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Sample records for model sam procedure

  1. SAM Photovoltaic Model Technical Reference

    Energy Technology Data Exchange (ETDEWEB)

    Gilman, P. [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2015-05-27

    This manual describes the photovoltaic performance model in the System Advisor Model (SAM). The U.S. Department of Energy’s National Renewable Energy Laboratory maintains and distributes SAM, which is available as a free download from https://sam.nrel.gov. These descriptions are based on SAM 2015.1.30 (SSC 41).

  2. SAM: A Simple Averaging Model of Impression Formation

    Science.gov (United States)

    Lewis, Robert A.

    1976-01-01

    Describes the Simple Averaging Model (SAM) which was developed to demonstrate impression-formation computer modeling with less complex and less expensive procedures than are required by most established programs. (RC)

  3. System Advisor Model, SAM 2014.1.14: General Description

    Energy Technology Data Exchange (ETDEWEB)

    Blair, N.; Dobos, A. P.; Freeman, J.; Neises, T.; Wagner, M.; Ferguson, T.; Gilman, P.; Janzou, S.

    2014-02-01

    This document describes the capabilities of the U.S. Department of Energy and National Renewable Energy Laboratory's System Advisor Model (SAM), Version 2013.9.20, released on September 9, 2013. SAM is a computer model that calculates performance and financial metrics of renewable energy systems. Project developers, policy makers, equipment manufacturers, and researchers use graphs and tables of SAM results in the process of evaluating financial, technology, and incentive options for renewable energy projects. SAM simulates the performance of photovoltaic, concentrating solar power, solar water heating, wind, geothermal, biomass, and conventional power systems. The financial model can represent financial structures for projects that either buy and sell electricity at retail rates (residential and commercial) or sell electricity at a price determined in a power purchase agreement (utility). SAM's advanced simulation options facilitate parametric and sensitivity analyses, and statistical analysis capabilities are available for Monte Carlo simulation and weather variability (P50/P90) studies. SAM can also read input variables from Microsoft Excel worksheets. For software developers, the SAM software development kit (SDK) makes it possible to use SAM simulation modules in their applications written in C/C++, C#, Java, Python, and MATLAB. NREL provides both SAM and the SDK as free downloads at http://sam.nrel.gov. Technical support and more information about the software are available on the website.

  4. Technical Manual for the SAM Physical Trough Model

    Energy Technology Data Exchange (ETDEWEB)

    Wagner, M. J.; Gilman, P.

    2011-06-01

    NREL, in conjunction with Sandia National Lab and the U.S Department of Energy, developed the System Advisor Model (SAM) analysis tool for renewable energy system performance and economic analysis. This paper documents the technical background and engineering formulation for one of SAM's two parabolic trough system models in SAM. The Physical Trough model calculates performance relationships based on physical first principles where possible, allowing the modeler to predict electricity production for a wider range of component geometries than is possible in the Empirical Trough model. This document describes the major parabolic trough plant subsystems in detail including the solar field, power block, thermal storage, piping, auxiliary heating, and control systems. This model makes use of both existing subsystem performance modeling approaches, and new approaches developed specifically for SAM.

  5. System Advisor Model, SAM 2011.12.2: General Description

    Energy Technology Data Exchange (ETDEWEB)

    Gilman, P.; Dobos, A.

    2012-02-01

    This document describes the capabilities of the U.S. Department of Energy and National Renewable Energy Laboratory's System Advisor Model (SAM), Version 2011.12.2, released on December 2, 2011. SAM is software that models the cost and performance of renewable energy systems. Project developers, policy makers, equipment manufacturers, and researchers use graphs and tables of SAM results in the process of evaluating financial, technology, and incentive options for renewable energy projects. SAM simulates the performance of solar, wind, geothermal, biomass, and conventional power systems. The financial model can represent financing structures for projects that either buy and sell electricity at retail rates (residential and commercial) or sell electricity at a price determined in a power purchase agreement (utility). Advanced analysis options facilitate parametric, sensitivity, and statistical analyses, and allow for interfacing SAM with Microsoft Excel or with other computer programs. SAM is available as a free download at http://sam.nrel.gov. Technical support and more information about the software are available on the website.

  6. Technoeconomic Modeling of Battery Energy Storage in SAM

    Energy Technology Data Exchange (ETDEWEB)

    DiOrio, Nicholas [National Renewable Energy Lab. (NREL), Golden, CO (United States); Dobos, Aron [National Renewable Energy Lab. (NREL), Golden, CO (United States); Janzou, Steven [National Renewable Energy Lab. (NREL), Golden, CO (United States); Nelson, Austin [National Renewable Energy Lab. (NREL), Golden, CO (United States); Lundstrom, Blake [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2015-09-01

    Detailed comprehensive lead-acid and lithium-ion battery models have been integrated with photovoltaic models in an effort to allow System Advisor Model (SAM) to offer the ability to predict the performance and economic benefit of behind the meter storage. In a system with storage, excess PV energy can be saved until later in the day when PV production has fallen, or until times of peak demand when it is more valuable. Complex dispatch strategies can be developed to leverage storage to reduce energy consumption or power demand based on the utility rate structure. This document describes the details of the battery performance and economic models in SAM.

  7. Technical Manual for the SAM Biomass Power Generation Model

    Energy Technology Data Exchange (ETDEWEB)

    Jorgenson, J.; Gilman, P.; Dobos, A.

    2011-09-01

    This technical manual provides context for the implementation of the biomass electric power generation performance model in the National Renewable Energy Laboratory's (NREL's) System Advisor Model (SAM). Additionally, the report details the engineering and scientific principles behind the underlying calculations in the model. The framework established in this manual is designed to give users a complete understanding of behind-the-scenes calculations and the results generated.

  8. The SAM framework: modeling the effects of management factors on human behavior in risk analysis.

    Science.gov (United States)

    Murphy, D M; Paté-Cornell, M E

    1996-08-01

    Complex engineered systems, such as nuclear reactors and chemical plants, have the potential for catastrophic failure with disastrous consequences. In recent years, human and management factors have been recognized as frequent root causes of major failures in such systems. However, classical probabilistic risk analysis (PRA) techniques do not account for the underlying causes of these errors because they focus on the physical system and do not explicitly address the link between components' performance and organizational factors. This paper describes a general approach for addressing the human and management causes of system failure, called the SAM (System-Action-Management) framework. Beginning with a quantitative risk model of the physical system, SAM expands the scope of analysis to incorporate first the decisions and actions of individuals that affect the physical system. SAM then links management factors (incentives, training, policies and procedures, selection criteria, etc.) to those decisions and actions. The focus of this paper is on four quantitative models of action that describe this last relationship. These models address the formation of intentions for action and their execution as a function of the organizational environment. Intention formation is described by three alternative models: a rational model, a bounded rationality model, and a rule-based model. The execution of intentions is then modeled separately. These four models are designed to assess the probabilities of individual actions from the perspective of management, thus reflecting the uncertainties inherent to human behavior. The SAM framework is illustrated for a hypothetical case of hazardous materials transportation. This framework can be used as a tool to increase the safety and reliability of complex technical systems by modifying the organization, rather than, or in addition to, re-designing the physical system.

  9. Cardiological aging in SAM model: effect of chronic treatment with growth hormone.

    Science.gov (United States)

    Forman, K; Vara, E; García, C; Ariznavarreta, C; Escames, G; Tresguerres, J A F

    2010-06-01

    The purpose of this study was to investigate the effect of aging on different parameters related to inflammation, oxidative stress and apoptosis in hearts from two types of male mice models: senescence-accelerated mice (SAM-P8) and senescence-accelerated-resistant (SAM-R1), and the influence of chronic administration of Growth Hormone (GH) on old SAM-P8 mice. Forty male mice were used. Animals were divided into five experimental groups: two 10 month old untreated groups (SAM-P8/SAM-R1), two 2 month old young groups (SAM-P8/SAM-R1) and one 10 month old group (SAM-P8) treated with GH for 30 days. The expression of tumor necrosis factor-alpha, interleukin 1, interleukin 10, heme oxygenases 1 and 2, endothelial and inducible nitric oxide synthases, NFkB, Bad, Bax and Bcl-2 were determined by real-time reverse transcription polymerase chain reaction (RT-PCR). Results were submitted to a two way ANOVA statistical evaluation using the Statgraphics program. Inflammation, as well as, oxidative stress and apoptosis markers were increased in the heart of old SAM-P8 males, as compared to young controls and this situation was not observed in the old SAM-R1 mice. Exogenous GH administration reverted the effect of aging in the described parameters of old SAM-P8 mice. Our results suggest that inflammation, apoptosis and oxidative stress could play an important role in the observed cardiovascular alterations related to aging of SAM-P8 mice and that GH may play a potential protective effect on the cardiovascular system of these animals.

  10. Molten Salt Power Tower Cost Model for the System Advisor Model (SAM)

    Energy Technology Data Exchange (ETDEWEB)

    Turchi, C. S.; Heath, G. A.

    2013-02-01

    This report describes a component-based cost model developed for molten-salt power tower solar power plants. The cost model was developed by the National Renewable Energy Laboratory (NREL), using data from several prior studies, including a contracted analysis from WorleyParsons Group, which is included herein as an Appendix. The WorleyParsons' analysis also estimated material composition and mass for the plant to facilitate a life cycle analysis of the molten salt power tower technology. Details of the life cycle assessment have been published elsewhere. The cost model provides a reference plant that interfaces with NREL's System Advisor Model or SAM. The reference plant assumes a nominal 100-MWe (net) power tower running with a nitrate salt heat transfer fluid (HTF). Thermal energy storage is provided by direct storage of the HTF in a two-tank system. The design assumes dry-cooling. The model includes a spreadsheet that interfaces with SAM via the Excel Exchange option in SAM. The spreadsheet allows users to estimate the costs of different-size plants and to take into account changes in commodity prices. This report and the accompanying Excel spreadsheet can be downloaded at https://sam.nrel.gov/cost.

  11. Fast and slow responses of Southern Ocean sea surface temperature to SAM in coupled climate models

    Science.gov (United States)

    Kostov, Yavor; Marshall, John; Hausmann, Ute; Armour, Kyle C.; Ferreira, David; Holland, Marika M.

