply under SIM(1) transformations. We will then express the Chern–Simons action using these SIM(1) superfields. Furthermore, we will analyze the gauge symmetry of this Chern–Simons theory. This is the first time that a Chern–Simons theory with N=1/2 supersymmetry will be constructed on a manifold without a boundary.

  17. Binding properties of SUMO-interacting motifs (SIMs) in yeast.

    Science.gov (United States)

    Jardin, Christophe; Horn, Anselm H C; Sticht, Heinrich

    2015-03-01

    Small ubiquitin-like modifier (SUMO) conjugation and interaction play an essential role in many cellular processes. A large number of yeast proteins is known to interact non-covalently with SUMO via short SUMO-interacting motifs (SIMs), but the structural details of this interaction are yet poorly characterized. In the present work, sequence analysis of a large dataset of 148 yeast SIMs revealed the existence of a hydrophobic core binding motif and a preference for acidic residues either within or adjacent to the core motif. Thus the sequence properties of yeast SIMs are highly similar to those described for human. Molecular dynamics simulations were performed to investigate the binding preferences for four representative SIM peptides differing in the number and distribution of acidic residues. Furthermore, the relative stability of two previously observed alternative binding orientations (parallel, antiparallel) was assessed. For all SIMs investigated, the antiparallel binding mode remained stable in the simulations and the SIMs were tightly bound via their hydrophobic core residues supplemented by polar interactions of the acidic residues. In contrary, the stability of the parallel binding mode is more dependent on the sequence features of the SIM motif like the number and position of acidic residues or the presence of additional adjacent interaction motifs. This information should be helpful to enhance the prediction of SIMs and their binding properties in different organisms to facilitate the reconstruction of the SUMO interactome.

  18. Playing with Sims as a space of one's own

    DEFF Research Database (Denmark)

    Iversen, Sara Mosberg

    2014-01-01

    , this article analyses the articulated experiences of playing The Sims 2 and The Sims 3 in relation to how the players perceive the activity’s function in their everyday lives. Seven emic categories are identified and discussed in the inductive analysis, namely “relaxation and dealing with stress,” “playing...

  19. SimBasin: A serious gaming framework for integrated and cooperative decision-making in water management

    Science.gov (United States)

    Angarita, H.; Craven, J.; Caggiano, F.; Corzo, G.

    2016-12-01

    An Integrated approach involving extensive stakeholder dialogue is widely advocated in sustainable water management. However, it requires a social learning process in which scientist and stakeholders become aware of the relationship between their own frames of reference and those of others, differences can be dealt with constructively, and shared ideas can be used to facilitate cooperation. Key obstacles in this process are heritage systems, attitudes and processes, factually wrong, incomplete or unshared mental models, and lack of science-policy dialogue (Pahl-Wostl et al., 2005) To overcome these barriers, a space is required which is free of heritage systems, where mental models can be safely and easily compared and corrected, and where scientists and policy-makers can come together. A "serious game" can serve as such a space - Serious games are games or simulations used to achieve an organizational or educational goal, and such games have already been used to facilitate stakeholder cooperation in the water management sector (Rusca et al., 2005). As well as bringing stakeholders together, they can be an accessible interface between scientific models and non-experts. Here we present SimBasin, a multiplayer serious game framework and development engine. The engine allows to easily create a simulated multiplayer basin management game using WEAP water resources modelling software (SEI, 1992-2015), to facilitate the communication of the complex, long term and wide range relationships between hydrologic, climate, and human systems present in river basins, and enable dialogue between policy-makers and scientists. Different games have been created using the Sim-Basin engine and used in various contexts. Here are discussed experiences with stakeholders at a national forum in Bogotá, flood risk management agencies in the lower Magdalena River Basin in Colombia and with water professionals in Bangkok. The experience shows that the game is a useful tool for enabling

  20. Energy System Modeling with REopt

    Energy Technology Data Exchange (ETDEWEB)

    Simpkins, Travis; Anderson, Kate; Cutler, Dylan; Olis, Dan; Elgqvist, Emma; DiOrio, Nick; Walker, Andy

    2016-07-15

    This poster details how REopt - NREL's software modeling platform for energy systems integration and optimization - can help to model energy systems. Some benefits of modeling with REopt include optimizing behind the meter storage for cost and resiliency, optimizing lab testing, optimizing dispatch of utility scale storage, and quantifying renewable energy impact on outage survivability.

  1. Academic Support through Information System : Srinivas Integrated Model

    OpenAIRE

    Aithal, Sreeramana; Kumar, Suresh

    2016-01-01

    As part of imparting quality higher education for undergraduate and post graduate students, Srinivas Institute of Management Studies (SIMS) developed an education service model for integrated academic support known as Srinivas Integrated Model. Backed by the presumption that knowledge is power and information is fundamental to knowledge building and knowledge sharing, this model is aimed to provide information support to students for improved academic performance. Information on the college a...

  2. ActivitySim: large-scale agent based activity generation for infrastructure simulation

    Energy Technology Data Exchange (ETDEWEB)

    Gali, Emmanuel [Los Alamos National Laboratory; Eidenbenz, Stephan [Los Alamos National Laboratory; Mniszewski, Sue [Los Alamos National Laboratory; Cuellar, Leticia [Los Alamos National Laboratory; Teuscher, Christof [PORTLAND STATE UNIV

    2008-01-01

    The United States' Department of Homeland Security aims to model, simulate, and analyze critical infrastructure and their interdependencies across multiple sectors such as electric power, telecommunications, water distribution, transportation, etc. We introduce ActivitySim, an activity simulator for a population of millions of individual agents each characterized by a set of demographic attributes that is based on US census data. ActivitySim generates daily schedules for each agent that consists of a sequence of activities, such as sleeping, shopping, working etc., each being scheduled at a geographic location, such as businesses or private residences that is appropriate for the activity type and for the personal situation of the agent. ActivitySim has been developed as part of a larger effort to understand the interdependencies among national infrastructure networks and their demand profiles that emerge from the different activities of individuals in baseline scenarios as well as emergency scenarios, such as hurricane evacuations. We present the scalable software engineering principles underlying ActivitySim, the socia-technical modeling paradigms that drive the activity generation, and proof-of-principle results for a scenario in the Twin Cities, MN area of 2.6 M agents.

  3. SIM regional comparison SIM.L-K4.2009 on the calibration of internal and external diameter standards

    Science.gov (United States)

    Doiron, Theodore; Pires Alves, J. A.; Gastaldi, Bruno R.; Navarrete, Guillermo

    2015-01-01

    The Inter-American Metrology System (SIM) has carried out a key comparison of diameter measurements. The artifacts studied were four ring gages and four plug gages. The measurand was a specified diameter of each gauge at 20 °C and corrected to zero force. This report presents results obtained by the individual participants and an analysis of the results and their uncertainties. The results are in good agreement with one another, well within the range expected based on the measurement uncertainties claimed by the participants. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCL, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  4. The sim Operon Facilitates the Transport and Metabolism of Sucrose Isomers in Lactobacillus casei ATCC 334▿

    Science.gov (United States)

    Thompson, John; Jakubovics, Nicholas; Abraham, Bindu; Hess, Sonja; Pikis, Andreas

    2008-01-01

    Inspection of the genome sequence of Lactobacillus casei ATCC 334 revealed two operons that might dissimilate the five isomers of sucrose. To test this hypothesis, cells of L. casei ATCC 334 were grown in a defined medium supplemented with various sugars, including each of the five isomeric disaccharides. Extracts prepared from cells grown on the sucrose isomers contained high levels of two polypeptides with Mrs of ∼50,000 and ∼17,500. Neither protein was present in cells grown on glucose, maltose or sucrose. Proteomic, enzymatic, and Western blot analyses identified the ∼50-kDa protein as an NAD+- and metal ion-dependent phospho-α-glucosidase. The oligomeric enzyme was purified, and a catalytic mechanism is proposed. The smaller polypeptide represented an EIIA component of the phosphoenolpyruvate-dependent sugar phosphotransferase system. Phospho-α-glucosidase and EIIA are encoded by genes at the LSEI_0369 (simA) and LSEI_0374 (simF) loci, respectively, in a block of seven genes comprising the sucrose isomer metabolism (sim) operon. Northern blot analyses provided evidence that three mRNA transcripts were up-regulated during logarithmic growth of L. casei ATCC 334 on sucrose isomers. Internal simA and simF gene probes hybridized to ∼1.5- and ∼1.3-kb transcripts, respectively. A 6.8-kb mRNA transcript was detected by both probes, which was indicative of cotranscription of the entire sim operon. PMID:18310337

  5. Modeling soft interface dominated systems

    NARCIS (Netherlands)

    Lamorgese, A.; Mauri, R.; Sagis, L.M.C.

    2017-01-01

    The two main continuum frameworks used for modeling the dynamics of soft multiphase systems are the Gibbs dividing surface model, and the diffuse interface model. In the former the interface is modeled as a two dimensional surface, and excess properties such as a surface density, or surface energy

  6. Validation of systems biology models

    NARCIS (Netherlands)

    Hasdemir, D.

    2015-01-01

    The paradigm shift from qualitative to quantitative analysis of biological systems brought a substantial number of modeling approaches to the stage of molecular biology research. These include but certainly are not limited to nonlinear kinetic models, static network models and models obtained by the

  7. Modeling of deterministic chaotic systems

    Energy Technology Data Exchange (ETDEWEB)

    Lai, Y. [Department of Physics and Astronomy and Department of Mathematics, The University of Kansas, Lawrence, Kansas 66045 (United States); Grebogi, C. [Institute for Plasma Research, University of Maryland, College Park, Maryland 20742 (United States); Grebogi, C.; Kurths, J. [Department of Physics and Astrophysics, Universitaet Potsdam, Postfach 601553, D-14415 Potsdam (Germany)

    1999-03-01

    The success of deterministic modeling of a physical system relies on whether the solution of the model would approximate the dynamics of the actual system. When the system is chaotic, situations can arise where periodic orbits embedded in the chaotic set have distinct number of unstable directions and, as a consequence, no model of the system produces reasonably long trajectories that are realized by nature. We argue and present physical examples indicating that, in such a case, though the model is deterministic and low dimensional, statistical quantities can still be reliably computed. {copyright} {ital 1999} {ital The American Physical Society}

  8. Modelling of wastewater systems

    DEFF Research Database (Denmark)

    Bechmann, Henrik

    In this thesis, models of pollution fluxes in the inlet to 2 Danish wastewater treatment plants (WWTPs) as well as of suspended solids (SS) concentrations in the aeration tanks of an alternating WWTP and in the effluent from the aeration tanks are developed. The latter model is furthermore used...

  9. Modelling Epistemic Systems

    CERN Document Server

    Martins, Andre C R

    2012-01-01

    In this Chapter, I will explore the use of modeling in order to understand how Science works. I will discuss the modeling of scientific communities, providing a general, non-comprehensive overview of existing models, with a focus on the use of the tools of Agent-Based Modeling and Opinion Dynamics. A special attention will be paid to models inspired by a Bayesian formalism of Opinion Dynamics. The objective of this exploration is to better understand the effect that different conditions might have on the reliability of the opinions of a scientific community. We will see that, by using artificial worlds as exploring grounds, we can prevent some epistemological problems with the definition of truth and obtain insights on the conditions that might cause the quest for more reliable knowledge to fail.

  10. From Numeric Models to Granular System Modeling

    Directory of Open Access Journals (Sweden)

    Witold Pedrycz

    2015-03-01

    To make this study self-contained, we briefly recall the key concepts of granular computing and demonstrate how this conceptual framework and its algorithmic fundamentals give rise to granular models. We discuss several representative formal setups used in describing and processing information granules including fuzzy sets, rough sets, and interval calculus. Key architectures of models dwell upon relationships among information granules. We demonstrate how information granularity and its optimization can be regarded as an important design asset to be exploited in system modeling and giving rise to granular models. With this regard, an important category of rule-based models along with their granular enrichments is studied in detail.

  11. Research on Pneumatically Actuated 6-DOF Parallel Robot Based on SimMechanics%基于SimMechanics的气动6自由度并联机器人的研究

    Institute of Scientific and Technical Information of China (English)

    刘颖超; 李军; 王维

    2013-01-01

    This paper is concerned with the practical application study of a pneumatical y actuated Stewart-Gough platform with 6-degrees of freedom (6-DOF).Considering the characteristics of the pneumatical y actuated 6-DOF paral el robot,the mathematical model of pneumatic servo sys-tem is established,and SimMechanics module is also introduced to build the mechanical model of the pneumatical y actuated 6-DOF paral el robot.The modeling of pneumatic-mechanical syste-mof the paral el robot avoids the complex modeling process of Stewart platform.Simulation and test processes are carried.The processes show that the test results correlate wel with the simu-lation result,and the simulation model can be used to describe the real motion of the 6-DOF par-al el robot.The effect of pneumatic servo control system is achieved.%针对气压伺服式6自由度并联机器人的特点,首先对气压伺服系统进行建模分析,然后利用SimMechanics对气动6自由度并联机器人的机械模块进行建模,并对并联机器人整体进行气动-机械建模,此建模方法避免了Stewart平台复杂的建模过程。进行仿真分析和实验研究,结果表明:仿真数据与实验结果相符,仿真模型较能真实的模拟6自由度并联机器人的运动,并且气动也能达到伺服控制的效果。

  12. Modeling Mergers of Known Galactic Systems of Binary Neutron Stars

    CERN Document Server

    Feo, Alessandra; Maione, Francesco; Löffler, Frank

    2016-01-01

    We present a study of the merger of six different known galactic systems of binary neutron stars (BNS) of unequal mass with a mass ratio between $0.75$ and $0.99$. Specifically, these systems are J1756-2251, J0737-3039A, J1906+0746, B1534+12, J0453+1559 and B1913+16. We follow the dynamics of the merger from the late stage of the inspiral process up to $\\sim$ 20 ms after the system has merged, either to form a hyper-massive neutron star (NS) or a rotating black hole (BH), using a semi-realistic equation of state (EOS), namely the seven-segment piece-wise polytropic SLy with a thermal component. For the most extreme of these systems ($q=0.75$, J0453+1559), we also investigate the effects of different EOSs: APR4, H4, and MS1. Our numerical simulations are performed using only publicly available open source code such as, the Einstein Toolkit code deployed for the dynamical evolution and the LORENE code for the generation of the initial models. We show results on the gravitational wave signals, spectrogram and fr...

  13. Modeling and Simulation of Complex Network Attributes on Coordinating Large Multiagent System

    Science.gov (United States)

    Li, Xiang; Liu, Ming

    2014-01-01

    With the expansion of distributed multiagent systems, traditional coordination strategy becomes a severe bottleneck when the system scales up to hundreds of agents. The key challenge is that in typical large multiagent systems, sparsely distributed agents can only communicate directly with very few others and the network is typically modeled as an adaptive complex network. In this paper, we present simulation testbed CoordSim built to model the coordination of network centric multiagent systems. Based on the token-based strategy, the coordination can be built as a communication decision problem that agents make decisions to target communications and pass them over to the capable agents who will potentially benefit the team most. We have theoretically analyzed that the characters of complex network make a significant difference with both random and intelligent coordination strategies, which may contribute to future multiagent algorithm design. PMID:24955399

  14. Pluralistic Modeling of Complex Systems

    CERN Document Server

    Helbing, Dirk

    2010-01-01

    The modeling of complex systems such as ecological or socio-economic systems can be very challenging. Although various modeling approaches exist, they are generally not compatible and mutually consistent, and empirical data often do not allow one to decide what model is the right one, the best one, or most appropriate one. Moreover, as the recent financial and economic crisis shows, relying on a single, idealized model can be very costly. This contribution tries to shed new light on problems that arise when complex systems are modeled. While the arguments can be transferred to many different systems, the related scientific challenges are illustrated for social, economic, and traffic systems. The contribution discusses issues that are sometimes overlooked and tries to overcome some frequent misunderstandings and controversies of the past. At the same time, it is highlighted how some long-standing scientific puzzles may be solved by considering non-linear models of heterogeneous agents with spatio-temporal inte...

  15. SimConcept: a hybrid approach for simplifying composite named entities in biomedical text.

    Science.gov (United States)

    Wei, Chih-Hsuan; Leaman, Robert; Lu, Zhiyong

    2015-07-01

    One particular challenge in biomedical named entity recognition (NER) and normalization is the identification and resolution of composite named entities, where a single span refers to more than one concept (e.g., BRCA1/2). Previous NER and normalization studies have either ignored composite mentions, used simple ad hoc rules, or only handled coordination ellipsis, making a robust approach for handling multitype composite mentions greatly needed. To this end, we propose a hybrid method integrating a machine-learning model with a pattern identification strategy to identify the individual components of each composite mention. Our method, which we have named SimConcept, is the first to systematically handle many types of composite mentions. The technique achieves high performance in identifying and resolving composite mentions for three key biological entities: genes (90.42% in F-measure), diseases (86.47% in F-measure), and chemicals (86.05% in F-measure). Furthermore, our results show that using our SimConcept method can subsequently improve the performance of gene and disease concept recognition and normalization. SimConcept is available for download at: http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/SimConcept/.

  16. SIM parameter-based security for mobile e-commerce settings

    Directory of Open Access Journals (Sweden)

    Francisco Orlando Martínez Pabón

    2010-04-01

    Full Text Available Security requirements are more demanding in the e-commerce domain. However, mobile e -commerce settings not only insist on security requirements, they also require balance between security levels and hardware and usability device ability. These features require designing models having simple authentication and authorisation scheme which also ensures information integrity for each e -transaction. The Mobile and Wireless Applications’ Development Interest Group W@Pcolombia thus developed the P3SIM platform so that mobile applications might include SIM parameter-based security features. The P3SIM platform’s framework and compilation and simulation settings combines the advantages of identification provided by the SIM module with the security features provided by SATSA and Java Card APIs for Java ME environments, one of the most-used platforms for mobile application development. Developing an m-commerce-based prototype not only shows the platform’s ability to operate in secure environments, it also shows its ability to comply with environmental security requirements.

  17. Role of p-induced population of medium mass(A $\\sim$ 150) neutron rich nuclei

    CERN Document Server

    Banerjee, D; Bhattacharjee, T; Guin, R; Das, S K; Das, P; Pandit, Deepak; Mukherjee, A; Chowdhury, A; Bhattacharya, Soumik; Gupta, S Das; Bhattacharyya, S; Mukhopadhyay, P; Banerjee, S R

    2014-01-01

    Excitation functions were measured by stacked-foil activation technique for the $^{150}$Nd(p, xpyn) reaction using 97.65$%$ enriched $^{150}$Nd target. Measurement up to $\\sim$50$%$ above barrier and down to 18$%$ below the barrier was performed using proton beam energy (E$_p$) of 7 - 15 MeV from VECC Cyclotron. The yield of suitable $\\gamma$ rays emitted following the decay of relevant evaporation residues was determined using a 50$%$ High Purity Germanium (HPGe) detector.(p,n) cross section was found to follow the expected trend with a maximum value of 63.7(4.9)mb at E$_p$ $\\sim$ 8.6 MeV. (p,2n) cross section gradually increased with E$_p$ and had maximum contribution to the total reaction cross section after E$_p$ $\\sim$ 9.0 MeV. (p, p$^{\\prime}$n) reaction channel also showed a reasonable yield with a threshold of E$_p$ $\\sim$ 12.0 MeV. The experimental data were corroborated with statistical model calculations using different codes, viz., CASCADE, ALICE/91 and EMPIRE3.1. All the calculations using a suit...

  18. In situ molecular imaging of hydrated biofilm in a microfluidic reactor by ToF-SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Hua, Xin; Yu, Xiao-Ying; Wang, Zhaoying; Yang, Li; Liu, Bingwen; Zhu, Zihua; Tucker, Abigail E.; Chrisler, William B.; Hill, Eric A.; Thevuthasan, Suntharampillai; Lin, Yuehe; Liu, Songqin; Marshall, Matthew J.

    2014-02-26

    The first results of using a novel single channel microfluidic reactor to enable Shewanella biofilm growth and in situ characterization using time-of-flight secondary ion mass spectrometry (ToF-SIMS) in the hydrated environment are presented. The new microfluidic interface allows direct probing of the liquid surface using ToF-SIMS, a vacuum surface technique. The detection window is an aperture of 2 m in diameter on a thin silicon nitride (SiN) membrane and it allows direct detection of the liquid surface. Surface tension of the liquid flowing inside the microchannel holds the liquid within the aperture. ToF-SIMS depth profiling was used to drill through the SiN membrane and the biofilm grown on the substrate. In situ 2D imaging of the biofilm in hydrated state was acquired, providing spatial distribution of the chemical compounds in the biofilm system. This data was compared with a medium filled microfluidic reactor devoid of biofilm and dried biofilm samples deposited on clean silicon wafers. Principle Component Analysis (PCA) was used to investigate these observations. Our results show that imaging biofilms in the hydrated environment using ToF-SIMS is possible using the unique microfluidic reactor. Moreover, characteristic biofilm fatty acids fragments were observed in the hydrated biofilm grown in the microfluidic channel, illustrating the advantage of imaging biofilm in its native environment.

  19. Real-time Model Development of Core Protection and Monitoring System for SMART Simulator Application

    Energy Technology Data Exchange (ETDEWEB)

    Koo, Bonseung; Hwang, Daehyun [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2013-05-15

    Important features of the software models are described for the application to SMART simulator. A real-time performance of the models was examined for various simulation scenarios. Areal-time model development of core protection and monitoring algorithms for SMART simulator is being studied. Software algorithms as well as design bases and requirements for core protection and monitoring are developed and various performance tests are done. From test results, it is judged that SCOPS{sub S}SIM and SCOMS{sub S}SIM algorithms and calculational capabilities are appropriate for core protection and monitoring program in SMART simulator. A multi-purpose best-estimate simulator for the SMART is being established which is purposed to be used as a tool to evaluate the impacts of design changes on the safety performance, and to improve and/or optimize the operating procedure of the SMART. In keeping with these purposes, a real-time model of the digital core protection and monitoring systems was developed on the basis of SCOPS and SCOMS algorithms of SMART.

  20. Integrated Modeling Systems

    Science.gov (United States)

    1989-01-01

    American Economic Review , 71:1 (March 1981). 181 J.M. Jones and F. Zufryden. "Adding Explanatory Variables to a Consumer Purchase Behavior Model: An...McCall. "An Operational Measure of Liquidity," The American Economic Review , 761 (March 1986). WMSI Working Paper 329. 212 Nelson, R., R. Sarin, and R

  1. Robust Disaster Recovery System Model

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    Highly security-critical system should possess features of continuous service. We present a new Robust Disaster Recovery System Model (RDRSM). Through strengthening the ability of safe communications, RDRSM guarantees the secure and reliable command on disaster recovery. Its self-supervision capability can monitor the integrality and security of disaster recovery system itself. By 2D and 3D real-time visible platform provided by GIS, GPS and RS, the model makes the using, management and maintenance of disaster recovery system easier. RDRSM possesses predominant features of security, robustness and controllability. And it can be applied to highly security-critical environments such as E-government and bank. Conducted by RDRSM, an important E-government disaster recovery system has been constructed successfully. The feasibility of this model is verified by practice. We especially emphasize the significance of some components of the model, such as risk assessment, disaster recovery planning, system supervision and robust communication support.

  2. Mechanical Systems, Classical Models

    CERN Document Server

    Teodorescu, Petre P

    2007-01-01

    All phenomena in nature are characterized by motion; this is an essential property of matter, having infinitely many aspects. Motion can be mechanical, physical, chemical or biological, leading to various sciences of nature, mechanics being one of them. Mechanics deals with the objective laws of mechanical motion of bodies, the simplest form of motion. In the study of a science of nature mathematics plays an important role. Mechanics is the first science of nature which was expressed in terms of mathematics by considering various mathematical models, associated to phenomena of the surrounding nature. Thus, its development was influenced by the use of a strong mathematical tool; on the other hand, we must observe that mechanics also influenced the introduction and the development of many mathematical notions. In this respect, the guideline of the present book is precisely the mathematical model of mechanics. A special accent is put on the solving methodology as well as on the mathematical tools used; vectors, ...

  3. Genetic Circuit for the Early Warning of Lung Cancer using iBioSim

    Directory of Open Access Journals (Sweden)

    Wang Xiang

    2016-01-01

    Full Text Available With the development of molecular biology and gene-engineering technology, gene diagnosis has been an emerging approach for modern life sciences. Biological marker, recognized as the hot topic in the molecular and gene fields, has important values in early diagnosis, malignant tumour stage, treatment and therapeutic efficacy evaluation. The design of markers detection genetic circuit system for lung cancer is presented as a new method to provide basis for early warning and therapy. The system consists of three single-marker detection circuits and an integration circuit. The single-marker detection circuit provides an instantaneous low level when target marker’s concentration reaches the threshold. The integration circuit uses gene and gate to complete the output data fusion from single-marker detection circuit through logic operations to finish the combined detection. All the structure is modelled and analyzed by iBioSim through the biochemical reactions of different gene circuits. The experimental result indicates that the whole lung cancer detection system can realize joint detection of tumor markers with good stability and sensitivity.

