WorldWideScience

Sample records for model three-dimensional artery

  1. Turbulence modeling in three-dimensional stenosed arterial bifurcations.

    Science.gov (United States)

    Banks, J; Bressloff, N W

    2007-02-01

    Under normal healthy conditions, blood flow in the carotid artery bifurcation is laminar. However, in the presence of a stenosis, the flow can become turbulent at the higher Reynolds numbers during systole. There is growing consensus that the transitional k-omega model is the best suited Reynolds averaged turbulence model for such flows. Further confirmation of this opinion is presented here by a comparison with the RNG k-epsilon model for the flow through a straight, nonbifurcating tube. Unlike similar validation studies elsewhere, no assumptions are made about the inlet profile since the full length of the experimental tube is simulated. Additionally, variations in the inflow turbulence quantities are shown to have no noticeable affect on downstream turbulence intensity, turbulent viscosity, or velocity in the k-epsilon model, whereas the velocity profiles in the transitional k-omega model show some differences due to large variations in the downstream turbulence quantities. Following this validation study, the transitional k-omega model is applied in a three-dimensional parametrically defined computer model of the carotid artery bifurcation in which the sinus bulb is manipulated to produce mild, moderate, and severe stenosis. The parametric geometry definition facilitates a powerful means for investigating the effect of local shape variation while keeping the global shape fixed. While turbulence levels are generally low in all cases considered, the mild stenosis model produces higher levels of turbulent viscosity and this is linked to relatively high values of turbulent kinetic energy and low values of the specific dissipation rate. The severe stenosis model displays stronger recirculation in the flow field with higher values of vorticity, helicity, and negative wall shear stress. The mild and moderate stenosis configurations produce similar lower levels of vorticity and helicity.

  2. [Study on the methods for establishing virtual three-dimensional models of cerebral arteries with the three-dimensional moulding software].

    Science.gov (United States)

    Wei, Xin; Xie, Xiaodong; Wang, Chaohua

    2007-12-01

    This study was conducted to establish the methods of virtual three-dimensional cerebral arteries models by use of three-dimensional moulding software. The virtual models of the cerebral arteries were established using the three-dimensional moulding software of 3D Studio MAX R3 with 46 cases of normal cerebral DSA image as the original. The results showed there was similarity in appearance between the virtual cerebral arteries and DSA image. This is of benefit to understanding the vascular three-dimensional spatial relation in visual sense. Several models of different variant anatomy could be easily established on the copy files of the virtual cerebral arteries model. The virtual model could help learners to create and increase the three-dimensional space concept of arteries and aneurysms in clinical teaching. The results indicated that the virtual three-dimensional cerebral arteries models could display the three-dimensional spatial relation of the cerebral arterial system distinctly, and could serve as a morphologic foundation in the researches on vascular disease.

  3. A NEW UNSTEADY THREE DIMENSIONAL MODEL FOR MACROMOLECULAR TRANSPORT AND WATER FILTRATION ACROSS THE ARTERIAL WALL

    Institute of Scientific and Technical Information of China (English)

    黄浩; 温功碧

    2001-01-01

    A new unsteady three-dimensional convective-diffusive mathematical model for the transportation of macromolecules and water across the arterial wall was proposed . After the formation of leaky junctions due to the mitosis of endothelial cell of the arterial wall, the macromolecular transport happens surrounding the leaky cells. The arterial wall was divided into four layers: the endothelial layer, the subendothelial intima, the internal elastic lamina and the media for the convenience of research. The time-dependent concentration growth,the effect of the shape of endothelial cell and the effect of physiological parameters were analyzed. The analytical solution of velocity field and pressure field of water flow across the arterial wall were obtained; and concentration distribution of three macromolecules ; LDL,HRP and Albumin, were calculated with numerical simulation method. The new theory predicts, the maximum and distribution areas of time dependent concentration with round shape endothelial cell are both larger than that with ellipse-shape endothelial cell. The model also predicts the concentration growth is much alike that of a two-dimensional model and it shows that the concentration reaches its peak at the leaky junction where atherosclerotic formation frequently occurs and falls down rapidly in a limited area beginning from its earlier time growth to the state when macromolecular transfer approaches steadily. These predictions of the new model are in agreement with the experimental observation for the growth and concentration distribution of LDL and Albumin.

  4. Three-dimensional modeling of flow and deformation in idealized mild and moderate arterial vessels.

    Science.gov (United States)

    Gu, Xi; Yeoh, Guan Heng; Timchenko, Victoria

    2016-10-01

    Three-dimensional numerical calculations of mild and moderate stenosed blood vessels have been performed. Large eddy simulation through a dynamic subgrid scale Smagorinsky model is applied to model the transitional and turbulent pulsatile flow. For the compliant stenosed model, fluid-structure interaction is realized through a two-way coupling between the fluid flow and the deforming vessel through the change in the external diameter due to the increment of circumferential pressure via a novel moving boundary approach. Model predictions compare very well against measured and numerical data for the centerline velocities, thickness of the flow separation zones and radial wall displacements.

  5. Multi-scale computational model of three-dimensional hemodynamics within a deformable full-body arterial network

    Energy Technology Data Exchange (ETDEWEB)

    Xiao, Nan [Department of Bioengineering, Stanford University, Stanford, CA 94305 (United States); Department of Biomedical Engineering, King’s College London, London SE1 7EH (United Kingdom); Humphrey, Jay D. [Department of Biomedical Engineering, Yale University, New Haven, CT 06520 (United States); Figueroa, C. Alberto, E-mail: alberto.figueroa@kcl.ac.uk [Department of Biomedical Engineering, King’s College London, London SE1 7EH (United Kingdom)

    2013-07-01

    In this article, we present a computational multi-scale model of fully three-dimensional and unsteady hemodynamics within the primary large arteries in the human. Computed tomography image data from two different patients were used to reconstruct a nearly complete network of the major arteries from head to foot. A linearized coupled-momentum method for fluid–structure-interaction was used to describe vessel wall deformability and a multi-domain method for outflow boundary condition specification was used to account for the distal circulation. We demonstrated that physiologically realistic results can be obtained from the model by comparing simulated quantities such as regional blood flow, pressure and flow waveforms, and pulse wave velocities to known values in the literature. We also simulated the impact of age-related arterial stiffening on wave propagation phenomena by progressively increasing the stiffness of the central arteries and found that the predicted effects on pressure amplification and pulse wave velocity are in agreement with findings in the clinical literature. This work demonstrates the feasibility of three-dimensional techniques for simulating hemodynamics in a full-body compliant arterial network.

  6. Modelling the layer-specific three-dimensional residual stresses in arteries, with an application to the human aorta.

    Science.gov (United States)

    Holzapfel, Gerhard A; Ogden, Ray W

    2010-05-01

    This paper provides the first analysis of the three-dimensional state of residual stress and stretch in an artery wall consisting of three layers (intima, media and adventitia), modelled as a circular cylindrical tube. The analysis is based on experimental results on human aortas with non-atherosclerotic intimal thickening documented in a recent paper by Holzapfel et al. (Holzapfel et al. 2007 Ann. Biomed. Eng. 35, 530-545 (doi:10.1007/s10439-006-9252-z)). The intima is included in the analysis because it has significant thickness and load-bearing capacity, unlike in a young, healthy human aorta. The mathematical model takes account of bending and stretching in both the circumferential and axial directions in each layer of the wall. Previous analysis of residual stress was essentially based on a simple application of the opening-angle method, which cannot accommodate the three-dimensional residual stretch and stress states observed in experiments. The geometry and nonlinear kinematics of the intima, media and adventitia are derived and the associated stress components determined explicitly using the nonlinear theory of elasticity. The theoretical results are then combined with the mean numerical values of the geometrical parameters and material constants from the experiments to illustrate the three-dimensional distributions of the stretches and stresses throughout the wall. The results highlight the compressive nature of the circumferential stress in the intima, which may be associated with buckling of the intima and its delamination from the media, and show that the qualitative features of the stretch and stress distributions in the media and adventitia are unaffected by the presence or absence of the intima. The circumferential residual stress in the intima increases significantly as the associated residual deformation in the intima increases while the corresponding stress in the media (which is compressive at its inner boundary and tensile at its outer boundary

  7. Numerical Study of Cerebroarterial Hemodynamic Changes Following Carotid Artery Operation: A Comparison Between Multiscale Modeling and Stand-Alone Three-Dimensional Modeling.

    Science.gov (United States)

    Liang, Fuyou; Oshima, Marie; Huang, Huaxiong; Liu, Hao; Takagi, Shu

    2015-10-01

    Free outflow boundary conditions have been widely adopted in hemodynamic model studies, they, however, intrinsically lack the ability to account for the regulatory mechanisms of systemic hemodynamics and hence carry a risk of producing incorrect results when applied to vascular segments with multiple outlets. In the present study, we developed a multiscale model capable of incorporating global cardiovascular properties into the simulation of blood flows in local vascular segments. The multiscale model was constructed by coupling a three-dimensional (3D) model of local arterial segments with a zero-one-dimensional (0-1-D) model of the cardiovascular system. Numerical validation based on an idealized model demonstrated the ability of the multiscale model to preserve reasonable pressure/flow wave transmission among different models. The multiscale model was further calibrated with clinical data to simulate cerebroarterial hemodynamics in a patient undergoing carotid artery operation. The results showed pronounced hemodynamic changes in the cerebral circulation following the operation. Additional numerical experiments revealed that a stand-alone 3D model with free outflow conditions failed to reproduce the results obtained by the multiscale model. These results demonstrated the potential advantage of multiscale modeling over single-scale modeling in patient-specific hemodynamic studies. Due to the fact that the present study was limited to a single patient, studies on more patients would be required to further confirm the findings.

  8. Three-Dimensional Ocean Noise Modeling

    Science.gov (United States)

    2015-03-01

    particular attention paid to the case of Gaussian canyon . The solution to the three-dimensional wave equation in Cartesian co-ordinates can be written...in terms of a modal decomposition, carried out in the vertical and across- canyon horizontal directions. Work Completed 1. Nx2D and 3D Noise PE...azimuth in the Hudson Canyon [Figure 2). Additionally, the PE-reciprocity noise model was used to estimate the size, speed and distance from the

  9. Three Dimensional Hydrodynamic Model With Multiquadtree Meshes

    Directory of Open Access Journals (Sweden)

    G. P. Vanegas

    2008-01-01

    Full Text Available This study presents a three dimensional model for the transport of conservative contaminants, which can be used for bodies of water which are affected by winds and/or tides. The model solves the equation of mass transport, based on results obtained using a hydrodynamic model for shallow waters that works in a finite volume scheme and a type of hierarchical grid, called multi-quadtree, which is adaptable to the bathymetry. To solve the vertical coordinates, the coordinate z is transformed into a sigma (σ coordinate, thus allowing the same number of layers in the vertical, regardless of depth. This hydrodynamic model is validated using two cases: a long wave propagated in a channel of variable width and bottom and wind action in a rectangular basin. Finally, the results obtained are presented for a hypothetical single port outfall in the bay of Campeche, México. The model developed here is both quick and easy to use and is efficient when compared with models presented by other authors since it uses adaptable grids which allow detailed solutions to be obtained for areas of interest such as coastlines and the area around an outfall.

  10. Effects of the three-dimensional residual stresses on the mechanical properties of arterial walls.

    Science.gov (United States)

    Zheng, Xianbing; Ren, Jiusheng

    2016-03-21

    Effects of the three-dimensional residual stresses on the mechanical properties of arterial walls are analyzed in this paper, based on the model which considered the bending and stretching both in the circumferential and axial directions of the three distinct arterial layers. Moreover, different constitutive models are proposed to quantify the nonlinear mechanics of the three distinct layers and the important constituents, i.e. elastin, collagen fibers and smooth muscle cells (SMCs), are all taken into account. The stress distributions and pressure-radius curves of the arterial wall are given in details. Results demonstrate that the maximum values of the circumferential stress and the corresponding stress gradient in the media under the mean arterial pressure are reduced significantly as a consequence of the SMCs. The bending in the axial direction of the media and the opening angle of the intima have an obvious impact on the mechanical behaviors of arterial walls. This study may not only develop the understanding of effects of the three-dimensional residual stresses on the arterial wall response, but also can increase the accuracy of the analyses for patient-specific studies used for the treatments of arterial diseases. Copyright © 2016 Elsevier Ltd. All rights reserved.

  11. Three-dimensional modeling of oxidized-LDL accumulation and HDL mass transport in a coronary artery: a proof-of-concept study for predicting the region of atherosclerotic plaque development.

    Science.gov (United States)

    Sakellarios, Antonis I; Siogkas, Panagiotis K; Athanasiou, Lambros S; Exarchos, Themis P; Papafaklis, Michail I; Bourantas, Christos V; Naka, Katerina K; Michalis, Lampros K; Filipovic, Nenad; Parodi, Oberdan; Fotiadis, Dimitrios I

    2013-01-01

    Low density lipoprotein (LDL) has a significant role on the atherosclerotic plaque development, while the concentration of high density lipoproteins (HDL) is considered to play an atheroprotective role according to several biochemical mechanisms. In this work, it is the first time that both LDL and HDL concentrations are taken into account in order to predict the regions prone for plaque development. Our modeling approach is based on the use of a realistic three-dimensional reconstructed pig coronary artery in two time points. Biochemical data measured in the pig were also included in order to develop a more customized model. We modeled coronary blood flow by solving the Navier-Stokes equations in the arterial lumen and plasma filtration in the arterial wall using Darcy's Law. HDL transport was modeled only in the arterial lumen using the convection-diffusion equation, while LDL transport was modeled both in the lumen and the arterial wall. An additional novelty of this work is that we model the oxidation of LDL taking into account the atheroprotective role of HDL. The results of our model were in good agreement with histological findings demonstrating that increased oxidized LDL is found near regions of advanced plaques, while non-oxidized LDL is found in regions of early plaque types.

  12. Three dimensional modeling of CR propagation

    CERN Document Server

    Gaggero, Daniele; Di Bernardo, Giuseppe; Evoli, Carmelo; Grasso, Dario

    2013-01-01

    We present here a major upgrade of DRAGON, a numerical package that computes the propagation of a wide set of CR species from both astrophysical and exotic origin in the Galaxy in a wide energy range from tens of MeV to tens of TeV. DRAGON takes into account all relevant processes in particular diffusion, convection, reacceleration, fragmentation and energy losses. For the first time, we present a full 3D version of DRAGON with anisotropic position-dependent diffusion. In this version, the propagation is calculated within a 3D cartesian grid and the user is able to implement realistic and structured three dimensional source, gas and regular magnetic field distributions. Moreover, it is possible to specify an arbitrary function of position and rigidity for the diffusion coefficients in the parallel and perpendicular direction to the regular magnetic field of the Galaxy. The code opens many new possibilities in the study of CR physics. In particular, we can study for the first time the impact of the spiral arm ...

  13. Synthetic Spectrum Methods for Three-Dimensional Supernova Models

    CERN Document Server

    Thomas, R C

    2003-01-01

    Current observations stimulate the production of fully three-dimensional explosion models, which in turn motivates three-dimensional spectrum synthesis for supernova atmospheres. We briefly discuss techniques adapted to address the latter problem, and consider some fundamentals of line formation in supernovae without recourse to spherical symmetry. Direct and detailed extensions of the technique are discussed, and future work is outlined.

  14. DEVELOPMENT OF A HYBRID MODEL FOR THREE-DIMENSIONAL GIS

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    This paper presents a hybrid model for three-dimensional Geographical Information Systems which is an integration of surface- and volume-based models. The Triangulat ed Irregular Network (TIN) and octree models are integrated in this hybrid model. The TIN model works as a surface-based model which mainly serves for surface presentation and visualization. On the other hand, the octree encoding supports volumetric analysis. The designed data structure brings a major advantage in the three-dimensional selective retrieval. This technique increases the efficiency of three-dimensional data operation.

  15. THREE DIMENSIONAL DATA STRUCTURE AND DATA MODEL

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    3D GISs were developed simultaneously in the late 1980s in a number of different disciplines.The development of these 3D GISs can not yet meet all needs for new representations and analytical tools in 3D envir onments.In this paper,the data structures,especially solid-based data representa tions are introduced.Then,a typical object-oriented data model is put forth to show a new data model.And at last,two data access methods are proposed to make the data model clear.

  16. Three-dimensional model analysis and processing

    CERN Document Server

    Yu, Faxin; Luo, Hao; Wang, Pinghui

    2011-01-01

    This book focuses on five hot research directions in 3D model analysis and processing in computer science:  compression, feature extraction, content-based retrieval, irreversible watermarking and reversible watermarking.

  17. Three-dimensional modeling of piezoelectric materials.

    Science.gov (United States)

    Brissaud, Michel

    2010-09-01

    This paper deals with 3-D modeling of piezoelectric materials. The model is based on an exact description of the potential and electric field inside a material. Moreover, coherent piezoelectric equations are used. Modeling has been applied to rectangular and cylindrical elements. In each case, the exact equations of the displacements along the three coordinate axes and the corresponding electric impedance are calculated. The general resonance conditions are stated for these two geometries. It is shown that, contrary to the 1-D models, a unique equation describes lateral and thickness vibrations, or radial and thickness vibrations. These properties enable us to analytically calculate the frequency spectrum of rectangular elements, thick disks, or cylinders and also thick rings or hollow cylinders versus the width to thickness ratio. It is then very easy to determine the corresponding dispersion diagram related to each geometry sample. These resonance conditions are similar to those deduced from the 1-D model described in the IEEE standard but are more general and necessitate no cancelling out assumptions. In addition, contrary to 1-D models, the wave velocities and the permittivity are independent of the element geometry (parallelepiped or cylindrical). The wave velocities are equal to those stated for the wave propagation in infinite medium and measured with pulse-echo techniques. It is the coupling inside the material which modifies the resonance conditions and not the geometrical dimensions of the vibrating element. 3-D modeling and 1-D radial mode of the admittance of a thick disk are calculated and compared with experimental measurements. Theoretical and measured admittances are compared and discussed.

  18. Three-dimensional model for fusion processes

    Energy Technology Data Exchange (ETDEWEB)

    Olson, A.P.

    1984-01-01

    Active galactic nuclei (AGN) emit unusual spectra of radiation which is interpreted to signify extreme distance, extreme power, or both. The status of AGNs was recently reviewed by Balick and Heckman. It seems that the greatest conceptual difficulty with understanding AGNs is how to form a coherent phenomenological model of their properties. What drives the galactic engine. What and where are the mass-flows of fuel to this engine. Are there more than one engine. Do the engines have any symmetry properties. Is observed radiation isotropically emitted from the source. If it is polarized, what causes the polarization. Why is there a roughly spherical cloud of ionized gas about the center of our own galaxy, the Milky Way. The purpose of this paper is to discuss a new model, based on fusion processes which are not axisymmetric, uniform, isotropic, or even time-invariant. Then, the relationship to these questions will be developed. A unified model of fusion processes applicable to many astronomical phenomena will be proposed and discussed.

  19. Standalone visualization tool for three-dimensional DRAGON geometrical models

    Energy Technology Data Exchange (ETDEWEB)

    Lukomski, A.; McIntee, B.; Moule, D.; Nichita, E. [Faculty of Energy Systems and Nuclear Science, Univ. of Ontario Inst. of Tech., Oshawa, Ontario (Canada)

    2008-07-01

    DRAGON is a neutron transport and depletion code able to solve one-, two- and three-dimensional problems. To date DRAGON provides two visualization modules, able to represent respectively two- and three-dimensional geometries. The two-dimensional visualization module generates a postscript file, while the three dimensional visualization module generates a MATLAB M-file with instructions for drawing the tracks in the DRAGON TRACKING data structure, which implicitly provide a representation of the geometry. The current work introduces a new, standalone, tool based on the open-source Visualization Toolkit (VTK) software package which allows the visualization of three-dimensional geometrical models by reading the DRAGON GEOMETRY data structure and generating an axonometric image which can be manipulated interactively by the user. (author)

  20. THREE-DIMENSIONAL ULTRASOUND AND STENOSIS OF INTERNAL CAROTID ARTERY

    Directory of Open Access Journals (Sweden)

    Vojko Flis

    2003-12-01

    Full Text Available Background. Elucidation of the ultrasound structure of the atherosclerotic plaque in stenosis of internal carotid artery may have important implications for carotid surgery. This study compares the ability of computer derived 3D ultrasound gray scale volumetric measurements to diferentiate between ultrasonic structure of symptomatic and asymptomatic carotid plaque causing more than 70% stenosis.Methods. Eightysix internal carotid artery stenoses (70–99%, 45 symptomatic, 41 asymptomatic were imaged with 3D ultrasound to obtain the whole volume of the atherosclerotic plaque. Digitalized sonograms were computerized and normalized to the gray scale median (GSM of blood (0 and vessel adventitia (200. Plaque GSM was obtained for the whole volume by computing the volume ratio between echolucent and echogenic areas. The plaque heterogeneity was obtained by computing the density of echogenic areas per volume unit. Parametric t test was used for statistic analysis.Results. Minimum volume GSM ratio (determining echolucency was higher for asymptomatic plaque (0.6 – CI 0.48– 0.91 versus 0.3 – CI 0.21–0.75: p = 0.002. Greater GSM heterogeneity was present in symptomatic plaque (6.8 – CI 2.5– 18.3 versus 0.41 – CI 0.2–3.4;.p = 0.0001.Conclusions. Volume ultrasound imaging that enables objective assessment of whole ultrasonic plaque structure is more sensitive that single longitudinal view sonography for differentiating between ultrasonic structure of symptomatic and asymptomatic plaque.

  1. THE THREE DIMENSIONAL MODELS AND THEIR IDENTIFICATION MINING SUBSIDENCE

    Institute of Scientific and Technical Information of China (English)

    WUGe; SHENGuanghan; JIXiaoming; WANGQuanke

    1995-01-01

    The theory and method for selecting the three dimensional prediction models of mining subsidence are studied in this paper. Namely, based on system identification and statistics theory, an optimum mining subsidence prediction model can be selected. The method proved by a typical case has a good prospect for determining the physical model of rock mass for mining subsidence prediction.

  2. Three dimensional geometric modeling of processing-tomatoes

    Science.gov (United States)

    Characterizing tomato geometries with different shapes and sizes would facilitate the design of tomato processing equipments and promote computer-based engineering simulations. This research sought to develop a three-dimensional geometric model that can describe the morphological attributes of proce...

  3. Thermodynamics of a Simple Three-Dimensional DNA Hairpin Model

    CERN Document Server

    Kremer, Kellan; Boggess, Erin; Mask, Walker; Saucedo, Tony; Hansen, JJ; Appelgate, Ian; Jurgensen, Taylor; Santos, Aaron

    2016-01-01

    We characterize the equation of state for a simple three-dimensional DNA hairpin model using a Metropolis Monte Carlo algorithm. This algorithm was run at constant temperature and fixed separation between the terminal ends of the strand. From the equation of state, we compute the compressibility, thermal expansion coefficient, and specific heat along with adiabatic path.

  4. Three dimensional rigorous model for optical scattering problems

    NARCIS (Netherlands)

    Wei, X.

    2006-01-01

    We present a three-dimensional model based on the finite element method for solving the time-harmonic Maxwell equation in optics. It applies to isotropic or anisotropic dielectrics and metals, and to many configurations such as an isolated scatterer in a multilayer, bi-gratings and crystals. We shal

  5. Three-dimensional conceptual model for service-oriented simulation

    Institute of Scientific and Technical Information of China (English)

    Wen-guang WANG; Wei-ping WANG; Justyna ZANDER; Yi-fan ZHU

    2009-01-01

    In this letter, we propose a novel three-dimensional conceptual model for an emerging service-oriented simulation paradigm. The model can be used as a guideline or an analytic means to find the potential and possible future directions of the current simulation frameworks, In particular, the model inspects the crossover between the disciplines of modeling and simulation,service-orientation, and software/systems engineering. Finally, two specific simulation frameworks are studied as examples.

  6. Three-dimensional conceptual model for service-oriented simulation

    CERN Document Server

    Wang, Wenguang; Zander, Justyna; Zhu, Yifan; 10.1631/jzus.A0920258

    2009-01-01

    In this letter, we propose a novel three-dimensional conceptual model for an emerging service-oriented simulation paradigm. The model can be used as a guideline or an analytic means to find the potential and possible future directions of the current simulation frameworks. In particular, the model inspects the crossover between the disciplines of modeling and simulation, service-orientation, and software/systems engineering. Finally, two specific simulation frameworks are studied as examples.

  7. Three dimensional modelling of ICRF launchers for fusion devices

    Science.gov (United States)

    Carter, M. D.; Rasmussen, D. A.; Ryan, P. M.; Hanson, G. R.; Stallings, D. C.; Batchelor, D. B.; Bigelow, T. S.; England, A. C.; Hoffman, D. J.; Murakami, M.; Wang, C. Y.; Wilgen, J. B.; Rogers, J. H.; Wilson, J. R.; Majeski, R.; Schilling, G.

    1996-02-01

    The three dimensional (3-D) nature of antennas for fusion applications in the ion cyclotron range of frequencies (ICRF) requires accurate modelling to design and analyse new antennas. In this article, analysis and design tools for radiofrequency (RF) antennas are successfully benchmarked with experiment, and the 3-D physics of the launched waves is explored. The systematic analysis combines measured density profiles from a reflectometer system, transmission line circuit modelling, detailed 3-D magnetostatics modelling and a new 3-D electromagnetic antenna model including plasma. This analysis gives very good agreement with measured loading data from the Tokamak Fusion Test Reactor (TFTR) Bay-M antenna, thus demonstrating the validity of the analysis for the design of new RF antennas. The 3-D modelling is contrasted with 2-D models, and significant deficiencies are found in the latter. The 2-D models are in error by as much as a factor of 2 in real and reactive loading, even after they are corrected for the most obvious 3-D effects. Three dimensional effects play the most significant role at low parallel wavenumbers, where the launched power spectrum can be quite different from the predictions of 2-D models. Three dimensional effects should not be ignored for many RF designs, especially those intended for fast wave current drive

  8. Three-dimensional radiation transfer modeling in a dicotyledon leaf

    Science.gov (United States)

    Govaerts, Yves M.; Jacquemoud, Stéphane; Verstraete, Michel M.; Ustin, Susan L.

    1996-11-01

    The propagation of light in a typical dicotyledon leaf is investigated with a new Monte Carlo ray-tracing model. The three-dimensional internal cellular structure of the various leaf tissues, including the epidermis, the palisade parenchyma, and the spongy mesophyll, is explicitly described. Cells of different tissues are assigned appropriate morphologies and contain realistic amounts of water and chlorophyll. Each cell constituent is characterized by an index of refraction and an absorption coefficient. The objective of this study is to investigate how the internal three-dimensional structure of the tissues and the optical properties of cell constituents control the reflectance and transmittance of the leaf. Model results compare favorably with laboratory observations. The influence of the roughness of the epidermis on the reflection and absorption of light is investigated, and simulation results confirm that convex cells in the epidermis focus light on the palisade parenchyma and increase the absorption of radiation.

  9. Complete wetting in the three-dimensional transverse Ising model

    OpenAIRE

    Harris, A B; Micheletti, C.; Yeomans, J. M.

    1996-01-01

    We consider a three-dimensional Ising model in a transverse magnetic field, $h$ and a bulk field $H$. An interface is introduced by an appropriate choice of boundary conditions. At the point $(H=0,h=0)$ spin configurations corresponding to different positions of the interface are degenerate. By studying the phase diagram near this multiphase point using quantum-mechanical perturbation theory we show that that quantum fluctuations, controlled by $h$, split the multiphase degeneracy giving rise...

  10. Reduction in incomplete stent apposition area caused by jailed struts after single stenting at left main bifurcation lesions: micro-CT analysis using a three-dimensional elastic bifurcated coronary artery model.

    Science.gov (United States)

    Hikichi, Yutaka; Umezu, Mitsuo; Node, Koichi; Iwasaki, Kiyotaka

    2017-01-01

    Stent struts protruding into ostial side branch called "jailed strut" at bifurcation lesions is a likely cause of thrombus formation. We aimed to investigate the influences of multiple kissing balloon inflation (KBI) for stent expansion, and stent platform design, respectively, on the reduction of incomplete stent apposition area (ISA area) caused by jailed struts at a side-branch ostium, using a three-dimensional elastic left main (LM) bifurcated coronary artery model. The referenced LM bifurcation angle data of 209 patients were stratified by tertiles focusing on the angle between the LM trunk (LMT) and left anterior descending artery (LAD). A bifurcation model was fabricated with angles of 129°, 122.2°, and 76.4° for LMT-LAD, LMT-left circumflex (LCx), and LAD-LCx, respectively, and with diameters of 5, 3.75, and 3.5 mm for LMT, LAD, and LCx, respectively; these diameters fulfill Murray's law. A 75 % stenosis was included along the LMT. One-time and three-time KBIs were conducted using two-link Nobori and three-link Xience Xpedition (n = 6 each). The ISA area was quantified using micro-CT. Three-time KBI was effective in reducing the ISA area compared with one-time KBI for both the Nobori (p = 0.05) and Xience Xpedition (p = 0.07). The ISA area was smaller in the Nobori than in the Xience Xpedition, both in one-time and three-time KBI (one-time KBI: p = 0.003; three-time KBI: p = 0.001). Our findings of this study on reducing the ISA area by focusing on an interventional technique and stent design may help to improve coronary bifurcation intervention for a possibly better long-term clinical outcome.

  11. New Discrete Element Models for Three-Dimensional Impact Problems

    Institute of Scientific and Technical Information of China (English)

    SHAN Li; CHENG Ming; LIU Kai-xin; LIU Wei-Fu; CHEN Shi-Yang

    2009-01-01

    Two 3-D numerical models of the discrete element method(DEM)for impact problems are proposed.The models can calculate not only the impact problems of continuum and non-continuum,but also the transient process from continuum to non-continuum.The stress wave propagation in a concrete block and a dynamic splitting process of a marble disc under impact loading are numerically simulated with the proposed models.By comparing the numerical results with the corresponding results obtained by the finite element method(FEM)and the experiments,it is proved that the models are reliable for three-dimensional impact problems.

  12. Three-dimensional numerical modeling of nearshore circulation

    Institute of Scientific and Technical Information of China (English)

    SUN Detong

    2008-01-01

    A three-dimensional nearshore circulation model was developed by coupling CH3D, a three-dimensional hydrodynamic model and REF/DIF, a nearsbore wave transformation model. The model solves the three-dimensional wave-averaged equations of motion. Wave-induced effects on circulation were introduced in the form of radiation stresses, wave-induced mass transport, wave-induced enhancement of bottom friction and wave-induced turbulent mixing. Effects of breaking waves were considered following Svendsen (1984a and 1984b) and Stive and Wind (1986). The model was successfully tested against the analytical solution of longshore currents by Longuet and Higgins (1970). The model successfully simulated the undertow as observed in a laboratory experiment by Stive and Wind (1982). In addition, the model was applied to a physical model by Mory and Hamm (1997) and successfully reproduced the eddy behind a detached breakwater as well as the longshore current on the open beach and the contiguous eddy in the open area of the wave tank. While the qualitative agreement between model results and experimental observations was very good, the quantitative agreement needs to be further improved. Albeit difficult to explain every discrepancy between the model re- suits and observations, in general, sources of errors are attributed to the lack of understanding and comprehensive description of following processes: (1) the horizontal and vertical distribution of radiation stress, especially for breaking waves; (2) the detailed structure of turbulence;(3)Wave-current interaction (not included at this moment) ; and (4)the wave- current boundary layer and the resulting bottom shear stress.

  13. Three Dimensional Vapor Intrusion Modeling: Model Validation and Uncertainty Analysis

    Science.gov (United States)

    Akbariyeh, S.; Patterson, B.; Rakoczy, A.; Li, Y.

    2013-12-01

    Volatile organic chemicals (VOCs), such as chlorinated solvents and petroleum hydrocarbons, are prevalent groundwater contaminants due to their improper disposal and accidental spillage. In addition to contaminating groundwater, VOCs may partition into the overlying vadose zone and enter buildings through gaps and cracks in foundation slabs or basement walls, a process termed vapor intrusion. Vapor intrusion of VOCs has been recognized as a detrimental source for human exposures to potential carcinogenic or toxic compounds. The simulation of vapor intrusion from a subsurface source has been the focus of many studies to better understand the process and guide field investigation. While multiple analytical and numerical models were developed to simulate the vapor intrusion process, detailed validation of these models against well controlled experiments is still lacking, due to the complexity and uncertainties associated with site characterization and soil gas flux and indoor air concentration measurement. In this work, we present an effort to validate a three-dimensional vapor intrusion model based on a well-controlled experimental quantification of the vapor intrusion pathways into a slab-on-ground building under varying environmental conditions. Finally, a probabilistic approach based on Monte Carlo simulations is implemented to determine the probability distribution of indoor air concentration based on the most uncertain input parameters.

  14. Three-Dimensional Model for Strip Hot Rolling

    Institute of Scientific and Technical Information of China (English)

    ZHANG Guo-min; XIAO Hong; WANG Chun-hua

    2006-01-01

    A three-dimensional model for strip hot rolling was developed, in which the plastic deformation of strip, the thermal crown of rolls, roll deflection and flattening were calculated by rigid-plastic finite element method, finite difference method, influential function method and elastic finite element method respectively. The roll wear was taken into consideration. The model can provide detailed information such as rolling pressure distribution, contact pressure distribution between backup rolls and work rolls, deflection and flattening of work rolls, lateral distribution of strip thickness, and lateral distribution of front and back tensions. The finish rolling on a 1 450 mm hot strip mill was simulated.

  15. Three-dimensional nanojunction device models for photovoltaics

    Science.gov (United States)

    Wangperawong, Artit; Bent, Stacey F.

    2011-06-01

    A model is developed to describe the behavior of three-dimensionally nanostructured photovoltaic devices, distinguishing between isolated radial pn junctions and interdigitated pn junctions. We examine two specific interdigitated architectures, the point-contact nanojunction and the extended nanojunction, which are most relevant to experimental devices reported to date but have yet to be distinguished in the field. The model is also applied to polycrystalline CdTe devices with inverted grain boundaries. We demonstrate that for CdTe/CdS solar cells using low-quality materials, the efficiency of the extended nanojunction geometry is superior to other designs considered.

  16. Detection of anomalous splenic artery aneurysms with three-dimensional contrast-enhanced MR angiography.

    Science.gov (United States)

    Liu, Qi; Lu, Jian Ping; Wang, Fei; Wang, Li; Jin, Ai Guo; Wang, Jian; Tian, Jian Min

    2009-11-01

    Aneurysms of the splenic artery which arise anomalously from the superior mesenteric artery are extremely rare but clinically important because of their life-threatening hemorrhage. Diagnostic imaging plays an important role in the diagnosis and conducting treatment strategy. The aim of this study was to evaluate the detection of anomalous splenic artery aneurysms with 3D contrast-enhanced MR angiography. 3D contrast-enhanced MR angiography was performed in six patients with anomalous splenic artery aneurysms. The mean diameter of six aneurysms was 3.9 cm. All of them were saccular and located at the origin of the splenic artery that arose anomalously from the root of the superior mesenteric artery. 3D contrast-enhanced MR angiography clearly demonstrated the aneurysm's location, size, morphology, visceral arterial variations, and was superior to DSA in three-dimensional display of the aneurysm and its relationship with surrounding vessels and organs. Two patients underwent open vascular surgery and three endovascular procedure. 3D contrast-enhanced MR angiography is a noninvasive and accurate technique for diagnosis of anomalous splenic artery aneurysms. Its 3D anatomic information is very helpful for treatment planning. It can be used as one of the first choice examinations for anomalous splenic artery aneurysms.

  17. Critical exponents of a three dimensional O(4) spin model

    CERN Document Server

    Kanaya, K; Kanaya, K; Kaya, S

    1995-01-01

    By Monte Carlo simulation we study the critical exponents governing the transition of the three-dimensional classical O(4) Heisenberg model, which is considered to be in the same universality class as the finite-temperature QCD with massless two flavors. We use the single cluster algorithm and the histogram reweighting technique to obtain observables at the critical temperature. After estimating an accurate value of the inverse critical temperature \\Kc=0.9360(1) we make non-perturbative estimates for various critical exponents by finite-size scaling analysis. They are in excellent agreement with those obtained with the 4-\\epsilon expansion method with errors reduced to about halves of them.

  18. Complete wetting in the three-dimensional transverse Ising model

    Science.gov (United States)

    Harris, A. B.; Micheletti, C.; Yeomans, J. M.

    1996-08-01

    We consider a three-dimensional Ising model in a transverse magnetic field h and a bulk field H. An interface is introduced by an appropriate choice of boundary conditions. At the point ( H=0, h=0) spin configurations corresponding to different positions of the interface are degenerate. By studying the phase diagram near this multiphase point using quantum mechanical perturbation theory, we show that the quantum fluctuations, controlled by h, split the multiphase degeneracy giving rise to an infinite sequence of layering transitions.

  19. Ising Model Coupled to Three-Dimensional Quantum Gravity

    CERN Document Server

    Baillie, C F

    1992-01-01

    We have performed Monte Carlo simulations of the Ising model coupled to three-dimensional quantum gravity based on a summation over dynamical triangulations. These were done both in the microcanonical ensemble, with the number of points in the triangulation and the number of Ising spins fixed, and in the grand canoncal ensemble. We have investigated the two possible cases of the spins living on the vertices of the triangulation (``diect'' case) and the spins living in the middle of the tetrahedra (``dual'' case). We observed phase transitions which are probably second order, and found that the dual implementation more effectively couples the spins to the quantum gravity.

  20. Transect-based Three-Dimensional Road Modeling and Visualization

    Institute of Scientific and Technical Information of China (English)

    LI Qingquan; TANG Luliang; ZUO Xiaoqing; LI Hanwu

    2004-01-01

    On the basis of the study on road elements and the existing three-dimensional road data models, this paper puts forward the transect-based road modeling, resolves the modeling of the simplest road with two road transects, and fulfils the visualization of the road. OpenGL is applied as the tool of visualization. The map texture technology, LOD algorithm and dynamic multi-differentiating texture technology are of benefit to the construction of 3D road GIS, and improve the speed of roaming and effective visualization. This paper also disusses the combination of 2D digitall road map and 3D road scene, and the dynamic response between them. Finally, on the basis of the research on the transect-based road model, this paper develops the three-dimensional road geographic information system called virtual road ( VRoad ), which not only supplies road designers with a set of tool which can turn the designed 2D road data into 3D road and the high road assistant function area in computer, but also supplies the road management with a set of tool which can realize the road real time and interactive roaming, high-efficiency management.

  1. Three-dimensional cell culture models for investigating human viruses.

    Science.gov (United States)

    He, Bing; Chen, Guomin; Zeng, Yi

    2016-10-01

    Three-dimensional (3D) culture models are physiologically relevant, as they provide reproducible results, experimental flexibility and can be adapted for high-throughput experiments. Moreover, these models bridge the gap between traditional two-dimensional (2D) monolayer cultures and animal models. 3D culture systems have significantly advanced basic cell science and tissue engineering, especially in the fields of cell biology and physiology, stem cell research, regenerative medicine, cancer research, drug discovery, and gene and protein expression studies. In addition, 3D models can provide unique insight into bacteriology, virology, parasitology and host-pathogen interactions. This review summarizes and analyzes recent progress in human virological research with 3D cell culture models. We discuss viral growth, replication, proliferation, infection, virus-host interactions and antiviral drugs in 3D culture models.

  2. Three Dimensional Modeling of an MRI Actuated Steerable Catheter System.

    Science.gov (United States)

    Liu, Taoming; Cavuşoğlu, M Cenk

    2014-01-01

    This paper presents the three dimensional kinematic modeling of a novel steerable robotic ablation catheter system. The catheter, embedded with a set of current-carrying micro-coils, is actuated by the magnetic forces generated by the magnetic field of the MRI scanner. This paper develops a 3D model of the MRI actuated steerable catheter system by using finite differences approach. For each finite segment, a quasi-static torque-deflection equilibrium equation is calculated using beam theory. By using the deflection displacements and torsion angles, the kinematic modeling of the catheter system is derived. The proposed models are evaluated by comparing the simulation results of the proposed model with the experimental results of a proof-of-concept prototype.

  3. Automated photogrammetry for three-dimensional models of urban spaces

    Science.gov (United States)

    Leberl, Franz; Meixner, Philipp; Wendel, Andreas; Irschara, Arnold

    2012-02-01

    The location-aware Internet is inspiring intensive work addressing the automated assembly of three-dimensional models of urban spaces with their buildings, circulation spaces, vegetation, signs, even their above-ground and underground utility lines. Two-dimensional geographic information systems (GISs) and municipal utility information exist and can serve to guide the creation of models being built with aerial, sometimes satellite imagery, streetside images, indoor imaging, and alternatively with light detection and ranging systems (LiDARs) carried on airplanes, cars, or mounted on tripods. We review the results of current research to automate the information extraction from sensor data. We show that aerial photography at ground sampling distances (GSD) of 1 to 10 cm is well suited to provide geometry data about building facades and roofs, that streetside imagery at 0.5 to 2 cm is particularly interesting when it is collected within community photo collections (CPCs) by the general public, and that the transition to digital imaging has opened the no-cost option of highly overlapping images in support of a more complete and thus more economical automation. LiDAR-systems are a widely used source of three-dimensional data, but they deliver information not really superior to digital photography.

  4. Recursive three-dimensional model reconstruction based on Kalman filtering.

    Science.gov (United States)

    Yu, Ying Kin; Wong, Kin Hong; Chang, Michael Ming Yuen

    2005-06-01

    A recursive two-step method to recover structure and motion from image sequences based on Kalman filtering is described in this paper. The algorithm consists of two major steps. The first step is an extended Kalman filter (EKF) for the estimation of the object's pose. The second step is a set of EKFs, one for each model point, for the refinement of the positions of the model features in the three-dimensional (3-D) space. These two steps alternate from frame to frame. The initial model converges to the final structure as the image sequence is scanned sequentially. The performance of the algorithm is demonstrated with both synthetic data and real-world objects. Analytical and empirical comparisons are made among our approach, the interleaved bundle adjustment method, and the Kalman filtering-based recursive algorithm by Azarbayejani and Pentland. Our approach outperformed the other two algorithms in terms of computation speed without loss in the quality of model reconstruction.

  5. Three-dimensional percolation modeling of self-healing composites.

    Science.gov (United States)

    Dementsov, Alexander; Privman, Vladimir

    2008-08-01

    We study the self-healing process of materials with embedded "glue"-carrying cells, in the regime of the onset of the initial fatigue. Three-dimensional numerical simulations within the percolation-model approach are reported. The main numerical challenge taken up in the present work has been to extend the calculation of the conductance to three-dimensional lattices. Our results confirm the general features of the process: The onset of material fatigue is delayed, by development of a plateaulike time dependence of the material quality. We demonstrate that, in this low-damage regime, the changes in the conductance and thus in similar transport and response properties of the material can be used as measures of the material quality degradation. A new feature found for three dimensions, where it is much more profound than in earlier-studied two-dimensional systems, is the competition between the healing cells. Even for low initial densities of the healing cells, they interfere with each other and reduce each other's effective healing efficiency.

  6. Modeling three-dimensional morphological structures using spherical harmonics.

    Science.gov (United States)

    Shen, Li; Farid, Hany; McPeek, Mark A

    2009-04-01

    Quantifying morphological shape is a fundamental issue in evolutionary biology. Recent technological advances (e.g., confocal microscopy, laser scanning, computer tomography) have made the capture of detailed three-dimensional (3D) morphological structure easy and cost-effective. In this article, we develop a 3D analytic framework (SPHARM-spherical harmonics) for modeling the shapes of complex morphological structures from continuous surface maps that can be produced by these technologies. Because the traditional SPHARM methodology has limitations in several of its processing steps, we present new algorithms for two SPHARM processing steps: spherical parameterization and SPHARM registration. These new algorithms allow for the numerical characterization of a much larger class of 3D models. We demonstrate the effectiveness of the method by applying it to modeling the cerci of Enallagma damselflies.

  7. Three-dimensional chemotaxis model for a crawling neutrophil.

    Science.gov (United States)

    Song, Jihwan; Kim, Dongchoul

    2010-11-01

    Chemotactic cell migration is a fundamental phenomenon in complex biological processes. A rigorous understanding of the chemotactic mechanism of crawling cells has important implications for various medical and biological applications. In this paper, we propose a three-dimensional model of a single crawling cell to study its chemotaxis. A single-cell study of chemotaxis has an advantage over studies of a population of cells in that it provides a clearer observation of cell migration, which leads to more accurate assessments of chemotaxis. The model incorporates the surface energy of the cell and the interfacial interaction between the cell and substrate. The semi-implicit Fourier spectral method is applied to achieve high efficiency and numerical stability. The simulation results provide the kinetic and morphological traits of a crawling cell during chemotaxis.

  8. Three-Dimensional Numerical Modeling of Magnetohydrodynamic Augmented Propulsion Experiment

    Science.gov (United States)

    Turner, M. W.; Hawk, C. W.; Litchford, R. J.

    2009-01-01

    Over the past several years, NASA Marshall Space Flight Center has engaged in the design and development of an experimental research facility to investigate the use of diagonalized crossed-field magnetohydrodynamic (MHD) accelerators as a possible thrust augmentation device for thermal propulsion systems. In support of this effort, a three-dimensional numerical MHD model has been developed for the purpose of analyzing and optimizing accelerator performance and to aid in understanding critical underlying physical processes and nonideal effects. This Technical Memorandum fully summarizes model development efforts and presents the results of pretest performance optimization analyses. These results indicate that the MHD accelerator should utilize a 45deg diagonalization angle with the applied current evenly distributed over the first five inlet electrode pairs. When powered at 100 A, this configuration is expected to yield a 50% global efficiency with an 80% increase in axial velocity and a 50% increase in centerline total pressure.

  9. Three-dimensional antenna models for fusion experiments

    Science.gov (United States)

    Carter, M. D.; Wang, C. Y.; Hogan, J. T.; Harris, J. H.; Hoffman, D. J.; Rasmussen, D. A.; Ryan, P. M.; Stallings, D. S.; Batchelor, D. B.; Beaumont, B.; Hutter, T.; Saoutic, B.

    1996-02-01

    The development of the RANT3D code has permitted the systematic study of the effect of three-dimensional structures on the launched power spectrum for antennas in the ion cyclotron range of frequencies. The code allows the septa between current straps to be modeled with arbitrary heights and permits the antenna to interact with other structures in the tokamak. In this paper we present comparisons of calculated loading with the Tokamak Fusion Test Reactor and Tore Supra experiments, demonstrate the effects on loading caused by positioning uncertainties for an antenna in Tore Supra, and show electric field patterns near the Tore Supra antenna. A poloidal component in the static magnetic field for the plasma response is included in the near-field calculations using the warm plasma code, GLOSI. Preliminary estimates for the heat flux on the bumper limiters during typical operation in Tore Supra are also presented.

  10. Three-dimensional antenna models for fusion experiments

    Energy Technology Data Exchange (ETDEWEB)

    Carter, M.D.; Wang, C.Y.; Hogan, J.T.; Harris, J.H.; Hoffman, D.J.; Rasmussen, D.A.; Ryan, P.M.; Stallings, D.S.; Batchelor, D.B. [Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-8071, (United States); Beaumont, B.; Hutter, T.; Saoutic, B. [Association Euratom-CEA, Department de Recherche sur la Fusion Controlee, Centre d`Etudes de Cadarache, 13108 Saint Paul Lez Durance, Cedex (France)

    1996-02-01

    The development of the RANT3D code has permitted the systematic study of the effect of three-dimensional structures on the launched power spectrum for antennas in the ion cyclotron range of frequencies. The code allows the septa between current straps to be modeled with arbitrary heights and permits the antenna to interact with other structures in the tokamak. In this paper we present comparisons of calculated loading with the Tokamak Fusion Test Reactor and Tore Supra experiments, demonstrate the effects on loading caused by positioning uncertainties for an antenna in Tore Supra, and show electric field patterns near the Tore Supra antenna. A poloidal component in the static magnetic field for the plasma response is included in the near-field calculations using the warm plasma code, GLOSI. Preliminary estimates for the heat flux on the bumper limiters during typical operation in Tore Supra are also presented. {copyright} {ital 1996 American Institute of Physics.}

  11. Lattice gauge theory of three dimensional Thirring model

    CERN Document Server

    Kim, S; Kim, Seyong; Kim, Yoonbai

    1999-01-01

    Three dimensional Thirring model with N four-component Dirac fermions, reformulated as a lattice gauge theory, is studied by computer simulation. According to an 8^{3} data and preliminary 16^3 data, chiral symmetry is found to be spontaneously broken for N=2,\\;4 and 6. N=2 data exhibits long tail of the non-vanishing chiral condensate into weak coupling region, and N=6 case shows phase separation between the strong coupling region and the weak coupling region. Although the comparison between 8^3 data and 16^3 data shows large finite volume effects, an existence of the critical fermion flavor number N_{{\\rm cr}} (2

  12. Digital Moon: A three-dimensional framework for lunar modeling

    Science.gov (United States)

    Paige, D. A.; Elphic, R. C.; Foote, E. J.; Meeker, S. R.; Siegler, M. A.; Vasavada, A. R.

    2009-12-01

    The Moon has a complex three-dimensional shape with significant large-scale and small-scale topographic relief. The Moon’s topography largely controls the distribution of incident solar radiation, as well as the scattered solar and infrared radiation fields. Topography also affects the Moon’s interaction with the space environment, its magnetic field, and the propagation of seismic waves. As more extensive and detailed lunar datasets become available, there is an increasing need to interpret and compare them with the results of physical models in a fully three-dimensional context. We have developed a three-dimensional framework for lunar modeling we call the Digital Moon. The goal of this work is to enable high fidelity physical modeling and visualization of the Moon in a parallel computing environment. The surface of the Moon is described by a continuous triangular mesh of arbitrary shape and spatial scale. For regions of limited geographic extent, it is convenient to employ meshes on a rectilinear grid. However for global-scale modeling, we employ a continuous geodesic gridding scheme (Teanby, 2008). Each element in the mesh surface is allowed to have a unique set of physical properties. Photon and particle interactions between mesh elements are modeled using efficient ray tracing algorithms. Heat, mass, photon and particle transfer within each mesh element are modeled in one dimension. Each compute node is assigned a portion of the mesh and collective interactions between elements are handled through network interfaces. We have used the model to calculate lunar surface and subsurface temperatures that can be compared directly with radiometric temperatures measured by the Diviner Lunar Radiometer Experiment on the Lunar Reconnaissance Orbiter. The model includes realistic surface photometric functions based on goniometric measurements of lunar soil samples (Foote and Paige, 2009), and one-dimensional thermal models based on lunar remote sensing and Apollo

  13. Three-dimensional effects for radio frequency antenna modeling

    Energy Technology Data Exchange (ETDEWEB)

    Carter, M.D.; Batchelor, D.B.; Stallings, D.C.

    1993-12-31

    Electromagnetic field calculations for radio frequency (rf) antennas in two dimensions (2-D) neglect finite antenna length effects as well as the feeders leading to the main current strap. The 2-D calculations predict that the return currents in the sidewalls of the antenna structure depend strongly on the plasma parameters, but this prediction is suspect because of experimental evidence. To study the validity of the 2-D approximation, the Multiple Antenna Implementation System (MAntIS) has been used to perform three-dimensional (3-D) modeling of the power spectrum, plasma loading, and inductance for a relevant loop antenna design. Effects on antenna performance caused by feeders to the main current strap and conducting sidewalls are considered. The modeling shows that the feeders affect the launched power spectrum in an indirect way by forcing the driven rf current to return in the antenna structure rather than the plasma, as in the 2-D model. It has also been found that poloidal dependencies in the plasma impedance matrix can reduce the loading predicted from that predicted in the 2-D model. For some plasma parameters, the combined 3-D effects can lead to a reduction in the predicted loading by as much as a factor of 2 from that given by the 2-D model, even with end-effect corrections for the 2-D model.

  14. Three-dimensional effects for radio frequency antenna modeling

    Science.gov (United States)

    Carter, M. D.; Batchelor, D. B.; Stallings, D. C.

    1994-10-01

    Electromagnetic field calculations for radio frequency (rf) antennas in two dimensions (2-D) neglect finite antenna length effects as well as the feeders leading to the main current strap. The 2-D calculations predict that the return currents in the sidewalls of the antenna structure depend strongly on the plasma parameters, but this prediction is suspect because of experimental evidence. To study the validity of the 2-D approximation, the Multiple Antenna Implementation System (MAntIS) has been used to perform three-dimensional (3-D) modeling of the power spectrum, plasma loading, and inductance for a relevant loop antenna design. Effects on antenna performance caused by feeders to the main current strap and conducting sidewalls are considered. The modeling shows that the feeders affect the launched power spectrum in an indirect way by forcing the driven rf current to return in the antenna structure rather than the plasma, as in the 2-D model. It has also been found that poloidal dependencies in the plasma impedance matrix can reduce the loading predicted from that predicted in the 2-D model. For some plasma parameters, the combined 3-D effects can lead to a reduction in the predicted loading by as much as a factor of 2 from that given by the 2-D model, even with end-effect corrections for the 2-D model.

  15. Three-dimensional effects for radio frequency antenna modeling

    Energy Technology Data Exchange (ETDEWEB)

    Carter, M.D.; Batchelor, D.B.; Stallings, D.C. (Oak Ridge National Laboratory, Oak Ridge, Tennessee 37821-8071 (United States))

    1994-10-15

    Electromagnetic field calculations for radio frequency (rf) antennas in two dimensions (2-D) neglect finite antenna length effects as well as the feeders leading to the main current strap. The 2-D calculations predict that the return currents in the sidewalls of the antenna structure depend strongly on the plasma parameters, but this prediction is suspect because of experimental evidence. To study the validity of the 2-D approximation, the Multiple Antenna Implementation System (MAntIS) has been used to perform three-dimensional (3-D) modeling of the power spectrum, plasma loading, and inductance for a relevant loop antenna design. Effects on antenna performance caused by feeders to the main current strap and conducting sidewalls are considered. The modeling shows that the feeders affect the launched power spectrum in an indirect way by forcing the driven rf current to return in the antenna structure rather than the plasma, as in the 2-D model. It has also been found that poloidal dependencies in the plasma impedance matrix can reduce the loading predicted from that predicted in the 2-D model. For some plasma parameters, the combined 3-D effects can lead to a reduction in the predicted loading by as much as a factor of 2 from that given by the 2-D model, even with end-effect corrections for the 2-D model.

  16. Mathematical structure of three - dimensional (3D) Ising model

    CERN Document Server

    Zhang, Zhi-dong

    2013-01-01

    An overview of the mathematical structure of the three-dimensional (3D) Ising model is given, from the viewpoints of topologic, algebraic and geometric aspects. By analyzing the relations among transfer matrices of the 3D Ising model, Reidemeister moves in the knot theory, Yang-Baxter and tetrahedron equations, the following facts are illustrated for the 3D Ising model: 1) The complexified quaternion basis constructed for the 3D Ising model represents naturally the rotation in a (3 + 1) - dimensional space-time, as a relativistic quantum statistical mechanics model, which is consistent with the 4-fold integrand of the partition function by taking the time average. 2) A unitary transformation with a matrix being a spin representation in 2^(nlo)-space corresponds to a rotation in 2nlo-space, which serves to smooth all the crossings in the transfer matrices and contributes as the non-trivial topologic part of the partition function of the 3D Ising model. 3) A tetrahedron relation would ensure the commutativity o...

  17. A three-dimensional thermal and electromagnetic model of whole limb heating with a MAPA.

    Science.gov (United States)

    Charny, C K; Levin, R L

    1991-10-01

    Previous studies by the authors have shown that if properly implemented, the Pennes assumptions can be applied to quantify bioheat transfer during extremity heating. Given its relative numerical simplicity and its ability to predict temperatures in thermoregulated tissue, the Pennes model of bioheat transfer was utilized in a three-dimensional thermal model of limb heating. While the arterial blood temperature was assumed to be radially uniform within a cross section of the limb, axial gradients in the arterial and venous blood temperatures were computed with this three-dimensional model. A realistically shaped, three-dimensional finite element model of a tumor-bearing human lower leg was constructed and was "attached" mathematically to the whole body thermal model of man described in previous studies by the authors. The central as well as local thermoregulatory feedback control mechanisms which determine blood perfusion to the various tissues and rate of evaporation by sweating were input into the limb model. In addition, the temperature of the arterial blood which feeds into the most proximal section of the lower leg was computed by the whole body thermal model. The variations in the shape of the tissues which comprise the limb were obtained from computerized tomography scans. Axial variations in the energy deposition patterns along the length of the limb exposed to a miniannular phased array (MAPA) applicator were also input into this model of limb heating. Results indicate that proper positioning of the limb relative to the MAPA is a significant factor in determining the effectiveness of the treatment. A patient-specific hyperthermia protocol can be designed using this coupled electromagnetic and thermal model.

  18. The innovative concept of three-dimensional hybrid receptor modeling

    Science.gov (United States)

    Stojić, A.; Stanišić Stojić, S.

    2017-09-01

    The aim of this study was to improve the current understanding of air pollution transport processes at regional and long-range scale. For this purpose, three-dimensional (3D) potential source contribution function and concentration weighted trajectory models, as well as new hybrid receptor model, concentration weighted boundary layer (CWBL), which uses a two-dimensional grid and a planetary boundary layer height as a frame of reference, are presented. The refined approach to hybrid receptor modeling has two advantages. At first, it considers whether each trajectory endpoint meets the inclusion criteria based on planetary boundary layer height, which is expected to provide a more realistic representation of the spatial distribution of emission sources and pollutant transport pathways. Secondly, it includes pollutant time series preprocessing to make hybrid receptor models more applicable for suburban and urban locations. The 3D hybrid receptor models presented herein are designed to identify altitude distribution of potential sources, whereas CWBL can be used for analyzing the vertical distribution of pollutant concentrations along the transport pathway.

  19. A three-dimensional model of Tangential YORP

    Energy Technology Data Exchange (ETDEWEB)

    Golubov, O.; Scheeres, D. J. [Department of Aerospace Engineering Sciences, University of Colorado at Boulder 429 UCB, Boulder, CO 80309 (United States); Krugly, Yu. N., E-mail: golubov@astron.kharkov.ua [Institute of Astronomy, V. N. Karazin Kharkiv National University, 35 Sumska Str., Kharkiv, 61022 (Ukraine)

    2014-10-10

    Tangential YORP, or TYORP, has recently been demonstrated to be an important factor in the evolution of an asteroid's rotation state. It is complementary to normal YORP, or NYORP, which used to be considered previously. While NYORP is produced by non-symmetry in the large-scale geometry of an asteroid, TYORP is due to heat conductivity in stones on the surface of the asteroid. To date, TYORP has been studied only in a simplified one-dimensional model, substituting stones with high long walls. This article for the first time considers TYORP in a realistic three-dimensional model, also including shadowing and self-illumination effects via ray tracing. TYORP is simulated for spherical stones lying on regolith. The model includes only five free parameters and the dependence of the TYORP on each of them is studied. The TYORP torque appears to be smaller than previous estimates from the one-dimensional model, but is still comparable to the NYORP torques. These results can be used to estimate TYORP of different asteroids and also as a basis for more sophisticated models of TYORP.

  20. Large-N Analysis of Three Dimensional Nonlinear Sigma Models

    CERN Document Server

    Higashijima, K; Tsuzuki, M; Higashijima, Kiyoshi; Itou, Etsuko; Tsuzuki, Makoto

    2005-01-01

    Non-perturbative renormalization group approach suggests that a large class of nonlinear sigma models are renormalizable in three dimensional space-time, while they are non-renormalizable in perturbation theory. ${\\cal N}=2$ supersymmetric nonlinear sigma models whose target spaces are Einstein-K\\"{a}hler manifolds with positive scalar curvature belongs to this class. hermitian symmetric spaces, being homogeneous, are specially simple examples of these manifolds. To find an independent evidence of the nonperturbative renormalizability of these models, the large N method, another nonperturbative method, is applied to 3-dimensional ${\\cal N}=2$ supersymmetric nonlinear sigma models on the target spaces $CP^{N-1}=SU(N)/[SU(N-1)\\times U(1)]$ and $Q^{N-2}=SO(N)/[SO(N-2)\\times SO(2)]$, two typical examples of hermitian symmetric spaces. We find that $\\beta$ functions in these models agree with the results of the nonperturbative renormalization group approach in the next-to-leading order of 1/N expansion, and have n...

  1. Modeling the three-dimensional structure of ionospheric electrodynamics

    Science.gov (United States)

    Maute, A. I.; Richmond, A. D.

    2015-12-01

    Ionospheric electric fields and currents are driven by collisionalinteraction between thermospheric winds and ions, bymagnetospherically driven convection and field-aligned currents athigh latitudes, by gravitational and pressure-gradient forces on theionospheric plasma, and by weak currents from the lower atmosphere.The electrodynamics of the ionospheric E and F regions are stronglycoupled. For time scales longer than a few minutes the electric fieldis electrostatic. The electric potential is nearly constant alonggeomagnetic-field lines, and can be represented in two dimensions in acoordinate system aligned with the magnetic field. The currentdensity, however, varies in all three dimensions. The associatedperturbations of the geomagnetic field induce currents in the Earth,which modify the perturbations. We are developing a model of ionospheric electrodynamics that takes into account all of the sourcesand calculates the three-dimensional structure of currents andtheir associated magnetic perturbation fields at high spatialresolution. This model will be used to simulate ionospheric drifts aswell as geomagnetic perturbations at the ground, at low-Earth-orbitsatellite heights, and within the E-region ionosphere. When coupledwith a dynamical model of the thermosphere and ionosphere it can beused to assimilate electrodynamic data into the model. In thispresentation we discuss the modeling principles and present resultsrelevant to the electrodynamics of the middle and low latitudeionosphere below 200 km, including the effects of coupling withF-region electrodynamics and the expected observable effects onrockets and on low Earth orbit satellites.

  2. Up and down cascades: three-dimensional magnetic field model.

    Science.gov (United States)

    Blanter, E M; Shnirman, M G; Le Mouël, J L

    2002-06-01

    In our previous works we already have proposed a two-dimensional model of geodynamo. Now we use the same approach to build a three-dimensional self-excited geodynamo model that generates a large scale magnetic field from whatever small initial field, using the up and down cascade effects of a multiscale turbulent system of cyclones. The multiscale system of turbulent cyclones evolves in six domains of an equatorial cylindrical layer of the core. The appearance of new cyclones is realized by two cascades: a turbulent direct cascade and an inverse cascade of coupling of similar cyclones. The interaction between the different domains is effected through a direct cascade parameter which is essential for the statistics of the long-life symmetry breaking. Generation of the secondary magnetic field results from the interaction of the components of the primary magnetic field with the turbulent cyclones. The amplification of the magnetic field is due to the transfer of energy from the turbulent helical motion to the generated magnetic field. The model demonstrates a phase transition through the parameter characterizing this energy transfer. In the supercritical domain we obtain long-term intervals of constant polarity (chrons) and quick reversals; relevant time constants agree with paleomagnetic observations. Possible application of the model to the study of the geometrical structure of the geomagnetic field (and briefly other planetary fields) is discussed.

  3. Three-dimensional antiferromagnetic CP(N-1) models.

    Science.gov (United States)

    Delfino, Francesco; Pelissetto, Andrea; Vicari, Ettore

    2015-05-01

    We investigate the critical behavior of three-dimensional antiferromagnetic CP(N-1) (ACP(N-1)) models in cubic lattices, which are characterized by a global U(N) symmetry and a local U(1) gauge symmetry. Assuming that critical fluctuations are associated with a staggered gauge-invariant (Hermitian traceless matrix) order parameter, we determine the corresponding Landau-Ginzburg-Wilson (LGW) model. For N=3 this mapping allows us to conclude that the three-component ACP(2) model undergoes a continuous transition that belongs to the O(8) vector universality class, with an effective enlargement of the symmetry at the critical point. This prediction is confirmed by numerical analyses of the finite-size scaling behaviors of the ACP(2) and the O(8) vector models, which show the same universal features at their transitions. We also present a renormalization-group (RG) analysis of the LGW theories for N≥4. We compute perturbative series in two different renormalization schemes and analyze the corresponding RG flow. We do not find stable fixed points that can be associated with continuous transitions.

  4. Transmission Spectra of Three-Dimensional Hot Jupiter Model Atmospheres

    CERN Document Server

    Fortney, J J; Showman, A P; Lian, Y; Freedman, R S; Marley, M S; Lewis, N K

    2009-01-01

    We compute models of the transmission spectra of planets HD 209458b, HD 189733b, and generic hot Jupiters. We examine the effects of temperature, surface gravity, and metallicity for the generic planets as a guide to understanding transmission spectra in general. We find that carbon dioxide absorption at 4.4 and 15 microns is prominent at high metallicity, and is a clear metallicity indicator. For HD 209458b and HD 189733b, we compute spectra for both one-dimensional and three-dimensional model atmospheres and examine the differences between them. The differences are usually small, but can be large if atmospheric temperatures are near important chemical abundance boundaries. The calculations for the 3D atmospheres, and their comparison with data, serve as constraints on these dynamical models that complement the secondary eclipse and light curve data sets. For HD 209458b, even if TiO and VO gases are abundant on the day side, their abundances can be considerably reduced on the cooler planetary limb. However, ...

  5. Three-dimensional lattice Boltzmann model for electrodynamics.

    Science.gov (United States)

    Mendoza, M; Muñoz, J D

    2010-11-01

    In this paper we introduce a three-dimensional Lattice-Boltzmann model that recovers in the continuous limit the Maxwell equations in materials. In order to build conservation equations with antisymmetric tensors, like the Faraday law, the model assigns four auxiliary vectors to each velocity vector. These auxiliary vectors, when combined with the distribution functions, give the electromagnetic fields. The evolution is driven by the usual Bhatnager-Gross-Krook (BGK) collision rule, but with a different form for the equilibrium distribution functions. This lattice Bhatnager-Gross-Krook (LBGK) model allows us to consider for both dielectrics and conductors with realistic parameters, and therefore it is adequate to simulate the most diverse electromagnetic problems, like the propagation of electromagnetic waves (both in dielectric media and in waveguides), the skin effect, the radiation pattern of a small dipole antenna and the natural frequencies of a resonant cavity, all with 2% accuracy. Actually, it shows to be one order of magnitude faster than the original Finite-difference time-domain (FDTD) formulation by Yee to reach the same accuracy. It is, therefore, a valuable alternative to simulate electromagnetic fields and opens lattice Boltzmann for a broad spectrum of new applications in electrodynamics.

  6. Modelling for three dimensional coalescence of two bubbles

    Science.gov (United States)

    Han, R.; Li, S.; Zhang, A. M.; Wang, Q. X.

    2016-06-01

    This paper is concerned with the three dimensional (3D) interaction and coalescence of two bubbles subject to buoyancy and the dynamics of the subsequent joined bubble using the boundary integral method (BIM). An improved density potential method is implemented to control the mesh quality. It helps to avoid the numerical instabilities, which occur after coalescence. Numerical convergence tests are conducted in terms of mesh sizes and time steps. The 3D numerical model agrees well with an axisymmetric BIM model for axisymmetric cases as well as experimental results captured by high-speed camera. The bubble jetting, interaction, and coalescence of the two bubbles depend on the maximum bubble radii, the centre distance between two bubbles at inception, and the angle β between the centre line and the direction of buoyancy. We investigate coalescence of two bubbles for β = 0, π/4, and π/2, respectively, and at various centre distances at inception. Numerical results presented include the bubble and jet shapes, the velocity, and pressure fields surrounding the bubbles, as well as the time histories of bubble volumes, jet velocities, and positions of centroid of the bubble system.

  7. Three-Dimensional Modeling of Quasi-Homologous Solar Jets

    Science.gov (United States)

    Pariat, E.; Antiochos, S. K.; DeVore, C. R.

    2010-01-01

    Recent solar observations (e.g., obtained with Hinode and STEREO) have revealed that coronal jets are a more frequent phenomenon than previously believed. This higher frequency results, in part, from the fact that jets exhibit a homologous behavior: successive jets recur at the same location with similar morphological features. We present the results of three-dimensional (31)) numerical simulations of our model for coronal jets. This study demonstrates the ability of the model to generate recurrent 3D untwisting quasi-homologous jets when a stress is constantly applied at the photospheric boundary. The homology results from the property of the 3D null-point system to relax to a state topologically similar to its initial configuration. In addition, we find two distinct regimes of reconnection in the simulations: an impulsive 3D mode involving a helical rotating current sheet that generates the jet, and a quasi-steady mode that occurs in a 2D-like current sheet located along the fan between the sheared spines. We argue that these different regimes can explain the observed link between jets and plumes.

  8. Modeling Three-Dimensional Chromosome Structures Using Gene Expression Data.

    Science.gov (United States)

    Xiao, Guanghua; Wang, Xinlei; Khodursky, Arkady B

    2011-03-01

    Recent genomic studies have shown that significant chromosomal spatial correlation exists in gene expression of many organisms. Interestingly, coexpression has been observed among genes separated by a fixed interval in specific regions of a chromosome chain, which is likely caused by three-dimensional (3D) chromosome folding structures. Modeling such spatial correlation explicitly may lead to essential understandings of 3D chromosome structures and their roles in transcriptional regulation. In this paper, we explore chromosomal spatial correlation induced by 3D chromosome structures, and propose a hierarchical Bayesian method based on helical structures to formally model and incorporate the correlation into the analysis of gene expression microarray data. It is the first study to quantify and infer 3D chromosome structures in vivo using expression microarrays. Simulation studies show computing feasibility of the proposed method and that, under the assumption of helical chromosome structures, it can lead to precise estimation of structural parameters and gene expression levels. Real data applications demonstrate an intriguing biological phenomenon that functionally associated genes, which are far apart along the chromosome chain, are brought into physical proximity by chromosomal folding in 3D space to facilitate their coexpression. It leads to important biological insight into relationship between chromosome structure and function.