    2017-03-01

    We investigate how sea surface temperatures (SSTs) around Antarctica respond to the Southern Annular Mode (SAM) on multiple timescales. To that end we examine the relationship between SAM and SST within unperturbed preindustrial control simulations of coupled general circulation models (GCMs) included in the Climate Modeling Intercomparison Project phase 5 (CMIP5). We develop a technique to extract the response of the Southern Ocean SST (55°S-70°S) to a hypothetical step increase in the SAM index. We demonstrate that in many GCMs, the expected SST step response function is nonmonotonic in time. Following a shift to a positive SAM anomaly, an initial cooling regime can transition into surface warming around Antarctica. However, there are large differences across the CMIP5 ensemble. In some models the step response function never changes sign and cooling persists, while in other GCMs the SST anomaly crosses over from negative to positive values only 3 years after a step increase in the SAM. This intermodel diversity can be related to differences in the models' climatological thermal ocean stratification in the region of seasonal sea ice around Antarctica. Exploiting this relationship, we use observational data for the time-mean meridional and vertical temperature gradients to constrain the real Southern Ocean response to SAM on fast and slow timescales.

  12. Parabolic Trough Reference Plant for Cost Modeling with the Solar Advisor Model (SAM)

    Energy Technology Data Exchange (ETDEWEB)

    Turchi, C.

    2010-07-01

    This report describes a component-based cost model developed for parabolic trough solar power plants. The cost model was developed by the National Renewable Energy Laboratory (NREL), assisted by WorleyParsons Group Inc., for use with NREL's Solar Advisor Model (SAM). This report includes an overview and explanation of the model, two summary contract reports from WorleyParsons, and an Excel spreadsheet for use with SAM. The cost study uses a reference plant with a 100-MWe capacity and six hours of thermal energy storage. Wet-cooling and dry-cooling configurations are considered. The spreadsheet includes capital and operating cost by component to allow users to estimate the impact of changes in component costs.

  13. Integration, Validation, and Application of a PV Snow Coverage Model in SAM

    Energy Technology Data Exchange (ETDEWEB)

    Freeman, Janine M. [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Ryberg, David Severin [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2017-08-01

    Due to the increasing deployment of PV systems in snowy climates, there is significant interest in a method capable of estimating PV losses resulting from snow coverage that has been verified for a variety of system designs and locations. Many independent snow coverage models have been developed over the last 15 years; however, there has been very little effort verifying these models beyond the system designs and locations on which they were based. Moreover, major PV modeling software products have not yet incorporated any of these models into their workflows. In response to this deficiency, we have integrated the methodology of the snow model developed in the paper by Marion et al. (2013) into the National Renewable Energy Laboratory's (NREL) System Advisor Model (SAM). In this work, we describe how the snow model is implemented in SAM and we discuss our demonstration of the model's effectiveness at reducing error in annual estimations for three PV arrays. Next, we use this new functionality in conjunction with a long term historical data set to estimate average snow losses across the United States for two typical PV system designs. The open availability of the snow loss estimation capability in SAM to the PV modeling community, coupled with our results of the nationwide study, will better equip the industry to accurately estimate PV energy production in areas affected by snowfall.

  14. Integration, Validation, and Application of a PV Snow Coverage Model in SAM

    Energy Technology Data Exchange (ETDEWEB)

    Ryberg, David [National Renewable Energy Lab. (NREL), Golden, CO (United States); Freeman, Janine [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2015-09-01

    Due to the increasing deployment of PV systems in snowy climates, there is significant interest in a method capable of estimating PV losses resulting from snow coverage that has been verified for a wide variety of system designs and locations. A scattering of independent snow coverage models have been developed over the last 15 years; however, there has been very little effort spent on verifying these models beyond the system design and location on which they were based. Moreover, none of the major PV modeling software products have incorporated any of these models into their workflow. In response to this deficiency, we have integrated the methodology of the snow model developed in the paper by Marion et al. [1] into the National Renewable Energy Laboratory's (NREL) System Advisor Model (SAM). In this work we describe how the snow model is implemented in SAM and discuss our demonstration of the model's effectiveness at reducing error in annual estimations for two PV arrays. Following this, we use this new functionality in conjunction with a long term historical dataset to estimate average snow losses across the United States for a typical PV system design. The open availability of the snow loss estimation capability in SAM to the PV modeling community, coupled with our results of the nation-wide study, will better equip the industry to accurately estimate PV energy production in areas affected by snowfall.

  15. Spill Assessment Model (SAM) Procedure for Manual Field Calculations.

    Science.gov (United States)

    1980-04-01

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  16. Integrated Krill Model WG-SAM-14/20

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The integrated modeling framework for Antarctic krill (Euphausia superba) has been extended to include estimates of krill growth consistent with survey data and to...

  17. SAM in a Nutshell.

    Science.gov (United States)

    Givens, Larry R.

    2000-01-01

    Explains what the Association of Higher Education Facilities Officers' Strategic Assessment Model (SAM) is and how to use it to achieve organizational excellence through continuous improvement. Showing features of both the Malcolm Baldrige programs and the Balanced Scorecard, the SAM components are described along with an explanation of the four…

  18. Evolution of SAM in an Enhanced Model for Monitoring WLCG Services

    CERN Document Server

    Collados, D; Traylen, S; Imamagic, E; CERN. Geneva. IT Department

    2010-01-01

    It is four years now since the first prototypes of tools and tests started to monitor the Worldwide LHC Computing Grid (WLCG) services. One of these tools is the Service Availability Monitoring (SAM) framework, which superseded the SFT tool, and has become a keystone for the monthly WLCG availability and reliability computations. During this time, the grid has evolved into a robust, production-level infrastructure, in no small part thanks to the extensive monitoring infrastructure which includes testing, visualization and reporting. Experience gained with monitoring has led to emerging grid monitoring standards, and provided valuable input for the Operations Automation Strategy aimed at the regionalization of monitoring services. This change in scope, together with an ever-increasing number of services and infrastructures, make enhancements in the architecture of existing monitoring tools a necessity. This paper describes the present architecture of SAM, an enhanced and distributed model for monitoring WLCG s...

  19. Parabolic Trough Collector Cost Update for the System Advisor Model (SAM)

    Energy Technology Data Exchange (ETDEWEB)

    Kurup, Parthiv [National Renewable Energy Lab. (NREL), Golden, CO (United States); Turchi, Craig S. [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2015-11-01

    This report updates the baseline cost for parabolic trough solar fields in the United States within NREL's System Advisor Model (SAM). SAM, available at no cost at https://sam.nrel.gov/, is a performance and financial model designed to facilitate decision making for people involved in the renewable energy industry. SAM is the primary tool used by NREL and the U.S. Department of Energy (DOE) for estimating the performance and cost of concentrating solar power (CSP) technologies and projects. The study performed a bottom-up build and cost estimate for two state-of-the-art parabolic trough designs -- the SkyTrough and the Ultimate Trough. The SkyTrough analysis estimated the potential installed cost for a solar field of 1500 SCAs as $170/m2 +/- $6/m2. The investigation found that SkyTrough installed costs were sensitive to factors such as raw aluminum alloy cost and production volume. For example, in the case of the SkyTrough, the installed cost would rise to nearly $210/m2 if the aluminum alloy cost was $1.70/lb instead of $1.03/lb. Accordingly, one must be aware of fluctuations in the relevant commodities markets to track system cost over time. The estimated installed cost for the Ultimate Trough was only slightly higher at $178/m2, which includes an assembly facility of $11.6 million amortized over the required production volume. Considering the size and overall cost of a 700 SCA Ultimate Trough solar field, two parallel production lines in a fully covered assembly facility, each with the specific torque box, module and mirror jigs, would be justified for a full CSP plant.

  20. Sandwich Sam

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    SAM, a 28-year-old Canadian, has a nice family name: Goodman. Four years ago, he came to China and now he owns two cafes. Sam is not tall. To match his loose black sweater, he wears a pair of jeans which are so long that the trouser legs are wrinkled over his sneakers. Why did he think of running a cafe in Beijing? "After graduating from college, I went to Hong Kong to be a fitness coach for half a year. Then, I went to South Korea. While sightseeing, I taught English to make a living.

  1. SAM Theory Manual

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Rui [Argonne National Lab. (ANL), Argonne, IL (United States)

    2017-03-01

    The System Analysis Module (SAM) is an advanced and modern system analysis tool being developed at Argonne National Laboratory under the U.S. DOE Office of Nuclear Energy’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. SAM development aims for advances in physical modeling, numerical methods, and software engineering to enhance its user experience and usability for reactor transient analyses. To facilitate the code development, SAM utilizes an object-oriented application framework (MOOSE), and its underlying meshing and finite-element library (libMesh) and linear and non-linear solvers (PETSc), to leverage modern advanced software environments and numerical methods. SAM focuses on modeling advanced reactor concepts such as SFRs (sodium fast reactors), LFRs (lead-cooled fast reactors), and FHRs (fluoride-salt-cooled high temperature reactors) or MSRs (molten salt reactors). These advanced concepts are distinguished from light-water reactors in their use of single-phase, low-pressure, high-temperature, and low Prandtl number (sodium and lead) coolants. As a new code development, the initial effort has been focused on modeling and simulation capabilities of heat transfer and single-phase fluid dynamics responses in Sodium-cooled Fast Reactor (SFR) systems. The system-level simulation capabilities of fluid flow and heat transfer in general engineering systems and typical SFRs have been verified and validated. This document provides the theoretical and technical basis of the code to help users understand the underlying physical models (such as governing equations, closure models, and component models), system modeling approaches, numerical discretization and solution methods, and the overall capabilities in SAM. As the code is still under ongoing development, this SAM Theory Manual will be updated periodically to keep it consistent with the state of the development.

  2. Review and standardization of cell phone exposure calculations using the SAM phantom and anatomically correct head models

    Directory of Open Access Journals (Sweden)

    Kainz Wolfgang

    2004-10-01

    Full Text Available Abstract We reviewed articles using computational RF dosimetry to compare the Specific Anthropomorphic Mannequin (SAM to anatomically correct models of the human head. Published conclusions based on such comparisons have varied widely. We looked for reasons that might cause apparently similar comparisons to produce dissimilar results. We also looked at the information needed to adequately compare the results of computational RF dosimetry studies. We concluded studies were not comparable because of differences in definitions, models, and methodology. Therefore we propose a protocol, developed by an IEEE standards group, as an initial step in alleviating this problem. The protocol calls for a benchmark validation study comparing the SAM phantom to two anatomically correct models of the human head. It also establishes common definitions and reporting requirements that will increase the comparability of all computational RF dosimetry studies of the human head.