  4. Análise da qualidade das estatísticas vitais brasileiras: a experiência de implantação do SIM e do SINASC Quality analysis of Brazilian vital statistics: the experience of implementing the SIM and SINASC systems

    Directory of Open Access Journals (Sweden)

    Maria Helena Prado de Mello Jorge

    2007-06-01

    Full Text Available Sabe-se que um dos fins da informação é fornecer subsídios para ações adequadas, em cada setor. Há cerca de trinta anos, sistemas de informação vêm sendo criados pelo Ministério da Saúde. Objetivo: mostrar a evolução dos Sistemas de Informações sobre Mortalidade e Nascidos Vivos, desde a concepção, implantação (respectivamente, 1975 e 1989, até sua avaliação. Os Sistemas foram concebidos para suprir falhas do Registro Civil e permitir conhecer o perfil epidemiológico em todo o país. Este registro é ato jurídico e as anotações referem-se a dados necessários à comprovação legal do evento; à área de saúde faltavam informações sobre esses eventos e suas características relacionadas à saúde. Mostram-se avaliações quantitativas e qualitativas dos sistemas, feitas em níveis federal, estadual e municipal, visando medir a fidedignidade e as limitações dos dados. Conclui-se que os Sistemas vêm melhorando acentuadamente e, para o futuro, espera-se que a captação dos eventos, em ambos, aproxime-se de 100%, com adequada qualidade.One of the main purposes of health information is to help administrative staff and health planners take the best possible decisions for promoting the wellbeing of society. Since 1970, the Brazilian Ministry of Health has been developing and organizing Health Information Systems. This paper presents the progress of the Mortality Information System and the Live Birth Information System since they were first established, building up historical series with accurate figures for these vital events. Their positive and negative aspects are analyzed through quantitative and qualitative evaluations. Steadily improving, they are expected to attain full coverage and adequate quality in the near future.

  5. Studies of Catalytic Model Systems

    DEFF Research Database (Denmark)

    Holse, Christian

    The overall topic of this thesis is within the field of catalysis, were model systems of different complexity have been studied utilizing a multipurpose Ultra High Vacuum chamber (UHV). The thesis falls in two different parts. First a simple model system in the form of a ruthenium single crystal...... is investigated. Second the development of a complex Cu/ZnO nanoparticle model system is described and gas-induced dynamical changes in the model system is investigated. The ruthenium crystal serves as an extremely simple model for studying CO dissociation which is the rate limiting step of the methanation...... process. The Ru(0 1 54) surface is studied by means of Scanning Tunneling Microscopy (STM), Temperature Programmed Desoprtion (TPD), and Oxygen Titration (OT) experiments. Real space evidence of periodic features on every second monatomic step is observed via STM when the a clean ruthenium surface...

  6. SimCommSys: taking the errors out of error-correcting code simulations

    Directory of Open Access Journals (Sweden)

    Johann A. Briffa

    2014-06-01

    Full Text Available In this study, we present SimCommSys, a simulator of communication systems that we are releasing under an open source license. The core of the project is a set of C + + libraries defining communication system components and a distributed Monte Carlo simulator. Of principal interest is the error-control coding component, where various kinds of binary and non-binary codes are implemented, including turbo, LDPC, repeat-accumulate and Reed–Solomon. The project also contains a number of ready-to-build binaries implementing various stages of the communication system (such as the encoder and decoder, a complete simulator and a system benchmark. Finally, SimCommSys also provides a number of shell and python scripts to encapsulate routine use cases. As long as the required components are already available in SimCommSys, the user may simulate complete communication systems of their own design without any additional programming. The strict separation of development (needed only to implement new components and use (to simulate specific constructions encourages reproducibility of experimental work and reduces the likelihood of error. Following an overview of the framework, we provide some examples of how to use the framework, including the implementation of a simple codec, the specification of communication systems and their simulation.

  7. Relocatable Coastal Modeling System

    Science.gov (United States)

    2016-06-07

    These relationships are stored on a variable-resolution grid (illustrated in figure 1b below) with sampling of 1 degree in deep water (and in data...version is referred to as MODAS2.1, which is now operational at NAVO. The NOMADS interface is being replaced by a system-independent, web -based version...inside the user’s web browser plus Perl CGI scripts which ran on a webserver. This permitted the user to run MODAS (and POM and other modules as they are

  8. CQI reporting strategy for Multi-SIM UEs

    DEFF Research Database (Denmark)

    Buthler, Jakob Lindbjerg; Sørensen, Troels Bundgaard

    UEs which support simultaneous activity from Multiple Active Subscriber Identities (Multi-SIM) has gained popularity within the last years. Such UEs are forced to discard data on one of the SIMs when both try to access the Radio Frequency (RF) interface simultaneously, creating gaps in the data...... transfer. The discarded data due to Multi-SIM gaps, along with channel errors, significantly increase the probability of high latency data subframes. High latency increases the probability of data subframes being discarded. In this paper we present an algorithm with which it is possible to decrease...... the probability of discarded data subframes due to high latency. The algorithm takes advantage of the fact that the connections of each SIMs are unaligned and therefore gaps will only cover some timeslots partially. In such a case, it is possible to recover data using existing error correction coding...

  9. Nephron proximal tubule patterning and corpuscles of Stannius formation are regulated by the sim1a transcription factor and retinoic acid in zebrafish.

    Science.gov (United States)

    Cheng, Christina N; Wingert, Rebecca A

    2015-03-01

    The mechanisms that establish nephron segments are poorly understood. The zebrafish embryonic kidney, or pronephros, is a simplified yet conserved genetic model to study this renal development process because its nephrons contain segments akin to other vertebrates, including the proximal convoluted and straight tubules (PCT, PST). The zebrafish pronephros is also associated with the corpuscles of Stannius (CS), endocrine glands that regulate calcium and phosphate homeostasis, but whose ontogeny from renal progenitors is largely mysterious. Initial patterning of zebrafish renal progenitors in the intermediate mesoderm (IM) involves the formation of rostral and caudal domains, the former being reliant on retinoic acid (RA) signaling, and the latter being repressed by elevated RA levels. Here, using expression profiling to gain new insights into nephrogenesis, we discovered that the gene single minded family bHLH transcription factor 1a (sim1a) is dynamically expressed in the renal progenitors-first marking the caudal domain, then becoming restricted to the proximal segments, and finally exhibiting specific CS expression. In loss of function studies, sim1a knockdown expanded the PCT and abrogated both the PST and CS populations. Conversely, overexpression of sim1a modestly expanded the PST and CS, while it reduced the PCT. These results show that sim1a activity is necessary and partially sufficient to induce PST and CS fates, and suggest that sim1a may inhibit PCT fate and/or negotiate the PCT/PST boundary. Interestingly, the sim1a expression domain in renal progenitors is responsive to altered levels of RA, suggesting that RA regulates sim1a, directly or indirectly, during nephrogenesis. sim1a deficient embryos treated with exogenous RA formed nephrons that were predominantly composed of PCT segments, but lacked the enlarged PST observed in RA treated wild-types, indicating that RA is not sufficient to rescue the PST in the absence of sim1a expression. Alternately

  10. Hydronic distribution system computer model

    Energy Technology Data Exchange (ETDEWEB)

    Andrews, J.W.; Strasser, J.J.

    1994-10-01

    A computer model of a hot-water boiler and its associated hydronic thermal distribution loop has been developed at Brookhaven National Laboratory (BNL). It is intended to be incorporated as a submodel in a comprehensive model of residential-scale thermal distribution systems developed at Lawrence Berkeley. This will give the combined model the capability of modeling forced-air and hydronic distribution systems in the same house using the same supporting software. This report describes the development of the BNL hydronics model, initial results and internal consistency checks, and its intended relationship to the LBL model. A method of interacting with the LBL model that does not require physical integration of the two codes is described. This will provide capability now, with reduced up-front cost, as long as the number of runs required is not large.

  11. Data management system performance modeling

    Science.gov (United States)

    Kiser, Larry M.

    1993-01-01

    This paper discusses analytical techniques that have been used to gain a better understanding of the Space Station Freedom's (SSF's) Data Management System (DMS). The DMS is a complex, distributed, real-time computer system that has been redesigned numerous times. The implications of these redesigns have not been fully analyzed. This paper discusses the advantages and disadvantages for static analytical techniques such as Rate Monotonic Analysis (RMA) and also provides a rationale for dynamic modeling. Factors such as system architecture, processor utilization, bus architecture, queuing, etc. are well suited for analysis with a dynamic model. The significance of performance measures for a real-time system are discussed.

  12. QuakeSim: a Web Service Environment for Productive Investigations with Earth Surface Sensor Data

    Science.gov (United States)

    Parker, J. W.; Donnellan, A.; Granat, R. A.; Lyzenga, G. A.; Glasscoe, M. T.; McLeod, D.; Al-Ghanmi, R.; Pierce, M.; Fox, G.; Grant Ludwig, L.; Rundle, J. B.

    2011-12-01

    The QuakeSim science gateway environment includes a visually rich portal interface, web service access to data and data processing operations, and the QuakeTables ontology-based database of fault models and sensor data. The integrated tools and services are designed to assist investigators by covering the entire earthquake cycle of strain accumulation and release. The Web interface now includes Drupal-based access to diverse and changing content, with new ability to access data and data processing directly from the public page, as well as the traditional project management areas that require password access. The system is designed to make initial browsing of fault models and deformation data particularly engaging for new users. Popular data and data processing include GPS time series with data mining techniques to find anomalies in time and space, experimental forecasting methods based on catalogue seismicity, faulted deformation models (both half-space and finite element), and model-based inversion of sensor data. The fault models include the CGS and UCERF 2.0 faults of California and are easily augmented with self-consistent fault models from other regions. The QuakeTables deformation data include the comprehensive set of UAVSAR interferograms as well as a growing collection of satellite InSAR data.. Fault interaction simulations are also being incorporated in the web environment based on Virtual California. A sample usage scenario is presented which follows an investigation of UAVSAR data from viewing as an overlay in Google Maps, to selection of an area of interest via a polygon tool, to fast extraction of the relevant correlation and phase information from large data files, to a model inversion of fault slip followed by calculation and display of a synthetic model interferogram.

  13. SIMS Studies of Allende Projectiles Fired into Stardust-type Aluminum Foils at 6 km/s

    Science.gov (United States)

    Hoppe, Peter; Stadermann, Frank J.; Stephan, Thomas; Floss, Christine; Leitner, Jan; Marhas, Kuljeet; Horz, Friedrich

    2006-01-01

    We have explored the feasibility of C-, N-, and O-isotopic measurements by NanoSIMS and of elemental abundance determinations by TOF-SIMS on residues of Allende projectiles that impacted Stardust-type aluminum foils in the laboratory at 6 km/s. These investigations are part of a consortium study aimed at providing the foundation for the characterization of matter associated with micro-craters that were produced during the encounter of the Stardust space probe with comet 81P/Wild 2. Eleven experimental impact craters were studied by NanoSIMS and eighteen by TOF-SIMS. Crater sizes were between 3 and 190 microns. The NanoSIMS measurements have shown that the crater morphology has only a minor effect on spatial resolution and on instrumental mass fractionation. The achievable spatial resolution is always better than 200 nm, and C- and O-isotopic ratios can be measured with a precision of several percent at a scale of several 100 nm, the typical size of presolar grains. This clearly demonstrates that presolar matter, provided it survives the impact into the aluminum foil partly intact, is recognizable even if embedded in material of Solar System origin. TOF-SIMS studies are restricted to materials from the crater rim. The element ratios of the major rockforming elements in the Allende projectiles are well characterized by the TOF-SIMS measurements, indicating that fractionation of those elements during impact can be expected to be negligible. This permits information on the type of impactor material to be obtained. For any more detailed assignments to specific chondrite groups, however, information on the abundances of the light elements, especially C, is crucial.

  14. Sr/Ca Sensitivity to Aragonite Saturation in Cultured Coral Measured by NanoSIMS (Invited)

    Science.gov (United States)

    Gagnon, A. C.; Adkins, J. F.; Erez, J.

    2010-12-01

    NanoSIMS was used to identify and com¬positionally characterize the micron scale region of skeletal growth resulting from a short coral culture experiment. Using this technique we quantify the sensitivity of Sr/Ca, a proxy for temperature, to aragonite saturation (Ω), a parameter that varied in the past ocean and is predicted to change with continued ocean acidification. Five adult branches of the surface coral Stylophora sp. were all grown at 25 °C but at different and near constant carbonate ion concentrations, from 180 to 400 µM (pH of 7.9 to 8.5), yielding a two-fold range in calcification rate. Despite the range of Ωs and calcification rates, the average Sr/Ca of nanoSIMS spot measurements corresponding to each condition are within 1.2% (2σ std. dev. of the 5 means). Furthermore, the average Sr/Ca measured in this study agrees with two previous coral culture experiments conducted at the same temperature but where Ω was not controlled. These results suggest carbonate ion concentration is not a complicating factor to Sr/Ca paleothermometry over this range of Ω. Within the framework of a closed system (Rayleigh) model for biomineralization, similar Sr/Ca ratios suggest similar amounts of Rayleigh fractionation. Combined with existing data for low Ω conditions, the extent of Rayleigh fractionation is used to test alternative biomineralization models governing the acid-base chemistry of the calcifying fluid. Assuming that coral use alkalinity pumping to increase local calcifying fluid carbonate ion concentration, we try to understand what controls this pumping. Under most conditions, Sr/Ca ratios are consistent with a scenario where calcifying fluid alkalinity increases until reaching a target pH. However, under conditions of very low seawater Ω, coral cannot pump enough alkalinity to reach the target pH. Below this threshold value, between approximately 1<Ω<2.4, coral pump a maximal and finite amount of alkalinity. The interaction between these rules

  15. Compositional analysis in the nano-regime:A SIMS perspective

    Institute of Scientific and Technical Information of China (English)

    Subhendu Sarkar; Purushottam Chakraborty

    2005-01-01

    A serious problem in secondary ion mass spectrometry (SIMS) analysis is its "matrix effect" that hinders the quantification of a certain species in a sample and consequently, appropriate corrective measures are taken to calibrate the secondary ion currents into respective concentrations for accurate compositional analysis. Use of "calibration standards" is necessary for this purpose. Detection of molecular MCsn+ ions (M-element to be analyzed, n=1, 2, 3,....) under Cs+ ion bombardment is a possible mean to minimize such matrix effect, enabling one to quantify without the need of calibration standards. Our recent studies on MCsn+ molecular ions aim towards the understanding of their formation mechanisms, which are important to know their effects on SIMS quantification.In-depth quantitative analysis is a major strength of SIMS for which 'depth resolution' is of significant relevance. The optimal choice of the impact parameters during SIMS analyses can play an effective role in obtaining data with ultra-high depth resolution. SIMS is possible at depth resolution in the nm or even sub-nm range, with quantifiable data obtained from the top monolayer onwards into the material. With optimized experimental conditions, like extremely low beam current (down to ~10 nA), and low bombarding energy (below 1 keV), ultra-high depth resolution SIMS has enabled interfacial composition analysis of ultra-thin films, quantum wells, heterostructures, etc. and complex low-dimensional structures with high precision and repeatability.

  16. KEY COMPARISONS: Final report: SIM regional comparison of ac-dc voltage transfer difference (SIM.EM.K6a, SIM.EM-K9 and SIM.EM-K11)

    Science.gov (United States)

    Campos, Sara; Filipski, Piotr; Izquierdo, Daniel; Afonso, Edson; Landim, Régis P.; Di Lillo, Lucas; Lipe, Thomas

    2009-01-01

    Three comparisons of ac-dc voltage transfer difference held from January to December 2004 are reported. Six NMIs in the SIM region took part: NRC (Canada), NIST (United States of America), CENAM (Mexico), INTI (Argentina), UTE (Uruguay) and INMETRO (Brazil). The comparisons were proposed to assess the measurement capabilities in ac-dc voltage transfer difference of the NMIs in the SIM region. The test points were selected to link the results with the equivalent CCEM Key Comparisons, through three NMIs participating in both SIM and CCEM key comparisons. Additionally, a SIM.EM-Supplementary comparison was proposed, in support of the SIM NMIs' power/energy meter calibration capabilities. One technical protocol and one travelling standard were used, to economize on time and resources. The report shows the degree of equivalence in the SIM region and also the degree of equivalence with the corresponding CCEM reference value. The results of all participants support the values and uncertainties of the applicable CMC entries for ac-dc voltage transfer difference in the Key Comparison Database held at the BIPM. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCEM, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA).

  17. Characterization of plasma-functionalized surfaces by means of Tof-SIMS and multivariate analysis methods; Charakterisierung von plasmafunktionalisierten Oberflaechen mittels ToF-SIMS und multivariaten Analysemethoden

    Energy Technology Data Exchange (ETDEWEB)

    Gradowski, M. von

    2006-11-13

    The basic principles and opportunities of surface characterisation of selected functionalised samples via ToF-SIMS (time-of-flight secondary ion mass spectrometry) are presented. One major focus of the project was the investigation of non-cohesive surface layers which could exhibit either domain like structure or well defined single functionalised surfaces. By means of ToF-SIMS with the ability of displaying the lateral distribution of surface fragments information on the structure and surface density of specific fragments on the investigated film can be obtained. The combination of the ToF-SIMS experiment with a multivariate algorithm (partial least squares, PLS) provides an interesting opportunity to quantitatively determine surface properties such as elemental and molecular concentrations. Due to the fact that the ToF-SIMS spectrum consist of a huge amount of intensities, a single one-dimensional correlation (e.g. CF{sub 3} fragment intensity <-{yields} CF{sub 3} concentration) would disregard the rest of the spectral information. The large number of fragment intensities in the spectrum is representative for the chemical structure of the analysed surface. Therefore, it is crucial to consider this total information for the quantification of surface properties (element concentration, water contact angle etc.). Furthermore, this method allows the determination of surface properties with a lateral resolution of a few microns only. This can be used for chemically structured surfaces which for many applications show micrometer sized surface structures. Finally, a successful application of the multivariate models is presented for samples from the biological and medical area. Human fibroblasts and pancreas cells have been cultivated on plasma functionalised surfaces in order to study the influence of the functionalisation on the cell growth. The samples have been covered by TEM grids with meshes in the {mu}m range before the plasma treatment to generate structured

  18. MixSim : An R Package for Simulating Data to Study Performance of Clustering Algorithms

    Directory of Open Access Journals (Sweden)

    Volodymyr Melnykov

    2012-11-01

    Full Text Available The R package MixSim is a new tool that allows simulating mixtures of Gaussian distributions with different levels of overlap between mixture components. Pairwise overlap, defined as a sum of two misclassification probabilities, measures the degree of interaction between components and can be readily employed to control the clustering complexity of datasets simulated from mixtures. These datasets can then be used for systematic performance investigation of clustering and finite mixture modeling algorithms. Among other capabilities of MixSim, there are computing the exact overlap for Gaussian mixtures, simulating Gaussian and non-Gaussian data, simulating outliers and noise variables, calculating various measures of agreement between two partitionings, and constructing parallel distribution plots for the graphical display of finite mixture models. All features of the package are illustrated in great detail. The utility of the package is highlighted through a small comparison study of several popular clustering algorithms.

  19. Effects of uncertainties in simulations of extragalactic UHECR propagation, using CRPropa and SimProp

    CERN Document Server

    Batista, Rafael Alves; di Matteo, Armando; van Vliet, Arjen; Walz, David

    2015-01-01

    The results of simulations of the extragalactic propagation of ultra-high energy cosmic rays (UHECRs) have intrinsic uncertainties due to poorly known physical quantities and approximations used in the codes. We quantify the uncertainties in the simulated UHECR spectrum and composition due to different models for the extragalactic background light (EBL), different photodisintegration setups, approximations concerning photopion production and the use of different simulation codes. We discuss the results for several representative source scenarios with proton, nitrogen or iron at injection. For this purpose we used SimProp and CRPropa, two publicly available codes for Monte Carlo simulations of UHECR propagation. CRPropa is a detailed and extensive simulation code, while SimProp aims to achieve acceptable results using a simpler code. We show that especially the choices for the EBL model and the photodisintegration setup can have a considerable impact on the simulated UHECR spectrum and composition.

  20. National Energy Outlook Modelling System

    Energy Technology Data Exchange (ETDEWEB)

    Volkers, C.M. [ECN Policy Studies, Petten (Netherlands)

    2013-12-15

    For over 20 years, the Energy research Centre of the Netherlands (ECN) has been developing the National Energy Outlook Modelling System (NEOMS) for Energy projections and policy evaluations. NEOMS enables 12 energy models of ECN to exchange data and produce consistent and detailed results.

  1. ABSTRACT MODELS FOR SYSTEM VIRTUALIZATION

    Directory of Open Access Journals (Sweden)

    M. G. Koveshnikov

    2015-05-01

    Full Text Available The paper is dedicated to issues of system objects securing (system files and user system or application configuration files against unauthorized access including denial of service attacks. We have suggested the method and developed abstract system virtualization models, which are used toresearch attack scenarios for different virtualization modes. Estimation for system tools virtualization technology effectiveness is given. Suggested technology is based on redirection of access requests to system objects shared among access subjects. Whole and partial system virtualization modes have been modeled. The difference between them is the following: in the whole virtualization mode all copies of access system objects are created whereon subjects’ requests are redirected including corresponding application objects;in the partial virtualization mode corresponding copies are created only for part of a system, for example, only system objects for applications. Alternative solutions effectiveness is valued relating to different attack scenarios. We consider proprietary and approved technical solution which implements system virtualization method for Microsoft Windows OS family. Administrative simplicity and capabilities of correspondingly designed system objects security tools are illustrated on this example. Practical significance of the suggested security method has been confirmed.

  2. Aerodynamic and Mechanical System Modelling

    DEFF Research Database (Denmark)

    Jørgensen, Martin Felix

    This thesis deals with mechanical multibody-systems applied to the drivetrain of a 500 kW wind turbine. Particular focus has been on gearbox modelling of wind turbines. The main part of the present project involved programming multibody systems to investigate the connection between forces, moments...

  3. Experimental Modeling of Dynamic Systems

    DEFF Research Database (Denmark)

    Knudsen, Morten Haack

    2006-01-01

    An engineering course, Simulation and Experimental Modeling, has been developed that is based on a method for direct estimation of physical parameters in dynamic systems. Compared with classical system identification, the method appears to be easier to understand, apply, and combine with physical...

  4. Generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB.

    Science.gov (United States)

    Lee, Leng-Feng; Umberger, Brian R

    2016-01-01

    Computer modeling, simulation and optimization are powerful tools that have seen increased use in biomechanics research. Dynamic optimizations can be categorized as either data-tracking or predictive problems. The data-tracking approach has been used extensively to address human movement problems of clinical relevance. The predictive approach also holds great promise, but has seen limited use in clinical applications. Enhanced software tools would facilitate the application of predictive musculoskeletal simulations to clinically-relevant research. The open-source software OpenSim provides tools for generating tracking simulations but not predictive simulations. However, OpenSim includes an extensive application programming interface that permits extending its capabilities with scripting languages such as MATLAB. In the work presented here, we combine the computational tools provided by MATLAB with the musculoskeletal modeling capabilities of OpenSim to create a framework for generating predictive simulations of musculoskeletal movement based on direct collocation optimal control techniques. In many cases, the direct collocation approach can be used to solve optimal control problems considerably faster than traditional shooting methods. Cyclical and discrete movement problems were solved using a simple 1 degree of freedom musculoskeletal model and a model of the human lower limb, respectively. The problems could be solved in reasonable amounts of time (several seconds to 1-2 hours) using the open-source IPOPT solver. The problems could also be solved using the fmincon solver that is included with MATLAB, but the computation times were excessively long for all but the smallest of problems. The performance advantage for IPOPT was derived primarily by exploiting sparsity in the constraints Jacobian. The framework presented here provides a powerful and flexible approach for generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB. This

  5. Generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB

    Directory of Open Access Journals (Sweden)

    Leng-Feng Lee

    2016-01-01

    Full Text Available Computer modeling, simulation and optimization are powerful tools that have seen increased use in biomechanics research. Dynamic optimizations can be categorized as either data-tracking or predictive problems. The data-tracking approach has been used extensively to address human movement problems of clinical relevance. The predictive approach also holds great promise, but has seen limited use in clinical applications. Enhanced software tools would facilitate the application of predictive musculoskeletal simulations to clinically-relevant research. The open-source software OpenSim provides tools for generating tracking simulations but not predictive simulations. However, OpenSim includes an extensive application programming interface that permits extending its capabilities with scripting languages such as MATLAB. In the work presented here, we combine the computational tools provided by MATLAB with the musculoskeletal modeling capabilities of OpenSim to create a framework for generating predictive simulations of musculoskeletal movement based on direct collocation optimal control techniques. In many cases, the direct collocation approach can be used to solve optimal control problems considerably faster than traditional shooting methods. Cyclical and discrete movement problems were solved using a simple 1 degree of freedom musculoskeletal model and a model of the human lower limb, respectively. The problems could be solved in reasonable amounts of time (several seconds to 1–2 hours using the open-source IPOPT solver. The problems could also be solved using the fmincon solver that is included with MATLAB, but the computation times were excessively long for all but the smallest of problems. The performance advantage for IPOPT was derived primarily by exploiting sparsity in the constraints Jacobian. The framework presented here provides a powerful and flexible approach for generating optimal control simulations of musculoskeletal movement using

  6. Evaluation of the airway of the SimMan full-scale patient simulator

    DEFF Research Database (Denmark)

    Hesselfeldt, R; Kristensen, M S; Rasmussen, L S

    2005-01-01

    SimMan is a full-scale patient simulator, capable of simulating normal and pathological airways. The performance of SimMan has never been critically evaluated.......SimMan is a full-scale patient simulator, capable of simulating normal and pathological airways. The performance of SimMan has never been critically evaluated....