  9. Three-Dimensional Modeling of Fracture Clusters in Geothermal Reservoirs

    Energy Technology Data Exchange (ETDEWEB)

    Ghassemi, Ahmad [Univ. of Oklahoma, Norman, OK (United States)

    2017-08-11

    The objective of this is to develop a 3-D numerical model for simulating mode I, II, and III (tensile, shear, and out-of-plane) propagation of multiple fractures and fracture clusters to accurately predict geothermal reservoir stimulation using the virtual multi-dimensional internal bond (VMIB). Effective development of enhanced geothermal systems can significantly benefit from improved modeling of hydraulic fracturing. In geothermal reservoirs, where the temperature can reach or exceed 350oC, thermal and poro-mechanical processes play an important role in fracture initiation and propagation. In this project hydraulic fracturing of hot subsurface rock mass will be numerically modeled by extending the virtual multiple internal bond theory and implementing it in a finite element code, WARP3D, a three-dimensional finite element code for solid mechanics. The new constitutive model along with the poro-thermoelastic computational algorithms will allow modeling the initiation and propagation of clusters of fractures, and extension of pre-existing fractures. The work will enable the industry to realistically model stimulation of geothermal reservoirs. The project addresses the Geothermal Technologies Office objective of accurately predicting geothermal reservoir stimulation (GTO technology priority item). The project goal will be attained by: (i) development of the VMIB method for application to 3D analysis of fracture clusters; (ii) development of poro- and thermoelastic material sub-routines for use in 3D finite element code WARP3D; (iii) implementation of VMIB and the new material routines in WARP3D to enable simulation of clusters of fractures while accounting for the effects of the pore pressure, thermal stress and inelastic deformation; (iv) simulation of 3D fracture propagation and coalescence and formation of clusters, and comparison with laboratory compression tests; and (v) application of the model to interpretation of injection experiments (planned by our

  10. Use of a Three Dimensional Printed Cardiac Model to Assess Suitability for Biventricular Repair.

    Science.gov (United States)

    Farooqi, Kanwal M; Gonzalez-Lengua, Carlos; Shenoy, Rajesh; Sanz, Javier; Nguyen, Khanh

    2016-05-01

    Three dimensional (3D) printing is rapidly gaining interest in the medical field for use in presurgical planning. We present the case of a seven-year-old boy with double outlet right ventricle who underwent a bidirectional Glenn anastomosis. We used a 3D cardiac model to assess his suitability for a biventricular repair. He underwent a left ventricle-to-aorta baffle with a right ventricle-to-pulmonary artery conduit placement. He did well postoperatively and was discharged home with no evidence of baffle obstruction and good biventricular function. A 3D printed model can provide invaluable intracardiac spatial information in these complex patients.

  11. A Three-Dimensional Model of the Yeast Genome

    Science.gov (United States)

    Noble, William; Duan, Zhi-Jun; Andronescu, Mirela; Schutz, Kevin; McIlwain, Sean; Kim, Yoo Jung; Lee, Choli; Shendure, Jay; Fields, Stanley; Blau, C. Anthony

    Layered on top of information conveyed by DNA sequence and chromatin are higher order structures that encompass portions of chromosomes, entire chromosomes, and even whole genomes. Interphase chromosomes are not positioned randomly within the nucleus, but instead adopt preferred conformations. Disparate DNA elements co-localize into functionally defined aggregates or factories for transcription and DNA replication. In budding yeast, Drosophila and many other eukaryotes, chromosomes adopt a Rabl configuration, with arms extending from centromeres adjacent to the spindle pole body to telomeres that abut the nuclear envelope. Nonetheless, the topologies and spatial relationships of chromosomes remain poorly understood. Here we developed a method to globally capture intra- and inter-chromosomal interactions, and applied it to generate a map at kilobase resolution of the haploid genome of Saccharomyces cerevisiae. The map recapitulates known features of genome organization, thereby validating the method, and identifies new features. Extensive regional and higher order folding of individual chromosomes is observed. Chromosome XII exhibits a striking conformation that implicates the nucleolus as a formidable barrier to interaction between DNA sequences at either end. Inter-chromosomal contacts are anchored by centromeres and include interactions among transfer RNA genes, among origins of early DNA replication and among sites where chromosomal breakpoints occur. Finally, we constructed a three-dimensional model of the yeast genome. Our findings provide a glimpse of the interface between the form and function of a eukaryotic genome.

  12. Three-dimensional parabolic equation modeling of mesoscale eddy deflection.

    Science.gov (United States)

    Heaney, Kevin D; Campbell, Richard L

    2016-02-01

    The impact of mesoscale oceanography, including ocean fronts and eddies, on global scale low-frequency acoustics is examined using a fully three-dimensional parabolic equation model. The narrowband acoustic signal, for frequencies from 2 to 16 Hz, is simulated from a seismic event on the Kerguellen Plateau in the South Indian Ocean to an array of receivers south of Ascension Island in the South Atlantic, a distance of 9100 km. The path was chosen for its relevance to seismic detections from the HA10 Ascension Island station of the International Monitoring System, for its lack of bathymetric interaction, and for the dynamic oceanography encountered as the sound passes the Cape of Good Hope. The acoustic field was propagated through two years (1992 and 1993) of the eddy-permitting ocean state estimation ECCO2 (Estimating the Circulation and Climate of the Ocean, Phase II) system. The range of deflection of the back-azimuth was 1.8° with a root-mean-square of 0.34°. The refraction due to mesoscale oceanography could therefore have significant impacts upon localization of distant low-frequency sources, such as seismic or nuclear test events.

  13. A regional adaptive and assimilative three-dimensional ionospheric model

    Science.gov (United States)

    Sabbagh, Dario; Scotto, Carlo; Sgrigna, Vittorio

    2016-03-01

    A regional adaptive and assimilative three-dimensional (3D) ionospheric model is proposed. It is able to ingest real-time data from different ionosondes, providing the ionospheric bottomside plasma frequency fp over the Italian area. The model is constructed on the basis of empirical values for a set of ionospheric parameters Pi[base] over the considered region, some of which have an assigned variation ΔPi. The values for the ionospheric parameters actually observed at a given time at a given site will thus be Pi = Pi[base] + ΔPi. These Pi values are used as input for an electron density N(h) profiler. The latter is derived from the Advanced Ionospheric Profiler (AIP), which is software used by Autoscala as part of the process of automatic inversion of ionogram traces. The 3D model ingests ionosonde data by minimizing the root-mean-square deviation between the observed and modeled values of fp(h) profiles obtained from the associated N(h) values at the points where observations are available. The ΔPi values are obtained from this minimization procedure. The 3D model is tested using data collected at the ionospheric stations of Rome (41.8N, 12.5E) and Gibilmanna (37.9N, 14.0E), and then comparing the results against data from the ionospheric station of San Vito dei Normanni (40.6N, 18.0E). The software developed is able to produce maps of the critical frequencies foF2 and foF1, and of fp at a fixed altitude, with transverse and longitudinal cross-sections of the bottomside ionosphere in a color scale. fp(h) and associated simulated ordinary ionogram traces can easily be produced for any geographic location within the Italian region. fp values within the volume in question can also be provided.

  14. Anatomical Reproducibility of a Head Model Molded by a Three-dimensional Printer.

    Science.gov (United States)

    Kondo, Kosuke; Nemoto, Masaaki; Masuda, Hiroyuki; Okonogi, Shinichi; Nomoto, Jun; Harada, Naoyuki; Sugo, Nobuo; Miyazaki, Chikao

    2015-01-01

    We prepared rapid prototyping models of heads with unruptured cerebral aneurysm based on image data of computed tomography angiography (CTA) using a three-dimensional (3D) printer. The objective of this study was to evaluate the anatomical reproducibility and accuracy of these models by comparison with the CTA images on a monitor. The subjects were 22 patients with unruptured cerebral aneurysm who underwent preoperative CTA. Reproducibility of the microsurgical anatomy of skull bone and arteries, the length and thickness of the main arteries, and the size of cerebral aneurysm were compared between the CTA image and rapid prototyping model. The microsurgical anatomy and arteries were favorably reproduced, apart from a few minute regions, in the rapid prototyping models. No significant difference was noted in the measured lengths of the main arteries between the CTA image and rapid prototyping model, but errors were noted in their thickness (p 3D printer. It was concluded that these models are useful tools for neurosurgical simulation. The thickness of the main arteries and size of cerebral aneurysm should be comprehensively judged including other neuroimaging in consideration of errors.

  15. Three-dimensional Thermal Model of the Mexican Subduction Zone

    Science.gov (United States)

    Rosas, J. C.; Pimentel, F. D. C.; Currie, C. A.; He, J.; Harris, R. N.

    2015-12-01

    Along the Mexican section of the Middle America Trench (MAT), the Cocos plate subducts beneath the North American plate. The most important feature of this subduction zone is the flat-slab section below central Mexico, extending approximately 250 km landward from the trench at a depth of 50 km. Further west, the dip changes to 45-50º. This particular geometry has several unique consequences, such as a volcanic arc that is not aligned with the trench and very shallow slab seismicity. For the mantle wedge, the abrupt change in slab geometry could lead to a three-dimensional (3D) mantle wedge flow that departs from the classical 2D subduction-driven corner flow. Evidence of 3D flow in the region comes from seismic anisotropy studies, which show that olivine fast-direction axes have a component that is parallel to the MAT. In other subduction zones, such as Costa Rica-Nicaragua and Japan, 3D flow has been observed to increase temperatures by >50º C relative to corner flow models.For this study, we have created the first 3D finite-element model of the Mexican subduction zone in order to analyze its thermal structure. Our objective is to assess the effects of 3D mantle flow and hydrothermal circulation (HC) in the subducting slab. In this region, low surface heat flow values near the trench indicate that HC may remove heat from the oceanic plate. Our model incorporates the effect of HC through conductivity proxies in the subducting crust and a 2D oceanic geotherm that includes the age variations of the Cocos plate along the MAT. For an isoviscous mantle, our model shows that the slab dip variations induce a flow that departs from 2D corner flow near the transition between the flat-slab and normal-dipping sections. The mantle flows in eastward direction toward the flat slab, and its orientation is consistent with seismic anisotropy studies. The maximum along-margin flow rate is nearly 2 cm/yr, which is >30% of the convergence rate. Temperatures at the location of this

  16. Three-Dimensional Multiscale MHD Model of Cometary Plasma Environments

    Science.gov (United States)

    Gombosi, Tamas I.; DeZeeuw, Darren L.; Haberli, Roman M.; Powell, Kenneth G.

    1996-01-01

    First results of a three-dimensional multiscale MHD model of the interaction of an expanding cometary atmosphere with the magnetized solar wind are presented. The model starts with a supersonic and super-Alfvenic solar wind far upstream of the comet (25 Gm upstream of the nucleus) with arbitrary interplanetary magnetic field orientation. The solar wind is continuously mass loaded with cometary ions originating from a 10-km size nucleus. The effects of photoionization, electron impact ionization, recombination, and ion-neutral frictional drag are taken into account in the model. The governing equations are solved on an adaptively refined unstructured Cartesian grid using our new multiscale upwind scalar conservation laws-type numerical technique (MUSCL). We have named this the multiscale adaptive upwind scheme for MHD (MAUS-MHD). The combination of the adaptive refinement with the MUSCL-scheme allows the entire cometary atmosphere to be modeled, while still resolving both the shock and the diamagnetic cavity of the comet. The main findings are the following: (1) Mass loading decelerates the solar wind flow upstream of the weak cometary shock wave (M approximately equals 2, M(sub A) approximately equals 2), which forms at a subsolar standoff distance of about 0.35 Gm. (2) A cometary plasma cavity is formed at around 3 x 10(exp 3) km from the nucleus. Inside this cavity the plasma expands outward due to the frictional interaction between ions and neutrals. On the nightside this plasma cavity considerably narrows and a relatively fast and dense cometary plasma beam is ejected into the tail. (3) Inside the plasma cavity a teardrop-shaped inner shock is formed, which is terminated by a Mach disk on the nightside. Only the region inside the inner shock is the 'true' diamagnetic cavity. (4) The model predicts four distinct current systems in the inner coma: the density peak current, the cavity boundary current, the inner shock current, and finally the cross-tail current

  17. Three-dimensional echo-planar cine imaging of cerebral blood supply using arterial spin labeling.

    Science.gov (United States)

    Shrestha, Manoj; Mildner, Toralf; Schlumm, Torsten; Robertson, Scott Haile; Möller, Harald

    2016-12-01

    Echo-planar imaging (EPI) with CYlindrical Center-out spatiaL Encoding (EPICYCLE) is introduced as a novel hybrid three-dimensional (3D) EPI technique. Its suitability for the tracking of a short bolus created by pseudo-continuous arterial spin labeling (pCASL) through the cerebral vasculature is demonstrated. EPICYCLE acquires two-dimensional planes of k-space along center-out trajectories. These "spokes" are rotated from shot to shot about a common axis to encode a k-space cylinder. To track a bolus of labeled blood, the same subset of evenly distributed spokes is acquired in a cine fashion after a short period of pCASL. This process is repeated for all subsets to fill the whole 3D k-space of each time frame. The passage of short pCASL boluses through the vasculature of a 3D imaging slab was successfully imaged using EPICYCLE. By choosing suitable sequence parameters, the impact of slab excitation on the bolus shape could be minimized. Parametric maps of signal amplitude, transit time, and bolus width reflected typical features of blood transport in large vessels. The EPICYCLE technique was successfully applied to track a short bolus of labeled arterial blood during its passage through the cerebral vasculature.

  18. Three-Dimensional Modeling of Guide-Field Magnetic Reconnection

    Science.gov (United States)

    Hesse, Michael

    2005-01-01

    The dissipation mechanism of guide field magnetic reconnection remains a subject of intense scientific interest. On one hand, one set of recent studies have shown that particle inertia-based processes, which include thermal and bulk inertial effects, provide the reconnection electric field in the diffusion region. On the other hand, a second set of studies emphasizes the role of wave-particle interactions in providing anomalous resistivity in the diffusion region. In this presentation, we analyze three-dimensional PIC simulations of guide-field magnetic reconnection. Specific emphasis will be on the question whether thermal-inertia processes, mediated by the electron pressure tensor, remain a viable dissipation mechanism in fully three-dimensional systems.

  19. Three dimensional heat transport modeling in Vossoroca reservoir

    Science.gov (United States)

    Arcie Polli, Bruna; Yoshioka Bernardo, Julio Werner; Hilgert, Stephan; Bleninger, Tobias

    2017-04-01

    Freshwater reservoirs are used for many purposes as hydropower generation, water supply and irrigation. In Brazil, according to the National Energy Balance of 2013, hydropower energy corresponds to 70.1% of the Brazilian demand. Superficial waters (which include rivers, lakes and reservoirs) are the most used source for drinking water supply - 56% of the municipalities use superficial waters as a source of water. The last two years have shown that the Brazilian water and electricity supply is highly vulnerable and that improved management is urgently needed. The construction of reservoirs affects physical, chemical and biological characteristics of the water body, e.g. stratification, temperature, residence time and turbulence reduction. Some water quality issues related to reservoirs are eutrophication, greenhouse gas emission to the atmosphere and dissolved oxygen depletion in the hypolimnion. The understanding of the physical processes in the water body is fundamental to reservoir management. Lakes and reservoirs may present a seasonal behavior and stratify due to hydrological and meteorological conditions, and especially its vertical distribution may be related to water quality. Stratification can control heat and dissolved substances transport. It has been also reported the importance of horizontal temperature gradients, e.g. inflows and its density and processes of mass transfer from shallow to deeper regions of the reservoir, that also may impact water quality. Three dimensional modeling of the heat transport in lakes and reservoirs is an important tool to the understanding and management of these systems. It is possible to estimate periods of large vertical temperature gradients, inhibiting vertical transport and horizontal gradients, which could be responsible for horizontal transport of heat and substances (e.g. differential cooling or inflows). Vossoroca reservoir was constructed in 1949 by the impoundment of São João River and is located near to

  20. Overlap distribution of the three-dimensional Ising model.

    Science.gov (United States)

    Berg, Bernd A; Billoire, Alain; Janke, Wolfhard

    2002-10-01

    We study the Parisi overlap probability density P(L)(q) for the three-dimensional Ising ferromagnet by means of Monte Carlo (MC) simulations. At the critical point, P(L)(q) is peaked around q=0 in contrast with the double peaked magnetic probability density. We give particular attention to the tails of the overlap distribution at the critical point, which we control over up to 500 orders of magnitude by using the multioverlap MC algorithm. Below the critical temperature, interface tension estimates from the overlap probability density are given and their approach to the infinite volume limit appears to be smoother than for estimates from the magnetization.

  1. Three-dimensional CT angiography study on the relations between the vertebral artery and atlantoaxial joint

    Institute of Scientific and Technical Information of China (English)

    DUAN Shao-yin; LU Shao-mao; YE Feng; LIN Qing-chi; CHEN Liao-bin

    2009-01-01

    Background The vertebral artery (VA) and atlantoaxial joint (AAJ), with complicated structures, are located in the depths of the head-neck boundary area, the regional anatomy of which cannot be shown globally and directly. This study aims to evaluate three-dimensional CT angiography (3DCTA) in displaying the AAJ, atlantoaxial segment of the vertebral artery (ASVA) and the identification of their interrelations.Methods Sixty-eight subjects without pathology of the ASVA and AAJ were selected from head-neck CTA examination. All the 3D images were formed with volume rendering (VR) together with techniques of separating, fusing, opacifying and false-coloring (SFOF). On the 3D images, the ASVA and AAJ were observed, and their interrelations were measured.Results All the 3DCTA images were of high quality and up to our requirements. They could cleady and directly show the ASVA, ascending along the AAJ. There were 5 curves in the course of the ASVA, of which 2 curves were away from the atlantoaxial joint, one in the 2nd curve of 0.0 mm-5.4 mm, the other in the 4th of 2.6 mm-9.2 mm. There was no significant difference in the measurements between left and dght (P>0.05). The curved parts of the ASVA slightly expanded, with the biggest diameter of 5.6 mm in the 4th curve. Statistical comparison shows that the left ASVA is larger than the right (P<0.05). Variations of the ASVA were found in 8 cases and of the AAJ in 12.Conclusions 3DCTA can globally and directly demonstrate the structures of the AAJ, ASVA and their interrelations. The 3D imaging data make up and enrich the research contents of regional anatomy and lay the foundation for related study and applications.

  2. Three-dimensional reconstruction of coronary arteries and plaque morphology using CT angiography - comparison and registration with IVUS

    NARCIS (Netherlands)

    L.S. Athanasiou (Lambros S.); G. Rigas (George); A.I. Sakellarios (Antonis); T.P. Exarchos (Themis); P.K. Siogkas (Panagiotis); C.V. Bourantas (Christos); H.M. Garcia-Garcia (Hector); P.A. Lemos Neto (Pedro); B.A. Falcao (Breno A.); L.K. Michalis (Lampros); O. Parodi (Oberdan); F. Vozzi (Federico); D.I. Fotiadis (Dimitrios)

    2016-01-01

    textabstractBackground: The aim of this study is to present a new methodology for three-dimensional (3D) reconstruction of coronary arteries and plaque morphology using Computed Tomography Angiography (CTA). Methods: The methodology is summarized in six stages: 1) pre-processing of the initial raw i

  3. Accuracy of three-dimensional, paper-based models generated using a low-cost, three-dimensional printer.

    Science.gov (United States)

    Olszewski, Raphael; Szymor, Piotr; Kozakiewicz, Marcin

    2014-12-01

    Our study aimed to determine the accuracy of a low-cost, paper-based 3D printer by comparing a dry human mandible to its corresponding three-dimensional (3D) model using a 3D measuring arm. One dry human mandible and its corresponding printed model were evaluated. The model was produced using DICOM data from cone beam computed tomography. The data were imported into Maxilim software, wherein automatic segmentation was performed, and the STL file was saved. These data were subsequently analysed, repaired, cut and prepared for printing with netfabb software. These prepared data were used to create a paper-based model of a mandible with an MCor Matrix 300 printer. Seventy-six anatomical landmarks were chosen and measured 20 times on the mandible and the model using a MicroScribe G2X 3D measuring arm. The distances between all the selected landmarks were measured and compared. Only landmarks with a point inaccuracy less than 30% were used in further analyses. The mean absolute difference for the selected 2016 measurements was 0.36 ± 0.29 mm. The mean relative difference was 1.87 ± 3.14%; however, the measurement length significantly influenced the relative difference. The accuracy of the 3D model printed using the paper-based, low-cost 3D Matrix 300 printer was acceptable. The average error was no greater than that measured with other types of 3D printers. The mean relative difference should not be considered the best way to compare studies. The point inaccuracy methodology proposed in this study may be helpful in future studies concerned with evaluating the accuracy of 3D rapid prototyping models. Copyright © 2014 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.

  4. [Sutural physical model building in the three-dimensional finite-element model of maxillofacial bones].

    Science.gov (United States)

    Liu, Chang; Zhu, Xian-chun; Zhang, Xing; Tai, Yin-xia; Yan, Sen

    2011-02-01

    To build the physical model of four suturae which are related to the growth of maxilla in the three-dimensional finite-element model of maxillofacial bones. A 16 years old volunteer with individual normal occlusion, good periodontium health condition and without diseases of temporomandibular joint was chosen to be the material of modeling. The three-dimensional finite-element model of the volunteer's maxillofacial bones was built using the CT scan and the finite-element modeling method. Finally we built the physical model of four suturae which were related to the growth of maxilla in the model of maxillofacial bones. The model of maxillofacial bones with 86,575 nodes and 485,915 elements was generated. This model contained four suturae including sutura frontomaxillaris, sutura zygomaticomaxillaris, sutura temporozygomatica and sutura pterygopalatine. A three-dimensional finite-element model of maxillofacial bones with good biological similarity was developed.

  5. Texture analysis of carotid artery atherosclerosis from three-dimensional ultrasound images.

    Science.gov (United States)

    Awad, Joseph; Krasinski, Adam; Parraga, Grace; Fenster, Aaron

    2010-04-01

    To quantitatively evaluate local carotid arterial statin effects in 3D US images using multiclassifier image texture analysis tools. Texture analysis tools were used to evaluate the effect of 80 mg atorvastatin administered daily to patients with carotid stenosis compared to those treated with placebo. Using three-dimensional carotid ultrasound images, 270 texture features from seven texture techniques were extracted from manually segmented carotid arteries based on the intima-media boundary [vessel wall (VW)]. Individual texture features were compared to the previously determined changes in VW volume (VWV) using the distance between classes, the Wilcoxon rank sum test, and accuracy of the classifiers. Texture features that resulted in maximal classification accuracy from each texture technique were selected using Pudil's sequential floating forward selection (SFFS) as a method of ranking each technique. Finally, SFFS-selected texture features from all texture techniques were used in combination with 24 classifier fusion techniques to improve classification accuracy. Using the measurement of change in VWV, the distance between classes (DBC), Wilcoxon rank sum (WRS) p-value, and median accuracy measures (ACC) were 0.3798, 0.076, and 54.50%, respectively. Texture features improved the detection of statin-related changes using DBC to 0.5199, using WRS to 0.002, and ACC to 63.87%, respectively. The texture techniques that most differentiated between atorvastatin and placebo classes were Fourier power spectrum and Laws texture energy measures. The average classification accuracy between atorvastatin and placebo classes was improved from 57.22 +/- 12.11% using VWV to 97.87 +/- 3.93% using specific texture features. Furthermore, the use of specific texture features resulted in the average area under the receiver-operator characteristic curve (AUC) a value of 0.9988 +/- 0.0069 compared to 0.617 +/- 0.15 using carotid VWV. Based on DBC, WRS, ACC, and AUC texture features

  6. A microfluidically perfused three dimensional human liver model.

    Science.gov (United States)

    Rennert, Knut; Steinborn, Sandra; Gröger, Marko; Ungerböck, Birgit; Jank, Anne-Marie; Ehgartner, Josef; Nietzsche, Sandor; Dinger, Julia; Kiehntopf, Michael; Funke, Harald; Peters, Frank T; Lupp, Amelie; Gärtner, Claudia; Mayr, Torsten; Bauer, Michael; Huber, Otmar; Mosig, Alexander S

    2015-12-01

    Within the liver, non-parenchymal cells (NPCs) are critically involved in the regulation of hepatocyte polarization and maintenance of metabolic function. We here report the establishment of a liver organoid that integrates NPCs in a vascular layer composed of endothelial cells and tissue macrophages and a hepatic layer comprising stellate cells co-cultured with hepatocytes. The three-dimensional liver organoid is embedded in a microfluidically perfused biochip that enables sufficient nutrition supply and resembles morphological aspects of the human liver sinusoid. It utilizes a suspended membrane as a cell substrate mimicking the space of Disse. Luminescence-based sensor spots were integrated into the chip to allow online measurement of cellular oxygen consumption. Application of microfluidic flow induces defined expression of ZO-1, transferrin, ASGPR-1 along with an increased expression of MRP-2 transporter protein within the liver organoids. Moreover, perfusion was accompanied by an increased hepatobiliary secretion of 5(6)-carboxy-2',7'-dichlorofluorescein and an enhanced formation of hepatocyte microvilli. From this we conclude that the perfused liver organoid shares relevant morphological and functional characteristics with the human liver and represents a new in vitro research tool to study human hepatocellular physiology at the cellular level under conditions close to the physiological situation.

  7. Three-dimensional modeling of a patent ductus arteriosus in a cat.

    Science.gov (United States)

    Saunders, A B; Birch, S A

    2015-12-01

    A left-to-right shunting patent ductus arteriosus was diagnosed in a 13-week-old, 2.5 kg, male, domestic Shorthair cat with a continuous murmur. Echocardiographic abnormalities were identified, including: cardiomegaly, wide and presumably short ductal ampulla, and a large right branch pulmonary artery. When these findings were combined with the small patient size, additional imaging was considered prior to surgical ligation, and computed tomography angiography was preferred over standard angiography to provide multi-dimensional appreciation of the anatomy prior to surgery. The dataset from a computed tomography angiographic study performed prior to surgical ligation was used to create a three-dimensional model of the heart and great vessels. The rendered images accurately depicted the cardiac anatomy in situ, which can be utilized for surgical procedural planning and to enhance visuospatial understanding of the anatomy at all levels of training.

  8. Evaluation of the pedal artery: comparison of three-dimensional gadolinium-enhanced MR angiography with digital subtraction angiography

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Jeong Min; Kang, Sung Gwon; Byun, Joo Nam; Kim, Young Cheol; Choi, Jeong Yeol; Kim, Dong Hyun [College of Medicine, Chosun Univ., Kwangju (Korea, Republic of)

    2002-07-01

    To compare the three-dimensional gadolinium-enhanced MR angiography with digital subtraction angiography (DSA) for evaluation of the pedal artery. In 12 extremities of 11 patients, both digital subtraction angiography (DSA) and contrast-enhanced MR angiography (CE-MR angiography) were performed during the same week. Among ten of the 11 patients, the following conditions were present: atherosclerosis (n=4), diabetic foot (n=3), Buerger's disease (n=1), calciphylactic arteriopathy (n=1) and arteriovenous malformation of the foot (n=1). The remaining patient underwent angiography prior to flap surgery. For MR angiography, a 1.5T system using an extremity or head coil was used. A three-dimensional FISP (fast imaging with steady state precession) sequence was obtained before enhancement, followed by four sequential acquisitions (scan time, 20 secs, scan interval time, 10 secs) 10 seconds after intravenous bolus injection of normal saline (total 10 cc), following intravenous administration of gadolinium (0.02 mmol/kg, 3 ml/sec). Arterial segments of the ankle and foot were classified as the anterior or posterior tibial artery, the distal peroneal artery, the medial or lateral plantar artery, the pedal arch, and the dorsalis pedis artery. Two radiologists independently analysed visualization of each arteraial segment and the mean of visible arterial segments in one extreminty using CE-MR angiography and DSA. Among 84 arterial segments, 16 were invisible at both CE-MR angiography and DSA, while 39 were demonstrated by both modalities. Twenty-six segments were visible only at CE-MR angiography and three only at DSA. CE-MR angiography displayed a higher number of arterial segments than DSA (mean, 5.42 vs. mean 3.50, respectively), a difference which was statistically significant (p<0.000). The difference between each arterial segment was not statistically significant, except for the dorsalis pedis artery (t test, p<0.000). In that it provides additional information for

  9. Three-dimensional virtual surgery models for percutaneous coronary intervention (PCI) optimization strategies

    Science.gov (United States)

    Wang, Hujun; Liu, Jinghua; Zheng, Xu; Rong, Xiaohui; Zheng, Xuwei; Peng, Hongyu; Silber-Li, Zhanghua; Li, Mujun; Liu, Liyu

    2015-06-01

    Percutaneous coronary intervention (PCI), especially coronary stent implantation, has been shown to be an effective treatment for coronary artery disease. However, in-stent restenosis is one of the longstanding unsolvable problems following PCI. Although stents implanted inside narrowed vessels recover normal flux of blood flows, they instantaneously change the wall shear stress (WSS) distribution on the vessel surface. Improper stent implantation positions bring high possibilities of restenosis as it enlarges the low WSS regions and subsequently stimulates more epithelial cell outgrowth on vessel walls. To optimize the stent position for lowering the risk of restenosis, we successfully established a digital three-dimensional (3-D) model based on a real clinical coronary artery and analysed the optimal stenting strategies by computational simulation. Via microfabrication and 3-D printing technology, the digital model was also converted into in vitro microfluidic models with 3-D micro channels. Simultaneously, physicians placed real stents inside them; i.e., they performed “virtual surgeries”. The hydrodynamic experimental results showed that the microfluidic models highly inosculated the simulations. Therefore, our study not only demonstrated that the half-cross stenting strategy could maximally reduce restenosis risks but also indicated that 3-D printing combined with clinical image reconstruction is a promising method for future angiocardiopathy research.

  10. Continuum modeling of three-dimensional truss-like space structures

    Science.gov (United States)

    Nayfeh, A. H.; Hefzy, M. S.

    1978-01-01

    A mathematical and computational analysis capability has been developed for calculating the effective mechanical properties of three-dimensional periodic truss-like structures. Two models are studied in detail. The first, called the octetruss model, is a three-dimensional extension of a two-dimensional model, and the second is a cubic model. Symmetry considerations are employed as a first step to show that the specific octetruss model has four independent constants and that the cubic model has two. The actual values of these constants are determined by averaging the contributions of each rod element to the overall structure stiffness. The individual rod member contribution to the overall stiffness is obtained by a three-dimensional coordinate transformation. The analysis shows that the effective three-dimensional elastic properties of both models are relatively close to each other.

  11. Development of the human aortic arch system captured in an interactive three-dimensional reference model.

    Science.gov (United States)

    Rana, M Sameer; Sizarov, Aleksander; Christoffels, Vincent M; Moorman, Antoon F M

    2014-06-01

    Variations and mutations in the human genome, such as 22q11.2 microdeletion, can increase the risk for congenital defects, including aortic arch malformations. Animal models are increasingly expanding our molecular and genetic insights into aortic arch development. However, in order to justify animal-to-human extrapolations, a human morphological, and molecular reference model would be of great value, but is currently lacking. Here, we present interactive three-dimensional reconstructions of the developing human aortic arch system, supplemented with the protein distribution of developmental markers for patterning and growth, including T-box transcription factor TBX1, a major candidate for the phenotypes found in patients with the 22q11.2 microdeletion. These reconstructions and expression data facilitate unbiased interpretations, and reveal previously unappreciated aspects of human aortic arch development. Based on our reconstructions and on reported congenital anomalies of the pulmonary trunk and tributaries, we postulate that the pulmonary arteries originate from the aortic sac, rather than from the sixth pharyngeal arch arteries. Similar to mouse, TBX1 is expressed in pharyngeal mesenchyme and epithelia. The endothelium of the pharyngeal arch arteries is largely negative for TBX1 and family member TBX2 but expresses neural crest marker AP2α, which gradually decreases with ongoing development of vascular smooth muscle. At early stages, the pharyngeal arch arteries, aortic sac, and the dorsal aortae in particular were largely negative for proliferation marker Ki67, potentially an important parameter during aortic arch system remodeling. Together, our data support current animal-to-human extrapolations and future genetic and molecular analyses using animal models of congenital heart disease. © 2013 Wiley Periodicals, Inc.

  12. Design and Fabrication of a Three-Dimensional In Vitro System for Modeling Vascular Stenosis.

    Science.gov (United States)

    Jones, Rebecca S; Chang, Pin H; Perahia, Tzlil; Harmon, Katrina A; Junor, Lorain; Yost, Michael J; Fan, Daping; Eberth, John F; Goodwin, Richard L

    2017-08-01

    Vascular stenosis, the abnormal narrowing of blood vessels, arises from defective developmental processes or atherosclerosis-related adult pathologies. Stenosis triggers a series of adaptive cellular responses that induces adverse remodeling, which can progress to partial or complete vessel occlusion with numerous fatal outcomes. Despite its severity, the cellular interactions and biophysical cues that regulate this pathological progression are poorly understood. Here, we report the design and fabrication of a three-dimensional (3D) in vitro system to model vascular stenosis so that specific cellular interactions and responses to hemodynamic stimuli can be investigated. Tubular cellularized constructs (cytotubes) were produced, using a collagen casting system, to generate a stenotic arterial model. Fabrication methods were developed to create cytotubes containing co-cultured vascular cells, where cell viability, distribution, morphology, and contraction were examined. Fibroblasts, bone marrow primary cells, smooth muscle cells (SMCs), and endothelial cells (ECs) remained viable during culture and developed location- and time-dependent morphologies. We found cytotube contraction to depend on cellular composition, where SMC-EC co-cultures adopted intermediate contractile phenotypes between SMC- and EC-only cytotubes. Our fabrication approach and the resulting artery model can serve as an in vitro 3D culture system to investigate vascular pathogenesis and promote the tissue engineering field.

  13. Three-Dimensional Electro-Thermal Verilog-A Model of Power MOSFET for Circuit Simulation

    Science.gov (United States)

    Chvála, A.; Donoval, D.; Marek, J.; Príbytný, P.; Molnár, M.; Mikolášek, M.

    2014-04-01

    New original circuit model for the power device based on interactive coupling of electrical and thermal properties is described. The thermal equivalent network for a three-dimensional heat flow is presented. Designed electro-thermal MOSFET model for circuit simulations with distributed properties and three-dimensional thermal equivalent network is used for simulation of multipulse unclamped inductive switching (UIS) test of device robustness. The features and the limitations of the new model are analyzed and presented.

  14. Three dimensional mathematical model of tooth for finite element analysis

    Directory of Open Access Journals (Sweden)

    Puškar Tatjana

    2010-01-01

    Full Text Available Introduction. The mathematical model of the abutment tooth is the starting point of the finite element analysis of stress and deformation of dental structures. The simplest and easiest way is to form a model according to the literature data of dimensions and morphological characteristics of teeth. Our method is based on forming 3D models using standard geometrical forms (objects in programmes for solid modeling. Objective. Forming the mathematical model of abutment of the second upper premolar for finite element analysis of stress and deformation of dental structures. Methods. The abutment tooth has a form of a complex geometric object. It is suitable for modeling in programs for solid modeling SolidWorks. After analyzing the literature data about the morphological characteristics of teeth, we started the modeling dividing the tooth (complex geometric body into simple geometric bodies (cylinder, cone, pyramid,.... Connecting simple geometric bodies together or substricting bodies from the basic body, we formed complex geometric body, tooth. The model is then transferred into Abaqus, a computational programme for finite element analysis. Transferring the data was done by standard file format for transferring 3D models ACIS SAT. Results. Using the programme for solid modeling SolidWorks, we developed three models of abutment of the second maxillary premolar: the model of the intact abutment, the model of the endodontically treated tooth with two remaining cavity walls and the model of the endodontically treated tooth with two remaining walls and inserted post. Conclusion Mathematical models of the abutment made according to the literature data are very similar with the real abutment and the simplifications are minimal. These models enable calculations of stress and deformation of the dental structures. The finite element analysis provides useful information in understanding biomechanical problems and gives guidance for clinical research.

  15. [Three dimensional mathematical model of tooth for finite element analysis].

    Science.gov (United States)

    Puskar, Tatjana; Vasiljević, Darko; Marković, Dubravka; Jevremović, Danimir; Pantelić, Dejan; Savić-Sević, Svetlana; Murić, Branka

    2010-01-01

    The mathematical model of the abutment tooth is the starting point of the finite element analysis of stress and deformation of dental structures. The simplest and easiest way is to form a model according to the literature data of dimensions and morphological characteristics of teeth. Our method is based on forming 3D models using standard geometrical forms (objects) in programmes for solid modeling. Forming the mathematical model of abutment of the second upper premolar for finite element analysis of stress and deformation of dental structures. The abutment tooth has a form of a complex geometric object. It is suitable for modeling in programs for solid modeling SolidWorks. After analysing the literature data about the morphological characteristics of teeth, we started the modeling dividing the tooth (complex geometric body) into simple geometric bodies (cylinder, cone, pyramid,...). Connecting simple geometric bodies together or substricting bodies from the basic body, we formed complex geometric body, tooth. The model is then transferred into Abaqus, a computational programme for finite element analysis. Transferring the data was done by standard file format for transferring 3D models ACIS SAT. Using the programme for solid modeling SolidWorks, we developed three models of abutment of the second maxillary premolar: the model of the intact abutment, the model of the endodontically treated tooth with two remaining cavity walls and the model of the endodontically treated tooth with two remaining walls and inserted post. Mathematical models of the abutment made according to the literature data are very similar with the real abutment and the simplifications are minimal. These models enable calculations of stress and deformation of the dental structures. The finite element analysis provides useful information in understanding biomechanical problems and gives guidance for clinical research.

  16. The First Three Dimensional Digital Models of Shatter Cones

    Science.gov (United States)

    Baratoux, D.; Bouley, S.; Reimold, W. U.; Baratoux, L.

    2014-09-01

    Shatter cones are used as a diagnostic evidence for impact, but model of formation is unclear. Geometrical parameters may offer critical tests. The first 3-D models of 30 shatter cones from 16 different impact structures are reported here.

  17. Three dimensional model for surgical planning in resection of thoracic tumors

    Directory of Open Access Journals (Sweden)

    Min P. Kim

    2015-01-01

    Conclusion: Three-dimensional printed model provide better visualization of complex thoracic tumors, aid in counseling the patient about the surgical procedure and assisted in surgical resection of thoracic malignancy.

  18. Digital three-dimensional models of Drosophila development.

    Science.gov (United States)

    Pereanu, Wayne; Hartenstein, Volker

    2004-08-01

    Digital models of organs, cells and subcellular structures have become important tools in biological and medical research. Reaching far beyond their traditional widespread use as didactic tools, computer-generated models serve as electronic atlases to identify specific elements in complex patterns, and as analytical tools that reveal relationships between such pattern elements that would remain obscure in two-dimensional sections. Digital models also offer the unique opportunity to store and display gene-expression patterns, and pilot studies have been made in several genetic model organisms, including mouse, Drosophila and Caenorhabditis elegans, to construct digital graphic databases intended as repositories for gene-expression data.

  19. On three-dimensional geological modeling and visualization

    Institute of Scientific and Technical Information of China (English)

    WU; Qiang; XU; Hua

    2004-01-01

    The technology of 3D geological modeling will bring about great changes in the methods of geological data acquiring, storing, processing and displaying. However, no perfect or convenient software systems have been developed up to now since the geologic data which reflect geological entities bear the feature of diversity, uncertainty and complexity. Some supervoxel models, mathematical models of fault and geometrical models of fold have been contrived so as to show the space geometric configuration of the complicated geologic structures.The application-oriented system architecture for 3D geological modeling is established; and a novel design concept based on spatial data processing is also proposed with the technology of solid modeling as its core and the application of models as its objective. Theories and methods for 3D geological modeling will hopefully be enriched and developed. In the light of these theories and methods, a feature-based navigation visualization technique is also put forward in the paper.By integrating geo-database, graphics libraries and KBS with 3D dynamic simulation systems,geologists will be able to capture the partial characteristics and whole structure embodied in the geological data in a direct-viewing, figurative and accurate manner.

  20. Development of a Three-Dimensional Hand Model Using Three-Dimensional Stereophotogrammetry: Assessment of Image Reproducibility.

    Directory of Open Access Journals (Sweden)

    Inge A Hoevenaren

    Full Text Available Using three-dimensional (3D stereophotogrammetry precise images and reconstructions of the human body can be produced. Over the last few years, this technique is mainly being developed in the field of maxillofacial reconstructive surgery, creating fusion images with computed tomography (CT data for precise planning and prediction of treatment outcome. Though, in hand surgery 3D stereophotogrammetry is not yet being used in clinical settings.A total of 34 three-dimensional hand photographs were analyzed to investigate the reproducibility. For every individual, 3D photographs were captured at two different time points (baseline T0 and one week later T1. Using two different registration methods, the reproducibility of the methods was analyzed. Furthermore, the differences between 3D photos of men and women were compared in a distance map as a first clinical pilot testing our registration method.The absolute mean registration error for the complete hand was 1.46 mm. This reduced to an error of 0.56 mm isolating the region to the palm of the hand. When comparing hands of both sexes, it was seen that the male hand was larger (broader base and longer fingers than the female hand.This study shows that 3D stereophotogrammetry can produce reproducible images of the hand without harmful side effects for the patient, so proving to be a reliable method for soft tissue analysis. Its potential use in everyday practice of hand surgery needs to be further explored.

  1. Three-Dimensional Modeling of Glass Lens Molding

    DEFF Research Database (Denmark)

    Sarhadi, Ali; Hattel, Jesper Henri; Hansen, Hans Nørgaard

    2015-01-01

    The required accuracy for the final dimensions of the molded lenses in wafer-based precision glass molding as well as the need for elimination of costly experimental trial and error calls for numerical simulations. This study deals with 3D thermo-mechanical modeling of the wafer-based precision...... glass lens molding process. First, a comprehensive 3D thermo-mechanical model of glass is implemented into a FORTRAN user subroutine (UMAT) in the FE program ABAQUS, and the developed FE model is validated with both a well-known sandwich seal test and experimental results of precision molding of several...... glass rings. Afterward, 3D thermo-mechanical modeling of the wafer-based glass lens manufacturing is performed to suggest a proper molding program (i.e., the proper set of process parameters including preset force-time and temperature-time histories) for molding a wafer to a desired dimension...

  2. Three-dimensional effects for radio frequency antenna modeling

    Energy Technology Data Exchange (ETDEWEB)

    Carter, M.D.; Batchelor, D.B.; Stallings, D.C.

    1993-09-01

    Electromagnetic field calculations for radio frequency (rf) antennas in two dimensions (2-D) neglect finite antenna length effects as well as the feeders leading to the main current strap. Comparisons with experiments indicate that these 2-D calculations can overestimate the loading of the antenna and fail to give the correct reactive behavior. To study the validity of the 2-D approximation, the Multiple Antenna Implementation System (MAntIS) has been used to perform 3-D modeling of the power spectrum, plasma loading, and inductance for a relevant loop antenna design. Effects on antenna performance caused by feeders to the main current strap, conducting sidewalls, and finite phase velocity are considered. The plasma impedance matrix for the loading calculation is generated by use of the ORION-1D code. The 3-D model is benchmarked with the 2-D model in the 2-D limit. For finite-length antennas, inductance calculations are found to be in much more reasonable agreement with experiments for 3-D modeling than for the 2-D estimates. The modeling shows that the feeders affect the launched power spectrum in an indirect way by forcing the driven rf current to return in the antenna sidewalls rather than in the plasma as in the 2-D model. Thus, the feeders have much more influence than the plasma on the currents that return in the sidewall. It has also been found that poloidal dependencies in the plasma impedance matrix can reduce the loading from that predicted in the 2-D model. For some plasma parameters, the combined 3-D effects can lead to a reduction in the predicted loading by as much as a factor of 2 from that given by the 2-D model.

  3. Preliminary results of a three-dimensional radiative transfer model

    Energy Technology Data Exchange (ETDEWEB)

    O`Hirok, W. [Univ. of California, Santa Barbara, CA (United States)

    1995-09-01

    Clouds act as the primary modulator of the Earth`s radiation at the top of the atmosphere, within the atmospheric column, and at the Earth`s surface. They interact with both shortwave and longwave radiation, but it is primarily in the case of shortwave where most of the uncertainty lies because of the difficulties in treating scattered solar radiation. To understand cloud-radiative interactions, radiative transfer models portray clouds as plane-parallel homogeneous entities to ease the computational physics. Unfortunately, clouds are far from being homogeneous, and large differences between measurement and theory point to a stronger need to understand and model cloud macrophysical properties. In an attempt to better comprehend the role of cloud morphology on the 3-dimensional radiation field, a Monte Carlo model has been developed. This model can simulate broadband shortwave radiation fluxes while incorporating all of the major atmospheric constituents. The model is used to investigate the cloud absorption anomaly where cloud absorption measurements exceed theoretical estimates and to examine the efficacy of ERBE measurements and cloud field experiments. 3 figs.

  4. THREE-DIMENSIONAL VARIABLES ALLOCATION IN MESOSCALE MODELS

    Institute of Scientific and Technical Information of China (English)

    刘宇迪; 陆汉城

    2004-01-01

    Forecasts and simulations are varied owing to different allocation of 3-dimensional variables in mesoscale models. No attempts have been made to address the issue of optimizing the simulation with a 3-dimensional variables distribution that should come to be. On the basis of linear nonhydrostatic anelastic equations, the paper hereby compares, mainly graphically, the computational dispersion with analytical solutions for four kinds of 3-dimensional meshes commonly found in mesoscale models, in terms of frequency, horizontal and vertical group velocities. The result indicates that the 3-D mesh C/CP has the best computational dispersion, followed by Z/LZ and Z/LY, with the C/L having the worst performance. It is then known that the C/CP mesh is the most desirable allocation in the design of nonhydrostatic baroclinic models. The mesh has, however, larger errors when dealing with shorter horizontal wavelengths. For the simulation of smaller horizontal scales, the horizontal grid intervals have to be shortened to reduce the errors. Additionally, in view of the dominant use of C/CP mesh in finite-difference models, it should be used in conjunction with the Z/LZ or Z/LY mesh if variables are allocated in spectral models.

  5. Three-dimensional environment models from airborne laser radar data

    Science.gov (United States)

    Soderman, Ulf; Ahlberg, Simon; Elmqvist, Magnus; Persson, Asa

    2004-09-01

    Detailed 3D environment models for visualization and computer based analyses are important in many defence and homeland security applications, e.g. crisis management, mission planning and rehearsal, damage assessment, etc. The high resolution data from airborne laser radar systems for 3D sensing provide an excellent source of data for obtaining the information needed for many of these models. To utilise the 3D data provided by the laser radar systems however, efficient methods for data processing and environment model construction needs to be developed. In this paper we will present some results on the development of laser data processing methods, including methods for data classification, bare earth extraction, 3D-reconstruction of buildings, and identification of single trees and estimation of their position, height, canopy size and species. We will also show how the results can be used for the construction of detailed 3D environment models for military modelling and simulation applications. The methods use data from discrete return airborne laser radar systems and digital cameras.

  6. Three-Dimensional Gravity Model Applied to Underwater Navigation

    Institute of Scientific and Technical Information of China (English)

    YAN Lei; FENG Hao; DENG Zhongliang; GAO Zhengbing

    2004-01-01

    At present, new integrated navigation, which usesthe location function of reference gravity anomaly map to control the errors of the inertial navigation system (INS), has been developed in marine navigation. It is named the gravityaided INS. Both the INS and real-time computation of gravity anomalies need a 3-D marine normal gravity model.Conventionally, a reduction method applied in geophysical survey is directly introduced to observed data processing. This reduction does not separate anomaly from normal gravity in the observed data, so errors cannot be avoided. The 3-D marine normal gravity model was derived from the J2 gravity model, and is suitable for the region whose depth is less than 1000 m.

  7. Three-dimensional bioremediation modeling in heterogeneous porous media

    Energy Technology Data Exchange (ETDEWEB)

    Wheeler, M.F. [Rice Univ., Houston, TX (United States). Dept. of Mathematical Sciences; Roberson, K.R. [Pacific Northwest Lab., Richland, WA (United States); Chilakapati, A. [Rice Univ., Houston, TX (United States). Dept. of Chemical Engineering

    1992-06-01

    Recently Price University and Pacific Northwest Laboratory (PNL) have begun a collaborative research effort that involves laboratory, field, and simulation work directed toward validating remediation strategies, including both natural and in situ bioremediation at US Department of Energy (DOE) sites such as Hanford. Because of chemical, biological, geologic and physical complexities of modeling these DOE sites, one of the major simulation goals of the project is to formulate and implement accurate and efficient (parallel) algorithms for modeling multiphase/multicomponent mow and reactive transport. In this paper we first describe the physical problem that needs to be modeled. Because of the emergence of concurrent supercomputing, we propose accurate numerical algorithms that are based on operator-splitting in time and domain decomposition iterative techniques. In particular reference is made to the biodegradation of carbon tetrachloride.

  8. SARC Model for Three-Dimensional Coordinate Transformation

    Institute of Scientific and Technical Information of China (English)

    YAO Jili; WANG Shuguang; SUN Yating

    2006-01-01

    In this paper, a transformation model named SARC(static-filter adjustment with restricted condition) is presented, which is more practical and more rigorous in theory and fitting any angle of rotation parameter. The transformation procedure is divided into 4 steps: ① the original and object coordinates can be regarded as observations with errors; ② rigorous formula is firstly deduced in order to compute the first approximation of the transformation parameters by use of four common points and the transformation equation is linearized; ③ calculate the most probable values and variances of the seven transformation parameters by SARC model; ④ to demonstrate validity of SARC , an example is given.

  9. Three-dimensional surface model analysis in the gastrointestinal tract

    Institute of Scientific and Technical Information of China (English)

    Donghua Liao; Jens B Fr(φ)kj(ae)r; Jian Yang; Jingbo Zhao; Asbj(φ)rn M Drewes; Odd H Gilja; Hans Gregersen

    2006-01-01

    The biomechanical changes during functional loading and unloading of the human gastrointestinal (GI) tract are not fully understood. GI function is usually studied by introducing probes in the GI lumen. Computer modeling offers a promising alternative approach in this regard, with the additional ability to predict regional stresses and strains in inaccessible locations. The tension and stress distributions in the GI tract are related to distensibility (tension-strain relationship) and smooth muscle tone. More knowledge on the tension and stress on the GI tract are needed to improve diagnosis of patients with gastrointestinal disorders. A modeling framework that can be used to integrate the physiological,anatomical and medical knowledge of the GI system has recently been developed. The 3-D anatomical model was constructed from digital images using ultrasonography,computer tomography (CT) or magnetic resonance imaging (MRI). Different mathematical algorithms were developed for surface analysis based on thin-walled structure and the finite element method was applied for the mucosa-folded three layered esophageal model analysis.The tools may be useful for studying the geometry and biomechanical properties of these organs in health and disease. These studies will serve to test the structurefunction hypothesis of geometrically complex organs.

  10. The Acceptance of Exceptionality: A Three Dimensional Model.

    Science.gov (United States)

    Martin, Larry L.; Nivens, Maryruth K.

    A model extrapolates from E. Kubler-Ross' conception of the stages of grief to apply to parent and family reactions when an exceptionality is identified. A chart lists possible parent feelings and reactions, possible school reactions to the parent in grief, and the child's reactions during each of five stages: denial, rage and anger, bargaining,…

  11. Three-dimensional Microstructure Simulation Model of Cement Based Materials,

    NARCIS (Netherlands)

    Ye, G.; Van Breugel, K.

    2003-01-01

    This paper describes a computer-based numerical model for the simulation of the development of microstructure during cement hydration. Special emphasis is on the algorithm for characterizing the pores. This includes the porosity and the pore size distribution and the topological properties of the po

  12. Patient-Specific Simulation of Coronary Artery Pressure Measurements: An In Vivo Three-Dimensional Validation Study in Humans

    Directory of Open Access Journals (Sweden)

    Panagiotis K. Siogkas

    2015-01-01

    Full Text Available Pressure measurements using finite element computations without the need of a wire could be valuable in clinical practice. Our aim was to compare the computed distal coronary pressure values with the measured values using a pressure wire, while testing the effect of different boundary conditions for the simulation. Eight coronary arteries (lumen and outer vessel wall from six patients were reconstructed in three-dimensional (3D space using intravascular ultrasound and biplane angiographic images. Pressure values at the distal and proximal end of the vessel and flow velocity values at the distal end were acquired with the use of a combo pressure-flow wire. The 3D lumen and wall models were discretized into finite elements; fluid structure interaction (FSI and rigid wall simulations were performed for one cardiac cycle both with pulsatile and steady flow in separate simulations. The results showed a high correlation between the measured and the computed coronary pressure values (coefficient of determination [r2] ranging between 0.8902 and 0.9961, while the less demanding simulations using steady flow and rigid walls resulted in very small relative error. Our study demonstrates that computational assessment of coronary pressure is feasible and seems to be accurate compared to the wire-based measurements.

  13. A three dimensional MHD model of the earth's magnetosphere

    Science.gov (United States)

    Wu, C. C.; Walker, R. J.; Dawson, J. M.

    1981-01-01

    The results of a global MHD calculation of the steady state solar wind interaction with a dipole magnetic field are presented. The computer code used, being much faster than previous codes, makes it possible to increase the number of grid points in the system by an order of magnitude. The resulting model qualitatively reproduces many of the observed features of the quiet time magnetosphere including the bow shock, magnetopause, and plasma sheet.

  14. Unusual hemodynamic stroke related to an accessory middle cerebral artery: The usefulness of fusion images from three-dimensional angiography

    Directory of Open Access Journals (Sweden)

    Kei Noguchi

    2014-01-01

    Full Text Available Background: Ischemic stroke associated with an anomaly of the middle cerebral artery (MCA is a rare occurrence. The diagnosis is very difficult when there are steno-occlusive lesions associated with an accessory middle cerebral artery (AMCA. Case Description: A 77-year-old female with hypertension and hyperlipidemia experienced repeated transient ischemic attacks (TIAs of motor aphasia and dysarthria. Although angiography showed only left intracranial occlusion, the fusion images of three-dimensional digital subtraction angiography (3-D DSA showed complex steno-occlusive lesions and an AMCA related with the TIA. The cerebral blood flow (CBF to the left frontal lobe was supplied by the AMCA, via the anterior communicating artery from the right internal carotid artery. The left temporal and parietal lobes were supplied by the stenotic MCA, via the left posterior communicating artery from the left posterior cerebral artery. Single-photon emission computed tomography showed a marked decrease in CBF to both the left frontal and temporal lobes. A left superficial temporal artery (STA-to-left MCA double anastomosis was performed, in which each branch of the STA supplied branches of the AMCA and MCA. Conclusion: This is the first reported case of ischemic stroke in a patient with an AMCA. The exact diagnosis could be made only by using fusion images of 3-D DSA, which were useful for understanding the complicated CBF pattern and for the choice of recipient artery in bypass surgery.

  15. Probabilistic Three-Dimensional Model of an offshore Monopile Foundation

    DEFF Research Database (Denmark)

    Vahdatirad, Mohammad Javad; Andersen, Lars Vabbersgaard; Ibsen, Lars Bo

    2013-01-01

    shear strength of the soil. Typically, measurement, statistical and model uncertainties are not taken into account in code - based, deterministic design. Hence, current methodology based design may be expensive, but the reliability of the foundation is unknown. Instead, a reliability - based design...... process based on stochastic analysis of the soil parameters is proposed to obtain an efficient design with known reliability and smaller costs for tests and construction. In this study a monopile foundation in undrained, over -consolidated clay is considered as an example. A three –dimensional (3D) finite...

  16. Computer modeling of a three-dimensional steam injection experiment

    Energy Technology Data Exchange (ETDEWEB)

    Joshi, S.; Castanier, L.M. [Stanford Univ., CA (United States). Petroleum Research Inst.

    1993-08-01

    The experimental results and CT scans obtained during a steam-flooding experiment with the SUPRI 3-D steam injection laboratory model are compared with the results obtained from a numerical simulator for the same experiment. Simulation studies were carried out using the STARS (Steam and Additives Reservoir Simulator) compositional simulator. The saturation and temperature distributions obtained and heat-loss rates measured in the experimental model at different stages of steam-flooding were compared with those calculated from the numerical simulator. There is a fairly good agreement between the experimental results and the simulator output. However, the experimental scans show a greater degree of gravity override than that obtained with the simulator for the same heat-loss rates. Symmetric sides of the experimental 5-spot show asymmetric heat-loss rates contrary to theory and simulator results. Some utility programs have been written for extracting, processing and outputting the required grid data from the STARS simulator. These are general in nature and can be useful for other STARS users.

  17. Sustainable three-dimensional tissue model of human adipose tissue.

    Science.gov (United States)

    Bellas, Evangelia; Marra, Kacey G; Kaplan, David L

    2013-10-01

    The need for physiologically relevant sustainable human adipose tissue models is crucial for understanding tissue development, disease progression, in vitro drug development and soft tissue regeneration. The coculture of adipocytes differentiated from human adipose-derived stem cells, with endothelial cells, on porous silk protein matrices for at least 6 months is reported, while maintaining adipose-like outcomes. Cultures were assessed for structure and morphology (Oil Red O content and CD31 expression), metabolic functions (leptin, glycerol production, gene expression for GLUT4, and PPARγ) and cell replication (DNA content). The cocultures maintained size and shape over this extended period in static cultures, while increasing in diameter by 12.5% in spinner flask culture. Spinner flask cultures yielded improved adipose tissue outcomes overall, based on structure and function, when compared to the static cultures. This work establishes a tissue model system that can be applied to the development of chronic metabolic dysfunction systems associated with human adipose tissue, such as obesity and diabetes, due to the long term sustainable functions demonstrated here.

  18. Three-dimensional modeling of radiative disks in binaries

    CERN Document Server

    Picogna, Giovanni

    2013-01-01

    Circumstellar disks in binaries are perturbed by the companion gravity causing significant alterations of the disk morphology. Spiral waves due to the companion tidal force also develop in the vertical direction and affect the disk temperature profile. These effects may significantly influence the process of planet formation. We perform 3D numerical simulations of disks in binaries with different initial dynamical configurations and physical parameters. Our goal is to investigate their evolution and their propensity to grow planets. We use an improved version of the SPH code VINE modified to better account for momentum and energy conservation. The energy equation includes a flux--limited radiative transfer algorithm and the disk cooling is obtained via "boundary particles". We model a system made of star/disk + star/disk where the secondary star (and relative disk) is less massive than the primary. The numerical simulations performed for different values of binary separation and disk density show that the dis...

  19. Follow-up of true visceral artery aneurysm after coil embolization by three-dimensional contrast-enhanced MR angiography.

    Science.gov (United States)

    Koganemaru, Masamichi; Abe, Toshi; Nonoshita, Masaaki; Iwamoto, Ryoji; Kusumoto, Masashi; Kuhara, Asako; Kugiyama, Tomoko

    2014-01-01

    We aimed to evaluate the outcomes of coil embolization of true visceral artery aneurysms by three-dimensional contrast-enhanced magnetic resonance (MR) angiography. We used three-dimensional contrast-enhanced MR angiography, which included source images, to evaluate 23 patients (mean age, 60 years; range, 28-83 years) with true visceral artery aneurysms (splenic, n=15; hepatic, n=2; gastroduodenal, n=2; celiac, n=2; pancreaticoduodenal, n=1; gastroepiploic, n=1) who underwent coil embolization. Angiographic aneurysmal occlusion was revealed in all cases. Follow-up MR angiography was conducted with either a 1.5 or 3 Tesla system 3-25 months (mean, 18 months) after embolization. MR angiography was evaluated for aneurysmal occlusion, hemodynamic status, and complications. Complete aneurysmal occlusion was determined in 22 patients (96%) on follow-up MR angiography (mean follow-up period, 18 months). Neck recanalization, which was observed at nine and 20 months after embolization, was confirmed in one of eight patients (13%) using a neck preservation technique. In this patient, a small neck recanalization covered by a coil mass was demonstrated. The complete hemodynamic status after embolization was determined in 21 patients (91%); the visualization of several collateral vessels, such as short gastric arteries, after parent artery occlusion was poor compared with that seen on digital subtraction angiography in the remaining two patients (9%). An asymptomatic localized splenic infarction was confirmed in one patient (4%). Our study presents the follow-up results from three-dimensional contrast-enhanced MR angiography, which confirmed neck recanalization, the approximate hemodynamic status, and complications. This effective and less invasive method may be suitable for serial follow-up after coil embolization of true visceral aneurysms.

  20. Three dimensional modeling of fractures in rock: From data to a regionalized parent-daughter model

    Energy Technology Data Exchange (ETDEWEB)

    Hestir, K.; Chiles, J.P.; Long, J.; Billaux, D.

    1987-04-01

    We introduce a stochastic model for fracture systems called the parent-daughter model. The model uses circular discs to represent fractures. The discs are placed in three-dimensional space according to a random process called the parent-daughter point process. This process will give a clustering of fractures that cannot be produced with the usual Poisson process. We then outline a procedure for fitting the model to a particular data set.

  1. Three-dimensional bending, torsion and axial compression of the femoropopliteal artery during limb flexion.

    Science.gov (United States)

    MacTaggart, Jason N; Phillips, Nicholas Y; Lomneth, Carol S; Pipinos, Iraklis I; Bowen, Robert; Baxter, B Timothy; Johanning, Jason; Longo, G Matthew; Desyatova, Anastasia S; Moulton, Michael J; Dzenis, Yuris A; Kamenskiy, Alexey V

    2014-07-18

    High failure rates of femoropopliteal artery reconstruction are commonly attributed to complex 3D arterial deformations that occur with limb movement. The purpose of this study was to develop a method for accurate assessment of these deformations. Custom-made stainless-steel markers were deployed into 5 in situ cadaveric femoropopliteal arteries using fluoroscopy. Thin-section CT images were acquired with each limb in the straight and acutely bent states. Image segmentation and 3D reconstruction allowed comparison of the relative locations of each intra-arterial marker position for determination of the artery's bending, torsion and axial compression. After imaging, each artery was excised for histological analysis using Verhoeff-Van Gieson staining. Femoropopliteal arteries deformed non-uniformly with highly localized deformations in the proximal superficial femoral artery, and between the adductor hiatus and distal popliteal artery. The largest bending (11±3-6±1 mm radius of curvature), twisting (28±9-77±27°/cm) and axial compression (19±10-30±8%) were registered at the adductor hiatus and the below knee popliteal artery. These deformations were 3.7, 19 and 2.5 fold more severe than values currently reported in the literature. Histology demonstrated a distinct sub-adventitial layer of longitudinally oriented elastin fibers with intimal thickening in the segments with the largest deformations. This endovascular intra-arterial marker technique can quantify the non-uniform 3D deformations of the femoropopliteal artery during knee flexion without disturbing surrounding structures. We demonstrate that 3D arterial bending, torsion and compression in the flexed lower limb are highly localized and are substantially more severe than previously reported.

  2. 不同重建阈值构建宫颈癌动脉血管网数字化三维模型对癌灶血供分析的影响%The influence to reconstruct the digital three-dimensional model and analysis the characteristic of blood supply of arteries network in cervical cancer by different threshold

    Institute of Scientific and Technical Information of China (English)

    陆琳; 王建平; 唐雷; 钟世镇; 段慧; 陈春林; 刘萍; 王黎; 陈兰; 王俊; 李维丽; 陈瑞莹

    2014-01-01

    目的:拟比较不同重建阈值的在体宫颈癌动脉血管网数字化三维模型的血供比例,评估模型的应用价值。方法通过采集2010年4月至2012年12月于南方医科大学南方医院妇科住院的36例宫颈癌患者的CTA数据集,导入三维重建软件后分别设定重建阈值为80 HU、100 HU和120 HU后利用Mimics软件构建在体宫颈癌动脉血管网数字化三维模型;利用线切割及面切割工具对三维模型进行立体切割,并计算子宫及子宫各部分的血管容积及血供比例,比较三种不同重建阈值所构建的在体宫颈癌动脉血管网数字化三维模型的血供特点。结果(1)通过Mimics软件计算得出,子宫总体血管容积、宫体血管容积、宫颈血管容积,宫体左/右侧部血管容积、宫颈左/右侧部血管容积随重建阈值降低而增加,差异具有统计学意义(P0.05)。结论宫颈癌动脉血管网数字化三维模型中子宫各部分血供比例不受重建阈值的变化而变化,能更客观准确的反映宫颈癌的动脉血供特点,为后续临床应用提供了稳定的模型基础。%Objective Intends to compare the proportion of the blood supply of uterine arteries digital three-dimensional model of cervical cancer reconstructed by different threshold, and assess the applicative value of the models. Method The 36 CTA datasets of patients with cervical cancer were obtained from April 2010 to December 2012. All the patients were from the department of Obstetrics and Gynecology in Nanfang Hospital of Southern medical university. The uterine arteries digital three-dimensional models of cervical cancer were built on different reconstructive threshold such as 80 Hu, 100 Hu and 120 HU by Mimics software. Then the models were cut into different parts of uterus by using the line cutting and surface cutting tools, and the vascular volume and the proportion of blood supply were calculated to compare the

  3. Development of a three dimensional circulation model based on fractional step method

    Science.gov (United States)

    Abualtayef, Mazen; Kuroiwa, Masamitsu; Seif, Ahmed Khaled; Matsubara, Yuhei; Aly, Ahmed M.; Sayed, Ahmed A.; Sambe, Alioune Nar

    2010-03-01

    A numerical model was developed for simulating a three-dimensional multilayer hydrodynamic and thermodynamic model in domains with irregular bottom topography. The model was designed for examining the interactions between flow and topography. The model was based on the three-dimensional Navier-Stokes equations and was solved using the fractional step method, which combines the finite difference method in the horizontal plane and the finite element method in the vertical plane. The numerical techniques were described and the model test and application were presented. For the model application to the northern part of Ariake Sea, the hydrodynamic.

  4. Three-dimensional computed tomography angiography for the investigation of superficial temporal artery pseudoaneurysms--two case reports--.

    Science.gov (United States)

    Higashino, Takuya; Kawashima, Masatou; Mannoji, Hiromichi

    2005-03-01

    An 89-year-old man and a 60-year-old man presented with superficial temporal artery (STA) pseudoaneurysms which developed secondary to trauma. Conventional cerebral angiography and three-dimensional computed tomography (3D CT) angiography clearly demonstrated the STA pseudoaneurysms. The patients underwent surgical excision of the aneurysms based on the conventional cerebral angiography findings in one patient and 3D CT angiography findings in other patient. 3D CT angiography is an excellent noninvasive diagnostic method for detecting extracranial aneurysms such as STA pseudoaneurysm, especially the relationship between the aneurysm and surrounding structures, including the calvarium.

  5. Wall Imaging for Unilateral Intracranial Vertebral Artery Hypoplasia with Three-dimensional High-isotropic Resolution Magnetic Resonance Images

    Institute of Scientific and Technical Information of China (English)

    Xian-Jin Zhu; Wu Wang; Bin Du; Lei Liu; Xin-Xin He; Li-Bin Hu; Xue-Bin Zhang

    2015-01-01

    Background:There are few studies for evaluating wall characteristics of intracranial vertebral artery hypoplasia (VAH).The aim of this study was to determine wall characteristics of VAH with three-dimensional volumetric isotropic turbo spin echo acquisition (3D VISTA) images and differentiate between acquired atherosclerotic stenosis and VAH.Methods:Thirty patients with suspicious VAH by luminograms were retrospectively enrolled between January 2014 and February 2015.The patients were classified as "acquired atherosclerotic stenosis" or "VAH" based on 3D VISTA images.The wall characteristics of VAH were assessed to determine the presence of atherosclerotic lesions,and the patients were classified into two subgroups (VAH with atherosclerosis and VAH with normal wall).Wall characteristics of basilar arteries and vertebral arteries were also assessed.The clinical and wall characteristics were compared between the two groups.Results:Five of 30 patients with suspicious VAH were finally diagnosed as acquired atherosclerotic stenosis by 3D VISTA images.25 patients were finally diagnosed as VAH including 16 (64.00%) patients with atherosclerosis and 9 (36.00%) patients with normal wall.In the 16 patients with atherosclerosis,plaque was found in 9 patients,slight wall thickening in 6 patients,and thrombus and wall thickening in 1 patient.Compared with VAH patients with normal wall,VAH patients with atherosclerosis showed atherosclerotic basilar arteries and dominant vertebral arteries more frequently (P =0.000).Conclusions:Three-dimensional VISTA images enable differentiation between the acquired atherosclerotic stenosis and VAH.VAH was also prone to atherosclerotic processes.

  6. Various Electrode Configuration in Impedance Cardiography by a Three-dimensional Finite Element Model

    Energy Technology Data Exchange (ETDEWEB)

    Kim, D.W. [Yonsei Univ., Seoul (Korea, Republic of)

    1994-09-01

    In this study impedance changes due to aortic expansion, blood and lung resistivity changes during systole were calculated for various electrode configurations in impedance cardiography using a three-dimensional finite element thoracic model. For the aortic expansion the aorta between the potential electrodes in the model was expanded for the increase of blood volume, 30ml. The blood volume increase in aorta was calculated with the basal impedance(Z) and the impedance change({Delta}Z) found from the finite element code using the formula, vol={rho}(L/Z){sup 2}{Delta}Z relating impedance change and blood volume change. The aortic expansions were simulated for six electrode configurations including the conventional one and then the blood volumes were calculated using the formula above to investigate which one was closer to the actual blood velum increase of 30ml. It was calculated to be 24ml for the conventional configuration. For the other five ones, they were all closer to 30ml than the conventional one. From the results above it can be also concluded that the impedance change in impedance cardiography is approximately proportional to the blood volume change in large arteries. (author). 10 refs., 3 figs.