  3. ReefSAM - Reef Sedimentary Accretion Model: A new 3D coral reef evolution model/simulator

    Science.gov (United States)

    Barrett, Samuel; Webster, Jody

    2013-04-01

    Coral reefs show characteristic morphological patterns (e.g. coral dominated margins with detrital carbonate dominated lagoons/back-reef) and temporal development (e.g. Hopley et al. 2007). While the processes which lead to predictable patterns on a range of scales have been discussed qualitatively, a full quantitative understanding of the range of processes and parameters involved requires modelling. Previous attempts to model complex Holocene reef systems (i.e. One Tree Reef, GBR - Barrett and Webster 2012) using a carbonate stratigraphic forward model (Carbonate3D - Warrlich et al. 2002) identified a number of important but unsimulated processes and potential model improvements. ReefSAM has been written from scratch in Matlab using these findings and experiences from using Carbonate3D. It simulates coralgal accretion and carbonate sand production and transport. Specific improvements include: 1. a more complex hydrodynamic model based on wave refraction and incorporating vertical (depth) and lateral (substrate dependent) variations in transport energy and erosion. 2. a complex reef growth model incorporating depth, wave energy/turbidity and substrate composition. 3. Paleo-water depth, paleo-wave energy and bio-zone (combination of paleo-water depth and wave energy) model outputs allowing coralgal habitat changes through time and space to be simulated and compared to observational data. The model is compared to the well studied One Tree Reef - tests similar to those undertaken in Barrett and Webster 2012 with Carbonate3D are presented. Model development coincides with plans for further intensive drilling at One Tree Reef (mid 2013) providing an opportunity to test the model predictively. The model is still in active development. References: Barrett, S.J., Webster, J.M.,2012. Holocene evolution of the Great Barrier Reef: Insights from 3D numerical modelling. Sedimentary Geology 265-266, 56-71. Warrlich, G.M.D., Waltham, D.A., Bosence D.W.J., 2002. Quantifying the

  4. The SAM software system for modeling severe accidents at nuclear power plants equipped with VVER reactors on full-scale and analytic training simulators

    Science.gov (United States)

    Osadchaya, D. Yu.; Fuks, R. L.

    2014-04-01

    The architecture of the SAM software package intended for modeling beyond-design-basis accidents at nuclear power plants equipped with VVER reactors evolving into a severe stage with core melting and failure of the reactor pressure vessel is presented. By using the SAM software package it is possible to perform comprehensive modeling of the entire emergency process from the failure initiating event to the stage of severe accident involving meltdown of nuclear fuel, failure of the reactor pressure vessel, and escape of corium onto the concrete basement or into the corium catcher with retention of molten products in it.

  5. Tracking the MSL-SAM methane detection source location Through Mars Regional Atmospheric Modeling System (MRAMS)

    Science.gov (United States)

    Pla-García, Jorge

    2016-04-01

    1. Introduction: The putative in situ detection of methane by Sample Analysis at Mars (SAM) instrument suite on Curiosi-ty at Gale crater has garnered significant attention because of the potential implications for the presence of geological methane sources or indigenous Martian organisms [1, 2]. SAM reported detection of back-ground levels of atmospheric methane of mean value 0.69±0.25 parts per billion by volume (ppbv) at the 95% confidence interval (CI). Additionally, in four sequential measurements spanning a 60-sol period, SAM observed elevated levels of methane of 7.2±2.1 ppbv (95% CI), implying that Mars is episodically producing methane from an additional unknown source. There are many major unresolved questions regard-ing this detection: 1) What are the potential sources of the methane release? 2) What causes the rapid decrease in concentration? and 3) Where is the re-lease location? 4) How spatially extensive is the re-lease? 5) For how long is CH4 released? Regarding the first question, the source of methane, is so far not identified. It could be related with geo-logical process like methane release from clathrates [3], serpentinisation [4] and volcanism [5]; or due to biological activity from methanogenesis [6]. To answer the second question, the rapid decrease in concentration, it is important to note that the photo-chemical lifetime of methane is of order 100 years, much longer than the atmospheric mixing time scale, and thus the gas should tend to be well mixed except near a source or shortly after an episodic release. The observed spike of 7 ppb from the background of year, simulations were con-ducted at Ls 0, 90, 180 and 270. Two additional sim-ulations at Ls 225 and 315 were explored to better understand the unique meteorological setting cen-tered around Ls 270. Ls 270 was shown to be an anomalous season when air within and outside the crater was well mixed by strong, flushing, northerly flow and large amplitude breaking mountain waves: air

  6. SAP Minutes No.2015-03 for FIFRA meeting held 9/15-17/2015. A set of scientific issues being considered by the Environmental Protection Agency regarding development of a spatial aquatic model(SAM)for pesticide risk assessment

    Science.gov (United States)

    On September 15-17th, 2014, the US Environmental Protection Agency convened a public meeting of the FIFRA Scientific Advisory Panel (SAP) to address scientific issues associated with the agency’s “Development of a Spatial Aquatic Model (SAM) for Pesticide Risk Assessment”. The goal of SAM is to impr...

  7. Results and Comparison from the SAM Linear Fresnel Technology Performance Model: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Wagner, M. J.

    2012-04-01

    This paper presents the new Linear Fresnel technology performance model in NREL's System Advisor Model. The model predicts the financial and technical performance of direct-steam-generation Linear Fresnel power plants, and can be used to analyze a range of system configurations. This paper presents a brief discussion of the model formulation and motivation, and provides extensive discussion of the model performance and financial results. The Linear Fresnel technology is also compared to other concentrating solar power technologies in both qualitative and quantitative measures. The Linear Fresnel model - developed in conjunction with the Electric Power Research Institute - provides users with the ability to model a variety of solar field layouts, fossil backup configurations, thermal receiver designs, and steam generation conditions. This flexibility aims to encompass current market solutions for the DSG Linear Fresnel technology, which is seeing increasing exposure in fossil plant augmentation and stand-alone power generation applications.

  8. A Form—Correcting System of Chinese Characters Using a Model of Correcting Procedures of Calligraphists

    Institute of Scientific and Technical Information of China (English)

    曾建超; HidehikoSanada; 等

    1995-01-01

    A support system for form-correction of Chinese Characters is developed based upon a generation model SAM,and its feasibility is evaluated.SAM is excellent as a model for generating Chinese characters,but it is difficult to determine appropriate parameters because the use of calligraphic knowledge is needed.by noticing that calligraphic knowledge of calligraphists is included in their corrective actions, we adopt a strategy to acquire calligraphic knowledge by monitoring,recording and analyzing corrective actions of calligraphists,and try to realize an environment under which calligraphists can easily make corrections to character forms and which can record corrective actions of calligraphists without interfering with them.In this paper,we first construct a model of correcting procedures of calligraphists,which is composed of typical correcting procedures that are acquired by extensively observing their corrective actions and interviewing them,and develop a form-correcting system for brush-written Chinese characters by using the model.Secondly,through actual correcting experiments,we demonstrate that parameters within SAM can be easily corrected at the level of character patterns by our system,and show that it is effective and easy for calligraphists to be used by evaluating effectiveness of the correcting model,sufficiency of its functions and execution speed.

  9. Fast and slow responses of Southern Ocean sea surface temperature to SAM in coupled climate models

    Science.gov (United States)

    Krishnamurti, T. N.; Kumar, Vinay; Simon, Anu; Thomas, Aype; Bhardwaj, Amit; Das, Sweta; Senroy, Soma; Roy Bhowmik, S. K.

    2016-06-01

    A major rain storm in Uttarakhand (India) caused heavy rains and major loss of life from floods and land slide during 16-18 June, 2013. The observed daily maximum rainfall rates (3-hourly) during the 16th and 17th June were 220 and 340 mm respectively. This event is addressed via sensitivity studies using a cloud resolving non-hydrostatic model with detailed microphysics. The streaming of moist air from the east-south-east and warmer air from the south-west contributed to the sustained large population and amplitude of buoyancy and the associated CAPE contributed to the longer period of heavy rains. This study addresses the concept of Buoyancy as a means for large vertical accelerations, stronger vertical motions, extreme rain rates and the mechanisms that relate to the time rates of change. A post-processing algorithm provides an analysis of time rate of change for the buoyancy. Moist air streams and warm/moist air intrusions into heavily raining clouds are part of this buoyancy enhancement framework. Improvements in modeling of the extreme rain event came from adaptive observational strategy that showed lack of moisture data sets in these vital regions. We show that a moist boundary layer near the Bay of Bengal leads to moist rivers of moisture where the horizontal convergence confines a large population of buoyancy elements with large magnitudes of buoyancy that streams towards the region of extreme orographic rains. The areas covered in this study include: (i) Use of high resolution cloud modeling (1-km), (ii) Now casting of rains using physical initialization with a Newtonian relaxation, (iii) Use of an adaptive observational strategy, (iii) Sensitivity of the evolution of fields and population of buoyancy elements to boundary layer moisture, (iv) Role of orography and details of buoyancy budget.

  10. Structural and functional characterization of S-adenosylmethionine (SAM) synthetase from Pichia ciferrii.

    Science.gov (United States)

    Yoon, Sangyoung; Lee, Wonkyu; Kim, Minsoo; Kim, T Doohun; Ryu, Yeonwoo

    2012-01-01

    S-adenosylmethionine synthetase (SAM-s) catalyzes the synthesis of S-adenosylmethionine (SAM), which is essential for methylation, transcription, proliferation, and production of secondary metabolites. Here SAM-s from Pichia ciferrii were selectively cloned using RNA CapFishing and rapid amplification of cDNA ends (RACE). The putative full-length cDNA of SAM-s encoded a 383 amino acid protein (42.6 kDa), which has highly conserved metal binding sites, a phosphate-binding site, and functionally important motifs. The corresponding enzyme was over-expressed in a heterologous host of Pichia pastoris, and then purified to a homogenous form. Enzyme kinetics, immunoblotting, circular dichroism (CD), high performance liquid chromatography (HPLC), and molecular modeling were conducted to characterize the SAM-s from P. ciferrii. Structural and functional studies of SAM-s will provide important insights for industrial applications.

  11. A Thermodynamics Model for the Emergence of a Stripe-like Binary SAM on a Nanoparticle Surface.

    Science.gov (United States)

    Ge, Xinwei; Ke, Pu Chun; Davis, Thomas P; Ding, Feng

    2015-10-01

    It has been under debate if a self-assembled monolayer (SAM) with two immiscible ligands of different chain lengths and/or bulkiness can form a stripe-like pattern on a nanoparticle (NP) surface. The entropic gain upon such pattern formation due to difference in chain lengths and/or bulkiness has been proposed as the driving force in literature. Using atomistic discrete molecular dynamics simulations it is shown that stripe-like pattern could indeed emerge, but only for a subset of binary SAM systems. In addition to entropic contributions, the formation of a striped pattern also strongly depends upon interligand interactions governed by the physicochemical properties of the ligand constituents. Due to the interplay between entropy and enthalpy, a binary SAM system can be categorized into three different types depending on whether and under what condition a striped pattern can emerge. The results help clarify the ongoing debate and our proposed principle can aid in the engineering of novel binary SAMs on a NP surface.