  7. An extensible analysable system model

    DEFF Research Database (Denmark)

    Probst, Christian W.; Hansen, Rene Rydhof

    2008-01-01

    , this does not hold for real physical systems. Approaches such as threat modelling try to target the formalisation of the real-world domain, but still are far from the rigid techniques available in security research. Many currently available approaches to assurance of critical infrastructure security...... allows for easy development of analyses for the abstracted systems. We briefly present one application of our approach, namely the analysis of systems for potential insider threats....

  8. Real time wind farm emulation using SimWindFarm toolbox

    Science.gov (United States)

    Topor, Marcel

    2016-06-01

    This paper presents a wind farm emulation solution using an open source Matlab/Simulink toolbox and the National Instruments cRIO platform. This work is based on the Aeolus SimWindFarm (SWF) toolbox models developed at Aalborg university, Denmark. Using the Matlab Simulink models developed in SWF, the modeling code can be exported to a real time model using the NI Veristand model framework and the resulting code is integrated as a hardware in the loop control on the NI 9068 platform.

  9. Modeling Multi-Level Systems

    CERN Document Server

    Iordache, Octavian

    2011-01-01

    This book is devoted to modeling of multi-level complex systems, a challenging domain for engineers, researchers and entrepreneurs, confronted with the transition from learning and adaptability to evolvability and autonomy for technologies, devices and problem solving methods. Chapter 1 introduces the multi-scale and multi-level systems and highlights their presence in different domains of science and technology. Methodologies as, random systems, non-Archimedean analysis, category theory and specific techniques as model categorification and integrative closure, are presented in chapter 2. Chapters 3 and 4 describe polystochastic models, PSM, and their developments. Categorical formulation of integrative closure offers the general PSM framework which serves as a flexible guideline for a large variety of multi-level modeling problems. Focusing on chemical engineering, pharmaceutical and environmental case studies, the chapters 5 to 8 analyze mixing, turbulent dispersion and entropy production for multi-scale sy...

  10. SIMS as a new methodology to depth profile helium in as-implanted and annealed pure bcc metals?

    Science.gov (United States)

    Gorondy-Novak, S.; Jomard, F.; Prima, F.; Lefaix-Jeuland, H.

    2017-05-01

    Reliable He profiles are highly desirable for better understanding helium behavior in materials for future nuclear applications. Recently, Secondary Ions Mass Spectrometry (SIMS) allowed the characterization of helium distribution in as-implanted metallic systems. The Cs+ primary ion beam coupled with CsHe+ molecular detector appeared to be a promising technique which overcomes the very high He ionization potential. In this study, 4He depth profiles in pure body centered cubic (bcc) metals (V, Fe, Ta, Nb and Mo) as-implanted and annealed, were obtained by SIMS. All as-implanted samples exhibited a projected range of around 200 nm, in agreement with SRIM theoretical calculations. After annealing treatment, SIMS measurements evidenced the evolution of helium depth profile with temperature. The latter SIMS results were compared to the helium bubble distribution obtained by Transmission Electron Microscopy (TEM). This study confirmed the great potential of this experimental procedure as a He-depth profiling technique in bcc metals. Indeed, the methodology described in this work could be extended to other materials including metallic and non-metallic compounds. Nevertheless, the quantification of helium concentration after annealing treatment by SIMS remains uncertain probably due to the non-uniform ionization efficiency in samples containing large bubbles.

  11. SIMS as a new methodology to depth profile helium in as-implanted and annealed pure bcc metals?

    Energy Technology Data Exchange (ETDEWEB)

    Gorondy-Novak, S. [CEA, DEN, Service de Recherches de Métallurgie Physique, Université Paris-Saclay, F-91191 Gif-sur-Yvette (France); Jomard, F. [Groupe d' Etude de la Matière Condensée, CNRS, UVSQ, 45 avenue des Etats-Unis, 78035 Versailles cedex (France); Prima, F. [PSL Research University, Chimie ParisTech – CNRS, Institut de Recherche de Chimie Paris, 75005 Paris (France); Lefaix-Jeuland, H., E-mail: helene.lefaix@cea.fr [CEA, DEN, Service de Recherches de Métallurgie Physique, Université Paris-Saclay, F-91191 Gif-sur-Yvette (France)

    2017-05-01

    Reliable He profiles are highly desirable for better understanding helium behavior in materials for future nuclear applications. Recently, Secondary Ions Mass Spectrometry (SIMS) allowed the characterization of helium distribution in as-implanted metallic systems. The Cs{sup +} primary ion beam coupled with CsHe{sup +} molecular detector appeared to be a promising technique which overcomes the very high He ionization potential. In this study, {sup 4}He depth profiles in pure body centered cubic (bcc) metals (V, Fe, Ta, Nb and Mo) as-implanted and annealed, were obtained by SIMS. All as-implanted samples exhibited a projected range of around 200 nm, in agreement with SRIM theoretical calculations. After annealing treatment, SIMS measurements evidenced the evolution of helium depth profile with temperature. The latter SIMS results were compared to the helium bubble distribution obtained by Transmission Electron Microscopy (TEM). This study confirmed the great potential of this experimental procedure as a He-depth profiling technique in bcc metals. Indeed, the methodology described in this work could be extended to other materials including metallic and non-metallic compounds. Nevertheless, the quantification of helium concentration after annealing treatment by SIMS remains uncertain probably due to the non-uniform ionization efficiency in samples containing large bubbles.

  12. CaPaSIM statement of methods

    Science.gov (United States)

    Jönsson, Per-Anders; Stichel, Sebastian; Nilsson, Cecilia

    2015-03-01

    In the present paper, the method for calculation of the dynamic pantograph-catenary interaction developed by the Royal Institute of Technology and the Swedish National Rail/Road administration (Trafikverket) is described and the results of the benchmark exercise are discussed. The method is based on the commercial Finite Element software ANSYS. The geometry of the catenary and pantograph is defined in a pre-processor, BARTRAD, developed by Trafikverket, and is automatically translated into an ANSYS model. Basically all types of catenary systems could be handled as well as different types of non-linearity. There are both 2D and 3D versions of the code existing. The results achieved in this first stage of the benchmark are well in line with the results from the other partners in the benchmark study

  13. Depth profiling of fingerprint and ink signals by SIMS and MeV SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Bailey, M.J., E-mail: m.bailey@surrey.ac.u [University of Surrey Ion Beam Centre, Surrey GU2 7XH (United Kingdom); Jones, B.N. [University of Surrey Ion Beam Centre, Surrey GU2 7XH (United Kingdom); Hinder, S.; Watts, J. [Surface Analysis Laboratory, University of Surrey, GU2 7XH (United Kingdom); Bleay, S. [Home Office Scientific Development Branch, St. Albans (United Kingdom); Webb, R.P. [University of Surrey Ion Beam Centre, Surrey GU2 7XH (United Kingdom)

    2010-06-15

    Police institutions currently have no analytical method of knowing whether a fingerprint was deposited before or after the document was written or printed. The suitability of using MeV secondary ion mass spectrometry (i.e. SIMS with an MeV ion beam) to determine the order in which a fingerprint and written text were deposited on paper was therefore investigated. A 10 MeV O{sup 4+} beam was used to generate secondary ions from the surface of the samples and to map the molecular fragments from doped fingerprints and inks on paper. The images obtained and the sputtering behaviour of the samples was found to be indicative of the sequence of ink and fingerprint deposits.

  14. Distribution system modeling and analysis

    CERN Document Server

    Kersting, William H

    2002-01-01

    For decades, distribution engineers did not have the sophisticated tools developed for analyzing transmission systems-often they had only their instincts. Things have changed, and we now have computer programs that allow engineers to simulate, analyze, and optimize distribution systems. Powerful as these programs are, however, without a real understanding of the operating characteristics of a distribution system, engineers using the programs can easily make serious errors in their designs and operating procedures.Distribution System Modeling and Analysis helps prevent those errors. It gives re

  15. Stirling Engine Dynamic System Modeling

    Science.gov (United States)

    Nakis, Christopher G.

    2004-01-01

    The Thermo-Mechanical systems branch at the Glenn Research Center focuses a large amount time on Stirling engines. These engines will be used on missions where solar power is inefficient, especially in deep space. I work with Tim Regan and Ed Lewandowski who are currently developing and validating a mathematical model for the Stirling engines. This model incorporates all aspects of the system including, mechanical, electrical and thermodynamic components. Modeling is done through Simplorer, a program capable of running simulations of the model. Once created and then proven to be accurate, a model is used for developing new ideas for engine design. My largest specific project involves varying key parameters in the model and quantifying the results. This can all be done relatively trouble-free with the help of Simplorer. Once the model is complete, Simplorer will do all the necessary calculations. The more complicated part of this project is determining which parameters to vary. Finding key parameters depends on the potential for a value to be independently altered in the design. For example, a change in one dimension may lead to a proportional change to the rest of the model, and no real progress is made. Also, the ability for a changed value to have a substantial impact on the outputs of the system is important. Results will be condensed into graphs and tables with the purpose of better communication and understanding of the data. With the changing of these parameters, a more optimal design can be created without having to purchase or build any models. Also, hours and hours of results can be simulated in minutes. In the long run, using mathematical models can save time and money. Along with this project, I have many other smaller assignments throughout the summer. My main goal is to assist in the processes of model development, validation and testing.

  16. SIMS characterization of segregation in InAs/GaAs heterostructures

    Energy Technology Data Exchange (ETDEWEB)

    Gallardo, S. [Electrical Engineer Department, Centro de Investigacion y de Estudios Avanzados del IPN, Apartado postal 14470, Mexico, D.F. (Mexico); Kudriatsev, Y. [Electrical Engineer Department, Centro de Investigacion y de Estudios Avanzados del IPN, Apartado postal 14470, Mexico, D.F. (Mexico)], E-mail: yuriyk@cinvestav.mx; Villegas, A.; Ramirez, G.; Asomoza, R. [Electrical Engineer Department, Centro de Investigacion y de Estudios Avanzados del IPN, Apartado postal 14470, Mexico, D.F. (Mexico); Cruz-Hernandez, E.; Rojas-Ramirez, J.S.; Lopez-Lopez, M. [Physics Department, Centro de Investigacion y de Estudios Avanzados del IPN, Apartado postal 14470, Mexico, D.F. (Mexico)

    2008-12-15

    We performed a detailed study of in situ indium segregation in InAs/GaAs heterostructures during conventional MBE growth process. A set of heterostructures grown under different substrate temperatures was tested. We used in the study a recently developed equation for SIMS's Depth Resolution Function (DRF), which included Recoil Implantation, Cascade Mixing and Sputtering Induced Roughness phenomena (RMR model). Segregation process was included in this DRF as an exponentially increasing function. Then we found from experimental SIMS depth profiles segregation parameters for different growth temperatures and the energy activation for the segregation process. It was found equal to 0.27 eV that is close to values published in literature. A segregation free regime of the growth process was developed experimentally.

  17. SimTrack: A compact c++ code for particle orbit and spin tracking in accelerators

    Science.gov (United States)

    Luo, Yun

    2015-11-01

    SimTrack is a compact c++ code of 6-d symplectic element-by-element particle tracking in accelerators originally designed for head-on beam-beam compensation simulation studies in the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory. It provides a 6-d symplectic orbit tracking with the 4th order symplectic integration for magnet elements and the 6-d symplectic synchro-beam map for beam-beam interaction. Since its inception in 2009, SimTrack has been intensively used for dynamic aperture calculations with beam-beam interaction for RHIC. Recently, proton spin tracking and electron energy loss due to synchrotron radiation were added. In this paper, I will present the code architecture, physics models, and some selected examples of its applications to RHIC and a future electron-ion collider design eRHIC.

  18. SimTrack: A compact c++ library for particle orbit and spin tracking in accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Luo, Yun [Brookhaven National Laboratory (BNL), Upton, NY (United States)

    2015-06-24

    SimTrack is a compact c++ library of 6-d symplectic element-by-element particle tracking in accelerators originally designed for head-on beam-beam compensation simulation studies in the Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory. It provides a 6-d symplectic orbit tracking with the 4th order symplectic integration for magnet elements and the 6-d symplectic synchro-beam map for beam-beam interaction. Since its inception in 2009, SimTrack has been intensively used for dynamic aperture calculations with beam-beam interaction for RHIC. Recently, proton spin tracking and electron energy loss due to synchrotron radiation were added. In this article, I will present the code architecture, physics models, and some selected examples of its applications to RHIC and a future electron-ion collider design eRHIC.

  19. Kinetic Modeling of Biological Systems

    Energy Technology Data Exchange (ETDEWEB)

    Resat, Haluk; Petzold, Linda; Pettigrew, Michel F.

    2009-04-21

    The dynamics of how its constituent components interact define the spatio-temporal response of a natural system to stimuli. Modeling the kinetics of the processes that represent a biophysical system has long been pursued with the aim of improving our understanding of the studied system. Due to the unique properties of biological systems, in addition to the usual difficulties faced in modeling the dynamics of physical or chemical systems, biological simulations encounter difficulties that result from intrinsic multiscale and stochastic nature of the biological processes. This chapter discusses the implications for simulation of models involving interacting species with very low copy numbers, which often occur in biological systems and give rise to significant relative fluctuations. The conditions necessitating the use of stochastic kinetic simulation methods and the mathematical foundations of the stochastic simulation algorithms are presented. How the well-organized structural hierarchies often seen in biological systems can lead to multiscale problems, and possible ways to address the encountered computational difficulties are discussed. We present the details of the existing kinetic simulation methods, and discuss their strengths and shortcomings. A list of the publicly available kinetic simulation tools and our reflections for future prospects are also provided.

  20. Kaiser Permanente-Sandia National Health Care Model: Phase 1 prototype final report. Part 2 -- Domain analysis

    Energy Technology Data Exchange (ETDEWEB)

    Edwards, D.; Yoshimura, A.; Butler, D.; Judson, R.; Mason, W.; Napolitano, L.; Mariano, R. [Sandia National Labs., Livermore, CA (United States); Eddy, D.; Schlessinger, L. [Kaiser Permanente, Pasadena, CA (United States)

    1996-11-01

    This report describes the results of a Cooperative Research and Development Agreement between Sandia National Laboratories and Kaiser Permanente Southern California to develop a prototype computer model of Kaiser Permanente`s health care delivery system. As a discrete event simulation, SimHCO models for each of 100,000 patients the progression of disease, individual resource usage, and patient choices in a competitive environment. SimHCO is implemented in the object-oriented programming language C{sup 2}, stressing reusable knowledge and reusable software components. The versioned implementation of SimHCO showed that the object-oriented framework allows the program to grow in complexity in an incremental way. Furthermore, timing calculations showed that SimHCO runs in a reasonable time on typical workstations, and that a second phase model will scale proportionally and run within the system constraints of contemporary computer technology.

  1. Understanding Elementary Astronomy by Making Drawing-Based Models

    NARCIS (Netherlands)

    van Joolingen, W. R.; Aukes, Annika V A; Gijlers, H.; Bollen, L.

    2015-01-01

    Modeling is an important approach in the teaching and learning of science. In this study, we attempt to bring modeling within the reach of young children by creating the SimSketch modeling system, which is based on freehand drawings that can be turned into simulations. This system was used by 247 ch

  2. Understanding Elementary Astronomy by Making Drawing-Based Models

    NARCIS (Netherlands)

    van Joolingen, W. R.; Aukes, Annika V A; Gijlers, H.; Bollen, L.

    2015-01-01

    Modeling is an important approach in the teaching and learning of science. In this study, we attempt to bring modeling within the reach of young children by creating the SimSketch modeling system, which is based on freehand drawings that can be turned into simulations. This system was used by 247 ch

  3. Executive Information Systems' Multidimensional Models

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available Executive Information Systems are design to improve the quality of strategic level of management in organization through a new type of technology and several techniques for extracting, transforming, processing, integrating and presenting data in such a way that the organizational knowledge filters can easily associate with this data and turn it into information for the organization. These technologies are known as Business Intelligence Tools. But in order to build analytic reports for Executive Information Systems (EIS in an organization we need to design a multidimensional model based on the business model from the organization. This paper presents some multidimensional models that can be used in EIS development and propose a new model that is suitable for strategic business requests.

  4. Numerical Modeling of Microelectrochemical Systems

    DEFF Research Database (Denmark)

    Adesokan, Bolaji James

    for the reactants in the bulk electrolyte that are traveling waves. The first paper presents the mathematical model which describes an electrochemical system and simulates an electroanalytical technique called cyclic voltammetry. The model is governed by a system of advection–diffusion equations with a nonlinear...... reaction term at the boundary. We investigate the effect of flow rates, scan rates, and concentration on the cyclic voltammetry. We establish that high flow rates lead to the reduced hysteresis in the cyclic voltammetry curves and increasing scan rates lead to more pronounced current peaks. The final part...... of the paper shows that the response current in a cyclic voltammetry increases proportionally to the electrolyte concentration. In the second paper we present an experiment of an electrochemical system in a microfluidc system and compare the result to the numerical solutions. We investigate how the position...

  5. NanoSIMS for Biological Applications: Current Practices and Analyses

    Energy Technology Data Exchange (ETDEWEB)

    Dunn, Jamie R.; Renslow, Ryan S.; Cliff, John B.; Anderton, Christopher R.

    2017-09-27

    Secondary ion mass spectrometry (SIMS) has become an increasingly utilized tool in biologically-relevant studies. Of these, high lateral resolution methodologies using the NanoSIMS 50/50L have been especially powerful within many biological fields over the past decade. Here, we provide a review of this technology, sample preparation and analysis considerations, examples of recent biological studies, data analysis, and current outlooks. Specifically, we offer an overview of SIMS and development of the NanoSIMS. We describe the major experimental factors that should be considered prior to NanoSIMS analysis and then provide information on best practices for data analysis and image generation, which includes an in-depth discussion of appropriate colormaps. Additionally, we provide an open-source method for data representation that allows simultaneous visualization of secondary electron and ion information within a single image. Finally, we present a perspective on the future of this technology and where we think it will have the greatest impact in near future.

  6. Predicting Effects of Climate Change on Habitat Suitability of Red Spruce (Picea rubens Sarg. in the Southern Appalachian Mountains of the USA: Understanding Complex Systems Mechanisms through Modeling

    Directory of Open Access Journals (Sweden)

    Kyung Ah Koo

    2015-04-01

    Full Text Available Alpine, subalpine and boreal tree species, of low genetic diversity and adapted to low optimal temperatures, are vulnerable to the warming effects of global climate change. The accurate prediction of these species’ distributions in response to climate change is critical for effective planning and management. The goal of this research is to predict climate change effects on the distribution of red spruce (Picea rubens Sarg. in the Great Smoky Mountains National Park (GSMNP, eastern USA. Climate change is, however, conflated with other environmental factors, making its assessment a complex systems problem in which indirect effects are significant in causality. Predictions were made by linking a tree growth simulation model, red spruce growth model (ARIM.SIM, to a GIS spatial model, red spruce habitat model (ARIM.HAB. ARIM.SIM quantifies direct and indirect interactions between red spruce and its growth factors, revealing the latter to be dominant. ARIM.HAB spatially distributes the ARIM.SIM simulations under the assumption that greater growth reflects higher probabilities of presence. ARIM.HAB predicts the future habitat suitability of red spruce based on growth predictions of ARIM.SIM under climate change and three air pollution scenarios: 10% increase, no change and 10% decrease. Results show that suitable habitats shrink most when air pollution increases. Higher temperatures cause losses of most low-elevation habitats. Increased precipitation and air pollution produce acid rain, which causes loss of both low- and high-elevation habitats. The general prediction is that climate change will cause contraction of red spruce habitats at both lower and higher elevations in GSMNP, and the effects will be exacerbated by increased air pollution. These predictions provide valuable information for understanding potential impacts of global climate change on the spatiotemporal distribution of red spruce habitats in GSMNP.

  7. The Way To a Double Degenerate: $\\sim15-20$ per cent of $1M_{\\odot} \\le M \\le 8M_{\\odot}$ Stars have a $M>1M_{\\odot}$ Companion

    CERN Document Server

    Klein, Ygal

    2016-01-01

    We find that $\\sim 15-20$ per cent of A-type stars or red giants are bound with a massive companion ($M_{\\rm secondary} > 1M_{\\odot}$) in an intermediate wide orbit ($0.5systems (WODDs) within $\\lesssim10\\mbox{ Gyr}$ implying that $\\sim10$ per cent of white dwarfs (WDs) are expected to be part of a WODD with a lighter WD companion. These findings are based on an analysis of previous adaptive optics observations of A-type stars and radial velocity measurements of red giants and shed light on the claimed discrepancy between the seemingly high multiplicity function of stars and the rather low number of detected double degenerates. We expect that GAIA will find $\\sim 10$ new WODDs within $20\\mbox{ pc}$ from the sun. These results put a stringent constraint on the collision model of type Ia supernovae in which triple stellar systems that include a WODD as the inner binary are required to be abundant.

  8. Quark Model and multiquark system

    CERN Document Server

    da Silva, Cristiane Oldoni

    2010-01-01

    The discovery of many particles, especially in the 50's, when the firsts accelerators appeared, caused the searching for a model that would describe in a simple form the whole of known particles. The Quark Model, based in the mathematical structures of group theory, provided in the beginning of the 60's a simplified description of hadronic matter already known, proposing that three particles, called quarks, would originate all the observed hadrons. This model was able to preview the existence of particles that were later detected, confirming its consistency. Extensions of the Quark Model were made in the beginning of the 70's, focusing in describing observed particles that were excited states of the fundamental particles and others that presented new quantum numbers (flavors). Recently, exotic states as tetraquarks and pentaquarks types, also called multiquarks systems, previewed by the model, were observed, what renewed the interest in the way as quarks are confined inside the hadrons. In this article we pre...

  9. GENERIC model for multiphase systems

    NARCIS (Netherlands)

    Sagis, L.M.C.

    2010-01-01

    GENERIC is a nonequilibrium thermodynamic formalism in which the dynamic behavior of a system is described by a single compact equation involving two types of brackets: a Poisson bracket and a dissipative bracket. This formalism has proved to be a very powerful instrument to model the dynamic behavi

  10. 某爆破扫雷器电液伺服系统的神经网络建模%Modelling of the Electrohydraulic System of a Certain Demolition Mine Sweeper Based on Neural Network

    Institute of Scientific and Technical Information of China (English)

    钱进; 陈机林

    2011-01-01

    利用Matlab2010a中Simulink系统的SimHydraulics模块,建立某爆破扫雷器电液伺服系统的模型,在以PRMS为输入信号的基础上研究LM-BP神经网络的辨识问题,对此非线性系统进行离线辨识实验.实验结果验证了该建模方法的有效性.%A model of the electrohydraulic system of a certain demolition mine sweeper was built based on the SimHydraulic toolbox of Simulink analysis system in Matlab2010a. On the basis of adopting PRMS as input signal, the model identification based on LM-BP neural network was researched. An experiment of offline identification was made in this nonlinear system. The results validate its validity.

  11. Mobile Element Reservoir Mass Balance on Mars: New SIMS and EMP Data from Lonar and Mistastin Craters

    Science.gov (United States)

    Newsom, H. E.; Hagerty, J. J.; Shearer, C. W.

    2002-01-01

    New SIMS data for mobile elements in Lonar Crater clay minerals are remarkably similar to data for alteration material in the Lafayette Mars meteorite. This work strongly supports the use of terrestrial analogues for Mars, including a new mass balance model for mobile elements through time. Additional information is contained in the original extended abstract.

  12. Mobile Element Reservoir Mass Balance on Mars: New SIMS and EMP Data from Lonar and Mistastin Craters

    Science.gov (United States)

    Newsom, H. E.; Hagerty, J. J.; Shearer, C. W.

    2002-01-01

    New SIMS data for mobile elements in Lonar Crater clay minerals are remarkably similar to data for alteration material in the Lafayette Mars meteorite. This work strongly supports the use of terrestrial analogues for Mars, including a new mass balance model for mobile elements through time. Additional information is contained in the original extended abstract.

  13. Visualizing Microbial Biogeochemistry: NanoSIMS and Stable Isotope Probing (Invited)

    Science.gov (United States)

    Pett-Ridge, J.; Weber, P. K.