  7. Diagnostic accuracy of three-dimensional contrast-enhanced automatic moving-table MR angiography in patients with peripheral arterial occlusive disease in comparison with digital subtraction angiography

    Directory of Open Access Journals (Sweden)

    Hazem Soliman

    2015-03-01

    Conclusion: Our prospective comparison shows that three-dimensional contrast-enhanced automatic moving-table MRA is a noninvasive imaging modality that has a diagnostic accuracy comparable to DSA for the assessment of peripheral arterial occlusive disease.

  8. Simple analytic functions for modeling three-dimensional flow in layered aquifers

    Science.gov (United States)

    Fitts, Charles R.

    1989-05-01

    Analytic functions are presented for modeling three-dimensional steady groundwater flow in stratified aquifers. The functions create discontinuity in the potential across an infinite plane while maintaining continuity of the potential gradient across the plane. These functions may be superimposed with other analytic functions to model three-dimensional flow in stratified aquifers under a variety of boundary conditions. An interface between two layers of different hydraulic conductivity, an impermeable boundary, or a thin leaky layer may be modeled using such functions. These functions are simple compared to functions for doublet distributions over finite plane panels and are suitable for efficient modeling.

  9. Three-dimensional Physical Modeling: Applications and Experience at Mayo Clinic.

    Science.gov (United States)

    Matsumoto, Jane S; Morris, Jonathan M; Foley, Thomas A; Williamson, Eric E; Leng, Shuai; McGee, Kiaran P; Kuhlmann, Joel L; Nesberg, Linda E; Vrtiska, Terri J

    2015-01-01

    Radiologists will be at the center of the rapid technologic expansion of three-dimensional (3D) printing of medical models, as accurate models depend on well-planned, high-quality imaging studies. This article outlines the available technology and the processes necessary to create 3D models from the radiologist's perspective. We review the published medical literature regarding the use of 3D models in various surgical practices and share our experience in creating a hospital-based three-dimensional printing laboratory to aid in the planning of complex surgeries.

  10. Three-dimensional modeling of chloroprene rubber surface topography upon composition

    Energy Technology Data Exchange (ETDEWEB)

    Žukienė, Kristina, E-mail: kristina.zukiene@ktu.lt [Department of Clothing and Polymer Products Technology, Kaunas University of Technology, Studentu St. 56, LT-51424 Kaunas (Lithuania); Jankauskaitė, Virginija [Department of Clothing and Polymer Products Technology, Kaunas University of Technology, Studentu St. 56, LT-51424 Kaunas (Lithuania); Petraitienė, Stase [Department of Applied Mathematics, Kaunas University of Technology, Studentu 50, LT-51368 Kaunas (Lithuania)

    2014-02-15

    In this study the effect of polymer blend composition on the surface roughness has been investigated and simulated. Three-dimensional modeling of chloroprene rubber film surface upon piperylene-styrene copolymer content was conducted. The efficiency of various surface roughness modeling methods, including Monte Carlo, surface growth and proposed method, named as parabolas, were compared. The required parameters for modeling were obtained from atomic force microscopy topographical images of polymer films surface. It was shown that experimental and modeled surfaces have the same correlation function. The quantitative comparison of function parameters was made. It was determined that novel parabolas method is suitable for three-dimensional polymer blends surface roughness description.

  11. Development Report on the Idaho National Laboratory Sitewide Three-Dimensional Aquifer Model

    Energy Technology Data Exchange (ETDEWEB)

    Thomas R. Wood; Catherine M. Helm-Clark; Hai Huang; Swen Magnuson; Travis McLing; Brennon Orr; Michael J. Rohe; Mitchell A. Plummer; Robert Podgorney; Erik Whitmore; Michael S. Roddy

    2007-09-01

    A sub-regional scale, three-dimensional flow model of the Snake River Plain Aquifer was developed to support remediation decisions for Waste Area Group 10, Operable Unit 10 08 at the Idaho National Laboratory (INL) Site. This model has been calibrated primarily to water levels and secondarily to groundwater velocities interpreted from stable isotope disequilibrium studies and the movement of anthropogenic contaminants in the aquifer from facilities at the INL. The three-dimensional flow model described in this report is one step in the process of constructing a fully three-dimensional groundwater flow and contaminant transport model as prescribed in the Idaho National Engineering and Environmental Laboratory Operable Unit 10-08 Sitewide Groundwater Model Work Plan. An updated three-dimensional hydrogeologic conceptual model is presented along with the geologic basis for the conceptual model. Sediment-dominated three-dimensional volumes were used to represent the geology and constrain groundwater flow as part of the conceptual model. Hydrological, geochemical, and geological data were summarized and evaluated to infer aquifer behavior. A primary observation from development and evaluation of the conceptual model was that relative to flow on a regional scale, the aquifer can be treated with steady-state conditions. Boundary conditions developed for the three-dimensional flow model are presented along with inverse simulations that estimate parameterization of hydraulic conductivity. Inverse simulations were performed using the pilot-point method to estimate permeability distributions. Thermal modeling at the regional aquifer scale and at the sub-regional scale using the inverted permeabilities is presented to corroborate the results of the flow model. The results from the flow model show good agreement with simulated and observed water levels almost always within 1 meter. Simulated velocities show generally good agreement with some discrepancies in an interpreted low

  12. Creating physically-based three-dimensional microstructures: Bridging phase-field and crystal plasticity models.

    Energy Technology Data Exchange (ETDEWEB)

    Lim, Hojun [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Owen, Steven J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Abdeljawad, Fadi F. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Hanks, Byron [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Battaile, Corbett Chandler [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2015-09-01

    In order to better incorporate microstructures in continuum scale models, we use a novel finite element (FE) meshing technique to generate three-dimensional polycrystalline aggregates from a phase field grain growth model of grain microstructures. The proposed meshing technique creates hexahedral FE meshes that capture smooth interfaces between adjacent grains. Three dimensional realizations of grain microstructures from the phase field model are used in crystal plasticity-finite element (CP-FE) simulations of polycrystalline a -iron. We show that the interface conformal meshes significantly reduce artificial stress localizations in voxelated meshes that exhibit the so-called "wedding cake" interfaces. This framework provides a direct link between two mesoscale models - phase field and crystal plasticity - and for the first time allows mechanics simulations of polycrystalline materials using three-dimensional hexahedral finite element meshes with realistic topological features.

  13. A three-dimensional digital visualization model of cervical nerves in a healthy person*

    Institute of Scientific and Technical Information of China (English)

    Jiaming Cao; Dong Fu; Sen Li

    2013-01-01

    Three-dimensional reconstruction nerve models are classically obtained from two-dimensional ages of “visible human” frozen sections. However, because of the flexibility of nerve tissues and smal color differences compared with surrounding tissues, the integrity and validity of nerve tissues can be impaired during mil ing. Thus, in the present study, we obtained two-dimensional data from a healthy volunteer based on continuous CT angiography and magnetic resonance myelography. Semi-automatic segmentation and reconstruction were then conducted at different thresholds in different tissues using Mimics software. Smal anatomical structures such as muscles and cervical nerves were reconstructed using the medical computer aided design module. Three-dimensional digital models of the cervical nerves and their surrounding structures were successful y developed, which al owed visualization of the spatial relation of anatomical structures with a strong three-dimensional effect, distinct appearance, clear distribution, and good continuity, precision, and integrality. These results indicate the validity of a three-dimensional digital visualization model of healthy human cervical nerves, which overcomes the disadvantages of mil ing, avoids data loss, and exhibits a realistic appearance and three-dimensional image.

  14. A three-dimensional digital visualization model of cervical nerves in a healthy person.

    Science.gov (United States)

    Cao, Jiaming; Fu, Dong; Li, Sen

    2013-07-15

    Three-dimensional reconstruction nerve models are classically obtained from two-dimensional ages of "visible human" frozen sections. However, because of the flexibility of nerve tissues and small color differences compared with surrounding tissues, the integrity and validity of nerve tissues can be impaired during milling. Thus, in the present study, we obtained two-dimensional data from a healthy volunteer based on continuous CT angiography and magnetic resonance myelography. Semi-automatic segmentation and reconstruction were then conducted at different thresholds in different tissues using Mimics software. Small anatomical structures such as muscles and cervical nerves were reconstructed using the medical computer aided design module. Three-dimensional digital models of the cervical nerves and their surrounding structures were successfully developed, which allowed visualization of the spatial relation of anatomical structures with a strong three-dimensional effect, distinct appearance, clear distribution, and good continuity, precision, and integrality. These results indicate the validity of a three-dimensional digital visualization model of healthy human cervical nerves, which overcomes the disadvantages of milling, avoids data loss, and exhibits a realistic appearance and three-dimensional image.

  15. Coupled Models and Parallel Simulations for Three-Dimensional Full-Stokes Ice Sheet Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Huai; Ju, Lili

    2011-01-01

    A three-dimensional full-Stokes computational model is considered for determining the dynamics, temperature, and thickness of ice sheets. The governing thermomechanical equations consist of the three-dimensional full-Stokes system with nonlinear rheology for the momentum, an advective-diffusion energy equation for temperature evolution, and a mass conservation equation for icethickness changes. Here, we discuss the variable resolution meshes, the finite element discretizations, and the parallel algorithms employed by the model components. The solvers are integrated through a well-designed coupler for the exchange of parametric data between components. The discretization utilizes high-quality, variable-resolution centroidal Voronoi Delaunay triangulation meshing and existing parallel solvers. We demonstrate the gridding technology, discretization schemes, and the efficiency and scalability of the parallel solvers through computational experiments using both simplified geometries arising from benchmark test problems and a realistic Greenland ice sheet geometry.

  16. A three-dimensional cellular automaton model for simulation of dendritic growth of magnesium alloy

    Institute of Scientific and Technical Information of China (English)

    Mengwu WU; Shoumei XIONG

    2012-01-01

    A numerical model based on the cellular automaton method for the three-dimensional simulation of dendritic growth of magnesium alloy was developed.The growth kinetics was calculated from the complete solution of the transport equations.By constructing a three-dimensional anisotropy model with the cubic CA cells,simulation of dendritic growth of magnesium alloy with six-fold symmetry in the basal plane was achieved.The model was applied to simulate the equiaxed dendritic growth and columnar dendritic growth under directional solidification,and its capability was addressed by comparing the simulated results to experimental results and those in the previously published works.Meanwhile,the three-dimensional simulated results were also compared with that of in two dimensions,offering a deep insight into the microstructure formation of magnesium alloy during solidification.

  17. Compensation in Root Water Uptake Models Combined with Three-Dimensional Root Length Density Distribution

    NARCIS (Netherlands)

    Heinen, M.

    2014-01-01

    A three-dimensional root length density distribution function is introduced that made it possible to compare two empirical uptake models with a more mechanistic uptake model. Adding a compensation component to the more empirical model resulted in predictions of root water uptake distributions

  18. Three-dimensional semi-idealized model for tidal motion in tidal estuaries

    NARCIS (Netherlands)

    Kumar, M.; Schuttelaars, H.M.; Roos, P.C.; Möller, M.

    2015-01-01

    In this paper, a three-dimensional semi-idealized model for tidal motion in a tidal estuary of arbitrary shape and bathymetry is presented. This model aims at bridging the gap between idealized and complex models. The vertical profiles of the velocities are obtained analytically in terms of the firs

  19. Creating Three-dimensional Printed Models of Acetabular Fractures for Use as Educational Tools.

    Science.gov (United States)

    Manganaro, Matthew S; Morag, Yoav; Weadock, William J; Yablon, Corrie M; Gaetke-Udager, Kara; Stein, Erica B

    2017-01-01

    Acetabular fractures are frequently encountered in some clinical practices, and the precise classification of these fractures greatly influences treatments and outcomes. The authors identified the need for an educational aid when teaching acetabular fracture classifications, given the complex spatial anatomy and the nonintuitive classification system that is commonly used. Three-dimensional ( 3D three-dimensional ) printing is an evolving technique that has applications as an educational aid, providing the student with a tangible object to interact with and learn from. In this article, the authors review their experience creating 3D three-dimensional printed models of the hip for educational purposes. Their goal was to create 3D three-dimensional printed models for use as educational aids when teaching acetabular fracture classifications. Complex cases involving a combination of fracture types, subtle nondisplaced fractures, and/or fractures with associated osteopenia or artifacts were excluded. The selected computed tomographic (CT) scans were loaded into a medical 3D three-dimensional volume-rendering program, and a 3D three-dimensional volumetric model was created. Standard Tessellation Language ( STL Standard Tessellation Language ) files were then exported to STL Standard Tessellation Language model-editing software and edited to retain only the involved hemipelvis. In some cases, the proximal femur and ipsilateral hemisacrum may be included to emphasize hip alignment or disruption of the force transfer. Displaced fracture fragments can be printed as separate segments or a single unit after the addition of struts. Printing was performed by using an additive manufacturing principle, with approximately 36-48 hours needed for printing, postprocessing, and drying. The cost to print a 1:1 scale model was approximately $100-$200, depending on the amount of plastic material used. These models can then be painted according to the two-column theory regarding acetabular

  20. Three-dimensional loading model for periodontal ligament regeneration in vitro

    NARCIS (Netherlands)

    Berendsen, A.D.; Smit, T.H.; Walboomers, X.F.; Everts, V.; Jansen, J.A.; Bronckers, A.L.J.J.

    2009-01-01

    In this study we present a new three-dimensional (3D) model to study effects of mechanical loading on tendon/ligament formation in vitro. The model mimics a functional periodontal ligament (PDL), which anchors dental roots to the jaw bone and transfers the axial load of mastication to the jaw bone.

  1. Three-dimensional loading model for periodontal ligament regeneration in vitro.

    NARCIS (Netherlands)

    Berendsen, A.D.; Smit, T.H.; Walboomers, X.F.; Everts, V.; Jansen, J.A.; Bronckers, A.L.

    2009-01-01

    In this study we present a new three-dimensional (3D) model to study effects of mechanical loading on tendon/ligament formation in vitro. The model mimics a functional periodontal ligament (PDL), which anchors dental roots to the jaw bone and transfers the axial load of mastication to the jaw bone.

  2. Three-dimensional loading model for periodontal ligament regeneration in vitro.

    NARCIS (Netherlands)

    Berendsen, A.D.; Smit, T.H.; Walboomers, X.F.; Everts, V.; Jansen, J.A.; Bronckers, A.L.

    2009-01-01

    In this study we present a new three-dimensional (3D) model to study effects of mechanical loading on tendon/ligament formation in vitro. The model mimics a functional periodontal ligament (PDL), which anchors dental roots to the jaw bone and transfers the axial load of mastication to the jaw bone.

  3. Three-dimensional loading model for periodontal ligament regeneration in vitro

    NARCIS (Netherlands)

    A.D. Berendsen; T.H. Smit; X.F. Walboomers; V. Everts; J.A. Jansen; A.L.J.J. Bronckers

    2009-01-01

    In this study we present a new three-dimensional (3D) model to study effects of mechanical loading on tendon/ligament formation in vitro. The model mimics a functional periodontal ligament (PDL), which anchors dental roots to the jaw bone and transfers the axial load of mastication to the jaw bone.

  4. Three-Dimensional Model Test Study of Xbloc Armoured Breakwaters at Punta Catalina, Dominican Republic

    DEFF Research Database (Denmark)

    Røge, Mads Sønderstrup; Andersen, Thomas Lykke

    The present report presents results from a three-dimensional model test study carried out at Aalborg University in the period June 2015 – August 2015. The objectives of the model tests were to study the stability of the Xbloc armoured breakwaters at Punta Catalina under short-crested wave attack...

  5. Three Dimensional Thermal Modeling of Li-Ion Battery Pack Based on Multiphysics and Calorimetric Measurement

    DEFF Research Database (Denmark)

    Khan, Mohammad Rezwan; Kær, Søren Knudsen

    2016-01-01

    A three-dimensional multiphysics-based thermal model of a battery pack is presented. The model is intended to demonstrate the cooling mechanism inside the battery pack. Heat transfer (HT) and computational fluid dynamics (CFD) physics are coupled for both time-dependent and steady-state simulatio...

  6. Three-dimensional finite element modeling of a magnet array spinning above a conductor

    Science.gov (United States)

    Lorimer, W. L.; Lieu, D. K.; Hull, J. R.; Mulcahy, T. M.; Rossing, T. D.

    Drag forces due to eddy currents induced by the relative motion of a conductor and a magnetic field occur in many practical devices: motors, brakes, magnetic bearings, and magnetically levitated vehicles. Recently, finite element codes have included solvers for three dimensional eddy current geometries and have the potential to be very useful in the design and analysis of these devices. In this paper, numerical results from three dimensional modeling of a magnet array spinning above a conductor are compared to experimental results in order to assess the capabilities of these codes.

  7. Analysis of the three-dimensional tongue shape using a three-index factor analysis model

    Science.gov (United States)

    Zheng, Yanli; Hasegawa-Johnson, Mark; Pizza, Shamala

    2003-01-01

    Three-dimensional tongue shape during vowel production is analyzed using the three-mode PARAFAC (parallel factors) model. Three-dimensional MRI images of five speakers (9 vowels) are analyzed. Sixty-five virtual fleshpoints (13 segments along the rostral-caudal dimension and 5 segments along the right-left direction) are chosen based on the interpolated tongue shape images. Methods used to adjust the alignment of MRI images, to set up the fleshpoints, and to measure the position of the fleshpoints are presented. PARAFAC analysis of this 3D coordinate data results in a stable two-factor solution that explains about 70% of the variance.

  8. Microstructure modeling and virtual test of asphalt mixture based on three-dimensional discrete element method

    Institute of Scientific and Technical Information of China (English)

    马涛; 张德育; 张垚; 赵永利; 黄晓明

    2016-01-01

    The objective of this work is to model the microstructure of asphalt mixture and build virtual test for asphalt mixture by using Particle Flow Code in three dimensions (PFC3D) based on three-dimensional discrete element method. A randomly generating algorithm was proposed to capture the three-dimensional irregular shape of coarse aggregate. And then, modeling algorithm and method for graded aggregates were built. Based on the combination of modeling of coarse aggregates, asphalt mastic and air voids, three-dimensional virtual sample of asphalt mixture was modeled by using PFC3D. Virtual tests for penetration test of aggregate and uniaxial creep test of asphalt mixture were built and conducted by using PFC3D. By comparison of the testing results between virtual tests and actual laboratory tests, the validity of the microstructure modeling and virtual test built in this study was verified. Additionally, compared with laboratory test, the virtual test is easier to conduct and has less variability. It is proved that microstructure modeling and virtual test based on three-dimensional discrete element method is a promising way to conduct research of asphalt mixture.

  9. Three-dimensional virtual model and animation of penile lengthening surgery.

    Science.gov (United States)

    Wang, Ruiheng; Yang, Dongyun; Li, Shirong

    2012-10-01

    Three-dimensional digital models, animations, and simulations have been used in the plastic surgical field for surgical education and training and patient education. In penile lengthening surgery, proper patient selection and well-designed surgical interventions are necessary; however, no such surgical or patient education tool exists. Using magnetic resonance images as references, a preliminary three-dimensional digital model of the penis with its adjacent structures was constructed using Amira 5. This preliminary model was imported into Maya 2009, a computer modeling and animation software program, for processing to correct many defects. The refined model was used to create digital animation of penile lengthening surgery, including ordered steps of the procedure, using Maya 2009 and Adobe After Effects CS4. A three-dimensional digital animation was created to illustrate penile lengthening surgery. All major surgical steps were demonstrated, including exposure, transversal incision of the fundiform ligament, partial division and release of the suspensory ligament. Three-dimensional digital models and animations of penile lengthening surgery may serve as resources for patient education to facilitate patient selection and resident education outside the operating room. Copyright © 2012 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  10. Study on establishment of virtual three-dimensional model of the virtual artery and interventional devices and its application value%虚拟动脉及介入器械三维模型的建立及其应用价值

    Institute of Scientific and Technical Information of China (English)

    魏欣; 钟立明; 游箭; 胡鸿; 胡孔琼; 赵晓伟; 晓霞

    2014-01-01

    目的:探讨虚拟动脉及介入器械三维模型的建立方法及应用价值。方法应用三维造型软件3D Studio MAX R3创建虚拟的动脉系统以及导丝、导管、支架、弹簧圈等介入器械模型,在计算机上进行血管内介入治疗的术前模拟及辅助教学方面的评估。结果①所有虚拟器械与真实器械高度相似,动脉系统逼真直观。②所有动脉支均具有各自名称,均可任意调整曲度、直径及建立病变形态。③术前模拟结果对于实际手术的参考价值包括:指导术中微导管、微导丝头端合理塑形;计划弹簧圈及支架释放的位置、数量和尺寸。④在教学培训方面的作用包括:辅助各动脉支的学习记忆及建立三维空间概念;加强低年资医生对手术意图的理解。结论建立动脉及虚拟器械模型的方法可靠,术前模拟结果能较准确地指导实际操作,对于医学生的教学培训具有重要辅助作用。%Objective To explore the establishment method of virtual three-dimensional model of the virtual artery and interven-tional devices,and its application value.Methods The virtual models including virtual artery system,catheter,guide wire,stent and coil were established by using the three-dimensional moulding software of 3D Studio MAX R3.The study about interventional preoperative simulation and assistant instruction were run in personal computer.Results ①All the virtual instruments and real in-struments were highly similar shape,the arterial system in the visual display was similar to realistic system.②All arteries branches had own name,could be arbitrarily adjusted curvature,diameter and established the lesion morphology.③The reference value of preoperative simulation results to guide the actual surgery included following aspects:to guide the reasonable shaping of micro-cathe-ter and micro-guide wire tip,to plan the coil and stent deployment location,number and size.④In training

  11. Plaques of Nonstenotic Basilar Arteries with Isolated Pontine Infarction on Three-dimensional High Isotropic Resolution Magnetic Resonance Imaging

    Institute of Scientific and Technical Information of China (English)

    Xian-Jin Zhu; Wei-Jian Jiang; Lei Liu; Li-Bin Hu; Wu Wang; Zun-Jing Liu

    2015-01-01

    Background:There are few studies for evaluating plaque characteristics of nonstenotic basilar arteries (BA).Our aim was to determine entire BA plaques with a three-dimensional volumetric isotropic turbo spin-echo acquisition (VISTA) and investigate the differences between the patients with and without isolated pontine infarction (IPI).Methods:Twenty-four consecutive symptomatic patients with nonstenotic BA on time of flight magnetic resonance angiography (TOF MRA) were enrolled from China-Japan Friendship Hospital between January 2014 and December 2014.BA was classified as "normal" or"irregular" based on TOF MRA,and "normal wall","slight wall-thickening",and "plaque" based on three-dimensional VISTA images.Outcomes from MRA and VISTA were compared.Patients were categorized as IPI and non-IPI groups based on the diffusion-weighted imaging.Clinical and plaque characteristics were compared between the two groups.Results:A total of 1024 image slices including 311 (30.37%) plaque slices,427 (41.70%) slight wall-thickening slices,and 286 (27.93%) normal wall slices for the entire BA from 23 patients were finally included for analysis.VISTA images detected plaques in all the 9 (100%) irregular MRA patients and 7 of 14 (50%) normal MRA patients.IPI was found in 1 1 (47.83%) patients.Compared to non-IPI group,the IPI group had a higher percentage of plaque slices (P =0.001) and lower percentage of normal wall slices (P =0.014) than non-IPI group.Conclusions:Three-dimensional VISTA images enable detection of BA plaques not visualized by MRA.BA plaques could be found in both the IPI and non-IPI group.However,IPI group showed plaques more extensively in BA than the non-IPI group.

  12. Magnetic resonance imaging of the coronary arteries : anatomy of the coronary arteries and veins in three-dimensional imaging

    NARCIS (Netherlands)

    van Geuns, R J; Wielopolski, P A; Rensing, B J; van Ooijen, P M; Oudkerk, M; de Feyter, P J

    Magnetic resonance imaging of coronary arteries will visualize, besides the arteries, the myocardium, blood in the cavities and cardiac veins. This will hamper the application of projectional visualization techniques such as those used in conventional coronary angiography. Volume rendering, a

  13. On two-dimensionalization of three-dimensional turbulence in shell models

    DEFF Research Database (Denmark)

    Chakraborty, Sagar; Jensen, Mogens Høgh; Sarkar, A.

    2010-01-01

    Applying a modified version of the Gledzer-Ohkitani-Yamada (GOY) shell model, the signatures of so-called two-dimensionalization effect of three-dimensional incompressible, homogeneous, isotropic fully developed unforced turbulence have been studied and reproduced. Within the framework of shell...

  14. Correlation of experimental data and three-dimensional finite element modeling of a spinning quadrupole

    Science.gov (United States)

    Lorimer, W. L.; Lieu, D. K.; Hull, J. R.; Mulcahy, T. M.; Rossing, T. D.

    A permanent magnet quadrupole spinning over an aluminum disk was constructed, and drag torque was measured for various speeds and gap sizes. The experiment was modeled using a three-dimensional finite element program. Experimental and analytical results were compared, and the effect of magnet polarity was determined.

  15. Numerical evidence of spin-chirality decoupling in the three-dimensional heisenberg spin glass model.

    Science.gov (United States)

    Viet, Dao Xuan; Kawamura, Hikaru

    2009-01-16

    Ordering of the three-dimensional Heisenberg spin glass with Gaussian coupling is studied by extensive Monte Carlo simulations. The model undergoes successive chiral-glass and spin-glass transitions at nonzero temperatures T_{CG}>T_{SG}>0, exhibiting spin-chirality decoupling.

  16. Preliminary Monte Carlo Results for the Three-Dimensional Holstein Model

    Institute of Scientific and Technical Information of China (English)

    吴焰立; 刘川; 罗强

    2003-01-01

    Monte Carlo simulations are used to study the three-dimensional Holstein model. The relationship between the band filling and the chemical potential is obtained for various phonon frequencies and temperatures. The energy of a single electron or a hole is also calculated as a function of the lattice momenta.

  17. Three-dimensional Modeling of Anode-supported Planar SOFC with Direct Internal Reforming

    NARCIS (Netherlands)

    Qu, Z.; Aravind, P.V.; Ye, H.; Dekker, N.J.J.; Woudstra, N.; Verkooijen, A.H.M.

    2009-01-01

    This paper presents a three-dimensional model of an anode-supported planar SOFC with corrugated bipolar plates serving as gas channels and current collector above the active area of the cell, based on the direct internal reforming reaction of methane and the electrochemical reaction of hydrogen. A c

  18. Three-dimensional modelling of thrust-controlled foreland basin stratigraphy

    NARCIS (Netherlands)

    Clevis, Q. (Quintijn)

    2003-01-01

    In this thesis a tectono-sedimentary forward model has been presented, devised to simulate sediment erosion and deposition in a coupled drainage basin - foreland system, as well as accumulating a three-dimensional stratigraphy. The aim of the research was to investigate which features recorded in th

  19. Fusing range and intensity images for generating dense models of three-dimensional environments

    DEFF Research Database (Denmark)

    Ellekilde, Lars-Peter; Miró, Jaime Valls; Dissanayake., Gamini

    This paper presents a novel strategy for the construction of dense three-dimensional environment models by combining images from a conventional camera and a range imager. Ro- bust data association is ?rst accomplished by exploiting the Scale Invariant Feature Transformation (SIFT) technique...

  20. Surprising convergence of the Monte Carlo renormalization group for the three-dimensional Ising model.

    Science.gov (United States)

    Ron, Dorit; Brandt, Achi; Swendsen, Robert H

    2017-05-01

    We present a surprisingly simple approach to high-accuracy calculations of the critical properties of the three-dimensional Ising model. The method uses a modified block-spin transformation with a tunable parameter to improve convergence in the Monte Carlo renormalization group. The block-spin parameter must be tuned differently for different exponents to produce optimal convergence.

  1. Articular contact in a three-dimensional model of the knee

    NARCIS (Netherlands)

    Blankevoort, L.; Kuiper, J.H.; Huiskes, R.; Grootenboer, H.J.

    1991-01-01

    This study is aimed at the analysis of articular contact in a three-dimensional mathematical model of the human knee-joint. In particular the effect of articular contact on the passive motion characteristics is assessed in relation to experimentally obtained joint kinematics. Two basically different

  2. A three-dimensional finite element model of the polymerization process in dental restorations.

    NARCIS (Netherlands)

    Barink, M.; Mark, P.C. van der; Fennis, W.M.M.; Kuys, R.H.; Kreulen, C.M.; Verdonschot, N.J.J.

    2003-01-01

    Restoration of dental restorations with resin composite is hampered by shrinkage of the material during the polymerization process. In this study, we simulated the polymerization process in a detailed three-dimensional finite element model of a human upper premolar with a cusp-replacing restoration.

  3. Comparison of inverse dynamics calculated by two- and three-dimensional models during walking

    DEFF Research Database (Denmark)

    Alkjaer, T; Simonsen, E B; Dyhre-Poulsen, P

    2001-01-01

    The purpose of the study was to compare joint moments calculated by a two- (2D) and a three-dimensional (3D) inverse dynamics model to examine how the different approaches influenced the joint moment profiles. Fifteen healthy male subjects participated in the study. A five-camera video system rec...

  4. Three-Dimensional Modeling with CAD%CAD下三维建模研究

    Institute of Scientific and Technical Information of China (English)

    张凯选; 闫野; 魏来

    2012-01-01

    In this paper, the first example of Liaoning Engineering Applications Auto CAD 2007 campus on campus buildings, grounds, lawn and ancillary facilities in three-dimensional modeling, and research through the operation to three-dimensional Auto CAD 2007 modeling techniques and methods more sophisticated and flexible, after the three-dimensional model of Auto CAD 2007 application, built a good model classification after adding a good layer in the Arc GIS 9.2 software loaded into the Arc GIS 9.2 to achieve three-dimensional digital campus. Finally, three-dimensional modeling of operations and research and in the Arc GIS 9.2 software, 3D Digital Campus to three-dimensional modeling and Auto CAD 2007modeling of a detailed comparison 3DS MAX three-dimensional modeling identify than other 3D software is more suitable for the advantages of GIS.%以辽宁工程技术大学校园为例首先应用Auto CAD 2007对校园内建筑物、场地、草坪及附属设施进行三维建模,通过操作和研究使Auto CAD 2007三维建模技术和方法更加成熟和灵活,之后研究AUTO CAD 2007三维模型的应用,将建好的三维模型分类添加好图层以后加载到Arc GIS 9.2软件中,在Arc GIS 9.2软件中实现三维数字校园.最后通过三维建模的操作和研究及在Arc GIS 9.2软件三维数字校园的实现把Auto CAD 2007三维建模与3DS MAX建模做详细对比找出Auto CAD 2007三维建模比其他3D软件更加适合应用于GIS的优势.

  5. Turbo fast three-dimensional carotid artery black-blood MRI by combining three-dimensional MERGE sequence with compressed sensing.

    Science.gov (United States)

    Li, Bo; Dong, Li; Chen, Bin; Ji, Shuangxi; Cai, Wenchao; Wang, Ye; Zhang, Jue; Zhang, Zhaoqi; Wang, Xiaoying; Fang, Jing

    2013-11-01

    In this study, we sought to investigate the feasibility of turbo fast three-dimensional (3D) black-blood imaging by combining a 3D motion-sensitizing driven equilibrium rapid gradient echo sequence with compressed sensing. A pseudo-centric phase encoding order was developed for compressed sensing-3D motion-sensitizing driven equilibrium rapid gradient echo to suppress flow signal in undersampled 3D k-space. Nine healthy volunteers were recruited for this study. Signal-to-tissue ratio, contrast-to-tissue ratio (CTR) and CTR efficiency (CTReff ) between fully sampled and undersampled images were calculated and compared in seven subjects. Moreover, isotropic high resolution images using different compressed sensing acceleration factors were evaluated in two other subjects. Wall-lumen signal-to-tissue ratio or CTR were comparable between the undersampled and the fully sampled images, while significant improvement of CTReff was achieved in the undersampled images. At an isotropic high spatial resolution of 0.7 × 0.7 × 0.7 mm(3) , all undersampled images exhibited similar level of the flow suppression efficiency and the capability of delineating outer vessel wall boundary and lumen-wall interface, when compared with the fully sampled images. The proposed turbo fast compressed sensing 3D black-blood imaging technique improves scan efficiency without sacrificing flow suppression efficiency and vessel wall image quality. It could be a valuable tool for rapid 3D vessel wall imaging. Copyright © 2012 Wiley Periodicals, Inc.

  6. A three-dimensional pelvic model made with a three-dimensional printer: applications for laparoscopic surgery to treat rectal cancer.

    Science.gov (United States)

    Hamabe, A; Ito, M

    2017-05-01

    To help understand the three-dimensional (3D) spatial relationships among the highly complex structures of the pelvis, we made a novel 3D pelvic model with a 3D printing system. We created two pelvic models including the muscles, vessels, nerves, and urogenital organs; the first based on the pelvic anatomy of a healthy male volunteer and the second on the pelvic anatomy of a female volunteer with rectal cancer. The models clearly demonstrated the complicated spatial relationships between anatomical structures in the pelvis. Surgeons could use these models to improve their spatial understanding of pelvic anatomy, which could consequently improve the safety and efficiency of laparoscopic rectal cancer surgery.

  7. EVALUATION OF THREE-DIMENSIONAL NUMERICAL MODEL FOR SALINE INTRUSION AND PURGING IN SEWAGE OUTFALLS

    Institute of Scientific and Technical Information of China (English)

    WU Wei; YAN Zhong-min

    2007-01-01

    Saline intrusion into sewage outfalls will greatly decrease the efficiency of the structures. The numerical model for this flow has been limited to one- and two-dimensional ones. In this article, a three-dimensional numerical model for saline intrusion and purging in sewage outfalls was developed. The flow was modeled in three dimensions under turbulent conditions with the RNG turbulence model. The numerical results provided quantitative evidence of the fundamental flow mechanisms that took place during saline intrusion and purging. The comparisons of the results with that of two-dimensional model and that of experiments indicate that the three-dimensional numerical model developed in this article is more effective in predicting the internal flow in outfalls.

  8. A three-dimensional constitutive model for magnetic shape memory alloys under magneto-mechanical loadings

    Science.gov (United States)

    Mousavi, Mohammad Reza; Arghavani, Jamal

    2017-01-01

    This paper presents a three-dimensional phenomenological constitutive model for magnetic shape memory alloys (MSMAs), developed within the framework of irreversible continuum thermodynamics. To this end, a proper set of internal variables is introduced to reflect the microstructural consequences on the material macroscopic behavior. Moreover, a stress-dependent thermodynamic force threshold for variant reorientation is introduced which improves the model accuracy. Preassumed kinetic equations for magnetic domain volume fractions, decoupled equations for magnetization unit vectors and appropriate presentation of the limit function for martensite variant reorientation lead to a simple formulation of the proposed constitutive model. To show the model capability in reproducing the main features of MSMAs, several numerical examples are solved and compared with available experimental data as well as available three-dimensional constitutive models in the literature. Demonstrating good agreement with experimental data besides possessing computational advantages, the proposed constitutive model can be used for analysis of MSMA-based smart structures.

  9. Three-dimensional Modelling Technology for City Indoor Positioning and Navigation Applications

    Science.gov (United States)

    Zhang, Xin; Chen, Yongxin; Wang, Weisheng

    2016-11-01

    For city indoor positioning and navigation applications, there are two technical problems should be solved, which are the modelling efficiency and the validity and accuracy of the spatial models. In this paper, the quick modelling technology is introduced which uses the multi-angle remote sensing based on the unmanned aerial vehicle measurement. To enhance the validity and accuracy of the spatial models, we proposed an algorithm to remove the line style and planar style foreground occlusions before reconstructing backgrounds. The three-dimensional models can only provide the spatial framework for the city indoor positioning. Furthermore, the simple indoor three-dimensional modelling technology which is based on the building design drawings. In the end, the application in the public safety emergency rescue is introduced.

  10. Development of a three dimensional circulation model based on fractional step method

    Directory of Open Access Journals (Sweden)

    Mazen Abualtayef

    2010-03-01

    Full Text Available A numerical model was developed for simulating a three-dimensional multilayer hydrodynamic and thermodynamic model in domains with irregular bottom topography. The model was designed for examining the interactions between flow and topography. The model was based on the three-dimensional Navier-Stokes equations and was solved using the fractional step method, which combines the finite difference method in the horizontal plane and the finite element method in the vertical plane. The numerical techniques were described and the model test and application were presented. For the model application to the northern part of Ariake Sea, the hydrodynamic and thermodynamic results were predicted. The numerically predicted amplitudes and phase angles were well consistent with the field observations.

  11. Fully three-dimensional simulation and modeling of a dense plasma focus

    Energy Technology Data Exchange (ETDEWEB)

    Meehan, B. T.; Niederhaus, J. H. J.

    2014-10-01

    A dense plasma focus (DPF) is a pulsed-power machine that electromagnetically accelerates and cylindrically compresses a shocked plasma in a Z-pinch. The pinch results in a brief (~ 100 ns) pulse of X-rays, and, for some working gases, also a pulse of neutrons. A great deal of experimental research has been done into the physics of DPF reactions, and there exist mathematical models describing its behavior during the different time phases of the reaction. Two of the phases, known as the inverse pinch and the rundown, are approximately governed by magnetohydrodynamics, and there are a number of well-established codes for simulating these phases in two dimensions or in three dimensions under the assumption of axial symmetry. There has been little success, however, in developing fully three-dimensional simulations. In this work we present three-dimensional simulations of DPF reactions and demonstrate that three-dimensional simulations predict qualitatively and quantitatively different behavior than their two-dimensional counterparts. One of the most important quantities to predict is the time duration between the formation of the gas shock and Z-pinch, and the three-dimensional simulations more faithfully represent experimental results for this time duration and are essential for accurate prediction of future experiments.

  12. Research on Parametric Process Planning Technology Based on Three-dimensional Part Model

    Institute of Scientific and Technical Information of China (English)

    DING Yufeng; WEI Zhongling

    2006-01-01

    CAPP(Computer Aided Process Planning) has already become the bottleneck of CAD/CAM system. Present two-dimensional CAPP system which is used in the enterprise needs to be input information and data again, because it can not draw data from CAD(Computer Aided Design)model automatically after building CAD model and drawing. This has influenced extensive use of CAPP system because of its low efficiency. In this paper, three-dimensional model is built by using the parametric method, the process file can be produced directly through drawing corresponding characteristic and parameter from the model with the aid of process database. This improves the efficiency of product development. Visual C++ 6.0 and SQL Server 2000 are used to develop WTJDCAPP prototype system based on component model and SolidWorks three-dimensional CAD platform. Engine valve-seat is taken as concrete object to validate of the technology.

  13. Development and application of a three-dimensional finite element vapor intrusion model.

    Science.gov (United States)

    Pennell, Kelly G; Bozkurt, Ozgur; Suuberg, Eric M

    2009-04-01

    Details of a three-dimensional finite element model of soil vapor intrusion, including the overall modeling process and the stepwise approach, are provided. The model is a quantitative modeling tool that can help guide vapor intrusion characterization efforts. It solves the soil gas continuity equation coupled with the chemical transport equation, allowing for both advective and diffusive transport. Three-dimensional pressure, velocity, and chemical concentration fields are produced from the model. Results from simulations involving common site features, such as impervious surfaces, porous foundation sub-base material, and adjacent structures are summarized herein. The results suggest that site-specific features are important to consider when characterizing vapor intrusion risks. More importantly, the results suggest that soil gas or subslab gas samples taken without proper regard for particular site features may not be suitable for evaluating vapor intrusion risks; rather, careful attention needs to be given to the many factors that affect chemical transport into and around buildings.

  14. Effect of calcification on the mechanical stability of plaque based on a three-dimensional carotid bifurcation model

    Directory of Open Access Journals (Sweden)

    Wong Kelvin KL

    2012-02-01

    Full Text Available Abstract Background This study characterizes the distribution and components of plaque structure by presenting a three-dimensional blood-vessel modelling with the aim of determining mechanical properties due to the effect of lipid core and calcification within a plaque. Numerical simulation has been used to answer how cap thickness and calcium distribution in lipids influence the biomechanical stress on the plaque. Method Modelling atherosclerotic plaque based on structural analysis confirms the rationale for plaque mechanical examination and the feasibility of our simulation model. Meaningful validation of predictions from modelled atherosclerotic plaque model typically requires examination of bona fide atherosclerotic lesions. To analyze a more accurate plaque rupture, fluid-structure interaction is applied to three-dimensional blood-vessel carotid bifurcation modelling. A patient-specific pressure variation is applied onto the plaque to influence its vulnerability. Results Modelling of the human atherosclerotic artery with varying degrees of lipid core elasticity, fibrous cap thickness and calcification gap, which is defined as the distance between the fibrous cap and calcification agglomerate, form the basis of our rupture analysis. Finite element analysis shows that the calcification gap should be conservatively smaller than its threshold to maintain plaque stability. The results add new mechanistic insights and methodologically sound data to investigate plaque rupture mechanics. Conclusion Structural analysis using a three-dimensional calcified model represents a more realistic simulation of late-stage atherosclerotic plaque. We also demonstrate that increases of calcium content that is coupled with a decrease in lipid core volume can stabilize plaque structurally.

  15. Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier.

    Science.gov (United States)

    Lopreore, Courtney L; Bartol, Thomas M; Coggan, Jay S; Keller, Daniel X; Sosinsky, Gina E; Ellisman, Mark H; Sejnowski, Terrence J

    2008-09-15

    A computational model is presented for the simulation of three-dimensional electrodiffusion of ions. Finite volume techniques were used to solve the Poisson-Nernst-Planck equation, and a dual Delaunay-Voronoi mesh was constructed to evaluate fluxes of ions, as well as resulting electric potentials. The algorithm has been validated and applied to a generalized node of Ranvier, where numerical results for computed action potentials agree well with cable model predictions for large clusters of voltage-gated ion channels. At smaller channel clusters, however, the three-dimensional electrodiffusion predictions diverge from the cable model predictions and show a broadening of the action potential, indicating a significant effect due to each channel's own local electric field. The node of Ranvier complex is an elaborate organization of membrane-bound aqueous compartments, and the model presented here represents what we believe is a significant first step in simulating electrophysiological events with combined realistic structural and physiological data.

  16. Three-dimensional transient mathematical model to predict the heat transfer rate of a heat pipe

    Directory of Open Access Journals (Sweden)

    S Boothaisong

    2015-02-01

    Full Text Available A three-dimensional model was developed to simulate the heat transfer rate on a heat pipe in a transient condition. This article presents the details of a calculation domain consisting of a wall, a wick, and a vapor core. The governing equation based on the shape of the pipe was numerically simulated using the finite element method. The developed three-dimensional model attempted to predict the transient temperature, the velocity, and the heat transfer rate profiles at any domain. The values obtained from the model calculation were then compared with the actual results from the experiments. The experiment showed that the time required to attain a steady state (where transient temperature is constant was reasonably consistent with the model. The working fluid r134a (tetrafluoroethane was the quickest to reach the steady state and transferred the greatest amount of heat.

  17. Three-dimensional thermal finite element modeling of lithium-ion battery in thermal abuse application

    Science.gov (United States)

    Guo, Guifang; Long, Bo; Cheng, Bo; Zhou, Shiqiong; Xu, Peng; Cao, Binggang

    In order to better understand the thermal abuse behavior of high capacities and large power lithium-ion batteries for electric vehicle application, a three-dimensional thermal model has been developed for analyzing the temperature distribution under abuse conditions. The model takes into account the effects of heat generation, internal conduction and convection, and external heat dissipation to predict the temperature distribution in a battery. Three-dimensional model also considers the geometrical features to simulate oven test, which are significant in larger cells for electric vehicle application. The model predictions are compared to oven test results for VLP 50/62/100S-Fe (3.2 V/55 Ah) LiFePO 4/graphite cells and shown to be in great agreement.

  18. Three-Dimensional Scale-Model Tank Experiment of the Hudson Canyon Region

    Science.gov (United States)

    2014-09-30

    Three-Dimensional Scale-Model Tank Experiment of the Hudson Canyon Region Jason D. Sagers Applied Research Laboratories at The University of...planning for future experiments in ocean environments with slopes and canyons . APPROACH The development of fully 3D numerical acoustic propagation models...Experiment of the Hudson Canyon Region 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) 5d. PROJECT NUMBER 5e. TASK NUMBER

  19. Three-dimensional Solute Transport Modeling in Coupled Soil and Plant Root Systems

    OpenAIRE

    2014-01-01

    Many environmental and agricultural challenges rely on the proper understanding of water flow and solute transport in soils, for example the carbon cycle, crop growth, irrigation scheduling or fate of pollutants in subsoil. Current modeling approaches typically simulate plant uptake via empirical approaches, which neglect the three-dimensional (3D) root architecture. Yet, nowadays 3D soil-root water and solute models on plant-scale exist, which can be used for assessing the impact of root arc...

  20. Pakal: A Three-dimensional Model to Solve the Radiative Transfer Equation

    OpenAIRE

    De la Luz, Victor; Lara, Alejandro; Mendoza-Torres, J. E.; Selhorst, Caius L.

    2011-01-01

    We present a new numerical model called "Pakal" intended to solve the radiative transfer equation in a three-dimensional (3D) geometry, using the approximation for a locally plane-parallel atmosphere. Pakal uses pre-calculated radial profiles of density and temperature (based on hydrostatic, hydrodynamic, or MHD models) to compute the emission from 3D source structures with high spatial resolution. Then, Pakal solves the radiative transfer equation in a set of (3D) ray paths, going from the s...

  1. Three-Dimensional Simulation of SOFC Anode Polarization Characteristics Based on Sub-Grid Scale Model

    OpenAIRE

    2011-01-01

    Three-dimensional numerical simulation of SOFC anode polarization is conducted with a structure obtained by a focused ion beam and scanning electron microscope (FIB-SEM). Electronic, ionic and gaseous transports with electrochemical reaction are considered. A sub-grid scale model is newly developed and effectively used to evaluate the transport flux in the porous structure. The proposed SGS model shows its potential to reasonably evaluate the transport flux considering the microstructure smal...

  2. Documentation of finite-difference model for simulation of three-dimensional ground-water flow

    Science.gov (United States)

    Trescott, Peter C.; Larson, S.P.

    1976-01-01

    User experience has indicated that the documentation of the model of three-dimensional ground-water flow (Trescott and Larson, 1975) should be expanded. This supplement is intended to fulfill that need. The original report emphasized the theory of the strongly implicit procedure, instructions for using the groundwater-flow model, and practical considerations for application. (See also W76-02962 and W76-13085) (Woodard-USGS)

  3. Renal Arteries: Isotropic, High-Spatial-Resolution, Unenhanced MR Angiography with Three-dimensional Radial Phase Contrast1

    Science.gov (United States)

    Lum, Darren P.; Johnson, Kevin M.; Landgraf, Benjamin R.; Bley, Thorsten A.; Reeder, Scott B.; Schiebler, Mark L.; Grist, Thomas M.; Wieben, Oliver

    2011-01-01

    Purpose: To prospectively compare a new three-dimensional (3D) radial phase-contrast magnetic resonance (MR) angiographic method with contrast material–enhanced MR angiography for anatomic assessment of the renal arteries. Materials and Methods: An institutional review board approved this prospective HIPAA-compliant study. Informed consent was obtained. Twenty-seven subjects (mean age, 52.6 years ± 20.5 [standard deviation]) were imaged with respiratory-gated phase-contrast vastly undersampled isotropic projection reconstruction (VIPR) prior to contrast-enhanced MR angiographic acquisition with a 3.0-T clinical system. The imaging duration for phase-contrast VIPR was 10 minutes and provided magnitude and complex difference (“angiographic”) images with 3D volumetric (320 mm) coverage and isotropic high spatial resolution (1.25 mm3). Quantitative analysis consisted of comparing vessel diameters between the two techniques. Qualitative assessment included evaluation of the phase-contrast VIPR and contrast-enhanced MR angiographic techniques for artifacts, noise, and image quality. Bland-Altman analysis was used for comparison of quantitative measurements, and the Wilcoxon signed rank test was used for comparison of qualitative scores. Results: Phase-contrast VIPR images were successfully acquired in all subjects. The vessel diameters measured with phase-contrast VIPR were slightly greater than those measured with contrast-enhanced MR angiography (mean bias = 0.09 mm). Differences in mean artifact, quality scores for the proximal renal arteries, and overall image quality scores between phase-contrast VIPR and contrast-enhanced MR angiographic techniques were not statistically significant (P = .31 and .29, .27 and .39, and .43 and .69 for readers 1 and 2, respectively). The quality scores for the segmental renal arteries were higher for phase-contrast VIPR than for contrast-enhanced MR angiography (P contrast-enhanced MR angiography and were statistically

  4. Application of Steenbeck's minimum principle for three-dimensional modelling of DC arc plasma torches

    CERN Document Server

    Li He Ping; Chen, X

    2003-01-01

    In this paper, physical/mathematical models for the three-dimensional, quasi-steady modelling of the plasma flow and heat transfer inside a non-transferred DC arc plasma torch are described in detail. The Steenbeck's minimum principle (Finkelnburg W and Maecker H 1956 Electric arcs and thermal plasmas Encyclopedia of Physics vol XXII (Berlin: Springer)) is employed to determine the axial position of the anode arc-root at the anode surface. This principle postulates a minimum arc voltage for a given arc current, working gas flow rate, and torch configuration. The modelling results show that the temperature and flow fields inside the DC non-transferred arc plasma torch show significant three-dimensional features. The predicted anode arc-root attachment position and the arc shape by employing Steenbeck's minimum principle are reasonably consistent with experimental observations. The thermal efficiency and the torch power distribution are also calculated in this paper. The results show that the thermal efficiency...

  5. A three-dimensional thermal abuse model for lithium-ion cells

    Science.gov (United States)

    Kim, Gi-Heon; Pesaran, Ahmad; Spotnitz, Robert

    To understand further the thermal abuse behavior of large format Li-ion batteries for automotive applications, the one-dimensional modeling approach formulated by Hatchard et al. [T.D. Hatchard, D.D. MacNeil, A. Basu, J.R. Dahn, J. Electrochem. Soc. 148(7) (2001) A755-A761] was reproduced. Then it was extended to three dimensions so we could consider the geometrical features, which are critical in large cells for automotive applications. The three-dimensional model captures the shapes and dimensions of cell components and the spatial distributions of materials and temperatures, and is used to simulate oven tests, and to determine how a local hot spot can propagate through the cell. In simulations of oven abuse testing of cells with cobalt oxide cathode and graphite anode with standard LiPF 6 electrolyte, the three-dimensional model predicts that thermal runaway will occur sooner or later than the lumped model, depending on the size of the cell. The model results showed that smaller cells reject heat faster than larger cells; this may prevent them from going into thermal runaway under identical abuse conditions. In simulations of local hot spots inside a large cylindrical cell, the three-dimensional model predicts that the reactions initially propagate in the azimuthal and longitudinal directions to form a hollow cylinder-shaped reaction zone.

  6. The correction of the distortion of human face based on three-dimensional modeling methods

    Science.gov (United States)

    Ye, Qingmin; Chen, Kuo; Feng, Huajun; Xu, Zhihai; Li, Qi

    2015-08-01

    When the human face is on the edge of field of the camera which has a large view, serious deformation will be captured. To correct the distortion of the human face, we present an approach based on setting up a 3D model. Firstly, we construct 3D target face modeling by using the data and depth information of the standard human face, which is set up by the three-dimensional model with three-dimensional Gaussian function with sectional type. According to the size of the face in the image and the parameters of the camera, we can obtain the information of relative position and depth of the human face. Then by translating the virtual camera axis to the center of the face, we can achieve the goal to correct the distortion of the face based on the theory of three-dimensional imaging. Finally, we have made a lot of experiments, and we study the influence of parameters of the 3D model of human face. The result indicates that the method presented by this paper can play an effective role in correcting the distortion of the face in the edge of the view, and we can get better results if the model appreciates the real human face.

  7. Numerical Simulation of Saline Intrusion and Purging in Long Sea Outfalls with Three-Dimensional Model

    Institute of Scientific and Technical Information of China (English)

    WU Wei; YAN Zhong-min; WU Long-hua

    2006-01-01

    Saline intrusion into marine sewage outfalls will greatly decrease the efficiency of sewage disposal. In order to investigate the mechanisms of this flow, in this paper, a three-dimensional numerical model based on FVM (Finite Volume Method) is established. The RNG k-ε model is selected for turbulence modeling. The time-averaged volume fraction equations are introduced to simulate the stratification and interfacial exchange of sewage and seawater in outfalls. Validity of the established three-dimensional numerical model is evaluated by comparisons of numerical results with experimental data. With this three-dimensional numerical model, the internal flow characteristics in outfalls for different sewage discharges are simulated. The results indicate that for a low sewage discharge, saline circulates in the outfall due to intrusion and both the inflowing momentum and the interfacial turbulent mixing are important mechanisms to extrude the saline. For a high sewage discharge, saline intrusion could be avoided. The inflow momentum is the main mechanism to extrude the saline and the interfacial turbulent mixing is not important relatively. Even at a high sewage discharge, the saline wedge would be retained in the main outfall pipe after the risers are purged. It takes a long time for this saline wedge to be extruded by interfacial turbulent mixing.

  8. Fan-shaped jets in three dimensional reconnection simulation as a model of ubiquitous solar jets

    CERN Document Server

    Jiang, Rong Lin; Isobe, Hiroaki; Fang, Cheng

    2010-01-01

    Magnetic reconnection is a fundamental process in space and astrophysical plasmas in which oppositely directed magnetic fields changes its connectivity and eventually converts its energy into kinetic and thermal energy of the plasma. Recently, ubiquitous jets (for example, chromospheric anemone jets, penumbral microjets, umbral light bridge jets) have been observed by Solar Optical Telescope on board the satellite Hinode. These tiny and frequently occurring jets are considered to be a possible evidence of small-scale ubiquitous reconnection in the solar atmosphere. However, the details of three dimensional magnetic configuration are still not very clear. Here we propose a new model based on three dimensional simulations of magnetic reconnection using a typical current sheet magnetic configuration with a strong guide field. The most interesting feature is that the jets produced by the reconnection eventually move along the guide field lines. This model provides a fresh understanding of newly discovered ubiquit...

  9. Three-Dimensional Modeling and Indoor Positioning for Urban Emergency Response

    Directory of Open Access Journals (Sweden)

    Xin Zhang

    2017-07-01

    Full Text Available Three-dimensional modeling of building environments and indoor positioning is essential for emergency response in cities. Traditional ground-based measurement methods, such as geodetic astronomy, total stations, and global positioning system (GPS receivers, cannot meet the demand for high precision positioning and it is therefore essential to conduct multiple-angle data-acquisition and establish three-dimensional spatial models. In this paper, a rapid modeling technology is introduced, which includes multiple-angle remote sensing image acquisition based on unmanned aerial vehicles (UAVs, an algorithm to remove linear and planar foregrounds before reconstructing the backgrounds, and a three-dimensional modeling (3DM framework. Additionally, an indoor 3DM technology is introduced based on building design drawings, and an indoor positioning technology is developed using iBeacon technology. Finally, a prototype system of the indoor and outdoor positioning-service system in an urban firefighting rescue scenario is introduced to demonstrate the value of the method proposed in this paper.

  10. An application of the three-dimensional q-deformed harmonic oscillator to the shell model

    Energy Technology Data Exchange (ETDEWEB)

    Raychev, P.P. [Dipartimento di Scienze Fisiche, Universita di Napoli ' Federico II' , Monte S Angelo, via Cintia, I-80125 Napoli (Italy); Institute for Nuclear Research and Nuclear Energy, Bulgarian Academy of Sciences, 72 Tzarigrad Road, BG-1784 Sofia (Bulgaria); Roussev, R.P.; Terziev, P.A. [Institute for Nuclear Research and Nuclear Energy, Bulgarian Academy of Sciences, 72 Tzarigrad Road, BG-1784 Sofia (Bulgaria); Lo Iudice, N. [Dipartimento di Scienze Fisiche, Universita di Napoli ' Federico II' , Monte S Angelo, via Cintia, I-80125 Napoli (Italy)

    1998-10-01

    A procedure for the construction of a q-deformed version of the Hamiltonian of the three-dimensional harmonic oscillator (HO), based on the application of q-deformed algebras, is presented. The spectrum of this Hamiltonian is not degenerated in the quantum number of the q-deformed angular momentum. The results together with their applicability to the shell model are compared with the predictions of the modified HO. (author)

  11. Three-dimensional optical metamaterials as model systems for longitudinal and transverse magnetic coupling.

    Science.gov (United States)

    Liu, Na; Giessen, Harald

    2008-12-22

    In this paper, we demonstrate that metamaterials represent model systems for longitudinal and transverse magnetic coupling in the optical domain. In particular, such coupling can lead to fully parallel or antiparallel alignment of the magnetic dipoles at the lowest frequency resonance. Also, we present the design scheme for constructing three-dimensional metamaterials with solely magnetic interaction. Our concept could pave the way for achieving rather complicated magnetic materials with desired arrangements of magnetic dipoles at optical frequencies.

  12. Three-dimensional simulations of phase separation in model binary alloy systems with elasticity

    Energy Technology Data Exchange (ETDEWEB)

    Orlikowski, D.; Roland, C. [North Carolina State Univ., Raleigh, NC (United States); Sagui, C. [McGill Univ., Montreal, Quebec (Canada). Dept. of Physics; Somoza, A.S. [Univ. de Murcia (Spain). Dept. de Fisica

    1998-12-31

    The authors report on large-scale three-dimensional simulations of phase separation in model binary alloy systems in the presence of elastic fields. The elastic field has several important effects on the morphology of the system: the ordered domains are subject to shape transformations, and spatial ordering. In contrast to two-dimensional system, no significant slowing down in the growth is observed. There is also no evidence of any reverse coarsening of the domains.

  13. An algorithm of multi-model spatial overlay based on three-dimensional terrain model TIN and its application

    Institute of Scientific and Technical Information of China (English)

    WANG Shao-an; ZHANG Zi-ping; GONG Jian-ya

    2001-01-01

    3D-GIS spatial overlay analysis is being broadly concerned about in in ternational academe and is a research focus. It is one of the important function s of spatial analysis using GIS technology. An algorithm of multi-model spatial overlay based on three-dimensional terrain model TIN is introduced in this pape r which can be used to solve the TIN-based three-dimensional overlay operation in spatial analysis. The feasibility and validity of this algorithm is identified. This algorithm is used successfully in three-dimensional overlay and region va riation overlay analysis.

  14. High performance computing for three-dimensional agent-based molecular models.

    Science.gov (United States)

    Pérez-Rodríguez, G; Pérez-Pérez, M; Fdez-Riverola, F; Lourenço, A

    2016-07-01

    Agent-based simulations are increasingly popular in exploring and understanding cellular systems, but the natural complexity of these systems and the desire to grasp different modelling levels demand cost-effective simulation strategies and tools. In this context, the present paper introduces novel sequential and distributed approaches for the three-dimensional agent-based simulation of individual molecules in cellular events. These approaches are able to describe the dimensions and position of the molecules with high accuracy and thus, study the critical effect of spatial distribution on cellular events. Moreover, two of the approaches allow multi-thread high performance simulations, distributing the three-dimensional model in a platform independent and computationally efficient way. Evaluation addressed the reproduction of molecular scenarios and different scalability aspects of agent creation and agent interaction. The three approaches simulate common biophysical and biochemical laws faithfully. The distributed approaches show improved performance when dealing with large agent populations while the sequential approach is better suited for small to medium size agent populations. Overall, the main new contribution of the approaches is the ability to simulate three-dimensional agent-based models at the molecular level with reduced implementation effort and moderate-level computational capacity. Since these approaches have a generic design, they have the major potential of being used in any event-driven agent-based tool. Copyright © 2016 Elsevier Inc. All rights reserved.

  15. Three-dimensional quasistatic model for high brightness beam dynamics simulation

    Science.gov (United States)

    Qiang, Ji; Lidia, Steve; Ryne, Robert D.; Limborg-Deprey, Cecile

    2006-04-01

    In this paper, we present a three-dimensional quasistatic model for high brightness beam dynamics simulation in rf/dc photoinjectors, rf linacs, and similar devices on parallel computers. In this model, electrostatic space-charge forces within a charged particle beam are calculated self-consistently at each time step by solving the three-dimensional Poisson equation in the beam frame and then transforming back to the laboratory frame. When the beam has a large energy spread, it is divided into a number of energy bins or slices so that the space-charge forces are calculated from the contribution of each bin and summed together. Image-charge effects from conducting photocathode are also included efficiently using a shifted-Green function method. For a beam with large aspect ratio, e.g., during emission, an integrated Green function method is used to solve the three-dimensional Poisson equation. Using this model, we studied beam transport in one Linac Coherent Light Sources photoinjector design through the first traveling wave linac with initial misalignment with respect to the accelerating axis.

  16. HOMOLOGY MODELING AND FUNCTIONAL CHARACTERIZATION OF THREE-DIMENSIONAL STRUCTURE OF DAHP SYNTHASE FROM BRACHYPODIUM DISTACHYON

    Directory of Open Access Journals (Sweden)

    Aditya Dev

    2013-06-01

    Full Text Available The Shikimate pathway is an attractive target for herbicides and antimicrobial agents because it is essential in microbes and plants but absent in animals. The 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHPS is the first enzyme of this pathway, which is involved in the condensation of phosphoenolpyruvate (PEP and D-erythrose 4-phosphate (E4P to produce 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP. DAHPS enzymes have been divided into two types, class I and class II, based on their primary amino acid sequence and three dimensional structures. The plant DAHPS belongs to class II and is regulated differently than DAHPS from microorganisms. To understand the structural basis of such differences in DAHPS from plants and its catalytic mechanism, we have used sequence analysis, homology modeling and docking approach to generate the three dimensional models of DAHP synthase from Brachypodium distachyon (Bd-DAHPS complexed with substrate PEP for the first time. The three dimensional models of Bd-DAHPS provides a detailed knowledge of the active site and the important secondary structural regions that play significant roles in the regulatory mechanism and further may be helpful for design of specific inhibitors towards herbicide development.

  17. Rapid Creation of Three-Dimensional, Tactile Models from Crystallographic Data

    Directory of Open Access Journals (Sweden)

    Nathan B. Fisher

    2016-01-01

    Full Text Available A method for the conversion of crystallographic information framework (CIF files to stereo lithographic data files suitable for printing on three-dimensional printers is presented. Crystallographic information framework or CIF files are capable of being manipulated in virtual space by a variety of computer programs, but their visual representations are limited to the two-dimensional surface of the computer screen. Tactile molecular models that demonstrate critical ideas, such as symmetry elements, play a critical role in enabling new students to fully visualize crystallographic concepts. In the past five years, major developments in three-dimensional printing has lowered the cost and complexity of these systems to a level where three-dimensional molecular models may be easily created provided that the data exists in a suitable format. Herein a method is described for the conversion of CIF file data using existing free software that allows for the rapid creation of inexpensive molecular models. This approach has numerous potential applications in basic research, education, visualization, and crystallography.

  18. Three dimensional loop quantum gravity: physical scalar product and spin foam models

    CERN Document Server

    Noui, K; Noui, Karim; Perez, Alejandro

    2004-01-01

    In this paper, we address the problem of the dynamics in three dimensional loop quantum gravity with zero cosmological constant. We construct a rigorous definition of Rovelli's generalized projection operator from the kinematical Hilbert space--corresponding to the quantization of the infinite dimensional kinematical configuration space of the theory--to the physical Hilbert space. In particular, we provide the definition of the physical scalar product which can be represented in terms of a sum over (finite) spin-foam amplitudes. Therefore, we establish a clear-cut connection between the canonical quantization of three dimensional gravity and spin-foam models. We emphasize two main properties of the result: first that no cut-off in the kinematical degrees of freedom of the theory is introduced (in contrast to standard `lattice' methods), and second that no ill-defined sum over spins (`bubble' divergences) are present in the spin foam representation.

  19. Three-dimensional loop quantum gravity: physical scalar product and spin-foam models

    Science.gov (United States)

    Noui, Karim; Perez, Alejandro

    2005-05-01

    In this paper, we address the problem of the dynamics in three-dimensional loop quantum gravity with zero cosmological constant. We construct a rigorous definition of Rovelli's generalized projection operator from the kinematical Hilbert space—corresponding to the quantization of the infinite-dimensional kinematical configuration space of the theory—to the physical Hilbert space. In particular, we provide the definition of the physical scalar product which can be represented in terms of a sum over (finite) spin-foam amplitudes. Therefore, we establish a clear-cut connection between the canonical quantization of three-dimensional gravity and spin-foam models. We emphasize two main properties of the result: first that no cut-off in the kinematical degrees of freedom of the theory is introduced (in contrast to standard 'lattice' methods), and second that no ill-defined sum over spins ('bubble' divergences) are present in the spin-foam representation.

  20. About Dark Energy and Dark Matter in a Three-Dimensional Quantum Vacuum Model

    Science.gov (United States)

    Fiscaletti, Davide

    2016-10-01

    A model of a three-dimensional quantum vacuum based on Planck energy density as a universal property of a granular space is suggested. The possibility to provide an unifying explanation of dark matter and dark energy as phenomena linked with the fluctuations of the three-dimensional quantum vacuum is explored. The changes and fluctuations of the quantum vacuum energy density generate a curvature of space-time similar to the curvature produced by a "dark energy" density. The formation of large scale structures in the universe associated to the flattening of the orbital speeds of the spiral galaxies can be explained in terms of primary fluctuations of the quantum vacuum energy density without attracting the idea of dark matter.

  1. Three-dimensional modelling of horizontal chemical vapor deposition. I - MOCVD at atmospheric pressure

    Science.gov (United States)

    Ouazzani, Jalil; Rosenberger, Franz

    1990-01-01

    A systematic numerical study of the MOCVD of GaAs from trimethylgallium and arsine in hydrogen or nitrogen carrier gas at atmospheric pressure is reported. Three-dimensional effects are explored for CVD reactors with large and small cross-sectional aspect ratios, and the effects on growth rate uniformity of tilting the susceptor are investigated for various input flow rates. It is found that, for light carrier gases, thermal diffusion must be included in the model. Buoyancy-driven three-dimensional flow effects can greatly influence the growth rate distribution through the reactor. The importance of the proper design of the lateral thermal boundary conditions for obtaining layers of uniform thickness is emphasized.

  2. Integration of a Three-Dimensional Process-Based Hydrological Model into the Object Modeling System

    Directory of Open Access Journals (Sweden)

    Giuseppe Formetta

    2016-01-01

    Full Text Available The integration of a spatial process model into an environmental modeling framework can enhance the model’s capabilities. This paper describes a general methodology for integrating environmental models into the Object Modeling System (OMS regardless of the model’s complexity, the programming language, and the operating system used. We present the integration of the GEOtop model into the OMS version 3.0 and illustrate its application in a small watershed. OMS is an environmental modeling framework that facilitates model development, calibration, evaluation, and maintenance. It provides innovative techniques in software design such as multithreading, implicit parallelism, calibration and sensitivity analysis algorithms, and cloud-services. GEOtop is a physically based, spatially distributed rainfall-runoff model that performs three-dimensional finite volume calculations of water and energy budgets. Executing GEOtop as an OMS model component allows it to: (1 interact directly with the open-source geographical information system (GIS uDig-JGrass to access geo-processing, visualization, and other modeling components; and (2 use OMS components for automatic calibration, sensitivity analysis, or meteorological data interpolation. A case study of the model in a semi-arid agricultural catchment is presented for illustration and proof-of-concept. Simulated soil water content and soil temperature results are compared with measured data, and model performance is evaluated using goodness-of-fit indices. This study serves as a template for future integration of process models into OMS.

  3. Three-dimensional pose estimation model for object with complex surface

    Directory of Open Access Journals (Sweden)

    Ronghua Li

    2015-02-01

    Full Text Available The proposed three-dimensional pose estimation model for object with complex surface, which primarily absorbs the essence of scale-invariant feature transform and iterative closest point algorithm, includes two steps, off-line and online. At first, two kinds of feature databases are established in the off-line operations. Then, the online process mainly has three steps. The first one is two-dimensional edge extraction from red–green–blue (RGB information based on scale-invariant feature transform algorithm. The second one is three-dimensional surface reconstruction from the previous two-dimensional edge and the depth information obtained from depth camera. The last one is three-dimensional pose estimation based on camera calibration and iterative closest point algorithm. The Kinect camera is selected as the information acquisition device which can produce red–green–blue information and depth information. In the experiment, the container twist-lock with complex surface is taken as the object. The result shows that the accuracy of the proposed model is very high.

  4. A Novel Three-Dimensional Mouse Embryonic Implantation Model In Vitro

    Institute of Scientific and Technical Information of China (English)

    SONG Yu-xuan; CAO Bin-yun

    2007-01-01

    To regenerate three-dimensional endometrium in vitro as a novel model for studying the mechanism of implantation of embryos, the luminal epithelial cells and stromal cells of the rabbit uterus were separated and cultured in vitro. The type Ⅰ mouse tail collagen was used as scaffolding material. The stromal cells were inoculated in the type Ⅰ mouse tail collagen, and the luminal epithelial cells were inoculated on the type Ⅰ mouse tail collagen to regenerate the endometrium in vitro. The regenerated endometrium was cultured in DMEM-F/12 media containing 100 nmol L-1 progesterone, 10 nM β-estradiol, and 10% fetal bovine serum (FBS) for 3 d. The media were then replaced with CZB containing 100 nM progesterone, 10 nmol L-1 β-estradiol, and 10% FBS, and the mouse blastulas were co-cultured with it. The results of scanning electronic micrography showed that the epithelial cells on the surface of the reconstructed endometrium were covered with numerous slender microvilli and some epithelial cells protruded pinopodes. After culturing for 12 h with the mouse blastula, the shedding, attachment, and implantation of the blastula were observed. The blastula can escape from zona pellucida and attach to the three-dimensional endometrium and is then implanted into it. Thisstudy showed that the reconstructed three-dimensional endometrium can serve as a robust embryo implantation model in vitro.