  12. Local sphere-based co-registration for SAM group analysis in subjects without individual MRI.

    Science.gov (United States)

    Steinstraeter, O; Teismann, Inga K; Wollbrink, A; Suntrup, S; Stoeckigt, K; Dziewas, R; Pantev, C

    2009-03-01

    Synthetic aperture magnetometry (SAM) is a powerful MEG source localization method to analyze evoked as well as induced brain activity. To gain structural information of the underlying sources, especially in group studies, individual magnetic resonance images (MRI) are required for co-registration. During the last few years, the relevance of MEG measurements on understanding the pathophysiology of different diseases has noticeable increased. Unfortunately, especially in patients and small children, structural MRI scans cannot always be performed. Therefore, we developed a new method for group analysis of SAM results without requiring structural MRI data that derives its geometrical information from the individual volume conductor model constructed for the SAM analysis. The normalization procedure is fast, easy to implement and integrates seamlessly into an existing landmark based MEG-MRI co-registration procedure. This new method was evaluated on different simulated points as well as on a pneumatic index finger stimulation paradigm analyzed with SAM. Compared with an established MRI-based normalization procedure (SPM2) the new method shows only minor errors in single subject results as well as in group analysis. The mean difference between the two methods was about 4 mm for the simulated as well as for finger stimulation data. The variation between individual subjects was generally higher than the error induced by the missing MRIs. The method presented here is therefore sufficient for most MEG group studies. It allows accomplishing MEG studies with subject groups where MRI measurements cannot be performed.

  13. CareSam

    DEFF Research Database (Denmark)

    Liveng, Anne; Christensen, Jonas

    2016-01-01

    negative cultural perceptions of help-needing elderly and the people who support them in everyday life? In answering these questions and thereby reflecting on our own work process we apply a caring, a learning and a political perspective. Hereby the article wishes to formulate a methodological point......This article presents findings and discussions generated on the basis of the Danish-Swedish development project CareSam. The article will on the one hand focus on how work in groups consisting of representatives from different levels in the elderly care sector at one time served as learning spaces...... in the project-groups this paper will ask whether it is possible to represent care work for elderly people with all the ambiguities it holds: How can we as researchers represent both meaningfulness and straining dimensions of care work? Can we avoid either supporting Florence Nightingale-ideals or cementing...

  14. Applying Modeling Tools to Ground System Procedures

    Science.gov (United States)

    Di Pasquale, Peter

    2012-01-01

    As part of a long-term effort to revitalize the Ground Systems (GS) Engineering Section practices, Systems Modeling Language (SysML) and Business Process Model and Notation (BPMN) have been used to model existing GS products and the procedures GS engineers use to produce them.

  15. Procedural Modeling for Digital Cultural Heritage

    Directory of Open Access Journals (Sweden)

    Müller Pascal

    2009-01-01

    Full Text Available The rapid development of computer graphics and imaging provides the modern archeologist with several tools to realistically model and visualize archeological sites in 3D. This, however, creates a tension between veridical and realistic modeling. Visually compelling models may lead people to falsely believe that there exists very precise knowledge about the past appearance of a site. In order to make the underlying uncertainty visible, it has been proposed to encode this uncertainty with different levels of transparency in the rendering, or of decoloration of the textures. We argue that procedural modeling technology based on shape grammars provides an interesting alternative to such measures, as they tend to spoil the experience for the observer. Both its efficiency and compactness make procedural modeling a tool to produce multiple models, which together sample the space of possibilities. Variations between the different models express levels of uncertainty implicitly, while letting each individual model keeping its realistic appearance. The underlying, structural description makes the uncertainty explicit. Additionally, procedural modeling also yields the flexibility to incorporate changes as knowledge of an archeological site gets refined. Annotations explaining modeling decisions can be included. We demonstrate our procedural modeling implementation with several recent examples.

  16. Testing new approaches to carbonate system simulation at the reef scale: the ReefSam model first results, application to a question in reef morphology and future challenges.

    Science.gov (United States)

    Barrett, Samuel; Webster, Jody

    2016-04-01

    Numerical simulation of the stratigraphy and sedimentology of carbonate systems (carbonate forward stratigraphic modelling - CFSM) provides significant insight into the understanding of both the physical nature of these systems and the processes which control their development. It also provides the opportunity to quantitatively test conceptual models concerning stratigraphy, sedimentology or geomorphology, and allows us to extend our knowledge either spatially (e.g. between bore holes) or temporally (forwards or backwards in time). The later is especially important in determining the likely future development of carbonate systems, particularly regarding the effects of climate change. This application, by its nature, requires successful simulation of carbonate systems on short time scales and at high spatial resolutions. Previous modelling attempts have typically focused on the scales of kilometers and kilo-years or greater (the scale of entire carbonate platforms), rather than at the scale of centuries or decades, and tens to hundreds of meters (the scale of individual reefs). Previous work has identified limitations in common approaches to simulating important reef processes. We present a new CFSM, Reef Sedimentary Accretion Model (ReefSAM), which is designed to test new approaches to simulating reef-scale processes, with the aim of being able to better simulate the past and future development of coral reefs. Four major features have been tested: 1. A simulation of wave based hydrodynamic energy with multiple simultaneous directions and intensities including wave refraction, interaction, and lateral sheltering. 2. Sediment transport simulated as sediment being moved from cell to cell in an iterative fashion until complete deposition. 3. A coral growth model including consideration of local wave energy and composition of the basement substrate (as well as depth). 4. A highly quantitative model testing approach where dozens of output parameters describing the reef

  17. Tobacco-free economy: A SAM-based multiplier model to quantify the impact of changes in tobacco demand in Bangladesh.

    Science.gov (United States)

    Husain, Muhammad Jami; Khondker, Bazlul Haque

    2016-01-01

    In Bangladesh, where tobacco use is pervasive, reducing tobacco use is economically beneficial. This paper uses the latest Bangladesh social accounting matrix (SAM) multiplier model to quantify the economy-wide impact of demand-driven changes in tobacco cultivation, bidi industries, and cigarette industries. First, we compute various income multiplier values (i.e. backward linkages) for all production activities in the economy to quantify the impact of changes in demand for the corresponding products on gross output for 86 activities, demand for 86 commodities, returns to four factors of production, and income for eight household groups. Next, we rank tobacco production activities by income multiplier values relative to other sectors. Finally, we present three hypothetical 'tobacco-free economy' scenarios by diverting demand from tobacco products into other sectors of the economy and quantifying the economy-wide impact. The simulation exercises with three different tobacco-free scenarios show that, compared to the baseline values, total sectoral output increases by 0.92%, 1.3%, and 0.75%. The corresponding increases in the total factor returns (i.e. GDP) are 1.57%, 1.75%, and 1.75%. Similarly, total household income increases by 1.40%, 1.58%, and 1.55%.

  18. The global middle-atmosphere aerosol model MAECHAM5-SAM2: comparison with satellite and in-situ observations

    Directory of Open Access Journals (Sweden)

    R. Hommel

    2011-09-01

    Full Text Available In this paper we investigate results from a three-dimensional middle-atmosphere aerosol-climate model which has been developed to study the evolution of stratospheric aerosols. Here we focus on the stratospheric background period and evaluate several key quantities of the global distribution of stratospheric aerosols and their precursors with observations and other model studies. It is shown that the model fairly well reproduces in situ observations of the aerosol size and number concentrations in the upper troposphere and lower stratosphere (UT/LS. Compared to measurements from the limb-sounding SAGE II satellite instrument, modelled integrated aerosol quantities are more biased the lower the moment of the aerosol population is. Both findings are consistent with earlier work analysing the quality of SAGE II retrieved e.g. aerosol surface area densities in the volcanically unperturbed stratosphere (SPARC/ASAP, 2006; Thomason et al., 2008; Wurl et al., 2010.

    The model suggests that new particles are formed over large areas of the LS, albeit nucleation rates in the upper troposphere are at least one order of magnitude larger than those in the stratosphere. Hence, we suggest that both, tropospheric sulphate aerosols and particles formed in situ in the LS are maintaining the stability of the stratospheric aerosol layer in the absence of direct stratospheric emissions from volcanoes. Particle size distributions are clearly bimodal, except in the upper branches of the stratospheric aerosol layer where aerosols evaporate. Modelled concentrations of condensation nuclei (CN are smaller than measured in regions of the aerosol layer where aerosol mixing ratios are largest. This points to an overestimated particle growth by coagulation.

    Transport regimes of tropical stratospheric aerosol have been identified from modelled aerosol mixing ratios and correspond to those deduced from satellite extinction measurements. We found that convective

  19. Numerical and analytical models to investigate the AC high-frequency response of nanoelectrode/SAM/electrolyte capacitive sensing elements

    Science.gov (United States)

    Pittino, Federico; Selmi, Luca; Widdershoven, Frans

    2013-10-01

    We develop theoretical models and numerical simulators to accurately describe the AC signal response of nanoelectrodes to the presence of biomolecules, in order to aid the design of capacitive biosensors. In particular, we first develop an analytical model for the electrolyte response to AC signal stimulation, showing that it is possible to define an AC screening length as in the standard Debye-Hückel theory. We then develop a full-custom numerical simulator for a simple nanoelectrode system, where the AC part is solved in the small-signal approximation, coupled to the DC solution. We validate the solver using the analytical model, and then use it to understand the effect of a dielectric biomolecule on the biosensor admittance.

  20. Procedural Personas for Player Decision Modeling and Procedural Content Generation

    DEFF Research Database (Denmark)

    Holmgård, Christoffer

    2016-01-01

    in specific games. It further explores how simple utility functions, easily defined and changed by game designers, can be used to construct agents expressing a variety of decision making styles within a game, using a variety of contemporary AI approaches, naming the resulting agents "Procedural Personas......." These methods for constructing procedural personas are then integrated with existing procedural content generation systems, acting as critics that shape the output of these systems, optimizing generated content for different personas and by extension, different kinds of players and their decision making styles...

  1. A Procedural Model for Process Improvement Projects

    OpenAIRE

    Kreimeyer, Matthias;Daniilidis, Charampos;Lindemann, Udo

    2017-01-01

    Process improvement projects are of a complex nature. It is therefore necessary to use experience and knowledge gained in previous projects when executing a new project. Yet, there are few pragmatic planning aids, and transferring the institutional knowledge from one project to the next is difficult. This paper proposes a procedural model that extends common models for project planning to enable staff on a process improvement project to adequately plan their projects, enabling them to documen...

  2. A procedure for building product models

    DEFF Research Database (Denmark)

    Hvam, Lars; Riis, Jesper; Malis, Martin

    2001-01-01

    with product models. The next phase includes an analysis of the product assortment, and the set up of a so-called product master. Finally the product model is designed and implemented using object oriented modelling. The procedure is developed in order to ensure that the product models constructed are fit...... for the business processes they support, and properly structured and documented, in order to facilitate that the systems can be maintained continually and further developed. The research has been carried out at the Centre for Industrialisation of Engineering, Department of Manufacturing Engineering, Technical...