    2009-12-01

    Linking phylogenetic information to function in microbial communities is a key challenge for microbial ecology. Isotope-labeling experiments provide a useful means to investigate the ecophysiology of microbial populations and cells in the environment and allow measurement of nutrient transfers between cell types, symbionts and consortia. The combination of Nano-Secondary Ion Mass Spectrometry (NanoSIMS) analysis, in situ labeling and high resolution microscopy allows isotopic analysis to be linked to phylogeny and morphology and holds great promise for fine-scale studies of microbial systems. In NanoSIMS analysis, samples are sputtered with an energetic primary beam (Cs+, O-) liberating secondary ions that are separated by the mass spectrometer and detected in a suite of electron multipliers. Five isotopic species may be analyzed concurrently with spatial resolution as fine as 50nm. A high sensitivity isotope ratio ‘map’ can then be generated for the analyzed area. NanoSIMS images of 13C, 15N and Mo (a nitrogenase co-factor) localization in diazotrophic cyanobacteria show how cells differentially allocate resources within filaments and allow calculation of nutrient uptake rates on a cell by cell basis. Images of AM fungal hyphae-root and cyanobacteria-rhizobia associations indicate the mobilization and sharing (stealing?) of newly fixed C and N. In a related technique, “El-FISH”, stable isotope labeled biomass is probed with oligonucleotide-elemental labels and then imaged by NanoSIMS. In microbial consortia and cyanobacterial mats, this technique helps link microbial structure and function simultaneously even in systems with unknown and uncultivated microbes. Finally, the combination of re-engineered universal 16S oligonucleotide microarrays with NanoSIMS analyses may allow microbial identity to be linked to functional roles in complex systems such as mats and cellulose degrading hindgut communities. These newly developed methods provide correlated

  14. Intercalibration of FTIR and SIMS for Hydrogen Measurements in Garnets

    Science.gov (United States)

    Huang, Y.; Rossman, G.; Guan, Y.; Ma, C.

    2008-12-01

    The importance of understanding the hydrogen incorporated in nominally anhydrous minerals (NAMs) that influences their physical and chemical properties significantly is well accepted, however, quantitatively experimental constraints between hydrogen concentration and physical and chemical properties are only meaningful if hydrogen concentration can be accurately determined. Fourier Transform Infrared Spectroscopy (FTIR) may be the most powerful technique since it provides information about both bulk concentration and local bonding environments, while Secondary Ion Mass Spec-trometry (SIMS) has held promise as an ideal method for hydrogen analyses for its advantages of high spatial resolution and insensitivity to crystal orientation. Great efforts have been made to establish experimental standards for these two techniques since they have no rigorous self-calibration. We here present new Fourier Transform Infrared Spectroscopy (FTIR) and Secondary Ion Mass Spectrometry (SIMS) analyses of 1H in 11 natural garnets (grossular, spessartite and pyrope). This set of garnets extends to a wider range of H2O contents (~4 to 6790 wt. ppm H2O) than previous studies and can be more reliable if more garnets can be investigated. We routinely achieve a less than 5 ppm by weight H2O with high vacuum quality, the use of a Cs+ primary beam, and carefully prepared samples using a resin-free mounting technique (described in Aubaud C. et al., 2007. Intercalibration of FTIR and SIMS for hydrogen measurements in glasses and nominally anhydrous minerals. American Mineralogist, 92, 811-828). Although some scatter is observed, the straight line with a slope of 0.0722 defined by all garnets in a plot of (H)FTIR vs. (H+/Si+)SIMS* (SiO2)EMP suggests small matrix effects, while some previous efforts demonstrated the existence of such matrix effects. Discrepancies between FTIR and SIMS measurements can be partially distributed to the impurities, which have different hydrogen concentration as the

  15. Low Power Near Field Communication Methods for RFID Applications of SIM Cards

    Science.gov (United States)

    Chen, Yicheng; Zheng, Zhaoxia; Gong, Mingyang; Yu, Fengqi

    2017-01-01

    Power consumption and communication distance have become crucial challenges for SIM card RFID (radio frequency identification) applications. The combination of long distance 2.45 GHz radio frequency (RF) technology and low power 2 kHz near distance communication is a workable scheme. In this paper, an ultra-low frequency 2 kHz near field communication (NFC) method suitable for SIM cards is proposed and verified in silicon. The low frequency transmission model based on electromagnetic induction is discussed. Different transmission modes are introduced and compared, which show that the baseband transmit mode has a better performance. The low-pass filter circuit and programmable gain amplifiers are applied for noise reduction and signal amplitude amplification. Digital-to-analog converters and comparators are used to judge the card approach and departure. A novel differential Manchester decoder is proposed to deal with the internal clock drift in range-controlled communication applications. The chip has been fully implemented in 0.18 µm complementary metal-oxide-semiconductor (CMOS) technology, with a 330 µA work current and a 45 µA idle current. The low frequency chip can be integrated into a radio frequency SIM card for near field RFID applications. PMID:28420104

  16. Modeling and performance assessment in QinetiQ of EO and IR airborne reconnaissance systems

    Science.gov (United States)

    Williams, John W.; Potter, Gary E.

    2002-11-01

    QinetiQ are the technical authority responsible for specifying the performance requirements for the procurement of airborne reconnaissance systems, on behalf of the UK MoD. They are also responsible for acceptance of delivered systems, overseeing and verifying the installed system performance as predicted and then assessed by the contractor. Measures of functional capability are central to these activities. The conduct of these activities utilises the broad technical insight and wide range of analysis tools and models available within QinetiQ. This paper focuses on the tools, methods and models that are applicable to systems based on EO and IR sensors. The tools, methods and models are described, and representative output for systems that QinetiQ has been responsible for is presented. The principle capability applicable to EO and IR airborne reconnaissance systems is the STAR (Simulation Tools for Airborne Reconnaissance) suite of models. STAR generates predictions of performance measures such as GRD (Ground Resolved Distance) and GIQE (General Image Quality) NIIRS (National Imagery Interpretation Rating Scales). It also generates images representing sensor output, using the scene generation software CAMEO-SIM and the imaging sensor model EMERALD. The simulated image 'quality' is fully correlated with the predicted non-imaging performance measures. STAR also generates image and table data that is compliant with STANAG 7023, which may be used to test ground station functionality.

  17. SIM and PALM: high-resolution microscopy methods and their consequences for cell biology

    Science.gov (United States)

    Krampert, Gerhard; Kleppe, Ingo; Kalkbrenner, Thomas; Weisshart, Klaus; Wolleschensky, Ralf; Kempe, Michael

    2010-04-01

    The diffraction limit in traditional fluorescence microscopy (approximately 200 and 600 nanometers in lateral and axial directions, respectively) has restricted the applications in bio-medical research. However, over the last 10 years various techniques have emerged to overcome this limit. Each of these techniques has its own characteristics that influence its application in biology. This paper will show how two of the techniques, Structured Illumination Microscopy (SIM) and PhotoActivated Localization Microscopy (PALM), complement each other in imaging of biological samples beyond the resolution of classical widefield fluorescence microscopy. As a reference the properties of two well known standard imaging techniques in this field, confocal Laser Scanning Microscopy (LSM) and Total Internal Reflection (TIRF) microscopy, are compared to the properties of the two high resolution techniques. Combined SIM/PALM imaging allows the extremely accurate localization of individual molecules within the context of various fluorescent structures already resolved in 3D with a resolution of up to 100nm using SIM. Such a combined system provides the biologist with an unprecedented view of the sub-cellular organization of life.

  18. Cotangent Models for Integrable Systems

    Science.gov (United States)

    Kiesenhofer, Anna; Miranda, Eva

    2017-03-01

    We associate cotangent models to a neighbourhood of a Liouville torus in symplectic and Poisson manifolds focusing on b-Poisson/ b-symplectic manifolds. The semilocal equivalence with such models uses the corresponding action-angle theorems in these settings: the theorem of Liouville-Mineur-Arnold for symplectic manifolds and an action-angle theorem for regular Liouville tori in Poisson manifolds (Laurent- Gengoux et al., IntMath Res Notices IMRN 8: 1839-1869, 2011). Our models comprise regular Liouville tori of Poisson manifolds but also consider the Liouville tori on the singular locus of a b-Poisson manifold. For this latter class of Poisson structures we define a twisted cotangent model. The equivalence with this twisted cotangent model is given by an action-angle theorem recently proved by the authors and Scott (Math. Pures Appl. (9) 105(1):66-85, 2016). This viewpoint of cotangent models provides a new machinery to construct examples of integrable systems, which are especially valuable in the b-symplectic case where not many sources of examples are known. At the end of the paper we introduce non-degenerate singularities as lifted cotangent models on b-symplectic manifolds and discuss some generalizations of these models to general Poisson manifolds.

  19. Virus and Bacterial Cell Chemical Analysis by NanoSIMS

    Energy Technology Data Exchange (ETDEWEB)

    Weber, P; Holt, J

    2008-07-28

    In past work for the Department of Homeland Security, the LLNL NanoSIMS team has succeeded in extracting quantitative elemental composition at sub-micron resolution from bacterial spores using nanometer-scale secondary ion mass spectrometry (NanoSIMS). The purpose of this task is to test our NanoSIMS capabilities on viruses and bacterial cells. This initial work has proven successful. We imaged Tobacco Mosaic Virus (TMV) and Bacillus anthracis Sterne cells using scanning electron microscopy (SEM) and then analyzed those samples by NanoSIMS. We were able resolve individual viral particles ({approx}18 nm by 300 nm) in the SEM and extract correlated elemental composition in the NanoSIMS. The phosphorous/carbon ratio observed in TMV is comparable to that seen in bacterial spores (0.033), as was the chlorine/carbon ratio (0.11). TMV elemental composition is consistent from spot to spot, and TMV is readily distinguished from debris by NanoSIMS analysis. Bacterial cells were readily identified in the SEM and relocated in the NanoSIMS for elemental analysis. The Ba Sterne cells were observed to have a measurably lower phosphorous/carbon ratio (0.005), as compared to the spores produced in the same run (0.02). The chlorine/carbon ratio was approximately 2.5X larger in the cells (0.2) versus the spores (0.08), while the fluorine/carbon ratio was approximately 10X lower in the cells (0.008) than the spores (0.08). Silicon/carbon ratios for both cells and spores encompassed a comparable range. The initial data in this study suggest that high resolution analysis is useful because it allows the target agent to be analyzed separate from particulates and other debris. High resolution analysis would also be useful for trace sample analysis. The next step in this work is to determine the potential utility of elemental signatures in these kinds of samples. We recommend bulk analyses of media and agent samples to determine the range of media compositions in use, and to determine how

  20. INTEGRATED HYDROGEN STORAGE SYSTEM MODEL

    Energy Technology Data Exchange (ETDEWEB)

    Hardy, B

    2007-11-16

    Hydrogen storage is recognized as a key technical hurdle that must be overcome for the realization of hydrogen powered vehicles. Metal hydrides and their doped variants have shown great promise as a storage material and significant advances have been made with this technology. In any practical storage system the rate of H2 uptake will be governed by all processes that affect the rate of mass transport through the bed and into the particles. These coupled processes include heat and mass transfer as well as chemical kinetics and equilibrium. However, with few exceptions, studies of metal hydrides have focused primarily on fundamental properties associated with hydrogen storage capacity and kinetics. A full understanding of the complex interplay of physical processes that occur during the charging and discharging of a practical storage system requires models that integrate the salient phenomena. For example, in the case of sodium alanate, the size of NaAlH4 crystals is on the order of 300nm and the size of polycrystalline particles may be approximately 10 times larger ({approx}3,000nm). For the bed volume to be as small as possible, it is necessary to densely pack the hydride particles. Even so, in packed beds composed of NaAlH{sub 4} particles alone, it has been observed that the void fraction is still approximately 50-60%. Because of the large void fraction and particle to particle thermal contact resistance, the thermal conductivity of the hydride is very low, on the order of 0.2 W/m-{sup o}C, Gross, Majzoub, Thomas and Sandrock [2002]. The chemical reaction for hydrogen loading is exothermic. Based on the data in Gross [2003], on the order of 10{sup 8}J of heat of is released for the uptake of 5 kg of H{sub 2}2 and complete conversion of NaH to NaAlH{sub 4}. Since the hydride reaction transitions from hydrogen loading to discharge at elevated temperatures, it is essential to control the temperature of the bed. However, the low thermal conductivity of the hydride

  1. Application of macro material flow modeling to the decision making process for integrated waste management systems

    Energy Technology Data Exchange (ETDEWEB)

    Vigil, S.A. [California Polytechnic State Univ., San Luis Obispo, CA (United States); Holter, G.M. [Battelle Pacific Northwest Laboratory, Richland, WA (United States)

    1995-04-01

    Computer models have been used for almost a decade to model and analyze various aspects of solid waste management Commercially available models exist for estimating the capital and operating costs of landfills, waste-to-energy facilities and compost systems and for optimizing system performance along a single dimension (e.g. cost or transportation distance). An alternative to the use of currently available models is the more flexible macro material flow modeling approach in which a macro scale or regional level approach is taken. Waste materials are tracked through the complete integrated waste management cycle from generation through recycling and reuse, and finally to ultimate disposal. Such an approach has been applied by the authors to two different applications. The STELLA simulation language (for Macintosh computers) was used to model the solid waste management system of Puerto Rico. The model incorporated population projections for all 78 municipalities in Puerto Rico from 1990 to 2010, solid waste generation factors, remaining life for the existing landfills, and projected startup time for new facilities. The Pacific Northwest Laboratory has used the SimScript simulation language (for Windows computers) to model the management of solid and hazardous wastes produced during cleanup and remediation activities at the Hanford Nuclear Site.

  2. Probabilistic models for feedback systems.

    Energy Technology Data Exchange (ETDEWEB)

    Grace, Matthew D.; Boggs, Paul T.

    2011-02-01

    In previous work, we developed a Bayesian-based methodology to analyze the reliability of hierarchical systems. The output of the procedure is a statistical distribution of the reliability, thus allowing many questions to be answered. The principal advantage of the approach is that along with an estimate of the reliability, we also can provide statements of confidence in the results. The model is quite general in that it allows general representations of all of the distributions involved, it incorporates prior knowledge into the models, it allows errors in the 'engineered' nodes of a system to be determined by the data, and leads to the ability to determine optimal testing strategies. In this report, we provide the preliminary steps necessary to extend this approach to systems with feedback. Feedback is an essential component of 'complexity' and provides interesting challenges in modeling the time-dependent action of a feedback loop. We provide a mechanism for doing this and analyze a simple case. We then consider some extensions to more interesting examples with local control affecting the entire system. Finally, a discussion of the status of the research is also included.

  3. Modeling Advance Life Support Systems

    Science.gov (United States)

    Pitts, Marvin; Sager, John; Loader, Coleen; Drysdale, Alan

    1996-01-01

    Activities this summer consisted of two projects that involved computer simulation of bioregenerative life support systems for space habitats. Students in the Space Life Science Training Program (SLSTP) used the simulation, space station, to learn about relationships between humans, fish, plants, and microorganisms in a closed environment. One student complete a six week project to modify the simulation by converting the microbes from anaerobic to aerobic, and then balancing the simulation's life support system. A detailed computer simulation of a closed lunar station using bioregenerative life support was attempted, but there was not enough known about system restraints and constants in plant growth, bioreactor design for space habitats and food preparation to develop an integrated model with any confidence. Instead of a completed detailed model with broad assumptions concerning the unknown system parameters, a framework for an integrated model was outlined and work begun on plant and bioreactor simulations. The NASA sponsors and the summer Fell were satisfied with the progress made during the 10 weeks, and we have planned future cooperative work.

  4. Minisuperspace models of discrete systems

    CERN Document Server

    Baytaş, Bekir

    2016-01-01

    A discrete quantum spin system is presented in which several modern methods of canonical quantum gravity can be tested with promising results. In particular, features of interacting dynamics are analyzed with an emphasis on homogeneous configurations and the dynamical building-up and stability of long-range correlations. Different types of homogeneous minisuperspace models are introduced for the system, including one based on condensate states, and shown to capture different aspects of the discrete system. They are evaluated with effective methods and by means of continuum limits, showing good agreement with operator calculations whenever the latter are available. As a possibly quite general result, it is concluded that an analysis of the building-up of long-range correlations in discrete systems requires non-perturbative solutions of the dynamical equations. Some questions related to stability can be analyzed perturbatively, but suggest that matter couplings may be relevant for this question in the context o...

  5. Water quality spatial and temporal evaluation and auto-purification simulation from the São Simão stream watershed, SP

    Directory of Open Access Journals (Sweden)

    Letícia Hirata Godoy

    2012-12-01

    Full Text Available This study evaluated the water of São Simão stream watershed. For this, six sampling points were established and twelve samples of water were collected during the months of March, May, June, July, August, September, October, November, and December of 2005 and January, February, and March of 2006. The following variables were analyzed: discharge, temperature, turbidity, pH, electrical conductivity (EC, dissolved oxygen (DO, alkalinity, chloride and TSS (total suspended solids. The Streter & Phelps model which correlates the variation of the deficit oxygen with the distance was applied to evaluate the São Simão stream auto-purification. The characteristics of the São Simão stream near its spring until it reaches São Simão city allowed concluding that there is low interference in its quality. However, the absence of treatment of domestic wastewater at São Simão city reduced the water quality and increased the degradation process of São Simão stream after passing through the city. The Streeter & Phelps model allowed identifying the auto-purification zones in this stream and indicated the need for primary wastewater treatment, with an efficiency of 30%.

  6. Changes in the molecular ion yield and fragmentation of peptides under various primary ions in ToF-SIMS and matrix-enhanced ToF-SIMS.

    Science.gov (United States)

    Körsgen, Martin; Tyler, Bonnie J; Pelster, Andreas; Lipinsky, Dieter; Dreisewerd, Klaus; Arlinghaus, Heinrich F

    2016-06-01

    Time of flight secondary ion mass spectrometry (ToF-SIMS) is a powerful technique for the nanoanalysis of biological samples, but improvements in sensitivity are needed in order to detect large biomolecules, such as peptides, on the individual cell level at physiological concentrations. Two promising options to improve the sensitivity of SIMS to large peptides are the use of cluster primary ions to increase desorption of intact molecules or the use of matrix-assisted laser desorption/ionization (MALDI) matrices to increase the ionization probability. In this paper, the authors have combined these two approaches in order to improve understanding of the interaction between ionization and fragmentation processes. The peptides bradykinin and melittin were prepared as neat monolayers on silicon, in a Dextran-40 matrix and in two common MALDI matrices, 2,5-dihydroxybenzoic acid (DHB) and α-cyano-4-hydroxy cinnamic acid (HCCA). ToF-SIMS spectra of these samples were collected using a range of small Bi cluster primary ions and large Ar cluster primary ions. The trends observed in the molecular ion yield and the [M+H](+)/C4H8N(+) ratio with primary ion cluster size were sample system dependent. The molecular ion yield of the bradykinin was maximized by using 30 keV Bi3 (+) primary ions in a DHB matrix but in the HCCA matrix, the maximum molecular ion yield was obtained by using 30 keV Bi7 (+) primary ions. In contrast, the molecular ion yield for melittin in both matrices was greatest using 20 keV Ar2000 (+) primary ions. Improvements in the molecular ion yield were only loosely correlated with a decrease in small fragment ions. The data indicate a complex interplay between desorption processes and ion formation processes which mean that the optimal analytical conditions depend on both the target analyte and the matrix.

  7. The Control System Modeling Language

    CERN Document Server

    Zagar, K; Sekoranja, M; Tkacik, G; Vodovnik, A; Zagar, Klemen; Plesko, Mark; Sekoranja, Matej; Tkacik, Gasper; Vodovnik, Anze

    2001-01-01

    The well-known Unified Modeling Language (UML) describes software entities, such as interfaces, classes, operations and attributes, as well as relationships among them, e.g. inheritance, containment and dependency. The power of UML lies in Computer Aided Software Engineering (CASE) tools such as Rational Rose, which are also capable of generating software structures from visual object definitions and relations. UML also allows add-ons that define specific structures and patterns in order to steer and automate the design process. We have developed an add-on called Control System Modeling Language (CSML). It introduces entities and relationships that we know from control systems, such as "property" representing a single controllable point/channel, or an "event" specifying that a device is capable of notifying its clients through events. Entities can also possess CSML-specific characteristics, such as physical units and valid ranges for input parameters. CSML is independent of any specific language or technology...

  8. Contextual Modelling of Collaboration System

    Directory of Open Access Journals (Sweden)

    Wafaa DACHRY

    2012-03-01

    Full Text Available Faced with new environmental constraints, firms decide to collaborate in collective entities and adopt new patterns of behavior. So, this firms’ collaboration becomes an unavoidable approach. Indeed, our aim interest in our study is to propose a collaborative information system for supply chain. Our proposed platform ensures cooperation and information sharing between partners in real time. In fact, several questions have to be asked: What is the information nature may be shared between partners? What processes are implemented between actors? What functional services are supported by the platform? In order to answer these questions, we present, in this article, our methodological approach of modelling, called CMCS (Contextual Modelling of Collaborative System

  9. Stochastic Models of Polymer Systems

    Science.gov (United States)

    2016-01-01

    field limit of a dynamical model for polymer systems, Science China Mathematics , (11 2012): 0. doi: TOTAL: 1 Number of Non Peer-Reviewed Conference...4.0 (4.0 max scale): Number of graduating undergraduates funded by a DoD funded Center of Excellence grant for Education , Research and Engineering...undergraduates funded by your agreement who graduated during this period and will receive scholarships or fellowships for further studies in science

  10. Model reduction of parametrized systems

    CERN Document Server

    Ohlberger, Mario; Patera, Anthony; Rozza, Gianluigi; Urban, Karsten

    2017-01-01

    The special volume offers a global guide to new concepts and approaches concerning the following topics: reduced basis methods, proper orthogonal decomposition, proper generalized decomposition, approximation theory related to model reduction, learning theory and compressed sensing, stochastic and high-dimensional problems, system-theoretic methods, nonlinear model reduction, reduction of coupled problems/multiphysics, optimization and optimal control, state estimation and control, reduced order models and domain decomposition methods, Krylov-subspace and interpolatory methods, and applications to real industrial and complex problems. The book represents the state of the art in the development of reduced order methods. It contains contributions from internationally respected experts, guaranteeing a wide range of expertise and topics. Further, it reflects an important effor t, carried out over the last 12 years, to build a growing research community in this field. Though not a textbook, some of the chapters ca...

  11. Computational models of complex systems

    CERN Document Server

    Dabbaghian, Vahid

    2014-01-01

    Computational and mathematical models provide us with the opportunities to investigate the complexities of real world problems. They allow us to apply our best analytical methods to define problems in a clearly mathematical manner and exhaustively test our solutions before committing expensive resources. This is made possible by assuming parameter(s) in a bounded environment, allowing for controllable experimentation, not always possible in live scenarios. For example, simulation of computational models allows the testing of theories in a manner that is both fundamentally deductive and experimental in nature. The main ingredients for such research ideas come from multiple disciplines and the importance of interdisciplinary research is well recognized by the scientific community. This book provides a window to the novel endeavours of the research communities to present their works by highlighting the value of computational modelling as a research tool when investigating complex systems. We hope that the reader...

  12. TOF-SIMS studies of yttria-stabilised zirconia

    DEFF Research Database (Denmark)

    Hansen, Karin Vels; Norrman, Kion; Mogensen, Mogens Bjerg

    2006-01-01

    The surface of an as-polished and an as-sintered yttria-stabilised zirconia pellet was analysed with XPS and TOF-SIMS (depth profiling and imaging) in order to study the distribution of impurities. The polished sample was slightly contaminated with Na, K, Mg and Ca. The sintered sample showed...

  13. Trace element analysis in silicon by accelerator SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Ender, R.M.; Suter, M. [Eidgenoessische Technische Hochschule, Zurich (Switzerland); Doebeli, M.; Synal, H.A. [Paul Scherrer Inst. (PSI), Villigen (Switzerland)

    1997-09-01

    The accelerator SIMS technique has been applied to Si samples implanted with different elements. It has been shown that concentrations of several trace elements can be analysed down to about 1 ppb in depth profiling mode. (author) 2 figs., 1 ref.

  14. ToF-SIMS PCA analysis of Myrtus communis L.

    Science.gov (United States)

    Piras, F. M.; Dettori, M. F.; Magnani, A.

    2009-06-01

    Nowadays there is a growing interest of researchers for the application of sophisticated analytical techniques in conjunction with statistical data analysis methods to the characterization of natural products to assure their authenticity and quality, and for the possibility of direct analysis of food to obtain maximum information. In this work, time-of-flight secondary ion mass spectrometry (ToF-SIMS) in conjunction with principal components analysis (PCA) are applied to study the chemical composition and variability of Sardinian myrtle ( Myrtus communis L.) through the analysis of both berries alcoholic extracts and berries epicarp. ToF-SIMS spectra of berries epicarp show that the epicuticular waxes consist mainly of carboxylic acids with chain length ranging from C20 to C30, or identical species formed from fragmentation of long-chain esters. PCA of ToF-SIMS data from myrtle berries epicarp distinguishes two groups characterized by a different surface concentration of triacontanoic acid. Variability in antocyanins, flavonols, α-tocopherol, and myrtucommulone contents is showed by ToF-SIMS PCA analysis of myrtle berries alcoholic extracts.