  5. Molecular Modeling of the Three-Dimensional Structure of Human Sphingomyelin Synthase%Molecular Modeling of the Three-Dimensional Structure of Human Sphingomyelin Synthase

    Institute of Scientific and Technical Information of China (English)

    张亚; 林赋; 邓晓东; 王任小; 叶德泳

    2011-01-01

    Sphingomyelin synthase (SMS) produces sphingomyelin and diacylglycerol from ceramide and phosphatidyl- choline. It plays an important role in cell survival and apoptosis, inflammation, and lipid homeostasis, and therefore has been noticed in recent years as a novel potential drug target. In this study, we combined homology modeling, molecular docking, molecular dynamics simulation, and normal mode analysis to derive a three-dimensional struc- ture of human sphingomyelin synthase (hSMS 1) in complex with sphingomyelin. Our model provides a reasonable explanation on the catalytic mechanism of hSMS 1. It can also explain the high selectivity of hSMS 1 towards phos- phocholine and sphingomyelin as well as some other known experimental results about hSMS1. Moreover, we also derived a complex model of D609, the only known small-molecule inhibitor of hSMS 1 so far. Our hSMS 1 model may serve as a reasonable structural basis for the discovery of more effective small-molecule inhibitors of hSMS 1.

  6. Three-dimensional force model of the low-back for simple computer programming.

    Science.gov (United States)

    Tracy, M F

    1990-08-01

    A three-dimensional static model is described to evaluate the forces on low-back muscles and on the spine during manual handling tasks and other forceful activities. It is simple to use either with a calculator or programmed onto a micro-computer, whilst being more accurate than existing simple models. Comparisons are made with a more sophisticated model that requires mathematical libraries and programming skills. As predictions are similar, so is the area of validity: the proposed model's accuracy is good for light tasks but poorer for strenuous ones.

  7. Penetration analytical model of three dimensional welding temperature field and experiment rectification

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A three-dimensional analytical model for heat conduction in a plate of finite size with a Gaussian distributed moving heat source, is obtained using the Heat Cumulating Principle and the Method of Image in arc welding, and an estimated method of back width of seam is introduced by making use of the model and the measured top face information of temperature field . To prove the validity of the model, a series of GTA bead-on-plate welding were performed on a medium carbon steel under various welding conditions, the experimental results show that the theoretical prediction can provide acceptable accuracy, so the next penetration control will be based on the model.

  8. Maintenance Optimization Model for One kind of Three-Dimensional Radar Antenna Array

    Science.gov (United States)

    Wang, Min; Yang, Jiang-ping; Wang, Yong-pan; Liu, Wei-jian

    2017-07-01

    For three-dimensional radar, maintenance cost is high and maintenance time is difficult to be determined. What’s more, model simulation computing is significantly complex. The subject of this paper is a new generation of meter wave active, phased array 3D radar. We put forth a concept that maintenance should be done after dividing into several regions to the asymmetrical distribution planar array antenna. First, a failure model of array elements is built to analyze the influence from the element to antenna. Second, the maintenance optimization model is established. Finally, computer simulations are conducted to verify the feasibility and effectiveness of the proposed model.

  9. Three-Dimensional Models for Analyzing the Cyclic Variations in a Lean Burn CNG Engine

    Institute of Scientific and Technical Information of China (English)

    LI Guo-xiu; YU Yu-song; LIU Jian-ying

    2007-01-01

    Three-dimensional models, consisting of the flame kernel formation model, flame kernel development model and natural gas single step reaction model, are used to analyze the contribution of cyclic equivalence ratio variations to cyclic variations in the compressed natural gas (CNG) lean burn spark ignition engine. Computational results including the contributions of equivalence ratio cyclic variations to each combustion stage and effects of engine speed to the extent of combustion variations are discussed. It is concluded that the equivalence ratio variations affect mostly the main stage of combustion and hardly influence initial kernel development stage.

  10. Explorable Three-Dimensional Digital Model of the Female Pelvis, Pelvic Contents, and Perineum for Anatomical Education

    Science.gov (United States)

    Sergovich, Aimee; Johnson, Marjorie; Wilson, Timothy D.

    2010-01-01

    The anatomy of the pelvis is complex, multilayered, and its three-dimensional organization is conceptually difficult for students to grasp. The aim of this project was to create an explorable and projectable stereoscopic, three-dimensional (3D) model of the female pelvis and pelvic contents for anatomical education. The model was created using…

  11. Three-dimensional in vitro cancer spheroid models for Photodynamic Therapy: Strengths and Opportunities

    Directory of Open Access Journals (Sweden)

    Conor L Evans

    2015-03-01

    Full Text Available Three dimensional, in vitro spheroid cultures offer considerable utility for the development and testing of anticancer photodynamic therapy regimens. More complex than monolayer cultures, three-dimensional spheroid systems replicate many of the important cell-cell and cell-matrix interactions that modulate treatment response in vivo. Simple enough to be grown by the thousands and small enough to be optically interrogated, spheroid cultures lend themselves to high-content and high-throughput imaging approaches. These advantages have enabled studies investigating photosensitizer uptake, spatiotemporal patterns of therapeutic response, alterations in oxygen diffusion and consumption during therapy, and the exploration of mechanisms that underlie therapeutic synergy. The use of quantitative imaging methods, in particular, has accelerated the pace of three-dimensional in vitro photodynamic therapy studies, enabling the rapid compilation of multiple treatment response parameters in a single experiment. Improvements in model cultures, the creation of new molecular probes of cell state and function, and innovations in imaging toolkits will be important for the advancement of spheroid culture systems for future photodynamic therapy studies.

  12. [Individualized three-dimensional finite element model of facial soft tissue and preliminary application in orthodontics].

    Science.gov (United States)

    Chen, Si; Xu, Tian-min; Lou, Hang-di; Rong, Qi-guo

    2012-12-01

    To get individualized facial three-dimensional finite element (FE) model from transformation of a generic one to assist orthodontic analysis and prediction of treatment-related morphological change of facial soft tissue. A generic three-dimensional FE model of craniofacial soft and hard tissue was constructed based on a volunteer's spiral CT data. Seven pairs of main peri-oral muscles were constructed based on a combination of CT image and anatomical method. Individualized model could be obtained through transformation of the generic model based on selection of corresponding anatomical landmarks and radial basis functions (RBF) method. Validation was analyzed through superimposition of the transformed model and cone-beam CT (CBCT) reconstruction data. Pre- and post-treatment CBCT data of two patients were collected, which were superimposed to gain the amount of anterior teeth retraction and anterior alveolar surface remodeling that could be used as boundary condition. Different values of Poisson ratio ν and Young's modulus E were tested during simulation. Average deviation was 0.47 mm and 0.75 mm in the soft and hard tissue respectively. It could be decreased to a range of +0.29 mm and -0.21 mm after a second transformation at the lip-mouth region. The best correspondence between simulation and post-treatment result was found with elastic properties of soft tissues defined as follows. Poisson ratio ν for skin, muscle and fat being set as 0.45 while Young's modulus being set as 90.0 kPa, 6.2 kPa and 2.0 kPa respectively. Individualized three-dimensional facial FE model could be obtained through mathematical model transformation. With boundary condition defined according to treatment plan such FE model could be used to analyze the effect of orthodontic treatment on facial soft tissue.

  13. THREE-DIMENSIONAL NON-HYDROSTATIC MODEL FOR FREE-SURFACE FLOWS WITH UNSTRUCTURED GRID

    Institute of Scientific and Technical Information of China (English)

    AI Cong-fang; JIN Sheng

    2008-01-01

    The three-dimensional Navier-Stokes equations were solved with the fractional step method where the hydrostatic pressure component was determined first, while the non-hydrostatic component of the pressure was computed from the pressure Poisson equation in which the coefficient matrix is positive definite and symmetric. The eddy viscosity was calculated from the efficient k-ε turbulence model. The resulting model is computationally efficient and unrestricted to the CFL condition. Computations with and without hydrostatic approximation were compared for the same cases to test the validity of the conventional hydrostatic pressure assumption. The model was verified against analytical solutions and experimental data, with excellent agreement.

  14. Three-Dimensional Heat Transfer Modeling of a Moving Plate in Forming Process Applications

    Science.gov (United States)

    Lavella, Mario; Maizza, Giovanni; Borgna, Massimo; Firrao, Donato

    2004-06-01

    A three-dimensional heat transfer model of glass plates heating and cooling has been developed to study their thermal tempering. The furnace being modeled is of a tunnel type, in which the glass plate alternates translational motions with back and forth mouvements with a specified law. An appropriate implementation of a moving (transient) convection/radiation boundary condition has been proposed to describe the heat transfer exchanged between the glass surfaces and the furnace environment. The model results have been experimentally validated by a scanning pyrometer which detects the pointwise temperature of the upper surface of the plate at the exit of the furnace.

  15. Use of three-dimensional medical modeling methods for precise planning of orthognathic surgery.

    Science.gov (United States)

    Mavili, Mehmet Emin; Canter, Halil Ibrahim; Saglam-Aydinatay, Banu; Kamaci, Soner; Kocadereli, Ilken

    2007-07-01

    Stereolithographic (medical rapid prototyping) biomodeling allows three-dimensional computed tomography to be used to generate solid plastic replicas of anatomic structures. Reports in the literature suggest that such biomodels may have a use in maxillofacial surgery, craniofacial surgery, orthopedics, neurosurgery, otology, vascular, and nasal research. A prospective trial to assess the usefulness of biomodeling in orthognathic surgery has been performed. In 12 patients with mandibular prognathism and/or maxillary retrusion, in addition to routine preoperative cephalometric analysis, preoperative high-resolution (cutting slice thickness of 1 mm) three-dimensional computed tomography scan of the patients was obtained. Raw data obtained from computed tomography scanning was processed with a Mimics 9.22 Software (Materialise's Interactive Medical Image Control System, Belgium). Fabrication of three-dimensional medical models was obtained through a process called powder depositional modeling by use of a Spectrum Z 510 3D Color Printer (Z Corporation, Burlington, MA). Alveolar arches of the maxilla and mandibula of the models were replaced with orthodontic dental cast models. Temporomandibular joints of the models were fixed with Kirschner wire. Maxillary and mandibular bony segments were mobilized according to preoperative orthodontic planning done by analysis of cephalometric plain radiographs. The relation between proximal and distal mandibular segments after bilateral sagittal split osteotomies were evaluated on models preoperatively. The same surgeon had a role in both model cutting preoperatively and as an instructor preoperatively. The same bony relation was observed both in preoperative modelsand in the perioperative surgical field in all patients. Condylar malpositioning was not observed in any of the patients. Studying preoperative planned movements of osteotomized bone segments and observing relations of osteotomized segments of mandibula and maxilla in

  16. Middle Cerebral Artery Atherosclerotic Plaques in Recent Small Subcortical Infarction: A Three-Dimensional High-resolution MR Study

    Directory of Open Access Journals (Sweden)

    Xiao-Dong Zou

    2015-01-01

    Full Text Available Purpose. Conventional two-dimensional vessel wall imaging has been used to depict the middle cerebral artery (MCA wall in patients with recent small subcortical infarctions (RSSIs. However, its clinical use has been limited by restricted spatial coverage, low signal-to-noise ratio (SNR, and long scan time. We used a novel three-dimensional high-resolution MR imaging (3D HR-MRI technique to investigate the presence, locations, and contrast-enhanced patterns of MCA plaques and their relationship with RSSI. Methods. Nineteen consecutive patients with RSSI but no luminal stenosis on MR angiography were prospectively enrolled. 3D HR-MRI was performed using a T1w-SPACE sequence at 3.0 T. The presence, locations, and contrast-enhanced patterns of the MCA plaques on the ipsilateral and contralateral sides to the RSSI were analyzed. Results. Eighteen patients successfully completed the study. MCA atherosclerotic plaques occurred more frequently on the ipsilateral than the contralateral side to the RSSI (72.2% versus 33.3%, P=0.044. The occurrence of superiorly located plaques was significantly higher on the ipsilateral than the contralateral side of the MCA (66.7% versus 27.8%; P=0.044. Conclusions. Superiorly located plaques are closely associated with RSSI. 3D high-resolution vessel wall imaging may be a potential tool for etiologic assessment of ischemic stroke.

  17. Heterocercal tail function in leopard sharks: a three-dimensional kinematic analysis of two models

    Science.gov (United States)

    Ferry; Lauder

    1996-01-01

    Two different models have been proposed to explain the function of the heterocercal tail in shark locomotion. The classical model proposes that, as a result of lift generated by the tail as it beats, the net force acting on the tail is directed dorsally and anteriorly. In contrast, Thomson's model suggests that the tail generates a net force directed through the shark's center of gravity, i.e. ventrally and anteriorly. In this study, we evaluate these two models by describing the three-dimensional kinematics of the heterocercal tail in the leopard shark Triakis semifasciata during swimming. Lateral and posterior views of the tail were examined from four individuals swimming in a flow tank at 1.2 L s-1 (where L is total length) using two high-speed video cameras filming simultaneously at 250 fields s-1. These two simultaneous views allowed eight landmarks on the tail to be followed in three dimensions through time. These landmarks allowed the tail to be divided into separate surfaces whose orientation over time was calculated. Points located anteriorly on the tail go through significantly smaller excursions and reach their maximum lateral excursion significantly earlier in the beat cycle than points on the trailing edge of the tail. Three-dimensional angle calculations show that the terminal lobe leads the ventral lobe through a beat, as predicted by the classical model. Dye-stream visualizations confirmed that this pattern of movement deflects water ventrally and posteriorly to the moving tail, providing strong support for the classical model. Additionally, our results show that a three-dimensional analysis is critical to understanding the function of the heterocercal tail.

  18. Three-dimensional modeling of supine human and transport system under whole-body vibration.

    Science.gov (United States)

    Wang, Yang; Rahmatalla, Salam

    2013-06-01

    The development of predictive computer human models in whole-body vibration has shown some success in predicting simple types of motion, mostly for seated positions and in the uniaxial vertical direction. The literature revealed only a handful of papers that tackled supine human modeling in response to vertical vibration. The objective of this work is to develop a predictive, multibody, three-dimensional human model to simulate the supine human and underlying transport system in response to multidirectional whole-body vibration. A three-dimensional dynamic model of a supine human and its underlying transport system is presented in this work to predict supine-human biodynamic response under three-dimensional input random whole-body vibration. The proposed supine-human model consists of three interconnected segments representing the head, torso-arms, and pelvis-legs. The segments are connected via rotational and translational joints that have spring-damper components simulating the three-dimensional muscles and tissuelike connecting elements in the three x, y, and z directions. Two types of transport systems are considered in this work, a rigid support and a long spinal board attached to a standard military litter. The contact surfaces between the supine human and the underlying transport system are modeled using spring-damper components. Eight healthy supine human subjects were tested under combined-axis vibration files with a magnitude of 0.5 m/s2 (rms) and a frequency content of 0.5-16 Hz. The data from seven subjects were used in parameter identification for the dynamic model using optimization schemes in the frequency domain that minimize the differences between the magnitude and phase of the predicted and experimental transmissibility. The predicted accelerations in the time and frequency domains were comparable to those gathered from experiments under different anthropometric, input vibration, and transport conditions under investigation. Based on the

  19. [Three-dimensional morphological modeling and visualization of wheat root system].

    Science.gov (United States)

    Tan, Feng; Tang, Liang; Hu, Jun-Cheng; Jiang, Hai-Yan; Cao, Wei-Xing; Zhu, Yan

    2011-01-01

    Crop three-dimensional (3D) morphological modeling and visualization is an important part of digital plant study. This paper aimed to develop a 3D morphological model of wheat root system based on the parameters of wheat root morphological features, and to realize the visualization of wheat root growth. According to the framework of visualization technology for wheat root growth, a 3D visualization model of wheat root axis, including root axis growth model, branch geometric model, and root axis curve model, was developed firstly. Then, by integrating root topology, the corresponding pixel was determined, and the whole wheat root system was three-dimensionally re-constructed by using the morphological feature parameters in the root morphological model. Finally, based on the platform of OpenGL, and by integrating the technologies of texture mapping, lighting rendering, and collision detection, the 3D visualization of wheat root growth was realized. The 3D output of wheat root system from the model was vivid, which could realize the 3D root system visualization of different wheat cultivars under different water regimes and nitrogen application rates. This study could lay a technical foundation for further development of an integral visualization system of wheat plant.

  20. Spin transport in the frustrated anisotropic three-dimensional XY model

    Science.gov (United States)

    Lima, L. S.

    2016-12-01

    We use the SU(3) Schwinger's boson theory to study the spin transport in the frustrated anisotropic three-dimensional XY model at T=0 with single ion anisotropy. We have investigated the behavior of the spin conductivity for this model that presents exchange interactions J1, J2 and J ‧ . We study the spin transport in the Bose-Einstein regime where we have that the tz bosons are condensed i.e. = = t . Our results show a metallic spin transport for ω > 0 and a superconductor spin transport in the limit of DC conductivity.

  1. Three-dimensional fluid and electrodynamic modeling for MHD DCW channels

    Science.gov (United States)

    Liu, B. L.; Lineberry, J. T.; Schmidt, H. J.

    1983-01-01

    A three dimensional, numerical solution for modeling diagonal conducting wall (DCW) magnetohydrodynamic (MHD) generators is developed and discussed. Cross plane gasdynamic and electrodynamic profiles are computed considering coupled MHD flow and electrical phenomena. A turbulent transport model based on the mixing length theory is used to deal with wall roughness generated turbulence effects. The infinitely fine electrode segmentation formulation is applied to simplify the governing electrical equations. Calculations show the development of distorted temperature and velocity profiles under influence of magnetohydrodynamic interaction. Since both sidewall and electrode wall boundary losses are treated, the results furnish a realistic representation of MHD generator behavior.

  2. A numerical code for a three-dimensional magnetospheric MHD equilibrium model

    Science.gov (United States)

    Voigt, G.-H.

    1992-01-01

    Two dimensional and three dimensional MHD equilibrium models were begun for Earth's magnetosphere. The original proposal was motivated by realizing that global, purely data based models of Earth's magnetosphere are inadequate for studying the underlying plasma physical principles according to which the magnetosphere evolves on the quasi-static convection time scale. Complex numerical grid generation schemes were established for a 3-D Poisson solver, and a robust Grad-Shafranov solver was coded for high beta MHD equilibria. Thus, the effects were calculated of both the magnetopause geometry and boundary conditions on the magnetotail current distribution.

  3. Smarr formula for BTZ black holes in general three-dimensional gravity models

    Science.gov (United States)

    Liang, Chao; Gong, Li; Zhang, Baocheng

    2017-02-01

    Recent studies have presented the interpretation of thermodynamic enthalpy for the mass of BTZ black holes and the corresponding Smarr formula. All these are made in the background of three-dimensional (3D) general relativity. In this paper, we extend such interpretation into general 3D gravity models. It is found that the direct extension is unfeasible and some extra conditions are required to preserve both the Smarr formula and the first law of black hole thermodynamics. Thus, BTZ black hole thermodynamics enforces some constraints for general 3D gravity models, and these constraints are consistent with all previous discussions.

  4. Three-Dimensional Model for Preservation and Restoration of Architectural Heritage

    Science.gov (United States)

    Marchis, Elena

    2011-01-01

    Thc aim of the research will be to create a model, three-dimensional mathematical. implementation. consultation and assistance to "large" restoration projects that will assist the structural analysis, allowing easier display of dynamic strain. analysis and lighting noise. It could also be a valuable tool for decision support. therefore. may simulate several possible scenarios for intervention, This model appears therefore an excellent support for recovering. ordering and monitoring information about materials and data (stage of restoration. photographs. sampling points. results of diagnostic tests, etc.) collected dynamically during the "life" of the cultural heritage. allowing to document its complete history

  5. Three-dimensional in vitro co-culture model of breast tumor using magnetic levitation.

    Science.gov (United States)

    Jaganathan, Hamsa; Gage, Jacob; Leonard, Fransisca; Srinivasan, Srimeenakshi; Souza, Glauco R; Dave, Bhuvanesh; Godin, Biana

    2014-10-01

    In this study, we investigate a novel in vitro model to mimic heterogeneous breast tumors without the use of a scaffold while allowing for cell-cell and tumor-fibroblast interactions. Previous studies have shown that magnetic levitation system under conventional culturing conditions results in the formation of three-dimensional (3D) structures, closely resembling in vivo tissues (fat tissue, vasculature, etc.). Three-dimensional heterogeneous tumor models for breast cancer were designed to effectively model the influences of the tumor microenvironment on drug efficiency. Various breast cancer cells were co-cultured with fibroblasts and then magnetically levitated. Size and cell density of the resulting tumors were measured. The model was phenotypically compared to in vivo tumors and examined for the presence of ECM proteins. Lastly, the effects of tumor stroma in the 3D in vitro model on drug transport and efficiency were assessed. Our data suggest that the proposed 3D in vitro breast tumor is advantageous due to the ability to: (1) form large-sized (millimeter in diameter) breast tumor models within 24 h; (2) control tumor cell composition and density; (3) accurately mimic the in vivo tumor microenvironment; and (4) test drug efficiency in an in vitro model that is comparable to in vivo tumors.

  6. Three Dimensional Modeling via Photographs for Documentation of a Village Bath

    Science.gov (United States)

    Balta, H. B.; Hamamcioglu-Turan, M.; Ocali, O.

    2013-07-01

    The aim of this study is supporting the conceptual discussions of architectural restoration with three dimensional modeling of monuments based on photogrammetric survey. In this study, a 16th century village bath in Ulamış, Seferihisar, and Izmir is modeled for documentation. Ulamış is one of the historical villages within which Turkish population first settled in the region of Seferihisar - Urla. The methodology was tested on an antique monument; a bath with a cubical form. Within the limits of this study, only the exterior of the bath was modeled. The presentation scale for the bath was determined as 1 / 50, considering the necessities of designing structural interventions and architectural ones within the scope of a restoration project. The three dimensional model produced is a realistic document presenting the present situation of the ruin. Traditional plan, elevation and perspective drawings may be produced from the model, in addition to the realistic textured renderings and wireframe representations. The model developed in this study provides opportunity for presenting photorealistic details of historical morphologies in scale. Compared to conventional drawings, the renders based on the 3d models provide an opportunity for conceiving architectural details such as color, material and texture. From these documents, relatively more detailed restitution hypothesis can be developed and intervention decisions can be taken. Finally, the principles derived from the case study can be used for 3d documentation of historical structures with irregular surfaces.

  7. A method for three-dimensional quantification of vascular smooth muscle orientation: application in viable murine carotid arteries.

    Science.gov (United States)

    Spronck, Bart; Megens, Remco T A; Reesink, Koen D; Delhaas, Tammo

    2016-04-01

    When studying in vivo arterial mechanical behaviour using constitutive models, smooth muscle cells (SMCs) should be considered, while they play an important role in regulating arterial vessel tone. Current constitutive models assume a strictly circumferential SMC orientation, without any dispersion. We hypothesised that SMC orientation would show considerable dispersion in three dimensions and that helical dispersion would be greater than transversal dispersion. To test these hypotheses, we developed a method to quantify the 3D orientation of arterial SMCs. Fluorescently labelled SMC nuclei of left and right carotid arteries of ten mice were imaged using two-photon laser scanning microscopy. Arteries were imaged at a range of luminal pressures. 3D image processing was used to identify individual nuclei and their orientations. SMCs showed to be arranged in two distinct layers. Orientations were quantified by fitting a Bingham distribution to the observed orientations. As hypothesised, orientation dispersion was much larger helically than transversally. With increasing luminal pressure, transversal dispersion decreased significantly, whereas helical dispersion remained unaltered. Additionally, SMC orientations showed a statistically significant (p < 0.05) mean right-handed helix angle in both left and right arteries and in both layers, which is a relevant finding from a developmental biology perspective. In conclusion, vascular SMC orientation (1) can be quantified in 3D; (2) shows considerable dispersion, predominantly in the helical direction; and (3) has a distinct right-handed helical component in both left and right carotid arteries. The obtained quantitative distribution data are instrumental for constitutive modelling of the artery wall and illustrate the merit of our method.

  8. Numerical Simulation on Hydromechanical Coupling in Porous Media Adopting Three-Dimensional Pore-Scale Model

    Science.gov (United States)

    Liu, Jianjun; Song, Rui; Cui, Mengmeng

    2014-01-01

    A novel approach of simulating hydromechanical coupling in pore-scale models of porous media is presented in this paper. Parameters of the sandstone samples, such as the stress-strain curve, Poisson's ratio, and permeability under different pore pressure and confining pressure, are tested in laboratory scale. The micro-CT scanner is employed to scan the samples for three-dimensional images, as input to construct the model. Accordingly, four physical models possessing the same pore and rock matrix characteristics as the natural sandstones are developed. Based on the micro-CT images, the three-dimensional finite element models of both rock matrix and pore space are established by MIMICS and ICEM software platform. Navier-Stokes equation and elastic constitutive equation are used as the mathematical model for simulation. A hydromechanical coupling analysis in pore-scale finite element model of porous media is simulated by ANSYS and CFX software. Hereby, permeability of sandstone samples under different pore pressure and confining pressure has been predicted. The simulation results agree well with the benchmark data. Through reproducing its stress state underground, the prediction accuracy of the porous rock permeability in pore-scale simulation is promoted. Consequently, the effects of pore pressure and confining pressure on permeability are revealed from the microscopic view. PMID:24955384

  9. A three-dimensional model of fungal morphogenesis based on the vesicle supply center concept.

    Science.gov (United States)

    Gierz, G; Bartnicki-Garcia, S

    2001-01-21

    We developed a three-dimensional model of hyphal morphogenesis under the same basic assumption used for the construction of a two-dimensional model. Namely, that the polarized growth of tubular cells (hyphoids) arises from a gradient of wall-building vesicles generated by a vesicle supply center (VSC). Contrary to the 2-D mathematical formulation, the three-dimensional derivation led to an indetermination whose solution required defining a priori the pattern of expansion of the wall, i.e. defining the overall spatial movement of the wall as the newly inserted wall elements displace the existing wall fabric. The patterns of wall expansion can be described by tracing the movement of marker points on the cell surface (point trajectories). Point trajectories were computed for three different modes of wall expansion of the VSC-generated hyphoids: orthogonal, isometric, and rotational. The 3-D VSC models allowed us to either stipulate or calculate the degree of anisotropy for each type of wall expansion. Wireframe models were built to visualize growth anisotropy in each model. Although the overall shape of the three hyphoid models is similar, they differ substantially in point trajectories and anisotropy. Point trajectories are experimentally testable and were the basis for the conclusion that hyphae grow in orthogonal fashion. (Bartnicki-Garcia et al., 2000. Biophys. J.79, 2382-2390.)

  10. Quasi-three-dimensional refined modelling of turbulent flow and water quality in coastal waters

    Institute of Scientific and Technical Information of China (English)

    沈永明; 李玉成; AllenT.CHWANG

    1996-01-01

    The water quality in Victoria Harbour.Hong Kong is dominated by strong seasonal effects resulting from the variation in freshwater discharge into the Pearl Estuary.The quasi-three-dimensional water quality model has been developed to simulate the variations in water quality and the ecosystem in the harbour.The model is unique in that it completely integrates the refined modelling of the hydrodynamics,biochemical reactions and the ecosystem in the harbour.It is a quasi-three-dimensional segmented model which is capable of resolving mean daily variations in all the parameters relevant to pollution control.It predicts daily fluctuations in the oxygen content at different depths in water throughout the year.It takes into account transport and settling of pollutant particles.It predicts light penetration from computed turbidity variations.It includes interactions between the ecosystem and water quality,through nutrient cycling and photosynthesis.The model has been calibrated well against the data set of hist

  11. Verification and Validation of a Three-Dimensional Orthotropic Plasticity Constitutive Model Using a Unidirectional Composite

    Directory of Open Access Journals (Sweden)

    Canio Hoffarth

    2017-03-01

    Full Text Available A three-dimensional constitutive model has been developed for modeling orthotropic composites subject to impact loads. It has three distinct components—a deformation model involving elastic and plastic deformations; a damage model; and a failure model. The model is driven by tabular data that is generated either using laboratory tests or via virtual testing. A unidirectional composite—T800/F3900, commonly used in the aerospace industry, is used in the verification and validation tests. While the failure model is under development, these tests indicate that the implementation of the deformation and damage models in a commercial finite element program, LS-DYNA, is efficient, robust and accurate.

  12. Quasi-three-dimensional modelling of the morphology of longshore bars

    DEFF Research Database (Denmark)

    Dronen, N.; Deigaard, Rolf

    2007-01-01

    A morphological quasi-three-dimensional (Q3D) area model for bar-red coasts has been developed. The model combines a two-dimensional depth integrated model for wave-driven currents with a model for under-tow circulation currents. The combined model makes a simultaneous simulation of the bar......-forming processes associated with the undertow and the horizontal wave-driven circulation currents, which may cause instabilities of the bar and the formation of rip channels. Situations with normal and oblique wave incidence are considered. Compared to the depth integrated approach the Q3D model produces less...... pronounced alongshore irregularities for obliquely incident waves. For normal incident waves the Q3D model produces a crescentic bar while the depth integrated model predicts almost straight sections of the bar interrupted by rip channels. The sensitivity to variation of wave angle and beach slope is further...

  13. Nonperturbative renormalization group in light-front three-dimensional real scalar model

    CERN Document Server

    Sugihara, T; Sugihara, Takanori; Yahiro, Masanobu

    1997-01-01

    The three-dimensional real scalar model, in which the $Z_2$ symmetry spontaneously breaks, is renormalized in a nonperturbative manner based on the Tamm-Dancoff truncation of the Fock space. A critical line is calculated by diagonalizing the Hamiltonian regularized with basis functions. In the broken phase the canonical Hamiltonian is tachyonic, so the field is shifted as running mass and coupling so that the mass of the ground state vanishes. The marginal ($\\phi^6$) coupling dependence of the critical line is weak.

  14. Chaos Control in Three Dimensional Cancer Model by State Space Exact Linearization Based on Lie Algebra

    Directory of Open Access Journals (Sweden)

    Mohammad Shahzad

    2016-05-01

    Full Text Available This study deals with the control of chaotic dynamics of tumor cells, healthy host cells, and effector immune cells in a chaotic Three Dimensional Cancer Model (TDCM by State Space Exact Linearization (SSEL technique based on Lie algebra. A non-linear feedback control law is designed which induces a coordinate transformation thereby changing the original chaotic TDCM system into a controlled one linear system. Numerical simulation has been carried using Mathematica that witness the robustness of the technique implemented on the chosen chaotic system.

  15. Finite-size scaling study of the three-dimensional classical Heisenberg model

    CERN Document Server

    Holm, C; Holm, Christian; Janke, Wolfhard

    1993-01-01

    We use the single-cluster Monte Carlo update algorithm to simulate the three-dimensional classical Heisenberg model in the critical region on simple cubic lattices of size $L^3$ with $L=12, 16, 20, 24, 32, 40$, and $48$. By means of finite-size scaling analyses we compute high-precision estimates of the critical temperature and the critical exponents, using extensively histogram reweighting and optimization techniques. Measurements of the autocorrelation time show the expected reduction of critical slowing down at the phase transition. This allows simulations on significantly larger lattices than in previous studies and consequently a better control over systematic errors in finite-size scaling analyses.

  16. Three-dimensional Simulation and Pattern Making of Collar Using Geometric Model

    Institute of Scientific and Technical Information of China (English)

    Zhang Mingjie(张明杰); Hou Dongyu(侯东昱); Zhou Aiying(周爱英); Yoshio Shimizu

    2001-01-01

    An algorithm is presented for computationally simulating collars and drafting patterns. The collar shape was modeled by three-dimensional Bezier patch. Changing the position of consol points of the patch can interactively control the collar shape. Using triangular surface developing method, patterns of various styles of stand collar and separating collar were drafted. As the subsystem of 3D apparel design system, an interactive collar design system is constructed. To inspect the practical usage, we reproduced the collars using these patterns drafted by the interactive collar design system.Comparing with simulated collars, the system demonstrated well and we found it is more reliable and accurate than the method of handwork.

  17. Critical behaviour and scaling functions of the three-dimensional O(6) model

    CERN Document Server

    Holtmann, S; Schulze, Thomas

    2003-01-01

    We numerically investigate the three-dimensional O(6) model on 12^3 to 120^3 lattices within the critical region at zero magnetic field, as well as at finite magnetic field on the critical isotherm and for several fixed couplings in the broken and the symmetric phase. We obtain from the Binder cumulant at vanishing magnetic field the critical coupling J_c=1.42865(3). The universal value of the Binder cumulant at this point is g_r(J_c)=-1.94456(10). At the critical coupling, the critical exponents \\gamma=1.604(6), \\beta=0.425(2) and \

  18. Two- and three-dimensional models for analysis of optical absorption in tungsten disulphide single crystals

    Indian Academy of Sciences (India)

    Dhairya A Dholakia; G K Solanki; S G Patel; M K Agarwal

    2001-06-01

    The optical energy gaps of WS2 single crystal were determined from the analysis of the absorption spectrum near the fundamental absorption edge at room temperature using light parallel to -axis incident normally on the basal plane. On the basis of two- and three-dimensional models it was found that both direct and indirect band transitions took place in WS2 and the indirect transition was of the allowed type. The optical energy gaps corresponding to both transitions were determined and the phonon energies associated with the indirect transitions estimated. The implications of the results have been discussed.

  19. Anomalous magnetic moment of anyons in three dimensional CP$^{N-1}$ model

    CERN Document Server

    Hong, D K; Hong, Deog Ki; Kim, Jin Young

    1995-01-01

    We calculate the anomalous magnetic moment of anyons in three dimensional CP^{N-1} model with a Chern-Simons term in various limits in 1/N expansion. We have found that for anyons of infinite mass the gyromagnetic ratio (g-factor) is 2 up to the next-to-leading order in 1/N. Our result supports a recent claim that the g-factor of nonrelativistic anyons is exactly two. We also found that for -{8\\over\\pi }<\\theta<0, the electromagnetic interation between two identical aynons of large mass are attractive.

  20. Development of three-dimensional numerical model for combustion-flow in interior ballistics

    Energy Technology Data Exchange (ETDEWEB)

    Jang, Jin Sung; Oh, Seok Hawn; Roh, Tae Seong [Inha University, Incheon (Korea, Republic of)

    2016-04-15

    Interior ballistics analysis is required for the development of the gun system. Interior ballistics is a complex phenomenon containing the propellant combustion and gas flow and is completed in tens of milliseconds during gun firing. Thus, some data cannot be directly measured by experiment. Numerical analysis is therefore traditionally used to understand the complex gun firing phenomena. In previous studies, the two-dimensional axisymmetric numerical method for interior ballistics using the Eulerian-Lagrangian approach has been developed. There are some limits in depicting the actual phenomena with two-dimensional models. Therefore, a three-dimensional numerical model has been built in the present study. Unlike the conventional method, the calculation has been conducted by separating the physical phenomena into the combustion part and the flow part for simplicity and efficiency. The internal flow in the gun barrel has been calculated by using the STAR-CCM+ and the source terms produced by the propellant combustion has been computed by utilizing the existing code. The developed numerical model has been compared with the AGARD gun results and the simulation of 40 mm gun firings. The reliability of the developed model has been confirmed because the results of the numerical analysis greatly agree with the simulation results. The basis of the three-dimensional analysis of the interior ballistics has been formed through this study.

  1. Electronic transport on the spatial structure of the protein: Three-dimensional lattice model

    Energy Technology Data Exchange (ETDEWEB)

    Sarmento, R.G. [Departamento de Ciências Biológicas, Universidade Federal do Piauí, 64800-000 Floriano, PI (Brazil); Frazão, N.F. [Centro de Educação e Saúde, Universidade Federal de Campina Grande, 581750-000 Cuité, PB (Brazil); Macedo-Filho, A., E-mail: amfilho@gmail.com [Campus Prof. Antonio Geovanne Alves de Sousa, Universidade Estadual do Piauí, 64260-000 Piripiri, PI (Brazil)

    2017-01-30

    Highlights: • The electronic transport on the structure of the three-dimensional lattice model of the protein is studied. • The signing of the current–voltage is directly affected by permutations of the weak bonds in the structure. • Semiconductor behave of the proteins suggest a potential application in the development of novel biosensors. - Abstract: We report a numerical analysis of the electronic transport in protein chain consisting of thirty-six standard amino acids. The protein chains studied have three-dimensional structure, which can present itself in three distinct conformations and the difference consist in the presence or absence of thirteen hydrogen-bondings. Our theoretical method uses an electronic tight-binding Hamiltonian model, appropriate to describe the protein segments modeled by the amino acid chain. We note that the presence and the permutations between weak bonds in the structure of proteins are directly related to the signing of the current–voltage. Furthermore, the electronic transport depends on the effect of temperature. In addition, we have found a semiconductor behave in the models investigated and it suggest a potential application in the development of novel biosensors for molecular diagnostics.

  2. Three-Dimensional Transient Electromagnetic Modeling Based on Fictitious Wave Domain Methods

    Science.gov (United States)

    Ji, Yanju; Hu, Yanpu; Imamura, Naoto

    2017-05-01

    Finite-difference time domain (FDTD) methods, which have been widely employed in three-dimensional transient electromagnetic (TEM) modeling, require very small time steps to simulate the electromagnetic fields and this will be time consuming. We present an efficient numerical method for three-dimensional TEM forward modeling. Its key features are based on a correspondence principle between the diffusive and fictitious wave fields. The diffusive Maxwell's equations are transformed and solved in a so-called fictitious wave domain. This scheme allows larger time steps than conventional FDTD methods, allows including air layers, and allows simulating topography. The need for initial field calculations is avoided by including an electric current source in the governing equations. This also avoids a traditional assumption of a flat earth surface in TEM modeling. We test the accuracy of the electromagnetic fields' responses using our method with the spectral differential difference (SLDM) solutions. The results show good agreement even under the existence of air layers and topography in the model.

  3. Three-dimensional delayed-detonation models with nucleosynthesis for Type Ia supernovae

    CERN Document Server

    Seitenzahl, Ivo R; Roepke, Friedrich K; Fink, Michael; Hillebrandt, Wolfgang; Kromer, Markus; Pakmor, Ruediger; Ruiter, Ashley J; Sim, Stuart A; Taubenberger, Stefan

    2012-01-01

    We present results for a suite of fourteen three-dimensional, high resolution hydrodynamical simulations of delayed-detonation modelsof Type Ia supernova (SN Ia) explosions. This model suite comprises the first set of three-dimensional SN Ia simulations with detailed isotopic yield information. As such, it may serve as a database for Chandrasekhar-mass delayed-detonation model nucleosynthetic yields and for deriving synthetic observables such as spectra and light curves. We employ a physically motivated, stochastic model based on turbulent velocity fluctuations and fuel density to calculate in situ the deflagration to detonation transition (DDT) probabilities. To obtain different strengths of the deflagration phase and thereby different degrees of pre-expansion, we have chosen a sequence of initial models with 1, 3, 5, 10, 20, 40, 100, 150, 200, 300, and 1600 (two different realizations) ignition kernels in a hydrostatic white dwarf with central density of 2.9 x 10^9 gcc, plus in addition one high central den...

  4. Experiment and simulation study on construction of a three-dimensional network model

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    The construction of a network model is one of the key techniques in organic com-bination of microscopic flow experiment and simulation. The construction method of a three-dimensional network model is presented on the basis of CT scanning images in this paper. A series of CT slice images describing microscopic pore structure and fluid distribution of actual rock is obtained with the help of the in-dustrial microfocus CT system. Based on the extraction of pore space skeleton, pore and throat information, the corresponding network model is established, and the conversion from three-dimensional CT image information to pore-throat size distribution and topological information is also achieved. The feature of this me-thod lies in the fact that complicated pore space of rock may be characterized by pores and throats with a simple shape while keeping the geometry and flow char-acteristics. It is indicated that the calculated results of porosity, permeability, rela-tive permeability curve and microscopic remaining oil distribution match very well the experimental results of water flooding and polymer flooding. This network model may fairly well characterize the rock microscopic pore-throat size and topo-logical characteristics.

  5. Three-dimensional conceptual model for the Hanford Site unconfined aquifer system: FY 1994 status report

    Energy Technology Data Exchange (ETDEWEB)

    Thorne, P.D.; Chamness, M.A.; Vermeul, V.R.; Macdonald, Q.C.; Schubert, S.E.

    1994-11-01

    This report documents work conducted during the fiscal year 1994 to development an improved three-dimensional conceptual model of ground-water flow in the unconfined aquifer system across the Hanford Site Ground-Water Surveillance Project, which is managed by Pacific Northwest Laboratory. The main objective of the ongoing effort to develop an improved conceptual model of ground-water flow is to provide the basis for improved numerical report models that will be capable of accurately predicting the movement of radioactive and chemical contaminant plumes in the aquifer beneath Hanford. More accurate ground-water flow models will also be useful in assessing the impacts of changes in facilities and operations. For example, decreasing volumes of operational waste-water discharge are resulting in a declining water table in parts of the unconfined aquifer. In addition to supporting numerical modeling, the conceptual model also provides a qualitative understanding of the movement of ground water and contaminants in the aquifer.

  6. Parameterized Designing of Gears' Three-dimensional Model Based on Pro/E

    Institute of Scientific and Technical Information of China (English)

    WANG Zhihui; CHEN Jing; SUN Yaomin

    2006-01-01

    This paper took Pro/ENGINEER wildfire2.0 as the development environment and realized the involute helical gears' three-dimensional model parameterized designing which made use of the parameter and relation function of Pro/E. This paper also provided a method of editing the equation of the tooth curve. and it can ensure the high precision of the involute helical gear model. It developed the man-machine interactive parameterized designing interface making use of the secondary development function offered by Pro/TOOLKIT. The users can revise the involute helical gear easily by this man-machine interactive. It detailedly introduced the method of designing the man-machine interactive interface Using Pro/TOOLKIT and Visual C++. When the users input correlation parameters according to the prompt of the man-machine interactive interface, the three-dimensional model of the involute helical gear is auto-generated. This method simplified the product design process, shortened the period of developing and improved the design efficiency of the gear greatly.

  7. A three-dimensional nonlinear reduced-order predictive joint model

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Mechanical joints can have significant effects on the dynamics of assembled structures. However, the lack of efficacious predictive dynamic models for joints hinders accurate prediction of their dynamic behavior. The goal of our work is to develop physics-based, reduced-order, finite element models that are capable of replicating the effects of joints on vibrating structures. The authors recently developed the so-called two-dimensional adjusted Iwan beam element (2-D AIBE) to simulate the hysteretic behavior of bolted joints in 2-D beam structures. In this paper, 2-D AIBE is extended to three-dimensional cases by formulating a three-dimensional adjusted Iwan beam element (3-D AIBE). Impulsive loading experiments are applied to a jointed frame structure and a beam structure containing the same joint. The frame is subjected to excitation out of plane so that the joint is under rotation and single axis bending. By assuming that the rotation in the joint is linear elastic, the parameters of the joint associated with bending in the frame are identified from acceleration responses of the jointed beam structure, using a multi-layer feed-forward neural network (MLFF). Numerical simulation is then performed on the frame structure using the identified parameters. The good agreement between the simulated and experimental impulsive acceleration responses of the frame structure validates the efficacy of the presented 3-D AIBE, and indicates that the model can potentially be applied to more complex structural systems with joint parameters identified from a relatively simple structure.

  8. A three-dimensional meso-macroscopic model for Li-Ion intercalation batteries

    Science.gov (United States)

    Allu, S.; Kalnaus, S.; Simunovic, S.; Nanda, J.; Turner, J. A.; Pannala, S.

    2016-09-01

    In this paper we present a three-dimensional computational formulation for electrode-electrolyte-electrode system of Li-Ion batteries. The physical consistency between electrical, thermal and chemical equations is enforced at each time increment by driving the residual of the resulting coupled system of nonlinear equations to zero. The formulation utilizes a rigorous volume averaging approach typical of multiphase formulations used in other fields and recently extended to modeling of supercapacitors [1]. Unlike existing battery modeling methods which use segregated solution of conservation equations and idealized geometries, our unified approach can model arbitrary battery and electrode configurations. The consistency of multi-physics solution also allows for consideration of a wide array of initial conditions and load cases. The formulation accounts for spatio-temporal variations of material and state properties such as electrode/void volume fractions and anisotropic conductivities. The governing differential equations are discretized using the finite element method and solved using a nonlinearly consistent approach that provides robust stability and convergence. The new formulation was validated for standard Li-ion cells and compared against experiments. Its scope and ability to capture spatio-temporal variations of potential and lithium distribution is demonstrated on a prototypical three-dimensional electrode problem.

  9. Three-dimensional pure deflagration models with nucleosynthesis and synthetic observables for Type Ia supernovae

    CERN Document Server

    Fink, M; Seitenzahl, I R; Ciaraldi-Schoolmann, F; Roepke, F K; Sim, S A; Pakmor, R; Ruiter, A J; Hillebrandt, W

    2013-01-01

    We investigate whether pure deflagration models of Chandrasekhar-mass carbon-oxygen white dwarf stars can account for one or more sub-class of the observed population of Type Ia supernova (SN Ia) explosions. We compute a set of three-dimensional full-star hydrodynamic explosion models, in which the deflagration strength is parametrized using the multi-spot ignition approach. For each model, we calculate detailed nucleosynthesis yields in a post-processing step with a 384 nuclide nuclear network. We also compute synthetic observables with our three-dimensional Monte-Carlo radiative transfer code for comparison with observations. For weak and intermediate deflagration strengths (energy release E_nuc <~ 1.1 x 10^51 erg), we find that the explosion leaves behind a bound remnant enriched with 3 to 10 per cent (by mass) of deflagration ashes. However, we do not obtain the large kick velocities recently reported in the literature. We find that weak deflagrations with E_nuc ~ 0.5 x 10^51 erg fit well both the ligh...

  10. A Three-Dimensional Scale-adaptive Turbulent Kinetic Energy Model in ARW-WRF Model

    Science.gov (United States)

    Zhang, Xu; Bao, Jian-Wen; Chen, Baode

    2017-04-01

    A new three-dimensional (3D) turbulent kinetic energy (TKE) subgrid mixing model is developed to address the problem of simulating the convective boundary layer (CBL) across the terra incognita in the Advanced Research version of the Weather Research and Forecasting Model (ARW-WRF). The new model combines the horizontal and vertical subgrid turbulent mixing into a single energetically consistent framework, in contrast to the convectional one-dimensional (1D) planetary boundary layer (PBL) schemes. The transition between large-eddy simulation (LES) and mesoscale limit is accomplished in the new scale-adaptive model. A series of dry CBL and real-time simulations using the WRF model are carried out, in which the newly-developed, scale-adaptive, more general and energetically consistent TKE-based model is compared with the conventional 1D TKE-based PBL schemes for parameterizing vertical subgrid turbulent mixing against the WRF LES dataset and observations. The characteristics of the WRF-simulated results using the new and conventional schemes are compared. The importance of including the nonlocal component in the vertical buoyancy specification in the newly-developed general TKE-based scheme is illustrated. The improvements of the new scheme over convectional PBL schemes across the terra incognita can be seen in the partitioning of vertical flux profiles. Through comparing the results from the simulations against the WRF LES dataset and observations, we will show the feasibility of using the new scheme in the WRF model in the lieu of the conventional PBL parameterization schemes.

  11. Numerical Filling Simulation of Injection Molding Using Three-Dimensional Model

    Institute of Scientific and Technical Information of China (English)

    GengTie; LiDequn; ZhouHuamin

    2003-01-01

    Most injection molded parts are three-dimensional, with complex geometrical configurations and thick/thin wall sections. A 3D simulation model will predict more accurately the filling process than a 2.5D model. This paper gives a mathematical model and numeric method based on 3D model, in which an equal-order velocity-pressure interpolation method is employed successfully. The relation between velocity and pressure is obtained from the discretized momentum equations in order to derive the pressure equation. A 3D control volume scheme is employed to track the flow front. The validity of the model has been tested through the analysis of the flow in cavity.

  12. Three-dimensional hydrological and thermal property models of Yucca Mountain, Nevada

    Energy Technology Data Exchange (ETDEWEB)

    Rautman, C.A.; McKenna, S.A. [Sandia National Labs., Albuquerque, NM (United States). Geohydrology Dept.

    1997-11-01

    This report describes the creation of three-dimensional numerical models of selected rock-matrix properties for the region of the potential high-level nuclear waste repository site at Yucca Mountain, which is located in southern Nevada. The models have been generated for a majority of the unsaturated and shallow saturated zone within an area referred to within the Yucca Mountain Site Characterization project as the site area. They comprise a number of material properties of importance both to detailed process-level modeling activities and to more summary-style performance assessment modeling. The material properties within these models are both spatially variable (heterogeneous) and spatially correlated, as the rocks are understood from data obtained from site-characterization drill holes widely scattered across the site area.

  13. Interplay between sign problem and Z3 symmetry in three-dimensional Potts models

    Science.gov (United States)

    Hirakida, Takehiro; Kouno, Hiroaki; Takahashi, Junichi; Yahiro, Masanobu

    2016-07-01

    We construct four kinds of Z3 -symmetric three-dimensional (3D) Potts models, each with a different number of states at each site on a 3D lattice, by extending the 3D 3-state Potts model. Comparing the ordinary Potts model with the four Z3-symmetric Potts models, we investigate how Z3 symmetry affects the sign problem and see how the deconfinement transition line changes in the μ -κ plane as the number of states increases, where μ (κ ) plays a role of chemical potential (temperature) in the models. We find that the sign problem is almost cured by imposing Z3 symmetry. This mechanism may happen in Z3-symmetric QCD-like theory. We also show that the deconfinement transition line has stronger μ dependence with respect to increasing the number of states.

  14. Three-Dimensional Flow Separation Induced by a Model Vocal Fold Polyp

    Science.gov (United States)

    Stewart, Kelley C.; Erath, Byron D.; Plesniak, Michael W.

    2012-11-01

    The fluid-structure energy exchange process for normal speech has been studied extensively, but it is not well understood for pathological conditions. Polyps and nodules, which are geometric abnormalities that form on the medial surface of the vocal folds, can disrupt vocal fold dynamics and thus can have devastating consequences on a patient's ability to communicate. A recent in-vitro investigation of a model polyp in a driven vocal fold apparatus demonstrated that such a geometric abnormality considerably disrupts the glottal jet behavior and that this flow field adjustment was a likely reason for the severe degradation of the vocal quality in patients. Understanding of the formation and propagation of vortical structures from a geometric protuberance, and their subsequent impact on the aerodynamic loadings that drive vocal fold dynamic, is a critical component in advancing the treatment of this pathological condition. The present investigation concerns the three-dimensional flow separation induced by a wall-mounted prolate hemispheroid with a 2:1 aspect ratio in cross flow, i.e. a model vocal fold polyp. Unsteady three-dimensional flow separation and its impact of the wall pressure loading are examined using skin friction line visualization and wall pressure measurements. Supported by the National Science Foundation, Grant No. CBET-1236351 and GW Center for Biomimetics and Bioinspired Engineering (COBRE).

  15. Three-dimensional model and simulation of vacuum arcs under axial magnetic fields

    Science.gov (United States)

    Wang, Lijun; Jia, Shenli; Zhou, Xin; Wang, Haijing; Shi, Zongqian

    2012-01-01

    In this paper, a three-dimensional (3d) magneto-hydro-dynamic (MHD) model of axial magnetic field vacuum arcs (AMFVAs) is established. Based on this model, AMFVAs are simulated and analyzed. Three-dimensional spatial distributions of many important plasma parameters and electric characteristics in AMFVAs can be obtained, such as ion number density, ion temperature, electron temperature, plasma pressure, current densities along different directions (x, y, and z), ion velocities along different directions, electric fields strength along different directions, and so on. Simulation results show that there exist significant spiral-shaped rotational phenomena in the AMFVAs, this kind of rotational phenomenon also can be verified by the many related experiments (AMFVAs photographs, especially for stronger AMF strength). For current simulation results of AMFVAs, the maximal rotational velocity at anode side is about 1100 m/s. Radial electric field is increased from arc center to arc edge; axial electric field is decreased from cathode side to anode side. Radial electric field at arc edge can be larger than axial electric field. Azimuthal electric field in most regions is much smaller than radial and axial electric field, but it can reach about 1.19 kV/m. Radial magnetic field is the smallest one compared with other components, it reaches to maximum value at the position near to anode, it can influence arc characteristics.

  16. Three-Dimensional Numerical Modeling of Macrosegregation in Continuously Cast Billets

    Directory of Open Access Journals (Sweden)

    Qipeng Dong

    2017-06-01

    Full Text Available Macrosegregation, serving as a major defect in billets, can severely degrade material homogeneity. Better understanding of the physical characteristics of macrosegregation through numerical simulation could significantly contribute to the segregation control. The main purpose of this study was to predict macrosegregation in continuously cast billets with a newly developed three-dimensional macrosegregation model. The fluid flow, solidification, and solute transport in the entire billet region were solved and analyzed. Flow patterns, revealing a typical melt recirculation at the upper region of mold and thermosolutal convection at the secondary cooling zone, significantly affect the solidification and solute distribution. The solute redistribution occurring with thermosolutal convection at the solidification front contributes significantly to continued macrosegregation as solidification proceeds. The results of this study show that the equilibrium partition coefficient is mostly responsible for the magnitude of macrosegregation, while comparison between solute P and S indicated that diffusion coefficients also have some amount of influence. Typical macrosegregation patterns containing a positively segregated peak at the centerline and negatively segregated minima at either side were obtained via the proposed three-dimensional macrosegregation model, which validated by the measured surface temperatures and segregation degree.

  17. Assessing waveform predictions of recent three-dimensional velocity models of Tibet

    Science.gov (United States)

    Bao, X.; Shen, Y.

    2015-12-01

    High-resolution tomographic models are essential for understanding the physical and compositional properties in the lithosphere and obtaining accurate earthquake source locations and moment tensors. Yet, there are significant disagreements in recent three-dimensional velocity models of the crust and uppermost mantle in Tibet. Question also remains as to whether models constructed from one type of seismic waves (body or surface waves) can be used to predict travel times and waveforms of another. In this study, six global or regional models are selected for Tibet, most of which became publically available in the past five years. A three-dimensional finite-difference method in the spherical coordinates is applied to simulate full-wave propagation of regional Pn (with periods longer than 1 second) and Rayleigh waves (20-75 s period) for ground-truth events located at regional distances. The models are evaluated based on the phase delays and cross-correlation coefficients between synthetic and observed waveforms. A model generated from full-wave ambient noise tomography by Shen and Zhang (2012) consistently produces the best predictions for Rayleigh waves throughout the dataset and the Pn waves for the paths from the Tarim Basin to central Tibet. LITHO1.0, inverted from surface wave dispersions, shows a relatively stable but intermediate performance in predicting Pn and Rayleigh waves. None of the models provide the best matches to both waves throughout the region. Furthermore, the models constructed from surface waves are not well suited to predict Pn, and vice versa. We attribute this mainly to lack of accurate constraints on radial anisotropy and Vp/Vs ratios in the upper mantle, and Moho topography. We conclude that simultaneous prediction for P, S, and surface waves requires an integrated velocity model constructed with multiple seismic waveforms and consideration of other important properties, such as anisotropy and attenuation.

  18. Assessing waveform predictions of recent three-dimensional velocity models of the Tibetan Plateau

    Science.gov (United States)

    Bao, Xueyang; Shen, Yang

    2016-04-01

    Accurate velocity models are essential for both the determination of earthquake locations and source moments and the interpretation of Earth structures. With the increasing number of three-dimensional velocity models, it has become necessary to assess the models for accuracy in predicting seismic observations. Six models of the crustal and uppermost mantle structures in Tibet and surrounding regions are investigated in this study. Regional Rayleigh and Pn (or Pnl) waveforms from two ground truth events, including one nuclear explosion and one natural earthquake located in the study area, are simulated by using a three-dimensional finite-difference method. Synthetics are compared to observed waveforms in multiple period bands of 20-75 s for Rayleigh waves and 1-20 s for Pn/Pnl waves. The models are evaluated based on the phase delays and cross-correlation coefficients between synthetic and observed waveforms. A model generated from full-wave ambient noise tomography best predicts Rayleigh waves throughout the data set, as well as Pn/Pnl waves traveling from the Tarim Basin to the stations located in central Tibet. In general, the models constructed from P wave tomography are not well suited to predict Rayleigh waves, and vice versa. Possible causes of the differences between observed and synthetic waveforms, and frequency-dependent variations of the "best matching" models with the smallest prediction errors are discussed. This study suggests that simultaneous prediction for body and surface waves requires an integrated velocity model constructed with multiple seismic waveforms and consideration of other important properties, such as anisotropy.

  19. Implementation of Localized Ensemble Assimilation for a Three-Dimensional Radiation Belt Model (Invited)

    Science.gov (United States)

    Godinez, H. C.; Chen, Y.; Kellerman, A. C.; Subbotin, D.; Shprits, Y.

    2013-12-01

    Earth's outer radiation belt is very dynamic and energetic electrons therein undergo constant changes due to acceleration, loss, and trans- port processes. In this work we improve the accuracy of simulated electron phase space density (PSD) of the Versatile Electron Radiation Belt (VERB) code, a three-dimensional radiation belt model, by implementing the localized ensemble transform Kalman filter (LETKF) assimilation method. Assimilation methods based on Kalman filtering have been successfully applied to one-dimensional radial diffusion radiation belt models, where it has been shown to greatly improve the model estimation of electron phase space density (PSD). This work expands upon previous research by implementing the LETKF method to assimilate observed electron density into VERB, a three-dimensional radiation belt model. In particular, the LETKF will perform the assimilation locally, where the size of the local region is defined by the diffusion of electrons in the model. This will enable the optimal assimilation of data throughout the model consistently with the flow of electrons. Two sets of assimilation experiments are presented. The first is an identical-twin experiment, where artificial data is generated from the same model, with the purpose of verifying the assimilation method. In the second set of experiments, real PSD observational data from missions such as CRRES and/or the Van Allen Probes are assimilated into VERB. The results show that data assimilation significantly improves the accuracy of the VERB model by efficiently including the available observations at the appropriate pitch angles, energy levels, and L-shell regions throughout the model.

  20. A SIMULATION OF CO2 UPTAKE IN A THREE DIMENSIONAL OCEAN CARBON CYCLE MODEL

    Institute of Scientific and Technical Information of China (English)

    金心; 石广玉

    2001-01-01

    A three-dimensional ocean carbon cycle model which is a general circulation model couple.d with simple biogeochemical processes is used to simulate CO2 uptake by the ocean. The OGCM used is a modified version of the Geophysical Fluid Dynamics Laboratory modular ocean model (MOM2). The ocean chemistry and a simple ocean biota model are included. Principal variables are .total CO2, alkalinity and phosphate. The vertical profile of POC flux observed by sediment traps is adopted, the rain ratio, a ratio of production rate of calcite against that of POC, and the bio-production efficiency should be 0. 06 and 2 per year, separately. The uptake of anthropogenicCO2 by the ocean is studied. Calculated oceanic uptake of anthropogenic CO2 during the 1980s is 2. 05× 10 15g (Pg) per year. The regional distributions of global oceanic CO2 are discussed.

  1. Two multilayered plate models with transverse shear warping functions issued from three dimensional elasticity equations

    CERN Document Server

    Loredo, Alexandre

    2013-01-01

    A multilayered plate theory which uses transverse shear warping functions issued from three-dimensional elasticity is presented. Two methods to obtain these transverse shear warping functions are detailed. The warping functions are issued from the variations of transverse shear stresses computed at special location points for a simply supported bending problem. The first method considers an exact 3D solution of the problem. The second method uses the solution provided by the model itself: the transverse shear stresses are computed by the integration of equilibrium equations. Hence, an iterative process is applied, the model being updated with the new warping functions, and so on. These two models are compared to other models and to analytical solutions for the bending of simply supported plates. Four different laminates and a sandwich are considered, length-to-thickness values varying from 2 to 100. An additional analytical solution that simulates the behavior of laminates under the plane stress hypothesis - ...

  2. Three-dimensional point-cloud room model in room acoustics simulations

    DEFF Research Database (Denmark)

    Markovic, Milos; Olesen, Søren Krarup; Hammershøi, Dorte

    2013-01-01

    and rotated around the vertical axis while for the second one the device is moved within the room. Benefits of both approaches were analyzed. The device's depth sensor provides a set of points in a three-dimensional coordinate system which represents scanned surfaces of the room interior. These data are used...... to build a 3D point-cloud model of the room. Several models are created to meet requirements of different room acoustics simulation algorithms: plane fitting and uniform voxel grid for geometric methods and triangulation mesh for the numerical methods. Advantages of the proposed method over the traditional...... acquisition and its representation with a 3D point-cloud model, as well as utilization of such a model for the room acoustics simulations. A room is scanned with a commercially available input device (Kinect for Xbox360) in two different ways; the first one involves the device placed in the middle of the room...

  3. Three-dimensional point-cloud room model for room acoustics simulations

    DEFF Research Database (Denmark)

    Markovic, Milos; Olesen, Søren Krarup; Hammershøi, Dorte

    2013-01-01

    and rotated around the vertical axis while for the second one the device is moved within the room. Benefits of both approaches were analyzed. The device's depth sensor provides a set of points in a three-dimensional coordinate system which represents scanned surfaces of the room interior. These data are used...... to build a 3D point-cloud model of the room. Several models are created to meet requirements of different room acoustics simulation algorithms: plane fitting and uniform voxel grid for geometric methods and triangulation mesh for the numerical methods. Advantages of the proposed method over the traditional...... acquisition and its representation with a 3D point-cloud model, as well as utilization of such a model for the room acoustics simulations. A room is scanned with a commercially available input device (Kinect for Xbox360) in two different ways; the first one involves the device placed in the middle of the room...

  4. Three-dimensional models of conventional and vertical junction laser-photovoltaic energy converters

    Science.gov (United States)

    Heinbockel, John H.; Walker, Gilbert H.

    1988-01-01

    Three-dimensional models of both conventional planar junction and vertical junction photovoltaic energy converters have been constructed. The models are a set of linear partial differential equations and take into account many photoconverter design parameters. The model is applied to Si photoconverters; however, the model may be used with other semiconductors. When used with a Nd laser, the conversion efficiency of the Si vertical junction photoconverter is 47 percent, whereas the efficiency for the conventional planar Si photoconverter is only 17 percent. A parametric study of the Si vertical junction photoconverter is then done in order to describe the optimum converter for use with the 1.06-micron Nd laser. The efficiency of this optimized vertical junction converter is 44 percent at 1 kW/sq cm.

  5. Development of a three-dimensional, regional, coupled wave, current, and sediment-transport model

    Science.gov (United States)

    Warner, J.C.; Sherwood, C.R.; Signell, R.P.; Harris, C.K.; Arango, H.G.

    2008-01-01

    We are developing a three-dimensional numerical model that implements algorithms for sediment transport and evolution of bottom morphology in the coastal-circulation model Regional Ocean Modeling System (ROMS v3.0), and provides a two-way link between ROMS and the wave model Simulating Waves in the Nearshore (SWAN) via the Model-Coupling Toolkit. The coupled model is applicable for fluvial, estuarine, shelf, and nearshore (surfzone) environments. Three-dimensional radiation-stress terms have been included in the momentum equations, along with effects of a surface wave roller model. The sediment-transport algorithms are implemented for an unlimited number of user-defined non-cohesive sediment classes. Each class has attributes of grain diameter, density, settling velocity, critical stress threshold for erosion, and erodibility constant. Suspended-sediment transport in the water column is computed with the same advection-diffusion algorithm used for all passive tracers and an additional algorithm for vertical settling that is not limited by the CFL criterion. Erosion and deposition are based on flux formulations. A multi-level bed framework tracks the distribution of every size class in each layer and stores bulk properties including layer thickness, porosity, and mass, allowing computation of bed morphology and stratigraphy. Also tracked are bed-surface properties including active-layer thickness, ripple geometry, and bed roughness. Bedload transport is calculated for mobile sediment classes in the top layer. Bottom-boundary layer submodels parameterize wave-current interactions that enhance bottom stresses and thereby facilitate sediment transport and increase bottom drag, creating a feedback to the circulation. The model is demonstrated in a series of simple test cases and a realistic application in Massachusetts Bay. ?? 2008 Elsevier Ltd. All rights reserved.

  6. Roscovitine inhibits differentiation and invasion in a three-dimensional skin reconstruction model of metastatic melanoma.

    Science.gov (United States)

    Mohapatra, Subhra; Coppola, Domenico; Riker, Adam I; Pledger, W Jack

    2007-02-01

    The aim of this study was to investigate the therapeutic potential of a cyclin-dependent kinase inhibitor, roscovitine, in cultured melanoma cells and a three-dimensional skin reconstruction model of metastatic melanoma. The modulatory effects of roscovitine on the growth and survival of normal melanocytes and cultured melanoma cell lines were tested. Additionally, we investigated the potential of roscovitine to regulate the growth and differentiation of a metastatic melanoma cell line (A375) in a three-dimensional skin reconstruction culture consisting of A375 cells admixed with normal human keratinocytes embedded within a collagen-constricted fibroblast matrix. We show that roscovitine is able to induce apoptosis in the melanoma cell lines A375, 888, and 624 but not in normal human cultured epithelial melanocytes. The degree of apoptosis within these cell lines correlated with the accumulation of p53 protein and concomitant reduction of X-linked inhibitor of apoptosis protein, with no change in the proteins Bcl-2 and survivin. We also found that roscovitine inhibited the growth and differentiation of A375 melanoma cells within the dermal layer of the skin. The results of this study show that roscovitine has the potential to inhibit the differentiation and invasion of metastatic melanoma and may be useful as a therapy for the treatment of patients with metastatic melanoma.

  7. Damaging effects of gliadin on three-dimensional cell culture model

    Institute of Scientific and Technical Information of China (English)

    Ersilia Dolfini; Maria Letizia Falini; Maria Teresa Bardella; Luca Elli; Leda Roncoroni; Barbara Costa; Maria Pia Colleoni; Vito Lorusso; Simona Ramponi; Paola Braidotti; Stefano Ferrero

    2005-01-01

    AIM: To evaluate the effects of gliadin on the oxidative environment in the"in vivo-like" model of a three-dimensional cell culture system.METHODS: LoVo cell line (intestinal adenocarcinoma)multicellular spheroids were treated with digested gliadin (with albumin used as a control). Spheroid volumes, cell viability and morphology, lactate dehydrogenase (LDH)release, content of reduced glutathione (GSH) and activity of GSH-related enzymes were examined. The data were statistically analyzed using the Student's t-test (P<0.05).was considered statistically significant.RESULTS: Gliadin reduced cell viability (from 20% to 60%)and led to morphological alterations characterized by apoptotic findings and cytoskeletal injuries. LDH activity increased. The content of GSH reduced (-20% vs controls),and activity of GSH-related enzymes was significantly inhibited.CONCLUSION: Gliadin treatment induces an imbalance in the antioxidative mechanism of cells cultured by the three-dimensional technique. This alteration may explain the cell damage directly caused by gliadin and the subsequent morphological abnormalities.

  8. Faults simulations for three-dimensional reservoir-geomechanical models with the extended finite element method

    Science.gov (United States)

    Prévost, Jean H.; Sukumar, N.

    2016-01-01

    Faults are geological entities with thicknesses several orders of magnitude smaller than the grid blocks typically used to discretize reservoir and/or over-under-burden geological formations. Introducing faults in a complex reservoir and/or geomechanical mesh therefore poses significant meshing difficulties. In this paper, we consider the strong-coupling of solid displacement and fluid pressure in a three-dimensional poro-mechanical (reservoir-geomechanical) model. We introduce faults in the mesh without meshing them explicitly, by using the extended finite element method (X-FEM) in which the nodes whose basis function support intersects the fault are enriched within the framework of partition of unity. For the geomechanics, the fault is treated as an internal displacement discontinuity that allows slipping to occur using a Mohr-Coulomb type criterion. For the reservoir, the fault is either an internal fluid flow conduit that allows fluid flow in the fault as well as to enter/leave the fault or is a barrier to flow (sealing fault). For internal fluid flow conduits, the continuous fluid pressure approximation admits a discontinuity in its normal derivative across the fault, whereas for an impermeable fault, the pressure approximation is discontinuous across the fault. Equal-order displacement and pressure approximations are used. Two- and three-dimensional benchmark computations are presented to verify the accuracy of the approach, and simulations are presented that reveal the influence of the rate of loading on the activation of faults.

  9. Vestibular coriolis effect differences modeled with three-dimensional linear-angular interactions.

    Science.gov (United States)

    Holly, Jan E

    2004-01-01

    The vestibular coriolis (or "cross-coupling") effect is traditionally explained by cross-coupled angular vectors, which, however, do not explain the differences in perceptual disturbance under different acceleration conditions. For example, during head roll tilt in a rotating chair, the magnitude of perceptual disturbance is affected by a number of factors, including acceleration or deceleration of the chair rotation or a zero-g environment. Therefore, it has been suggested that linear-angular interactions play a role. The present research investigated whether these perceptual differences and others involving linear coriolis accelerations could be explained under one common framework: the laws of motion in three dimensions, which include all linear-angular interactions among all six components of motion (three angular and three linear). The results show that the three-dimensional laws of motion predict the differences in perceptual disturbance. No special properties of the vestibular system or nervous system are required. In addition, simulations were performed with angular, linear, and tilt time constants inserted into the model, giving the same predictions. Three-dimensional graphics were used to highlight the manner in which linear-angular interaction causes perceptual disturbance, and a crucial component is the Stretch Factor, which measures the "unexpected" linear component.