  3. Procedural Personas for Player Decision Modeling and Procedural Content Generation

    DEFF Research Database (Denmark)

    Holmgård, Christoffer

    2016-01-01

    ." These methods for constructing procedural personas are then integrated with existing procedural content generation systems, acting as critics that shape the output of these systems, optimizing generated content for different personas and by extension, different kinds of players and their decision making styles....... This thesis explores methods for creating low-complexity, easily interpretable, generative AI agents for use in game and simulation design. Based on insights from decision theory and behavioral economics, the thesis investigates how player decision making styles may be defined, operationalised, and measured...... in specific games. It further explores how simple utility functions, easily defined and changed by game designers, can be used to construct agents expressing a variety of decision making styles within a game, using a variety of contemporary AI approaches, naming the resulting agents "Procedural Personas...

  4. System for Award Management (SAM) API

    Data.gov (United States)

    General Services Administration — The SAM API is a RESTful method of retrieving public information about the businesses, organizations, or individuals (referred to as entities) within the SAM entity...

  5. Procedural Optimization Models for Multiobjective Flexible JSSP

    Directory of Open Access Journals (Sweden)

    Elena Simona NICOARA

    2013-01-01

    Full Text Available The most challenging issues related to manufacturing efficiency occur if the jobs to be sched-uled are structurally different, if these jobs allow flexible routings on the equipments and mul-tiple objectives are required. This framework, called Multi-objective Flexible Job Shop Scheduling Problems (MOFJSSP, applicable to many real processes, has been less reported in the literature than the JSSP framework, which has been extensively formalized, modeled and analyzed from many perspectives. The MOFJSSP lie, as many other NP-hard problems, in a tedious place where the vast optimization theory meets the real world context. The paper brings to discussion the most optimization models suited to MOFJSSP and analyzes in detail the genetic algorithms and agent-based models as the most appropriate procedural models.

  6. Robust estimation procedure in panel data model

    Energy Technology Data Exchange (ETDEWEB)

    Shariff, Nurul Sima Mohamad [Faculty of Science of Technology, Universiti Sains Islam Malaysia (USIM), 71800, Nilai, Negeri Sembilan (Malaysia); Hamzah, Nor Aishah [Institute of Mathematical Sciences, Universiti Malaya, 50630, Kuala Lumpur (Malaysia)

    2014-06-19

    The panel data modeling has received a great attention in econometric research recently. This is due to the availability of data sources and the interest to study cross sections of individuals observed over time. However, the problems may arise in modeling the panel in the presence of cross sectional dependence and outliers. Even though there are few methods that take into consideration the presence of cross sectional dependence in the panel, the methods may provide inconsistent parameter estimates and inferences when outliers occur in the panel. As such, an alternative method that is robust to outliers and cross sectional dependence is introduced in this paper. The properties and construction of the confidence interval for the parameter estimates are also considered in this paper. The robustness of the procedure is investigated and comparisons are made to the existing method via simulation studies. Our results have shown that robust approach is able to produce an accurate and reliable parameter estimates under the condition considered.

  7. Automation of one-loop calculations with GoSam

    Energy Technology Data Exchange (ETDEWEB)

    Soden-Fraunhofen, Johann Felix von [Max-Planck-Institut fuer Physik, Muenchen (Germany)

    2012-07-01

    The program package GoSam can be used to calculate multi-leg one-loop amplitudes within and beyond the Standard Model. An extension is additionally presented which allows to calculate integrals where the rank is larger than the number of propagators. One possible application of this feature is the calculation of QCD corrections within models involving extra dimensions.

  8. Sam37 is crucial for formation of the mitochondrial TOM-SAM supercomplex, thereby promoting β-barrel biogenesis.

    Science.gov (United States)

    Wenz, Lena-Sophie; Ellenrieder, Lars; Qiu, Jian; Bohnert, Maria; Zufall, Nicole; van der Laan, Martin; Pfanner, Nikolaus; Wiedemann, Nils; Becker, Thomas

    2015-09-28

    Biogenesis of mitochondrial β-barrel proteins requires two preprotein translocases, the general translocase of the outer membrane (TOM) and the sorting and assembly machinery (SAM). TOM and SAM form a supercomplex that promotes transfer of β-barrel precursors. The SAM core complex contains the channel protein Sam50, which cooperates with Sam35 in precursor recognition, and the peripheral membrane protein Sam37. The molecular function of Sam37 has been unknown. We report that Sam37 is crucial for formation of the TOM-SAM supercomplex. Sam37 interacts with the receptor domain of Tom22 on the cytosolic side of the mitochondrial outer membrane and links TOM and SAM complexes. Sam37 thus promotes efficient transfer of β-barrel precursors to the SAM complex. We conclude that Sam37 functions as a coupling factor of the translocase supercomplex of the mitochondrial outer membrane. © 2015 Wenz et al.

  9. SAM and the Particle Physics Data Grid

    Institute of Scientific and Technical Information of China (English)

    LauriLoebel-Carpenter; LeeLueking; 等

    2001-01-01

    The D0 experiment's data and job management system software,SAM,is an operational prototype of many of the concepts being developed for Grid computing .We explain how the components of SAM map into the Data Grid architecture,We discuss the future use of Grid components to either replace existing components of SAM or to extend its functionality and utility.owrk being carried out as part of the Particle Physics Data Grid(PPDG) project.

  10. A Survey on Procedural Modelling for Virtual Worlds

    NARCIS (Netherlands)

    Smelik, R.M.; Tutenel, T.; Bidarra, R.; Benes, B.

    2014-01-01

    Procedural modelling deals with (semi-)automatic content generation by means of a program or procedure. Among other advantages, its data compression and the potential to generate a large variety of detailed content with reduced human intervention, have made procedural modelling attractive for creati

  11. SAM-2 ground-truth plan: Correlative measurements for the Stratospheric Aerosol Measurement-2 (SAM 2) sensor on the Nimbus G satellite

    Science.gov (United States)

    Russell, P. B.; Mccormick, M. P.; Mcmaster, L. R.; Pepin, T. J.; Chu, W. P.; Swissler, T. J.

    1978-01-01

    The SAM-2 will fly aboard the Nimbus-G satellite for launch in the fall of 1978 and measure stratospheric vertical profiles of aerosol extinction in high latitude bands. The plan gives details of the location and times for the simultaneous satellite/correlative measurements for the nominal launch time, the rationale and choice of the correlative sensors, their characteristics and expected accuracies, and the conversion of their data to extinction profiles. The SAM-2 expected instrument performance and data inversion results are presented. Various atmospheric models representative of polar stratospheric aerosols are used in the SAM-2 and correlative sensor analyses.

  12. Samsø Energy Vision 2030

    DEFF Research Database (Denmark)

    Mathiesen, Brian Vad; Hansen, Kenneth; Ridjan, Iva

    The purpose of this report is to investigate potential scenarios for converting Samsø into 100% renewable energy supply in 2030 with focus on local electricity and biomass resources. Firstly, a 2013 reference scenario is established to investigate whether Samsø is 100% renewable today. Next, scen...

  13. Cognition and procedure representational requirements for predictive human performance models

    Science.gov (United States)

    Corker, K.

    1992-01-01

    Models and modeling environments for human performance are becoming significant contributors to early system design and analysis procedures. Issues of levels of automation, physical environment, informational environment, and manning requirements are being addressed by such man/machine analysis systems. The research reported here investigates the close interaction between models of human cognition and models that described procedural performance. We describe a methodology for the decomposition of aircrew procedures that supports interaction with models of cognition on the basis of procedures observed; that serves to identify cockpit/avionics information sources and crew information requirements; and that provides the structure to support methods for function allocation among crew and aiding systems. Our approach is to develop an object-oriented, modular, executable software representation of the aircrew, the aircraft, and the procedures necessary to satisfy flight-phase goals. We then encode in a time-based language, taxonomies of the conceptual, relational, and procedural constraints among the cockpit avionics and control system and the aircrew. We have designed and implemented a goals/procedures hierarchic representation sufficient to describe procedural flow in the cockpit. We then execute the procedural representation in simulation software and calculate the values of the flight instruments, aircraft state variables and crew resources using the constraints available from the relationship taxonomies. The system provides a flexible, extensible, manipulative and executable representation of aircrew and procedures that is generally applicable to crew/procedure task-analysis. The representation supports developed methods of intent inference, and is extensible to include issues of information requirements and functional allocation. We are attempting to link the procedural representation to models of cognitive functions to establish several intent inference methods

  14. Modeling and prediction of surgical procedure times

    NARCIS (Netherlands)

    P.S. Stepaniak (Pieter); C. Heij (Christiaan); G. de Vries (Guus)

    2009-01-01

    textabstractAccurate prediction of medical operation times is of crucial importance for cost efficient operation room planning in hospitals. This paper investigates the possible dependence of procedure times on surgeon factors like age, experience, gender, and team composition. The effect of these f

  15. Automation of One-Loop Calculations with GoSam: Present Status and Future Outlook

    CERN Document Server

    Cullen, Gavin; Heinrich, Gudrun; Luisoni, Gionata; Mastrolia, Pierpaolo; Ossola, Giovanni; Reiter, Thomas; Tramontano, Francesco

    2011-01-01

    In this presentation, we describe the GoSam (Golem/Samurai) framework for the automated computation of multi-particle scattering amplitudes at the one-loop level. The amplitudes are generated analytically in terms of Feynman diagrams, and can be evaluated using either D-dimensional integrand reduction or tensor decomposition. GoSam can be used to compute one-loop corrections to Standard Model (QCD and EW) processes, and it is ready to link generic model files for theories Beyond SM. We show the main features of GoSam through its application to several examples of different complexity.

  16. A procedure for Building Product Models

    DEFF Research Database (Denmark)

    Hvam, Lars

    1999-01-01

    , easily adaptable concepts and methods from data modeling (object oriented analysis) and domain modeling (product modeling). The concepts are general and can be used for modeling all types of specifications in the different phases in the product life cycle. The modeling techniques presented have been...