  15. Performance of BICM-based QAM-SIM OWC over gamma-gamma turbulence channels

    KAUST Repository

    Malik, Muhammad Talha

    2015-05-01

    We derive a series expression for the pair-wise error probability (PEP) of bit interleaved coded modulation (BICM)-based subcarrier intensity modulation (SIM) optical wireless communication (OWC) system employing M^{2}-ary quadrature amplitude modulation ( M^{2} -QAM) over the Gamma-Gamma turbulence channels. Using this expression, we develop an upper bound (UB) to predict the bit-error rate performance of such system. Simulation results are presented to verify the analytical results. We also develop an asymptotic UB which reveals that the diversity order depends on the smaller channel parameter and the free distance of the convolutional code. © 1997-2012 IEEE.

  16. Identification and Modelling of Linear Dynamic Systems

    Directory of Open Access Journals (Sweden)

    Stanislav Kocur

    2006-01-01

    Full Text Available System identification and modelling are very important parts of system control theory. System control is only as good as good is created model of system. So this article deals with identification and modelling problems. There are simple classification and evolution of identification methods, and then the modelling problem is described. Rest of paper is devoted to two most known and used models of linear dynamic systems.

  17. AlphaSim: Software for Breeding Program Simulation.

    Science.gov (United States)

    Faux, Anne-Michelle; Gorjanc, Gregor; Gaynor, R Chris; Battagin, Mara; Edwards, Stefan M; Wilson, David L; Hearne, Sarah J; Gonen, Serap; Hickey, John M

    2016-11-01

    This paper describes AlphaSim, a software package for simulating plant and animal breeding programs. AlphaSim enables the simulation of multiple aspects of breeding programs with a high degree of flexibility. AlphaSim simulates breeding programs in a series of steps: (i) simulate haplotype sequences and pedigree; (ii) drop haplotypes into the base generation of the pedigree and select single-nucleotide polymorphism (SNP) and quantitative trait nucleotide (QTN); (iii) assign QTN effects, calculate genetic values, and simulate phenotypes; (iv) drop haplotypes into the burn-in generations; and (v) perform selection and simulate new generations. The program is flexible in terms of historical population structure and diversity, recent pedigree structure, trait architecture, and selection strategy. It integrates biotechnologies such as doubled-haploids (DHs) and gene editing and allows the user to simulate multiple traits and multiple environments, specify recombination hot spots and cold spots, specify gene jungles and deserts, perform genomic predictions, and apply optimal contribution selection. AlphaSim also includes restart functionalities, which increase its flexibility by allowing the simulation process to be paused so that the parameters can be changed or to import an externally created pedigree, trial design, or results of an analysis of previously simulated data. By combining the options, a user can simulate simple or complex breeding programs with several generations, variable population structures and variable breeding decisions over time. In conclusion, AlphaSim is a flexible and computationally efficient software package to simulate biotechnology enhanced breeding programs with the aim of performing rapid, low-cost, and objective in silico comparison of breeding technologies. Copyright © 2016 Crop Science Society of America.

  18. Developing a Serious Game for decision making for the water-land-food-energy-climate Nexus in Sardinia-Italy: The SIM4NEXUS approach

    Science.gov (United States)

    Vamvakeridou-Lyroudia, Lydia; Alexandri, Eva; Blanco, Maria; Chew, Chengzi; Conradt, Tobias; Daskalou, Olympia; Evans, Barry; Guitart, Francesc; Mereu, Simone; Sartori, Martina; Susnik, Janez; Savic, Dragan

    2017-04-01

    A four-year EU H2020 project "Sustainable Integrated Management FOR the NEXUS of water-land-food-energy-climate for a resource-efficient Europe (SIM4NEXUS)" started in June 2016, with an overall grant of € 7.9M (www.sim4nexus.eu). The project involves 25 partners from 15 European countries. SIM4NEXUS has four objectives: (i) to adopt existing knowledge and develop new expertise on the water-energy-food-climate-land use Nexus; (ii) to reduce uncertainties of how policies, governance and institutions affect complex environmental systems; (iii) to showcase the implementation via a network of three regional, five national, two transboundary case studies in Europe, as well as continental and global studies; (iv) to valorise the project outputs by suitable business models. SIM4NEXUS develops an innovative concept and methodologies to facilitate the design of policies and bridge knowledge and technology gaps in the field of the Nexus under global change. The project will develop a methodology of integration using a complexity science approach and a Serious Game (a decision-based platform that allows policy makers to play out scenarios to see what would bring the best outcome) as an integrating tool for testing and evaluating policy decisions. The Serious Game is based on Aqua Republica (http://www.dhigroup.com/upload/publications/scribd/172629015-Exploring-the-World-of-Aqua-Republica-DHI-Case-Story.pdf ) and will cover a vast array of scenarios for all the case studies, over short, medium and long terms. In this presentation we focus on all the stages of the development of the Serious Game for one of our Case Studies (Sardinia, Italy) which is being used as a pilot example prior to wider rollout. Specifically we detail the components and steps involved in Game development including: (i) linking thematic models (CAPRI- http://www.capri-model.org/dokuwiki/doku.php and E3ME- http://www.e3me.com/) and downscaling to regional level; (ii) climate change scenarios (using and

  19. Chemical abrasion-SIMS (CA-SIMS) U-Pb dating of zircon from the late Eocene Caetano caldera, Nevada

    Science.gov (United States)

    Watts, Kathryn E.; Coble, Matthew A.; Vazquez, Jorge A.; Henry, Christopher D.; Colgan, Joseph P.; John, David A.

    2016-01-01

    Zircon geochronology is a critical tool for establishing geologic ages and time scales of processes in the Earth's crust. However, for zircons compromised by open system behavior, achieving robust dates can be difficult. Chemical abrasion (CA) is a routine step prior to thermal ionization mass spectrometry (TIMS) dating of zircon to remove radiation-damaged parts of grains that may have experienced open system behavior and loss of radiogenic Pb. While this technique has been shown to improve the accuracy and precision of TIMS dating, its application to high-spatial resolution dating methods, such as secondary ion mass spectrometry (SIMS), is relatively uncommon. In our efforts to U-Pb date zircons from the late Eocene Caetano caldera by SIMS (SHRIMP-RG: sensitive high resolution ion microprobe, reverse geometry), some grains yielded anomalously young U-Pb ages that implicated Pb-loss and motivated us to investigate with a comparative CA and non-CA dating study. We present CA and non-CA 206Pb/238U ages and trace elements determined by SHRIMP-RG for zircons from three Caetano samples (Caetano Tuff, Redrock Canyon porphyry, and a silicic ring-fracture intrusion) and for R33 and TEMORA-2 reference zircons. We find that non-CA Caetano zircons have weighted mean or bimodal U-Pb ages that are 2–4% younger than CA zircons for the same samples. CA Caetano zircons have mean U-Pb ages that are 0.4–0.6 Myr older than the 40Ar/39Ar sanidine eruption age (34.00 ± 0.03 Ma; error-weighted mean, 2σ), whereas non-CA zircons have ages that are 0.7–1.3 Myr younger. U-Pb ages do not correlate with U (~ 100–800 ppm), Th (~ 50–300 ppm) or any other measured zircon trace elements (Y, Hf, REE), and CA and non-CA Caetano zircons define identical trace element ranges. No statistically significant difference in U-Pb age is observed for CA versus non-CA R33 or TEMORA-2 zircons. Optical profiler measurements of ion microprobe pits demonstrate consistent depths of ~ 1.6

  20. ISSM: Ice Sheet System Model

    Science.gov (United States)

    Larour, Eric; Schiermeier, John E.; Seroussi, Helene; Morlinghem, Mathieu

    2013-01-01

    In order to have the capability to use satellite data from its own missions to inform future sea-level rise projections, JPL needed a full-fledged ice-sheet/iceshelf flow model, capable of modeling the mass balance of Antarctica and Greenland into the near future. ISSM was developed with such a goal in mind, as a massively parallelized, multi-purpose finite-element framework dedicated to ice-sheet modeling. ISSM features unstructured meshes (Tria in 2D, and Penta in 3D) along with corresponding finite elements for both types of meshes. Each finite element can carry out diagnostic, prognostic, transient, thermal 3D, surface, and bed slope simulations. Anisotropic meshing enables adaptation of meshes to a certain metric, and the 2D Shelfy-Stream, 3D Blatter/Pattyn, and 3D Full-Stokes formulations capture the bulk of the ice-flow physics. These elements can be coupled together, based on the Arlequin method, so that on a large scale model such as Antarctica, each type of finite element is used in the most efficient manner. For each finite element referenced above, ISSM implements an adjoint. This adjoint can be used to carry out model inversions of unknown model parameters, typically ice rheology and basal drag at the ice/bedrock interface, using a metric such as the observed InSAR surface velocity. This data assimilation capability is crucial to allow spinning up of ice flow models using available satellite data. ISSM relies on the PETSc library for its vectors, matrices, and solvers. This allows ISSM to run efficiently on any parallel platform, whether shared or distrib- ISSM: Ice Sheet System Model NASA's Jet Propulsion Laboratory, Pasadena, California uted. It can run on the largest clusters, and is fully scalable. This allows ISSM to tackle models the size of continents. ISSM is embedded into MATLAB and Python, both open scientific platforms. This improves its outreach within the science community. It is entirely written in C/C++, which gives it flexibility in its

  1. Integrated Modeling for Flood Hazard Mapping Using Watershed Modeling System

    National Research Council Canada - National Science Library

    Seyedeh S. Sadrolashrafi; Thamer A. Mohamed; Ahmad R.B. Mahmud; Majid K. Kholghi; Amir Samadi

    2008-01-01

    ...) with the Watershed Modeling System (WMS) for flood modeling is developed. It also interconnects the terrain models and the GIS software, with commercial standard hydrological and hydraulic models, including HEC-1, HEC-RAS, etc...

  2. SORCE SIM Level 3 Solar Spectral Irradiance Daily Means V019

    Data.gov (United States)

    National Aeronautics and Space Administration — The SORCE SIM Solar Spectral Irradiance (SSI) data product SOR3SIMD is constructed using measurements from the SIM instruments, which are combined into merged daily...

  3. SORCE SIM Level 3 Solar Spectral Irradiance Daily Means V020

    Data.gov (United States)

    National Aeronautics and Space Administration — The SORCE SIM Solar Spectral Irradiance (SSI) data product SOR3SIMD is constructed using measurements from the SIM instruments, which are combined into merged daily...

  4. Development and validation of TOF-SIMS and CLSM imaging method for cytotoxicity study of ZnO nanoparticles in HaCaT cells

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Pei-Ling; Chen, Bo-Chia; Gollavelli, Ganesh [Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan (China); Shen, Sin-Yu [Graduate Institute of Medical Science, Taipei Medical University, Taipei 11031, Taiwan (China); Yin, Yu-Sheng; Lei, Shiu-Ling [Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan (China); Jhang, Cian-Ling; Lee, Woan-Ruoh [Department of Dermatology, Taipei Medical University, Taipei 11031, Taiwan (China); Ling, Yong-Chien, E-mail: ycling@mx.nthu.edu.tw [Department of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan (China); Graduate Institute of Medical Science, Taipei Medical University, Taipei 11031, Taiwan (China)

    2014-07-30

    Highlights: • Assorted material, chemical, and toxicological analysis methods were used to confirm the shape, size, crystalline structure, and aggregation properties of ZnO NPS as well as their dissolution behavior and effect on HaCaT cell viability. • The developed TOF-SIMS and CLSM imaging method for rapid and sensitive study of ZnO NPs in HaCaT cells was validated by comparative and correlative analyses to aforementioned experimental results. • The imaging results demonstrate spatially-resolved cytotoxicity relationship between intracellular ZnO NPs concentration, {sup 40}Ca/{sup 39}K ratio, phosphocholine fragments, and glutathione fragments. CLSM images reveal the localization of ZnO NPs in cytoplasm and nuclei. • The trend of change in TOF-SIMS spectra and images of ZnO NPs treated HaCaT cells demonstrate the possible mode of actions by ZnO NP involves cell membrane disruption, cytotoxic response, and ROS mediated apoptosis. - Abstract: Zinc oxide nanoparticles (ZnO NPs) exhibit novel physiochemical properties and have found increasing use in sunscreen products and cosmetics. The potential toxicity is of increasing concern due to their close association with human skin. A time-of-flight secondary ion mass spectrometry (TOF-SIMS) and confocal laser scanning microscopy (CLSM) imaging method was developed and validated for rapid and sensitive cytotoxicity study of ZnO NPs using human skin equivalent HaCaT cells as a model system. Assorted material, chemical, and toxicological analysis methods were used to confirm their shape, size, crystalline structure, and aggregation properties as well as dissolution behavior and effect on HaCaT cell viability in the presence of various concentrations of ZnO NPs in aqueous media. Comparative and correlative analyses of aforementioned results with TOF-SIMS and CLSM imaging results exhibit reasonable and acceptable outcome. A marked drop in survival rate was observed with 50 μg/ml ZnO NPs. The CLSM images reveal the

  5. Multilayer analysis using SIMS: interpretation of profiles at interfaces. Analyse de couches ou multicouches par SIMS : interpretation du profil aux interfaces

    Energy Technology Data Exchange (ETDEWEB)

    Aucouturier, M. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Grattepain, C. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Tromson-Carli, A. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Barbe, M. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Cohen-Solal, G. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Marfaing, Y. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Chevrier, F. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Gall, H. le (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France)); Imhoff, D. (CNRS, Labs. de Meudon-Bellevue, 92 Meudon (France))

    1993-11-01

    Secondary ion mass spectrometry (SIMS) is a well adapted analytical method for the chemical characterization of concentration profiles in layered or multilayered materials, particularly concerning the more or less abrupt interfaces bounding those layers. It is known that the fiability and accuracy of the interface characterization may be affected by methodological factors, which alter the depth resolution such as: macroscopical or microscopical initial roughness of the substrate and/or of the layers, ion-induced roughening, effects of differential sputtering of the various elements, transitory stage of the primary ion beam implantation, ion beam induced accelerated diffusion, balistic mixing or segregation; etc.. This communication describes several examples of SIMS analysis performed on metal multilayers (Co/Cu) and on epitaxial semiconductor layers (CdTe/GaAs), focussing the interest on the particular analytical problems raised by the initial roughness and the ion induced roughening effect. The interpretation of the measured profiles, the influence of analytical parameters (such as the nature of the primary ion beam, sputtering conditions, detected ion species), and the limitations of profilometry roughness measurements, are discussed. Solutions are proposed in order to improve the depth resolution of interface characterization, including a tentative modelization of roughness effects. (orig.).

  6. Network models in anatomical systems.

    Science.gov (United States)

    Esteve-Altava, Borja; Marugán-Lobón, Jesús; Botella, Héctor; Rasskin-Gutman, Diego

    2011-01-01

    Network theory has been extensively used to model the underlying structure of biological processes. From genetics to ecology, network thinking is changing our understanding of complex systems, specifically how their internal structure determines their overall behavior. Concepts such as hubs, scale-free or small-world networks, common in the complexity literature, are now used more and more in sociology, neurosciences, as well as other anthropological fields. Even though the use of network models is nowadays so widely applied, few attempts have been carried out to enrich our understanding in the classical morphological sciences such as in comparative anatomy or physical anthropology. The purpose of this article is to introduce the usage of network tools in morphology; specifically by building anatomical networks, dealing with the most common analyses and problems, and interpreting their outcome.

  7. Thermodynamic modeling of complex systems

    DEFF Research Database (Denmark)

    Liang, Xiaodong

    Offshore reservoirs represent one of the major growth areas of the oil and gas industry, and environmental safety is one of the biggest challenges for the offshore exploration and production. The oil accidents in the Gulf of Mexico in 1979 and 2010 were two of the biggest disasters in history...... after an oil spill. Engineering thermodynamics could be applied in the state-of-the-art sonar products through advanced artificial technology, if the speed of sound, solubility and density of oil-seawater systems could be satisfactorily modelled. The addition of methanol or glycols into unprocessed well...

  8. Models for Gaze Tracking Systems

    Directory of Open Access Journals (Sweden)

    Villanueva Arantxa

    2007-01-01

    Full Text Available One of the most confusing aspects that one meets when introducing oneself into gaze tracking technology is the wide variety, in terms of hardware equipment, of available systems that provide solutions to the same matter, that is, determining the point the subject is looking at. The calibration process permits generally adjusting nonintrusive trackers based on quite different hardware and image features to the subject. The negative aspect of this simple procedure is that it permits the system to work properly but at the expense of a lack of control over the intrinsic behavior of the tracker. The objective of the presented article is to overcome this obstacle to explore more deeply the elements of a video-oculographic system, that is, eye, camera, lighting, and so forth, from a purely mathematical and geometrical point of view. The main contribution is to find out the minimum number of hardware elements and image features that are needed to determine the point the subject is looking at. A model has been constructed based on pupil contour and multiple lighting, and successfully tested with real subjects. On the other hand, theoretical aspects of video-oculographic systems have been thoroughly reviewed in order to build a theoretical basis for further studies.

  9. Models for Gaze Tracking Systems

    Directory of Open Access Journals (Sweden)

    Arantxa Villanueva

    2007-10-01

    Full Text Available One of the most confusing aspects that one meets when introducing oneself into gaze tracking technology is the wide variety, in terms of hardware equipment, of available systems that provide solutions to the same matter, that is, determining the point the subject is looking at. The calibration process permits generally adjusting nonintrusive trackers based on quite different hardware and image features to the subject. The negative aspect of this simple procedure is that it permits the system to work properly but at the expense of a lack of control over the intrinsic behavior of the tracker. The objective of the presented article is to overcome this obstacle to explore more deeply the elements of a video-oculographic system, that is, eye, camera, lighting, and so forth, from a purely mathematical and geometrical point of view. The main contribution is to find out the minimum number of hardware elements and image features that are needed to determine the point the subject is looking at. A model has been constructed based on pupil contour and multiple lighting, and successfully tested with real subjects. On the other hand, theoretical aspects of video-oculographic systems have been thoroughly reviewed in order to build a theoretical basis for further studies.

  10. The inner $\\sim$ 40 pc Radial Distribution of the Star formation Rate for a nearby Seyfert 2 galaxy M51

    CERN Document Server

    Fang, Li-Ling; He, Zhi-Cheng; Bian, Wei-Hao

    2015-01-01

    We investigate spatially resolved specific star formation rate (SSFR) in the inner $\\sim$ 40 pc for a nearby Seyfert 2 galaxy, M51 (NGC 5194) by analyzing spectra obtained with the \\emph{Hubble Space Telescope (HST)} Space Telescope Imaging Spectrograph (STIS). We present 24 radial spectra measured along the STIS long slit in M51, extending $\\sim 1\\arcsec$ from the nucleus (i.e., -41.5 pc to 39.4 pc). By the simple stellar population synthesis, the stellar contributions in these radial optical spectra are modeled. Excluding some regions with zero young flux fraction near the center (from -6 pc to 2 pc), we find that the mean flux fraction of young stellar populations (younger than 24.5 Myr) is about 9 \\%, the mean mass fraction is about 0.09\\%. The young stellar populations are not required in the center inner $\\sim$ 8 pc in M51, suggesting a possible SSFR suppression in the circumnuclear region ($\\sim$ 10 pc) from the feedback of active galactic nuclei (AGNs). The radial distribution of SSFR in M51 is not sy...

  11. High Spatial Resolution nanoSIMS Analysis to Calibrate Environmental Proxies in Coral Grown During Short Culture Experiments

    Science.gov (United States)

    Gagnon, A. C.; Adkins, J. F.; Erez, J.; Eiler, J. M.; Guan, Y.

    2009-12-01

    were all grown at 25°C but different and near constant carbonate ion concentrations, from 180 to 400µM (pH of 7.9 to 8.5), resulting in a two-fold range in calcification rate. Despite the range of carbonate ion concentrations and calcification rates, the average Sr/Ca of nanoSIMS spot measurements corresponding to each condition are within 1.2% (2σ std. dev. of the 5 means) compared with the reported ~ 0.7% per degree C response of surface coral to temperature. These data suggest that temperature is a more significant control on Sr/Ca than [CO32-] or calcification rate in the studied coral, supporting the use of Sr/Ca as a paleoproxy. Within the framework of a closed system (Rayleigh) model for biomineralization, these data suggest similar extents of calcification over the range of culture conditions. The results constrain explanations for the sensitivity of coral calcification rates to ocean acidification, improving our understanding of how anthropogenic CO2 will impact coral reefs.

  12. Area Logistics System Based on System Dynamics Model

    Institute of Scientific and Technical Information of China (English)

    GUI Shouping; ZHU Qiang; LU Lifang

    2005-01-01

    At present, there are few effective ways to analyze area logistics systems. This paper uses system dynamics to analyze the area logistics system and establishes a system dynamics model for the area logistics system based on the characteristics of the area logistics system and system dynamics. Numerical simulations with the system dynamic model were used to analyze a logistic system. Analysis of the Guangzhou economy shows that the model can reflect the actual state of the system objectively and can be used to make policy and harmonize environment.

  13. In Situ Characterization of Hydrated Proteins in Water by SALVI and ToF-SIMS

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Jiachao; Zhou, Yufan; Hua, Xin; Zhu, Zihua; Yu, Xiao-Ying

    2016-01-01

    We demonstrate in situ chemical imaging of protein biomolecules in the aqueous solution using System for Analysis at the Liquid Vacuum Interface (SALVI) and time-of-flight secondary ion mass spectrometry (ToF-SIMS). The fibronectin protein film was immobilized on the silicon nitride (SiN) membrane forming the SALVI detection area. During ToF-SIMS analysis, three modes of analysis were conducted including high spatial resolution mass spectra, two-dimensional (2D) imaging, and depth profiling. Mass spectra were acquired in both positive and negative modes. Deionized water was also analyzed as a reference sample. Our results show that fibronectin film in water has more distinct and stronger water cluster peaks compared to water alone. Characteristic peaks of amino acid fragments are also observable in the hydrated protein ToF-SIMS spectra. These results illustrate that protein molecule adsorption on a surface can be studied dynamically using SALVI and ToF-SIMS in the liquid environment.

  14. Building and Running the Yucca Mountain Total System Performance Model in a Quality Environment

    Energy Technology Data Exchange (ETDEWEB)

    D.A. Kalinich; K.P. Lee; J.A. McNeish

    2005-01-09

    A Total System Performance Assessment (TSPA) model has been developed to support the Safety Analysis Report (SAR) for the Yucca Mountain High-Level Waste Repository. The TSPA model forecasts repository performance over a 20,000-year simulation period. It has a high degree of complexity due to the complexity of its underlying process and abstraction models. This is reflected in the size of the model (a 27,000 element GoldSim file), its use of dynamic-linked libraries (14 DLLs), the number and size of its input files (659 files totaling 4.7 GB), and the number of model input parameters (2541 input database entries). TSPA model development and subsequent simulations with the final version of the model were performed to a set of Quality Assurance (QA) procedures. Due to the complexity of the model, comments on previous TSPAs, and the number of analysts involved (22 analysts in seven cities across four time zones), additional controls for the entire life-cycle of the TSPA model, including management, physical, model change, and input controls were developed and documented. These controls did not replace the QA. procedures, rather they provided guidance for implementing the requirements of the QA procedures with the specific intent of ensuring that the model development process and the simulations performed with the final version of the model had sufficient checking, traceability, and transparency. Management controls were developed to ensure that only management-approved changes were implemented into the TSPA model and that only management-approved model runs were performed. Physical controls were developed to track the use of prototype software and preliminary input files, and to ensure that only qualified software and inputs were used in the final version of the TSPA model. In addition, a system was developed to name, file, and track development versions of the TSPA model as well as simulations performed with the final version of the model.

  15. Enterprise Modelling supported by Manufacturing Systems Theory

    OpenAIRE

    MYKLEBUST, Odd

    2002-01-01

    There exist today a large number of enterprise models or enterprise modelling approaches. In a study of standards and project developed models there are two approaches: CIMOSA “The Open Systems Architecture for CIM” and GERAM, “Generalised Enterprise Reference Architecture”, which show a system orientation that can be further followed as interesting research topics for a system theory oriented approach for enterprise models. In the selection of system theories, manufacturing system theory...

  16. Viability of $\\Delta m^2\\sim$ 1 eV$^2$ sterile neutrino mixing models in light of MiniBooNE electron neutrino and antineutrino data from the Booster and NuMI beamlines

    CERN Document Server

    Karagiorgi, G; Conrad, J; Shaevitz, M H; Sorel, M

    2009-01-01

    This paper examines sterile neutrino oscillation models in light of recently published results from the MiniBooNE Experiment. The new MiniBooNE data include the updated neutrino results, including the low energy region, and the first antineutrino results, as well as first results from the off-axis NuMI beam observed in the MiniBooNE detector. These new global fits also include data from LSND, KARMEN, NOMAD, Bugey, CHOOZ, CCFR84, and CDHS. Constraints from atmospheric oscillation data have been imposed.