  10. Fully Three-dimensional Simulation and Modeling of a Dense Plasma Focus

    CERN Document Server

    Meehan, B T

    2014-01-01

    A Dense Plasma Focus (DPF) is a pulsed-power machine that electromagnetically accelerates and cylindrically compresses a shocked plasma in a Z-pinch. The pinch results in a brief (about 100 nanosecond) pulse of X-rays, and, for some working gases, also a pulse of neutrons. A great deal of experimental research has been done into the physics of DPF reactions, and there exist mathematical models describing its behavior during the different time phases of the reaction. Two of the phases, known as the inverse pinch and the rundown, are approximately governed by magnetohydrodynamics, and there are a number of well-established codes for simulating these phases in two dimensions or in three dimensions under the assumption of axial symmetry. There has been little success, however, in developing fully three-dimensional simulations. In this work we present three-dimensional simulations of DPF reactions and demonstrate that 3D simulations predict qualitatively and quantitatively different behavior than their 2D counterp...

  11. A three-dimensional model of tidal currents in the mouth of the Tagus estuary

    Science.gov (United States)

    Fortunato, AndréB.; Baptista, António M.; Luettich, Richard A.

    1997-12-01

    Three-dimensional simulations of barotropic tides are used to investigate the complex circulation at the mouth of the Tagus estuary. Comparison with field data shows that elevations are well represented in the main area of interest, but velocities are slightly over-predicted due to a simplified treatment of intertidal flats. Model results show the existence of strong velocity phase lags (up to 1.75 hours for the semi-diurnal constituents) between the shallow areas and the deep channel. These phase lags are partially responsible for the generation by advective accelerations of a strong residual velocity field (velocities reach 0.5 m s -1) with well defined eddies. The interaction between the residual and tidal velocity fields in turn generates strong chaotic stirring. Localized sigma coordinates (LSC), a recently proposed method which allows the number of nodes per vertical to vary horizontally, are used for the first time in a three-dimensional application. A previously proposed criterion for the horizontal distribution of the total number of vertical nodes is shown to be inadequate when advective accelerations are important. However, with an alternative criterion, the use of LSC reduces maximum errors by a factor of two relative to traditional sigma coordinates.

  12. Rigorous joining of advanced reduced-dimensional beam models to three-dimensional finite element models

    Science.gov (United States)

    Song, Huimin

    In the aerospace and automotive industries, many finite element analyses use lower-dimensional finite elements such as beams, plates and shells, to simplify the modeling. These simplified models can greatly reduce the computation time and cost; however, reduced-dimensional models may introduce inaccuracies, particularly near boundaries and near portions of the structure where reduced-dimensional models may not apply. Another factor in creation of such models is that beam-like structures frequently have complex geometry, boundaries and loading conditions, which may make them unsuitable for modeling with single type of element. The goal of this dissertation is to develop a method that can accurately and efficiently capture the response of a structure by rigorous combination of a reduced-dimensional beam finite element model with a model based on full two-dimensional (2D) or three-dimensional (3D) finite elements. The first chapter of the thesis gives the background of the present work and some related previous work. The second chapter is focused on formulating a system of equations that govern the joining of a 2D model with a beam model for planar deformation. The essential aspect of this formulation is to find the transformation matrices to achieve deflection and load continuity on the interface. Three approaches are provided to obtain the transformation matrices. An example based on joining a beam to a 2D finite element model is examined, and the accuracy of the analysis is studied by comparing joint results with the full 2D analysis. The third chapter is focused on formulating the system of equations for joining a beam to a 3D finite element model for static and free-vibration problems. The transition between the 3D elements and beam elements is achieved by use of the stress recovery technique of the variational-asymptotic method as implemented in VABS (the Variational Asymptotic Beam Section analysis). The formulations for an interface transformation matrix and

  13. Operative simulation of anterior clinoidectomy using a rapid prototyping model molded by a three-dimensional printer.

    Science.gov (United States)

    Okonogi, Shinichi; Kondo, Kosuke; Harada, Naoyuki; Masuda, Hiroyuki; Nemoto, Masaaki; Sugo, Nobuo

    2017-05-15

    As the anatomical three-dimensional (3D) positional relationship around the anterior clinoid process (ACP) is complex, experience of many surgeries is necessary to understand anterior clinoidectomy (AC). We prepared a 3D synthetic image from computed tomographic angiography (CTA) and magnetic resonance imaging (MRI) data and a rapid prototyping (RP) model from the imaging data using a 3D printer. The objective of this study was to evaluate anatomical reproduction of the 3D synthetic image and intraosseous region after AC in the RP model. In addition, the usefulness of the RP model for operative simulation was investigated. The subjects were 51 patients who were examined by CTA and MRI before surgery. The size of the ACP, thickness and length of the optic nerve and artery, and intraosseous length after AC were measured in the 3D synthetic image and RP model, and reproducibility in the RP model was evaluated. In addition, 10 neurosurgeons performed AC in the completed RP models to investigate their usefulness for operative simulation. The RP model reproduced the region in the vicinity of the ACP in the 3D synthetic image, including the intraosseous region, at a high accuracy. In addition, drilling of the RP model was a useful operative simulation method of AC. The RP model of the vicinity of ACP, prepared using a 3D printer, showed favorable anatomical reproducibility, including reproduction of the intraosseous region. In addition, it was concluded that this RP model is useful as a surgical education tool for drilling.

  14. Numerical simulation of hydraulic fracturing using a three-dimensional fracture model coupled with an adaptive mesh fluid model

    NARCIS (Netherlands)

    Xiang, G.L.; Vire, A.; Pavlidis, D.; Pain, C.

    2015-01-01

    A three-dimensional fracture model developed in the context of the combined finite-discrete element method is incorporated into a two-way fluid-solid coupling model. The fracture model is capable of simulating the whole fracturing process. It includes pre-peak hardening deformation, post-peak strain

  15. Three-fluid, three-dimensional magnetohydrodynamic solar wind model with eddy viscosity and turbulent resistivity

    Energy Technology Data Exchange (ETDEWEB)

    Usmanov, Arcadi V.; Matthaeus, William H. [Department of Physics and Astronomy, University of Delaware, Newark, DE 19716 (United States); Goldstein, Melvyn L., E-mail: arcadi.usmanov@nasa.gov [Code 672, NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States)

    2014-06-10

    We have developed a three-fluid, three-dimensional magnetohydrodynamic solar wind model that incorporates turbulence transport, eddy viscosity, turbulent resistivity, and turbulent heating. The solar wind plasma is described as a system of co-moving solar wind protons, electrons, and interstellar pickup protons, with separate energy equations for each species. Numerical steady-state solutions of Reynolds-averaged solar wind equations coupled with turbulence transport equations for turbulence energy, cross helicity, and correlation length are obtained by the time relaxation method in the corotating with the Sun frame of reference in the region from 0.3 to 100 AU (but still inside the termination shock). The model equations include the effects of electron heat conduction, Coulomb collisions, photoionization of interstellar hydrogen atoms and their charge exchange with the solar wind protons, turbulence energy generation by pickup protons, and turbulent heating of solar wind protons and electrons. The turbulence transport model is based on the Reynolds decomposition and turbulence phenomenologies that describe the conversion of fluctuation energy into heat due to a turbulent cascade. In addition to using separate energy equations for the solar wind protons and electrons, a significant improvement over our previous work is that the turbulence model now uses an eddy viscosity approximation for the Reynolds stress tensor and the mean turbulent electric field. The approximation allows the turbulence model to account for driving of turbulence by large-scale velocity gradients. Using either a dipole approximation for the solar magnetic field or synoptic solar magnetograms from the Wilcox Solar Observatory for assigning boundary conditions at the coronal base, we apply the model to study the global structure of the solar wind and its three-dimensional properties, including embedded turbulence, heating, and acceleration throughout the heliosphere. The model results are

  16. A simplified transient three-dimensional model for estimating the thermal performance of the vapor chambers

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Yen-Shu; Pei, Bau-Shei [Department of Engineering and System Science, National Tsing Hua University, Hsinchu 30013, (Taiwan); Chien, Kuo-Hsiang; Wang, Chi-Chuan [Energy and Environment Research Laboratories, Industrial Technology Research Institute, Hsinchu 310, (Taiwan); Hung, Tzu-Chen [Department of Mechanical and Automation Engineering, I-Shou University, Kaohsiung County 840, (Taiwan)

    2006-12-15

    The vapor chambers (flat plate heat pipes) have been applied on the electronic cooling recently. To satisfy the quick-response requirement of the industries, a simplified transient three-dimensional linear model has been developed and tested in this study. In the proposed model, the vapor is assumed as a single interface between the evaporator and condenser wicks, and this assumption enables the vapor chamber to be analyzed by being split into small control volumes. Comparing with the previous available results, the calculated transient responses have shown good agreements with the existing results. For further validation of the proposed model, a water-cooling experiment was conducted. In addition to the vapor chamber, the heating block is also taken into account in the simulation. It is found that the inclusion of the capacitance of heating block shows a better agreement with the measurements. (author)

  17. Three Dimensional Baroclinic Numerical Model for Simulating Fresh and Salt Water Mixing in the Yangtze Estuary

    Institute of Scientific and Technical Information of China (English)

    郑金海; 严以新; 诸裕良

    2002-01-01

    For simulating fresh and salt water mixing in estuaries, a three dimensional nonlinear baroclinic numerical model isdeveloped, in which the gradients of horizontal pressure contain the gradient of barotropic pressure arising from the gradi-ent of tidal level and the gradient of baroclinic pressure due to the gradient of salinity. The Eulerian-Lagrangian method isemployed to descretize both the momentum equations of tidal motion and the equation of salt water diffusion so as to im-prove the computational stability and accuracy. The methods to provide the boundary conditions and the initial conditionsare proposed, and the criterion for computational stability of the salinity fields is presented. The present model is used formodeling fresh and salt water mixing in the Yangtze Estuary. Computations show that the salinity distribution has thecharacteristics of partial mixing pattern, and that the present model is suitable for simulation of fresh and salt water mixing in the Yangtze Estuary.

  18. Scene analysis for effective visual search in rough three-dimensional-modeling scenes

    Science.gov (United States)

    Wang, Qi; Hu, Xiaopeng

    2016-11-01

    Visual search is a fundamental technology in the computer vision community. It is difficult to find an object in complex scenes when there exist similar distracters in the background. We propose a target search method in rough three-dimensional-modeling scenes based on a vision salience theory and camera imaging model. We give the definition of salience of objects (or features) and explain the way that salience measurements of objects are calculated. Also, we present one type of search path that guides to the target through salience objects. Along the search path, when the previous objects are localized, the search region of each subsequent object decreases, which is calculated through imaging model and an optimization method. The experimental results indicate that the proposed method is capable of resolving the ambiguities resulting from distracters containing similar visual features with the target, leading to an improvement of search speed by over 50%.

  19. Intracellular Ca 2+ nonlinear wave behaviours in a three dimensional ventricular cell model

    Science.gov (United States)

    Li, Pan; Holden, Arun V.

    2009-06-01

    Intracellular Ca 2+ activity regulates a wide range of cellular biochemical processes; in muscle cells, it links membrane excitation to contraction. Ca 2+ dynamics includes both synchronous oscillations, and nonlinear wave phenomena, both arising from the superposition of spatially localised stochastic events, such as Ca 2+ sparks. We incorporated individualised cell geometry reconstructed from confocal microscopy with realistic spatial distribution of RyR clusters into the three dimensional ventricular cell model, and reproduced complex spatio-temporal intracellular wave patterns from Ca 2+ sparks. We also introduced a detailed nuclear Ca 2+ handing model to simulate prolonged nuclear Ca 2+ transient, and study the effects of cytosolic-nuclear coupling on intracellular Ca 2+ dynamics. The model provides a computational platform to study intracellular Ca 2+ with the ability to interact with experimental measurements of subcellular structures, and can be modified for other cell types.

  20. Linear surface roughness growth and flow smoothening in a three-dimensional biofilm model

    CERN Document Server

    Head, D A

    2013-01-01

    The sessile microbial communities known as biofilms exhibit different surface structures as environmental factors are varied, including nutrient availability and flow-generated shear stresses. Here we modify an established agent-based biofilm model to include adhesive interactions, permitting it to mechanically react to an imposed stress. This model is employed to analyse the growth of surface roughness of single-species, three-dimensional biofilms. We find linear growth laws of surface geometry in both horizontal and vertical directions, and an active surface layer whose thickness anti-correlates with roughness. Flow is consistently shown to reduce surface roughness without affecting the active layer. We argue that the rapid roughening is due to non-local surface interactions mediated by the nutrient field which are curtailed by sufficiently rapid flows, and suggest simplified models will need to be developed to elucidate the underlying mechanisms.

  1. Kinematic active region formation in a three-dimensional solar dynamo model

    CERN Document Server

    Yeates, A R

    2013-01-01

    We propose a phenomenological technique for modelling the emergence of active regions within a three-dimensional, kinematic dynamo framework. By imposing localised velocity perturbations, we create emergent flux-tubes out of toroidal magnetic field at the base of the convection zone, leading to the eruption of active regions at the solar surface. The velocity perturbations are calibrated to reproduce observed active region properties (including the size and flux of active regions, and the distribution of tilt angle with latitude), resulting in a more consistent treatment of flux-tube emergence in kinematic dynamo models than artificial flux deposition. We demonstrate how this technique can be used to assimilate observations and drive a kinematic 3D model, and use it to study the characteristics of active region emergence and decay as a source of poloidal field. We find that the poloidal components are strongest not at the solar surface, but in the middle convection zone, in contrast with the common assumption...

  2. Conversion of the Big Hill geological site characterization report to a three-dimensional model.

    Energy Technology Data Exchange (ETDEWEB)

    Stein, Joshua S.; Rautman, Christopher Arthur

    2003-02-01

    The Big Hill salt dome, located in southeastern Texas, is home to one of four underground oil-storage facilities managed by the U. S. Department of Energy Strategic Petroleum Reserve (SPR) Program. Sandia National Laboratories, as the geotechnical advisor to the SPR, conducts site-characterization investigations and other longer-term geotechnical and engineering studies in support of the program. This report describes the conversion of two-dimensional geologic interpretations of the Big Hill site into three-dimensional geologic models. The new models include the geometry of the salt dome, the surrounding sedimentary units, mapped faults, and the 14 oil storage caverns at the site. This work provides a realistic and internally consistent geologic model of the Big Hill site that can be used in support of future work.

  3. A three-dimensional multi-agent-based model for the evolution of Chagas' disease.

    Science.gov (United States)

    Galvão, Viviane; Miranda, José Garcia Vivas

    2010-06-01

    A better understanding of Chagas' disease is important because the knowledge about the progression and the participation of the different types of cells in this disease are still lacking. To clarify this system, the kinetics of inflammatory cells and parasite nests was shown in an experiment. Using this experimental data, we have developed a three-dimensional multi-agent-based computational model for the evolution of Chagas' disease. Our model includes five different types of agents: inflammatory cell, fibrosis, cardiomyocyte, fibroblast, and Trypanosoma cruzi. Fibrosis is fixed and the other types of agents can move through the empty space. They move randomly by using the Moore neighborhood. This model reproduces the acute and chronic phases of Chagas' disease and the volume occupied by all different types of cells in the cardiac tissue.

  4. Observations and three-dimensional photoionization modelling of the Wolf-Rayet planetary nebula Abell 48

    CERN Document Server

    Danehkar, A; Ercolano, B; Kniazev, A Y

    2014-01-01

    Recent observations reveal that the central star of the planetary nebula Abell 48 exhibits spectral features similar to massive nitrogen-sequence Wolf-Rayet stars. This raises a pertinent question, whether it is still a planetary nebula or rather a ring nebula of a massive star. In this study, we have constructed a three-dimensional photoionization model of Abell 48, constrained by our new optical integral field spectroscopy. An analysis of the spatially resolved velocity distributions allowed us to constrain the geometry of Abell 48. We used the collisionally excited lines to obtain the nebular physical conditions and ionic abundances of nitrogen, oxygen, neon, sulphur and argon, relative to hydrogen. We also determined helium temperatures and ionic abundances of helium and carbon from the optical recombination lines. We obtained a good fit to the observations for most of the emission-line fluxes in our photoionization model. The ionic abundances deduced from our model are in decent agreement with those deri...

  5. Abundance analysis of the halo giant HD 122563 with three-dimensional model stellar atmospheres

    Science.gov (United States)

    Collet, R.; Nordlund, Å.; Asplund, M.; Hayek, W.; Trampedach, R.

    We present a preliminary local thermodynamic equilibrium (LTE) abundance analysis of the template halo red giant HD122563 based on a realistic, three-dimensional (3D), time-dependent, hydrodynamical model atmosphere of the very metal-poor star. We compare the results of the 3D analysis with the abundances derived by means of a standard LTE analysis based on a classical, 1D, hydrostatic model atmosphere of the star. Due to the different upper photospheric temperature stratifications predicted by 1D and 3D models, we find large, negative, 3D-1D LTE abundance differences for low-excitation OH and Fe I lines. We also find trends with lower excitation potential in the derived Fe LTE abundances from Fe I lines, in both the 1D and 3D analyses. Such trends may be attributed to the neglected departures from LTE in the spectral line formation calculations.

  6. Abundance Analysis of the Halo Giant HD122563 with Three-Dimensional Model Stellar Atmospheres

    CERN Document Server

    Collet, R; Asplund, M; Hayek, W; Trampedach, R

    2009-01-01

    We present a preliminary local thermodynamic equilibrium (LTE) abundance analysis of the template halo red giant HD122563 based on a realistic, three-dimensional (3D), time-dependent, hydrodynamical model atmosphere of the very metal-poor star. We compare the results of the 3D analysis with the abundances derived by means of a standard LTE analysis based on a classical, 1D, hydrostatic model atmosphere of the star. Due to the different upper photospheric temperature stratifications predicted by 1D and 3D models, we find large, negative, 3D-1D LTE abundance differences for low-excitation OH and Fe I lines. We also find trends with lower excitation potential in the derived Fe LTE abundances from Fe I lines, in both the 1D and 3D analyses. Such trends may be attributed to the neglected departures from LTE in the spectral line formation calculations.

  7. A new three-dimensional electromechanical impedance model for an embedded dual-PZT transducer

    Science.gov (United States)

    Wang, Dansheng; Li, Zhi; Zhu, Hongping

    2016-07-01

    In the past twenty years, the electromechanical (EM) impedance technique has been investigated extensively in the mechanical, aviation and civil engineering fields. Many different EM impedance models have been proposed to characterize the interaction between the surface-bonded PZT transducer and the host structure. This paper formulates a new three-dimensional EM impedance model characterizing the interaction between an embedded circle dual-PZT transducer and the host structure based on the effective impedance concept. The proposed model is validated by experimental results from a group of smart cement cubes, in which three circle dual-PZT transducers are embedded respectively. In addition, a new EM impedance measuring method for the dual-PZT transducer is also introduced. In the measuring method, only a common signal generator and an oscilloscope are needed, by which the exciting and receiving voltage signals are obtained respectively. Combined with fast Fourier transform the EM impedance signatures of the dual-PZT transducers are obtained.

  8. An eddy-current model for three-dimensional nondestructive evaluation of advanced composites

    Science.gov (United States)

    Sabbagh, Harold A.; Murphy, R. Kim; Sabbagh, Elias H.

    2015-03-01

    We have developed a rigorous electromagnetic model and an inversion algorithm for the three-dimensional NDE of advanced composite materials. This approach extends Victor Technologies' work in eddy-current NDE of conventional metals, and allows one to determine in localized regions the fiber-resin ratio in graphite-epoxy, and to determine those anomalies, e.g., delaminations, broken fibers, moisture content, etc., that can be reconstructed by our inversion method. In developing the model, we apply rigorous electromagnetic theory to determine a Green's function for a slab of anisotropic composite material, and then determine the integral relations for the forward and inverse problems using the Green's function. We will give examples of the solution of forward problems using this model.

  9. An unstructured grid, three-dimensional model based on the shallow water equations

    Science.gov (United States)

    Casulli, V.; Walters, R.A.

    2000-01-01

    A semi-implicit finite difference model based on the three-dimensional shallow water equations is modified to use unstructured grids. There are obvious advantages in using unstructured grids in problems with a complicated geometry. In this development, the concept of unstructured orthogonal grids is introduced and applied to this model. The governing differential equations are discretized by means of a semi-implicit algorithm that is robust, stable and very efficient. The resulting model is relatively simple, conserves mass, can fit complicated boundaries and yet is sufficiently flexible to permit local mesh refinements in areas of interest. Moreover, the simulation of the flooding and drying is included in a natural and straightforward manner. These features are illustrated by a test case for studies of convergence rates and by examples of flooding on a river plain and flow in a shallow estuary. Copyright ?? 2000 John Wiley & Sons, Ltd.

  10. Application of SketchUp in Coke Oven Three-Dimensional Digital Modeling

    Directory of Open Access Journals (Sweden)

    Shuguang Ouyang

    2013-01-01

    Full Text Available Coke oven, which is a large industrial furnace, is complex in structure. A two-dimensional structure diagram can hardly help one observe the inner structure of a coke oven or master its working principle comprehensively. In order to solve this problem, a complete 3D digital model of a coke oven is generated by assembling the three-dimensional models of coke oven components created with SketchUp. It enables users to section the various components of the cove oven. The outer appearance and inner structure of the oven components also can be displayed visually from several different orientations. Moreover, it is convenient to storage and carry, operation easily and fast. It can be displayed on an ordinary computer and occupies no space at the laboratory. Meanwhile, a large sum of money that used for purchasing a physical coke oven model can be saved.

  11. Three-Dimensional Electron Optics Model Developed for Traveling-Wave Tubes

    Science.gov (United States)

    Kory, Carol L.

    2000-01-01

    A three-dimensional traveling-wave tube (TWT) electron beam optics model including periodic permanent magnet (PPM) focusing has been developed at the NASA Glenn Research Center at Lewis Field. This accurate model allows a TWT designer to develop a focusing structure while reducing the expensive and time-consuming task of building the TWT and hot-testing it (with the electron beam). In addition, the model allows, for the first time, an investigation of the effect on TWT operation of the important azimuthally asymmetric features of the focusing stack. The TWT is a vacuum device that amplifies signals by transferring energy from an electron beam to a radiofrequency (RF) signal. A critically important component is the focusing structure, which keeps the electron beam from diverging and intercepting the RF slow wave circuit. Such an interception can result in excessive circuit heating and decreased efficiency, whereas excessive growth in the beam diameter can lead to backward wave oscillations and premature saturation, indicating a serious reduction in tube performance. The most commonly used focusing structure is the PPM stack, which consists of a sequence of cylindrical iron pole pieces and opposite-polarity magnets. Typically, two-dimensional electron optics codes are used in the design of magnetic focusing devices. In general, these codes track the beam from the gun downstream by solving equations of motion for the electron beam in static-electric and magnetic fields in an azimuthally symmetric structure. Because these two-dimensional codes cannot adequately simulate a number of important effects, the simulation code MAFIA (solution of Maxwell's equations by the Finite-Integration-Algorithm) was used at Glenn to develop a three-dimensional electron optics model. First, a PPM stack was modeled in three dimensions. Then, the fields obtained using the magnetostatic solver were loaded into a particle-in-cell solver where the fully three-dimensional behavior of the beam

  12. The Coupling of Finite Element and Integral Equation Representations for Efficient Three-Dimensional Modeling of Electromagnetic Scattering and Radiation

    Science.gov (United States)

    Cwik, Tom; Zuffada, Cinzia; Jamnejad, Vahraz

    1996-01-01

    Finite element modeling has proven useful for accurtely simulating scattered or radiated fields from complex three-dimensional objects whose geometry varies on the scale of a fraction of a wavelength.

  13. Three-dimensional lake water quality modeling: sensitivity and uncertainty analyses.

    Science.gov (United States)

    Missaghi, Shahram; Hondzo, Miki; Melching, Charles

    2013-11-01

    Two sensitivity and uncertainty analysis methods are applied to a three-dimensional coupled hydrodynamic-ecological model (ELCOM-CAEDYM) of a morphologically complex lake. The primary goals of the analyses are to increase confidence in the model predictions, identify influential model parameters, quantify the uncertainty of model prediction, and explore the spatial and temporal variabilities of model predictions. The influence of model parameters on four model-predicted variables (model output) and the contributions of each of the model-predicted variables to the total variations in model output are presented. The contributions of predicted water temperature, dissolved oxygen, total phosphorus, and algal biomass contributed 3, 13, 26, and 58% of total model output variance, respectively. The fraction of variance resulting from model parameter uncertainty was calculated by two methods and used for evaluation and ranking of the most influential model parameters. Nine out of the top 10 parameters identified by each method agreed, but their ranks were different. Spatial and temporal changes of model uncertainty were investigated and visualized. Model uncertainty appeared to be concentrated around specific water depths and dates that corresponded to significant storm events. The results suggest that spatial and temporal variations in the predicted water quality variables are sensitive to the hydrodynamics of physical perturbations such as those caused by stream inflows generated by storm events. The sensitivity and uncertainty analyses identified the mineralization of dissolved organic carbon, sediment phosphorus release rate, algal metabolic loss rate, internal phosphorus concentration, and phosphorus uptake rate as the most influential model parameters.

  14. The Three-Dimensional Finite-Volume Non-Hydrostatic Icosahedral Model (NIM)

    Science.gov (United States)

    Lee, J. L.; MacDonald, A. E.

    2014-12-01

    A multi-scales Non-hydrostatic Icosahedral Model (NIM) has been developed at Earth System Research Laboratory (ESRL) to meet NOAA's future prediction mission ranging from mesoscale short-range, high-impact weather forecasts to longer-term intra-seasonal climate prediction. NIM formulates the latest numerical innovation of the three-dimensional finite-volume control volume on the quasi-uniform icosahedral grid suitable for ultra-high resolution simulations. NIM is designed to utilize the state-of-art computing architecture such as Graphic Processing Units (GPU) processors to run globally at kilometer scale resolution to explicitly resolve convective storms and complex terrains. The novel features of NIM numerical design include: 1.1. A local coordinate system upon which finite-volume integrations are undertaken. The use of a local Cartesian coordinate greatly simplifies the mathematic formulation of the finite-volume operators and leads to the finite-volume integration along straight lines on the plane, rather than along curved lines on the spherical surface. 1.2. A general indirect addressing scheme developed for modeling on irregular grid. It arranges the icosahedral grid with a one-dimensional vector loop structure, table specified memory order, and an indirect addressing scheme that yields very compact code despite the complexities of this grid. 1.3. Use of three-dimensional finite-volume integration over control volumes constructed on the height coordinates. Three-dimensional finite-volume integration accurately represents the Newton Third Law over terrain and improves pressure gradient force over complex terrain. 1.4. Use of the Runge-Kutta 4th order conservative and positive-definite transport scheme 1.5. NIM dynamical solver has been implemented on CPU as well as GPU. As one of the potential candidates for NWS next generation models, NIM dynamical core has been successfully verified with various benchmark test cases including those proposed by DCMIP

  15. Three-dimensional geologic model of the southeastern Espanola Basin, Santa Fe County, New Mexico

    Science.gov (United States)

    Pantea, Michael P.; Hudson, Mark R.; Grauch, V.J.S.; Minor, Scott A.

    2011-01-01

    This multimedia model and report show and describe digital three-dimensional faulted surfaces and volumes of lithologic units that confine and constrain the basin-fill aquifers within the Espanola Basin of north-central New Mexico. These aquifers are the primary groundwater resource for the cities of Santa Fe and Espanola, six Pueblo nations, and the surrounding areas. The model presented in this report is a synthesis of geologic information that includes (1) aeromagnetic and gravity data and seismic cross sections; (2) lithologic descriptions, interpretations, and geophysical logs from selected drill holes; (3) geologic maps, geologic cross sections, and interpretations; and (4) mapped faults and interpreted faults from geophysical data. Modeled faults individually or collectively affect the continuity of the rocks that contain the basin aquifers; they also help define the form of this rift basin. Structure, trend, and dip data not previously published were added; these structures are derived from interpretations of geophysical information and recent field observations. Where possible, data were compared and validated and reflect the complex relations of structures in this part of the Rio Grande rift. This interactive geologic framework model can be used as a tool to visually explore and study geologic structures within the Espanola Basin, to show the connectivity of geologic units of high and low permeability between and across faults, and to show approximate dips of the lithologic units. The viewing software can be used to display other data and information, such as drill-hole data, within this geologic framework model in three-dimensional space.

  16. Geostatistical three-dimensional modeling of oolite shoals, St. Louis Limestone, southwest Kansas

    Science.gov (United States)

    Qi, L.; Carr, T.R.; Goldstein, R.H.

    2007-01-01

    In the Hugoton embayment of southwestern Kansas, reservoirs composed of relatively thin (oil. The geometry and distribution of oolitic deposits control the heterogeneity of the reservoirs, resulting in exploration challenges and relatively low recovery. Geostatistical three-dimensional (3-D) models were constructed to quantify the geometry and spatial distribution of oolitic reservoirs, and the continuity of flow units within Big Bow and Sand Arroyo Creek fields. Lithofacies in uncored wells were predicted from digital logs using a neural network. The tilting effect from the Laramide orogeny was removed to construct restored structural surfaces at the time of deposition. Well data and structural maps were integrated to build 3-D models of oolitic reservoirs using stochastic simulations with geometry data. Three-dimensional models provide insights into the distribution, the external and internal geometry of oolitic deposits, and the sedimentologic processes that generated reservoir intervals. The structural highs and general structural trend had a significant impact on the distribution and orientation of the oolitic complexes. The depositional pattern and connectivity analysis suggest an overall aggradation of shallow-marine deposits during pulses of relative sea level rise followed by deepening near the top of the St. Louis Limestone. Cemented oolitic deposits were modeled as barriers and baffles and tend to concentrate at the edge of oolitic complexes. Spatial distribution of porous oolitic deposits controls the internal geometry of rock properties. Integrated geostatistical modeling methods can be applicable to other complex carbonate or siliciclastic reservoirs in shallow-marine settings. Copyright ?? 2007. The American Association of Petroleum Geologists. All rights reserved.

  17. An algorithm of multi-model spatial overlay based on three-dimensional terrain model TIN and its application

    Institute of Scientific and Technical Information of China (English)

    王少安; 张子平; 龚健雅

    2001-01-01

    3D-GIS spatial overlay analysis is being broadly concerned about in international academe and is a research focus. It is one of the important functions of spatial analysis using GIS technology. An algorithm of multi-model spatial overlay based on three-dimensional terrain model TIN is introduced in this paper which can be used to solve the TIN-based thrcc-dimensional overlay operation in spatial analysis. The feasibility arid validity of this algorithm is identified. This algorithm is used successfully in three-dimensional overlay and region variation overlay analysis.

  18. The refinement of hypocenter parameters on the basis of three-dimensional velocity models of focal zones

    Science.gov (United States)

    Slavina, L. B.; Pivovarova, N. B.

    1982-11-01

    A complex approach to the processing of seismological data to determine hypocenter coordinates and to construct three-dimensional velocity fields of focal zones is considered. The iterative process includes the determination of focal coordinates under the assumption of a laterally homogeneous medium, the construction of a three-dimensional velocity model, and subsequent redefinition of the focal coordinates taking into account the inhomogeneous structure of the medium. The principal results of calculations of three-dimensional velocity fields and refined earthquake hypocenters are presented for focal zones in Vrancea (Carpathians), the Caucasus, and Kamchatka.

  19. THREE-DIMENSIONAL NUMERICAL SIMULATION OF INTAKE MODEL WITH CROSS FLOW

    Institute of Scientific and Technical Information of China (English)

    CHUANG Wei-Liang; HSIAO Shih-Chun

    2011-01-01

    The hydrodynamics of a pump sump consisting of a main channel, pump sump, and intake pipe is examined using Truchas,a three-dimensional Navier-Stokes solver, with a Large Eddy Simulation (LES) turbulence model. The numerical results of streamwise velocity profiles and flow patterns are discussed and compared with experimental data of Ansar and Nakato. Fairly good agreement is obtained. Furthermore, unlike Ansar et al.'s inviscid solution, the proposed numerical model includes the effect of fluid viscosity and considers more realistic simulation conditions. Simulation results show that viscosity affects the prediction of flow patterns and that the streamwise velocity can be better captured by including cross flow. The effects of the submergence Froude number on the free surface and streamwise velocity are also examined. The free surface significantly fluctuates at high submergence Froude number flows and the corresponding distribution of streamwise velocity profiles exhibits a trend different from that obtained for low submergence Froude number flows.

  20. A system for quantitative morphological measurement and electronic modelling of neurons: three-dimensional reconstruction.

    Science.gov (United States)

    Stockley, E W; Cole, H M; Brown, A D; Wheal, H V

    1993-04-01

    A system for accurately reconstructing neurones from optical sections taken at high magnification is described. Cells are digitised on a 68000-based microcomputer to form a database consisting of a series of linked nodes each consisting of x, y, z coordinates and an estimate of dendritic diameter. This database is used to generate three-dimensional (3-D) displays of the neurone and allows quantitative analysis of the cell volume, surface area and dendritic length. Images of the cell can be manipulated locally or transferred to an IBM 3090 mainframe where a wireframe model can be displayed on an IBM 5080 graphics terminal and rotated interactively in real time, allowing visualisation of the cell from all angles. Space-filling models can also be produced. Reconstructions can also provide morphological data for passive electrical simulations of hippocampal pyramidal cells.

  1. Simulation study on reconstruction model of three-dimensional temperature distribution within visible range in furnace

    Institute of Scientific and Technical Information of China (English)

    Liu Dong; Wang Fei; Huang Qun-Xing; Yan Jian-Hua; Chi Yong; Cen Ke-Fa

    2008-01-01

    This paper presents a reconstruction model of three-dimensional temperature distribution in furnace based on radiative energy images captured by charge-coupled device (CCD) cameras within the visible wavelength range. Numerical simulation case was used in this study and a zigzag eccentric temperature distribution was assumed to verify the model. Least square QR-factorization (LSQR) method was introduced to deal with reconstruction equation. It is found that the reconstructed temperature distributions in low-temperature areas had some fluctuations and high-temperature areas were reconstructed well The whole reconstruction relative error was mainly due to errors in low-temperature areas and the relative error for highest-temperature reconstruction was quite small.

  2. Three-dimensional Oldroyd-B fluid flow with Cattaneo-Christov heat flux model

    Science.gov (United States)

    Shehzad, S. A.; Hayat, T.; Abbasi, F. M.; Javed, Tariq; Kutbi, M. A.

    2016-04-01

    The impact of Cattaneo-Christov heat flux in three-dimensional flow of an Oldroyd-B fluid over a bidirectional stretching surface is explored in this article. The boundary layer flow of an incompressible fluid is considered. Heat transfer analysis is discussed via the Cattaneo-Christov model of heat flux. Similarity transformations lead to the nonlinear ordinary differential systems. Convergent solutions of dimensionless velocities and temperature have been computed. Convergence analysis is presented graphically and numerically. The influence of physical parameters on the velocities and temperature are plotted and discussed. We observed that the values of temperature gradient are higher for the Cattaneo-Christov heat flux model when we compare it with the values obtained by the simple Fourier's law of heat conduction.

  3. Linear surface roughness growth and flow smoothening in a three-dimensional biofilm model

    Science.gov (United States)

    Head, D. A.

    2013-09-01

    The sessile microbial communities known as biofilms exhibit varying architectures as environmental factors are varied, which for immersed biofilms includes the shear rate of the surrounding flow. Here we modify an established agent-based biofilm model to include affine flow and employ it to analyze the growth of surface roughness of single-species, three-dimensional biofilms. We find linear growth laws for surface geometry in both horizontal and vertical directions and measure the thickness of the active surface layer, which is shown to anticorrelate with roughness. Flow is shown to monotonically reduce surface roughness without affecting the thickness of the active layer. We argue that the rapid roughening is due to nonlocal surface interactions mediated by the nutrient field, which are curtailed when advection competes with diffusion. We further argue the need for simplified models to elucidate the underlying mechanisms coupling flow to growth.

  4. A new method for three-dimensional laparoscopic ultrasound model reconstruction

    DEFF Research Database (Denmark)

    Fristrup, C W; Pless, T; Durup, J;

    2004-01-01

    was to perform a volumetric test and a clinical feasibility test of a new 3D method using standard laparoscopic ultrasound equipment. METHODS: Three-dimensional models were reconstructed from a series of two-dimensional ultrasound images using either electromagnetic tracking or a new 3D method. The volumetric...... accuracy of the new method was tested ex vivo, and the clinical feasibility was tested on a small series of patients. RESULTS: Both electromagnetic tracked reconstructions and the new 3D method gave good volumetric information with no significant difference. Clinical use of the new 3D method showed...... accurate models comparable to findings at surgery and pathology. CONCLUSIONS: The use of the new 3D method is technically feasible, and its volumetrically, accurate compared to 3D with electromagnetic tracking....

  5. Three-dimensional sound localisation with a lizard peripheral auditory model

    DEFF Research Database (Denmark)

    Schmidt, Michael Kjær; Shaikh, Danish

    2017-01-01

    sensorimotor approach to three-dimensional sound source localisation employing two microphones, where directed movements of the microphones resolve the location of an acoustic target in three dimensions. The approach utilises a model of the peripheral auditory system of lizards coupled with a multi......-layer perceptron neural network. The peripheral auditory model provides sound direction information in a single plane which by itself is insufficient to localise the acoustic target in three dimensions. Two spatial orientations of this plane by rotating the microphones −45 degrees and +45 degrees along...... the sagittal axis generate two maps of sound direction. Weighted superposition of these two maps results in a map that encodes sound direction information in three dimensions. Two independent but neural networks with respectively one and two hidden layers are trained on these maps via supervised learning...

  6. Emergent O(n ) symmetry in a series of three-dimensional Potts models

    Science.gov (United States)

    Ding, Chengxiang; Blöte, Henk W. J.; Deng, Youjin

    2016-09-01

    We study the q -state Potts model on a simple cubic lattice with ferromagnetic interactions in one lattice direction, and antiferromagnetic interactions in the other two directions. As the temperature T decreases, the system undergoes a second-order phase transition that fits in the universality class of the three-dimensional O (n ) model with n =q -1 . This conclusion is based on the estimated critical exponents, and histograms of the order parameter. At even smaller T we find, for q =4 and 5, a first-order transition to a phase with a different type of long-range order. This long-range order dissolves at T =0 , and the system effectively reduces to a disordered two-dimensional Potts antiferromagnet. These results are obtained by means of Monte Carlo simulations and finite-size scaling.

  7. Three-dimensional homology model of GlcNAc-TV glycosyltransferase.

    Science.gov (United States)

    Janoš, Pavel; Kozmon, Stanislav; Tvaroška, Igor; Koca, Jaroslav

    2016-07-01

    The enzyme UDP-N-acetylglucosamine: α-d-mannoside β-1-6 N-acetylglucosaminyltransferase V (GnT-V) catalyzes the transfer of GlcNAc from the UDP-GlcNAc donor to the α-1-6-linked mannose of the trimannosyl core structure of glycoproteins to produce the β-1-6-linked branching of N-linked oligosaccharides. β-1-6-GlcNAc-branched N-glycans are associated with cancer growth and metastasis. Therefore, the inhibition of GnT-V represents a key target for anti-cancer drug development. However, the development of potent and specific inhibitors of GnT-V is hampered by the lack of information on the three-dimensional structure of the enzyme and on the binding characteristics of its substrates. Here we present the first 3D structure of GnT-V as a result of homology modeling. Various alignment methods, docking the donor and acceptor substrates, and molecular dynamics simulation were used to construct seven homology models of GnT-V and characterize the binding of its substrates. The best homology model is consistent with available experimental data. The three-dimensional model, the structure of the enzyme catalytic site and binding information obtained for the donor and acceptor can be useful in studies of the catalytic mechanism and design of inhibitors of GnT-V. © The Author 2016. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  8. Slab1.0: A three-dimensional model of global subduction zone geometries

    Science.gov (United States)

    Hayes, G.P.; Wald, D.J.; Johnson, R.L.

    2012-01-01

    We describe and present a new model of global subduction zone geometries, called Slab1.0. An extension of previous efforts to constrain the two-dimensional non-planar geometry of subduction zones around the focus of large earthquakes, Slab1.0 describes the detailed, non-planar, three-dimensional geometry of approximately 85% of subduction zones worldwide. While the model focuses on the detailed form of each slab from their trenches through the seismogenic zone, where it combines data sets from active source and passive seismology, it also continues to the limits of their seismic extent in the upper-mid mantle, providing a uniform approach to the definition of the entire seismically active slab geometry. Examples are shown for two well-constrained global locations; models for many other regions are available and can be freely downloaded in several formats from our new Slab1.0 website, http://on.doi.gov/ d9ARbS. We describe improvements in our two-dimensional geometry constraint inversion, including the use of average active source seismic data profiles in the shallow trench regions where data are otherwise lacking, derived from the interpolation between other active source seismic data along-strike in the same subduction zone. We include several analyses of the uncertainty and robustness of our three-dimensional interpolation methods. In addition, we use the filtered, subduction-related earthquake data sets compiled to build Slab1.0 in a reassessment of previous analyses of the deep limit of the thrust interface seismogenic zone for all subduction zones included in our global model thus far, concluding that the width of these seismogenic zones is on average 30% larger than previous studies have suggested. Copyright 2011 by the American Geophysical Union.

  9. A minimally disruptive model and three-dimensional evaluation of Lisfranc joint diastasis.

    Science.gov (United States)

    Panchbhavi, Vinod K; Andersen, Clark R; Vallurupalli, Santaram; Yang, Jinping

    2008-12-01

    There is no model that can reproduce the diastasis at the Lisfranc joint after isolated transection of the Lisfranc ligament. Prior models required extensive sectioning of ligaments in the midfoot and represent injuries that cause extensive tarsometatarsal fracture-dislocations. They do not represent a subset of injuries that cause subtle or limited disruption at the Lisfranc joint. The purpose of this study was to create a model with the minimum amount of ligamentous disruption and loading necessary to consistently observe diastasis at the Lisfranc joint. Fourteen fresh-frozen paired cadaver feet were dissected to expose the dorsum. Three screws were inserted into each first cuneiform and second metatarsal to create a pair of registration triads. A digitizer was utilized to record the three-dimensional positions of the screws and their displacement under loaded and unloaded conditions before and after the Lisfranc ligament was cut (intact and cut conditions). The first and second cuneiforms and their metatarsals were removed, and the attachment sites of the dorsal and the Lisfranc ligament were digitized. The three-dimensional positions of the bones and ligament displacement were determined. The significance of differences between conditions was tested with analysis of variance, and linear regression analysis was used to test the correlation between dorsal and plantar displacements. There was a significant difference, of 1.3 mm, in the mean displacement between the cut loaded and intact loaded conditions (p < 0.0001). A modest correlation (r(2) = 0.60) was found between dorsal displacement and displacement at the site of the Lisfranc ligament, possibly attributable to rotations between the first cuneiform and second metatarsal. Isolated sectioning of the Lisfranc ligament is sufficient to consistently create diastasis at the Lisfranc joint. Dorsal displacements between the first cuneiform and second metatarsal are a modest predictor of plantar displacements.

  10. Comparison between iteration schemes for three-dimensional coordinate-transformed saturated-unsaturated flow model

    Science.gov (United States)

    An, Hyunuk; Ichikawa, Yutaka; Tachikawa, Yasuto; Shiiba, Michiharu

    2012-11-01

    SummaryThree different iteration methods for a three-dimensional coordinate-transformed saturated-unsaturated flow model are compared in this study. The Picard and Newton iteration methods are the common approaches for solving Richards' equation. The Picard method is simple to implement and cost-efficient (on an individual iteration basis). However it converges slower than the Newton method. On the other hand, although the Newton method converges faster, it is more complex to implement and consumes more CPU resources per iteration than the Picard method. The comparison of the two methods in finite-element model (FEM) for saturated-unsaturated flow has been well evaluated in previous studies. However, two iteration methods might exhibit different behavior in the coordinate-transformed finite-difference model (FDM). In addition, the Newton-Krylov method could be a suitable alternative for the coordinate-transformed FDM because it requires the evaluation of a 19-point stencil matrix. The formation of a 19-point stencil is quite a complex and laborious procedure. Instead, the Newton-Krylov method calculates the matrix-vector product, which can be easily approximated by calculating the differences of the original nonlinear function. In this respect, the Newton-Krylov method might be the most appropriate iteration method for coordinate-transformed FDM. However, this method involves the additional cost of taking an approximation at each Krylov iteration in the Newton-Krylov method. In this paper, we evaluated the efficiency and robustness of three iteration methods—the Picard, Newton, and Newton-Krylov methods—for simulating saturated-unsaturated flow through porous media using a three-dimensional coordinate-transformed FDM.

  11. Production of accurate skeletal models of domestic animals using three-dimensional scanning and printing technology.

    Science.gov (United States)

    Li, Fangzheng; Liu, Chunying; Song, Xuexiong; Huan, Yanjun; Gao, Shansong; Jiang, Zhongling

    2017-09-15

    Access to adequate anatomical specimens can be an important aspect in learning the anatomy of domestic animals. In this study, the authors utilized a structured light scanner and fused deposition modeling (FDM) printer to produce highly accurate animal skeletal models. First, various components of the bovine skeleton, including the femur, the fifth rib, and the sixth cervical (C6) vertebra were used to produce digital models. These were then used to produce 1:1 scale physical models with the FDM printer. The anatomical features of the digital models and three-dimensional (3D) printed models were then compared with those of the original skeletal specimens. The results of this study demonstrated that both digital and physical scale models of animal skeletal components could be rapidly produced using 3D printing technology. In terms of accuracy between models and original specimens, the standard deviations of the femur and the fifth rib measurements were 0.0351 and 0.0572, respectively. All of the features except the nutrient foramina on the original bone specimens could be identified in the digital and 3D printed models. Moreover, the 3D printed models could serve as a viable alternative to original bone specimens when used in anatomy education, as determined from student surveys. This study demonstrated an important example of reproducing bone models to be used in anatomy education and veterinary clinical training. Anat Sci Educ. © 2017 American Association of Anatomists. © 2017 American Association of Anatomists.

  12. Three-Dimensional Soil Landscape Modeling: A Potential Earth Science Teaching Tool

    Science.gov (United States)

    Schmid, Brian M.; Manu, Andrew; Norton, Amy E.

    2009-01-01

    Three-dimensional visualization is helpful in understanding soils, and three dimensional (3-D) tools are gaining popularity in teaching earth sciences. Those tools are still somewhat underused in soil science, yet soil properties such as texture, color, and organic carbon content vary both vertically and horizontally across the landscape. These…

  13. Which animal model for understanding human navigation in a three-dimensional world?

    Science.gov (United States)

    Orban, Guy A

    2013-10-01

    Single-cell studies of monkey posterior parietal cortex (PPC) have revealed the extensive neuronal representations of three-dimensional subject motion and three-dimensional layout of the environment. I propose that navigational planning integrates this PPC information, including gravity signals, with horizontal-plane based information provided by the hippocampal formation, modified in primates by expansion of the ventral stream.

  14. Global climate changes as forecast by Goddard Institute for Space Studies three-dimensional model

    Science.gov (United States)

    Hansen, J.; Fung, I.; Lacis, A.; Rind, D.; Lebedeff, S.; Ruedy, R.; Russell, G.

    1988-01-01

    The global climate effects of time-dependent atmospheric trace gas and aerosol variations are simulated by NASA-Goddard's three-dimensional climate model II, which possesses 8 x 10-deg horizontal resolution, for the cases of a 100-year control run and three different atmospheric composition scenarios in which trace gas growth is respectively a continuation of current exponential trends, a reduced linear growth, and a rapid curtailment of emissions due to which net climate forcing no longer increases after the year 2000. The experiments begin in 1958, run to the present, and encompass measured or estimated changes in CO2, CH4, N2O, chlorofluorocarbons, and stratospheric aerosols. It is shown that the greenhouse warming effect may be clearly identifiable in the 1990s.

  15. Parallelization of a Three-Dimensional Shallow-Water Estuary Model on the KSR-1

    Directory of Open Access Journals (Sweden)

    C. FalcÓ Korn

    1995-01-01

    Full Text Available Flows in estuarial and coastal regions may be described by the shallow-water equations. The processes of pollution transport, sediment transport, and plume dispersion are driven by the underlying hydrodynamics. Accurate resolution of these processes requires a three-dimensional formulation with turbulence modeling, which is very demanding computationally. A numerical scheme has been developed which is both stable and accurate – we show that this scheme is also well suited to parallel processing, making the solution of massive complex problems a practical computing possibility. We describe the implementation of the numerical scheme on a Kendall Square Research KSR-1 multiprocessor, and present experimental results which demonstrate that a problem requiring 600,000 mesh points and 6,000 time steps can be solved in under 8 hours using 32 processors.

  16. Three-dimensional finite element modelling of the uniaxial tension test

    DEFF Research Database (Denmark)

    Østergaard, Lennart; Stang, Henrik

    2002-01-01

    Experimental determination of the stress-crack opening relationship (σ-w) for concrete as defined in the fictitious crack model has proven to be difficult. This is due to the problems that may arise from application of the inverse analysis method necessary for the derivation of the relationship....... One of the most direct methods for determination of the σ-w relationship is the uniaxial tension test, where a notched specimen is pulled apart while the tensile load and the crack opening displacement is observed. This method is appealing since the interpretation is straightforward. The method...... is examined in this paper through three dimensional finite element analyses. It is concluded that the interpretation of the uniaxial tension test is indeed straightforward, if the testing machine stiffness is sufficiently high....

  17. Segmentation of Three Dimensional Cell Culture Models from aSingle Focal Plane

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Hang; Parvin, Bahram

    2006-11-01

    Three dimensional cell culture models offer new opportunities for development of computational techniques for segmentation and localization. These assays have a unique signature of a clump of cells that correspond to a functioning colony. Often the nuclear compartment is labeled and then imaged with fluorescent microscopy to provide context for protein localization. These colonies are first delineated from background using the level set method. Within each colony, nuclear regions are then bounded by their center of mass through radial voting, and a local neighborhood for each nucleus is established through Voronoi tessellation. Finally, the level set method is applied again within each Voronoi region to delineate the nuclear compartment. The paper concludes with the application of the proposed method to a dataset of experimental data demonstrating a stable solution when iterative radial voting and level set methods are used synergistically.

  18. A recapitulative three-dimensional model of breast carcinoma requires perfusion for multi-week growth

    Directory of Open Access Journals (Sweden)

    Kayla F Goliwas

    2016-07-01

    Full Text Available Breast carcinomas are complex, three-dimensional tissues composed of cancer epithelial cells and stromal components, including fibroblasts and extracellular matrix. In vitro models that more faithfully recapitulate this dimensionality and stromal microenvironment should more accurately elucidate the processes driving carcinogenesis, tumor progression, and therapeutic response. Herein, novel in vitro breast carcinoma surrogates, distinguished by a relevant dimensionality and stromal microenvironment, are described and characterized. A perfusion bioreactor system was used to deliver medium to surrogates containing engineered microchannels and the effects of perfusion, medium composition, and the method of cell incorporation and density of initial cell seeding on the growth and morphology of surrogates were assessed. Perfused surrogates demonstrated significantly greater cell density and proliferation and were more histologically recapitulative of human breast carcinoma than surrogates maintained without perfusion. Although other parameters of the surrogate system, such as medium composition and cell seeding density, affected cell growth, perfusion was the most influential parameter.

  19. THREE-DIMENSIONAL NUMERICAL MODELLING OF SUBMERGED DIKE ALIGNMENT IN CURVED ESTUARINE CHANNEL

    Institute of Scientific and Technical Information of China (English)

    ZHENG Jin-hai; LIU Ying-qi; YAN Yi-xin; ZHU Yu-liang

    2005-01-01

    Submerged dikes were frequently built in curved estuarine channels to improve navigational conditions. A three-dimensional numerical model of tidal motions was developed to simulate flows through the submerged dike alignment in curved estuarine reach of complex bathymetry on the basis of satisfactory calibrations. Through the analysis of the morphological characteristics of the curved channel of the Huangpu River mouth in the Yangtze River Delta, a submerged dike alignment project was examined. The effect of the navigation channel improvement project and its influence on the flow regimes, the navigational conditions, the flood control and the operating conditions of harbours within the adjacent water area were evaluated, and the technical feasibility of the navigation channel improvement scheme was demonstrated.

  20. Modelling the dynamics of condensation and evaporation of fluids in three-dimensional slit pores

    Science.gov (United States)

    Casselman, Joshua A.; Desouza, Anish; Monson, Peter A.

    2015-05-01

    We present an application of dynamic mean field theory (DMFT) for lattice gas models of confined fluids to the case of a fluid in a three-dimensional narrow slit between two plates. We consider a process where the slit is in contact with a subcritical bulk vapour and the bulk chemical potential is changed from a dilute gas value to a value close to that of the bulk saturated vapour so that capillary condensation occurs in the pore. DMFT predicts that the nucleation process during the condensation occurs by the formation of multiple liquid bridges spanning the pore walls, starting in the corners of the slit. These bridges eventually coalesce and the condensation transition terminates through the shrinkage and disappearance of a vapour bubble. We find that the density distribution is sensitive to the dimensions of the slit, with the number of bridges increasing with the slit area.

  1. Coherent Network Analysis of Gravitational Waves from Three-Dimensional Core-Collapse Supernova Models

    CERN Document Server

    Hayama, Kazuhiro; Kotake, Kei; Takiwaki, Tomoya

    2015-01-01

    Using predictions from three-dimensional (3D) hydrodynamics simulations of core-collapse supernovae (CCSNe), we present a coherent network analysis to detection, reconstruction, and the source localization of the gravitational-wave (GW) signals. By combining with the GW spectrogram analysis, we show that several important hydrodynamics features imprinted in the original waveforms persist in the waveforms of the reconstructed signals. The characteristic excess in the GW spectrograms originates not only from rotating core-collapse and bounce, the subsequent ring down of the proto-neutron star (PNS) as previously identified, but also from the formation of magnetohydrodynamics jets and non-axisymmetric instabilities in the vicinity of the PNS. Regarding the GW signals emitted near at the rotating core bounce, the horizon distance, which we set by a SNR exceeding 8, extends up to $\\sim$ 18 kpc for the most rapidly rotating 3D model among the employed waveform libraries. Following the rotating core bounce, the domi...

  2. Three-Dimensional Modelling inside a Differential Pressure Laminar Flow Bioreactor Filled with Porous Media

    Directory of Open Access Journals (Sweden)

    Birgit Weyand

    2015-01-01

    Full Text Available A three-dimensional computational fluid dynamics- (CFD- model based on a differential pressure laminar flow bioreactor prototype was developed to further examine performance under changing culture conditions. Cell growth inside scaffolds was simulated by decreasing intrinsic permeability values and led to pressure build-up in the upper culture chamber. Pressure release by an integrated bypass system allowed continuation of culture. The specific shape of the bioreactor culture vessel supported a homogenous flow profile and mass flux at the scaffold level at various scaffold permeabilities. Experimental data showed an increase in oxygen concentration measured inside a collagen scaffold seeded with human mesenchymal stem cells when cultured in the perfusion bioreactor after 24 h compared to static culture in a Petri dish (dynamic: 11% O2 versus static: 3% O2. Computational fluid simulation can support design of bioreactor systems for tissue engineering application.

  3. The three-dimensional, three state Potts model in a negative external field

    CERN Document Server

    Bonati, Claudio

    2010-01-01

    We investigate the critical behaviour of the three-dimensional, three state Potts model in presence of a negative external field $h$, i.e. disfavouring one of the three states. A genuine phase transition is present for all values of $|h|$, corresponding to the spontaneous breaking of a residual $Z_2$ symmetry. The transition is first/second order respectively for small/large values of $|h|$, with a tricritical field $h_{\\rm tric}$ separating the two regimes. We provide, using different and consistent approaches, a precise determination of $h_{\\rm tric}$; we also compare with previous studies and discuss the relevance of our investigation to analogous studies of the QCD phase diagram in presence of an imaginary chemical potential.

  4. A three-dimensional turbulent compressible flow model for ejector and fluted mixers

    Science.gov (United States)

    Rushmore, W. L.; Zelazny, S. W.

    1978-01-01

    A three dimensional finite element computer code was developed to analyze ejector and axisymmetric fluted mixer systems whose flow fields are not significantly influenced by streamwise diffusion effects. A two equation turbulence model was used to make comparisons between theory and data for various flow fields which are components of the ejector system, i.e., (1) turbulent boundary layer in a duct; (2) rectangular nozzle (free jet); (3) axisymmetric nozzle (free jet); (4) hypermixing nozzle (free jet); and (5) plane wall jet. Likewise, comparisons of the code with analytical results and/or other numerical solutions were made for components of the axisymmetric fluted mixer system. These included: (1) developing pipe flow; (2) developing flow in an annular pipe; (3) developing flow in an axisymmetric pipe with conical center body and no fluting and (4) developing fluted pipe flow. Finally, two demonstration cases are presented which show the code's ability to analyze both the ejector and axisymmetric fluted mixers.

  5. Three-dimensional numerical simulation of a bird model in unsteady flight

    Science.gov (United States)

    Lin-Lin, Zhu; Hui, Guan; Chui-Jie, Wu

    2016-07-01

    In this paper, a type of numerical simulation of a three-dimensional (3D) bionic bird with flapping wings in a viscous flow is studied. The model is a self-propelled flying bird capable of free rotation and translation whose flying motion follows the laws of conservation of momentum and angular momentum. The bird is propelled and lifted through flapping and rotating wings and most of thrust force and lift force are exerted on both wings. Both the vortex structures and the flight characteristics are also presented. The relationship between both wings' movement and the vortex structures as well as that between both wings' movement and flight characteristics are also analyzed in this paper. The study uses a 3D computational fluid dynamics package that includes the combined immersed boundary method, volume of fluid method, adaptive multigrid finite volume method, and control strategy for swimming and flying.

  6. Three-dimensional model of the honeybee venom allergen Api m 7: structural and functional insights.

    Science.gov (United States)

    Georgieva, Dessislava; Greunke, Kerstin; Betzel, Christian

    2010-06-01

    Api m 7 is one of the major protease allergens of the honeybee venom. It consists of a serine protease-like (SPL) and a CUB domain. The knowledge about the structure and function of Api m 7 is limited mainly to its amino acid sequence. Three-dimensional models of the two structural domains were constructed using their amino acid sequences and the crystallographic coordinates of prophenoloxidase-activating factor (PPAF-II) as a template for the SPL domain and the coordinates of porcine spermadhesin PSP-II for the CUB domain. The structural organization of Api m 7 suggests that the CUB domain is involved in interactions with natural substrates while the SPL domain probably activates zymogens. IgE epitopes and antigenic sites were predicted. Api m 7 shows structural and functional similarity to the members of the PPAF-II family. Possible substrates, function and evolution of the enzyme are discussed in the paper.

  7. Three-dimensional photoionization modelling of the planetary nebula NGC 3918

    Science.gov (United States)

    Ercolano, B.; Morisset, C.; Barlow, M. J.; Storey, P. J.; Liu, X.-W.

    2003-04-01

    The three-dimensional Monte Carlo photoionization code MOCASSIN has been applied to construct a realistic model of the planetary nebula NGC 3918. Three different geometric models were tried, the first being the biconical density distribution already used some years ago by Clegg et al. In this model the nebula is approximated by a biconical structure of enhanced density, embedded in a lower-density spherical region. Spindle-like density distributions were used for the other two models (models A and B). Model A used a mass distribution slightly modified from one of Mellema's hydrodynamical models that had already been adopted by Corradi et al. for their observational analysis of NGC 3918. Our spindle-like model B instead used an analytical expression to describe the shape of the inner shell of this object as consisting of an ellipsoid embedded in a sphere. The effects of the interaction of the diffuse fields coming from two adjacent regions of different densities were investigated. These are found to be non-negligible, even for the relatively uncomplicated case of a biconical geometry. We found that the ionization structure of low-ionization species near the boundaries is particularly affected. It is found that all three models provided acceptable matches to the integrated nebular optical and ultraviolet spectrum. Large discrepancies were found between all of the model predictions of infrared fine-structure line fluxes and ISO SWS measurements. This was found to be largely due to an offset of ~14 arcsec from the centre of the nebula that affected all of the ISO observations of NGC 3918. For each model, we also produced projected emission-line maps and position-velocity diagrams from synthetic long-slit spectra, which could be compared to recent HST images and ground-based long-slit echelle spectra. This comparison showed that spindle-like model B provided the best match to the observations. Although the integrated emission-line spectrum of NGC 3918 can be reproduced

  8. Conversion of the Bayou Choctaw geological site characterization report to a three-dimensional model.

    Energy Technology Data Exchange (ETDEWEB)

    Stein, Joshua S. (Sandia National Laboratories, Carlsbad, NM); Rautman, Christopher Arthur

    2004-02-01

    The geologic model implicit in the original site characterization report for the Bayou Choctaw Strategic Petroleum Reserve Site near Baton Rouge, Louisiana, has been converted to a numerical, computer-based three-dimensional model. The original site characterization model was successfully converted with minimal modifications and use of new information. The geometries of the salt diapir, selected adjacent sedimentary horizons, and a number of faults have been modeled. Models of a partial set of the several storage caverns that have been solution-mined within the salt mass are also included. Collectively, the converted model appears to be a relatively realistic representation of the geology of the Bayou Choctaw site as known from existing data. A small number of geometric inconsistencies and other problems inherent in 2-D vs. 3-D modeling have been noted. Most of the major inconsistencies involve faults inferred from drill hole data only. Modem computer software allows visualization of the resulting site model and its component submodels with a degree of detail and flexibility that was not possible with conventional, two-dimensional and paper-based geologic maps and cross sections. The enhanced visualizations may be of particular value in conveying geologic concepts involved in the Bayou Choctaw Strategic Petroleum Reserve site to a lay audience. A Microsoft WindowsTM PC-based viewer and user-manipulable model files illustrating selected features of the converted model are included in this report.

  9. Three-dimensional resistivity modeling of GREATEM survey data from Ontake Volcano, northwest Japan

    Science.gov (United States)

    Abd Allah, Sabry; Mogi, Toru

    2016-05-01

    Ontake Volcano is located in central Japan, 200 km northwest of Tokyo and erupted on September 27, 2014. To study the structure of Ontake Volcano and discuss the process of its phreatic eruption, which can help in future eruptions mitigation, airborne electromagnetic (AEM) surveys using the grounded electrical-source airborne transient electromagnetic (GREATEM) system were conducted over Ontake Volcano. Field measurements and data analysis were done by OYO Company under the Sabo project managed by the Ministry of Land, Infrastructure, Transport and Tourism. Processed data and 1D resistivity models were provided by this project. We performed numerical forward modeling to generate a three-dimensional (3D) resistivity structure model that fits the GREATEM data where a composite of 1D resistivity models was used as the starting model. A 3D electromagnetic forward-modeling scheme based on a staggered-grid finite-difference method was modified and used to calculate the response of the 3D resistivity model along each survey line. We verified the model by examining the fit of magnetic-transient responses between the field data and 3D forward-model computed data. The preferred 3D resistivity models show that a moderately resistive structure (30-200 Ω m) is characteristic of most of the volcano, and were able to delineate a hydrothermal zone within the volcanic edifice. This hydrothermal zone may be caused by a previous large sector collapse.

  10. Lifetime prediction for the subsurface crack propagation using three-dimensional dynamic FEA model

    Science.gov (United States)

    Yin, Yuan; Chen, Yun-Xia; Liu, Le

    2017-03-01

    The subsurface crack propagation is one of the major interests for gear system research. The subsurface crack propagation lifetime is the number of cycles remaining for a spall to appear, which can be obtained through either stress intensity factor or accumulated plastic strain analysis. In this paper, the heavy loads are applied to the gear system. When choosing stress intensity factor, the high compressive stress suppresses Mode I stress intensities and severely reduces Mode II stress intensities in the heavily loaded lubricated contacts. Such that, the accumulated plastic strain is selected to calculate the subsurface crack propagation lifetime from the three-dimensional FEA model through ANSYS Workbench transient analysis. The three-dimensional gear FEA dynamic model with the subsurface crack is built through dividing the gears into several small elements. The calculation of the total cycles of the elements is proposed based on the time-varying accumulated plastic strain, which then will be used to calculate the subsurface crack propagation lifetime. During this process, the demonstration from a subsurface crack to a spall can be uncovered. In addition, different sizes of the elements around the subsurface crack are compared in this paper. The influences of the frictional coefficient and external torque on the crack propagation lifetime are also discussed. The results show that the lifetime of crack propagation decreases significantly when the external load T increasing from 100 N m to 150 N m. Given from the distributions of the accumulated plastic strain, the lifetime shares no significant difference when the frictional coefficient f ranging in 0.04-0.06.

  11. Implicit Three-Dimensional Geo-Modelling Based on HRBF Surface

    Science.gov (United States)

    Gou, J.; Zhou, W.; Wu, L.

    2016-10-01

    Three-dimensional (3D) geological models are important representations of the results of regional geological surveys. However, the process of constructing 3D geological models from two-dimensional (2D) geological elements remains difficult and time-consuming. This paper proposes a method of migrating from 2D elements to 3D models. First, the geological interfaces were constructed using the Hermite Radial Basis Function (HRBF) to interpolate the boundaries and attitude data. Then, the subsurface geological bodies were extracted from the spatial map area using the Boolean method between the HRBF surface and the fundamental body. Finally, the top surfaces of the geological bodies were constructed by coupling the geological boundaries to digital elevation models. Based on this workflow, a prototype system was developed, and typical geological structures (e.g., folds, faults, and strata) were simulated. Geological modes were constructed through this workflow based on realistic regional geological survey data. For extended applications in 3D modelling of other kinds of geo-objects, mining ore body models and urban geotechnical engineering stratum models were constructed by this method from drill-hole data. The model construction process was rapid, and the resulting models accorded with the constraints of the original data.

  12. Investigation on a gas-liquid ejector using three-dimensional CFD model

    Science.gov (United States)

    Kang, S. H.; Song, X. G.; Park, Y. C.

    2012-11-01

    This paper is focusing on the numeral study of a gas-liquid ejector used for ballast water treatment. The gasliquid ejector is investigated through steady three-dimensional multiphase CFD analysis with commercial software ANSYS-CFX 13.0. Water as the primary fluid is driven through the driving nozzle and air is ejected into as the second gas instead of the ozone in real application. Several turbulence models such as Standard k-ɛ model, RNG k-ɛ model, SST model and k-ω model, and different mesh size and compared extensively with the experimental results to eliminate the influence of the auxiliary system, turbulence models and mesh generation. The appropriate numerical model in terms of the best combination of turbulence model and mesh size are used in the subsequent research the study the influence of the operating condition such as the driving pressure/velocity and the back pressure of the ejector on its performance. The results provide deep insight on the influence of various factors on the performance of gas-liquid ejector. And the proposed numerical model will be very helpful in the further design optimization of the gas-liquid ejectors.

  13. Building a three-dimensional model of the upper gastrointestinal tract for computer simulations of swallowing.

    Science.gov (United States)

    Gastelum, Alfonso; Mata, Lucely; Brito-de-la-Fuente, Edmundo; Delmas, Patrice; Vicente, William; Salinas-Vázquez, Martín; Ascanio, Gabriel; Marquez, Jorge

    2016-03-01

    We aimed to provide realistic three-dimensional (3D) models to be used in numerical simulations of peristaltic flow in patients exhibiting difficulty in swallowing, also known as dysphagia. To this end, a 3D model of the upper gastrointestinal tract was built from the color cryosection images of the Visible Human Project dataset. Regional color heterogeneities were corrected by centering local histograms of the image difference between slices. A voxel-based model was generated by stacking contours from the color images. A triangle mesh was built, smoothed and simplified. Visualization tools were developed for browsing the model at different stages and for virtual endoscopy navigation. As result, a computer model of the esophagus and the stomach was obtained, mainly for modeling swallowing disorders. A central-axis curve was also obtained for virtual navigation and to replicate conditions relevant to swallowing disorders modeling. We show renderings of the model and discuss its use for simulating swallowing as a function of bolus rheological properties. The information obtained from simulation studies with our model could be useful for physicians in selecting the correct nutritional emulsions for patients with dysphagia.

  14. Software Package \\Nesvetay-3D" for modeling three-dimensional flows of monatomic rarefied gas

    Directory of Open Access Journals (Sweden)

    V. A. Titarev

    2014-01-01

    Full Text Available Analysis of three-dimensional rarefied gas flowsin microdevices (micropipes, micropumps etc and over re-entry vehicles requires development of methods of computational modelling. One of such methods is the direct numerical solution of the Boltzmann kinetic equation for the velocity distribution function with either exact or approximate (model collision integral. At present, for flows of monatomic rarefied gas the Shakhov model kinetic equation, also called S-model, has gained wide-spread use. The equation can be regarded as a model equation of the incomplete thirdorder approximation. Despite its relative simplicity, the S-model is still a complicated integrodifferential equation of high dimension. The numerical solution of such an equation requires high-accuracy parallel methods.The present work is a review of recent results concerning the development and application of three-dimensional computer package Nesvetay-3D intended for modelling of rarefied gas flows. The package solves Boltzmann kinetic equation with the BGK (Krook and Shakhov model collision integrals using the discrete velocity approach. Calculations are carried out in non-dimensional variables. A finite integration domain and a mesh are introduced in the molecular velocity space. Next, the kinetic equation is re-written as a system of kinetic equations for each of the discrete velocities. The system is solved using an implicit finite-volume method of Godunov type. The steady-state solution is computed by a time marching method. High order of spatial accuracy is achieved by using a piece-wise linear representation of the distribution function in each spatial cell. In general, the coefficients of such an approximation are found using the least-square method. Arbitrary unstructured meshes in the physical space can be used in calculations, which allow considering flows over objects of general geometrical shape. Conservative property of the method with respect to the model collision

  15. The Three-dimensional Geodynamic Model of The Pechenga Ore District (baltic Shield, Russia)

    Science.gov (United States)

    Lobanov, K.; Kazansky, V.