  17. Improvement and Validation of Weld Residual Stress Modelling Procedure

    Energy Technology Data Exchange (ETDEWEB)

    Zang, Weilin; Gunnars, Jens (Inspecta Technology AB, Stockholm (Sweden)); Dong, Pingsha; Hong, Jeong K. (Center for Welded Structures Research, Battelle, Columbus, OH (United States))

    2009-06-15

    The objective of this work is to identify and evaluate improvements for the residual stress modelling procedure currently used in Sweden. There is a growing demand to eliminate any unnecessary conservatism involved in residual stress assumptions. The study was focused on the development and validation of an improved weld residual stress modelling procedure, by taking advantage of the recent advances in residual stress modelling and stress measurement techniques. The major changes applied in the new weld residual stress modelling procedure are: - Improved procedure for heat source calibration based on use of analytical solutions. - Use of an isotropic hardening model where mixed hardening data is not available. - Use of an annealing model for improved simulation of strain relaxation in re-heated material. The new modelling procedure is demonstrated to capture the main characteristics of the through thickness stress distributions by validation to experimental measurements. Three austenitic stainless steel butt-welds cases are analysed, covering a large range of pipe geometries. From the cases it is evident that there can be large differences between the residual stresses predicted using the new procedure, and the earlier procedure or handbook recommendations. Previously recommended profiles could give misleading fracture assessment results. The stress profiles according to the new procedure agree well with the measured data. If data is available then a mixed hardening model should be used

  18. Procedures for Geometric Data Reduction in Solid Log Modelling

    Science.gov (United States)

    Luis G. Occeña; Wenzhen Chen; Daniel L. Schmoldt

    1995-01-01

    One of the difficulties in solid log modelling is working with huge data sets, such as those that come from computed axial tomographic imaging. Algorithmic procedures are described in this paper that have successfully reduced data without sacrificing modelling integrity.

  19. Quality Control Guidelines for SAM Chemical Methods

    Science.gov (United States)

    Learn more about quality control guidelines and recommendations for the analysis of samples using the chemistry methods listed in EPA's Selected Analytical Methods for Environmental Remediation and Recovery (SAM).

  20. Quality Control Guidelines for SAM Biotoxin Methods

    Science.gov (United States)

    Learn more about quality control guidelines and recommendations for the analysis of samples using the pathogen methods listed in EPA's Selected Analytical Methods for Environmental Remediation and Recovery (SAM).

  1. Quality Control Guidelines for SAM Radiochemical Methods

    Science.gov (United States)

    Learn more about quality control guidelines and recommendations for the analysis of samples using the radiochemistry methods listed in EPA's Selected Analytical Methods for Environmental Remediation and Recovery (SAM).

  2. Quality Control Guidelines for SAM Pathogen Methods

    Science.gov (United States)

    Learn more about quality control guidelines and recommendations for the analysis of samples using the biotoxin methods listed in EPA's Selected Analytical Methods for Environmental Remediation and Recovery (SAM).

  3. Discovery of charmed particles : Sam Ting

    CERN Multimedia

    1974-01-01

    The great physics event of the year was the discovery of charmed particles in the USA. One of the co-discoverers, Sam Ting, was at CERN involved in an ISR experiment and described the discovery to a packed auditorium.

  4. Power mos devices: structures and modelling procedures

    Energy Technology Data Exchange (ETDEWEB)

    Rossel, P.; Charitat, G.; Tranduc, H.; Morancho, F.; Moncoqut

    1997-05-01

    In this survey, the historical evolution of power MOS transistor structures is presented and currently used devices are described. General considerations on current and voltage capabilities are discussed and configurations of popular structures are given. A synthesis of different modelling approaches proposed last three years is then presented, including analytical solutions, for basic electrical parameters such as threshold voltage, on-resistance, saturation and quasi-saturation effects, temperature influence and voltage handling capability. The numerical solutions of basic semiconductor devices is then briefly reviewed along with some typical problems which can be solved this way. A compact circuit modelling method is finally explained with emphasis on dynamic behavior modelling

  5. A procedure for Applying a Maturity Model to Process Improvement

    Directory of Open Access Journals (Sweden)

    Elizabeth Pérez Mergarejo

    2014-09-01

    Full Text Available A maturity model is an evolutionary roadmap for implementing the vital practices from one or moredomains of organizational process. The use of the maturity models is poor in the Latin-Americancontext. This paper presents a procedure for applying the Process and Enterprise Maturity Modeldeveloped by Michael Hammer [1]. The procedure is divided into three steps: Preparation, Evaluationand Improvement plan. The Hammer´s maturity model joint to the proposed procedure can be used byorganizations to improve theirs process, involving managers and employees.

  6. Multi-block and path modelling procedures

    DEFF Research Database (Denmark)

    Høskuldsson, Agnar

    2008-01-01

    The author has developed a unified theory of path and multi-block modelling of data. The data blocks are arranged in a directional path. Each data block can lead to one or more data blocks. It is assumed that there is given a collection of input data blocks. Each of them is supposed to describe one...

  7. Inference-based procedural modeling of solids

    KAUST Repository

    Biggers, Keith

    2011-11-01

    As virtual environments become larger and more complex, there is an increasing need for more automated construction algorithms to support the development process. We present an approach for modeling solids by combining prior examples with a simple sketch. Our algorithm uses an inference-based approach to incrementally fit patches together in a consistent fashion to define the boundary of an object. This algorithm samples and extracts surface patches from input models, and develops a Petri net structure that describes the relationship between patches along an imposed parameterization. Then, given a new parameterized line or curve, we use the Petri net to logically fit patches together in a manner consistent with the input model. This allows us to easily construct objects of varying sizes and configurations using arbitrary articulation, repetition, and interchanging of parts. The result of our process is a solid model representation of the constructed object that can be integrated into a simulation-based environment. © 2011 Elsevier Ltd. All rights reserved.

  8. Preparation of metal-SAM-dendrimer-SAM-metal junctions by supramolecular metal transfer printing

    NARCIS (Netherlands)

    Nijhuis, Christian A.; ter Maat, Jurjen; Bisri, Satria Z.; Weusthof, Marcel H. H.; Salm, Cora; Schmitz, Jurriaan; Ravoo, Bart Jan; Huskensa, Jurriaan; Reinhoudt, David N.

    2008-01-01

    Metal-self-assembled monolayer (SAM)-dendrimer-SAM-metal junctions were prepared by a new type of metal transfer printing (mTP) that uses multiple beta-cyclodextrin (beta CD) host-guest interactions between a metal-coated stamp decorated with a monolayer of host molecules and a substrate which is fu

  9. Preparation of metal-SAM-dendrimer-SAM-metal junctions by supramolecular metal transfer printing

    NARCIS (Netherlands)

    Nijhuis, Christian A.; Maat, ter Jurjen; Bisri, Satria Z.; Weusthof, Marcel H.H.; Salm, Cora; Schmitz, Jurriaan; Ravoo, Bart Jan; Huskens, Jurriaan; Reinhoudt, David N.

    2008-01-01

    Metal-self-assembled monolayer (SAM)-dendrimer-SAM-metal junctions were prepared by a new type of metal transfer printing (mTP) that uses multiple ß-cyclodextrin (ßCD) host-guest interactions between a metal-coated stamp decorated with a monolayer of host molecules and a substrate which is functiona

  10. Design Transformations for Rule-based Procedural Modeling

    KAUST Repository

    Lienhard, Stefan

    2017-05-24

    We introduce design transformations for rule-based procedural models, e.g., for buildings and plants. Given two or more procedural designs, each specified by a grammar, a design transformation combines elements of the existing designs to generate new designs. We introduce two technical components to enable design transformations. First, we extend the concept of discrete rule switching to rule merging, leading to a very large shape space for combining procedural models. Second, we propose an algorithm to jointly derive two or more grammars, called grammar co-derivation. We demonstrate two applications of our work: we show that our framework leads to a larger variety of models than previous work, and we show fine-grained transformation sequences between two procedural models.

  11. Benchmark Simulation of Natural Circulation Cooling System with Salt Working Fluid Using SAM

    Energy Technology Data Exchange (ETDEWEB)

    Ahmed, K. K.; Scarlat, R. O.; Hu, R.

    2017-09-03

    Liquid salt-cooled reactors, such as the Fluoride Salt-Cooled High-Temperature Reactor (FHR), offer passive decay heat removal through natural circulation using Direct Reactor Auxiliary Cooling System (DRACS) loops. The behavior of such systems should be well-understood through performance analysis. The advanced system thermal-hydraulics tool System Analysis Module (SAM) from Argonne National Laboratory has been selected for this purpose. The work presented here is part of a larger study in which SAM modeling capabilities are being enhanced for the system analyses of FHR or Molten Salt Reactors (MSR). Liquid salt thermophysical properties have been implemented in SAM, as well as properties of Dowtherm A, which is used as a simulant fluid for scaled experiments, for future code validation studies. Additional physics modules to represent phenomena specific to salt-cooled reactors, such as freezing of coolant, are being implemented in SAM. This study presents a useful first benchmark for the applicability of SAM to liquid salt-cooled reactors: it provides steady-state and transient comparisons for a salt reactor system. A RELAP5-3D model of the Mark-1 Pebble-Bed FHR (Mk1 PB-FHR), and in particular its DRACS loop for emergency heat removal, provides steady state and transient results for flow rates and temperatures in the system that are used here for code-to-code comparison with SAM. The transient studied is a loss of forced circulation with SCRAM event. To the knowledge of the authors, this is the first application of SAM to FHR or any other molten salt reactors. While building these models in SAM, any gaps in the code’s capability to simulate such systems are identified and addressed immediately, or listed as future improvements to the code.

  12. Comparisons of Estimation Procedures for Nonlinear Multilevel Models

    Directory of Open Access Journals (Sweden)

    Ali Reza Fotouhi

    2003-05-01

    Full Text Available We introduce General Multilevel Models and discuss the estimation procedures that may be used to fit multilevel models. We apply the proposed procedures to three-level binary data generated in a simulation study. We compare the procedures by two criteria, Bias and efficiency. We find that the estimates of the fixed effects and variance components are substantially and significantly biased using Longford's Approximation and Goldstein's Generalized Least Squares approaches by two software packages VARCL and ML3. These estimates are not significantly biased and are very close to real values when we use Markov Chain Monte Carlo (MCMC using Gibbs sampling or Nonparametric Maximum Likelihood (NPML approach. The Gaussian Quadrature (GQ approach, even with small number of mass points results in consistent estimates but computationally problematic. We conclude that the MCMC and the NPML approaches are the recommended procedures to fit multilevel models.

  13. The impact of a ligand binding on strand migration in the SAM-I riboswitch.

    Directory of Open Access Journals (Sweden)

    Wei Huang

    Full Text Available Riboswitches sense cellular concentrations of small molecules and use this information to adjust synthesis rates of related metabolites. Riboswitches include an aptamer domain to detect the ligand and an expression platform to control gene expression. Previous structural studies of riboswitches largely focused on aptamers, truncating the expression domain to suppress conformational switching. To link ligand/aptamer binding to conformational switching, we constructed models of an S-adenosyl methionine (SAM-I riboswitch RNA segment incorporating elements of the expression platform, allowing formation of an antiterminator (AT helix. Using Anton, a computer specially developed for long timescale Molecular Dynamics (MD, we simulated an extended (three microseconds MD trajectory with SAM bound to a modeled riboswitch RNA segment. Remarkably, we observed a strand migration, converting three base pairs from an antiterminator (AT helix, characteristic of the transcription ON state, to a P1 helix, characteristic of the OFF state. This conformational switching towards the OFF state is observed only in the presence of SAM. Among seven extended trajectories with three starting structures, the presence of SAM enhances the trend towards the OFF state for two out of three starting structures tested. Our simulation provides a visual demonstration of how a small molecule (<500 MW binding to a limited surface can trigger a large scale conformational rearrangement in a 40 kDa RNA by perturbing the Free Energy Landscape. Such a mechanism can explain minimal requirements for SAM binding and transcription termination for SAM-I riboswitches previously reported experimentally.