  17. Modeling learning technology systems as business systems

    NARCIS (Netherlands)

    Avgeriou, Paris; Retalis, Symeon; Papaspyrou, Nikolaos

    2003-01-01

    The design of Learning Technology Systems, and the Software Systems that support them, is largely conducted on an intuitive, ad hoc basis, thus resulting in inefficient systems that defectively support the learning process. There is now justifiable, increasing effort in formalizing the engineering o

  18. Modeling learning technology systems as business systems

    NARCIS (Netherlands)

    Avgeriou, Paris; Retalis, Symeon; Papaspyrou, Nikolaos

    2003-01-01

    The design of Learning Technology Systems, and the Software Systems that support them, is largely conducted on an intuitive, ad hoc basis, thus resulting in inefficient systems that defectively support the learning process. There is now justifiable, increasing effort in formalizing the engineering

  19. Microscopic study of chiral rotation in odd-odd A $\\sim$ 100 nuclei

    CERN Document Server

    Dar, W A; Bhat, G H; Palit, R; Frauendorf, S

    2013-01-01

    A systematic study of the doublet bands observed in odd-odd mass $\\sim$ 100 is performed using the microscopic triaxial projected shell model approach. This mass region has depicted some novel features which are not observed in other mass regions, for instance, it has been observed that two chiral bands cross diabatically in $^{106}$Ag. It is demonstrated that this unique feature is due to crossing of the two 2-quasiparticle configurations having different intrinsic structures. Further, we provide a complete set of transition probabilities for all the six-isotopes studied in this work and it is shown that the predicted transitions are in good agreement with the available experimental data.

  20. Continuos y el producto simétrico suspensión

    Directory of Open Access Journals (Sweden)

    Franco Barragán

    2012-12-01

    Full Text Available En este artículo presentamos una breve introducción a la teoría de los continuos y sus hiperespacios. Nos enfocamos en algunos modelos geomé- tricos del producto simétrico suspensión de un continuo y mostramos resultados acerca de conexidad local y arcoconexidad de este espacio. Abstract. In this paper we present a short introduction to continuum theory and its hyperspaces. We focus our attention on some geometric models of the symmetric product suspensions of a continuum and we show results on local connectedness and arcwise connectedness of this space.

  1. Continuos y el producto simétrico suspensión

    OpenAIRE

    2012-01-01

    En este artículo presentamos una breve introducción a la teoría de los continuos y sus hiperespacios. Nos enfocamos en algunos modelos geomé- tricos del producto simétrico suspensión de un continuo y mostramos resultados acerca de conexidad local y arcoconexidad de este espacio. Abstract. In this paper we present a short introduction to continuum theory and its hyperspaces. We focus our attention on some geometric models of the symmetric product suspensions of a continuu...

  2. Modeling, Control, and Simulation of a Solar Hydrogen/Fuel Cell Hybrid Energy System for Grid-Connected Applications

    Directory of Open Access Journals (Sweden)

    Tourkia Lajnef

    2013-01-01

    Full Text Available Different energy sources and converters need to be integrated with each other for extended usage of alternative energy, in order to meet sustained load demands during various weather conditions. The objective of this paper is to associate photovoltaic generators, fuel cells, and electrolysers. Here, to sustain the power demand and solve the energy storage problem, electrical energy can be stored in the form of hydrogen. By using an electrolyser, hydrogen can be generated and stored for future use. The hydrogen produced by the electrolyser using PV power is used in the FC system and acts as an energy buffer. Thus, the effects of reduction and even the absence of the available power from the PV system can be easily tackled. Modeling and simulations are performed using MATLAB/Simulink and SimPowerSystems packages and results are presented to verify the effectiveness of the proposed system.

  3. Argon Cluster Sputtering Source for ToF-SIMS Depth Profiling of Insulating Materials: High Sputter Rate and Accurate Interfacial Information.

    Science.gov (United States)

    Wang, Zhaoying; Liu, Bingwen; Zhao, Evan W; Jin, Ke; Du, Yingge; Neeway, James J; Ryan, Joseph V; Hu, Dehong; Zhang, Kelvin H L; Hong, Mina; Le Guernic, Solenne; Thevuthasan, Suntharampilai; Wang, Fuyi; Zhu, Zihua

    2015-08-01

    The use of an argon cluster ion sputtering source has been demonstrated to perform superiorly relative to traditional oxygen and cesium ion sputtering sources for ToF-SIMS depth profiling of insulating materials. The superior performance has been attributed to effective alleviation of surface charging. A simulated nuclear waste glass (SON68) and layered hole-perovskite oxide thin films were selected as model systems because of their fundamental and practical significance. Our results show that high sputter rates and accurate interfacial information can be achieved simultaneously for argon cluster sputtering, whereas this is not the case for cesium and oxygen sputtering. Therefore, the implementation of an argon cluster sputtering source can significantly improve the analysis efficiency of insulating materials and, thus, can expand its applications to the study of glass corrosion, perovskite oxide thin film characterization, and many other systems of interest.

  4. Nonlinear System Identification and Behavioral Modeling

    CERN Document Server

    Huq, Kazi Mohammed Saidul; Kabir, A F M Sultanul

    2010-01-01

    The problem of determining a mathematical model for an unknown system by observing its input-output data pair is generally referred to as system identification. A behavioral model reproduces the required behavior of the original analyzed system, such as there is a one-to-one correspondence between the behavior of the original system and the simulated system. This paper presents nonlinear system identification and behavioral modeling using a work assignment.

  5. A View of Earth System Model Development

    Institute of Scientific and Technical Information of China (English)

    ZHOU Tianjun; YU Yongqiang; WANG Bin

    2009-01-01

    This paper gives a definition of earth system model and shows three development phases of it, including physical climate system model, earth climate system model, and earth system model, based on an inves-tigation of climate system models in the world. It provides an expatiation on the strategic significance of future development of earth system model, an introduction of some representative scientific research plans on development of earth system model home and abroad, and a review of its status and trends based on the models of the fourth assessment report (AR4) of the Intergovernmental Panel on Climate Change (IPCC).Some suggestions on future development of earth system model in China are given, which are expected to be helpful to advance the development.

  6. Floral biology and reproductive mechanisms of the Ocimum canum Sims (Lamiaceae

    Directory of Open Access Journals (Sweden)

    Cláudio Lúcio Fernandes Amaral

    2008-06-01

    Full Text Available The Ocimum genus (Lamiaceae presents essential oils used in the pharmaceutical, perfume, cosmetics and culinary industries. The aim of this paper was to study the fl oral biology and breeding mechanisms of Ocimum canum Sims. in relation to improved plant breeding. Ocimum canum has inflorescences with white, protandrous and hermaphoditic flowers. The osmophores are located at the anthers and stigma. Anthesis occurs between 10:30 and 11:30 a.m. The main fl oral visitors were bees of the Apis and Augochloropsis genuses. Ocimum canum presents a breeding system with a predominance of outcrossing that possibly demonstrates the wide reproductive flexibility of this species.

  7. Isotopic imaging of refractory inclusions in meteorites with the NanoSIMS 50L

    Energy Technology Data Exchange (ETDEWEB)

    Ito, Motoo [Robert M. Walker Laboratory for Space Science, ARES, NASA Johnson Space Center, 2101 NASA Parkway, Houston, TX 77573 (United States)], E-mail: motoo.ito-1@nasa.gov; Messenger, Scott [Robert M. Walker Laboratory for Space Science, ARES, NASA Johnson Space Center, 2101 NASA Parkway, Houston, TX 77573 (United States)], E-mail: scott.r.messenger@nasa.gov

    2008-12-15

    Oxygen isotopic micro-distributions within and among silicate and oxide minerals in a meteorite were measured with the JSC NanoSIMS 50L by isotopic imaging. High precision isotopic images with micrometer-scale resolution revealed detailed O isotope distributions within CAI minerals. Small-scale heterogeneous distributions of O isotopes constrain the history of isotopic exchange mechanisms in the CAI during and since its formation in the early solar system. We describe the development O isotopic imaging of insulating minerals with high precision of {+-}6 and 3 per mille for {delta}{sup 17}O and {delta}{sup 18}O, respectively.

  8. Cluster SIMS Microscope Mode Mass Spectrometry Imaging

    CERN Document Server

    Kiss, András; Jungmann, Julia H; Heeren, Ron M A

    2013-01-01

    Microscope mode imaging for secondary ion mass spectrometry is a technique with the promise of simultaneous high spatial resolution and high speed imaging of biomolecules from complex surfaces. Technological developments such as new position-sensitive detectors, in combination with polyatomic primary ion sources, are required to exploit the full potential of microscope mode mass spectrometry imaging, i.e. to efficiently push the limits of ultra-high spatial resolution, sample throughput and sensitivity. In this work, a C60 primary source is combined with a commercial mass microscope for microscope mode secondary ion mass spectrometry imaging. The detector setup is a pixelated detector from the Medipix/Timepix family with high-voltage post-acceleration capabilities. The mass spectral and imaging performance of the system is tested with various benchmark samples and thin tissue sections. We show that the high secondary ion yield (with respect to traditional monatomic primary ion sources) of the C60 primary ion ...

  9. A Network Contention Model for the Extreme-scale Simulator

    Energy Technology Data Exchange (ETDEWEB)

    Engelmann, Christian [ORNL; Naughton III, Thomas J [ORNL

    2015-01-01

    The Extreme-scale Simulator (xSim) is a performance investigation toolkit for high-performance computing (HPC) hardware/software co-design. It permits running a HPC application with millions of concurrent execution threads, while observing its performance in a simulated extreme-scale system. This paper details a newly developed network modeling feature for xSim, eliminating the shortcomings of the existing network modeling capabilities. The approach takes a different path for implementing network contention and bandwidth capacity modeling using a less synchronous and accurate enough model design. With the new network modeling feature, xSim is able to simulate on-chip and on-node networks with reasonable accuracy and overheads.

  10. Paraventricular nucleus Sim1 neuron ablation mediated obesity is resistant to high fat diet.

    Directory of Open Access Journals (Sweden)

    Dong Xi

    Full Text Available Single minded 1 (SIM1 is a transcription factor involved in brain patterning and control of energy balance. In humans, haploinsufficiency of SIM1 causes early-onset obesity. Mice deficient in the homologous gene, SIM1, also exhibit early onset obesity and increased sensitivity to a high fat diet. SIM1 is expressed in several areas of the brain implicated in control of energy balance including the paraventricular nucleus (PVN, the supraoptic nucleus (SON, the medial amygdala and nucleus of the lateral olfactory tract. We have previously shown that mice with global Sim1 neuron ablation exhibit obesity with hyperphagia as the primary defect. The PVN has a critical role in feeding and in high-fat appetite, thus, we sought to determine the effect of Sim1 neuron ablation limited to the PVN. We achieved PVN-SIM1 limited ablation through stereotactic injection of diphtheria toxin into the PVN of Sim1Cre-iDTR mice. The specificity of this ablation was confirmed by immunohistochemistry and quantitative real time PCR of the PVN, supraoptic nucleus and the amygdala. Mice with PVN Sim1 neuron ablation, similar to mice with global Sim1 neuron ablation, exhibit early onset obesity with hyperphagia as the primary defect. However, PVN-Sim1 neuron ablated mice have a decreased response to fasting-induced hyperphagia. Consistent with this decrement, PVN-Sim1 neuron ablated mice have a decreased hyperphagic response to PVN injection of agouti-related peptide (AgRP. When PVN-Sim1 neuron ablated mice are placed on a high fat diet, surprisingly, their intake decreases and they actually lose weight. When allowed ad lib access to high fat diet and normal chow simultaneously, PVN-Sim1 neuron ablated mice exhibit overall decreased intake. That is, in PVN-Sim1 neuron ablated mice, access to fat suppresses overall appetite.

  11. Using ToF-SIMS to study industrial surface phenomena

    Science.gov (United States)

    Smentkowski, Vincent S.; Keenan, Michael R.; Arlinghaus, Henrik

    2016-10-01

    Time of flight secondary ion mass spectrometry (ToF-SIMS) is frequently used to analyze industrial samples since it offers high (ppb) detection sensitivity, very high surface specificity (analysis of the top 1-3 surface layers during a spectral/image acquisition), high mass resolution (allowing the analyst the ability to separate Cu from C5H3 for instance), the ability to detect hydrogen, high depth resolution for depth profile measurements, and detection of high-mass fragments associated with molecular species/additives. In this manuscript, we demonstrate the advantages of ToF-SIMS including the ability to measure trace quantities of unexpected species on the surfaces of devices, and the ability to extract high-mass resolution information from data sets which were collected at degraded mass resolution. The importance of applying unbiased multivariate statistical analysis (MVSA) to the complete set of measured data is also demonstrated.

  12. Type Ia supernova rate at $z \\sim 0.1$

    CERN Document Server

    Hardin, D P; Alard, C; Albert, J N; Amadon, A; Andersen, J; Ansari, R; Aubourg, E; Bareyre, P; Bauer, F; Beaulieu, J P; Blanc, G; Bouquet, A; Char, S; Charlot, X; Couchot, F; Coutures, C; Derue, F; Ferlet, R; Glicenstein, J F; Goldman, B; Gould, A; Graff, D; Gros, M H; Haïssinski, J; Hamilton, J C; Kat, J; Kim, A; Lasserre, T; Lesquoy, E; Loup, C; Magneville, C; Mansoux, B; Marquette, J B; Maurice, E; Milshtein, A I; Moniez, M; Palanque-Delabrouille, Nathalie; Perdereau, O; Prévôt, L; Regnault, N; Rich, J; Spiro, Michel; Vidal-Madjar, A; Vigroux, L; Zylberajch, S

    2000-01-01

    We present the EROS nearby supernova ($z \\sim 0.02 - 0.2$) search and the analysis of the first year of data (1997). A total of 80 square degrees were surveyed. Eight supernov{\\ae} were detected, four of which were spectroscopically identified as type Ia supernov{\\ae}. The search efficiency was determined with a Monte-Carlo simulation taking into account the efficiencies for both supernova detection and host galaxy identification. Assuming that for a given galaxy the supernova rate is proportional to the galactic luminosity, we compute a type Ia supernova explosion rate of: ${\\cal R} = 0.44 {}_{-0.21}^{+0.35} {}_{-0.07}^{+0.13} h^2: / 10^{10} \\lbsun / 100 {\\rm yrs}$ at an average redshift of $\\sim 0.1$ where the errors are respectively statistical and systematic (type misidentification included).

  13. System identification application using Hammerstein model

    Indian Academy of Sciences (India)

    SABAN OZER; HASAN ZORLU; SELCUK METE

    2016-06-01

    Generally, memoryless polynomial nonlinear model for nonlinear part and finite impulse response (FIR) model or infinite impulse response model for linear part are preferred in Hammerstein models in literature. In this paper, system identification applications of Hammerstein model that is cascade of nonlinear second order volterra and linear FIR model are studied. Recursive least square algorithm is used to identify the proposed Hammerstein model parameters. Furthermore, the results are compared to identify the success of proposed Hammerstein model and different types of models

  14. SimBasin: serious gaming for integrated decision-making in the Magdalena-Cauca basin

    Science.gov (United States)

    Craven, Joanne; Angarita, Hector; Corzo, Gerald

    2016-04-01

    The Magdalena-Cauca macrobasin covers 24% of the land area of Colombia, and provides more than half of the country's economic potential. The basin is also home a large proportion of Colombia's biodiversity. These conflicting demands have led to problems in the basin, including a dramatic fall in fish populations, additional flooding (such as the severe nationwide floods caused by the La Niña phenomenon in 2011), and habitat loss. It is generally believed that the solution to these conflicts is to manage the basin in a more integrated way, and bridge the gaps between decision-makers in different sectors and scientists. To this end, inter-ministerial agreements are being formulated and a decision support system is being developed by The Nature Conservancy Colombia. To engage stakeholders in this process SimBasin, a "serious game", has been developed. It is intended to act as a catalyst for bringing stakeholders together, an illustration of the uncertainties, relationships and feedbacks in the basin, and an accessible introduction to modelling and decision support for non-experts. During the game, groups of participants are led through a 30 year future development of the basin, during which they take decisions about the development of the basin and see the impacts on four different sectors: agriculture, hydropower, flood risk, and environment. These impacts are displayed through seven indicators, which players should try to maintain above critical thresholds. To communicate the effects of uncertainty and climate variability, players see the actual value of the indicator and also a band of possible values, so they can see if their decisions have actually reduced risk or if they just "got lucky". The game works as a layer on top of a WEAP water resources model of the basin, adapted from a basin-wide model already created, so the fictional game basin is conceptually similar to the Magdalena-Cauca basin. The game is freely available online, and new applications are being

  15. TOF-SIMS imaging of protein adsorption on dialysis membrane

    Science.gov (United States)

    Aoyagi, Satoka; Hayama, Msayo; Hasegawa, Urara; Sakai, Kiyotaka; Hoshi, Takahiro; Kudo, Masahiro

    2004-06-01

    Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is capable of chemical imaging of proteins on insulated samples such as hollow-fiber dialysis membranes. Albumin loss and a lowering of diffusive permeability caused by protein adsorption on dialysis membranes should be reduced in order to enhance dialysis adequacy of the patients. Bovine serum albumin (BSA)-adsorbed hollow-fiber dialysis membranes were tested in the present study. TOF-SIMS images and spectra of both native membranes and BSA-adsorbed membranes were compared in order to identify secondary ions related to BSA and membranes. Peaks of secondary ions related to BSA and each membrane were selected by means of information theory, and they are characterized by principal component analysis (PCA). Chemical images of BSA adsorption on both native and treated membranes were obtained to find that BSA permeability and interaction between the membranes and BSA definitely depend on the properties of a membrane. TOF-SIMS imaging obtained with information theory is a powerful tool to estimate protein adsorption on the dialysis membranes.

  16. SIMS analysis: Development and evaluation 1995 summary report

    Energy Technology Data Exchange (ETDEWEB)

    Groenewold, G.S.; Appelhans, A.D.; Ingram, J.C.; Delmore, J.E.; Dahl, D.A.

    1995-10-01

    Secondary ion mass spectrometry (SIMS) was evaluated for characterizing Hg salts. It was found that sulfate and chloride species could be identified directly without sample preparation. Mercuric oxide could be identified by complexation with formic acid. Hg nitrates could be identified by complexation with cyclohexylamine (CHA). Laser desorption ion trap MS was evaluated for characterizing EDTA on environmental samples. No intact EDTA ions were observed, but a series of EDTA fragment ions were visible, particularly on basalt and soil. An ion trap SIMS was developed: a perrhenate ion gun was interfaced to a Teledyne ion trap spectrometer, and the entire device was mounted on a cart. The technology was demonstrated using a prototype ion trap SIMS instrument for detecting Hg{center_dot}CHA complexes formed from nitrate salts. Intensity of the ion gun was improved, and the surface damage of the particle was small, and ion gun technology transfer to Phi-Evans, Inc. is being considered. Two technology end users are at INEL`s Central Facilities Area 674 pond and acid pit of the Radioactive Waste Management Complex; target problem at both sites is the need for Hg speciation on soil samples.

  17. Modeling of economic systems with Petri nets

    Directory of Open Access Journals (Sweden)

    Pavel Valeryevich Skorodumov

    2014-09-01

    Full Text Available Modeling is one of the most important tools to study complex systems. Components of both continuous and discrete nature are present in the behavior of contemporary economic systems. The article uses formalism of nested hybrid Petri nets as a tool to study complex economic systems. The author describes basic approaches of simulation modelling, concepts of classical Petri nets, modified means of nested hybrid Petri nets, benefits of their use for systems modeling. The article presents the concept of a universal system of simulation modeling. On the basis of considered approaches the article proposes to develop a universal system of simulation modeling on the basis of the modified machine Petri nets

  18. Modeling Power Systems as Complex Adaptive Systems

    Energy Technology Data Exchange (ETDEWEB)

    Chassin, David P.; Malard, Joel M.; Posse, Christian; Gangopadhyaya, Asim; Lu, Ning; Katipamula, Srinivas; Mallow, J V.

    2004-12-30

    Physical analogs have shown considerable promise for understanding the behavior of complex adaptive systems, including macroeconomics, biological systems, social networks, and electric power markets. Many of today's most challenging technical and policy questions can be reduced to a distributed economic control problem. Indeed, economically based control of large-scale systems is founded on the conjecture that the price-based regulation (e.g., auctions, markets) results in an optimal allocation of resources and emergent optimal system control. This report explores the state-of-the-art physical analogs for understanding the behavior of some econophysical systems and deriving stable and robust control strategies for using them. We review and discuss applications of some analytic methods based on a thermodynamic metaphor, according to which the interplay between system entropy and conservation laws gives rise to intuitive and governing global properties of complex systems that cannot be otherwise understood. We apply these methods to the question of how power markets can be expected to behave under a variety of conditions.

  19. Neuman systems model in holland: an update.

    Science.gov (United States)

    Merks, André; Verberk, Frans; de Kuiper, Marlou; Lowry, Lois W

    2012-10-01

    The authors of this column, leading members of the International Neuman Systems Model Association, provide an update on the use of Neuman systems model in Holland and document the various changes in The Netherlands that have influenced the use of the model in that country. The model's link to systems theory and stress theory are discussed, as well as a shift to greater emphasis on patient self-management. The model is also linked to healthcare quality improvement and interprofessional collaboration in Holland.

  20. New model systems for experimental evolution.

    Science.gov (United States)

    Collins, Sinéad

    2013-07-01

    Microbial experimental evolution uses a few well-characterized model systems to answer fundamental questions about how evolution works. This special section highlights novel model systems for experimental evolution, with a focus on marine model systems that can be used to understand evolutionary responses to global change in the oceans.

  1. Performance modeling of automated manufacturing systems

    Science.gov (United States)

    Viswanadham, N.; Narahari, Y.

    A unified and systematic treatment is presented of modeling methodologies and analysis techniques for performance evaluation of automated manufacturing systems. The book is the first treatment of the mathematical modeling of manufacturing systems. Automated manufacturing systems are surveyed and three principal analytical modeling paradigms are discussed: Markov chains, queues and queueing networks, and Petri nets.

  2. Modeling human operator involvement in robotic systems

    NARCIS (Netherlands)

    Wewerinke, P.H.

    1991-01-01

    A modeling approach is presented to describe complex manned robotic systems. The robotic system is modeled as a (highly) nonlinear, possibly time-varying dynamic system including any time delays in terms of optimal estimation, control and decision theory. The role of the human operator(s) is modeled

  3. Wind speed and direction predictions by WRF and WindSim coupling over Nygårdsfjell

    Science.gov (United States)

    Bilal, M.; Solbakken, K.; Birkelund, Y.

    2016-09-01

    In this study, the performance of the mesoscale meteorological Weather Research and Forecast (WRF) model coupled with the microscale computational fluid dynamics based model WindSim is investigated and compared to the performance of WRF alone. The two model set-ups, WRF and WRF-WindSim, have been tested on three high-wind events in February, June and October, over a complex terrain at the Nygårdsfjell wind park in Norway. The wind speeds and wind directions are compared to measurements and the results are evaluated based on root mean square error, bias and standard deviation error. Both model set-ups are able to reproduce the high wind events. For the winter month February the WRF-WindSim performed better than WRF alone, with the root mean square error (RMSE) decreasing from 2.86 to 2.38 and standard deviation error (STDE) decreasing from 2.69 to 2.37. For the two other months no such improvements were found. The best model performance was found in October where the WRF had a RMSE of 1.76 and STDE of 1.68. For June, both model set-ups underestimate the wind speed. Overall, the adopted coupling method of using WRF outputs as virtual climatology for coupling WRF and WindSim did not offer a significant improvement over the complex terrain of Nygårdsfjell. However, the proposed coupling method offers high degree of simplicity when it comes to its application. Further testing is recommended over larger number of test cases to make a significant conclusion.

  4. Visual computing model for immune system and medical system.

    Science.gov (United States)

    Gong, Tao; Cao, Xinxue; Xiong, Qin

    2015-01-01

    Natural immune system is an intelligent self-organizing and adaptive system, which has a variety of immune cells with different types of immune mechanisms. The mutual cooperation between the immune cells shows the intelligence of this immune system, and modeling this immune system has an important significance in medical science and engineering. In order to build a comprehensible model of this immune system for better understanding with the visualization method than the traditional mathematic model, a visual computing model of this immune system was proposed and also used to design a medical system with the immune system, in this paper. Some visual simulations of the immune system were made to test the visual effect. The experimental results of the simulations show that the visual modeling approach can provide a more effective way for analyzing this immune system than only the traditional mathematic equations.