    The drilling and investigation of the Kola superdeep borehole SG-3 for the first time provided direct data on the structure and composition of the ancient continental crust at previously inaccessible depths. They stimulated the elaboration of alternative three- dimensional models of the Pechenga ore district equally. These models consider the Pechenga structure that hosts large sulfide copper-nickel deposits as a graben-syncline, asymmetrical syncline, explosive volcanic center, and two-continent collision suture zone. The paper comprises the reappraisal of the alternative models and the charac- teristics of an integrated three-dimensional geodynamic model of the Pechenga ore district. Rock density and their anisotropy in elastic properties were used as the main parameters for the formalized description of the borehole SG-3 section and the refer- ence profile on the day surface. The first parameter reflects the rocks' lithology, the second accounts for the intensity of synmetamorphic tectonic deformations. In addi- tion, new age datings and morphology of the gravity field of the Pechenga district were considered. The computer-based technology insured reappraisal of the alterna- tive models by comparison of observed and calculated gravity profiles going through the borehole SG-3. The constraints of the proposed integrated model are based both on the investigations of the borehole SG-3 and on the additional surface studies. The model regards the Pechenga ore district as a horizontal section of a mantle-derived volcano-plutonic ore-forming system of the central type. The model defines the north- ern limb of the Pechenga structure as an imbricated fragment of a volcanic caldera and describes its southern limb as a combination of a sheeted monocline in a jux- taposition with rheomorphic granitoid domes. Development of the system was pre- ceded by rifting of the consolidated sialic crust. The model implies a co-genetic re- lationship between the Early Proterozoic

  16. A Three-Dimensional Cell Culture Model To Study Enterovirus Infection of Polarized Intestinal Epithelial Cells.

    Science.gov (United States)

    Drummond, Coyne G; Nickerson, Cheryl A; Coyne, Carolyn B

    2016-01-01

    Despite serving as the primary entry portal for coxsackievirus B (CVB), little is known about CVB infection of the intestinal epithelium, owing at least in part to the lack of suitable in vivo models and the inability of cultured cells to recapitulate the complexity and structure associated with the gastrointestinal (GI) tract. Here, we report on the development of a three-dimensional (3-D) organotypic cell culture model of Caco-2 cells to model CVB infection of the gastrointestinal epithelium. We show that Caco-2 cells grown in 3-D using the rotating wall vessel (RWV) bioreactor recapitulate many of the properties of the intestinal epithelium, including the formation of well-developed tight junctions, apical-basolateral polarity, brush borders, and multicellular complexity. In addition, transcriptome analyses using transcriptome sequencing (RNA-Seq) revealed the induction of a number of genes associated with intestinal epithelial differentiation and/or intestinal processes in vivo when Caco-2 cells were cultured in 3-D. Applying this model to CVB infection, we found that although the levels of intracellular virus production were similar in two-dimensional (2-D) and 3-D Caco-2 cell cultures, the release of infectious CVB was enhanced in 3-D cultures at early stages of infection. Unlike CVB, the replication of poliovirus (PV) was significantly reduced in 3-D Caco-2 cell cultures. Collectively, our studies show that Caco-2 cells grown in 3-D using the RWV bioreactor provide a cell culture model that structurally and transcriptionally represents key aspects of cells in the human GI tract and can thus be used to expand our understanding of enterovirus-host interactions in intestinal epithelial cells. IMPORTANCE Coxsackievirus B (CVB), a member of the enterovirus family of RNA viruses, is associated with meningitis, pericarditis, diabetes, dilated cardiomyopathy, and myocarditis, among other pathologies. CVB is transmitted via the fecal-oral route and encounters the

  17. Three-dimensional Keplerian orbit-superposition models of the nucleus of M31

    CERN Document Server

    Brown, Calum K; 10.1093/mnras/stt104

    2013-01-01

    We present three-dimensional eccentric disc models of the nucleus of M31, modelling the disc as a linear combination of thick rings of massless stars orbiting in the potential of a central black hole. Our models are nonparametric generalisations of the parametric models of Peiris & Tremaine. The models reproduce well the observed WFPC2 photometry, the detailed line-of-sight velocity distributions from STIS observations along P1 and P2, together with the qualitative features of the OASIS kinematic maps. We confirm Peiris & Tremaine's finding that nuclear discs aligned with the larger disc of M31 are strongly ruled out. Our optimal model is inclined at 57 degrees with respect to the line of sight of M31 and has a position angle of 55 degrees. It has a central black hole of mass 10^8 solar masses, and, when viewed in three dimensions, shows a clear enhancement in the density of stars around the black hole. The distribution of orbit eccentricities in our models is similar to Peiris & Tremaine's model,...

  18. Atomic quantum simulation of a three-dimensional U(1) gauge-Higgs model

    CERN Document Server

    Kuno, Yoshihito; Kasamatsu, Kenichi; Ichinose, Ikuo; Matsui, Tetsuo

    2016-01-01

    In this paper, we study atomic quantum simulations of a U(1) gauge-Higgs model on a three-dimensional (3D) spatial lattice. We start from an extended 3D Bose-Hubbard model with nearest-neighbor repulsions and show that it can simulate a U(1) gauge-Higgs model with next nearest-neighbor Higgs couplings. Here the phase of the boson variable on each site of the optical lattice describes the vector potential on each link of the gauge-model lattice. To determine the phase diagram of the gauge-Higgs model at a zero temperature, we perform Monte-Carlo simulations of the corresponding 3+1-dimensional U(1) gauge-Higgs model, and obtain the three phases, i.e., the confinement, Coulomb and Higgs phases. To investigate the dynamical properties of the gauge-Higgs model, we apply the Gross-Pitaevskii equations to the extended Bose-Hubbard model. We simulate the time-evolution of an electric flux initially put on a straight line connecting two external point charges. We also calculate the potential energy between this pair ...

  19. A three-dimensional finite element model for biomechanical analysis of the hip.

    Science.gov (United States)

    Chen, Guang-Xing; Yang, Liu; Li, Kai; He, Rui; Yang, Bin; Zhan, Yan; Wang, Zhi-Jun; Yu, Bing-Nin; Jian, Zhe

    2013-11-01

    The objective of this study was to construct a three-dimensional (3D) finite element model of the hip. The images of the hip were obtained from Chinese visible human dataset. The hip model includes acetabular bone, cartilage, labrum, and bone. The cartilage of femoral head was constructed using the AutoCAD and Solidworks software. The hip model was imported into ABAQUS analysis system. The contact surface of the hip joint was meshed. To verify the model, the single leg peak force was loaded, and contact area of the cartilage and labrum of the hip and pressure distribution in these structures were observed. The constructed 3D hip model reflected the real hip anatomy. Further, this model reflected biomechanical behavior similar to previous studies. In conclusion, this 3D finite element hip model avoids the disadvantages of other construction methods, such as imprecision of cartilage construction and the absence of labrum. Further, it provides basic data critical for accurately modeling normal and abnormal loads, and the effects of abnormal loads on the hip.

  20. Three Dimensional Large Eddy Simulation Model of Turbulence in a Meandering Channel

    Science.gov (United States)

    Akahori, R.; Schmeeckle, M. W.

    2002-12-01

    Recent research has shown that intermittency caused by large-scale turbulence structures in rivers can be critical to accurate prediction of the sediment transport field. These large-scale turbulence structures are inherently three-dimensional. This is especially true in a river meander where strong secondary flows affect not only the three-dimensional, time-averaged flow structure, but also the process of large-scale turbulent eddy generation. It is very difficult to directly measure the turbulence field in a river except at the water surface or a few points in the interior of the flow. Numerical simulation of turbulence is a powerful tool, because it can provide information about the non-averaged flow at each grid point. Many previous researchers have calculated the time-averaged flow in a meandering channel, and obtained useful results. However, simulations of turbulence in meandering channels have been restricted to two dimensions. Therefore, they have a problem in accurately reproducing important features of the flow. We present a 3-dimenstional turbulent model for the numerical calculation of channel flow. The turbulence cannot be resolved at scales smaller than the channel grid, and we therefore parameterize the effects of small scale turbulence using standard Large Eddy Simulation (LES) assumptions. A Body Fitted Coordinate (BFC) system is employed to fit the irregular boundaries of natural channels. To solve the Navier-Stokes equations on the finite difference mesh, we employ the Cubic-Interpolated Propagation (CIP) method. The CIP method precisely solves the convective acceleration terms without numerical diffusion.

  1. A three-dimensional deformable model for segmentation of human prostate from ultrasound images.

    Science.gov (United States)

    Ghanei, A; Soltanian-Zadeh, H; Ratkewicz, A; Yin, F F

    2001-10-01

    Segmentation of human prostate from ultrasound (US) images is a crucial step in radiation therapy, especially in real-time planning for US image-guided prostate seed implant. This step is critical to determine the radioactive seed placement and to ensure the adequate dose coverage of prostate. However, due to the low contrast of prostate and very low signal-to-noise ratio in US images, this task remains as an obstacle. The manual segmentation of this object is time consuming and highly subjective. In this work, we have proposed a three-dimensional (3D) deformable surface model for automatic segmentation of prostate. The model has a discrete structure made from a set of vertices in the 3D space that form triangle facets. The model converges from an initial shape to its equilibrium iteratively, by a weighted sum of the internal and external forces. Internal forces are based on the local curvature of the surface and external forces are extracted from the volumetric image data by applying an appropriate edge filter. We have also developed a method for initialization of the model from a few initial contours that are drawn on different slices. During the deformation, a resampling procedure is used to maintain the resolution of the model. The entire model is applied in a multiscale scheme, which increases the robustness and speed, and guarantees a better convergence. The model is tested on real clinical data and initial results are very promising.

  2. Three-dimensional electromagnetic model of the pulsed-power Z-pinch accelerator

    Science.gov (United States)

    Rose, D. V.; Welch, D. R.; Madrid, E. A.; Miller, C. L.; Clark, R. E.; Stygar, W. A.; Savage, M. E.; Rochau, G. A.; Bailey, J. E.; Nash, T. J.; Sceiford, M. E.; Struve, K. W.; Corcoran, P. A.; Whitney, B. A.

    2010-01-01

    A three-dimensional, fully electromagnetic model of the principal pulsed-power components of the 26-MA ZR accelerator [D. H. McDaniel , in Proceedings of the 5th International Conference on Dense Z-Pinches (AIP, New York, 2002), p. 23] has been developed. This large-scale simulation model tracks the evolution of electromagnetic waves through the accelerator’s intermediate-storage capacitors, laser-triggered gas switches, pulse-forming lines, water switches, triplate transmission lines, and water convolute to the vacuum insulator stack. The insulator-stack electrodes are coupled to a transmission-line circuit model of the four-level magnetically insulated vacuum-transmission-line section and double-post-hole convolute. The vacuum-section circuit model is terminated by a one-dimensional self-consistent dynamic model of an imploding z-pinch load. The simulation results are compared with electrical measurements made throughout the ZR accelerator, and are in good agreement with the data, especially for times until peak load power. This modeling effort demonstrates that 3D electromagnetic models of large-scale, multiple-module, pulsed-power accelerators are now computationally tractable. This, in turn, presents new opportunities for simulating the operation of existing pulsed-power systems used in a variety of high-energy-density-physics and radiographic applications, as well as even higher-power next-generation accelerators before they are constructed.

  3. A three-dimensional model of vocal fold abduction/adduction

    Science.gov (United States)

    Hunter, Eric J.; Titze, Ingo R.; Alipour, Fariborz

    2004-04-01

    A three-dimensional biomechanical model of tissue deformation was developed to simulate dynamic vocal fold abduction and adduction. The model was made of 1721 nearly incompressible finite elements. The cricoarytenoid joint was modeled as a rocking-sliding motion, similar to two concentric cylinders. The vocal ligament and the thyroarytenoid muscle's fiber characteristics were implemented as a fiber-gel composite made of an isotropic ground substance imbedded with fibers. These fibers had contractile and/or passive nonlinear stress-strain characteristics. The verification of the model was made by comparing the range and speed of motion to published vocal fold kinematic data. The model simulated abduction to a maximum glottal angle of about 31°. Using the posterior-cricoarytenoid muscle, the model produced an angular abduction speed of 405° per second. The system mechanics seemed to favor abduction over adduction in both peak speed and response time, even when all intrinsic muscle properties were kept identical. The model also verified the notion that the vocalis and muscularis portions of the thyroarytenoid muscle play significantly different roles in posturing, with the muscularis portion having the larger effect on arytenoid movement. Other insights into the mechanisms of abduction/adduction were given.

  4. Three-dimensional finite element models of the human pubic symphysis with viscohyperelastic soft tissues.

    Science.gov (United States)

    Li, Zuoping; Alonso, Jorge E; Kim, Jong-Eun; Davidson, James S; Etheridge, Brandon S; Eberhardt, Alan W

    2006-09-01

    Three-dimensional finite element (FE) models of human pubic symphyses were constructed from computed tomography image data of one male and one female cadaver pelvis. The pubic bones, interpubic fibrocartilaginous disc and four pubic ligaments were segmented semi-automatically and meshed with hexahedral elements using automatic mesh generation schemes. A two-term viscoelastic Prony series, determined by curve fitting results of compressive creep experiments, was used to model the rate-dependent effects of the interpubic disc and the pubic ligaments. Three-parameter Mooney-Rivlin material coefficients were calculated for the discs using a heuristic FE approach based on average experimental joint compression data. Similarly, a transversely isotropic hyperelastic material model was applied to the ligaments to capture average tensile responses. Linear elastic isotropic properties were assigned to bone. The applicability of the resulting models was tested in bending simulations in four directions and in tensile tests of varying load rates. The model-predicted results correlated reasonably with the joint bending stiffnesses and rate-dependent tensile responses measured in experiments, supporting the validity of the estimated material coefficients and overall modeling approach. This study represents an important and necessary step in the eventual development of biofidelic pelvis models to investigate symphysis response under high-energy impact conditions, such as motor vehicle collisions.

  5. Simplified three-dimensional model provides anatomical insights in lizards' caudal autotomy as printed illustration

    Directory of Open Access Journals (Sweden)

    JOANA D.C.G. DE AMORIM

    2015-03-01

    Full Text Available Lizards' caudal autotomy is a complex and vastly employed antipredator mechanism, with thorough anatomic adaptations involved. Due to its diminished size and intricate structures, vertebral anatomy is hard to be clearly conveyed to students and researchers of other areas. Three-dimensional models are prodigious tools in unveiling anatomical nuances. Some of the techniques used to create them can produce irregular and complicated forms, which despite being very accurate, lack didactical uniformity and simplicity. Since both are considered fundamental characteristics for comprehension, a simplified model could be the key to improve learning. The model here presented depicts the caudal osteology of Tropidurus itambere, and was designed to be concise, in order to be easily assimilated, yet complete, not to compromise the informative aspect. The creation process requires only basic skills in manipulating polygons in 3D modeling softwares, in addition to the appropriate knowledge of the structure to be modeled. As reference for the modeling, we used microscopic observation and a photograph database of the caudal structures. This way, no advanced laboratory equipment was needed and all biological materials were preserved for future research. Therefore, we propose a wider usage of simplified 3D models both in the classroom and as illustrations for scientific publications.

  6. The learning rate in three dimensional high definition video assisted microvascular anastomosis in a rat model.

    Science.gov (United States)

    Kotsougiani, Dimitra; Hundepool, Caroline A; Bulstra, Liselotte F; Shin, Delaney M; Shin, Alexander Y; Bishop, Allen T

    2016-11-01

    Three-dimensional (3D) high definition (HD) video systems are changing microsurgical practice by providing stereoscopic imaging not only for the surgeon and first assistant using the binocular microscope, but also for others involved in the surgery. The purpose of this study was to evaluate the potential to replace the binocular microscope for microarterial anastomoses and assess the rate of learning based on surgeons' experience. Two experienced and two novice microsurgeons performed a total of 88 rat femoral arterial anastomoses: 44 using a 3D HD video device ('Trenion', Carl Zeiss Meditech) and 44, a binocular microscope. We evaluated anastomosis time and modified OSATS scores as well as the subjects' preference for comfort, image adequacy and technical ease. Experienced microsurgeons showed a steep learning curve for anastomosis times with equivalent OSATS scores for both systems. However, prolonged anastomosis times were required when using the novel 3D-HD system rather than direct binocular vision. Comparable learning rates for anastomosis time were demonstrated for novice microsurgeons and modified OSATS scores did not differ between the different viewing technologies. All microsurgeons reported improved comfort for the 3D HD video system but found the image quality of the conventional microscope superior, facilitating technical ease. The present study demonstrates the potential of 3D HD video systems to replace current binocular microscopes, offering qualitatively-equivalent microvascular anastomosis with improved comfort for experienced microsurgeons. However, image quality was rated inferior with the 3D HD system resulting in prolonged anastomosis times. Microsurgical skill acquisition in novice microsurgeons was not influenced by the viewing system used.

  7. Inter-comparison of three-dimensional models of volcanic plumes

    Science.gov (United States)

    Suzuki, Y. J.; Costa, A.; Cerminara, M.; Esposti Ongaro, T.; Herzog, M.; Van Eaton, A. R.; Denby, L. C.

    2016-10-01

    We performed an inter-comparison study of three-dimensional models of volcanic plumes. A set of common volcanological input parameters and meteorological conditions were provided for two kinds of eruptions, representing a weak and a strong eruption column. From the different models, we compared the maximum plume height, neutral buoyancy level (where plume density equals that of the atmosphere), and level of maximum radial spreading of the umbrella cloud. We also compared the vertical profiles of eruption column properties, integrated across cross-sections of the plume (integral variables). Although the models use different numerical procedures and treatments of subgrid turbulence and particle dynamics, the inter-comparison shows qualitatively consistent results. In the weak plume case (mass eruption rate 1.5 × 106 kg s- 1), the vertical profiles of plume properties (e.g., vertical velocity, temperature) are similar among models, especially in the buoyant plume region. Variability among the simulated maximum heights is 20%, whereas neutral buoyancy level and level of maximum radial spreading vary by 10%. Time-averaging of the three-dimensional (3D) flow fields indicates an effective entrainment coefficient around 0.1 in the buoyant plume region, with much lower values in the jet region, which is consistent with findings of small-scale laboratory experiments. On the other hand, the strong plume case (mass eruption rate 1.5 × 109 kg s- 1) shows greater variability in the vertical plume profiles predicted by the different models. Our analysis suggests that the unstable flow dynamics in the strong plume enhances differences in the formulation and numerical solution of the models. This is especially evident in the overshooting top of the plume, which extends a significant portion ( 1/8) of the maximum plume height. Nonetheless, overall variability in the spreading level and neutral buoyancy level is 20%, whereas that of maximum height is 10%. This inter

  8. Three-dimensional FDTD Modeling of Earth-ionosphere Cavity Resonances

    Science.gov (United States)

    Yang, H.; Pasko, V. P.

    2003-12-01

    Resonance properties of the earth-ionosphere cavity were first predicted by W. O. Schumann in 1952 [Schumann, Z. Naturforsch. A, 7, 149, 1952]. Since then observations of extremely low frequency (ELF) signals in the frequency range 1-500 Hz have become a powerful tool for monitoring of global lightning activity and planetary scale variability of the lower ionosphere, as well as, in recent years, for location and remote sensing of sprites, jets and elves and associated lightning discharges [e.g., Sato et al., JASTP, 65, 607, 2003; Su et al., Nature, 423, 974, 2003; and references cited therein]. The simplicity and flexibility of finite difference time domain (FDTD) technique for finding first principles solutions of electromagnetic problems in a medium with arbitrary inhomogeneities and ever-increasing computer power make FDTD an excellent candidate to be the technique of the future in development of realistic numerical models of VLF/ELF propagation in Earth-ionosphere waveguide [Cummer, IEEE Trans. Antennas Propagat., 48, 1420, 2000], and several reports about successful application of the FDTD technique for solution of related problems have recently appeared in the literature [e.g., Thevenot et al., Ann. Telecommun., 54, 297, 1999; Cummer, 2000; Berenger, Ann. Telecommun., 57, 1059, 2002, Simpson and Taflove, IEEE Antennas Wireless Propagat. Lett., 1, 53, 2002]. In this talk we will present results from a new three-dimensional spherical FDTD model, which is designed for studies of ELF electromagnetic signals under 100 Hz in the earth-ionosphere cavity. The model accounts for a realistic latitudinal and longitudinal variation of ground conductivity (i.e., for the boundaries between oceans and continents) by employing a broadband surface impedance technique proposed in [Breggs et al., IEEE Trans. Antenna Propagat., 41, 118, 1993]. The realistic distributions of atmospheric/lower ionospheric conductivity are derived from the international reference ionosphere model

  9. Utilisation of three-dimensional printed heart models for operative planning of complex congenital heart defects.

    Science.gov (United States)

    Olejník, Peter; Nosal, Matej; Havran, Tomas; Furdova, Adriana; Cizmar, Maros; Slabej, Michal; Thurzo, Andrej; Vitovic, Pavol; Klvac, Martin; Acel, Tibor; Masura, Jozef

    2017-01-01

    To evaluate the accuracy of the three-dimensional (3D) printing of cardiovascular structures. To explore whether utilisation of 3D printed heart replicas can improve surgical and catheter interventional planning in patients with complex congenital heart defects. Between December 2014 and November 2015 we fabricated eight cardiovascular models based on computed tomography data in patients with complex spatial anatomical relationships of cardiovascular structures. A Bland-Altman analysis was used to assess the accuracy of 3D printing by comparing dimension measurements at analogous anatomical locations between the printed models and digital imagery data, as well as between printed models and in vivo surgical findings. The contribution of 3D printed heart models for perioperative planning improvement was evaluated in the four most representative patients. Bland-Altman analysis confirmed the high accuracy of 3D cardiovascular printing. Each printed model offered an improved spatial anatomical orientation of cardiovascular structures. Current 3D printers can produce authentic copies of patients` cardiovascular systems from computed tomography data. The use of 3D printed models can facilitate surgical or catheter interventional procedures in patients with complex congenital heart defects due to better preoperative planning and intraoperative orientation.

  10. A new three-dimensional magneto-viscoelastic model for isotropic magnetorheological elastomers

    Science.gov (United States)

    Agirre-Olabide, I.; Lion, A.; Elejabarrieta, M. J.

    2017-03-01

    In this work, a four-parameter fractional derivative viscoelastic model was developed to describe the dynamic shear behaviour of magnetorheological elastomers (MREs) as a function of the matrix, particle content and magnetic field. The material parameters were obtained from experimental data measured with a Physica MCR 501 rheometer from the Anton Paar Company, equipped with a magnetorheological cell. The synthetised isotropic MRE samples were based on room-temperature vulcanising silicone rubber and spherical carbonyl iron powder micro particles as fillers, and seven volumetric particle contents were studied. The influence of particle contents was included in each parameter of the four-parameter fractional derivative model. The dependency of the storage modulus as a function of an external magnetic field (magnetorheological (MR) effect) was studied, and a dipole–dipole interaction model was used. A new three-dimensional magneto-viscoelastic model was developed to couple the viscoelastic model, the particle-matrix interaction and the magneto-induced modulus model, which predicts the influence of the magnetic field and the particle content in the MR effect of isotropic MREs.

  11. Transferability of a Three-Dimensional Air Quality Model between Two Different Sites in Complex Terrain.

    Science.gov (United States)

    Lange, Rolf

    1989-07-01

    The three-dimensional, diagnostic, particle-in-cell transport and diffusion model MATHEW/ADPIC is used to test its transferability from one site in complex terrain to another with different characteristics, under stable nighttime drainage flow conditions. The two sites were subject to extensive drainage flow tracer experiments under the multilaboratory Atmospheric Studies in Complex Terrain (ASCOT) program: the first being a valley in the Geysers geothermal region of northern California, and the second a canyon in western Colorado. The domain in each case is approximately 10 × 10 km. The 1980 Geysers model evaluation is only quoted. The 1984 Brush Creek model evaluation is described in detail.Results from comparing computed with measured concentrations from a variety of tracer releases indicate that 52% of the 4531 samples from five experiments in Brush Creek and 50% of the 831 samples from four experiments in the Geysers agreed within a factor of 5. When an angular 10° uncertainty, consistent with anemometer reliability limits in complex terrain, was allowed to be applied to the model results, model performance improved such that 78% of samples compared within a factor of 5 for Brush Creek and 77% for the Geysers. Looking at the range of other factors of concentration ratios, results indicate that the model is satisfactorily transferable without tuning it to a specific site.

  12. Characterization and three-dimensional reconstruction of synthetic bone model foams

    Energy Technology Data Exchange (ETDEWEB)

    Gómez, S. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Vlad, M.D. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Faculty of Medical Bioengineering, “Gr. T. Popa” University of Medicine and Pharmacy, Str. Kogalniceanu 9-13, 700454 Iasi (Romania); López, J. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Navarro, M. [Centre de Biotecnologia Animal i de Teràpia Gènica (CBATEG), Departament de Sanitat i d' Anatomia Animals, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Cerdanyola del Vallès (Spain); Fernández, E., E-mail: enrique.fernandez@upc.edu [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain)

    2013-08-01

    Sawbones© open-cell foams with different porosity grades are being used as synthetic bone-like models for in vitro mechanical and infiltration experiments. However, a comprehensive characterization of these foams is not available and there is a lack of reliable information about them. For this reason two of these foams (Refs. 1522-505 and -507) have been characterized at the micro architectural level by scanning electron microscopy, computed tomography and image data analysis. BoneJ open software and ImageJ open software were used to obtain the characteristic histomorphometric parameters and the three dimensional virtual models of the foams. The results showed that both foams, while having different macro porosities, appeared undistinguishable at the micro scale. Moreover, the micro structural features resembled those of osteoporotic rather than healthy trabecular bone. It is concluded that Sawbones© foams behave reasonably as synthetic bone-like models. Consequently, their use is recommended for in vitro comparison purposes of both mechanical and infiltration testing performed in real vertebra. Finally, the virtual models obtained, which are available under request, can favour comparisons between future self-similar in vitro experiments and computer simulations. - Highlights: • Sawbones© model foams have been scanned by μ-CT. • Histomorphometric indices and 3D virtual models have been obtained. • The results will be of use to understand biocement vertebra infiltration studies.

  13. Development of a percentile based three-dimensional model of the buttocks in computer system

    Science.gov (United States)

    Wang, Lijing; He, Xueli; Li, Hongpeng

    2016-05-01

    There are diverse products related to human buttocks, which need to be designed, manufactured and evaluated with 3D buttock model. The 3D buttock model used in present research field is just simple approximate model similar to human buttocks. The 3D buttock percentile model is highly desired in the ergonomics design and evaluation for these products. So far, there is no research on the percentile sizing system of human 3D buttock model. So the purpose of this paper is to develop a new method for building three-dimensional buttock percentile model in computer system. After scanning the 3D shape of buttocks, the cloud data of 3D points is imported into the reverse engineering software (Geomagic) for the reconstructing of the buttock surface model. Five characteristic dimensions of the buttock are measured through mark-points after models being imported into engineering software CATIA. A series of space points are obtained by the intersecting of the cutting slices and 3D buttock surface model, and then are ordered based on the sequence number of the horizontal and vertical slices. The 1st, 5th, 50th, 95th, 99th percentile values of the five dimensions and the spatial coordinate values of the space points are obtained, and used to reconstruct percentile buttock models. This research proposes a establishing method of percentile sizing system of buttock 3D model based on the percentile values of the ischial tuberosities diameter, the distances from margin to ischial tuberosity and the space coordinates value of coordinate points, for establishing the Nth percentile 3D buttock model and every special buttock types model. The proposed method also serves as a useful guidance for the other 3D percentile models establishment for other part in human body with characteristic points.

  14. A Basic Protein Comparative Three-Dimensional Modeling Methodological Workflow Theory and Practice.

    Science.gov (United States)

    Bitar, Mainá; Franco, Glória Regina

    2014-01-01

    When working with proteins and studying its properties, it is crucial to have access to the three-dimensional structure of the molecule. If experimentally solved structures are not available, comparative modeling techniques can be used to generate useful protein models to subsidize structure-based research projects. In recent years, with Bioinformatics becoming the basis for the study of protein structures, there is a crescent need for the exposure of details about the algorithms behind the softwares and servers, as well as a need for protocols to guide in silico predictive experiments. In this article, we explore different steps of the comparative modeling technique, such as template identification, sequence alignment, generation of candidate structures and quality assessment, its peculiarities and theoretical description. We then present a practical step-by-step workflow, to support the Biologist on the in silico generation of protein structures. Finally, we explore further steps on comparative modeling, presenting perspectives to the study of protein structures through Bioinformatics. We trust that this is a thorough guide for beginners that wish to work on the comparative modeling of proteins.

  15. Three dimensional musculoskeletal modelling of the abdominal crunch resistance training exercise.

    Science.gov (United States)

    Nolte, Kim; Krüger, Pieter E; Els, P Schalk; Nolte, Heinrich

    2013-01-01

    The aim of this study was to evaluate the benefits and limitations of using three dimensional (3D) musculoskeletal modelling (LifeModeler) in assessing the safety and efficacy of exercising on an abdominal crunch resistance training machine. Three anthropometric cases were studied, representing a 5th percentile female, and 50th percentile and 95th percentile male. Results indicated that the LifeModeler default model was capable of solving the forward dynamics simulations without adjustments. The modelling was able to indicate high risk for back injury when performing the abdominal crunch exercise as a result of the unacceptable intervertebral joint loading that occurs during the exercise. Individuals with small anthropometric dimensions such as some females and children cannot be accommodated suitably on the abdominal crunch machine which negatively impacts exercise posture and technique. Hip flexor muscle contribution in the execution of the exercise for the 5th percentile female was substantial thus reducing the efficacy of the exercise in isolating the abdominal muscles.

  16. Three-dimensional modeling of borehole data cored from engineering rock mass

    Institute of Scientific and Technical Information of China (English)

    HE Manchao; LI Xueyuan; LIU Bin; XU Nengxiong

    2007-01-01

    Vast data from the drilling and geophysical prospecting are reliable original information to describe the space state of engineering rock mass,and one of the main difficulties in three-dimensional (3D) modeling of engineering rock mass is the processing of the primary data.From the viewpoint of 3D modeling,the engineering rock masses are classified as four basic types according to their geometric characteristics of geologic structure:(1) continuum rock mass;(2) discontinuous rock mass;(3) overturned fold rock mass and (4) intrusive rock mass.Because drilling data are very important to describe the characters of multi-scale of the spatial data for rock mass,the rule of how to process drilling data is developed to help appropriately display them in the viewpoint of 3D space.According to the characteristics of rock mass layers,the processing method of drilling data for 3D modeling of engineering rock masses,along with the layer thicknesses,is also proposed,including the evaluation rules and the extensive direction for original borehole data.By this method,the typical 3D data modeled is completed and the model form of the engineering rock mass is developed.By this example,it is finally verified that the method presented is successful and feasible to process 3D engineering rock mass.

  17. Development of three-dimensional magnetohydrodynamic model for solar corona and solar wind simulation

    Science.gov (United States)

    Yuan, Xingqiu; Trichtchenko, Larisa; Boteler, David

    Propagation of coronal mass ejections from solar surface to the Earth magnetosphere is strongly influenced by the conditions in solar corona and ambient solar wind. Thus, reliable simulation of the background solar wind is the primary task toward the development of numerical model for the transient events. In this paper we introduce a new numerical model which has been specifically designed for numerical study of the solar corona and ambient solar wind. This model is based on our recently developed three-dimensional Spherical Coordinate Adaptive Magneto-Hydro-Dynamic (MHD) code (SCA-MHD-3D) [Yuan et al., 2009]. Modifications has been done to include the observed magnetic field at the photosphere as inner boundary conditions. The energy source term together with reduced plasma gamma are used in the nonlinear MHD equations in order to simulate the solar wind acceleration from subsonic speed at solar surface to supersonic speed at the inter-heliosphere region, and the absorbing boundary conditions are used at the solar surface. This model has been applied to simulate the background solar wind condition for several different solar rotations, and comparison between the observation and model output have shown that it reproduces many features of solar wind, including open and closed magnetic fields, fast and slow solar wind speed, sector boundaries, etc.

  18. Spontaneous alignment of frustrated bonds in an anisotropic, three-dimensional Ising model

    Science.gov (United States)

    Jalabert, Rodolfo A.; Sachdev, Subir

    1991-07-01

    The Ising model on a three-dimensional cubic lattice with all plaquettes in the x-y frustrated plane is studied by use of a Monte Carlo technique; the exchange constants are of equal magnitude, but have varying signs. At zero temperature, the model has a finite entropy and no long-range order. The low-temperature phase is characterized by an order parameter measuring the openZ4 symmetry of lattice rotations which is invariant under Mattis gauge transformation; fluctuations lead to the alignment of frustrated bonds into columns and a fourfold degeneracy. An additional factor-of-2 degeneracy is obtained from a global spin flip. The order vanishes at a critical temperature by a transition that appears to be in the universality class of the D=3, XY model. These results are consistent with the theoretical predictions of Blankschtein et al. This Ising model is related by duality to phenomenological models of two-dimensional frustrated quantum antiferromagnets.

  19. Ultrasonic characterization of three animal mammary tumors from three-dimensional acoustic tissue models

    Science.gov (United States)

    Mamou, Jonathan M.

    This dissertation investigated how three-dimensional (3D) tissue models can be used to improve ultrasonic tissue characterization (UTC) techniques. Anatomic sites in tissue responsible for ultrasonic scattering are unknown, which limits the potential applications of ultrasound for tumor diagnosis. Accurate 3D models of tumor tissues may help identify the scattering sites. Three mammary tumors were investigated: a rat fibroadenoma, a mouse carcinoma, and a mouse sarcoma. A 3D acoustic tissue model, termed 3D impedance map (3DZM), was carefully constructed from consecutive histologic sections for each tumor. Spectral estimates (scatterer size and acoustic concentration) were obtained from the 3DZMs and compared to the same estimates obtained with ultrasound. Scatterer size estimates for three tumors were found to be similar (within 10%). The 3DZMs were also used to extract tissue-specific scattering models. The scattering models were found to allow clear distinction between the three tumors. This distinction demonstrated that UTC techniques may be helpful for noninvasive clinical tumor diagnosis.

  20. Three-dimensional eutrophication model and application to Taihu Lake,China

    Institute of Scientific and Technical Information of China (English)

    MAO Jingqiao; CHEN Qiuwen; CHEN Yongcan

    2008-01-01

    Talhu Lake,the largest freshwater shallow lake in eastern China,has suffered from severe eutrophication over the past two decades. This research developed a three-dimensional eutrophication model to investigate the eutrophication dynamics.The model fully coupled the biological processes and hydrodynamics,and also took into account the effects of sediment release and the external loads from the tributaries.After sensitivity analyses,the key parameters were defined and then calibrated by the field observation data.The calibrated model was applied to study the seasonal primary productions and its regional differences.The comparisons between model results and field data in year 2000 indicated that the model is able to simulate the eutrophication dynamics in Taihu Lake with a reasonable accuracy.From the simulation experiments,it was found that the meteorological forcing have significant influences on the temporal variations of the eutrophication dynamics.The wind-induced circulation and sediment distribution play an important role in the spatial distribution of the algae blooms.

  1. SLC4A11 Three-Dimensional Homology Model Rationalizes Corneal Dystrophy-Causing Mutations.

    Science.gov (United States)

    Badior, Katherine E; Alka, Kumari; Casey, Joseph R

    2017-03-01

    We studied the structural effects of point mutations of a membrane protein that cause genetic disease. SLC4A11 is a membrane transport protein (OH(-) /H(+) /NH3 /H2 O) of basolateral corneal endothelium, whose mutations cause some cases of congenital hereditary endothelial dystrophy and Fuchs endothelial corneal dystrophy. We created a three-dimensional homology model of SLC4A11 membrane domain, using Band 3 (SLC4A1) crystal structure as template. The homology model was assessed in silico and by analysis of mutants designed on the basis of the model. Catalytic pathway mutants p.Glu675Gln, p.His724Arg, and p.His724Ala impaired SLC4A11 transport. p.Ala720Leu, in a region of extended structure of the proposed translocation pore, failed to mature to the cell surface. p.Gly509Lys, located in an open region at the core domain/gate domain interface, had wild-type level of transport function. The molecular phenotype of 37 corneal dystrophy-causing point mutants was rationalized, based on their location in the homology model. Four map to the substrate translocation pathway, 25 to regions of close transmembrane helix packing, three to the dimeric interface, and five lie in extramembraneous loops. The model provides a view of the spectrum of effects of disease mutations on membrane protein structure and provides a tool to analyze pathogenicity of additional newly discovered SLC4A11 mutants. © 2016 WILEY PERIODICALS, INC.

  2. A three-dimensional finite element model for the mechanics of cell-cell interactions.

    Science.gov (United States)

    Viens, Denis; Brodland, G Wayne

    2007-10-01

    Technical challenges, including significant ones associated with cell rearrangement, have hampered the development of three-dimensional finite element models for the mechanics of embryonic cells. These challenges have been overcome by a new formulation in which the contents of each cell, assumed to have a viscosity mu, are modeled using a system of orthogonal dashpots. This approach overcomes a stiffening artifact that affects more traditional models, in which space-filling viscous elements are used to model the cytoplasm. Cells are assumed to be polyhedral in geometry, and each n-sided polygonal face is subdivided into n triangles with a common node at the face center so that it needs not remain flat. A constant tension gamma is assumed to act along each cell-cell interface, and cell rearrangements occur through one of two complementary topological transformations. The formulation predicts mechanical interactions between pairs of similar or dissimilar cells that are consistent with experiments, two-dimensional simulations, contact angle theory, and intracellular pressure calculations. Simulations of the partial engulfment of one tissue type by another show that the formulation is able to model aggregates of several hundred cells without difficulty. Simulations carried out using this formulation suggest new experimental approaches for measuring cell surface tensions and interfacial tensions. The formulation holds promise as a tool for gaining insight into the mechanics of isolated or aggregated embryonic cells and for the design and interpretation of experiments that involve them.

  3. Methods: Using Three-Dimensional Culture (Spheroids) as an In Vitro Model of Tumour Hypoxia.

    Science.gov (United States)

    Leek, Russell; Grimes, David Robert; Harris, Adrian L; McIntyre, Alan

    Regions of hypoxia in tumours can be modelled in vitro in 2D cell cultures with a hypoxic chamber or incubator in which oxygen levels can be regulated. Although this system is useful in many respects, it disregards the additional physiological gradients of the hypoxic microenvironment, which result in reduced nutrients and more acidic pH. Another approach to hypoxia modelling is to use three-dimensional spheroid cultures. In spheroids, the physiological gradients of the hypoxic tumour microenvironment can be inexpensively modelled and explored. In addition, spheroids offer the advantage of more representative modelling of tumour therapy responses compared with 2D culture. Here, we review the use of spheroids in hypoxia tumour biology research and highlight the different methodologies for spheroid formation and how to obtain uniformity. We explore the challenge of spheroid analyses and how to determine the effect on the hypoxic versus normoxic components of spheroids. We discuss the use of high-throughput analyses in hypoxia screening of spheroids. Furthermore, we examine the use of mathematical modelling of spheroids to understand more fully the hypoxic tumour microenvironment.

  4. Three-Dimensional Animation Technology: a New Interactive Model Designed for the Teaching of Cryospheric Science

    Science.gov (United States)

    Porter, P. R.; Marunchak, A.

    2011-12-01

    One of the key challenges facing educators in the cryospheric sciences is to explain to students the processes that operate and the landforms that exist in relatively unfamiliar glacial environments. In many cases these environments are also largely inaccessible which can hinder field-based teaching. This is particularly the case for en-glacial and sub-glacial hydrology and the closely related topic of sub-glacial glacier dynamics, yet a full understanding of these subject areas is pivotal to overall student understanding of glaciology. An ability to visualise these unfamiliar and inaccessible environments offers a potentially powerful tool to assist student conceptualisation and comprehension. To address this we have developed a three-dimensional interactive 'virtual glacier' simulation model. Based on standards and technology established by the rapidly evolving video gaming industry, the user is presented with an interactive real-time three-dimensional environment designed to accurately portray multiple aspects of glacial environments. The user can move in all directions in the fore-field area, on the glacier surface and within en-glacial and sub-glacial drainage networks. Descent into the glacier hydrological system is via a moulin, from which the user can explore en-glacial channels linking to this moulin and ultimately descend into the sub-glacial drainage system. Various sub-glacial drainage network morphologies can then be 'explored' to aid conceptualisation and understanding and the user can navigate through drainage networks both up- and down-glacier and ultimately emerge at the portal into the fore-field environment. Interactive icons relating to features of interest are presented to the user throughout the model, prompting multimedia dialogue boxes to open. Dialogue box content (e.g. text, links to online resources, videos, journal papers, etc.) is fully customisable by the educator. This facilitates the use of the model at different academic levels

  5. Biomechanical model of the thorax under blast loading: a three dimensional numerical study.

    Science.gov (United States)

    Goumtcha, Aristide Awoukeng; Thoral-Pierre, Karine; Roth, Sébastien

    2014-12-01

    Injury mechanisms due to high speed dynamic loads, such as blasts, are not well understood. These research fields are widely investigated in the literature, both at the experimental and numerical levels, and try to answer questions about the safety and efficiency of protection devices or biomechanical traumas. At a numerical level, the development of powerful mathematical models tends to study tolerance limits and injury mechanisms in order to avoid experimental tests which cannot be easily conducted. In a military framework, developing a fighter/soldier numerical model can help to the understanding of many traumas which are specific to soldier injuries, like mines, ballistic impacts or blast traumas. The aim of this study is to investigate the consequences of violent loads in terms of human body response, submitting a developed and validated three-dimensional thorax finite element (FE) model to blast loadings. Specific formulations of FE methods are used to simulate this loading, and its consequence on the biomechanical model. Mechanical parameters such as pressure in the air field and also in internal organs are observed, and these values are compared to the experimental data in the literature. This study gives encouraging results and allows going further in soldier trauma investigations. Copyright © 2014 John Wiley & Sons, Ltd.

  6. A Three-Dimensional Water Quality Model and Its Application to Jiaozhou Bay, China

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yan; SUN Ying-lan; YU Jing; YUAN Dao-wei; ZHANG Rui-jin

    2012-01-01

    A three-dimensional coupled physical and water quality model was developed and applied to the Jiaozhou Bay to study water quality involving nutrients,biochemical oxygen demand,dissolved oxygen,and phytoplankton that are closely related to eutrophication process.The physical model is a modified ECOM-si version with inclusion of flooding/draining processes over the intertidal zone.The water quality model is based on WASP5 which quantifies processes governing internal nutrients cycling,dissolved oxygen balance and phytoplankton growth.The model was used to simulate the spatial distribution and the temporal variation of water quality in the Jiaozhou Bay for the period of May 2005 to May 2006.In addition,the effect of reduction of riverine nutrients load was simulated and evaluated.The simulated results show that under the influence of nutrients discharged from river,the concentrations of nutrients and phytoplankton were higher in the northwest and northeast of the bay,and decreased from the inner bay to the outer.Affected by strong tidal mixing,the concentrations of all state variables were vertically homogeneous except in the deeper regions where a small gradient was found.Obvious seasonal variation of phytoplankton biomass was found,which exhibited two peaks in March and July,respectively.The variation of riverine waste loads had remarkable impact on nutrients concentration in coastal areas,but slightly altered the distribution in the center of the bay.

  7. Theory for the three-dimensional Mercedes-Benz model of water.

    Science.gov (United States)

    Bizjak, Alan; Urbic, Tomaz; Vlachy, Vojko; Dill, Ken A

    2009-11-21

    The two-dimensional Mercedes-Benz (MB) model of water has been widely studied, both by Monte Carlo simulations and by integral equation methods. Here, we study the three-dimensional (3D) MB model. We treat water as spheres that interact through Lennard-Jones potentials and through a tetrahedral Gaussian hydrogen bonding function. As the "right answer," we perform isothermal-isobaric Monte Carlo simulations on the 3D MB model for different pressures and temperatures. The purpose of this work is to develop and test Wertheim's Ornstein-Zernike integral equation and thermodynamic perturbation theories. The two analytical approaches are orders of magnitude more efficient than the Monte Carlo simulations. The ultimate goal is to find statistical mechanical theories that can efficiently predict the properties of orientationally complex molecules, such as water. Also, here, the 3D MB model simply serves as a useful workbench for testing such analytical approaches. For hot water, the analytical theories give accurate agreement with the computer simulations. For cold water, the agreement is not as good. Nevertheless, these approaches are qualitatively consistent with energies, volumes, heat capacities, compressibilities, and thermal expansion coefficients versus temperature and pressure. Such analytical approaches offer a promising route to a better understanding of water and also the aqueous solvation.

  8. Manufactured solutions and the verification of three-dimensional Stokes ice-sheet models

    Directory of Open Access Journals (Sweden)

    W. Leng

    2013-01-01

    Full Text Available The manufactured solution technique is used for the verification of computational models in many fields. In this paper, we construct manufactured solutions for the three-dimensional, isothermal, nonlinear Stokes model for flows in glaciers and ice sheets. The solution construction procedure starts with kinematic boundary conditions and is mainly based on the solution of a first-order partial differential equation for the ice velocity that satisfies the incompressibility condition. The manufactured solutions depend on the geometry of the ice sheet, basal sliding parameters, and ice softness. Initial conditions are taken from the periodic geometry of a standard problem of the ISMIP-HOM benchmark tests. The upper surface is altered through the manufactured solution procedure to generate an analytic solution for the time-dependent flow problem. We then use this manufactured solution to verify a parallel, high-order accurate, finite element Stokes ice-sheet model. Simulation results from the computational model show good convergence to the manufactured analytic solution.

  9. Evaluation of three-dimensional anisotropic head model for mapping realistic electromagnetic fields of brain tissues

    Directory of Open Access Journals (Sweden)

    Woo Chul Jeong

    2015-08-01

    Full Text Available Electromagnetic fields provide fundamental data for the imaging of electrical tissue properties, such as conductivity and permittivity, in recent magnetic resonance (MR-based tissue property mapping. The induced voltage, current density, and magnetic flux density caused by externally injected current are critical factors for determining the image quality of electrical tissue conductivity. As a useful tool to identify bio-electromagnetic phenomena, precise approaches are required to understand the exact responses inside the human body subject to an injected currents. In this study, we provide the numerical simulation results of electromagnetic field mapping of brain tissues using a MR-based conductivity imaging method. First, we implemented a realistic three-dimensional human anisotropic head model using high-resolution anatomical and diffusion tensor MR images. The voltage, current density, and magnetic flux density of brain tissues were imaged by injecting 1 mA of current through pairs of electrodes on the surface of our head model. The current density map of anisotropic brain tissues was calculated from the measured magnetic flux density based on the linear relationship between the water diffusion tensor and the electrical conductivity tensor. Comparing the current density to the previous isotropic model, the anisotropic model clearly showed the differences between the brain tissues. This originates from the enhanced signals by the inherent conductivity contrast as well as the actual tissue condition resulting from the injected currents.

  10. Evaluation of three-dimensional anisotropic head model for mapping realistic electromagnetic fields of brain tissues

    Science.gov (United States)

    Jeong, Woo Chul; Wi, Hun; Sajib, Saurav Z. K.; Oh, Tong In; Kim, Hyung Joong; Kwon, Oh In; Woo, Eung Je

    2015-08-01

    Electromagnetic fields provide fundamental data for the imaging of electrical tissue properties, such as conductivity and permittivity, in recent magnetic resonance (MR)-based tissue property mapping. The induced voltage, current density, and magnetic flux density caused by externally injected current are critical factors for determining the image quality of electrical tissue conductivity. As a useful tool to identify bio-electromagnetic phenomena, precise approaches are required to understand the exact responses inside the human body subject to an injected currents. In this study, we provide the numerical simulation results of electromagnetic field mapping of brain tissues using a MR-based conductivity imaging method. First, we implemented a realistic three-dimensional human anisotropic head model using high-resolution anatomical and diffusion tensor MR images. The voltage, current density, and magnetic flux density of brain tissues were imaged by injecting 1 mA of current through pairs of electrodes on the surface of our head model. The current density map of anisotropic brain tissues was calculated from the measured magnetic flux density based on the linear relationship between the water diffusion tensor and the electrical conductivity tensor. Comparing the current density to the previous isotropic model, the anisotropic model clearly showed the differences between the brain tissues. This originates from the enhanced signals by the inherent conductivity contrast as well as the actual tissue condition resulting from the injected currents.

  11. Coupled Plasticity and Damage Modeling and Their Applications in a Three-Dimensional Eulerian Hydrocode

    Science.gov (United States)

    Burkett, Michael W.; Clancy, Sean P.; Maudlin, Paul J.; Holian, Kathleen S.

    2004-07-01

    Previously developed constitutive models and solution algorithms for continuum-level anisotropic elastoplastic material strength and an isotropic damage model TEPLA have been implemented in the three-dimensional Eulerian hydrodynamics code known as CONEJO. The anisotropic constitutive modeling is posed in an unrotated material frame of reference using the theorem of polar decomposition to compute rigid-body rotation. TEPLA is based upon the Gurson flow surface (a potential function used in conjunction with the associated flow law). The original TEPLA equation set has been extended to include anisotropic elastoplasticity and has been recast into a new implicit solution algorithm based upon an eigenvalue scheme to accommodate the anisotropy. This algorithm solves a two-by-two system of nonlinear equations using a Newton-Raphson iteration scheme. Simulations of a shaped-charge jet formation, a Taylor cylinder impact, and an explosively loaded hemishell were selected to demonstrate the utility of this modeling capability. The predicted deformation topology, plastic strain, and porosity distributions are shown for the three simulations.

  12. Three-dimensional model of a selective theophylline-binding RNA molecule

    Energy Technology Data Exchange (ETDEWEB)

    Tung, Chang-Shung; Oprea, T.I.; Hummer, G.; Garcia, A.E.

    1995-07-01

    We propose a three-dimensional (3D) model for an RNA molecule that selectively binds theophylline but not caffeine. This RNA, which was found using SELEX [Jenison, R.D., et al., Science (1994) 263:1425] is 10,000 times more specific for theophylline (Kd=320 nM) than for caffeine (Kd=3.5 mM), although the two ligands are identical except for a methyl group substituted at N7 (present only in caffeine). The binding affinity for ten xanthine-based ligands was used to derive a Comparative Molecular Field Analysis (CoMFA) model (R{sup 2} = 0.93 for 3 components, with cross-validated R{sup 2} of 0.73), using the SYBYL and GOLPE programs. A pharmacophoric map was generated to locate steric and electrostatic interactions between theophylline and the RNA binding site. This information was used to identify putative functional groups of the binding pocket and to generate distance constraints. Based on a model for the secondary structure (Jenison et al., idem), the 3D structure of this RNA was then generated using the following method: each helical region of the RNA molecule was treated as a rigid body; single-stranded loops with specific end-to-end distances were generated. The structures of RNA-xanthine complexes were studied using a modified Monte Carlo algorithm. The detailed structure of an RNA-ligand complex model, as well as possible explanations for the theophylline selectivity will be discussed.

  13. Predicting crystal growth via a unified kinetic three-dimensional partition model.

    Science.gov (United States)

    Anderson, Michael W; Gebbie-Rayet, James T; Hill, Adam R; Farida, Nani; Attfield, Martin P; Cubillas, Pablo; Blatov, Vladislav A; Proserpio, Davide M; Akporiaye, Duncan; Arstad, Bjørnar; Gale, Julian D

    2017-04-03

    Understanding and predicting crystal growth is fundamental to the control of functionality in modern materials. Despite investigations for more than one hundred years, it is only recently that the molecular intricacies of these processes have been revealed by scanning probe microscopy. To organize and understand this large amount of new information, new rules for crystal growth need to be developed and tested. However, because of the complexity and variety of different crystal systems, attempts to understand crystal growth in detail have so far relied on developing models that are usually applicable to only one system. Such models cannot be used to achieve the wide scope of understanding that is required to create a unified model across crystal types and crystal structures. Here we describe a general approach to understanding and, in theory, predicting the growth of a wide range of crystal types, including the incorporation of defect structures, by simultaneous molecular-scale simulation of crystal habit and surface topology using a unified kinetic three-dimensional partition model. This entails dividing the structure into 'natural tiles' or Voronoi polyhedra that are metastable and, consequently, temporally persistent. As such, these units are then suitable for re-construction of the crystal via a Monte Carlo algorithm. We demonstrate our approach by predicting the crystal growth of a diverse set of crystal types, including zeolites, metal-organic frameworks, calcite, urea and l-cystine.

  14. A three-dimensional laboratory steam injection model allowing in situ saturation measurements

    Energy Technology Data Exchange (ETDEWEB)

    Demiral, B.M.R.; Pettit, P.A.; Castanier, L.M.; Brigham, W.E.

    1992-08-01

    The CT imaging technique together with temperature and pressure measurements were used to follow the steam propagation during steam and steam foam injection experiments in a three dimensional laboratory steam injection model. The advantages and disadvantages of different geometries were examined to find out which could best represent radial and gravity override flows and also fit the dimensions of the scanning field of the CT scanner. During experiments, steam was injected continuously at a constant rate into the water saturated model and CT scans were taken at six different cross sections of the model. Pressure and temperature data were collected with time at three different levels in the model. During steam injection experiments, the saturations obtained by CT matched well with the temperature data. That is, the steam override as observed by temperature data was also clearly seen on the CT pictures. During the runs where foam was present, the saturation distributions obtained from CT pictures showed a piston like displacement. However, the temperature distributions were different depending on the type of steam foam process used. The results clearly show that the pressure/temperature data alone are not sufficient to study steam foam in the presence of non-condensible gas.

  15. A Three-Dimensional Picture of the Delayed-Detonation Model of Type Ia Supernovae

    CERN Document Server

    Bravo, Eduardo

    2007-01-01

    Deflagration models poorly explain the observed diversity of SNIa. Current multidimensional simulations of SNIa predict a significant amount of, so far unobserved, carbon and oxygen moving at low velocities. It has been proposed that these drawbacks can be resolved if there is a sudden jump to a detonation (delayed detonation), but this kind of models has been explored mainly in one dimension. Here we present new three-dimensional delayed detonation models in which the deflagraton-to-detonation transition (DDT) takes place in conditions like those favored by one-dimensional models. We have used a SPH code adapted to SNIa with algorithms devised to handle subsonic as well as supersonic combustion fronts. The starting point was a C-O white dwarf of 1.38 solar masses. When the average density on the flame surface reached 2-3x10^7 g/cm^3 a detonation was launched. The detonation wave processed more than 0.3 solar masses of carbon and oxygen, emptying the central regions of the ejecta of unburned fuel and raising ...

  16. Challenging Issues on fog forecast with a three-dimensional fog forecast model

    Science.gov (United States)

    Masbou, M.

    2012-12-01

    Fog has a significant impact on economical aspect (traffic management and safety) as well as on environmental issues (fresh water source for the population and the biosphere in arid region). However, reliable fog and visibility forecasts stay challenging issue. Fog is generally a small scale phenomenon which is mostly affected by local advective transport, radiation, topography, vegetation, turbulent mixing at the surface as well as its microphysical structure. In order to consider these intertwined processes, the three-dimensional fog forecast model, COSMO-FOG, with a high vertical resolution with different microphysical complexity has been developed. This model includes a microphysical parameterisation based on the one-dimensional fog forecast model. The implementation of the cloud water droplets as a new prognostic variable allows a detailed definition of the sedimentation processes and the variations in visibility. Moreover, the turbulence scheme, based on a Mellor-Yamada 2.5 order and a closure of a 2nd order has been modified to improve the model behaviour in case of a stable atmosphere structure, occurring typically during night radiative fog episodes. The potential of COSMO-FOG will be presented in some realistic fog situations (flat, bumpy and complex terrain). The fog spatial extension will be compared with MSG satellite products for fog and low cloud. The interplays between dynamical, thermodynamical patterns and the soil-atmosphere interactions will be presented.

  17. Three-dimensional lattice Boltzmann model for immiscible two-phase flow simulations.

    Science.gov (United States)

    Liu, Haihu; Valocchi, Albert J; Kang, Qinjun

    2012-04-01

    We present an improved three-dimensional 19-velocity lattice Boltzmann model for immisicible binary fluids with variable viscosity and density ratios. This model uses a perturbation step to generate the interfacial tension and a recoloring step to promote phase segregation and maintain surfaces. A generalized perturbation operator is derived using the concept of a continuum surface force together with the constraints of mass and momentum conservation. A theoretical expression for the interfacial tension is determined directly without any additional analysis and assumptions. The recoloring algorithm proposed by Latva-Kokko and Rothman is applied for phase segregation, which minimizes the spurious velocities and removes lattice pinning. This model is first validated against the Laplace law for a stationary bubble. It is found that the interfacial tension is predicted well for density ratios up to 1000. The model is then used to simulate droplet deformation and breakup in simple shear flow. We compute droplet deformation at small capillary numbers in the Stokes regime and find excellent agreement with the theoretical Taylor relation for the segregation parameter β=0.7. In the limit of creeping flow, droplet breakup occurs at a critical capillary number 0.35Droplet breakup can also be promoted by increasing the Reynolds number. Finally, we numerically investigate a single bubble rising under buoyancy force in viscous fluids for a wide range of Eötvös and Morton numbers. Numerical results are compared with theoretical predictions and experimental results, and satisfactory agreement is shown.

  18. Engineering of microscale three-dimensional pancreatic islet models in vitro and their biomedical applications.

    Science.gov (United States)

    Gao, Bin; Wang, Lin; Han, Shuang; Pingguan-Murphy, Belinda; Zhang, Xiaohui; Xu, Feng

    2016-08-01

    Diabetes now is the most common chronic disease in the world inducing heavy burden for the people's health. Based on this, diabetes research such as islet function has become a hot topic in medical institutes of the world. Today, in medical institutes, the conventional experiment platform in vitro is monolayer cell culture. However, with the development of micro- and nano-technologies, several microengineering methods have been developed to fabricate three-dimensional (3D) islet models in vitro which can better mimic the islet of pancreases in vivo. These in vitro islet models have shown better cell function than monolayer cells, indicating their great potential as better experimental platforms to elucidate islet behaviors under both physiological and pathological conditions, such as the molecular mechanisms of diabetes and clinical islet transplantation. In this review, we present the state-of-the-art advances in the microengineering methods for fabricating microscale islet models in vitro. We hope this will help researchers to better understand the progress in the engineering 3D islet models and their biomedical applications such as drug screening and islet transplantation.

  19. A three-dimensional gravity model of the geologic structure of Long Valley caldera

    Energy Technology Data Exchange (ETDEWEB)

    Carle, S.F.; Goldstein, N.E.

    1987-03-01

    Several attempts to define and interpret this anomaly have been made in the past using 2-D and 3-D models. None of the previous interpretations have yielded definitive results, but in fairness, the interpretation here has benefited from a larger gravity data base and more subsurface control than available to previous workers. All published 3-D models simplistically assumed constant density of fill. All 2-D models suffered from the inherent three-dimensionality of the complicated density structure of Long Valley caldera. In addition, previous interpreters have lacked access to geological data, such as well lithologies and density logs, seismic refraction interpretations, suface geology, and structural geology interpretations. The purpose of this study is to use all available gravity data and geological information to constrain a multi-unit, 3-D density model based on the geology of Long Valley caldera and its vicinity. Insights on the geologic structure of the caldera fill can help other geophysical interpretations in determining near-surface effects so that deeper structure may be resolved. With adequate control on the structure of the caldera fill, we are able to examine the gravity data for the presence of deeper density anomalies in the crust. 20 refs., 7 figs.

  20. Predicting crystal growth via a unified kinetic three-dimensional partition model

    Science.gov (United States)

    Anderson, Michael W.; Gebbie-Rayet, James T.; Hill, Adam R.; Farida, Nani; Attfield, Martin P.; Cubillas, Pablo; Blatov, Vladislav A.; Proserpio, Davide M.; Akporiaye, Duncan; Arstad, Bjørnar; Gale, Julian D.

    2017-04-01

    Understanding and predicting crystal growth is fundamental to the control of functionality in modern materials. Despite investigations for more than one hundred years, it is only recently that the molecular intricacies of these processes have been revealed by scanning probe microscopy. To organize and understand this large amount of new information, new rules for crystal growth need to be developed and tested. However, because of the complexity and variety of different crystal systems, attempts to understand crystal growth in detail have so far relied on developing models that are usually applicable to only one system. Such models cannot be used to achieve the wide scope of understanding that is required to create a unified model across crystal types and crystal structures. Here we describe a general approach to understanding and, in theory, predicting the growth of a wide range of crystal types, including the incorporation of defect structures, by simultaneous molecular-scale simulation of crystal habit and surface topology using a unified kinetic three-dimensional partition model. This entails dividing the structure into ‘natural tiles’ or Voronoi polyhedra that are metastable and, consequently, temporally persistent. As such, these units are then suitable for re-construction of the crystal via a Monte Carlo algorithm. We demonstrate our approach by predicting the crystal growth of a diverse set of crystal types, including zeolites, metal-organic frameworks, calcite, urea and L-cystine.

  1. Leading-order cross term correction of three-dimensional parabolic equation models.

    Science.gov (United States)

    Sturm, Frédéric

    2016-01-01

    The issue of handling a leading-order cross-multiplied term in three-dimensional (3D) parabolic equation (PE) based models is addressed. In particular, numerical results obtained incorporating a leading-order cross-term correction in an existing 3D PE model, written in cylindrical coordinates, based on higher-order Padé approximations in both depth and azimuth, and a splitting operator technique are reported. Note that the numerical algorithm proposed in this paper could be used in the future to update any 3D PE codes that neglect cross terms and use a splitting numerical technique. The 3D penetrable wedge benchmark problem is chosen to illustrate the accuracy of the now-fully wide-angle enhanced 3D PE model. The comparisons with a 3D reference solution based on the image source clearly show that handling the leading-order cross term in the 3D PE computation is sufficient to remove the phase errors inherent to any 3D PE models that neglect cross terms in their formulations.

  2. Generation, validation, and utilization of a three-dimensional pharmacophore model for EP3 antagonists.

    Science.gov (United States)

    Mishra, Rama K; Singh, Jasbir

    2010-08-23

    Studies reported here are aimed to investigate the important structural features that characterize the human EP(3) antagonists. Based on the knowledge of low-energy conformation of the endogenous ligand, the initial hit analogs were prepared. Subsequently, a ligand-based lead optimization approach using pharmacophore model generation was utilized. A 5-point pharmacophore using a training set of 19 compounds spanning the IC(50) data over 4-log order was constructed using the HypoGen module of Catalyst. Following pharmacophore customization, using a linear structure-activity regression equation, a six feature three-dimensional predictive pharmacophore model, P6, was built, which resulted in improved predictive power. The P6 model was validated using a test set of 11 compounds providing a correlation coefficient (R(2)) of 0.90 for predictive versus experimental EP(3) IC(50) values. This pharmacophore model has been expanded to include diverse chemotypes, and the predictive ability of the customized pharmacophore has been tested.

  3. Atomic quantum simulation of a three-dimensional U(1) gauge-Higgs model

    Science.gov (United States)

    Kuno, Yoshihito; Sakane, Shinya; Kasamatsu, Kenichi; Ichinose, Ikuo; Matsui, Tetsuo

    2016-12-01

    In this paper, we study theoretically atomic quantum simulations of a U(1) gauge-Higgs model on a three-dimensional (3D) spatial lattice by using an extended Bose-Hubbard model with intersite repulsions on a 3D optical lattice. Here, the phase and density fluctuations of the boson variable on each site of the optical lattice describe the vector potential and the electric field on each link of the gauge-model lattice, respectively. The target gauge model is different from the standard Wilson-type U(1) gauge-Higgs model because it has plaquette and Higgs interactions with asymmetric couplings in the space-time directions. Nevertheless, the corresponding quantum simulation is still important as it provides us with a platform to study unexplored time-dependent phenomena characteristic of each phase in the general gauge-Higgs models. To determine the phase diagram of the gauge-Higgs model at zero temperature, we perform Monte Carlo simulations of the corresponding 3+1-dimensional U(1) gauge-Higgs model, and obtain the confinement and Higgs phases. To investigate the dynamical properties of the gauge-Higgs model, we apply the Gross-Pitaevskii equations to the extended Bose-Hubbard model. We simulate the time evolution of an electric flux that initially is put on a straight line connecting two external point charges. We also calculate the potential energy between this pair of charges and obtain the string tension in the confinement phase. Finally, we propose a feasible experimental setup for the atomic simulations of this quantum gauge-Higgs model on the 3D optical lattice. These results may serve as theoretical guides for future experiments.

  4. A simple three-dimensional macroscopic root water uptake model based on the hydraulic architecture approach

    Directory of Open Access Journals (Sweden)

    V. Couvreur

    2012-08-01

    Full Text Available Many hydrological models including root water uptake (RWU do not consider the dimension of root system hydraulic architecture (HA because explicitly solving water flow in such a complex system is too time consuming. However, they might lack process understanding when basing RWU and plant water stress predictions on functions of variables such as the root length density distribution. On the basis of analytical solutions of water flow in a simple HA, we developed an "implicit" model of the root system HA for simulation of RWU distribution (sink term of Richards' equation and plant water stress in three-dimensional soil water flow models. The new model has three macroscopic parameters defined at the soil element scale, or at the plant scale, rather than for each segment of the root system architecture: the standard sink fraction distribution SSF, the root system equivalent conductance Krs and the compensatory RWU conductance Kcomp. It clearly decouples the process of water stress from compensatory RWU, and its structure is appropriate for hydraulic lift simulation. As compared to a model explicitly solving water flow in a realistic maize root system HA, the implicit model showed to be accurate for predicting RWU distribution and plant collar water potential, with one single set of parameters, in dissimilar water dynamics scenarios. For these scenarios, the computing time of the implicit model was a factor 28 to 214 shorter than that of the explicit one. We also provide a new expression for the effective soil water potential sensed by plants in soils with a heterogeneous water potential distribution, which emerged from the implicit model equations. With the proposed implicit model of the root system HA, new concepts are brought which open avenues towards simple and mechanistic RWU models and water stress functions operational for field scale water dynamics simulation.

  5. A simple three-dimensional macroscopic root water uptake model based on the hydraulic architecture approach

    Directory of Open Access Journals (Sweden)

    V. Couvreur

    2012-04-01

    Full Text Available Many hydrological models including root water uptake (RWU do not consider the dimension of root system hydraulic architecture (HA because explicitly solving water flow in such a complex system is too much time consuming. However, they might lack process understanding when basing RWU and plant water stress predictions on functions of variables such as the root length density distribution. On the basis of analytical solutions of water flow in a simple HA, we developed an "implicit" model of the root system HA for simulation of RWU distribution (sink term of Richards' equation and plant water stress in three-dimensional soil water flow models. The new model has three macroscopic parameters defined at the soil element scale or at the plant scale rather than for each segment of the root architecture: the standard sink distribution SSD, the root system equivalent conductance Krs and the compensatory conductance Kcomp. It clearly decouples the process of water stress from compensatory RWU and its structure is appropriate for hydraulic lift simulation. As compared to a model explicitly solving water flow in a realistic maize root system HA, the implicit model showed to be accurate for predicting RWU distribution and plant collar water potential, with one single set of parameters, in contrasted water dynamics scenarios. For these scenarios, the computing time of the implicit model was a factor 28 to 214 shorter than that of the explicit one. We also provide a new expression for the effective soil water potential sensed by plants in soils with a heterogeneous water potential distribution, which emerged from the implicit model equations. With the proposed implicit model of the root system HA, new concepts are brought which open avenues towards simple and process understanding RWU models and water stress functions operational for field scale water dynamics simulation.

  6. Research on Three-dimensional Modeling and Visualization for Well Trajectory of Drilling

    Directory of Open Access Journals (Sweden)

    Gao Xiaorong

    2013-09-01

    Full Text Available This study aims to realize 3D visualization of well trajectory more efficiently by use of a new method. In view of the shortcomings of traditional three-dimensional (3D modeling methods for well trajectory, a new method of slice-based 3D modeling for the tubular well trajectory was put forward, by which a 3D well trajectory model was established. The method can realize the 3D tubular well trajectory seamless connection efficiently and conveniently without interpolation smoothing treatment of the well trajectory’s crook. In order to provide a convenience to observe and analyze intuitively as well as control the well trajectory effectively in drilling for the drilling staff, realized 3D visualization of the well trajectory based on virtual reality technology and provided flexible human-computer interaction functions with which the drilling staff can make interactive operation such as zooming, translating and rotating, etc., for the 3D well trajectory. Consequently, the well trajectory can be observed from multi-azimuth and multi-angle, improving the oil reservoir encountering rate. Finally, an application example of 3D visualization for well trajectory in Dagang Oilfield was given.

  7. Perceptual disturbances predicted in zero-g through three-dimensional modeling.

    Science.gov (United States)

    Holly, Jan E

    2003-01-01

    Perceptual disturbances in zero-g and 1-g differ. For example, the vestibular coriolis (or "cross-coupled") effect is weaker in zero-g. In 1-g, blindfolded subjects rotating on-axis experience perceptual disturbances upon head tilt, but the effects diminish in zero-g. Head tilts during centrifugation in zero-g and 1-g are investigated here by means of three-dimensional modeling, using a model that was previously used to explain the zero-g reduction of the on-axis vestibular coriolis effect. The model's foundation comprises the laws of physics, including linear-angular interactions in three dimensions. Addressed is the question: In zero-g, will the vestibular coriolis effect be as weak during centrifugation as during on-axis rotation? Centrifugation in 1-g was simulated first, with the subject supine, head toward center. The most noticeable result concerned direction of head yaw. For clockwise centrifuge rotation, greater perceptual effects arose in simulations during yaw counterclockwise (as viewed from the top of the head) than for yaw clockwise. Centrifugation in zero-g was then simulated with the same "supine" orientation. The result: In zero-g the simulated vestibular coriolis effect was greater during centrifugation than during on-axis rotation. In addition, clockwise-counterclockwise differences did not appear in zero-g, in contrast to the differences that appear in 1-g.