  14. Basis for ligand discrimination between ON and OFF state riboswitch conformations: the case of the SAM-I riboswitch.

    Science.gov (United States)

    Boyapati, Vamsi Krishna; Huang, Wei; Spedale, Jessica; Aboul-Ela, Fareed

    2012-06-01

    Riboswitches are RNA elements that bind to effector ligands and control gene expression. Most consist of two domains. S-Adenosyl Methionine (SAM) binds the aptamer domain of the SAM-I riboswitch and induces conformational changes in the expression domain to form an intrinsic terminator (transcription OFF state). Without SAM the riboswitch forms the transcription ON state, allowing read-through transcription. The mechanistic link between the SAM/aptamer recognition event and subsequent secondary structure rearrangement by the riboswitch is unclear. We probed for those structural features of the Bacillus subtilis yitJ SAM-I riboswitch responsible for discrimination between the ON and OFF states by SAM. We designed SAM-I riboswitch RNA segments forming "hybrid" structures of the ON and OFF states. The choice of segment constrains the formation of a partial P1 helix, characteristic of the OFF state, together with a partial antiterminator (AT) helix, characteristic of the ON state. For most choices of P1 vs. AT helix lengths, SAM binds with micromolar affinity according to equilibrium dialysis. Mutational analysis and in-line probing confirm that the mode of SAM binding by hybrid structures is similar to that of the aptamer. Altogether, binding measurements and in-line probing are consistent with the hypothesis that when SAM is present, stacking interactions with the AT helix stabilize a partially formed P1 helix in the hybrids. Molecular modeling indicates that continuous stacking between the P1 and the AT helices is plausible with SAM bound. Our findings raise the possibility that conformational intermediates may play a role in ligand-induced aptamer folding.

  15. Sam68 promotes Schwann cell proliferation by enhancing the PI3K/Akt pathway and acts on regeneration after sciatic nerve crush

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Weijie, E-mail: 459586768@qq.com; Liu, Yuxi, E-mail: 924013616@qq.com; Wang, Youhua, E-mail: wyouhua1516@163.com

    2016-05-13

    Sam68 (Src-associated in mitosis of 68 kD), a KH domain RNA-binding protein, is not only important in signaling transduction cascades, but crucial in a variety of cellular processes. Sam68 is reported to be involved in the phospoinositide3-kinase (PI3K) and nuclear factor-kappa B (NF-κB) signaling pathways, and it is closely associated with cell proliferation, RNA metabolism, and tumor progression. However, we know little about the role of Sam68 during peripheral nervous system injury and regeneration. In this study, we investigated the expression of Sam68 and its biological significances in sciatic nerve crush. Interestingly, we found Sam68 had a co-localization with S100 (Schwann cell marker). Moreover, after crush, Sam68 had a spatiotemporal protein expression, which was in parallel with proliferation cell nuclear antigen (PCNA). In vitro, we also observed increased expression of Sam68 during the process of TNF-α-induced Schwann cell proliferation model. Besides, flow cytometry analyses, CCK-8, and EDU were all performed with the purpose of investigating the role of Sam68 in the regulation of Schwann cell proliferation. Even more importantly, we discovered that Sam68 could enhance the phosphorylation of Akt while LY294002 (a PI3K inhibitor) obviously reversed Sam68-induced cell proliferation. Finally, we detected the variance during regeneration progress through the rat walk footprint test. In summary, all these evidences demonstrated that Sam68 might participate in Schwann cell proliferation partially via PI3K/Akt pathway and also regulate regeneration after sciatic nerve crush. -- Highlights: •The dynamic changes and location of Sam68 after sciatic nerve crush. •Sam68 promoted Schwann cell proliferation via PI3K/Akt pathway. •Sam68 modulated functional recovery after sciatic nerve crush.

  16. Probing the nature and resistance of the molecule-electrode contact in SAM-based junctions

    Science.gov (United States)

    Suchand Sangeeth, C. S.; Wan, Albert; Nijhuis, Christian A.

    2015-07-01

    It is challenging to quantify the contact resistance and to determine the nature of the molecule-electrode contacts in molecular two-terminal junctions. Here we show that potentiodynamic and temperature dependent impedance measurements give insights into the nature of the SAM-electrode interface and other bottlenecks of charge transport (the capacitance of the SAM (CSAM) and the resistance of the SAM (RSAM)), unlike DC methods, independently of each other. We found that the resistance of the top-electrode-SAM contact for junctions with the form of AgTS-SCn//GaOx/EGaIn with n = 10, 12, 14, 16 or 18 is bias and temperature independent and hence Ohmic (non-rectifying) in nature, and is orders of magnitude smaller than RSAM. The CSAM and RSAM are independent of the temperature, indicating that the mechanism of charge transport in these SAM-based junctions is coherent tunneling and the charge carrier trapping at the interfaces is negligible.It is challenging to quantify the contact resistance and to determine the nature of the molecule-electrode contacts in molecular two-terminal junctions. Here we show that potentiodynamic and temperature dependent impedance measurements give insights into the nature of the SAM-electrode interface and other bottlenecks of charge transport (the capacitance of the SAM (CSAM) and the resistance of the SAM (RSAM)), unlike DC methods, independently of each other. We found that the resistance of the top-electrode-SAM contact for junctions with the form of AgTS-SCn//GaOx/EGaIn with n = 10, 12, 14, 16 or 18 is bias and temperature independent and hence Ohmic (non-rectifying) in nature, and is orders of magnitude smaller than RSAM. The CSAM and RSAM are independent of the temperature, indicating that the mechanism of charge transport in these SAM-based junctions is coherent tunneling and the charge carrier trapping at the interfaces is negligible. Electronic supplementary information (ESI) available: Detailed experimental procedure, Nyquist

  17. Generic Graph Grammar: A Simple Grammar for Generic Procedural Modelling

    DEFF Research Database (Denmark)

    Christiansen, Asger Nyman; Bærentzen, Jakob Andreas

    2012-01-01

    in a directed cyclic graph. Furthermore, the basic productions are chosen such that Generic Graph Grammar seamlessly combines the capabilities of L-systems to imitate biological growth (to model trees, animals, etc.) and those of split grammars to design structured objects (chairs, houses, etc.). This results......Methods for procedural modelling tend to be designed either for organic objects, which are described well by skeletal structures, or for man-made objects, which are described well by surface primitives. Procedural methods, which allow for modelling of both kinds of objects, are few and usually...

  18. Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch

    Energy Technology Data Exchange (ETDEWEB)

    Montange, R.; Mondragon, E; van Tyne, D; Garst, A; Ceres, P; Batey, R

    2010-01-01

    The SAM-I riboswitch is a cis-acting element of genetic control found in bacterial mRNAs that specifically binds S-adenosylmethionine (SAM). We previously determined the 2.9-{angstrom} X-ray crystal structure of the effector-binding domain of this RNA element, revealing details of RNA-ligand recognition. To improve this structure, variations were made to the RNA sequence to alter lattice contacts, resulting in a 0.5-{angstrom} improvement in crystallographic resolution and allowing for a more accurate refinement of the crystallographic model. The basis for SAM specificity was addressed by a structural analysis of the RNA complexed to S-adenosylhomocysteine (SAH) and sinefungin and by measuring the affinity of SAM and SAH for a series of mutants using isothermal titration calorimetry. These data illustrate the importance of two universally conserved base pairs in the RNA that form electrostatic interactions with the positively charged sulfonium group of SAM, thereby providing a basis for discrimination between SAM and SAH.

  19. Sensitivity Analysis for Multidisciplinary Systems (SAMS)

    Science.gov (United States)

    2016-12-01

    AFRL-RQ-WP-TM-2017-0017 SENSITIVITY ANALYSIS FOR MULTIDISCIPLINARY SYSTEMS (SAMS) Richard D. Snyder Design & Analysis Branch Aerospace Vehicles...for public release. Distribution is unlimited. 1 AFRL-NASA Collaboration Provide economical, accurate sensitivities for multidisciplinary design and... Concept Refinement Technology Development System Development & Demonstration Production & Deployment Operation & Support • Knowledge is most limited

  20. Essay: Physical Review Letters; Sam Goudsmit's Vision.

    Science.gov (United States)

    Adair, Robert K

    2008-01-18

    Sam Goudsmit implemented his vision of converting the Letters section of Physical Review into a distinct journal fifty years ago. Physical Review Letters was designed to publish "only papers that really deserve rapid communication." The new journal became so successful with physicists throughout the world that Physical Review Letters now publishes 3500 Letters per year.

  1. Sam's Journey to "Reach for the Stars"

    Science.gov (United States)

    Mayer, Sue

    2007-01-01

    In this article, the author shares her experiences as a parent of a child with Down syndrome. Although her son Sam's first years were filled with numerous hospitalizations and visits to pediatricians, which she feared would further delay his development, she soon discovered an organization known as the National Association of Child Development…

  2. Structural Basis for Methyl Transfer by a Radical SAM Enzyme

    Energy Technology Data Exchange (ETDEWEB)

    Boal, Amie K.; Grove, Tyler L.; McLaughlin, Monica I.; Yennawar, Neela H.; Booker, Squire J.; Rosenzweig, Amy C. (NWU); (Penn)

    2014-10-02

    The radical S-adenosyl-l-methionine (SAM) enzymes RlmN and Cfr methylate 23S ribosomal RNA, modifying the C2 or C8 position of adenosine 2503. The methyl groups are installed by a two-step sequence involving initial methylation of a conserved Cys residue (RlmN Cys{sup 355}) by SAM. Methyl transfer to the substrate requires reductive cleavage of a second equivalent of SAM. Crystal structures of RlmN and RlmN with SAM show that a single molecule of SAM coordinates the [4Fe-4S] cluster. Residue Cys{sup 355} is S-methylated and located proximal to the SAM methyl group, suggesting the SAM that is involved in the initial methyl transfer binds at the same site. Thus, RlmN accomplishes its complex reaction with structural economy, harnessing the two most important reactivities of SAM within a single site.

  3. Improvement of procedures for evaluating photochemical models. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Tesche, T.W.; Lurmann, F.R.; Roth, P.M.; Georgopoulos, P.; Seinfeld, J.H.