  5. Externalizing Behaviour for Analysing System Models

    NARCIS (Netherlands)

    Ivanova, Marieta Georgieva; Probst, Christian W.; Hansen, René Rydhof; Kammüller, Florian

    Systems models have recently been introduced to model organisationsandevaluate their vulnerability to threats and especially insiderthreats. Especially for the latter these models are very suitable, since insiders can be assumed to have more knowledge about the attacked organisation than outside

  6. Computer-assisted learning and simulation lab with 40 DentSim units.

    Science.gov (United States)

    Welk, A; Maggio, M P; Simon, J F; Scarbecz, M; Harrison, J A; Wicks, R A; Gilpatrick, R O

    2008-01-01

    There are an increasing number of studies about the computer-assisted dental patient simulator DentSim (DenX, Israel), by which dental students can acquire cognitive motor skills in a multimedia environment. However, only a very few studies have been published dealing with efficient ways to use and to manage a computer-assisted dental simulation lab with 40 DentSim units. The current approach and optimization steps of the College of Dentistry at the University of Tennessee Health Science Center were evaluated based on theoretical and practical tests and by questionnaires (partial 5-point Likert scale). Half of the D1 (first-year) students (2004/05) already had experience with computer-assisted learning at their undergraduate college and most of the students even expected to be taught via computer-assisted learning systems (83.5%) at the dental school. 87.3% of the students working with DentSim found the experience to be very interesting or interesting. Before the students carried out the preparation exercises, they were trained in the skills they needed to work with the sophisticated technology, eg, system-specific operation skills (66.6% attained maximal reachable points) and information searching skills (79.5% attained maximal reachable points). The indirect knowledge retention rate / incidental learning rate of the preparation exercises in the sense of computer-assisted problem-oriented learning regarding anatomy, preparation procedures, and cavity design was promising. The wide- ranging number of prepared teeth needed to acquire the necessary skills shows the varied individual learning curves of the students. The acceptance of, and response to, additional elective training time in the computer-assisted simulation lab were very high. Integrating the DentSim technology into the existing curriculum is a way to improve dental education, but it is also a challenge for both teachers and the students. It requires a shift in both curriculum and instructional goals that

  7. CONTROL SYSTEM IDENTIFICATION THROUGH MODEL MODULATION METHODS

    Science.gov (United States)

    identification has been achieved by using model modulation techniques to drive dynamic models into correspondence with operating control systems. The system ... identification then proceeded from examination of the model and the adaptive loop. The model modulation techniques applied to adaptive control

  8. Chemometric and Statistical Analyses of ToF-SIMS Spectra of Increasingly Complex Biological Samples

    Energy Technology Data Exchange (ETDEWEB)

    Berman, E S; Wu, L; Fortson, S L; Nelson, D O; Kulp, K S; Wu, K J

    2007-10-24

    Characterizing and classifying molecular variation within biological samples is critical for determining fundamental mechanisms of biological processes that will lead to new insights including improved disease understanding. Towards these ends, time-of-flight secondary ion mass spectrometry (ToF-SIMS) was used to examine increasingly complex samples of biological relevance, including monosaccharide isomers, pure proteins, complex protein mixtures, and mouse embryo tissues. The complex mass spectral data sets produced were analyzed using five common statistical and chemometric multivariate analysis techniques: principal component analysis (PCA), linear discriminant analysis (LDA), partial least squares discriminant analysis (PLSDA), soft independent modeling of class analogy (SIMCA), and decision tree analysis by recursive partitioning. PCA was found to be a valuable first step in multivariate analysis, providing insight both into the relative groupings of samples and into the molecular basis for those groupings. For the monosaccharides, pure proteins and protein mixture samples, all of LDA, PLSDA, and SIMCA were found to produce excellent classification given a sufficient number of compound variables calculated. For the mouse embryo tissues, however, SIMCA did not produce as accurate a classification. The decision tree analysis was found to be the least successful for all the data sets, providing neither as accurate a classification nor chemical insight for any of the tested samples. Based on these results we conclude that as the complexity of the sample increases, so must the sophistication of the multivariate technique used to classify the samples. PCA is a preferred first step for understanding ToF-SIMS data that can be followed by either LDA or PLSDA for effective classification analysis. This study demonstrates the strength of ToF-SIMS combined with multivariate statistical and chemometric techniques to classify increasingly complex biological samples

  9. Two sustainable energy system analysis models

    DEFF Research Database (Denmark)

    Lund, Henrik; Goran Krajacic, Neven Duic; da Graca Carvalho, Maria

    2005-01-01

    This paper presents a comparative study of two energy system analysis models both designed with the purpose of analysing electricity systems with a substantial share of fluctuating renewable energy.......This paper presents a comparative study of two energy system analysis models both designed with the purpose of analysing electricity systems with a substantial share of fluctuating renewable energy....

  10. Sensitivity of a regional climate model to land surface parameterization schemes for East Asian summer monsoon simulation

    Science.gov (United States)

    Li, Wenkai; Guo, Weidong; Xue, Yongkang; Fu, Congbin; Qiu, Bo

    2016-10-01

    Land surface processes play an important role in the East Asian Summer Monsoon (EASM) system. Parameterization schemes of land surface processes may cause uncertainties in regional climate model (RCM) studies for the EASM. In this paper, we investigate the sensitivity of a RCM to land surface parameterization (LSP) schemes for long-term simulation of the EASM. The Weather Research and Forecasting (WRF) Model coupled with four different LSP schemes (Noah-MP, CLM4, Pleim-Xiu and SSiB), hereafter referred to as Sim-Noah, Sim-CLM, Sim-PX and Sim-SSiB respectively, have been applied for 22-summer EASM simulations. The 22-summer averaged spatial distributions and strengths of downscaled large-scale circulation, 2-m temperature and precipitation are comprehensively compared with ERA-Interim reanalysis and dense station observations in China. Results show that the downscaling ability of RCM for the EASM is sensitive to LSP schemes. Furthermore, this study confirms that RCM does add more information to the EASM compared to reanalysis that imposes the lateral boundary conditions (LBC) because it provides 2-m temperature and precipitation that are with higher resolution and more realistic compared to LBC. For 2-m temperature and monsoon precipitation, Sim-PX and Sim-SSiB simulations are more consistent with observation than simulations of Sim-Noah and Sim-CLM. To further explore the physical and dynamic mechanisms behind the RCM sensitivity to LSP schemes, differences in the surface energy budget between simulations of Ens-Noah-CLM (ensemble mean averaging Sim-Noah and Sim-CLM) and Ens-PX-SSiB (ensemble mean averaging Sim-PX and Sim-SSiB) are investigated and their subsequent impacts on the atmospheric circulation are analyzed. It is found that the intensity of simulated sensible heat flux over Asian continent in Ens-Noah-CLM is stronger than that in Ens-PX-SSiB, which induces a higher tropospheric temperature in Ens-Noah-CLM than in Ens-PX-SSiB over land. The adaptive

  11. Graphical Model Debugger Framework for Embedded Systems

    DEFF Research Database (Denmark)

    Zeng, Kebin; Guo, Yu; Angelov, Christo K.

    2010-01-01

    Model Driven Software Development has offered a faster way to design and implement embedded real-time software by moving the design to a model level, and by transforming models to code. However, the testing of embedded systems has remained at the code level. This paper presents a Graphical Model...... Debugger Framework, providing an auxiliary avenue of analysis of system models at runtime by executing generated code and updating models synchronously, which allows embedded developers to focus on the model level. With the model debugger, embedded developers can graphically test their design model...

  12. Particle Tracking Model (PTM) with Coastal Modeling System (CMS)

    Science.gov (United States)

    2014-10-31

    System ( CMS ) 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER...www.erdc.usace.army.mil/Missions/WaterResources/CIRP.aspx Coastal Inlets Research Program Particle Tracking Model (PTM) with Coastal Modeling System ( CMS ) The...System ( CMS ), which provides coupled wave and current forcing for PTM simulations. CMS -PTM is implemented in the Surface-water Modeling System, a

  13. A ’Millipede’ scanner model - Energy consumption and performance

    NARCIS (Netherlands)

    Engelen, Johan B.C.; Khatib, Mohammed G.

    2008-01-01

    This short report (1) describes an energy model for the seek and read/write operations in a mass-balanced Y-scanner for parallel-probe storage by IBM [1] and (2) updates the settings of the MEMS model in DiskSim with recent published figures from this XY-scanner. To speedup system simulations, a str

  14. SimRiver: Environmental Modeling Software for the Science Classroom

    Science.gov (United States)

    Hoffer, Jeannette; Mayama, Shigeki; Lingle, Kristin; Conroy, Kathryn; Julius, Matthew

    2011-01-01

    While students may acknowledge the impact that land use and development have on our environment, they do not necessarily understand the relationship between human activities and ecosystem responses. Therefore, the nature of the relationships leaves the science teacher to most often present information in a purely narrative form without any…

  15. Cluster SIMS with a hybrid quadrupole time-of-flight mass spectrometer

    Science.gov (United States)

    Carado, A.; Kozole, J.; Passarelli, M.; Winograd, N.; Loboda, A.; Wingate, J.

    2008-12-01

    The new physics associated with cluster SIMS, i.e. reduced chemical damage enabling 3D dynamic imaging, and increased ion yields from organics samples, suggests that cluster sources may be suitable for use on commercial MALDI/electrospray (ESI) instruments. In efforts to investigate this approach to secondary ion analysis, a 20 keV C 60+ primary ion source by Ionoptika Ltd. was fitted to a commercial LC/MS/MS instrument; the QSTAR ® XL system by Applied Biosystems/MDS Sciex. This instrument is capable of MS/MS, ion trapping, chemical imaging, and utilizes an orthogonal ToF, enabling use of a DC primary ion beam for imaging and data collection. The system employs high nitrogen pressure, typically several millitorr, in the sample region, as opposed to large extraction voltages, to facilitate the transmission of the secondary ions to the ToF region. In these initial experiments, it was demonstrated that ion signal generated by C 60+ bombardment can be enhanced by trapping in the collision cell and that secondary ions can fragment via collision induced dissociation (CID) to yield MS/MS information. In ToF-MS mode, efficiencies are comparable with pulsed primary beam ToF-SIMS instruments. Mass resolution of over 12,000 is routinely observed with mass accuracy in the 2 ppm range, which has important implications in accurate ion mapping in imaging mode.

  16. Cluster SIMS with a hybrid quadrupole time-of-flight mass spectrometer

    Energy Technology Data Exchange (ETDEWEB)

    Carado, A. [Pennsylvania State University, 104 Chemistry Building, University Park, PA 16802 (United States)], E-mail: ajc161@psu.edu; Kozole, J.; Passarelli, M.; Winograd, N. [Pennsylvania State University, 104 Chemistry Building, University Park, PA 16802 (United States); Loboda, A.; Wingate, J. [Applied Biosystems/MDS Sciex, 71 Four Valley Drive, Concord, Ontario, CA (United States)

    2008-12-15

    The new physics associated with cluster SIMS, i.e. reduced chemical damage enabling 3D dynamic imaging, and increased ion yields from organics samples, suggests that cluster sources may be suitable for use on commercial MALDI/electrospray (ESI) instruments. In efforts to investigate this approach to secondary ion analysis, a 20 keV C{sub 60}{sup +} primary ion source by Ionoptika Ltd. was fitted to a commercial LC/MS/MS instrument; the QSTAR XL system by Applied Biosystems/MDS Sciex. This instrument is capable of MS/MS, ion trapping, chemical imaging, and utilizes an orthogonal ToF, enabling use of a DC primary ion beam for imaging and data collection. The system employs high nitrogen pressure, typically several millitorr, in the sample region, as opposed to large extraction voltages, to facilitate the transmission of the secondary ions to the ToF region. In these initial experiments, it was demonstrated that ion signal generated by C{sub 60}{sup +} bombardment can be enhanced by trapping in the collision cell and that secondary ions can fragment via collision induced dissociation (CID) to yield MS/MS information. In ToF-MS mode, efficiencies are comparable with pulsed primary beam ToF-SIMS instruments. Mass resolution of over 12,000 is routinely observed with mass accuracy in the 2 ppm range, which has important implications in accurate ion mapping in imaging mode.

  17. Development of instrumentation for routine ToF-SIMS imaging analysis of biological material

    Science.gov (United States)

    Cliff, B.; Lockyer, N. P.; Corlett, C.; Vickerman, J. C.

    2003-01-01

    The routine analysis of frozen-hydrated biological material is a goal that is highly sought after in the ToF-SIMS community. To this end we have developed a system based on an existing protocol developed elsewhere, but with several crucial advances. Here we report on the major design initiatives, some early performance characteristics and experimental data obtained. The system was designed with ease-of-use and reliability in mind in addition to performance, this should make the results repeatable. The device works on a freeze-fracture type method to expose pristine surface for SIMS analysis. An important performance characteristic that has emerged is one of time; the fracture stage can be cooled down to operating temperature within 30 min beginning of cooling. This is important as it minimises dead time at the beginning of an experimental session. We also present here images of freeze-fractured liposomes obtained with this hardware, showing two differing fracture regimes, we believe they are of similar quality to those obtained using other techniques.

  18. Analysis hierarchical model for discrete event systems

    Science.gov (United States)

    Ciortea, E. M.

    2015-11-01

    The This paper presents the hierarchical model based on discrete event network for robotic systems. Based on the hierarchical approach, Petri network is analysed as a network of the highest conceptual level and the lowest level of local control. For modelling and control of complex robotic systems using extended Petri nets. Such a system is structured, controlled and analysed in this paper by using Visual Object Net ++ package that is relatively simple and easy to use, and the results are shown as representations easy to interpret. The hierarchical structure of the robotic system is implemented on computers analysed using specialized programs. Implementation of hierarchical model discrete event systems, as a real-time operating system on a computer network connected via a serial bus is possible, where each computer is dedicated to local and Petri model of a subsystem global robotic system. Since Petri models are simplified to apply general computers, analysis, modelling, complex manufacturing systems control can be achieved using Petri nets. Discrete event systems is a pragmatic tool for modelling industrial systems. For system modelling using Petri nets because we have our system where discrete event. To highlight the auxiliary time Petri model using transport stream divided into hierarchical levels and sections are analysed successively. Proposed robotic system simulation using timed Petri, offers the opportunity to view the robotic time. Application of goods or robotic and transmission times obtained by measuring spot is obtained graphics showing the average time for transport activity, using the parameters sets of finished products. individually.

  19. Extensions in model-based system analysis

    OpenAIRE

    Graham, Matthew R.

    2007-01-01

    Model-based system analysis techniques provide a means for determining desired system performance prior to actual implementation. In addition to specifying desired performance, model-based analysis techniques require mathematical descriptions that characterize relevant behavior of the system. The developments of this dissertation give ex. tended formulations for control- relevant model estimation as well as model-based analysis conditions for performance requirements specified as frequency do...

  20. Inductive modelling of an entrepreneurial system

    OpenAIRE

    Yearworth, M

    2010-01-01

    We describe the development of a novel approach to generating theory about the behaviour of an entrepreneurial or start-up system. The new technology business creation system in and around the cities of Bath and Bristol in the UK was analysed using an inductive modelling approach that hybridises grounded theory with system dynamics, a technique we have called grounded systems modelling. Three models that represent the stages of development of an idea through to successful exploitation have be...

  1. Control model for reconfigurable assembly systems

    Institute of Scientific and Technical Information of China (English)

    Yu Jianfeng; Yin Yuehong; Chen Zhaoneng

    2005-01-01

    This paper proposes knowledge based object-oriented timed colored Petri net, a modeling method for reconfigurable assembly systems. Combining knowledge and object-oriented method into timed colored Petri net, a comprehensive and powerful representation model for control of RAS is obtained. With object-oriented method the whole system can be decomposed into concrete objects explicitly, and their relationships are constructed according to the system assembly requirements. Finally, a simple assembly system modeled by the KTCOPN is presented.

  2. Verification of operation of the actuator control system using the integration the B&R Automation Studio software with a virtual model of the actuator system

    Science.gov (United States)

    Herbuś, K.; Ociepka, P.

    2017-08-01

    In the work is analysed a sequential control system of a machine for separating and grouping work pieces for processing. Whereas, the area of the considered problem is related with verification of operation of an actuator system of an electro-pneumatic control system equipped with a PLC controller. Wherein to verification is subjected the way of operation of actuators in view of logic relationships assumed in the control system. The actuators of the considered control system were three drives of linear motion (pneumatic cylinders). And the logical structure of the system of operation of the control system is based on the signals flow graph. The tested logical structure of operation of the electro-pneumatic control system was implemented in the Automation Studio software of B&R company. This software is used to create programs for the PLC controllers. Next, in the FluidSIM software was created the model of the actuator system of the control system of a machine. To verify the created program for the PLC controller, simulating the operation of the created model, it was utilized the approach of integration these two programs using the tool for data exchange in the form of the OPC server.

  3. MATLAB/Simulink Framework for Modeling Complex Coolant Flow Configurations of Advanced Automotive Thermal Management Systems

    Energy Technology Data Exchange (ETDEWEB)

    Titov, Gene; Lustbader, Jason; Leighton, Daniel; Kiss, Tibor

    2016-04-05

    The National Renewable Energy Laboratory's (NREL's) CoolSim MATLAB/Simulink modeling framework was extended by including a newly developed coolant loop solution method aimed at reducing the simulation effort for arbitrarily complex thermal management systems. The new approach does not require the user to identify specific coolant loops and their flow. The user only needs to connect the fluid network elements in a manner consistent with the desired schematic. Using the new solution method, a model of NREL's advanced combined coolant loop system for electric vehicles was created that reflected the test system architecture. This system was built using components provided by the MAHLE Group and included both air conditioning and heat pump modes. Validation with test bench data and verification with the previous solution method were performed for 10 operating points spanning a range of ambient temperatures between -2 degrees C and 43 degrees C. The largest root mean square difference between pressure, temperature, energy and mass flow rate data and simulation results was less than 7%.

  4. Modelling Immune System: Principles, Models,Analysis and Perspectives

    Institute of Scientific and Technical Information of China (English)

    Xiang-hua Li; Zheng-xuan Wang; Tian-yang Lu; Xiang-jiu Che

    2009-01-01

    The biological immune system is a complex adaptive system. There are lots of benefits for building the model of the immune system. For biological researchers, they can test some hypotheses about the infection process or simulate the responses of some drugs. For computer researchers, they can build distributed, robust and fault tolerant networks inspired by the functions of the immune system. This paper provides a comprehensive survey of the literatures on modelling the immune system. From the methodology perspective, the paper compares and analyzes the existing approaches and models, and also demonstrates the focusing research effort on the future immune models in the next few years.

  5. Comparison of Photovoltaic Models in the System Advisor Model: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Blair, N. J.; Dobos, A. P.; Gilman, P.

    2013-08-01

    The System Advisor Model (SAM) is free software developed by the National Renewable Energy Laboratory (NREL) for predicting the performance of renewable energy systems and analyzing the financial feasibility of residential, commercial, and utility-scale grid-connected projects. SAM offers several options for predicting the performance of photovoltaic (PV) systems. The model requires that the analyst choose from three PV system models, and depending on that choice, possibly choose from three module and two inverter component models. To obtain meaningful results from SAM, the analyst must be aware of the differences between the model options and their applicability to different modeling scenarios. This paper presents an overview the different PV model options and presents a comparison of results for a 200-kW system using different model options.

  6. Graphical Model Debugger Framework for Embedded Systems

    DEFF Research Database (Denmark)

    Zeng, Kebin

    2010-01-01

    Debugger Framework, providing an auxiliary avenue of analysis of system models at runtime by executing generated code and updating models synchronously, which allows embedded developers to focus on the model level. With the model debugger, embedded developers can graphically test their design model......Model Driven Software Development has offered a faster way to design and implement embedded real-time software by moving the design to a model level, and by transforming models to code. However, the testing of embedded systems has remained at the code level. This paper presents a Graphical Model...... and check the running status of the system, which offers a debugging capability on a higher level of abstraction. The framework intends to contribute a tool to the Eclipse society, especially suitable for model-driven development of embedded systems....

  7. Modeling and Identification of Multirate Systems

    Institute of Scientific and Technical Information of China (English)

    Feng DING; Tongwen CHEN

    2005-01-01

    Multirate systems are abundant in industry; for example, many soft-sensor design problems are related to modeling, parameter identification, or state estimation involving multirate systems. The study of multirate systems goes back to the early 1950's, and has become an active research area in systems and control. This paper briefly surveys the history of development in the area of multirate systems, and introduces some basic concepts and latest results on multirate systems, including a polynomial transformation technique and the lifting technique as tools for handling multirate systems, lifted state space models, parameter identification of dual-rate systems, how to determine fast single-rate models from dual-rate models and directly from dual-rate data, and a hierarchical identification method for general multirate systems. Finally, some further research topics for multirate systems are given.

  8. Simulation and Optimization of Natural Gas Treatment Process Based on UniSim%基于UniSim的天然气处理过程流程模拟与优化

    Institute of Scientific and Technical Information of China (English)

    徐宝昌; 叶昌燕

    2013-01-01

    在UniSim软件模拟系统中,对某天然气处理过程进行流程模拟,搭建天然气处理系统稳态模型,并在此基础上,以最小化能耗为目标,进行操作参数优化.结果表明:UniSim具有良好的模拟环境,能够得到准确的天然气处理系统的稳态模型.基于所建稳态模型的操作参数优化,使全装置能耗降低了6%,每年平均成本节约了48.5万元.%In UniSim system,the natural gas treatment process was simulated and steady-state model for this treatment process was built,and then based on this model,the system operating parameter were optimized.The results indicate that the UniSim has better simulation environment in setting up natural gas' s accurate steadystate model;and the operating parameter optimization can reduce energy cost by 6% and improve economic benefits dramatically with a cost saving of ¥ 485,000 per year.

  9. On Problems of Multicomponent System Maintenance Modelling

    Institute of Scientific and Technical Information of China (English)

    Tomasz Nowakowski; Sylwia Werbinka

    2009-01-01

    We present an overview of some recent developments in the area of mathematical modeling of maintenance decisions for multi-unit systems. The emphasis is on three main groups of multicomponent maintenance optimization models: the block replacement models, group maintenance models, and opportunistic maintenance models. Moreover, an example of a two-unit system maintenance process is provided in order to compare various maintenance policies.

  10. Traffic Modeling in WCDMA System Level Simulations

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Traffic modeling is a crucial element in WCDMA system level simulations. A clear understanding of the nature of traffic in the WCDMA system and subsequent selection of an appropriate random traffic model are critical to the success of the modeling enterprise. The resultant performances will evidently be of a function that our design has been well adapted to the traffic, channel and user mobility models, and these models are also accurate. In this article, our attention will be focused on modeling voice and WWW data traffic with the SBBP model and Victor model respectively.

  11. Development of the IBSAL-SimMOpt Method for the Optimization of Quality in a Corn Stover Supply Chain

    Directory of Open Access Journals (Sweden)

    Hernan Chavez

    2017-08-01

    Full Text Available Variability on the physical characteristics of feedstock has a relevant effect on the reactor’s reliability and operating cost. Most of the models developed to optimize biomass supply chains have failed to quantify the effect of biomass quality and preprocessing operations required to meet biomass specifications on overall cost and performance. The Integrated Biomass Supply Analysis and Logistics (IBSAL model estimates the harvesting, collection, transportation, and storage cost while considering the stochastic behavior of the field-to-biorefinery supply chain. This paper proposes an IBSAL-SimMOpt (Simulation-based Multi-Objective Optimization method for optimizing the biomass quality and costs associated with the efforts needed to meet conversion technology specifications. The method is developed in two phases. For the first phase, a SimMOpt tool that interacts with the extended IBSAL is developed. For the second phase, the baseline IBSAL model is extended so that the cost for meeting and/or penalization for failing in meeting specifications are considered. The IBSAL-SimMOpt method is designed to optimize quality characteristics of biomass, cost related to activities intended to improve the quality of feedstock, and the penalization cost. A case study based on 1916 farms in Ontario, Canada is considered for testing the proposed method. Analysis of the results demonstrates that this method is able to find a high-quality set of non-dominated solutions.

  12. Towards Modelling of Hybrid Systems

    DEFF Research Database (Denmark)

    Wisniewski, Rafal

    2006-01-01

    The article is an attempt to use methods of category theory and topology for analysis of hybrid systems. We use the notion of a directed topological space; it is a topological space together with a set of privileged paths. Dynamical systems are examples of directed topological spaces. A hybrid...... system consists of a number of dynamical systems that are glued together according to information encoded in the discrete part of the system. We develop a definition of a hybrid system as a functor from the category generated by a transition system to the category of directed topological spaces. Its...... directed homotopy colimit (geometric realization) is a single directed topological space. The behavior of hybrid systems can be then understood in terms of the behavior of dynamical systems through the directed homotopy colimit....

  13. Service systems concepts, modeling, and programming

    CERN Document Server

    Cardoso, Jorge; Poels, Geert

    2014-01-01

    This SpringerBrief explores the internal workings of service systems. The authors propose a lightweight semantic model for an effective representation to capture the essence of service systems. Key topics include modeling frameworks, service descriptions and linked data, creating service instances, tool support, and applications in enterprises.Previous books on service system modeling and various streams of scientific developments used an external perspective to describe how systems can be integrated. This brief introduces the concept of white-box service system modeling as an approach to mo

  14. Hydrological modelling in forested systems

    Science.gov (United States)

    This chapter provides a brief overview of forest hydrology modelling approaches for answering important global research and management questions. Many hundreds of hydrological models have been applied globally across multiple decades to represent and predict forest hydrological p...