  8. Improved water resource management for a highly complex environment using three-dimensional groundwater modelling

    Science.gov (United States)

    Moeck, Christian; Affolter, Annette; Radny, Dirk; Dressmann, Horst; Auckenthaler, Adrian; Huggenberger, Peter; Schirmer, Mario

    2017-08-01

    A three-dimensional groundwater model was used to improve water resource management for a study area in north-west Switzerland, where drinking-water production is close to former landfills and industrial areas. To avoid drinking-water contamination, artificial groundwater recharge with surface water is used to create a hydraulic barrier between the contaminated sites and drinking-water extraction wells. The model was used for simulating existing and proposed water management strategies as a tool to ensure the utmost security for drinking water. A systematic evaluation of the flow direction between existing observation points using a developed three-point estimation method for a large number of scenarios was carried out. It is demonstrated that systematically applying the developed methodology helps to identify vulnerable locations which are sensitive to changing boundary conditions such as those arising from changes to artificial groundwater recharge rates. At these locations, additional investigations and protection are required. The presented integrated approach, using the groundwater flow direction between observation points, can be easily transferred to a variety of hydrological settings to systematically evaluate groundwater modelling scenarios.

  9. Geostatistical Procedures for Developing Three-Dimensional Aquifer Models from Drillers' Logs

    Science.gov (United States)

    Bohling, G.; Helm, C.

    2013-12-01

    The Hydrostratigraphic Drilling Record Assessment (HyDRA) project is developing procedures for employing the vast but highly qualitative hydrostratigraphic information contained in drillers' logs in the development of quantitative three-dimensional (3D) depictions of subsurface properties for use in flow and transport models to support groundwater management practices. One of the project's objectives is to develop protocols for 3D interpolation of lithological data from drillers' logs, properly accounting for the categorical nature of these data. This poster describes the geostatistical procedures developed to accomplish this objective. Using a translation table currently containing over 62,000 unique sediment descriptions encountered during the transcription of over 15,000 logs in the Kansas High Plains aquifer, the sediment descriptions are translated into 71 standardized terms, which are then mapped into a small number of categories associated with different representative property (e.g., hydraulic conductivity [K]) values. Each log is partitioned into regular intervals and the proportion of each K category within each interval is computed. To properly account for their compositional nature, a logratio transform is applied to the proportions. The transformed values are then kriged to the 3D model grid and backtransformed to determine the proportion of each category within each model cell. Various summary measures can then be computed from the proportions, including a proportion-weighted average K and an entropy measure representing the degree of mixing of categories within each cell. We also describe a related cross-validation procedure for assessing log quality.

  10. Three-Dimensional Modeling of the Solar Wind: From the Coronal Base to the Outer Heliosphere

    Science.gov (United States)

    Usmanov, A. V; Goldstein, M. L.; Matthaeus, W. H.

    2011-01-01

    We have developed a global fully three-dimensional magnetohydrodynamic solar wind model for the region that extends from the coronal base to 100 AU. The simulation domain consists of tree spherical shell subdomains with computational boundaries between them placed at 20 solar radii and 0.3 AU. The location of the first boundary ensures that the flow at the boundary is both supersonic and super-Alfvenic. A steady-state solution in the innermost (coronal) region is obtained by the time-relaxation method. The solution uses a tilted dipole model or solar magnetograms as the boundary condition at the coronal base and includes a flux of Alfven waves in the WKB approximation which provide additional acceleration for the coronal outflow in the open field regions. The intermediate region solution is constructed by the integration of steady-state equations along radius using a marching scheme. The outer region solution (0.3-100 AU) is obtained again by the time relaxation and takes into account turbulence transport and heating as well as heating, flow deceleration, and other effects due to the interstellar pickup protons treated as a separate fluid. We use the model to simulate the global steady-state structure of the solar wind from the coronal base to the heliospheric boundary and compare the results with Ulysses and Voyager observations.

  11. In vitro three-dimensional cancer metastasis modeling: Past, present, and future

    Science.gov (United States)

    Wei-jing, Han; Wei, Yuan; Jiang-rui, Zhu; Qihui, Fan; Junle, Qu; Li-yu, Liu

    2016-01-01

    Metastasis is the leading cause of most cancer deaths, as opposed to dysregulated cell growth of the primary tumor. Molecular mechanisms of metastasis have been studied for decades and the findings have evolved our understanding of the progression of malignancy. However, most of the molecular mechanisms fail to address the causes of cancer and its evolutionary origin, demonstrating an inability to find a solution for complete cure of cancer. After being a neglected area of tumor biology for quite some time, recently several studies have focused on the impact of the tumor microenvironment on cancer growth. The importance of the tumor microenvironment is gradually gaining attention, particularly from the perspective of biophysics. In vitro three-dimensional (3-D) metastatic models are an indispensable platform for investigating the tumor microenvironment, as they mimic the in vivo tumor tissue. In 3-D metastatic in vitro models, static factors such as the mechanical properties, biochemical factors, as well as dynamic factors such as cell-cell, cell-ECM interactions, and fluid shear stress can be studied quantitatively. With increasing focus on basic cancer research and drug development, the in vitro 3-D models offer unique advantages in fundamental and clinical biomedical studies. Project supported by the National Basic Research Program of China (Grant No. 2013CB837200), the National Natural Science Foundation of China (Grant No. 11474345), and the Beijing Natural Science Foundation, China (Grant No. 7154221).

  12. Three-dimensional oil dispersion model in the Campos Basin, Brazil.

    Science.gov (United States)

    Oliveira, Bernardo Lopes Almeida de; Netto, Theodoro Antoun; Assad, Luiz Paulo de Freitas

    2017-03-09

    This paper presents the physical and mathematical formulation of a three-dimensional oil dispersion model that calculates the trajectory from the seafloor to the sea surface, its assumptions and constraints. It was developed by researchers who are familiar with oil spill dispersion and mathematical analysis. Oil dispersion is calculated through two computational routines. The first calculates the vertical dispersion along the water column and resamples the droplets when the oil reaches the surface. The second calculates the surface displacement of the spill. This model is based on the Eulerian approach, and it uses numerical solution schemes in time and in space to solve the equation for advective-diffusive transport. A case study based on an actual accident that happened in the Campos Basin, in Rio de Janeiro state, considering the instant spill of 1000 m(3) was used to evaluate the proposed model. After calculating the vertical transport, it was estimated that the area covered by the oil spill on the surface was about 35,685 m². After calculating the dispersion at the surface, the plume area was estimated as 20% of the initial area, resulting in a final area of 28,548 m².

  13. A three-dimensional PEM fuel cell model with consistent treatment of water transport in MEA

    Science.gov (United States)

    Meng, Hua

    In this paper, a three-dimensional PEM fuel cell model with a consistent water transport treatment in the membrane electrode assembly (MEA) has been developed. In this new PEM fuel cell model, the conservation equation of the water concentration is solved in the gas channels, gas diffusion layers, and catalyst layers while a conservation equation of the water content is established in the membrane. These two equations are connected using a set of internal boundary conditions based on the thermodynamic phase equilibrium and flux equality at the interface of the membrane and the catalyst layer. The existing fictitious water concentration treatment, which assumes thermodynamic phase equilibrium between the water content in the membrane phase and the water concentration, is applied in the two catalyst layers to consider water transport in the membrane phase. Since all the other conservation equations are still developed and solved in the single-domain framework without resort to interfacial boundary conditions, the present new PEM fuel cell model is termed as a mixed-domain method. Results from this mixed-domain approach have been compared extensively with those from the single-domain method, showing good accuracy in terms of not only cell performances and current distributions but also water content variations in the membrane.

  14. Transient three-dimensional thermal model for batteries with thin electrodes

    Science.gov (United States)

    Taheri, Peyman; Yazdanpour, Maryam; Bahrami, Majid

    2013-12-01

    A three-dimensional analytical model is proposed to investigate the thermal response of batteries, with a plurality of thin electrodes, to heat generation during their operation. The model is based on integral-transform technique that gives a closed-form solution for the fundamental problem of unsteady heat conduction in batteries with orthotropic thermal conductivities, where the heat generation is a function of both temperature and depth-of-discharge. The full-field solutions take the form of a rapidly converging triple infinite sum whose leading terms provide a very simple yet accurate approximation of the battery thermal behavior with modest numerical effort. The accuracy of the proposed model is tested through comparison with numerical simulations. The method is used to describe spatial and temporal temperature evolution in a sample pouch type lithium-ion polymer battery during galvanostatic discharge processes while subjected to convective-radiative cooling at its surfaces (the most practical case is considered, when surrounding medium is at a constant ambient temperature). In the simulations, emphasis is placed on the maintenance of the battery operational temperature below a critical temperature. Through definition of a surface-averaged Biot number, certain conditions are highlighted, under which a two-dimensional thermal analysis is applicable.

  15. Three-dimensional modeling of diesel engine intake flow, combustion and emissions

    Science.gov (United States)

    Reitz, R. D.; Rutland, C. J.

    1992-01-01

    A three-dimensional computer code (KIVA) is being modified to include state-of-the-art submodels for diesel engine flow and combustion: spray atomization, drop breakup/coalescence, multi-component fuel vaporization, spray/wall interaction, ignition and combustion, wall heat transfer, unburned HC and NOx formation, soot and radiation, and the intake flow process. Improved and/or new submodels which were completed are: wall heat transfer with unsteadiness and compressibility, laminar-turbulent characteristic time combustion with unburned HC and Zeldo'vich NOx, and spray/wall impingement with rebounding and sliding drops. Results to date show that adding the effects of unsteadiness and compressibility improves the accuracy of heat transfer predictions; spray drop rebound can occur from walls at low impingement velocities (e.g., in cold-starting); larger spray drops are formed at the nozzle due to the influence of vaporization on the atomization process; a laminar-and-turbulent characteristic time combustion model has the flexibility to match measured engine combustion data over a wide range of operating conditions; and finally, the characteristic time combustion model can also be extended to allow predictions of ignition. The accuracy of the predictions is being assessed by comparisons with available measurements. Additional supporting experiments are also described briefly. To date, comparisons with measured engine cylinder pressure and heat flux data were made for homogeneous charge, spark-ignited and compression-ignited engines. The model results are in good agreement with the experiments.

  16. Monitoring Prostate Tumor Growth in an Orthotopic Mouse Model Using Three-Dimensional Ultrasound Imaging Technique.

    Science.gov (United States)

    Ni, Jie; Cozzi, Paul; Hung, Tzong-Tyng; Hao, Jingli; Graham, Peter; Li, Yong

    2016-02-01

    Prostate cancer (CaP) is the most commonly diagnosed and the second leading cause of death from cancer in males in USA. Prostate orthotopic mouse model has been widely used to study human CaP in preclinical settings. Measurement of changes in tumor size obtained from noninvasive diagnostic images is a standard method for monitoring responses to anticancer modalities. This article reports for the first time the usage of a three-dimensional (3D) ultrasound system equipped with photoacoustic (PA) imaging in monitoring longitudinal prostate tumor growth in a PC-3 orthotopic NODSCID mouse model (n = 8). Two-dimensional and 3D modes of ultrasound show great ability in accurately depicting the size and shape of prostate tumors. PA function on two-dimensional and 3D images showed average oxygen saturation and average hemoglobin concentration of the tumor. Results showed a good fit in representative exponential tumor growth curves (n = 3; r(2) = 0.948, 0.955, and 0.953, respectively) and a good correlation of tumor volume measurements performed in vivo with autopsy (n = 8, r = 0.95, P model, with advantages such as high contrast, uncomplicated protocols, economical equipment, and nonharmfulness to animals. PA mode also enabled display of blood oxygenation surrounding the tumor and tumor vasculature and angiogenesis, making 3D ultrasound imaging an ideal tool for preclinical cancer research.

  17. Vertex shading of the three-dimensional model based on ray-tracing algorithm

    Science.gov (United States)

    Hu, Xiaoming; Sang, Xinzhu; Xing, Shujun; Yan, Binbin; Wang, Kuiru; Dou, Wenhua; Xiao, Liquan

    2016-10-01

    Ray Tracing Algorithm is one of the research hotspots in Photorealistic Graphics. It is an important light and shadow technology in many industries with the three-dimensional (3D) structure, such as aerospace, game, video and so on. Unlike the traditional method of pixel shading based on ray tracing, a novel ray tracing algorithm is presented to color and render vertices of the 3D model directly. Rendering results are related to the degree of subdivision of the 3D model. A good light and shade effect is achieved by realizing the quad-tree data structure to get adaptive subdivision of a triangle according to the brightness difference of its vertices. The uniform grid algorithm is adopted to improve the rendering efficiency. Besides, the rendering time is independent of the screen resolution. In theory, as long as the subdivision of a model is adequate, cool effects as the same as the way of pixel shading will be obtained. Our practical application can be compromised between the efficiency and the effectiveness.

  18. Three-dimensional Modelling Of Nitrate Tranfer In A Flooded Alluvial Zone

    Science.gov (United States)

    Trémolières, M.; Lachenal, C.; Sánchez-Pérez, J. M.

    In the groundwater of a flooded alluvial forest in Alsace (Illwald forest, Eastern France), upstream of the forest nitrate concentrations (close to 40 mg/l) are largely higher than those downstream (lower than 5 mg/l). The objective of this study is to evaluate the effect of two factors which could be responsible for nitrogen elim- ination : drainage by streams and river (very significant in the area) and reduction by the groundwater U plant complex (bacterial denitrification and root uptake). A three-dimensional hydrodynamic model was used to estimate horizontal and vertical flows of water in the aquifer. The conception of this model required data of hydraulic conductivity, surface water - groundwater exchanges and nitrate concentrations. The model was validated with the three following variables, which were measured locally : piezometric level, volume exported by streams and chloride concentrations in ground- water (used as an hydrological tracer). The main results showed that the drainage by streams contributed to the elimination of polluted groundwater to a depth of at least 40 m. The balance input-output of the system was calculated acroos the whole surface (2100ha) over a period of three years. The total purifying capacity of this wetland was close to 240 kgN/ha/year and only 40kg/ha/year were eliminated by stream drainage, the greater part of the rest was eliminated by denitrification and/or root uptake.

  19. Pakal: A Three-dimensional Model to Solve the Radiative Transfer Equation

    CERN Document Server

    De la Luz, Victor; Mendoza-Torres, J E; Selhorst, Caius L; 10.1088/0067-0049/188/2/437

    2011-01-01

    We present a new numerical model called "Pakal" intended to solve the radiative transfer equation in a three-dimensional (3D) geometry, using the approximation for a locally plane-parallel atmosphere. Pakal uses pre-calculated radial profiles of density and temperature (based on hydrostatic, hydrodynamic, or MHD models) to compute the emission from 3D source structures with high spatial resolution. Then, Pakal solves the radiative transfer equation in a set of (3D) ray paths, going from the source to the observer. Pakal uses a new algorithm to compute the radiative transfer equation by using an intelligent system consisting of three structures: a cellular automaton; an expert system; and a program coordinator. The code outputs can be either two-dimensional maps or one-dimensional profiles, which reproduce the observations with high accuracy, giving detailed physical information about the environment where the radiation was generated and/or transmitted. We present the model applied to a 3D solar radial geometr...

  20. Three-dimensional random resistor-network model for solid oxide fuel cell composite electrodes

    Energy Technology Data Exchange (ETDEWEB)

    Abbaspour, Ali [Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2G6 (Canada); Luo Jingli, E-mail: jingli.luo@ualberta.c [Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2G6 (Canada); Nandakumar, K. [Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA (United States)

    2010-04-30

    A three-dimensional reconstruction of solid oxide fuel cell (SOFC) composite electrodes was developed to evaluate the performance and further investigate the effect of microstructure on the performance of SOFC electrodes. Porosity of the electrode is controlled by adding pore former particles (spheres) to the electrode and ignoring them in analysis step. To enhance connectivity between particles and increase the length of triple-phase boundary (TPB), sintering process is mimicked by enlarging particles to certain degree after settling them inside the packing. Geometrical characteristics such as length of TBP and active contact area as well as porosity can easily be calculated using the current model. Electrochemical process is simulated using resistor-network model and complete Butler-Volmer equation is used to deal with charge transfer process on TBP. The model shows that TPBs are not uniformly distributed across the electrode and location of TPBs as well as amount of electrochemical reaction is not uniform. Effects of electrode thickness, particle size ratio, electron and ion conductor conductivities and rate of electrochemical reaction on overall electrochemical performance of electrode are investigated.

  1. Gamma-ray diagnostics of Type Ia supernovae: Predictions of observables from three-dimensional modeling

    CERN Document Server

    Summa, A; Kromer, M; Boyer, S; Roepke, F K; Sim, S A; Seitenzahl, I R; Fink, M; Mannheim, K; Pakmor, R; Ciaraldi-Schoolmann, F; Diehl, R; Maeda, K; Hillebrandt, W

    2013-01-01

    Besides the fact that the gamma-ray emission due to radioactive decays is responsible for powering the light curves of Type Ia supernovae (SNe Ia), gamma rays themselves are of particular interest as a diagnostic tool because they provide a direct way to obtain deeper insights into the nucleosynthesis and the kinematics of these explosion events. Focusing on two of the most broadly discussed SN Ia progenitor scenarios - a delayed detonation in a Chandrasekhar-mass white dwarf (WD) and a violent merger of two WDs - we use three-dimensional explosion models and perform radiative transfer simulations to obtain synthetic gamma-ray spectra. Both chosen models produce the same mass of 56Ni and have similar optical properties that are in reasonable agreement with the recently observed supernova SN 2011fe. In contrast to the optical regime, the gamma-ray emission of our two chosen models proves to be rather different. The almost direct connection of the emission of gamma rays to fundamental physical processes occurin...

  2. A phasor approach analysis of multiphoton FLIM measurements of three-dimensional cell culture models

    Science.gov (United States)

    Lakner, P. H.; Möller, Y.; Olayioye, M. A.; Brucker, S. Y.; Schenke-Layland, K.; Monaghan, M. G.

    2016-03-01

    Fluorescence lifetime imaging microscopy (FLIM) is a useful approach to obtain information regarding the endogenous fluorophores present in biological samples. The concise evaluation of FLIM data requires the use of robust mathematical algorithms. In this study, we developed a user-friendly phasor approach for analyzing FLIM data and applied this method on three-dimensional (3D) Caco-2 models of polarized epithelial luminal cysts in a supporting extracellular matrix environment. These Caco-2 based models were treated with epidermal growth factor (EGF), to stimulate proliferation in order to determine if FLIM could detect such a change in cell behavior. Autofluorescence from nicotinamide adenine dinucleotide (phosphate) (NAD(P)H) in luminal Caco-2 cysts was stimulated by 2-photon laser excitation. Using a phasor approach, the lifetimes of involved fluorophores and their contribution were calculated with fewer initial assumptions when compared to multiexponential decay fitting. The phasor approach simplified FLIM data analysis, making it an interesting tool for non-experts in numerical data analysis. We observed that an increased proliferation stimulated by EGF led to a significant shift in fluorescence lifetime and a significant alteration of the phasor data shape. Our data demonstrates that multiphoton FLIM analysis with the phasor approach is a suitable method for the non-invasive analysis of 3D in vitro cell culture models qualifying this method for monitoring basic cellular features and the effect of external factors.

  3. Beam model and three dimensional numerical simulations on suspended microchannel resonators

    Directory of Open Access Journals (Sweden)

    Kuan-Rong Huang

    2012-12-01

    Full Text Available At the microscale level, the vibrational characteristics of microstructures have been widely applied on biochemical microchips, especially for bio-molecules detection. The vibrational mechanics and mechanism of microcantilever beams immersed in the fluids for detecting target bio-molecules carried in the fluids have been widely studied and realized in recent years. However, it is not the case for microcantilever beams containing fluids inside (called suspended microchannel resonators, SMR. In this paper, an 1-D beam model for SMR is proposed and the formula for prediction of resonant frequency and resonant frequency shift are derived. For verification of validity of the 1-D beam model, three dimensional finite element simulations using ANSYS are performed. The effects of relevant parameters, such as density and viscosity of the fluids, on the frequency response are investigated. A link between numerical simulations and mathematical modeling is established through an equivalence relation. Subsequently, a useful formula of the resonant frequency shift as a function of the mass variation and the viscosity of the contained fluid is derived. Good agreement between the numerical simulations and the experimental data is obtained and the physical mechanism is elucidated.

  4. Three-dimensional (3D) printed endovascular simulation models: a feasibility study

    Science.gov (United States)

    Nesbitt, Craig; McCaslin, James; Bagnall, Alan; Davey, Philip; Bose, Pentop; Williams, Rob

    2017-01-01

    Background Three-dimensional (3D) printing is a manufacturing process in which an object is created by specialist printers designed to print in additive layers to create a 3D object. Whilst there are initial promising medical applications of 3D printing, a lack of evidence to support its use remains a barrier for larger scale adoption into clinical practice. Endovascular virtual reality (VR) simulation plays an important role in the safe training of future endovascular practitioners, but existing VR models have disadvantages including cost and accessibility which could be addressed with 3D printing. Methods This study sought to evaluate the feasibility of 3D printing an anatomically accurate human aorta for the purposes of endovascular training. Results A 3D printed model was successfully designed and printed and used for endovascular simulation. The stages of development and practical applications are described. Feedback from 96 physicians who answered a series of questions using a 5 point Likert scale is presented. Conclusions Initial data supports the value of 3D printed endovascular models although further educational validation is required. PMID:28251121

  5. Three-dimensional model on thermal response of skin subject to laser heating.

    Science.gov (United States)

    Shen, Wensheng; Zhang, Jun; Yang, Fuqian

    2005-04-01

    A three-dimensional (3D) multilayer model based on the skin physical structure is developed to investigate the transient thermal response of human skin subject to laser heating. The temperature distribution of the skin is modeled by the bioheat transfer equation, and the influence of laser heating is expressed as a source term where the strength of the source is a product of a Gaussian shaped incident irradiance, an exponentially shaped axial attenuation, and a time function. The water evaporation and diffusion is included in the model by adding two terms regarding the heat loss due to the evaporation and diffusion, where the rate of water evaporation is determined based on the theory of laminar boundary layer. Cryogen spray cooling (CSC) in laser therapy is studied, as well as its effect on the skin thermal response. The time-dependent equation is discretized using the finite difference method with the Crank-Nicholson scheme and the stability of the numerical method is analyzed. The large sparse linear system resulted from discretizing the governing partial differential equation is solved by a GMRES solver and the expected simulation results are obtained.

  6. Development of a Three-Dimensional Finite Element Chest Model for the 5(th) Percentile Female.

    Science.gov (United States)

    Kimpara, Hideyuki; Lee, Jong B; Yang, King H; King, Albert I; Iwamoto, Masami; Watanabe, Isao; Miki, Kazuo

    2005-11-01

    Several three-dimensional (3D) finite element (FE) models of the human body have been developed to elucidate injury mechanisms due to automotive crashes. However, these models are mainly focused on 50(th) percentile male. As a first step towards a better understanding of injury biomechanics in the small female, a 3D FE model of a 5(th) percentile female human chest (FEM-5F) has been developed and validated against experimental data obtained from two sets of frontal impact, one set of lateral impact, two sets of oblique impact and a series of ballistic impacts. Two previous FE models, a small female Total HUman Model for Safety (THUMS-AF05) occupant version 1.0Beta (Kimpara et al. 2002) and the Wayne State University Human Thoracic Model (WSUHTM, Wang 1995 and Shah et al. 2001) were integrated and modified for this model development. The model incorporated not only geometrical gender differences, such as location of the internal organs and structure of the bony skeleton, but also the biomechanical differences of the ribs due to gender. It includes a detailed description of the sternum, ribs, costal cartilage, thoracic spine, skin, superficial muscles, intercostal muscles, heart, lung, diaphragm, major blood vessels and simplified abdominal internal organs and has been validated against a series of six cadaveric experiments on the small female reported by Nahum et al. (1970), Kroell et al. (1974), Viano (1989), Talantikite et al. (1998) and Wilhelm (2003). Results predicted by the model were well-matched to these experimental data for a range of impact speeds and impactor masses. More research is needed in order to increase the accuracy of predicting rib fractures so that the mechanisms responsible for small female injury can be more clearly defined.

  7. An Inverse Model of Three-Dimensional Flow and Transport in Heterogeneous Porous Media

    Science.gov (United States)

    Robinson, B. A.; Vrugt, J. A.; Yoon, H.; Zhang, C.; Werth, C. J.; Kitanidis, P. K.; Lichtner, P. C.; Lu, C.

    2007-12-01

    A three-dimensional flow and transport model was developed to simulate the results of a laboratory-scale experiment in which snapshots of concentration were obtained using magnetic resonance imaging (MRI) during the displacement of tracer through a 14 by 8 by 8 cm flow cell. The medium was deliberately constructed to be heterogeneous with a known spatial correlation structure using sand of five different grain-size distributions. The extremely well characterized flow cell and large, high-precision data set of concentrations during displacement make this a unique experiment for examining the validity of flow and transport models, and for exploring new methods for interpreting large data sets using advanced optimization algorithms. A transport model was constructed by solving the steady state flow equations using the Finite Element Heat and Mass (FEHM) code, using FEHM's particle tracking transport model for simulating tracer migration. The particle tracking model was selected so that precise estimates of the transport parameters could be obtained that are not corrupted by numerical dispersion; a large number of particles (typically one million) were required to provide accuracy. The inverse model included nine uncertain parameters, the five permeability values of the individual sand units, and four dispersion/diffusion parameters. The inverse problem was solved with AMALGAM and DREAM, two recently developed self-adaptive multimethod optimization algorithms. The computations were enabled by performing both the transport model and the optimization loop on a high-performance computing cluster. Computational results indicate that parameter estimates and increased understanding of the behavior of the system can be obtained, and significant improvements in the fit to the data over hand calibration can be achieved, using this inverse modeling approach. The study also illustrates that numerical methods that make effective use of high- performance computing resources and

  8. [Construction and application of economy-pollution-environment three-dimensional evaluation model for district].

    Science.gov (United States)

    Fan, Xin-Gang; Mi, Wen-Bao; Ma, Zhen-Ning

    2015-02-01

    For deep analysis on the regional environmental economic system, the paper analyzes the mutual relation of regional economy development, environmental quality, environmental pollution, and builds the theoretical basis. Then, the economy-pollution-environment quality three-dimensional coupling evaluation model for district is constructed. It includes economic development level index, environmental pollution index, and environmental quality index. The model is a cube, which has spatialization and visualization characteristics. The model includes 8 sub cubes, which expresses 8 types of state, e. g. low pollution-inferior quality-low level of economic development etc. The model can be used to evaluate the status of region, divide development phase, analyze evolution trend etc. It has two ways including relative meaning evaluation (RME) and absolute meaning evaluation (AME). Based on the model, Yinchuan City in the Ningxia Hui Autonomous Region is used as an example for the empirical study. Using RME, compared with Guangzhou city, The result shows that the Yinchuan City has been a high pollution-low quality-low level of economic development state for a long period during 1996-2010. After 2007, the state changed to a high pollution-high quality-low level of economic development. Now, the environmental quality of Yinchuan city gets better, but pollutant discharge pressure is high, and tends to be the break point of high environment quality and low environment. With AME, using national standard, the Yinchuan City remains a high pollution-low quality-low level of economic development state during 1996-2010. Empirical research verifies that different target reference areas and relevant national standards have different main parameters, the evaluating result has an flexible range. The dimensionless data enhances the coupling of index. The data position in model increases the visibility to the environmental management decisions. The model improves mismatches of calculated data

  9. Comparison of two-and three-dimensional modeling of invert trap for sewer solid management

    Institute of Scientific and Technical Information of China (English)

    Tsewang Thinglas; Deo Raj Kaushal

    2008-01-01

    In the present study, five different invert trap configurations (rectangular with and without lids on both sides; trapezoidal, trapezoidal with rectangular base and rectangular with trapezoidal base with lids on both sides) were simulated for both two-dimensional (2D) and three-dimensional (3D) flow conditions for three sediment types (sand, styrocell and plastic beads) at six flow rates (0.35, 0.70, 1.05, 1.35, 4.55 and 9.95L/s) for each trap. Computational fluid dynamics (CFD)-based modeling using FLUENT software with Renormalization Group (RNG) k-ε model along with discrete phase model (DPM) were used in the simulations. A hexagonal/tetrahedral and map-type non-uniform grid was chosen to discretize the entire computational domain and a control volume finite difference method was used to solve the governing equations. The flow rates selected in the present study cover the entire range of flow rate expected for dry weather and monsoon. The simulation is capable of differentiating between 2D and 3D modeling of particle trajectories, the effects of flow rate and trap geometry on flow patterns developed in the trap. The sediment retention ratio for 2D is higher than that for 3D modeling for all flow conditions, particle types and model geometry due to inclusion of lateral effects in 3D modeling. The invert trap having rectangular shape with trapezoidal base is found to be the most efficient configuration in both 2D and 3D modeling.

  10. Three-dimensional modeling of Mount Vesuvius with sequential integrated inversion

    Science.gov (United States)

    Tondi, Rosaria; de Franco, Roberto

    2003-05-01

    A new image of Mount Vesuvius and the surrounding area is recovered from the tomographic inversion of 693 first P wave arrivals recorded by 314 receivers deployed along five profiles which intersect the crater, and gravity data collected in 17,598 stations on land and offshore. The final three-dimensional (3-D) velocity model presented here is determined by interpolation of five 2-D velocity sections obtained from sequential integrated inversion (SII) of seismic and gravity data. The inversion procedure adopts the "maximum likelihood" scheme in order to jointly optimize seismic velocities and densities. In this way we recover velocity and density models both consistent with seismic and gravity data information. The model parameterization of these 2-D models is chosen in order to keep the diagonal elements of the seismic resolution matrix in the order of 0.2-0.8. The highest values of resolution are detected under the volcano edifice. The imaged 6-km-thick crustal volume underlies a 25 × 45 km2 area. The interpolation is performed by choosing the right grid for a smoothing algorithm which prepares optimum models for asymptotic ray theory methods. Hence this model can be used as a reference model for a 3-D tomographic inversion of seismic data. The 3-D gravity modeling is straightforward. The results of this study clearly image the continuous structure of the Mesozoic carbonate basement top and the connection of the volcano conduit structure to two shallow depressions, which in terms of hazard prevention are the regions through which magma may more easily flow toward the surface and cause possible eruptions.

  11. Three-dimensional fuse deposition modeling of tissue-simulating phantom for biomedical optical imaging

    Science.gov (United States)

    Dong, Erbao; Zhao, Zuhua; Wang, Minjie; Xie, Yanjun; Li, Shidi; Shao, Pengfei; Cheng, Liuquan; Xu, Ronald X.

    2015-12-01

    Biomedical optical devices are widely used for clinical detection of various tissue anomalies. However, optical measurements have limited accuracy and traceability, partially owing to the lack of effective calibration methods that simulate the actual tissue conditions. To facilitate standardized calibration and performance evaluation of medical optical devices, we develop a three-dimensional fuse deposition modeling (FDM) technique for freeform fabrication of tissue-simulating phantoms. The FDM system uses transparent gel wax as the base material, titanium dioxide (TiO2) powder as the scattering ingredient, and graphite powder as the absorption ingredient. The ingredients are preheated, mixed, and deposited at the designated ratios layer-by-layer to simulate tissue structural and optical heterogeneities. By printing the sections of human brain model based on magnetic resonance images, we demonstrate the capability for simulating tissue structural heterogeneities. By measuring optical properties of multilayered phantoms and comparing with numerical simulation, we demonstrate the feasibility for simulating tissue optical properties. By creating a rat head phantom with embedded vasculature, we demonstrate the potential for mimicking physiologic processes of a living system.

  12. Excitonic Phase Transition in the Extended Three-Dimensional Falicov-Kimball Model

    Science.gov (United States)

    Apinyan, V.; Kopeć, T. K.

    2014-07-01

    We study the excitonic phase transition in a system of the conduction band electrons and valence band holes described by the three-dimensional (3D) extended Falicov-Kimball (EFKM) model with the tunable Coulomb interaction between both species. By lowering the temperature, the electron-hole system may become unstable with respect to the formation of the excitons, i.e, electron-hole pairs at temperature , exhibiting a gap in the particle excitation spectrum. To this end we implement the functional integral formulation of the EFKM, where the Coulomb interaction term is expressed in terms of U(1) phase variables conjugate to the local particle number, providing a useful representation of strongly correlated system. The effective action formalism allows us to formulate a problem in the phase-only action in the form of the quantum rotor model and to obtain analytical formulas for the critical lines and other quantities of physical interest like charge gap, chemical potential and the correlation length.

  13. Three-dimensional numerical modeling of thermal regime and slab dehydration beneath Kanto and Tohoku, Japan

    Science.gov (United States)

    Ji, Yingfeng; Yoshioka, Shoichi; Manea, Vlad Constantin; Manea, Marina; Matsumoto, Takumi

    2017-01-01

    Although the thermal regime of the interface between two overlapping subducting plates, such as those beneath Kanto, Japan, is thought to play an important role in affecting the distribution of interplate and intraslab earthquakes, the estimation of the thermal regime remains challenging to date. We constructed a three-dimensional (3-D) thermal convection model to simulate the subduction of the Pacific plate along the Japan Trench and Izu-Bonin Trench, including the subduction of the Philippine Sea beneath Kanto and investigated the slab thermal regime and slab water contents in this complex tectonic setting. Based on the subduction parameters tested in generic models with two flat oceanic plates, a faster or thicker plate subducting in a more trench-normal direction produces a colder slab thermal regime. The interplate temperature of the cold anomaly beneath offshore Kanto was approximately 300°C colder than that beneath offshore Tohoku at a same depth of 40 km and approximately 600°C colder at a depth of 70 km. The convergence between the two subducting plates produces an asymmetric thermal structure in the slab contact zone beneath Kanto, which is characterized by clustered seismicity in the colder southwestern half. The thermo-dehydration state of the mid-ocean ridge basalt near the upper surface of the subducted Pacific plate controls the interplate seismicity beneath the Kanto-Tohoku region according to the spatial concurrence of the thermo-dehydration and seismicity along the megathrust fault zone of the subducted Pacific plate.

  14. Modelled three-dimensional suction accuracy predicts prey capture success in three species of centrarchid fishes

    Science.gov (United States)

    Kane, Emily A.; Higham, Timothy E.

    2014-01-01

    Prey capture is critical for survival, and differences in correctly positioning and timing a strike (accuracy) are likely related to variation in capture success. However, an ability to quantify accuracy under natural conditions, particularly for fishes, is lacking. We developed a predictive model of suction hydrodynamics and applied it to natural behaviours using three-dimensional kinematics of three centrarchid fishes capturing evasive and non-evasive prey. A spheroid ingested volume of water (IVW) with dimensions predicted by peak gape and ram speed was verified with known hydrodynamics for two species. Differences in capture success occurred primarily with evasive prey (64–96% success). Micropterus salmoides had the greatest ram and gape when capturing evasive prey, resulting in the largest and most elongate IVW. Accuracy predicted capture success, although other factors may also be important. The lower accuracy previously observed in M. salmoides was not replicated, but this is likely due to more natural conditions in our study. Additionally, we discuss the role of modulation and integrated behaviours in shaping the IVW and determining accuracy. With our model, accuracy is a more accessible performance measure for suction-feeding fishes, which can be used to explore macroevolutionary patterns of prey capture evolution. PMID:24718455

  15. A Flexible Fringe Projection Vision System with Extended Mathematical Model for Accurate Three-Dimensional Measurement

    Directory of Open Access Journals (Sweden)

    Suzhi Xiao

    2016-04-01

    Full Text Available In order to acquire an accurate three-dimensional (3D measurement, the traditional fringe projection technique applies complex and laborious procedures to compensate for the errors that exist in the vision system. However, the error sources in the vision system are very complex, such as lens distortion, lens defocus, and fringe pattern nonsinusoidality. Some errors cannot even be explained or rendered with clear expressions and are difficult to compensate directly as a result. In this paper, an approach is proposed that avoids the complex and laborious compensation procedure for error sources but still promises accurate 3D measurement. It is realized by the mathematical model extension technique. The parameters of the extended mathematical model for the ’phase to 3D coordinates transformation’ are derived using the least-squares parameter estimation algorithm. In addition, a phase-coding method based on a frequency analysis is proposed for the absolute phase map retrieval to spatially isolated objects. The results demonstrate the validity and the accuracy of the proposed flexible fringe projection vision system on spatially continuous and discontinuous objects for 3D measurement.

  16. Continuous data assimilation for the three-dimensional Brinkman–Forchheimer-extended Darcy model

    KAUST Repository

    Markowich, Peter A.

    2016-03-09

    In this paper we introduce and analyze an algorithm for continuous data assimilation for a three-dimensional Brinkman-Forchheimer-extended Darcy (3D BFeD) model of porous media. This model is believed to be accurate when the flow velocity is too large for Darcy\\'s law to be valid, and additionally the porosity is not too small. The algorithm is inspired by ideas developed for designing finite-parameters feedback control for dissipative systems. It aims to obtain improved estimates of the state of the physical system by incorporating deterministic or noisy measurements and observations. Specifically, the algorithm involves a feedback control that nudges the large scales of the approximate solution toward those of the reference solution associated with the spatial measurements. In the first part of the paper, we present a few results of existence and uniqueness of weak and strong solutions of the 3D BFeD system. The second part is devoted to the convergence analysis of the data assimilation algorithm. © 2016 IOP Publishing Ltd & London Mathematical Society.

  17. Three-dimensional modelling of thin liquid films over spinning disks

    Science.gov (United States)

    Zhao, Kun; Wray, Alex; Yang, Junfeng; Matar, Omar

    2016-11-01

    In this research the dynamics of a thin film flowing over a rapidly spinning, horizontal disk is considered. A set of non-axisymmetric evolution equations for the film thickness, radial and azimuthal flow rates are derived using a boundary-layer approximation in conjunction with the Karman-Polhausen approximation for the velocity distribution in the film. These highly nonlinear partial differential equations are then solved numerically in order to reveal the formation of two and three-dimensional large-amplitude waves that travel from the disk inlet to its periphery. The spatio-temporal profile of film thickness provides us with visualization of flow structures over the entire disk and by varying system parameters(volumetric flow rate of fluid and rotational speed of disk) different wave patterns can be observed, including spiral, concentric, smooth waves and wave break-up in exceptional conditions. Similar types of waves can be found by experimentalists in literature and CFD simulation and our results show good agreement with both experimental and CFD results. Furthermore, the semi-parabolic velocity profile assumed in our model under the waves is directly compared with CFD data in various flow regimes in order to validate our model. EPSRC UK Programme Grant EP/K003976/1.

  18. Continuous data assimilation for the three-dimensional Brinkman-Forchheimer-extended Darcy model

    CERN Document Server

    Markowich, Peter A; Trabelsi, Saber

    2015-01-01

    In this paper we introduce and analyze an algorithm for continuous data assimilation for a three-dimensional Brinkman-Forchheimer-extended Darcy (3D BFeD) model of porous media. This model is believed to be accurate when the flow velocity is too large for Darcy's law to be valid, and additionally the porosity is not too small. The algorithm is inspired by ideas developed for designing finite-parameters feedback control for dissipative systems. It aims to obtaining improved estimates of the state of the physical system by incorporating deterministic or noisy measurements and observations. Specifically, the algorithm involves a feedback control that nudges the large scales of the approximate solution toward those of the reference solution associated with the spatial measurements. In the first part of the paper, we present few results of existence and uniqueness of weak and strong solutions of the 3D BFeD system. The second part is devoted to the setting and convergence analysis of the data assimilation algorith...

  19. Regional three-dimensional seismic velocity model of the crust and uppermost mantle of northern California

    Science.gov (United States)

    Thurber, C.; Zhang, H.; Brocher, T.; Langenheim, V.

    2009-01-01

    We present a three-dimensional (3D) tomographic model of the P wave velocity (Vp) structure of northern California. We employed a regional-scale double-difference tomography algorithm that incorporates a finite-difference travel time calculator and spatial smoothing constraints. Arrival times from earthquakes and travel times from controlled-source explosions, recorded at network and/or temporary stations, were inverted for Vp on a 3D grid with horizontal node spacing of 10 to 20 km and vertical node spacing of 3 to 8 km. Our model provides an unprecedented, comprehensive view of the regional-scale structure of northern California, putting many previously identified features into a broader regional context and improving the resolution of a number of them and revealing a number of new features, especially in the middle and lower crust, that have never before been reported. Examples of the former include the complex subducting Gorda slab, a steep, deeply penetrating fault beneath the Sacramento River Delta, crustal low-velocity zones beneath Geysers-Clear Lake and Long Valley, and the high-velocity ophiolite body underlying the Great Valley. Examples of the latter include mid-crustal low-velocity zones beneath Mount Shasta and north of Lake Tahoe. Copyright 2009 by the American Geophysical Union.

  20. Three-dimensional Simulations of Pure Deflagration Models for Thermonuclear Supernovae

    CERN Document Server

    Long, Min; van Rossum, Daniel R; Diemer, Benedikt; Graziani, Carlo; Kessler, Richard; Meyer, Bradley; Rich, Paul; Lamb, Don Q

    2013-01-01

    We present a systematic study of the pure deflagration model of Type Ia supernovae, using three-dimensional, high-resolution, full-star hydrodynamical simulations, nucleosynthetic yields calculated using Lagrangian tracer particles, light curves calculated using radiation transport, and evaluation the simulations through comparison of their predicted light curves with many observed SNe Ia using the SALT2 data-driven model. We explore the effect on the properties of the simulations of different initial conditions by varying the number of ignition points and the radius of the sphere in which they are confined. The number of ignition points ranges from 63 to 3500, and they are placed randomly within confining spheres with radii of 128 km, 256 km, and 384 km whose centers coincide with the center of the white dwarf. The nuclear energy released and the final products of the nuclear burning are diverse. We find that the nuclear energy released, the kinetic energy, and the distributions of the overall mass density a...

  1. Three-Dimensional Geometrical Modelling of Wild Boar Head by Reverse Engineering Technology

    Institute of Scientific and Technical Information of China (English)

    Liang Xu; Min-xu Lin; Jian-qiao Li; Zhao-liang Wang; B. Chirende

    2008-01-01

    In this paper, a wild boar head was taken as the bionic research object for the development of new ridgers, a kind of plough."The reverse engineering technology was adopted to obtain the surface geometrical information of the head. Several three-dimensional (3D) point clouds of the head were captured first using a non-touch laser scanner, and an integrated point cloud was generated by aligning these point clouds using UG/Imageware. Then, the digital surface model of the head was rebuilt by means of CATIA. The characteristic curves of the surface model were analyzed. The results show that the average error between the rebuilt surface and the point cloud is -0.431 mm. The max curvature of the ridge on the neb of the head is 0.187 mm-1, and the max and rain Gauss curvatures on the surface are 0.008 mm-2 and -0.002 mm-2. These geometrical information are the essential parameters for biomimetics study of the ridger.

  2. Improved convergence and stability properties in a three-dimensional higher-order ice sheet model

    Directory of Open Access Journals (Sweden)

    J. J. Fürst

    2011-12-01

    Full Text Available We present a finite difference implementation of a three-dimensional higher-order ice sheet model. In comparison to a conventional centred difference discretisation it enhances both numerical stability and convergence. In order to achieve these benefits the discretisation of the governing force balance equation makes extensive use of information on staggered grid points. Using the same iterative solver, a centred difference discretisation that operates exclusively on the regular grid serves as a reference. The reprise of the ISMIP-HOM experiments indicates that both discretisations are capable of reproducing the higher-order model inter-comparison results. This setup allows a direct comparison of the two numerical implementations also with respect to their convergence behaviour. First and foremost, the new finite difference scheme facilitates convergence by a factor of up to 7 and 2.6 in average. In addition to this decrease in computational costs, the accuracy for the resultant velocity field can be chosen higher in the novel finite difference implementation. Changing the discretisation also prevents build-up of local field irregularites that occasionally cause divergence of the solution for the reference discretisation.

    The improved behaviour makes the new discretisation more reliable for extensive application to real ice geometries. Higher accuracy and robust numerics are crucial in time dependent applications since numerical oscillations in the velocity field of subsequent time steps are attenuated and divergence of the solution is prevented.

  3. Three-Dimensional Magnetohydrodynamic Modeling of the Solar Wind Including Pickup Protons and Turbulence Transport

    Science.gov (United States)

    Usmanov, Arcadi V.; Goldstein, Melvyn L.; Matthaeus, William H.

    2012-01-01

    To study the effects of interstellar pickup protons and turbulence on the structure and dynamics of the solar wind, we have developed a fully three-dimensional magnetohydrodynamic solar wind model that treats interstellar pickup protons as a separate fluid and incorporates the transport of turbulence and turbulent heating. The governing system of equations combines the mean-field equations for the solar wind plasma, magnetic field, and pickup protons and the turbulence transport equations for the turbulent energy, normalized cross-helicity, and correlation length. The model equations account for photoionization of interstellar hydrogen atoms and their charge exchange with solar wind protons, energy transfer from pickup protons to solar wind protons, and plasma heating by turbulent dissipation. Separate mass and energy equations are used for the solar wind and pickup protons, though a single momentum equation is employed under the assumption that the pickup protons are comoving with the solar wind protons.We compute the global structure of the solar wind plasma, magnetic field, and turbulence in the region from 0.3 to 100 AU for a source magnetic dipole on the Sun tilted by 0 deg - .90 deg and compare our results with Voyager 2 observations. The results computed with and without pickup protons are superposed to evaluate quantitatively the deceleration and heating effects of pickup protons, the overall compression of the magnetic field in the outer heliosphere caused by deceleration, and the weakening of corotating interaction regions by the thermal pressure of pickup protons.

  4. A three-dimensional musculoskeletal model for gait analysis. Anatomical variability estimates.

    Science.gov (United States)

    White, S C; Yack, H J; Winter, D A

    1989-01-01

    Three-dimensional coordinates defining the origin and insertion of 40 muscle units, and bony landmarks for osteometric scaling were identified on dry bone specimens. Interspecimen coordinate differences along the anterior-posterior axis of the pelvis and the long bone axes of the pelvis, femur and leg were reduced by scaling but landmark differences along the other axes were not. The coordinates were mapped to living subjects using close-range photogrammetry to locate superficial reference markers. The error of predicting the positions of internal coordinates was assessed by comparing joint centre locations calculated from local axes defining the orientation of segments superior and inferior to a joint. A difference was attributed to: anatomical variability not accounted for by scaling; errors in identifying and placing reference landmarks; the accuracy of locating markers using photogrammetry and error introduced by marker oscillation during movement. Anatomical differences between specimens are one source of error in defining a musculoskeletal model but larger errors are introduced when such models are mapped to living subjects.

  5. A computationally-efficient secondary organic aerosol module for three-dimensional air quality models

    Science.gov (United States)

    Liu, P.; Zhang, Y.

    2008-07-01

    Accurately simulating secondary organic aerosols (SOA) in three-dimensional (3-D) air quality models is challenging due to the complexity of the physics and chemistry involved and the high computational demand required. A computationally-efficient yet accurate SOA module is necessary in 3-D applications for long-term simulations and real-time air quality forecasting. A coupled gas and aerosol box model (i.e., 0-D CMAQ-MADRID 2) is used to optimize relevant processes in order to develop such a SOA module. Solving the partitioning equations for condensable volatile organic compounds (VOCs) and calculating their activity coefficients in the multicomponent mixtures are identified to be the most computationally-expensive processes. The two processes can be speeded up by relaxing the error tolerance levels and reducing the maximum number of iterations of the numerical solver for the partitioning equations for organic species; conditionally activating organic-inorganic interactions; and parameterizing the calculation of activity coefficients for organic mixtures in the hydrophilic module. The optimal speed-up method can reduce the total CPU cost by up to a factor of 31.4 from benchmark under the rural conditions with 2 ppb isoprene and by factors of 10 71 under various test conditions with 2 10 ppb isoprene and >40% relative humidity while maintaining ±15% deviation. These speed-up methods are applicable to other SOA modules that are based on partitioning theories.

  6. Three-Dimensional Delayed-Detonation Model of Type Ia Supernova

    CERN Document Server

    Gamezo, V N; Oran, E S; Gamezo, Vadim N.; Khokhlov, Alexei M.; Oran, Elaine S.

    2004-01-01

    We study a Type Ia supernova explosion using large-scale three-dimensional numerical simulations based on reactive fluid dynamics with a simplified mechanism for nuclear reactions and energy release. The initial deflagration stage of the explosion involves a subsonic turbulent thermonuclear flame propagating in the gravitational field of an expanding white dwarf. The deflagration produces an inhomogeneous mixture of unburned carbon and oxygen with intermediate-mass and iron-group elements in central parts of the star. During the subsequent detonation stage, a supersonic detonation wave propagates through the material unburned by the deflagration. The total energy released in this delayed-detonation process, (1.3-1.6)x10^51 ergs, is consistent with a typical range of kinetic energies obtained from observations. In contrast to the deflagration model that releases only about 0.6x10^51 ergs, the delayed-detonation model does not leave carbon, oxygen, and intermediate-mass elements in central parts of a white dwar...

  7. Gravity wave propagation in the realistic atmosphere based on a three-dimensional transfer function model

    Directory of Open Access Journals (Sweden)

    L. Sun

    2007-10-01

    Full Text Available In order to study the filter effect of the background winds on the propagation of gravity waves, a three-dimensional transfer function model is developed on the basis of the complex dispersion relation of internal gravity waves in a stratified dissipative atmosphere with background winds. Our model has successfully represented the main results of the ray tracing method, e.g. the trend of the gravity waves to travel in the anti-windward direction. Furthermore, some interesting characteristics are manifest as follows: (1 The method provides the distribution characteristic of whole wave fields which propagate in the way of the distorted concentric circles at the same altitude under the control of the winds. (2 Through analyzing the frequency and wave number response curve of the transfer function, we find that the gravity waves in a wave band of about 15–30 min periods and of about 200–400 km horizontal wave lengths are most likely to propagate to the 300-km ionospheric height. Furthermore, there is an obvious frequency deviation for gravity waves propagating with winds in the frequency domain. The maximum power of the transfer function with background winds is smaller than that without background winds. (3 The atmospheric winds may act as a directional filter that will permit gravity wave packets propagating against the winds to reach the ionospheric height with minimum energy loss.

  8. Extracting Three Dimensional Surface Model of Human Kidney from the Visible Human Data Set using Free Software

    CERN Document Server

    P, Kirana Kumara

    2013-01-01

    Three dimensional digital model of a representative human kidney is needed for a surgical simulator that is capable of simulating a laparoscopic surgery involving kidney. Buying a three dimensional computer model of a representative human kidney, or reconstructing a human kidney from an image sequence using commercial software, both involve (sometimes significant amount of) money. In this paper, author has shown that one can obtain a three dimensional surface model of human kidney by making use of images from the Visible Human Data Set and a few free software packages (ImageJ, ITK-SNAP, and MeshLab in particular). Images from the Visible Human Data Set, and the software packages used here, both do not cost anything. Hence, the practice of extracting the geometry of a representative human kidney for free, as illustrated in the present work, could be a free alternative to the use of expensive commercial software or to the purchase of a digital model.

  9. Verifying three-dimensional skull model reconstruction using cranial index of symmetry.

    Directory of Open Access Journals (Sweden)

    Woon-Man Kung

    Full Text Available BACKGROUND: Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D CAD modeling. Thus, it is quite important to establish a symmetrically regular CAD/CAM reconstruction prior to depressing the contour. The purpose of this study is to verify the aesthetic outcomes of CAD models with regular contours using cranial index of symmetry (CIS. MATERIALS AND METHODS: From January 2011 to June 2012, decompressive craniectomy (DC was performed for 15 consecutive patients in our institute. 3-D CAD models of skull defects were reconstructed using commercial software. These models were checked in terms of symmetry by CIS scores. RESULTS: CIS scores of CAD reconstructions were 99.24±0.004% (range 98.47-99.84. CIS scores of these CAD models were statistically significantly greater than 95%, identical to 99.5%, but lower than 99.6% (p<0.001, p = 0.064, p = 0.021 respectively, Wilcoxon matched pairs signed rank test. These data evidenced the highly accurate symmetry of these CAD models with regular contours. CONCLUSIONS: CIS calculation is beneficial to assess aesthetic outcomes of CAD-reconstructed skulls in terms of cranial symmetry. This enables further accurate CAD models and CAM cranial implants with depressed contours, which are essential in patients with difficult scalp adaptation.

  10. Insights on slab-driven mantle flow from advances in three-dimensional modelling

    Science.gov (United States)

    Jadamec, Margarete A.

    2016-10-01

    The wealth of seismic observations collected over the past 20 years has raised intriguing questions about the three-dimensional (3D) nature of the mantle flow field close to subduction zones and provided a valuable constraint for how the plate geometry may influence mantle flow proximal to the slab. In geodynamics, there has been a new direction of subduction zone modelling that has explored the 3D nature of slab-driven mantle flow, motivated in part by the observations from shear wave splitting, but also by the observed variations in slab geometries worldwide. Advances in high-performance computing are now allowing for an unprecedented level of detail to be incorporated into numerical models of subduction. This paper summarizes recent advances from 3D geodynamic models that reveal the complex nature of slab-driven mantle flow, including trench parallel flow, toroidal flow around slab edges, mantle upwelling at lateral slab edges, and small scale convection within the mantle wedge. This implies slab-driven mantle deformation zones occur in the asthenosphere proximal to the slab, wherein the mantle may commonly flow in a different direction and rate than the surface plates, implying laterally variable plate-mantle coupling. The 3D slab-driven mantle flow can explain, in part, the lateral transport of geochemical signatures in subduction zones. In addition, high-resolution geographically referenced models can inform the interpretation of slab structure, where seismic data are lacking. The incorporation of complex plate boundaries into high-resolution, 3D numerical models opens the door to a new avenue of research in model construction, data assimilation, and modelling workflows, and gives 3D immersive visualization a new role in scientific discovery.

  11. Modeling, Control and Simulation of Three-Dimensional Robotic Systems with Applications to Biped Locomotion.

    Science.gov (United States)

    Zheng, Yuan-Fang

    A three-dimensional, five link biped system is established. Newton-Euler state space formulation is employed to derive the equations of the system. The constraint forces involved in the equations can be eliminated by projection onto a smaller state space system for deriving advanced control laws. A model-referenced adaptive control scheme is developed to control the system. Digital computer simulations of point to point movement are carried out to show that the model-referenced adaptive control increases the dynamic range and speeds up the response of the system in comparison with linear and nonlinear feedback control. Further, the implementation of the controller is simpler. Impact effects of biped contact with the environment are modeled and studied. The instant velocity change at the moment of impact is derived as a function of the biped state and contact speed. The effects of impact on the state, as well as constraints are studied in biped landing on heels and toes simultaneously or on toes first. Rate and nonlinear position feedback are employed for stability of the biped after the impact. The complex structure of the foot is properly modeled. A spring and dashpot pair is suggested to represent the action of plantar fascia during the impact. This action prevents the arch of the foot from collapsing. A mathematical model of the skeletal muscle is discussed. A direct relationship between the stimulus rate and the active state is established. A piecewise linear relation between the length of the contractile element and the isometric force is considered. Hill's characteristic equation is maintained for determining the actual output force during different shortening velocities. A physical threshold model is proposed for recruitment which encompasses the size principle, its manifestations and exceptions to the size principle. Finally the role of spindle feedback in stability of the model is demonstrated by study of a pair of muscles.

  12. The Adriatic Sea ecosystem seasonal cycle: Validation of a three-dimensional numerical model

    Science.gov (United States)

    Polimene, L.; Pinardi, N.; Zavatarelli, M.; Colella, S.

    2006-03-01

    A three-dimensional coupled biogeochemical-circulation numerical model was implemented in the Adriatic Sea. The biogeochemical part of the model is a development of the European Seas Regional Ecosystem Model (ERSEM II), while the circulation model is the Adriatic Sea implementation of the Princeton Ocean Model (POM). The model was run under climatological monthly varying atmospheric and river runoff forcing in order to reproduce seasonal circulation and biochemical processes. Simulated chlorophyll, nutrient, and plankton biomass and distributions were analyzed and compared with the data coming from a historic in situ data set and a newly constructed chlorophyll climatological data set from SeaWiFS. Model reproduction of the chlorophyll seasonal cycle is, at least qualitatively, in good agreement both with the remote sensing and the in situ data. However, larger production than observed is simulated during the late winter and spring, probably due to inadequate knowledge of the nutrient inputs. Comparison between simulated nutrients and observations shows a general underestimation for orthophosphate and orthosilicate, while nitrate is mostly overestimated. The shape of the nutrient-simulated profiles is in qualitatively good agreement with observations in the central and southern part of the basin. The analysis of the ratio between the large (>20 μm) and small (<20 μm) phytoplankton biomass and between the bacteria and phytoplankton biomass shows that the Western Adriatic Coastal Current is not only a physical frontal structure but also an ecosystem front, where larger phytoplankton grow on the coastal side while smaller ones are present offshore where the microbial loop is the dominant food web.

  13. Three-dimensional density model of the Nazca plate and the Andean continental margin

    Science.gov (United States)

    Tassara, AndréS.; GöTze, Hans-Jürgen; Schmidt, Sabine; Hackney, Ron

    2006-09-01

    We forward modeled the Bouguer anomaly in a region encompassing the Pacific Ocean (85°W) and the Andean margin (60°W) between northern Peru (5°S) and Patagonia (45°S). The three-dimensional density model that reproduces the gravity field is a continental-scale representation of density structure to 410 km depth that characterizes the mantle and crust of the oceanic Nazca plate, subducted slab and continental margin with a minimum number of bodies. We predefined the density of each body after studying the dependency of density on composition of crustal and mantle materials and pressure-temperature conditions appropriate for the Andean setting. A database of independent geophysical information constrains the geometry of the top of the subducted slab, locally the Moho of the oceanic and continental crusts and, indirectly, the lithosphere-asthenosphere boundary underneath the continental plate. Other boundaries, notably the intracrustal density discontinuity separating upper from lower crust below the continent, were not constrained and their geometry is the result of fitting the observed and calculated Bouguer anomaly during forward modeling. This contribution presents the model to the Andean geoscientific community and contains some tools, like a sensitivity analysis, that helps potential users of the model to interpret its results. We describe and discuss some of these results in order to illustrate the application of the model to the study of a wide range of phenomena (e.g., modification of oceanic plate structure by hot spots, shape of the subducted slab, thermal structure of the continental lithosphere, compensation mechanism and formation of orogenic relieve, causes of Andean segmentation).

  14. Improved water resource management using three dimensional groundwater modelling for a highly complex environmental

    Science.gov (United States)

    Moeck, Christian; Affolter, Annette; Radny, Dirk; Auckenthaler, Adrian; Huggenberger, Peter; Schirmer, Mario

    2017-04-01

    Proper allocation and management of groundwater is an important and critical challenge under rising water demands of various environmental sectors but good groundwater quality is often limited because of urbanization and contamination of aquifers. Given the predictive capability of groundwater models, they are often the only viable means of providing input to water management decisions. However, modelling flow and transport processes can be difficult due to their unknown subsurface heterogeneity and typically unknown distribution of contaminants. As a result water resource management tasks are based on uncertain assumption on contaminants patterns and this uncertainty is typically not incorporated into the assessment of risks associated with different proposed management scenarios. A three-dimensional groundwater model was used to improve water resource management for a study area, where drinking water production is close to different former landfills and industrial areas. To avoid drinking water contamination, artificial groundwater recharge with surface water into the gravel aquifer is used to create a hydraulic barrier between contaminated sites and drinking water extraction wells. The model was used for simulating existing and proposed water management strategies as a tool to ensure the utmost security for drinking water. A systematic evaluation of the flow direction and magnitude between existing observation points using a newly developed three point estimation method for a large amount of scenarios was carried out. Due to the numerous observation points 32 triangles (three-points) were created which cover the entire area around the Hardwald. We demonstrated that systematically applying our developed methodology helps to identify important locations which are sensitive to changing boundary conditions and where additional protection is required without highly computational demanding transport modelling. The presented integrated approach using the flow direction

  15. A quasi-analytical boundary condition for three-dimensional finite difference electromagnetic modeling

    Science.gov (United States)

    Mehanee, Salah; Zhdanov, Michael

    2004-12-01

    Numerical modeling of the quasi-static electromagnetic (EM) field in the frequency domain in a three-dimensional (3-D) inhomogeneous medium is a very challenging problem in computational physics. We present a new approach to the finite difference (FD) solution of this problem. The FD discretization of the EM field equation is based on the balance method. To compute the boundary values of the anomalous electric field we solve for, we suggest using the fast and accurate quasi-analytical (QA) approximation, which is a special form of the extended Born approximation. We call this new condition a quasi-analytical boundary condition (QA BC). This approach helps to reduce the size of the modeling domain without losing the accuracy of calculation. As a result, a larger number of grid cells can be used to describe the anomalous conductivity distribution within the modeling domain. The developed numerical technique allows application of a very fine discretization to the area with anomalous conductivity only because there is no need to move the boundaries too far from the inhomogeneous region, as required by the traditional Dirichlet or Neumann conditions for anomalous field with boundary values equal to zero. Therefore this approach increases the efficiency of FD modeling of the EM field in a medium with complex structure. We apply the QA BC and the traditional FD (with large grid and zero BC) methods to complicated models with high resistivity contrast. The numerical modeling demonstrates that the QA BC results in 5 times matrix size reduction and 2-3 times decrease in computational time.

  16. Modeling Vehicle Collision Angle in Traffic Crashes Based on Three-Dimensional Laser Scanning Data

    Directory of Open Access Journals (Sweden)

    Nengchao Lyu

    2017-02-01

    Full Text Available In road traffic accidents, the analysis of a vehicle’s collision angle plays a key role in identifying a traffic accident’s form and cause. However, because accurate estimation of vehicle collision angle involves many factors, it is difficult to accurately determine it in cases in which less physical evidence is available and there is a lack of monitoring. This paper establishes the mathematical relation model between collision angle, deformation, and normal vector in the collision region according to the equations of particle deformation and force in Hooke’s law of classical mechanics. At the same time, the surface reconstruction method suitable for a normal vector solution is studied. Finally, the estimation model of vehicle collision angle is presented. In order to verify the correctness of the model, verification of multi-angle collision experiments and sensitivity analysis of laser scanning precision for the angle have been carried out using three-dimensional (3D data obtained by a 3D laser scanner in the collision deformation zone. Under the conditions with which the model has been defined, validation results show that the collision angle is a result of the weighted synthesis of the normal vector of the collision point and the weight value is the deformation of the collision point corresponding to normal vectors. These conclusions prove the applicability of the model. The collision angle model proposed in this paper can be used as the theoretical basis for traffic accident identification and cause analysis. It can also be used as a theoretical reference for the study of the impact deformation of elastic materials.

  17. Advantages and limitations of three-dimensional geological modelling for cultural heritage management

    Science.gov (United States)

    de Beer, Johannes

    2013-04-01

    Developments in collection and digitisation of geoarchaeological data now allow geoscientists to develop meaningful 3D spatial models of the subsurface. Geological models of the subsurface have been constructed for regional (urban) areas to predict ground conditions and reduce risk and uncertainty in urban planning on a regional scale. Risk assessment at the smaller scale of archaeological sites, for example for in-situ preservation, not only requires delimitation of cultural deposits with respect to natural geological formations, but also systematic collection, interpretation and visualisation of intra-formational geoarchaeological information. The Norwegian Standard for archaeological monitoring of cultural deposits (2009) provides the framework for systematic data collection, interpretation and monitoring over time. It enables an objective evaluation of variations between e.g. preservation state and environmental preservation conditions, a.o. based on soil moisture content, groundwater level and quality variations, and temperature variations within cultural deposits. The standard allows comparison of conditions both within and between archaeological sites. The inclusion of this monitoring data within a geological model of the site results in an integrated geoarchaeological model that can be used for both ground prediction and risk assessment with respect to for example in-situ preservation. However, archaeological sites and their surroundings, particularly in urban areas, are often characterised by large heterogeneities and a complex mixture of natural and anthropogenic deposits. At a certain level of complexity and spatial scale, modelling efforts will go beyond the advantages that can be gained. This presentation examines the advantages and the limitations of three-dimensional geological modelling at small scale urban archaeological sites for cultural heritage management.

  18. Three-dimensional modeling of diesel engine intake flow, combustion and emissions-2

    Science.gov (United States)

    Reitz, R. D.; Rutland, C. J.

    1993-01-01

    A three-dimensional computer code, KIVA, is being modified to include state-of-the-art submodels for diesel engine flow and combustion. Improved and/or new submodels which have already been implemented and previously reported are: wall heat transfer with unsteadiness and compressibility, laminar-turbulent characteristic time combustion with unburned HC and Zeldo'vich NO(x), and spray/wall impingement with rebounding and sliding drops. Progress on the implementation of improved spray drop drag and drop breakup models, the formulation and testing of a multistep kinetics ignition model, and preliminary soot modeling results are described. In addition, the use of a block structured version of KIVA to model the intake flow process is described. A grid generation scheme was developed for modeling realistic (complex) engine geometries, and computations were made of intake flow in the ports and combustion chamber of a two-intake-value engine. The research also involves the use of the code to assess the effects of subprocesses on diesel engine performance. The accuracy of the predictions is being tested by comparisons with engine experiments. To date, comparisons were made with measured engine cylinder pressure, temperature and heat flux data, and the model results are in good agreement with the experiments. Work is in progress that will allow validation of in-cylinder flow and soot formation predictions. An engine test facility is described that is being used to provide the needed validation data. Test results were obtained showing the effect of injection rate and split injections on engine performance and emissions.

  19. THREE-DIMENSIONAL RADIO AND X-RAY MODELING AND DATA ANALYSIS SOFTWARE: REVEALING FLARE COMPLEXITY

    Energy Technology Data Exchange (ETDEWEB)

    Nita, Gelu M.; Fleishman, Gregory D.; Gary, Dale E. [Center For Solar-Terrestrial Research, New Jersey Institute of Technology, Newark, NJ 07102 (United States); Kuznetsov, Alexey A. [Institute of Solar-Terrestrial Physics, Irkutsk 664033 (Russian Federation); Kontar, Eduard P. [School of Physics and Astronomy, The University of Glasgow, Glasgow G12 8QQ (United Kingdom)

    2015-02-01

    Many problems in solar physics require analysis of imaging data obtained in multiple wavelength domains with differing spatial resolution in a framework supplied by advanced three-dimensional (3D) physical models. To facilitate this goal, we have undertaken a major enhancement of our IDL-based simulation tools developed earlier for modeling microwave and X-ray emission. The enhanced software architecture allows the user to (1) import photospheric magnetic field maps and perform magnetic field extrapolations to generate 3D magnetic field models; (2) investigate the magnetic topology by interactively creating field lines and associated flux tubes; (3) populate the flux tubes with user-defined nonuniform thermal plasma and anisotropic, nonuniform, nonthermal electron distributions; (4) investigate the spatial and spectral properties of radio and X-ray emission calculated from the model; and (5) compare the model-derived images and spectra with observational data. The package integrates shared-object libraries containing fast gyrosynchrotron emission codes, IDL-based soft and hard X-ray codes, and potential and linear force-free field extrapolation routines. The package accepts user-defined radiation and magnetic field extrapolation plug-ins. We use this tool to analyze a relatively simple single-loop flare and use the model to constrain the magnetic 3D structure and spatial distribution of the fast electrons inside this loop. We iteratively compute multi-frequency microwave and multi-energy X-ray images from realistic magnetic flux tubes obtained from pre-flare extrapolations, and compare them with imaging data obtained by SDO, NoRH, and RHESSI. We use this event to illustrate the tool's use for the general interpretation of solar flares to address disparate problems in solar physics.

  20. IPH-TRIM3D-PCLake: A three-dimensional complex dynamic model for subtropical aquatic ecosystems

    NARCIS (Netherlands)

    Fragoso, C.R.; Nes, van E.H.; Janse, J.H.; Motta Marques, da D.

    2009-01-01

    This paper presents IPH-TRIM3D-PCLake, a three-dimensional complex dynamic model for subtropical aquatic ecosystems. It combines a spatially explicit hydrodynamic model with a water-quality and biotic model of ecological interactions. The software, which is freely available for research purposes, ha

  1. Three-dimensional semi-idealized model for tidal motion in tidal estuaries: an application to the Ems estuary

    NARCIS (Netherlands)

    Kumar, Mohit; Schuttelaars, H.M.; Roos, P.C.; Möller, M.

    2016-01-01

    In this paper, a three-dimensional semi-idealized model for tidal motion in a tidal estuary of arbitrary shape and bathymetry is presented. This model aims at bridging the gap between idealized and complex models. The vertical profiles of the velocities are obtained analytically in terms of the firs

  2. Three-dimensional flow and vorticity transport in idealized airway model from laminar to turbulent regimes

    Science.gov (United States)

    Jalal, Sahar; van de Moortele, Tristan; Nemes, Andras; Eslam Panah, Azar; Coletti, Filippo

    2015-11-01

    The presence and intensity of secondary flows formed by the inhaled air during respiration has important consequences for gas exchange and particle transport in the lungs. Here we focus on the formation and persistence of such secondary flows by experimentally studying the steady inspiration in an idealized airway model. The geometry consists of a symmetric planar double bifurcation that respects the geometrical proportions of the human bronchial tree. Physiologically relevant Reynolds numbers from 100 to 5000 are investigated, ranging from laminar to turbulent regimes. The time-averaged, three-dimensional velocity fields are obtained from Magnetic Resonance Imaging (MRI), providing detailed distributions of vorticity, circulation, and secondary flow strength. Information on the velocity fluctuations are obtained by Particle Image Velocimetry (PIV). The measurements highlight the effect of the Reynolds number on the momentum transport, flow partitioning at the bifurcations, strength and sense of rotation of the longitudinal vortices. A marked change in topology is found at a specific Reynolds number, above which the influence of the upstream flow prevails over the effect of the local geometry. Finally, turbulence and its role in the mean vorticity transport are also discussed.

  3. BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models.

    Directory of Open Access Journals (Sweden)

    Cemal Cagatay Bilgin

    Full Text Available BioSig3D is a computational platform for high-content screening of three-dimensional (3D cell culture models that are imaged in full 3D volume. It provides an end-to-end solution for designing high content screening assays, based on colony organization that is derived from segmentation of nuclei in each colony. BioSig3D also enables visualization of raw and processed 3D volumetric data for quality control, and integrates advanced bioinformatics analysis. The system consists of multiple computational and annotation modules that are coupled together with a strong use of controlled vocabularies to reduce ambiguities between different users. It is a web-based system that allows users to: design an experiment by defining experimental variables, upload a large set of volumetric images into the system, analyze and visualize the dataset, and either display computed indices as a heatmap, or phenotypic subtypes for heterogeneity analysis, or download computed indices for statistical analysis or integrative biology. BioSig3D has been used to profile baseline colony formations with two experiments: (i morphogenesis of a panel of human mammary epithelial cell lines (HMEC, and (ii heterogeneity in colony formation using an immortalized non-transformed cell line. These experiments reveal intrinsic growth properties of well-characterized cell lines that are routinely used for biological studies. BioSig3D is being released with seed datasets and video-based documentation.

  4. Test-particle acceleration in a hierarchical three-dimensional turbulence model

    Energy Technology Data Exchange (ETDEWEB)

    Dalena, S.; Rappazzo, A. F.; Matthaeus, W. H. [Bartol Research Institute, Department of Physics and Astronomy, University of Delaware, DE 19716 (United States); Dmitruk, P. [Departamento de Fisica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, 1428 Buenos Aires (Argentina); Greco, A., E-mail: serena.dalena@fis.unical.it [Dipartimento di Fisica, Università della Calabria, I-87036 Cosenza (Italy)

    2014-03-10

    The acceleration of charged particles is relevant to the solar corona over a broad range of scales and energies. High-energy particles are usually detected in concomitance with large energy release events like solar eruptions and flares. Nevertheless, acceleration can occur at smaller scales, characterized by dynamical activity near current sheets. To gain insight into the complex scenario of coronal charged particle acceleration, we investigate the properties of acceleration with a test-particle approach using three-dimensional magnetohydrodynamic (MHD) models. These are obtained from direct solutions of the reduced MHD equations, well suited for a plasma embedded in a strong axial magnetic field, relevant to the inner heliosphere. A multi-box, multiscale technique is used to solve the equations of motion for protons. This method allows us to resolve an extended range of scales present in the system, namely, from the ion inertial scale of the order of a meter up to macroscopic scales of the order of 10 km (1/100th of the outer scale of the system). This new technique is useful to identify the mechanisms that, acting at different scales, are responsible for acceleration to high energies of a small fraction of the particles in the coronal plasma. We report results that describe acceleration at different stages over a broad range of time, length, and energy scales.

  5. Three Dimensional Modeling of Pulverized Coal combustion in a 600MW Corner Fired Boiler

    Institute of Scientific and Technical Information of China (English)

    SandroDal-Secco

    2000-01-01

    The three-dimensional code ESTET developed at the LNH has been used to predict the reactive flow in a 600 W coal fired boiler,Assuming a no-slip condition between the gas and the coal,the equations for a gas-particle mixture can e written.The pulverized coal particle size distribution is represented by a discrete number of particle size groups determined by the measured fineness distrbution.The combustion models taking into account the pyrolysis of the particle and the heterogeneous combustion of char have been validated using intensive measurements performed on the 600MW utility boiler.Heat fluxes were measured along the walls of the furnace and satisfactory agreement between computation and measurements has been achieved in terms of maximum flux location and heat flux intensity.Local measurements of velocities using LDV probe.gas temperature and gas species concentrations were performed in the vicinity of one burner and compared with the computed variables.Again we have observed a good agreement between the computations and the measurements in terms of jet penetration,temperature distribution.oxygen concentration and ash content.

  6. Three-dimensional laboratory modeling of the Tonga trench and Samoan plume interaction

    Science.gov (United States)

    Druken, K. A.; Kincaid, C. R.; Pockalny, R. A.; Griffiths, R. W.; Hart, S. R.

    2009-12-01

    Plume processes occurring near ridge centers (e.g. Iceland) or mid-plate (e.g. Hawaii) have been well studied; however, the behavior of a plume near a subducting plate is still poorly understood and may in fact differ from the typical expected plume surfacing patterns. We investigate how three-dimensional subduction-driven flow relates to the deformation and dispersal of nearby upwelling plume material and the associated geochemical spatial patterns, with site-specific comparisons to the Tonga trench and Samoan plume system. Eighteen plume-trench laboratory experiments were conducted with varied combinations of subduction motions (down-dip, trench rollback, slab steepening and back-arc extension) and plume parameters (position and temperature.) A phenolic plate and glucose syrup, with a temperature dependent viscosity, are used to model the slab and upper mantle, respectively. Hydraulic pistons control longitudinal, translational and steepening motions of the slab as a simplified kinematic approach to mimic dynamic experiments. Results show that the subduction-induced flow dominates the upwelling strength of the plume, causing a significant portion of the plume head to subduct before reaching the melt zone. The remaining material is entrained around the slab edge into the mantle wedge by the trench rollback-induced flow. The proportion of subducted verses entrained material is predominantly dependent on plume location (relative to the trench) and thermal strength, with additional effects from back-arc extension and plate steepening.

  7. Three-Dimensional Finite Element Modeling of Thermomechanical Problems in Functionally Graded Hydroxyapatite/Titanium Plate

    Directory of Open Access Journals (Sweden)

    S. N. S. Jamaludin

    2014-01-01

    Full Text Available The composition of hydroxyapatite (HA as the ceramic phase and titanium (Ti as the metallic phase in HA/Ti functionally graded materials (FGMs shows an excellent combination of high biocompatibility and high mechanical properties in a structure. Because the gradation of these properties is one of the factors that affects the response of the functionally graded (FG plates, this paper is presented to show the domination of the grading parameter on the displacement and stress distribution of the plates. A three-dimensional (3D thermomechanical model of a 20-node brick quadratic element is used in the simulation of the thermoelastic behaviors of HA/Ti FG plates subjected to constant and functional thermal, mechanical, and thermomechanical loadings. The convergence properties of the present results are examined thoroughly in order to assess the accuracy of the theory applied and to compare them with the established research results. Instead of the grading parameter, this study reveals that the loading field distribution can be another factor that reflects the thermoelastic properties of the HA/Ti FG plates. The FG structure is found to be able to withstand the thermal stresses while preserving the high toughness properties and thus shows its ability to operate at high temperature.

  8. Three-dimensional modeling and quantitative analysis of gap junction distributions in cardiac tissue.

    Science.gov (United States)

    Lackey, Daniel P; Carruth, Eric D; Lasher, Richard A; Boenisch, Jan; Sachse, Frank B; Hitchcock, Robert W

    2011-11-01

    Gap junctions play a fundamental role in intercellular communication in cardiac tissue. Various types of heart disease including hypertrophy and ischemia are associated with alterations of the spatial arrangement of gap junctions. Previous studies applied two-dimensional optical and electron-microscopy to visualize gap junction arrangements. In normal cardiomyocytes, gap junctions were primarily found at cell ends, but can be found also in more central regions. In this study, we extended these approaches toward three-dimensional reconstruction of gap junction distributions based on high-resolution scanning confocal microscopy and image processing. We developed methods for quantitative characterization of gap junction distributions based on analysis of intensity profiles along the principal axes of myocytes. The analyses characterized gap junction polarization at cell ends and higher-order statistical image moments of intensity profiles. The methodology was tested in rat ventricular myocardium. Our analysis yielded novel quantitative data on gap junction distributions. In particular, the analysis demonstrated that the distributions exhibit significant variability with respect to polarization, skewness, and kurtosis. We suggest that this methodology provides a quantitative alternative to current approaches based on visual inspection, with applications in particular in characterization of engineered and diseased myocardium. Furthermore, we propose that these data provide improved input for computational modeling of cardiac conduction.

  9. Three-dimensional modeling of nematic liquid crystal micro-optics structures with complex patterned electrodes

    Science.gov (United States)

    Rong, Xing; Kang, Shengwu; Zhang, Xinyu; Ji, An; Xie, Changsheng; Zhang, Tianxu

    2012-11-01

    In this paper, a three-dimensional (3-D) relaxation method is used to model the dynamic response behavior of liquid crystal (LC) directors in LC micro-optics structures with complex patterned electrodes. The method is based on Frank- Oseen continuum elastic theory by using a vectorial representation. This method can deal with liquid crystal structures with arbitrary patterned electrodes, and it is quite computational stability. Different numerical results obtained according the method are as follows: (1) the nematic LC structures with complex patterned electrodes applied by a constant voltage signal, and (2) the nematic LC structures with different thickness of LC layer, and (3) the nematic LC structures with different signal voltage. The typical results include the distribution of LC directors in LC layers, the distribution of electric potential in LC layers, and the distribution of phase retardation. The results show that the method can be used to effectively predict the formation of disclination lines, which has a strong impact on the performance of LC micro-optics structures.

  10. Modeling disease using three dimensional cell culture: multi-lumen and inverted cyst phenotypes.

    Science.gov (United States)

    Monteleon, Christine L; D'Souza-Schorey, Crislyn

    2012-06-01

    Three-dimensional cell culture provides a unique system to investigate intrinsic mechanisms and micro environmental cues involved in the morphogenesis of epithelial glandular architectures. While this culture system allows insight into normal tissue development, it is also is readily amenable to manipulations that permit cellular modeling of various disease states. Here, we discuss a range of cellular and genetic alterations that result in two distinct cyst phenotypes, the multi-lumen cyst and the inverted cyst, both of which involve defects in cell polarity and lumen formation. Multi-lumen cyst formation results from disturbances in the mechanisms that regulate cell polarity, apical assembly, and the rate of lumen clearance. In the inverted cyst, the apical domain is oriented adjacent to the matrix, markedly affecting the morphogenic cues the matrix provides for cystogenesis. Both of these abnormal glandular phenotypes are highly reminiscent of histological patterns used to classify a number of diseases. A better understanding of the causes of multi-lumen and inverted cysts will provide insights into the origin and progression of epithelial diseases, potentially leading to the development of new therapies.

  11. Modeling and simulations of three-dimensional laser imaging based on space-variant structure

    Science.gov (United States)

    Cao, Jie; Hao, Qun; Peng, Yuxin; Cheng, Yang; Mu, Jiaxing; Wang, Peng; Yu, Haoyong

    2016-04-01

    A three-dimensional (3D) laser imaging system based on time of flight is proposed, based on the human retina structure. The system obtains 3D images with space-variant resolution, and we further establish mathematical models of the system and carried out simulative comparison between space-variant structure (SVS) and space-invariant structure (SIS). The system based on SVS produces significant improvements over traditional system based on SIS in the following aspects: (1) The system based on SVS uses less pixels than that based on SIS under the same field of view (FOV) and resolution. Therefore, this property is more suitable for uses in situations that require high speed and large volume data processing. (2) The system based on SVS has higher efficiency of utilization of photodiode array than that based on SIS. (3) 3D image based on SVS has the properties of rotation and scaling invariance. (4) The system based on SVS has higher echo power in outside ring of large photodiode array, which is more effective in detecting targets with low reflectance.

  12. Verification of three-dimensional neutron kinetics model of TRAP-KS code regarding reactivity variations

    Energy Technology Data Exchange (ETDEWEB)

    Uvakin, Maxim A.; Alekhin, Grigory V.; Bykov, Mikhail A.; Zaitsev, Sergei I. [EDO ' GIDROPRESS' , Moscow Region, Podolsk (Russian Federation)

    2016-09-15

    This work deals with TRAP-KS code verification. TRAP-KS is used for coupled neutron and thermo-hydraulic process calculations of VVER reactors. The three-dimensional neutron kinetics model enables consideration of space effects, which are produced by energy field and feedback parameters variations. This feature has to be investigated especially for asymmetrical multiplying variations of core properties, power fluctuations and strong local perturbation insertion. The presented work consists of three test definitions. First, an asymmetrical control rod (CR) ejection during power operation is defined. This process leads to fast reactivity insertion with short-time power spike. As second task xenon oscillations are considered. Here, small negative reactivity insertion leads to power decreasing and induces space oscillations of xenon concentration. In the late phase, these oscillations are suppressed by external actions. As last test, an international code comparison for a hypothetical main steam line break (V1000CT-2, task 2) was performed. This scenario is interesting for asymmetrical positive reactivity insertion by decreasing coolant temperature in the affected loop.

  13. BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models.

    Science.gov (United States)

    Bilgin, Cemal Cagatay; Fontenay, Gerald; Cheng, Qingsu; Chang, Hang; Han, Ju; Parvin, Bahram

    2016-01-01

    BioSig3D is a computational platform for high-content screening of three-dimensional (3D) cell culture models that are imaged in full 3D volume. It provides an end-to-end solution for designing high content screening assays, based on colony organization that is derived from segmentation of nuclei in each colony. BioSig3D also enables visualization of raw and processed 3D volumetric data for quality control, and integrates advanced bioinformatics analysis. The system consists of multiple computational and annotation modules that are coupled together with a strong use of controlled vocabularies to reduce ambiguities between different users. It is a web-based system that allows users to: design an experiment by defining experimental variables, upload a large set of volumetric images into the system, analyze and visualize the dataset, and either display computed indices as a heatmap, or phenotypic subtypes for heterogeneity analysis, or download computed indices for statistical analysis or integrative biology. BioSig3D has been used to profile baseline colony formations with two experiments: (i) morphogenesis of a panel of human mammary epithelial cell lines (HMEC), and (ii) heterogeneity in colony formation using an immortalized non-transformed cell line. These experiments reveal intrinsic growth properties of well-characterized cell lines that are routinely used for biological studies. BioSig3D is being released with seed datasets and video-based documentation.

  14. Proliferation behavior of E. coli in a three-dimensional in vitro tumor model.

    Science.gov (United States)

    Elliott, Nelita; Lee, Tae; You, Lingchong; Yuan, Fan

    2011-06-01

    Advances in genetic engineering of non-pathogenic Escherichia coli (E. coli) have made this organism an attractive candidate for gene delivery vehicle. However, proliferation and transport behaviors of E. coli in three-dimensional (3D) tumor environment are still unclear. To this end, we developed a novel microfluidics-based tumor model that permitted direct in situ visualization of E. coli in a 3D environment with densely packed tumor cells (B16.F10 or EMT6). The E. coli was engineered to co-express two proteins invasin and mCherry (inv(+)) so that they had the ability to enter mammalian cells and could be visualized via fluorescence microscopy. E. coli expressing mCherry alone (inv(-)) was used as the control counterpart. The inv(-) bacteria proliferated to a higher extent than inv(+) bacteria in both the 3D tumor model and a 2D monolayer culture model. Meanwhile, the proliferation appeared to be tumor cell type dependent since bacteria did not proliferate as well in the EMT6 model compared to the B16.F10 model. These differences in bacterial proliferation were likely to be caused by inhibitors secreted by tumor cells, as suggested by our data from the bacterial-tumor cell monolayer co-culture experiment. The bacterial proliferation provided a driving force for E. coli spreading in the 3D interstitial space of tumors. These findings are useful for researchers to develop novel strategies for improvement of bacteria-mediated oncolysis or gene delivery in cancer treatment.

  15. Automated recovery of three-dimensional models of plant shoots from multiple color images.

    Science.gov (United States)

    Pound, Michael P; French, Andrew P; Murchie, Erik H; Pridmore, Tony P

    2014-12-01

    Increased adoption of the systems approach to biological research has focused attention on the use of quantitative models of biological objects. This includes a need for realistic three-dimensional (3D) representations of plant shoots for quantification and modeling. Previous limitations in single-view or multiple-view stereo algorithms have led to a reliance on volumetric methods or expensive hardware to record plant structure. We present a fully automatic approach to image-based 3D plant reconstruction that can be achieved using a single low-cost camera. The reconstructed plants are represented as a series of small planar sections that together model the more complex architecture of the leaf surfaces. The boundary of each leaf patch is refined using the level-set method, optimizing the model based on image information, curvature constraints, and the position of neighboring surfaces. The reconstruction process makes few assumptions about the nature of the plant material being reconstructed and, as such, is applicable to a wide variety of plant species and topologies and can be extended to canopy-scale imaging. We demonstrate the effectiveness of our approach on data sets of wheat (Triticum aestivum) and rice (Oryza sativa) plants as well as a unique virtual data set that allows us to compute quantitative measures of reconstruction accuracy. The output is a 3D mesh structure that is suitable for modeling applications in a format that can be imported in the majority of 3D graphics and software packages. © 2014 American Society of Plant Biologists. All Rights Reserved.

  16. Three-dimensional hydrodynamic and water quality model for TMDL development of Lake Fuxian, China

    Institute of Scientific and Technical Information of China (English)

    Lei Zhao; Xiaoling Zhang; Yong Liu; Bin He; Xiang Zhu; Rui Zou; Yuanguan Zhu

    2012-01-01

    Lake Fuxian is the largest deep freshwater lake in China.Although its average water quality meets Class Ⅰ of the China National Water Quality Standard(CNWQS),i.e.,GB3838-2002,monitoring data indicate that the water quality approaches the Class Ⅱ threshold in some areas.Thus it is urgent to reduce the watershed load through the total maximum daily load(TMDL)program.A three-dimensional hydrodynamic and water quality model was developed for Lake Fuxian,simulating flow circulation and pollutant fate and transport.The model development process consists of several steps,including grid generation,initial and boundary condition configurations,and model calibration processes.The model accurately reproduced the observed water surface elevation,spatiotemporal variations in temperature,and total nitrogen(TN),total phosphorus(TP),and chemical oxygen demand(COD)concentrations,suggesting a reasonable numerical representation of the prototype system for further TMDL analyses.The TMDL was calculated using two interpretations of the water quality standards for Class Ⅰ of the CNWQS based on the maximum instantaneous surface and annual average surface water concentrations.Analysis of the first scenario indicated that the TN,TP and COD loads should be reduced by 66%,68% and 57%,respectively.Water quality was the highest priority; however,local economic development and cost feasibility for load reduction can pose significant issues.In the second interpretation,the model results showed that,under the existing conditions,the average water quality meets the Class Ⅰ standard and therefore load reduction is unnecessary.Future studies are needed to conduct risk and cost assessments for realistic decision-making.

  17. Three Dimensional P Wave Velocity Model for the Crust Containing Aftershocks of the Bhuj, India Earthquake

    Science.gov (United States)

    Powell, C. A.; Vlahovic, G.; Bodin, P.; Horton, S.

    2001-12-01

    A three-dimensional P wave velocity model has been constructed for the crust in the vicinity of the Mw=7.7 January 26th Bhuj, India earthquake using aftershock data obtained by CERI away teams. Aftershocks were recorded by 8 portable, digital K2 seismographs (the MAEC/ISTAR network) and by a continuously recording Guralp CMG40TD broad-band seismometer. Station spacing is roughly 30 km. The network was in place for 18 days and recorded ground motions from about 2000 aftershocks located within about 100 km of all stations. The 3-D velocity model is based upon an initial subset of 461 earthquakes with 2848 P wave arrivals. The initial 1-D velocity model was determined using VELEST and the 3-D model was determined using the nonlinear travel time tomography method of Benz et al. [1996]. Block size was set at 2 by 2 by 2 km. A 45% reduction in RMS travel time residuals was obtained after 10 iterations holding hypocenters fixed. We imaged velocity anomalies in the range -2 to 4%. Low velocities were found in the upper 6 km and the anomalies follow surface features such as the Rann of Kutch. High velocity features were imaged at depth and are associated with the aftershock hypocenters. High crustal velocities are present at depths exceeding 20 km with the exception of the crust below the Rann of Kutch. The imaged velocity anomaly pattern does not change when different starting models are used and when hypocenters are relocated using P wave arrivals only. The analysis will be extended to an expanded data set of 941 aftershocks.

  18. Accuracy of open-source software segmentation and paper-based printed three-dimensional models.

    Science.gov (United States)

    Szymor, Piotr; Kozakiewicz, Marcin; Olszewski, Raphael

    2016-02-01

    In this study, we aimed to verify the accuracy of models created with the help of open-source Slicer 3.6.3 software (Surgical Planning Lab, Harvard Medical School, Harvard University, Boston, MA, USA) and the Mcor Matrix 300 paper-based 3D printer. Our study focused on the accuracy of recreating the walls of the right orbit of a cadaveric skull. Cone beam computed tomography (CBCT) of the skull was performed (0.25-mm pixel size, 0.5-mm slice thickness). Acquired DICOM data were imported into Slicer 3.6.3 software, where segmentation was performed. A virtual model was created and saved as an .STL file and imported into Netfabb Studio professional 4.9.5 software. Three different virtual models were created by cutting the original file along three different planes (coronal, sagittal, and axial). All models were printed with a Selective Deposition Lamination Technology Matrix 300 3D printer using 80 gsm A4 paper. The models were printed so that their cutting plane was parallel to the paper sheets creating the model. Each model (coronal, sagittal, and axial) consisted of three separate parts (∼200 sheets of paper each) that were glued together to form a final model. The skull and created models were scanned with a three-dimensional (3D) optical scanner (Breuckmann smart SCAN) and were saved as .STL files. Comparisons of the orbital walls of the skull, the virtual model, and each of the three paper models were carried out with GOM Inspect 7.5SR1 software. Deviations measured between the models analysed were presented in the form of a colour-labelled map and covered with an evenly distributed network of points automatically generated by the software. An average of 804.43 ± 19.39 points for each measurement was created. Differences measured in each point were exported as a .csv file. The results were statistically analysed using Statistica 10, with statistical significance set at p 3D printer is comparable to those of other commonly used 3-dimensional printers and

  19. A three-dimensional human neural cell culture model of Alzheimer's disease.

    Science.gov (United States)

    Choi, Se Hoon; Kim, Young Hye; Hebisch, Matthias; Sliwinski, Christopher; Lee, Seungkyu; D'Avanzo, Carla; Chen, Hechao; Hooli, Basavaraj; Asselin, Caroline; Muffat, Julien; Klee, Justin B; Zhang, Can; Wainger, Brian J; Peitz, Michael; Kovacs, Dora M; Woolf, Clifford J; Wagner, Steven L; Tanzi, Rudolph E; Kim, Doo Yeon

    2014-11-13

    Alzheimer's disease is the most common form of dementia, characterized by two pathological hallmarks: amyloid-β plaques and neurofibrillary tangles. The amyloid hypothesis of Alzheimer's disease posits that the excessive accumulation of amyloid-β peptide leads to neurofibrillary tangles composed of aggregated hyperphosphorylated tau. However, to date, no single disease model has serially linked these two pathological events using human neuronal cells. Mouse models with familial Alzheimer's disease (FAD) mutations exhibit amyloid-β-induced synaptic and memory deficits but they do not fully recapitulate other key pathological events of Alzheimer's disease, including distinct neurofibrillary tangle pathology. Human neurons derived from Alzheimer's disease patients have shown elevated levels of toxic amyloid-β species and phosphorylated tau but did not demonstrate amyloid-β plaques or neurofibrillary tangles. Here we report that FAD mutations in β-amyloid precursor protein and presenilin 1 are able to induce robust extracellular deposition of amyloid-β, including amyloid-β plaques, in a human neural stem-cell-derived three-dimensional (3D) culture system. More importantly, the 3D-differentiated neuronal cells expressing FAD mutations exhibited high levels of detergent-resistant, silver-positive aggregates of phosphorylated tau in the soma and neurites, as well as filamentous tau, as detected by immunoelectron microscopy. Inhibition of amyloid-β generation with β- or γ-secretase inhibitors not only decreased amyloid-β pathology, but also attenuated tauopathy. We also found that glycogen synthase kinase 3 (GSK3) regulated amyloid-β-mediated tau phosphorylation. We have successfully recapitulated amyloid-β and tau pathology in a single 3D human neural cell culture system. Our unique strategy for recapitulating Alzheimer's disease pathology in a 3D neural cell culture model should also serve to facilitate the development of more precise human neural cell

  20. Three-dimensional modeling of fecal coliform in the Tidal Basin and Washington Channel, Washington, DC.

    Science.gov (United States)

    Bai, Sen; Lung, Wu-Seng

    2006-01-01

    Fecal coliform are widely used as bacterial indicator in the United States and around the world. Fecal coliform impaired water is highly possible to be polluted by pathogenic bacteria. The Tidal Basin and Washington Channel in Washington, DC are on the Total Maximum Daily Load (TMDL) list due to the high fecal coliform level. To support TMDL development, a three-dimensional numerical model of fecal coliform was developed using the EFDC framework. The model calculates the transport of fecal coliform under the influences of flap gate operations and tidal elevation. The original EFDC code was modified to calculate the die-off of fecal coliform under the impact of temperature and solar radiation intensity. The watershed contribution is expressed as storm water inflow and the load carried by the runoff. Model results show that fecal coliform vary strongly in space in both the Tidal Basin and Washington Channel. The storm water only impacts a small area around the storm water outfall in the Tidal Basin and the impacts are negligible in the Washington Channel due to dilution. The water from the Potomac River may affect the fecal coliform level in the area close to the flap gate in the Tidal Basin. The fecal coliform level in the Washington Channel is mainly controlled by the fecal coliform level in the Anacostia River, which is located at the open boundary of the Washington Channel. The potential sediment layer storage of fecal coliform was analyzed and it was found that the sediment layer fecal coliform level could be much higher than the water column fecal coliform level and becomes a secondary source under high bottom shear stress condition. The developed model built solid connection of fecal coliform source and concentration in the water column and has been used to develop TMDL.

  1. SU-E-T-754: Three-Dimensional Patient Modeling Using Photogrammetry for Collision Avoidance

    Energy Technology Data Exchange (ETDEWEB)

    Popple, R; Cardan, R [Univ Alabama Birmingham, Birmingham, AL (United States)

    2015-06-15

    Purpose: To evaluate photogrammetry for creating a three-dimensional patient model. Methods: A mannequin was configured on the couch of a CT scanner to simulate a patient setup using an indexed positioning device. A CT fiducial was placed on the indexed CT table-overlay at the reference index position. Two dimensional photogrammetry targets were placed on the table in known positions. A digital SLR camera was used to obtain 27 images from different positions around the CT table. The images were imported into a commercial photogrammetry package and a 3D model constructed. Each photogrammetry target was identified on 2 to 5 images. The CT DICOM metadata and the position of the CT fiducial were used to calculate the coordinates of the photogrammetry targets in the CT image frame of reference. The coordinates were transferred to the photogrammetry software to orient the 3D model. The mannequin setup was transferred to the treatment couch of a linear accelerator and positioned at isocenter using in-room lasers. The treatment couch coordinates were noted and compared with prediction. The collision free regions were measured over the full range of gantry and table motion and were compared with predictions obtained using a general purpose polygon interference algorithm. Results: The reconstructed 3D model consisted of 180000 triangles. The difference between the predicted and measured couch positions were 5 mm, 1 mm, and 1 mm for longitudinal, lateral, and vertical, respectively. The collision prediction tested 64620 gantry table combinations in 11.1 seconds. The accuracy was 96.5%, with false positive and negative results occurring at the boundaries of the collision space. Conclusion: Photogrammetry can be used as a tool for collision avoidance during treatment planning. The results indicate that a buffer zone is necessary to avoid false negatives at the boundary of the collision-free zone. Testing with human patients is underway. Research partially supported by a grant

  2. Pakal: A Three-dimensional Model to Solve the Radiative Transfer Equation

    Science.gov (United States)

    De la Luz, Victor; Lara, Alejandro; Mendoza-Torres, J. E.; Selhorst, Caius L.

    2010-06-01

    We present a new numerical model called "Pakal" intended to solve the radiative transfer equation in a three-dimensional (3D) geometry, using the approximation for a locally plane-parallel atmosphere. Pakal uses pre-calculated radial profiles of density and temperature (based on hydrostatic, hydrodynamic, or MHD models) to compute the emission from 3D source structures with high spatial resolution. Then, Pakal solves the radiative transfer equation in a set of (3D) ray paths, going from the source to the observer. Pakal uses a new algorithm to compute the radiative transfer equation by using an intelligent system consisting of three structures: a cellular automaton; an expert system; and a program coordinator. The code outputs can be either two-dimensional maps or one-dimensional profiles, which reproduce the observations with high accuracy, giving detailed physical information about the environment where the radiation was generated and/or transmitted. We present the model applied to a 3D solar radial geometry, assuming a locally plane-parallel atmosphere, and thermal free-free radio emission from hydrogen-helium gas in thermodynamic equilibrium. We also present the convergence test of the code. We computed the synthetic spectrum of the centimetric-millimetric solar emission and found better agreement with observations (up to 104 K at 20 GHz) than previous models reported in the literature. The stability and convergence test show the high accuracy of the code. Finally, Pakal can improve the integration time by up to an order of magnitude compared against linear integration codes.

  3. Three-Dimensional Printing of a Hemorrhagic Cervical Cancer Model for Postgraduate Gynecological Training

    Science.gov (United States)

    Ryan, Stephen; Doucet, Gregory; Murphy, Deanna; Turner, Jacqueline

    2017-01-01

    Introduction A realistic hemorrhagic cervical cancer model was three-dimensionally (3D) printed and used in a postgraduate medical simulation training session. Materials and methods Computer-assisted design (CAD) software was the platform of choice to create and refine the cervical model. Once the prototype was finalized, another software allowed for the addition of a neoplastic mass, which included openings for bleeding from the neoplasm and cervical os. 3D printing was done using two desktop printers and three different materials. An emergency medicine simulation case was presented to obstetrics and gynecology residents who were at varying stages of their training. The scenario included history taking and physical examination of a standardized patient. This was a hybrid simulation; a synthetic pelvic task trainer that allowed the placement of the cervical model was connected to the standardized patient. The task trainer was placed under a drape and appeared to extend from the standardized patient’s body. At various points in the simulation, the standardized patient controlled the cervical bleeding through a peripheral venous line. Feedback forms were completed, and the models were discussed and evaluated with staff. Results A final cervical model was created and successfully printed. Overall, the models were reported to be similar to a real cervix. The models bled well. Most models were not sutured during the scenarios, but overall, the value of the printed cervical models was reported to be high. Discussion The models were well received, but it was suggested that more colors be integrated into the cervix in order to better emphasize the intended pathology. The model design requires further improvement, such as the addition of a locking mechanism, in order to ensure that the cervix stays inside the task trainer throughout the simulation. Adjustments to the simulated blood product would allow the bleeding to flow more vigorously. Additionally

  4. Three-dimensional modeling using x-ray shape-from-silhouette.

    Science.gov (United States)

    Simioni, Emanuele; Ratti, Filippo; Calliari, Irene; Poletto, Luca

    2011-07-01

    We present the application of the shape-from-silhouette technique to reconstruct the three-dimensional profile of ancient handworks from their x-ray absorption images. The acquisition technique is similar to tomography, since the images are taken all around the object while it is rotated. Some reference points are placed on a small and light structure corotating with the object, and are acquired on the images for calibration and registration. The reconstruction algorithm gives finally the three-dimensional appearance of the handwork. We present the analysis of a bronze pendant of VI-VII century B.C. (Venetic area, Italy) completely hidden by corrosion products. The three-dimensional reconstruction shows that the pendant is a very elaborated piece, with two embraced figures that were completely invisible at the excavation.

  5. Three-dimensional modeling and simulation of asphalt concrete mixtures based on X-ray CT microstructure images

    Directory of Open Access Journals (Sweden)

    Hainian Wang

    2014-02-01

    Full Text Available X-ray CT (computed tomography was used to scan asphalt mixture specimen to obtain high resolution continuous cross-section images and the meso-structure. According to the theory of three-dimensional (3D reconstruction, the 3D reconstruction algorithm was investigated in this paper. The key to the reconstruction technique is the acquisition of the voxel positions and the relationship between the pixel element and node. Three-dimensional numerical model of asphalt mixture specimen was created by a self-developed program. A splitting test was conducted to predict the stress distributions of the asphalt mixture and verify the rationality of the 3D model.

  6. Criteria for anatomical compatibility of the total artificial heart: computerized three-dimensional modeling of the cardiovascular anatomy.

    Science.gov (United States)

    Chatel, D; Martin-Bouyer, Y; Vicaut, E; Bouchoucha, H; Achard, F; Sablayrolles, J L; Carpentier, A

    1993-12-01

    A quantitative study of cardiovascular anatomy was performed by obtaining three-dimensional reconstructions from regular computed tomography scan images in 15 patients, all candidates for heart transplantation. Volumetric estimates of the cardiovascular structures were obtained from these three-dimensional reconstructions using data directly related to total artificial heart (TAH) implantations. By using computerized three-dimensional modeling of these structures, reproducible measurements of the parameters defining the shape and the anatomical connections of the intrathoracic space available for TAH implantation could be derived. The results are intended to be used for both technical and clinical applications such as computer-assisted drawing of the pericardial cavity and the anatomical connections (useful for improving the design of TAH) and combined statistical calculations (multiple regressions, cluster algorithm) of the measurement results, which will then enable the best selection to be made among two or three TAH models for each patient.

  7. Variational formulation and stability analysis of a three dimensional superelastic model for shape memory alloys

    Science.gov (United States)

    Alessi, Roberto; Pham, Kim

    2016-02-01

    This paper presents a variational framework for the three-dimensional macroscopic modelling of superelastic shape memory alloys in an isothermal setting. Phase transformation is accounted through a unique second order tensorial internal variable, acting as the transformation strain. Postulating the total strain energy density as the sum of a free energy and a dissipated energy, the model depends on two material scalar functions of the norm of the transformation strain and a material scalar constant. Appropriate calibration of these material functions allows to render a wide range of constitutive behaviours including stress-softening and stress-hardening. The quasi-static evolution problem of a domain is formulated in terms of two physical principles based on the total energy of the system: a stability criterion, which selects the local minima of the total energy, and an energy balance condition, which ensures the consistency of the evolution of the total energy with respect to the external loadings. The local phase transformation laws in terms of Kuhn-Tucker relations are deduced from the first-order stability condition and the energy balance condition. The response of the model is illustrated with a numerical traction-torsion test performed on a thin-walled cylinder. Evolutions of homogeneous states are given for proportional and non-proportional loadings. Influence of the stress-hardening/softening properties on the evolution of the transformation domain is emphasized. Finally, in view of an identification process, the issue of stability of homogeneous states in a multi-dimensional setting is answered based on the study of second-order derivative of the total energy. Explicit necessary and sufficient conditions of stability are provided.

  8. Characteristics of Hydraulic Shock Waves in an Inclined Chute Contraction by Using Three Dimensional Numerical Model

    Science.gov (United States)

    Hsiao, Kai-Wen; Hsu, Yu-Chao; Jan, Chyan-Deng; Su, Yu-Wen

    2016-04-01

    The inclined rectangular chute construction is a common structure used in hydraulic engineering for typical reasons such as the increase of bottom slope, the transition from side channel intakes to tunnel spillways, the drainage construction, and the reduction of chute width due to bridges, flood diversion structures or irrigation systems. The converging vertical sidewalls of a chute contraction deflect the supercritical flow to form hydraulic shock waves. Hydraulic shock waves have narrow and locally extreme wavy surfaces, which commonly results in the requirement of higher height of sidewalls. Therefore, predicting the possible height and position of maximum hydraulic shock wave are necessary to design the required height of sidewalls to prevent flow overtopping. In this study, we used a three-dimensional computation fluid dynamics model (i.e., FLOW-3D) to simulate the characteristics of hydraulic shock waves in an inclined chute contraction. For this purpose, the parameters of simulated hydraulic shock wave, such as the shock angle, maximum shock wave height and maximum shock wave position in various conditions are compared with those calculated by the empirical relations obtained from literatures. We showed that the simulated results are extremely close to the experimental results. The numerical results validated the applicability of these empirical relations and extend their applicability to higher approach Froude numbers from 3.51 to 7.27. Furthermore, we also applied the Yuan-Shan-Tsu flood diversion channel under 200-year peak flow condition to FLOW-3D model to simulate the hydraulic shock waves and validate the effect of the installation of a diversion pier in the channel on promoting the stability of flow fluid. The results revealed that a diversion pier installed in the Yuan-Shan-Tsu flood diversion channel is helpful for improving the stability of flow field. In summary, this study demonstrates that FLOW-3D model can be used to simulate the

  9. Modelling in vivo skeletal muscle ageing in vitro using three-dimensional bioengineered constructs.

    Science.gov (United States)

    Sharples, Adam P; Player, Darren J; Martin, Neil R W; Mudera, Vivek; Stewart, Claire E; Lewis, Mark P

    2012-12-01

    Degeneration of skeletal muscle (SkM) with age (sarcopenia) is a major contributor to functional decline, morbidity and mortality. Methodological implications often make it difficult to embark on interventions in already frail and diseased elderly individuals. Using in vitro three-dimensional (3D) bioengineered skeletal muscle constructs that model aged phenotypes and incorporate a representative extracellular matrix (collagen), are under tension, and display morphological and transcript expression of mature skeletal muscle may more accurately characterize the SkM niche. Furthermore, an in vitro model would provide greater experimental manipulation with regard to gene, pharmacological and exercise (mechanical stretch/electrical stimulation) therapies and thus strategies for combating muscle wasting with age. The present study utilized multiple population-doubled (MPD) murine myoblasts compared with parental controls (CON), previously shown to have an aged phenotype in monolayer cultures (Sharples et al., 2011), seeded into 3D type I collagen matrices under uniaxial tension. 3D bioengineered constructs incorporating MPD cells had reduced myotube size and diameter vs. CON constructs. MPD constructs were characterized by reduced peak force development over 24 h after cell seeding, reduced transcript expression of remodelling matrix metalloproteinases, MMP2 and MMP9, with reduced differentiation/hypertrophic potential shown by reduced IGF-I, IGF-IR, IGF-IEa, MGF mRNA. Increased IGFBP2 and myostatin in MPD vs. CON constructs also suggested impaired differentiation/reduced regenerative potential. Overall, 3D bioengineered skeletal muscle constructs represent an in vitro model of the in vivo cell niche with MPD constructs displaying similar characteristics to ageing/atrophied muscle in vivo, thus potentially providing a future test bed for therapeutic interventions to contest muscle degeneration with age. © 2012 The Authors. Aging Cell © 2012 Blackwell Publishing Ltd

  10. Three-dimensional inspiratory flow in a double bifurcation airway model

    Science.gov (United States)

    Jalal, Sahar; Nemes, Andras; Van de Moortele, Tristan; Schmitter, Sebastian; Coletti, Filippo

    2016-09-01

    The flow in an idealized airway model is investigated for the steady inhalation case. The geometry consists of a symmetric planar double bifurcation that reflects the anatomical proportions of the human bronchial tree, and a wide range of physiologically relevant Reynolds numbers ( Re = 100-5000) is considered. Using magnetic resonance velocimetry, we analyze the three-dimensional fields of velocity and vorticity, along with flow descriptors that characterize the longitudinal and lateral dispersion. In agreement with previous studies, the symmetry of the flow partitioning is broken even at the lower Reynolds numbers, and at the second bifurcation, the fluid favors the medial branches over the lateral ones. This trend reaches a plateau around Re = 2000, above which the turbulent inflow results in smoothed mean velocity gradients. This also reduces the streamwise momentum flux, which is a measure of the longitudinal dispersion by the mean flow. The classic Dean-type counter-rotating vortices are observed in the first-generation daughter branches as a result of the local curvature. In the granddaughter branches, however, the secondary flows are determined by the local curvature only for the lower flow regimes ( Re ≤ 250), in which case the classic Dean mechanism prevails. At higher flow regimes, the field is instead dominated by streamwise vortices extending from the daughter into the medial granddaughter branches, where they rotate in the opposite direction with respect to Dean vortices. Circulation and secondary flow intensity show a similar trend as the momentum flux, increasing with Reynolds number up to Re = 2000 and then dropping due to turbulent dissipation of vorticity. The streamwise vortices interact both with each other and with the airway walls, and for Re > 500 they can become stronger in the medial granddaughter than in the upstream daughter branches. With respect to realistic airway models, the idealized geometry produces weaker secondary flows

  11. Monitoring Prostate Tumor Growth in an Orthotopic Mouse Model Using Three-Dimensional Ultrasound Imaging Technique

    Directory of Open Access Journals (Sweden)

    Jie Ni

    2016-02-01

    Full Text Available Prostate cancer (CaP is the most commonly diagnosed and the second leading cause of death from cancer in males in USA. Prostate orthotopic mouse model has been widely used to study human CaP in preclinical settings. Measurement of changes in tumor size obtained from noninvasive diagnostic images is a standard method for monitoring responses to anticancer modalities. This article reports for the first time the usage of a three-dimensional (3D ultrasound system equipped with photoacoustic (PA imaging in monitoring longitudinal prostate tumor growth in a PC-3 orthotopic NODSCID mouse model (n = 8. Two-dimensional and 3D modes of ultrasound show great ability in accurately depicting the size and shape of prostate tumors. PA function on two-dimensional and 3D images showed average oxygen saturation and average hemoglobin concentration of the tumor. Results showed a good fit in representative exponential tumor growth curves (n = 3; r2 = 0.948, 0.955, and 0.953, respectively and a good correlation of tumor volume measurements performed in vivo with autopsy (n = 8, r = 0.95, P < .001. The application of 3D ultrasound imaging proved to be a useful imaging modality in monitoring tumor growth in an orthotopic mouse model, with advantages such as high contrast, uncomplicated protocols, economical equipment, and nonharmfulness to animals. PA mode also enabled display of blood oxygenation surrounding the tumor and tumor vasculature and angiogenesis, making 3D ultrasound imaging an ideal tool for preclinical cancer research.

  12. Three-dimensional perfused human in vitro model of non-alcoholic fatty liver disease

    Science.gov (United States)

    Kostrzewski, Tomasz; Cornforth, Terri; Snow, Sophie A; Ouro-Gnao, Larissa; Rowe, Cliff; Large, Emma M; Hughes, David J

    2017-01-01

    AIM To develop a human in vitro model of non-alcoholic fatty liver disease (NAFLD), utilising primary hepatocytes cultured in a three-dimensional (3D) perfused platform. METHODS Fat and lean culture media were developed to directly investigate the effects of fat loading on primary hepatocytes cultured in a 3D perfused culture system. Oil Red O staining was used to measure fat loading in the hepatocytes and the consumption of free fatty acids (FFA) from culture medium was monitored. Hepatic functions, gene expression profiles and adipokine release were compared for cells cultured in fat and lean conditions. To determine if fat loading in the system could be modulated hepatocytes were treated with known anti-steatotic compounds. RESULTS Hepatocytes cultured in fat medium were found to accumulate three times more fat than lean cells and fat uptake was continuous over a 14-d culture. Fat loading of hepatocytes did not cause any hepatotoxicity and significantly increased albumin production. Numerous adipokines were expressed by fatty cells and genes associated with NAFLD and liver disease were upregulated including: Insulin-like growth factor-binding protein 1, fatty acid-binding protein 3 and CYP7A1. The metabolic activity of hepatocytes cultured in fatty conditions was found to be impaired and the activities of CYP3A4 and CYP2C9 were significantly reduced, similar to observations made in NAFLD patients. The utility of the model for drug screening was demonstrated by measuring the effects of known anti-steatotic compounds. Hepatocytes, cultured under fatty conditions and treated with metformin, had a reduced cellular fat content compared to untreated controls and consumed less FFA from cell culture medium. CONCLUSION The 3D in vitro NAFLD model recapitulates many features of clinical NAFLD and is an ideal tool for analysing the efficacy of anti-steatotic compounds. PMID:28127194

  13. Development of a Three Dimensional Multiscale Computational Model of the Human Epidermis

    Science.gov (United States)

    Adra, Salem; Sun, Tao; MacNeil, Sheila; Holcombe, Mike; Smallwood, Rod

    2010-01-01

    Transforming Growth Factor (TGF-β1) is a member of the TGF-beta superfamily ligand-receptor network. and plays a crucial role in tissue regeneration. The extensive in vitro and in vivo experimental literature describing its actions nevertheless describe an apparent paradox in that during re-epithelialisation it acts as proliferation inhibitor for keratinocytes. The majority of biological models focus on certain aspects of TGF-β1 behaviour and no one model provides a comprehensive story of this regulatory factor's action. Accordingly our aim was to develop a computational model to act as a complementary approach to improve our understanding of TGF-β1. In our previous study, an agent-based model of keratinocyte colony formation in 2D culture was developed. In this study this model was extensively developed into a three dimensional multiscale model of the human epidermis which is comprised of three interacting and integrated layers: (1) an agent-based model which captures the biological rules governing the cells in the human epidermis at the cellular level and includes the rules for injury induced emergent behaviours, (2) a COmplex PAthway SImulator (COPASI) model which simulates the expression and signalling of TGF-β1 at the sub-cellular level and (3) a mechanical layer embodied by a numerical physical solver responsible for resolving the forces exerted between cells at the multi-cellular level. The integrated model was initially validated by using it to grow a piece of virtual epidermis in 3D and comparing the in virtuo simulations of keratinocyte behaviour and of TGF-β1 signalling with the extensive research literature describing this key regulatory protein. This research reinforces the idea that computational modelling can be an effective additional tool to aid our understanding of complex systems. In the accompanying paper the model is used to explore hypotheses of the functions of TGF-β1 at the cellular and subcellular level on different keratinocyte

  14. Development of a three dimensional multiscale computational model of the human epidermis.

    Directory of Open Access Journals (Sweden)

    Salem Adra

    Full Text Available Transforming Growth Factor (TGF-beta1 is a member of the TGF-beta superfamily ligand-receptor network. and plays a crucial role in tissue regeneration. The extensive in vitro and in vivo experimental literature describing its actions nevertheless describe an apparent paradox in that during re-epithelialisation it acts as proliferation inhibitor for keratinocytes. The majority of biological models focus on certain aspects of TGF-beta1 behaviour and no one model provides a comprehensive story of this regulatory factor's action. Accordingly our aim was to develop a computational model to act as a complementary approach to improve our understanding of TGF-beta1. In our previous study, an agent-based model of keratinocyte colony formation in 2D culture was developed. In this study this model was extensively developed into a three dimensional multiscale model of the human epidermis which is comprised of three interacting and integrated layers: (1 an agent-based model which captures the biological rules governing the cells in the human epidermis at the cellular level and includes the rules for injury induced emergent behaviours, (2 a COmplex PAthway SImulator (COPASI model which simulates the expression and signalling of TGF-beta1 at the sub-cellular level and (3 a mechanical layer embodied by a numerical physical solver responsible for resolving the forces exerted between cells at the multi-cellular level. The integrated model was initially validated by using it to grow a piece of virtual epidermis in 3D and comparing the in virtuo simulations of keratinocyte behaviour and of TGF-beta1 signalling with the extensive research literature describing this key regulatory protein. This research reinforces the idea that computational modelling can be an effective additional tool to aid our understanding of complex systems. In the accompanying paper the model is used to explore hypotheses of the functions of TGF-beta1 at the cellular and subcellular level on

  15. Three-dimensional hydrogel cell culture systems for modeling neural tissue

    Science.gov (United States)

    Frampton, John

    Two-dimensional (2-D) neural cell culture systems have served as physiological models for understanding the cellular and molecular events that underlie responses to physical and chemical stimuli, control sensory and motor function, and lead to the development of neurological diseases. However, the development of three-dimensional (3-D) cell culture systems will be essential for the advancement of experimental research in a variety of fields including tissue engineering, chemical transport and delivery, cell growth, and cell-cell communication. In 3-D cell culture, cells are provided with an environment similar to tissue, in which they are surrounded on all sides by other cells, structural molecules and adhesion ligands. Cells grown in 3-D culture systems display morphologies and functions more similar to those observed in vivo, and can be cultured in such a way as to recapitulate the structural organization and biological properties of tissue. This thesis describes a hydrogel-based culture system, capable of supporting the growth and function of several neural cell types in 3-D. Alginate hydrogels were characterized in terms of their biomechanical and biochemical properties and were functionalized by covalent attachment of whole proteins and peptide epitopes. Methods were developed for rapid cross-linking of alginate hydrogels, thus permitting the incorporation of cells into 3-D scaffolds without adversely affecting cell viability or function. A variety of neural cell types were tested including astrocytes, microglia, and neurons. Cells remained viable and functional for longer than two weeks in culture and displayed process outgrowth in 3-D. Cell constructs were created that varied in cell density, type and organization, providing experimental flexibility for studying cell interactions and behavior. In one set of experiments, 3-D glial-endothelial cell co-cultures were used to model blood-brain barrier (BBB) structure and function. This co-culture system was

  16. Indications and limitations of three-dimensional models in cranio-maxillofacial surgery.

    Science.gov (United States)

    Santler, G; Kärcher, H; Ruda, C

    1998-02-01

    Anatomical, life-like, three-dimensional (3D) models have a definite place in cranio-maxillofacial surgery. Our experience with 541 computer tomography (CT)-based 3D models employed in aiding corrective surgery of tumours, dysgnathia, traumatology, alveolar atrophy, congenital malformation and asymmetrical malformations in our department is discussed. From July 1988 to February 1997, 3D models of 346 patients were used. Most of these were produced at our clinic. The indications, advantages and limitations of 3D-models were analysed retrospectively. In the case of congenital malformations (n = 60), models facilitated precise diagnosis of the skeletal deformity. Simulation surgery allowed prediction and solution of intraoperative problems prior to the actual patient operation. Size, shape and localization of defects caused by trauma (n = 64), osteoradionecrosis (n = 17) or osteomyelitis (n = 2) determined the choice of transplant donor site. In patients suffering from dysgnathia (n = 144), 3D models enabled exact positioning of the jaws. Precise planning could only be accomplished with the help of 3D models, especially for asymmetrical malformations (n = 12). In cases of severe atrophy of the alveolar crest (n = 45), exact measurement of the bone was possible and facilitated the decision as to whether dental implants, bone transplants or a combination of these were indicated. The positioning of transplants and implants was carried out in the ideal relation to the opposite jaw. In tumour patients (n = 186), it is not always possible to identify the tumour borders precisely on the CT scan or 3D model. Therefore, the defect was assumed to be bigger, a longer bridging plate constructed and this measurement corrected according to the intraoperative situation. The advantage of the 3D models consisted of an accurate representation of anatomical structures, bone or soft tissue. This allows precise preoperative diagnosis, operation planning and model operations. Due to this

  17. Evaluation of a three-dimensional chemical transport model (PMCAMx) in the European domain during the EUCAARI May 2008 campaign

    NARCIS (Netherlands)

    Fountoukis, C.; Racherla, P.N.; Denier Van Der Gon, H.A.C.; Polymeneas, P.; Haralabidis, P.E.; Wiedensohler, A.; Pilinis, C.; Pandis, S.N.

    2011-01-01

    PMCAMx-2008, a detailed three dimensional chemical transport model (CTM), was applied to Europe to simulate the mass concentration and chemical composition of particulate matter (PM) during May 2008. The model includes a state-of-the-art organic aerosol module which is based on the volatility basis

  18. Three-dimensional microscale modelling of CO2 transport and light propagation in tomato leaves enlightens photosynthesis

    NARCIS (Netherlands)

    Ho, Q.T.; Berghuijs, H.N.C.; Watté, R.; Verboven, P.; Herremans, E.; Yin, X.; Retta, M.A.; Aernouts, B.; Saeys, W.; Helfen, L.; Farquhar, G.D.; Struik, P.C.; Nicolai, B.

    2016-01-01

    We present a combined three-dimensional (3-D) model of light propagation, CO2 diffusion and photosynthesis in tomato (Solanum lycopersicum L.) leaves. The model incorporates a geometrical representation of the actual leaf microstructure that we obtained with synchrotron radiation X-ray laminography,

  19. Evaluation of a three-dimensional chemical transport model (PMCAMx) in the European domain during the EUCAARI May 2008 campaign

    NARCIS (Netherlands)

    Fountoukis, C.; Racherla, P.N.; Denier Van Der Gon, H.A.C.; Polymeneas, P.; Haralabidis, P.E.; Wiedensohler, A.; Pilinis, C.; Pandis, S.N.

    2011-01-01

    PMCAMx-2008, a detailed three dimensional chemical transport model (CTM), was applied to Europe to simulate the mass concentration and chemical composition of particulate matter (PM) during May 2008. The model includes a state-of-the-art organic aerosol module which is based on the volatility basis

  20. Three-dimensional (3-D) model utilization for fracture reconstruction in oral and maxillofacial surgery: A case report

    Science.gov (United States)

    Damayanti, Ista; Lilies, Latief, Benny S.

    2017-02-01

    Three-dimensional (3-D) printing has been identified as an innovative manufacturing technology of functional parts. The 3-D model was produced based on CT-Scan using Osyrix software, where automatic segmentation was performed and convert into STL format. This STL format was then ready to be produced physically, layer-by-layer to create 3-D model.

  1. Mathematical structure of the three-dimensional (3D) Ising model

    Institute of Scientific and Technical Information of China (English)

    Zhang Zhi-Dong

    2013-01-01

    An overview of the mathematical structure of the three-dimensional (3D) Ising model is given from the points of view of topology,algebra,and geometry.By analyzing the relationships among transfer matrices of the 3D Ising model,Reidemeister moves in the knot theory,Yang-Baxter and tetrahedron equations,the following facts are illustrated for the 3D Ising model.1) The complex quaternion basis constructed for the 3D Ising model naturally represents the rotation in a (3+1)-dimensional space-time as a relativistic quantum statistical mechanics model,which is consistent with the 4-fold integrand of the partition function obtained by taking the time average.2) A unitary transformation with a matrix that is a spin representation in 2n·l·o-space corresponds to a rotation in 2n· l· o-space,which serves to smooth all the crossings in the transfer matrices and contributes the non-trivial topological part of the partition function of the 3D Ising model.3)A tetrahedron relationship would ensure the commutativity of the transfer matrices and the integrability of the 3D Ising model,and its existence is guaranteed by the Jordan algebra and the Jordan-von Neumann-Wigner procedures.4) The unitary transformation for smoothing the crossings in the transfer matrices changes the wave functions by complex phases Φx,Φy,and Φz.The relationship with quantum field and gauge theories and the physical significance of the weight factors are discussed in detail.The conjectured exact solution is compared with numerical results,and the singularities at/near infinite temperature are inspected.The analyticity in β =1/(kBT) of both the hard-core and the Ising models has been proved only forβ > 0,not for β =0.Thus the high-temperature series cannot serve as a standard for judging a putative exact solution of the 3D Ising model.

  2. Three-dimensional (3D) structure model and its parameters for poplar shelterbelts

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    The spatial functions of surface area density(vegetative surface area per unit canopy volume) and cubic density(vegetative volume per unit canopy volume) have been used as two three-dimensional(3D) structural descriptors for shelterbelt.The functions were defined by models as a general case.However,sub-models such as surface area,volume,and corresponding distributions were not explicitly defined for poplar trees,which are a dominant woody species in shelterbelts all over China,and this limits applications of the models in China and elsewhere.In order to define and develop these sub-models for shelterbelts,poplar trees were destructively sampled from multiple-row shelterbelts and then were measured for their surface area and volume.Using these measurements,we estimated parameters to define their equations explicitly.Based on the architecture and planting patterns of trees in shelterbelts,the distribution of the surface areas and volumes vertically and across the width for different tree heights were constructed for the three components of trunks,branches and leaves.Incorporating the defined equations into the models,we described the 3D structure of a multiple-row poplar shelterbelt.The results showed that,the spatial change in magnitude of surface area density(0.215-10.131 m2/m3) or cubic density(0.00007-0.04667 m3/m3) in shelterbelts is large and their distributions are not uniform.The assumption for boundary-layer flow modeling efforts that the 3D distribution of shelterbelt structure was uniform is not the case in field.The 3D structure model not only can be used to model the flow field as influenced by each tree component,but also can express the entire aerodynamic characteristics of a shelterbelt.The methodologies and equations that are developed in this study can be applied to estimate the 3D structure of a shelterbelt with a design similar to our studied poplar shelterbelts in terms of species composition and planting patterns.The fitted models can be used to

  3. STRATAQ: A three-dimensional Chemical Transport Model of the stratosphere

    Directory of Open Access Journals (Sweden)

    B. Grassi

    Full Text Available A three-dimensional (3-D Chemical Transport Model (CTM of the stratosphere has been developed and used for a test study of the evolution of chemical species in the arctic lower stratosphere during winter 1996/97. This particular winter has been chosen for testing the model’s capabilities for its remarkable dynamical situation (very cold and strong polar vortex along with the availability of sparse chlorine, HNO3 and O3 data, showing also very low O3 values in late March/April. Due to those unusual features, the winter 1996/97 can be considered an excellent example of the impact of both dynamics and heterogeneous reactions on the chemistry of the stratosphere. Model integration has been performed from January to March 1997 and the resulting long-lived and short-lived tracer fields compared with available measurements. The model includes a detailed gas phase chemical scheme and a parameterization of the heterogeneous reactions occurring on liquid aerosol and polar stratospheric cloud (PSC surfaces. The transport is calculated using a semi-lagrangian flux scheme, forced by meteorological analyses. In such form, the STRATAQ CTM model is suitable for short-term integrations to study transport and chemical evolution related to "real" meteorological situations. Model simulation during the chosen winter shows intense PSC formation, with noticeable local HNO3 capture by PSCs, and the activation of vortex air leading to chlorine production and subsequent O3 destruction. The resulting model fields show generally good agreement with satellite data (MLS and TOMS, although the available observations, due to their limited number and time/space sparse nature, are not enough to effectively constraint the model. In particular, the model seems to perform well in reproducing the rapid processing of air inside the polar vortex on PSC converting reservoir species in active chlorine. In addition, it

  4. Assembly of a three-dimensional multitype bronchiole coculture model using magnetic levitation.

    Science.gov (United States)

    Tseng, Hubert; Gage, Jacob A; Raphael, Robert M; Moore, Robert H; Killian, Thomas C; Grande-Allen, K Jane; Souza, Glauco R

    2013-09-01

    A longstanding goal in biomedical research has been to create organotypic cocultures that faithfully represent native tissue environments. There is presently great interest in representative culture models of the lung, which is a particularly challenging tissue to recreate in vitro. This study used magnetic levitation in conjunction with magnetic nanoparticles as a means of creating an organized three-dimensional (3D) coculture of the bronchiole that sequentially layers cells in a manner similar to native tissue architecture. The 3D coculture model was assembled from four human cell types in the bronchiole: endothelial cells, smooth muscle cells (SMCs), fibroblasts, and epithelial cells (EpiCs). This study represents the first effort to combine these particular cell types into an organized bronchiole coculture. These cell layers were first cultured in 3D by magnetic levitation, and then manipulated into contact with a custom-made magnetic pen, and again cultured for 48 h. Hematoxylin and eosin staining of the resulting coculture showed four distinct layers within the 3D coculture. Immunohistochemistry confirmed the phenotype of each of the four cell types and showed organized extracellular matrix formation, particularly, with collagen type I. Positive stains for CD31, von Willebrand factor, smooth muscle α-actin, vimentin, and fibronectin demonstrate the maintenance of the phenotype for endothelial cells, SMCs, and fibroblasts. Positive stains for mucin-5AC, cytokeratin, and E-cadherin after 7 days with and without 1% fetal bovine serum showed that EpiCs maintained the phenotype and function. This study validates magnetic levitation as a method for the rapid creation of organized 3D cocultures that maintain the phenotype and induce extracellular matrix formation.

  5. Self-consistent seismic cycle simulation in a three-dimensional continuum model: methodology and examples.

    Science.gov (United States)

    Pranger, C. C.; Le Pourhiet, L.; May, D.; van Dinther, Y.; Gerya, T.

    2016-12-01

    Subduction zones evolve over millions of years. The state of stress, the distribution of materials, and the strength and structure of the interface between the two plates is intricately tied to a host of time-dependent physical processes, such as damage, friction, (nonlinear) viscous relaxation, and fluid migration. In addition, the subduction interface has a complex three-dimensional geometry that evolves with time and can adjust in response to a changing stress environment or in response to impinging topographical features, and can even branch off as a splay fault. All in all, the behaviour of (large) earthquakes at the millisecond to minute timescale is heavily dependent on the pattern of stress accumulation during the 100 year inter-seismic period, the events occurring on or near the interface in the past thousands of years, as well as the extended geological history of the region. We address the aforementioned modeling requirements by developing a self-consistent 3D staggered grid finite difference continuum description of motion, thermal advection-diffusion, and poro-visco-elastic two-phase flow. Faults are modelled as plastic shear bands that can develop and evolve in response to a changing stress environment without having a prescribed geometry. They obey a Mohr-Coulomb or Drucker-Prager yield criterion and a rate-and-state friction law. For a sound treatment of plasticity, we borrow elements from mechanical engineering, and extend these with high-quality nonlinear iteration schemes and adaptive time-stepping to resolve the rupture process at all time scales. We will present these techniques together with proof-of-concept examples of self-consistently developing seismic cycles in 2D and 3D, including phases of stress accumulation, fault nucleation, dynamic rupture, and healing.

  6. Three-dimensional Simulations of Pure Deflagration Models for Thermonuclear Supernovae

    Science.gov (United States)

    Long, Min; Jordan, George C., IV; van Rossum, Daniel R.; Diemer, Benedikt; Graziani, Carlo; Kessler, Richard; Meyer, Bradley; Rich, Paul; Lamb, Don Q.

    2014-07-01

    We present a systematic study of the pure deflagration model of Type Ia supernovae (SNe Ia) using three-dimensional, high-resolution, full-star hydrodynamical simulations, nucleosynthetic yields calculated using Lagrangian tracer particles, and light curves calculated using radiation transport. We evaluate the simulations by comparing their predicted light curves with many observed SNe Ia using the SALT2 data-driven model and find that the simulations may correspond to under-luminous SNe Iax. We explore the effects of the initial conditions on our results by varying the number of randomly selected ignition points from 63 to 3500, and the radius of the centered sphere they are confined in from 128 to 384 km. We find that the rate of nuclear burning depends on the number of ignition points at early times, the density of ignition points at intermediate times, and the radius of the confining sphere at late times. The results depend primarily on the number of ignition points, but we do not expect this to be the case in general. The simulations with few ignition points release more nuclear energy E nuc, have larger kinetic energies E K, and produce more 56Ni than those with many ignition points, and differ in the distribution of 56Ni, Si, and C/O in the ejecta. For these reasons, the simulations with few ignition points exhibit higher peak B-band absolute magnitudes M B and light curves that rise and decline more quickly; their M B and light curves resemble those of under-luminous SNe Iax, while those for simulations with many ignition points are not.

  7. Improved convergence and stability properties in a three-dimensional higher-order ice sheet model

    Directory of Open Access Journals (Sweden)

    J. J. Fürst

    2011-07-01

    Full Text Available We present a novel finite difference implementation of a three-dimensional higher-order ice sheet model that performs well both in terms of convergence rate and numerical stability. In order to achieve these benefits the discretisation of the governing force balance equation makes extensive use of information on staggered grid points. Using the same iterative solver, an existing discretisation that operates exclusively on the regular grid serves as a reference. Participation in the ISMIP-HOM benchmark indicates that both discretisations are capable of reproducing the higher-order model inter-comparison results. This allows a direct comparison not only of the resultant velocity fields but also of the solver's convergence behaviour which holds main differences. First and foremost, the new finite difference scheme facilitates convergence by a factor of up to 7 and 2.6 in average. In addition to this decrease in computational costs, the precision for the resultant velocity field can be chosen higher in the novel finite difference implementation. For high precisions, the old discretisation experiences difficulties to converge due to large variation in the velocity fields of consecutive Picard iterations. Finally, changing discretisation prevents build-up of local field irregularites that occasionally cause divergence of the solution for the reference discretisation.

    The improved behaviour makes the new discretisation more reliable for extensive application to real ice geometries. Higher precision and robust numerics are crucial in time dependent applications since numerical oscillations in the velocity field of subsequent time steps are attenuated and divergence of the solution is prevented. Transient applications also benefit from the increased computational efficiency.

  8. Innervation pattern of the suprascapular nerve within supraspinatus: a three-dimensional computer modeling study.

    Science.gov (United States)

    Hermenegildo, J A; Roberts, S L; Kim, S Y

    2014-05-01

    The relationship between the innervation pattern of the suprascapular nerve (SSN) and the muscle architecture of supraspinatus has not been thoroughly investigated. The supraspinatus is composed of two architecturally distinct regions: anterior and posterior. Each of these regions is further subdivided into three parts: superficial, middle and deep. The purpose of this study was to investigate the course of the SSN throughout the volume of supraspinatus and to relate the intramuscular branches to the distinct regions and parts of the supraspinatus. The SSN was dissected in thirty formalin embalmed cadaveric specimens and digitized throughout the muscle volume in six of those specimens. The digitized data were modeled using Autodesk(®) Maya(®) 2011. The three-dimensional (3D) models were used to relate the intramuscular innervation pattern to the muscle and tendon architecture defined by Kim et al. (2007, Clin Anat 20:648-655). The SSN bifurcated into two main trunks: medial and lateral. All parts of the anterior region were predominantly innervated by the medial trunk and its proximal and medial branches, whereas all parts of the posterior region predominantly by the lateral trunk and its posterolateral and/or posteromedial branches. The posterior region also received innervation from the proximal branch of the medial trunk in half of the specimens. These findings provide evidence that the anterior and posterior regions are distinct with respect to their innervation. The 3D map of the innervation pattern will aid in planning future clinical studies investigating muscle activation patterns and provide insight into possible injury of the nerve with supraspinatus pathology and surgical techniques.

  9. Three-dimensional model of hydro acoustic channel for research MIMO systems

    Science.gov (United States)

    Fedosov, V. P.; Lomakina, A. V.; Legin, A. A.; Voronin, V. V.

    2017-05-01

    Currently, wireless hydroacoustic modems are actively being developed, which are used to provide efficient data transmission in the hydroacoustic channel. Such kind of developments are relevant for today, as they are used in various fields of science and fields of activity. An example is the connection with underwater vehicles for scientific, research, search and rescue purposes. Development of this kind of communication systems (modems) is a difficult task, as signal propagation is affected by various factors. As a result, the transfer characteristic changes with time, thereby imposing restrictions on the acoustic communication channel. In this regard, the researchers began the task of further study sonar environment and get a detailed mathematical description of the underwater channel. For this, a huge number of field tests were conducted, aimed at studying the underwater acoustic environment. However, the results of the research are always limited by the conditions in which the test took place. Therefore, it is not always possible to apply these results to the required conditions. All of the above features do not allow you to create some kind of a commonly accepted model for the acoustic channel, as studies based on experiments, collected in localized environments without generalizations. This paper presents, the three-dimensional model of the sonar channel for MIMO systems in the coastal zone, based on the acoustic signal propagation characteristics in the presence of multiple paths, the influence of the Doppler effect (as a result of mobile and / or base station traffic), in terms of signal attenuation, receiver characteristics influence and Transmitting antenna, etc.

  10. A three-dimensional, wave-current coupled, sediment transport model for POM

    Institute of Scientific and Technical Information of China (English)

    WANG Xiao-hua

    2010-01-01

    In the high-energy environment of coastal seas and estuaries,strong sediment resuspension/ deposition events are driven by surface waves,tides,winds and buoyancy driven currents.In recent years,A POM based three-dimensional ,wave-current coupled ,sediment transport model has been developed by the University of New South Wales.This paper presents several examples of the model applications to study sediment dynamics in the environments where forcings such as waves,tides, and winds are equally important to affect sediment fluxes and distributions.Firstly,the sediment transport model coupled to the Yellow Sea general circulation model and a third generation wave model SWAN was implemented in the Yellow Sea to study the dynamics of the sediment transport and resuspension in the northern Jiangsu shoal-water(NJSW).The sediment distributions and fluxes and their inter-annual variability were studied by realistic numerical simulations.The study found that the surface waves played a dominant role over the tides to form the turbidity maxima along the muddy coast of NJSW. Secondly,the sediment transport model was used to explore the effect of suspended sediment-induced stratificationin the bottom boundary layer(BBL).The model uses a re-parameterized bottom drag coefficient Cd that incorporates a linear stability function of flux Richardson number RsThe study has shown that the sediment induced stratification in the BBL reduces the vertical eddy viscosity and bottom shear stress in comparison with the model prediction in a neutrally stratified BBL.In response to these apparent reductions,the tidal current shear is increased and sediments are abnormally concentrated within a thin wall layer that is overlain by a thicker layer with much smaller concentration.The formation of this fluid-mud layer near the seabed has led to a significant reduction in the total sediment transport.This study contributes to the understanding of formations of tidal flats along the coasts of turbid seas

  11. Analysis of Lightning Electromagnetic Field on Large-scale Terrain Model using Three-dimensional MW-FDTD Parallel Computation

    Science.gov (United States)

    Oikawa, Takaaki; Sonoda, Jun; Sato, Motoyuki; Honma, Noriyasu; Ikegawa, Yutaka

    Analysis of lightning electromagnetic field using the FDTD method have been studied in recent year. However, large-scale three-dimensional analysis on real environment have not been considered, because the FDTD method has huge computational cost on large-scale analysis. So we have proposed a three-dimensional moving window FDTD (MW-FDTD) method with parallel computation. Our method use few computational cost than the conventional FDTD method and the original MW-FDTD method. In this paper, we have studied about computation performance of MW-FDTD parallel computation and large-scale three-dimensional analysis of lightning electromagnetic field on a real terrain model using our MW-FDTD with parallel computation.

  12. [Three-dimensional modelling of thoracic aortic aneurysm. A case report].

    Science.gov (United States)

    Carmi, D; Zegdi, R; Grebe, R; Fabiani, J N

    2001-04-01

    The anatomical forms of aneurysms are sometimes complex. Three-dimensional modelisation may be valuable in understanding the configuration and spatial orientation on one hand and also help in therapeutic decision making on the other. Two types of modelisation are reported with details of their methods and their respective values.

  13. THE CAPABILITIES USING OF THREE-DIMENSIONAL MODELING SYSTEM AUTOCAD IN TEACHING TO PERFORM GRAPHICS TASKS

    Directory of Open Access Journals (Sweden)

    A. V. Krasnyuk

    2008-03-01

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