  15. Linking galaxies to dark matter haloes at $z\\sim1$ : dependence of galaxy clustering on stellar mass and specific star formation rate

    CERN Document Server

    Kim, Jae-Woo; Lee, Seong-Kook; Edge, Alastair C; Wake, David A; Merson, Alexander I; Jeon, Yiseul

    2015-01-01

    We study the dependence of angular two-point correlation functions on stellar mass ($M_{*}$) and specific star formation rate (sSFR) of $M_{*}>10^{10}M_{\\odot}$ galaxies at $z\\sim1$. The data from UKIDSS DXS and CFHTLS covering 8.2 deg$^{2}$ sample scales larger than 100 $h^{-1}$Mpc at $z\\sim1$, allowing us to investigate the correlation between clustering, $M_{*}$, and star formation through halo modeling. Based on halo occupation distributions (HODs) of $M_{*}$ threshold samples, we derive HODs for $M_{*}$ binned galaxies, and then calculate the $M_{*}/M_{\\rm halo}$ ratio. The ratio for central galaxies shows a peak at $M_{\\rm halo}\\sim10^{12}h^{-1}M_{\\odot}$, and satellites predominantly contribute to the total stellar mass in cluster environments with $M_{*}/M_{\\rm halo}$ values of 0.01--0.02. Using star-forming galaxies split by sSFR, we find that main sequence galaxies ($\\rm log\\,sSFR/yr^{-1}\\sim-9$) are mainly central galaxies in $\\sim10^{12.5} h^{-1}M_{\\odot}$ haloes with the lowest clustering amplitu...

  16. Hubble Frontier Fields First Complete Cluster Data: Faint Galaxies at $z\\sim 5-10$ for UV Luminosity Functions and Cosmic Reionization

    CERN Document Server

    Ishigaki, Masafumi; Ouchi, Masami; Oguri, Masamune; Shimasaku, Kazuhiro; Ono, Yoshiaki

    2014-01-01

    We present the comprehensive analyses of faint dropout galaxies up to $z\\sim 10$ with the first full-depth data set of Abell 2744 lensing cluster and parallel fields completed by the Hubble Frontier Fields (HFF) program in July 2014. We identify $54$ dropouts at $z \\sim 5-10$ in the HFF fields, and strikingly enlarge the size of $z\\sim 9$ galaxy sample obtained to date. Although the number of highly magnified ($\\mu \\sim 10$) galaxies is small due to the tiny survey volume of strong lensing, our study reaches the galaxies' intrinsic luminosities comparable to the deepest-field HUDF studies. We derive UV luminosity functions with these faint dropouts, carefully evaluating the combination of observational incompleteness and lensing effects in the image plane by intensive simulations including magnification, distortion, and multiplication of images, with the evaluations of mass model dependences. Our results confirm that the faint-end slope, $\\alpha$, is as steep as $-2$ at $z \\sim 6-8$, and significantly strengt...

  17. Modeling, Control and Coordination of Helicopter Systems

    CERN Document Server

    Ren, Beibei; Chen, Chang; Fua, Cheng-Heng; Lee, Tong Heng

    2012-01-01

    Modeling, Control and Coordination of Helicopter Systems provides a comprehensive treatment of helicopter systems, ranging from related nonlinear flight dynamic modeling and stability analysis to advanced control design for single helicopter systems, and also covers issues related to the coordination and formation control of multiple helicopter systems to achieve high performance tasks. Ensuring stability in helicopter flight is a challenging problem for nonlinear control design and development. This book is a valuable reference on modeling, control and coordination of helicopter systems,providing readers with practical solutions for the problems that still plague helicopter system design and implementation. Readers will gain a complete picture of helicopters at the systems level, as well as a better understanding of the technical intricacies involved. This book also: Presents a complete picture of modeling, control and coordination for helicopter systems Provides a modeling platform for a general class of ro...

  18. Electronic Education System Model-2

    Science.gov (United States)

    Güllü, Fatih; Kuusik, Rein; Laanpere, Mart

    2015-01-01

    In this study we presented new EES Model-2 extended from EES model for more productive implementation in e-learning process design and modelling in higher education. The most updates were related to uppermost instructional layer. We updated learning processes object of the layer for adaptation of educational process for young and old people,…

  19. Network and adaptive system of systems modeling and analysis.

    Energy Technology Data Exchange (ETDEWEB)

    Lawton, Craig R.; Campbell, James E. Dr. (.; .); Anderson, Dennis James; Eddy, John P.

    2007-05-01

    This report documents the results of an LDRD program entitled ''Network and Adaptive System of Systems Modeling and Analysis'' that was conducted during FY 2005 and FY 2006. The purpose of this study was to determine and implement ways to incorporate network communications modeling into existing System of Systems (SoS) modeling capabilities. Current SoS modeling, particularly for the Future Combat Systems (FCS) program, is conducted under the assumption that communication between the various systems is always possible and occurs instantaneously. A more realistic representation of these communications allows for better, more accurate simulation results. The current approach to meeting this objective has been to use existing capabilities to model network hardware reliability and adding capabilities to use that information to model the impact on the sustainment supply chain and operational availability.

  20. On Verification Modelling of Embedded Systems

    NARCIS (Netherlands)

    Brinksma, Ed; Mader, Angelika

    2004-01-01

    Computer-aided verification of embedded systems hinges on the availability of good verification models of the systems at hand. Such models must be much simpler than full design models or specifications to be of practical value, because of the unavoidable combinatorial complexities in the verificatio

  1. Applying Modeling Tools to Ground System Procedures

    Science.gov (United States)

    Di Pasquale, Peter

    2012-01-01

    As part of a long-term effort to revitalize the Ground Systems (GS) Engineering Section practices, Systems Modeling Language (SysML) and Business Process Model and Notation (BPMN) have been used to model existing GS products and the procedures GS engineers use to produce them.

  2. System Level Modelling and Performance Estimation of Embedded Systems

    DEFF Research Database (Denmark)

    Tranberg-Hansen, Anders Sejer

    is simulation based and allows performance estimation to be carried out throughout all design phases ranging from early functional to cycle accurate and bit true descriptions of the system, modelling both hardware and software components in a unied way. Design space exploration and performance estimation...... an efficient system level design methodology, a modelling framework for performance estimation and design space exploration at the system level is required. This thesis presents a novel component based modelling framework for system level modelling and performance estimation of embedded systems. The framework...... is performed by having the framework produce detailed quantitative information about the system model under investigation. The project is part of the national Danish research project, Danish Network of Embedded Systems (DaNES), which is funded by the Danish National Advanced Technology Foundation. The project...

  3. CET exSim: mineral exploration experience via simulation

    Science.gov (United States)

    Wong, Jason C. 13Holden, Eun-Jung 1Kovesi, Peter 1McCuaig, T. Campbell 1Hronsky, Jon

    2013-08-01

    Undercover mineral exploration is a challenging task as it requires understanding of subsurface geology by relying heavily on remotely sensed (i.e. geophysical) data. Cost-effective exploration is essential in order to increase the chance of success using finite budgets. This requires effective decision-making in both the process of selecting the optimum data collection methods and in the process of achieving accuracy during subsequent interpretation. Traditionally, developing the skills, behaviour and practices of exploration decision-making requires many years of experience through working on exploration projects under various geological settings, commodities and levels of available resources. This implies long periods of sub-optimal exploration decision-making, before the necessary experience has been successfully obtained. To address this critical industry issue, our ongoing research focuses on the development of the unique and novel e-learning environment, exSim, which simulates exploration scenarios where users can test their strategies and learn the consequences of their choices. This simulator provides an engaging platform for self-learning and experimentation in exploration decision strategies, providing a means to build experience more effectively. The exSim environment also provides a unique platform on which numerous scenarios and situations (e.g. deposit styles) can be simulated, potentially allowing the user to become virtually familiarised with a broader scope of exploration practices. Harnessing the power of computer simulation, visualisation and an intuitive graphical user interface, the simulator provides a way to assess the user's exploration decisions and subsequent interpretations. In this paper, we present the prototype functionalities in exSim including: simulation of geophysical surveys, follow-up drill testing and interpretation assistive tools.

  4. Biogeophysical feedbacks trigger shifts in the modelled vegetation-atmosphere system at multiple scales

    Directory of Open Access Journals (Sweden)

    S. C. Dekker

    2010-04-01

    Full Text Available Terrestrial vegetation influences climate by modifying the radiative-, momentum-, and hydrologic-balance. This paper contributes to the ongoing debate on the question whether positive biogeophysical feedbacks between vegetation and climate may lead to multiple equilibria in vegetation and climate and consequent abrupt regime shifts. Several modelling studies argue that vegetation-climate feedbacks at local to regional scales could be strong enough to establish multiple states in the climate system. An Earth Model of Intermediate Complexity, PlaSim, is used to investigate the resilience of the climate system to vegetation disturbance at regional to global scales. We hypothesize that by starting with two extreme initialisations of biomass, positive vegetation-climate feedbacks will keep the vegetation-atmosphere system within different attraction domains. Indeed, model integrations starting from different initial biomass distributions diverged to clearly distinct climate-vegetation states in terms of abiotic (precipitation and temperature and biotic (biomass variables. Moreover, we found that between these states there are several other steady states which depend on the scale of perturbation. From here global susceptibility maps were made showing regions of low and high resilience. The model results suggest that mainly the boreal and monsoon regions have low resiliences, i.e. instable biomass equilibria, with positive vegetation-climate feedbacks in which the biomass induced by a perturbation is further enforced. The perturbation did not only influence single vegetation-climate cell interactions but also caused changes in spatial patterns of atmospheric circulation due to neighbouring cells constituting in spatial vegetation-climate feedbacks. Large perturbations could trigger an abrupt shift of the system towards another steady state. Although the model setup used in our simulation is rather simple, our results stress that the coupling of

  5. EXPOSURE ANALYSIS MODELING SYSTEM (EXAMS): USER MANUAL AND SYSTEM DOCUMENTATION

    Science.gov (United States)

    The Exposure Analysis Modeling System, first published in 1982 (EPA-600/3-82-023), provides interactive computer software for formulating aquatic ecosystem models and rapidly evaluating the fate, transport, and exposure concentrations of synthetic organic chemicals - pesticides, ...

  6. MuSim, a graphical user interface for multiple simulation programs

    CERN Document Server

    Roberts, Thomas J; Johnson, Rolland Paul; Neuffer, David Vincent

    2016-01-01

    MuSim is a new user-friendly program designed to interface to many different particle simulation codes, regardless of their data formats or geometry descriptions. It presents the user with a compelling graphical user interface that includes a flexible 3-D view of the simulated world plus powerful editing and drag-and-drop capabilities. All aspects of the design can be parameterized so that parameter scans and optimizations are easy. It is simple to create plots and display events in the 3-D viewer (with a slider to vary the transparency of solids), allowing for an effortless comparison of different simulation codes. Simulation codes: G4beamline 3.02 and MCNP 6.1; more are coming. Many accelerator design tools and beam optics codes were written long ago, with primitive user interfaces by today's standards. MuSim is specifically designed to make it easy to interface to such codes, providing a common user experience for all, and permitting the construction and exploration of models with very little overhead. For...

  7. MuSim, a Graphical User Interface for Multiple Simulation Programs

    Energy Technology Data Exchange (ETDEWEB)

    Roberts, Thomas [MUONS Inc., Batavia; Cummings, Mary Anne [MUONS Inc., Batavia; Johnson, Rolland [MUONS Inc., Batavia; Neuffer, David [Fermilab

    2016-06-01

    MuSim is a new user-friendly program designed to interface to many different particle simulation codes, regardless of their data formats or geometry descriptions. It presents the user with a compelling graphical user interface that includes a flexible 3-D view of the simulated world plus powerful editing and drag-and-drop capabilities. All aspects of the design can be parametrized so that parameter scans and optimizations are easy. It is simple to create plots and display events in the 3-D viewer (with a slider to vary the transparency of solids), allowing for an effortless comparison of different simulation codes. Simulation codes: G4beamline, MAD-X, and MCNP; more coming. Many accelerator design tools and beam optics codes were written long ago, with primitive user interfaces by today's standards. MuSim is specifically designed to make it easy to interface to such codes, providing a common user experience for all, and permitting the construction and exploration of models with very little overhead. For today's technology-driven students, graphical interfaces meet their expectations far better than text-based tools, and education in accelerator physics is one of our primary goals.

  8. Single Sign-On in Cloud Federation using CloudSim

    Directory of Open Access Journals (Sweden)

    Manoj V. Thomas

    2015-05-01

    Full Text Available Single Sign-On (SSO is an authentication mechanism in which a Cloud Service Consumer (CSC needs to be authenticated only once while accessing vari-ous services from multiple service providers, or when accessing multiple services from the same service provid-er. In the case of Cloud Federation, the consumers can get services from various Cloud Service Providers (CSPs who are members of the federation, and SSO can be used to verify the legitimate users without requiring them to get authenticated with each service provider separately. CloudSim is a popular tool used for simulating various cloud computing scenarios. As of now, the simulator lacks effective user authentication and authorization methods with it. In this paper, we discuss the design and implementation of SSO mechanism in the Cloud Federa-tion scenario using the CloudSim toolkit. We have used the Fully Hashed Menezes-Qu-Vanstone (FHMQV pro-tocol for the key exchange and the Symmetric Key En-cryption technique AES-128 for encrypting the identity tokens. We give the workflow model for the proposed approach of SSO in the Cloud Federation and also, the execution time taken in the simulation for various Single Sign-On scenarios where the number of SSO required varies are also shown.

  9. SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedicine.

    Science.gov (United States)

    Wei, Chih-Hsuan; Leaman, Robert; Lu, Zhiyong

    Many text-mining studies have focused on the issue of named entity recognition and normalization, especially in the field of biomedical natural language processing. However, entity recognition is a complicated and difficult task in biomedical text. One particular challenge is to identify and resolve composite named entities, where a single span refers to more than one concept(e.g., BRCA1/2). Most bioconcept recognition and normalization studies have either ignored this issue, used simple ad-hoc rules, or only handled coordination ellipsis, which is only one of the many types of composite mentions studied in this work. No systematic methods for simplifying composite mentions have been previously reported, making a robust approach greatly needed. To this end, we propose a hybrid approach by integrating a machine learning model with a pattern identification strategy to identify the antecedent and conjuncts regions of a concept mention, and then reassemble the composite mention using those identified regions. Our method, which we have named SimConcept, is the first method to systematically handle most types of composite mentions. Our method achieves high performance in identifying and resolving composite mentions for three fundamental biological entities: genes (89.29% in F-measure), diseases (85.52% in F-measure) and chemicals (84.04% in F-measure). Furthermore, our results show that, using our SimConcept method can subsequently help improve the performance of gene and disease concept recognition and normalization.

  10. On the Interpretation of a Possible $\\sim 750$ GeV Particle Decaying into $\\gamma \\gamma$

    CERN Document Server

    Ellis, John; Quevillon, Jérémie; Sanz, Veronica; You, Tevong

    2016-01-01

    We consider interpretations of the recent $\\sim 3 \\sigma$ reports by the CMS and ATLAS collaborations of a possible $X(\\sim 750~{\\rm GeV})$ state decaying into $\\gamma \\gamma$ final states. We focus on the possibilities that this is a scalar or pseudoscalar electroweak isoscalar state produced by gluon-gluon fusion mediated by loops of heavy fermions. We consider several models for these fermions, including a single vector-like charge $2/3$ T quark, a doublet of vector-like quarks $(T, B)$, and a vector-like generation of quarks, with or without leptons that also contribute to the $X \\to \\gamma \\gamma$ decay amplitude. We also consider the possibility that $X(750)$ is a dark matter mediator, with a neutral vector-like dark matter particle. These scenarios are compatible with the present and prospective direct limits on vector-like fermions from LHC Runs 1 and 2, as well as indirect constraints from electroweak precision measurements, and we show that the required Yukawa-like couplings between the $X$ particle...

  11. SIM(1)-VSR Maxwell-Chern-Simons electrodynamics

    Science.gov (United States)

    Bufalo, R.

    2016-06-01

    In this paper we propose a very special relativity (VSR)-inspired generalization of the Maxwell-Chern-Simons (MCS) electrodynamics. This proposal is based upon the construction of a proper study of the SIM (1)-VSR gauge-symmetry. It is shown that the VSR nonlocal effects present a significant and healthy departure from the usual MCS theory. The classical dynamics is analysed in full detail, by studying the solution for the electric field and static energy for this configuration. Afterwards, the interaction energy between opposite charges is derived and we show that the VSR effects play an important part in obtaining a (novel) finite expression for the static potential.

  12. SIM$(1)$--VSR Maxwell-Chern-Simons electrodynamics

    CERN Document Server

    Bufalo, R

    2016-01-01

    In this paper we propose a very special relativity (VSR)-inspired generalization of the Maxwell-Chern-Simons (MCS) electrodynamics. This proposal is based upon the construction of a proper study of the SIM$(1)$--VSR gauge-symmetry. It is shown that the VSR nonlocal effects present a significant and health departure from the usual MCS theory. The classical dynamics is analysed in full detail, by studying the solution for the electric field and static energy for this configuration. Afterwards, the interaction energy between opposite charges are derived and we show that the VSR effects play an important part in obtaining a (novel) finite expression for the static potential.

  13. Design strategies for human & earth systems modeling to meet emerging multi-scale decision support needs

    Science.gov (United States)

    Spak, S.; Pooley, M.

    2012-12-01

    The next generation of coupled human and earth systems models promises immense potential and grand challenges as they transition toward new roles as core tools for defining and living within planetary boundaries. New frontiers in community model development include not only computational, organizational, and geophysical process questions, but also the twin objectives of more meaningfully integrating the human dimension and extending applicability to informing policy decisions on a range of new and interconnected issues. We approach these challenges by posing key policy questions that require more comprehensive coupled human and geophysical models, identify necessary model and organizational processes and outputs, and work backwards to determine design criteria in response to these needs. We find that modular community earth system model design must: * seamlessly scale in space (global to urban) and time (nowcasting to paleo-studies) and fully coupled on all component systems * automatically differentiate to provide complete coupled forward and adjoint models for sensitivity studies, optimization applications, and 4DVAR assimilation across Earth and human observing systems * incorporate diagnostic tools to quantify uncertainty in couplings, and in how human activity affects them * integrate accessible community development and application with JIT-compilation, cloud computing, game-oriented interfaces, and crowd-sourced problem-solving We outline accessible near-term objectives toward these goals, and describe attempts to incorporate these design objectives in recent pilot activities using atmosphere-land-ocean-biosphere-human models (WRF-Chem, IBIS, UrbanSim) at urban and regional scales for policy applications in climate, energy, and air quality.

  14. CS-DRM: A Cloud-Based SIM DRM Scheme for Mobile Internet

    Directory of Open Access Journals (Sweden)

    Liu Zhang

    2011-01-01

    Full Text Available With the rapid development and growth of the mobile industry, a considerable amount of mobile applications and services are available, which involve Internet scale data collections. Meanwhile, it has a tremendous impact on digital content providers as well as the mobile industry that a large number of digital content have been pirated and illegally distributed. Digital Rights Management (DRM aims at protecting digital contents from being abused through regulating their usage. Unfortunately, to the best of our knowledge, fewer of these DRM schemes are concerned with the cost of the servers in a DRM system when the number of users scales up, and consider benefits of content providers who can be seen as tenants of a content server. In this paper, we propose CS-DRM, a cloud-based SIM DRM scheme, for the mobile Internet. The SIM card is introduced into CS-DRM to both reduce the cost and provide higher security. Also, the characteristics of cloud computing enable CS-DRM to bring benefits for content providers, and well satisfy the performance requirements with low cost when the number of users increases significantly. Furthermore, we have implemented a prototype of our DRM scheme, which demonstrates that CS-DRM is efficient, secure, and practicable.

  15. xLPR Sim Editor 1.0 User's Guide

    Energy Technology Data Exchange (ETDEWEB)

    Mariner, Paul

    2017-03-01

    The United States Nuclear Regulatory Commission in cooperation with the Electric Power Research Institute contracted Sandia National Laboratories to develop the framework of a probabilistic fracture mechanics assessment code called xLPR ( Extremely Low Probability of Rupture) Version 2.0 . The purpose of xLPR is to evaluate degradation mechanisms in piping systems at nuclear power plants and to predict the probability of rupture. This report is a user's guide for xLPR Sim Editor 1.0 , a graphical user interface for creating and editing the xLPR Version 2.0 input file and for creating, editing, and using the xLPR Version 2.0 database files . The xLPR Sim Editor, provides a user - friendly way for users to change simulation options and input values, s elect input datasets from xLPR data bases, identify inputs needed for a simulation, and create and modify an input file for xLPR.

  16. Pǎun's systems as models of economic systems

    Institute of Scientific and Technical Information of China (English)

    Waldemar Korczynski

    2007-01-01

    In the paper a concept for modeling the economic systems by the formalism of Pǎun's systems is proposed. The main idea is to represent economic systems as homomorphic images of Petri nets corresponding to the (super) cells of Pǎun's systems.

  17. SIMS three year study on statistics and environmental factors in health. Technical progress report No. 1. [Hazards of air pollution

    Energy Technology Data Exchange (ETDEWEB)

    None

    1976-12-01

    Progress is reported for the activities of the Siam Institute for mathematics and society (SIMS), Columbia University, and Stanford University. The SIMS report is concerned with the use of animal experiments in establishing tolerance limits for human exposure to environmental toxicants; valid assessment of the health consequences of occupational and other specialized toxic exposures; mathematical theories for the kinetics of carcinogenesis; data coding, storage, access, and analysis, relationship between air pollution and respiratory diseases; and air pollution assessment. The Columbia University report is concerned with development of statistical methods and models for describing the effects of the environment, measured by pollution and weather variables, on respiratory diseases. The Stanford University report is concerned with spatial distribution of air pollutants, relation of pollutant concentrations to morbidity and mortality statistics, and other topics. (HLW)

  18. Impact of the first-forbidden $\\beta$ decay on the production of $A \\sim 195$ r-process peak

    CERN Document Server

    Nishimura, Nobuya; Fang, Dong-Liang; Suzuki, Toshio

    2016-01-01

    We investigated the effects of first-forbidden transitions in $\\beta$ decays on the production of the r-process $A \\sim 195$ peak. The theoretical calculated $\\beta$-decay rates with $\\beta$-delayed neutron emission were examined using several astrophysical conditions. As the first-borbidden decay is dominant in $N \\sim 126$ neutron-rich nuclei, their inclusion shortens $\\beta$-decay lifetimes and shifts the abundance peak towards higher masses. Additionally, the inclusion of the $\\beta$-delayed neutron emission results in a wider abundance peak, and smoothens the mass distribution by removing the odd-even mass staggering. The effects are commonly seen in the results of all adopted astrophysical models. Nevertheless there are quantitative differences, indicating that remaining uncertainty in the determination of half-lives for $N=126$ nuclei is still significant in order to determine the production of the r-process peak.

  19. Report on the ASCR Workshop on Modeling and Simulation of Exascale Systems and Applications

    Energy Technology Data Exchange (ETDEWEB)

    Barker, Kevin [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Belak, Jim [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Carothers, Chris [Rensselaer Polytechnic Inst., Troy, NY (United States); Norris, Boyana [Argonne National Lab. (ANL), Argonne, IL (United States); Yalamanshili, Sudhakar [Georgia Inst. of Technology, Atlanta, GA (United States)

    2012-08-31

    In the last few years, numerous studies commissioned by the Department of Energy (DOE), the Defense Advanced Research Projects Agency (DARPA), and others have examined the challenges that will have to be overcome for computational science to achieve exascale, a two order-of-magnitude increase in capability beyond what is possible today. Exponential growth in the number of devices (Moore’s Law) is expected to continue unabated, but the end of Dennard scaling, and hence the growth in performance of individual processors, has led to exponential growth in concurrency. Power consumption has also grown to the point where the cost of the electrical power for systems threatens to exceed the cost of acquiring them. Ever-shrinking devices, and the growth in their number, are expected to increase the rate of soft, or transient, errors such that applications will no longer be able to assume correct behavior of the underlying machine. Adapting to such systems will require new mathematical algorithms that minimize synchronization and data movement, and a new generation of scientific software. Rather than addressing these issues in isolation, a new process of “Co-Design” is being pursued in which application and computer scientists work toward the common goal of an exascale ecosystem of systems and applications. Modeling and simulation (ModSim) is a critical part of this process. It enables scientists and engineers to analyze future algorithms, applications, and computing systems, long before they are realized, and make the necessary design decisions such that exascale science is broadly achieved. Later, when exascale applications and systems are realized, ModSim technology will enable us to understand their behavior, debugging and optimizing them. Given the increasing importance of modeling and simulation, a workshop was organized by DOE/ASCR to assess the current state of the art and to identify research challenges that must be overcome in this field. Fifty experts

  20. Modeling Control Situations in Power System Operations

    DEFF Research Database (Denmark)

    Saleem, Arshad; Lind, Morten; Singh, Sri Niwas

    2010-01-01

    Increased interconnection and loading of the power system along with deregulation has brought new challenges for electric power system operation, control and automation. Traditional power system models used in intelligent operation and control are highly dependent on the task purpose. Thus, a model...... for intelligent operation and control must represent system features, so that information from measurements can be related to possible system states and to control actions. These general modeling requirements are well understood, but it is, in general, difficult to translate them into a model because of the lack...... of explicit principles for model construction. This paper presents a work on using explicit means-ends model based reasoning about complex control situations which results in maintaining consistent perspectives and selecting appropriate control action for goal driven agents. An example of power system...