    1990-08-01

    The study establishes a set of procedures that should be used by all groups evaluating the performance of a photochemical model application. A set of ten numerical measures are recommended for evaluating a photochemical model's accuracy in predicting ozone concentrations. Nine graphical methods and six investigative simulations are also recommended to give additional insight into model performance. Standards are presented that each modeling study should try to meet. To complement the operational model evaluation procedures, several diagnostic procedures are suggested. The sensitivity of the model to uncertainties in hydrocarbon emission rates and speciation, and other parameters should be assessed. Uncertainty bounds of key input variables and parameters can be propagated through the model to provide estimated uncertainties in the ozone predictions. Comparisons between measurements and predictions of species other than ozone will help ensure that the model is predicting the right ozone for the right reasons. Plotting concentrations residuals (differences) against a variety of variables may give insight into the reasons for poor model performance. Mass flux and balance calculations can identify the relative importance of emissions and transport. The study also identifies testing a model's response to emission changes as the most important research need. Another important area is testing the emissions inventory.

  4. Landing Procedure in Model Ditching Tests of Bf 109

    Science.gov (United States)

    Sottorf, W.

    1949-01-01

    The purpose of the model tests is to clarify the motions in the alighting on water of a land plane. After discussion of the model laws, the test method and test procedure are described. The deceleration-time-diagrams of the landing of a model of the Bf 109 show a high deceleration peek of greater than 20g which can be lowered to 4 to 6g by radiator cowling and brake skid.

  5. Model and Variable Selection Procedures for Semiparametric Time Series Regression

    Directory of Open Access Journals (Sweden)

    Risa Kato

    2009-01-01

    Full Text Available Semiparametric regression models are very useful for time series analysis. They facilitate the detection of features resulting from external interventions. The complexity of semiparametric models poses new challenges for issues of nonparametric and parametric inference and model selection that frequently arise from time series data analysis. In this paper, we propose penalized least squares estimators which can simultaneously select significant variables and estimate unknown parameters. An innovative class of variable selection procedure is proposed to select significant variables and basis functions in a semiparametric model. The asymptotic normality of the resulting estimators is established. Information criteria for model selection are also proposed. We illustrate the effectiveness of the proposed procedures with numerical simulations.

  6. The HSG procedure for modelling integrated urban wastewater systems.

    Science.gov (United States)

    Muschalla, D; Schütze, M; Schroeder, K; Bach, M; Blumensaat, F; Gruber, G; Klepiszewski, K; Pabst, M; Pressl, A; Schindler, N; Solvi, A-M; Wiese, J

    2009-01-01

    Whilst the importance of integrated modelling of urban wastewater systems is ever increasing, there is still no concise procedure regarding how to carry out such modelling studies. After briefly discussing some earlier approaches, the guideline for integrated modelling developed by the Central European Simulation Research Group (HSG - Hochschulgruppe) is presented. This contribution suggests a six-step standardised procedure to integrated modelling. This commences with an analysis of the system and definition of objectives and criteria, covers selection of modelling approaches, analysis of data availability, calibration and validation and also includes the steps of scenario analysis and reporting. Recent research findings as well as experience gained from several application projects from Central Europe have been integrated in this guideline.

  7. Procedural Skills Education – Colonoscopy as a Model

    Directory of Open Access Journals (Sweden)

    Maitreyi Raman

    2008-01-01

    Full Text Available Traditionally, surgical and procedural apprenticeship has been an assumed activity of students, without a formal educational context. With increasing barriers to patient and operating room access such as shorter work week hours for residents, and operating room and endoscopy time at a premium, alternate strategies to maximizing procedural skill development are being considered. Recently, the traditional surgical apprenticeship model has been challenged, with greater emphasis on the need for surgical and procedural skills training to be more transparent and for alternatives to patient-based training to be considered. Colonoscopy performance is a complex psychomotor skill requiring practioners to integrate multiple sensory inputs, and involves higher cortical centres for optimal performance. Colonoscopy skills involve mastery in the cognitive, technical and process domains. In the present review, we propose a model for teaching colonoscopy to the novice trainee based on educational theory.

  8. Vector operations for modelling data-conversion procedures

    Energy Technology Data Exchange (ETDEWEB)

    Rivkin, M.N.

    1992-03-01

    This article presents a set of vector operations that permit effective modelling of operations from extended relational algebra for implementations of variable-construction procedures in data-conversion processors. Vector operations are classified, and test results are given for the ARIUS UP and other popular database management systems for PC`s. 10 refs., 5 figs.

  9. Markov chain decision model for urinary incontinence procedures.

    Science.gov (United States)

    Kumar, Sameer; Ghildayal, Nidhi; Ghildayal, Neha

    2017-03-13

    Purpose Urinary incontinence (UI) is a common chronic health condition, a problem specifically among elderly women that impacts quality of life negatively. However, UI is usually viewed as likely result of old age, and as such is generally not evaluated or even managed appropriately. Many treatments are available to manage incontinence, such as bladder training and numerous surgical procedures such as Burch colposuspension and Sling for UI which have high success rates. The purpose of this paper is to analyze which of these popular surgical procedures for UI is effective. Design/methodology/approach This research employs randomized, prospective studies to obtain robust cost and utility data used in the Markov chain decision model for examining which of these surgical interventions is more effective in treating women with stress UI based on two measures: number of quality adjusted life years (QALY) and cost per QALY. Treeage Pro Healthcare software was employed in Markov decision analysis. Findings Results showed the Sling procedure is a more effective surgical intervention than the Burch. However, if a utility greater than certain utility value, for which both procedures are equally effective, is assigned to persistent incontinence, the Burch procedure is more effective than the Sling procedure. Originality/value This paper demonstrates the efficacy of a Markov chain decision modeling approach to study the comparative effectiveness analysis of available treatments for patients with UI, an important public health issue, widely prevalent among elderly women in developed and developing countries. This research also improves upon other analyses using a Markov chain decision modeling process to analyze various strategies for treating UI.

  10. Dynamics of SAMs in Boundary Lubrication

    Directory of Open Access Journals (Sweden)

    J. Manojlović

    2013-09-01

    Full Text Available Surfactant molecules have some properties responsible for a number ofremarkable phenomena, such as oriented adsorption of surfactants at surfaces and interfaces. The capability to self -assemble into well- defined structures is often seen as being more important than their surface activity. When a surfactant solution is in contact with a solid surface, the surfactant molecules adsorb onto the surface, ideally forming an adsorbed layer of a high order, termed as a self- assembled monolayer (SAM. Many surface properties are influenced bysuch a film, and therefore, SAMs offer the capability to form ordered organic surface coatings, suitable for various applications, such as wetting or corrosion protection. Due to the flexibility in choosing the molecular architecture, organic molecules have many interesting applications, such as biosensors, in Photoelectronics, in controlling water adsorption or boundary lubricant coating. This paper Focuses on cationic surfactants (quaternary ammonium surfactants with some unique properties that are not present in other surfactants.

  11. Drug delivery from therapeutic self-assembled monolayers (T-SAMs) on 316L stainless steel.

    Science.gov (United States)

    Mahapatro, Anil; Johnson, Dave M; Patel, Devang N; Feldman, Marc D; Ayon, Arturo A; Agrawal, C Mauli

    2008-01-01

    Delivery of therapeutic agents from self-assembled monolayers (SAMs) on 316L stainless steel (SS) has been demonstrated as a viable method to deliver drugs for localized coronary artery stent application. SAMs are highly-ordered, nano-sized molecular coatings, adding 1-10 nm thickness to a surface. Hydroxyl terminated alkanethiol SAMs of 11-mercapto-1-undecanol (-OH SAM) were formed on 316L SS with 48 hr immersion in ethanolic solutions. Attachment of ibuprofen (a model drug) to the functional SAMs was carried out in toluene for 5 hrs at 60 degrees C using Novozume-435 as a biocatalyst. SAM formation and subsequent attachment of ibuprofen was characterized collectively using X-ray photoelectron spectroscopy (XPS), Fourier transform infrared spectroscopy (FTIR), and contact angle (CA) measure-ments. The quantitative in vitro release of ibuprofen into a "physiological" buffer solution was characterized using reverse phase HPLC. Drug release kinetics showed that 14.1 microg of ibuprofen eluted over a period of 35 days with 2.7microg being eluted in the first day and the remaining being eluted over a period of 35 days. The drug release kinetics showed an increase in ibuprofen elution that occurred during first 14 days (2.7microg in 1 day to 9.5 microg in 14 days), following which there was a decrease in the rate of elution. Thus, functional SAMs on 316L SS could be used as tethers for drug attachment and could serve as a drug delivery mechanism from stainless steel implants such as coronary artery stents.

  12. Resampling procedures to validate dendro-auxometric regression models

    Directory of Open Access Journals (Sweden)

    2009-03-01

    Full Text Available Regression analysis has a large use in several sectors of forest research. The validation of a dendro-auxometric model is a basic step in the building of the model itself. The more a model resists to attempts of demonstrating its groundlessness, the more its reliability increases. In the last decades many new theories, that quite utilizes the calculation speed of the calculators, have been formulated. Here we show the results obtained by the application of a bootsprap resampling procedure as a validation tool.

  13. Model of Procedure Usage – Results from a Qualitative Study to Inform Design of Computer-Based Procedures

    Energy Technology Data Exchange (ETDEWEB)

    Johanna H Oxstrand; Katya L Le Blanc

    2012-07-01

    The nuclear industry is constantly trying to find ways to decrease the human error rate, especially the human errors associated with procedure use. As a step toward the goal of improving procedure use performance, researchers, together with the nuclear industry, have been looking at replacing the current paper-based procedures with computer-based procedure systems. The concept of computer-based procedures is not new by any means; however most research has focused on procedures used in the main control room. Procedures reviewed in these efforts are mainly emergency operating procedures and normal operating procedures. Based on lessons learned for these previous efforts we are now exploring a more unknown application for computer based procedures - field procedures, i.e. procedures used by nuclear equipment operators and maintenance technicians. The Idaho National Laboratory, the Institute for Energy Technology, and participants from the U.S. commercial nuclear industry are collaborating in an applied research effort with the objective of developing requirements and specifications for a computer-based procedure system to be used by field operators. The goal is to identify the types of human errors that can be mitigated by using computer-based procedures and how to best design the computer-based procedures to do this. The underlying philosophy in the research effort is “Stop – Start – Continue”, i.e. what features from the use of paper-based procedures should we not incorporate (Stop), what should we keep (Continue), and what new features or work processes should be added (Start). One step in identifying the Stop – Start – Continue was to conduct a baseline study where affordances related to the current usage of paper-based procedures were identified. The purpose of the study was to develop a model of paper based procedure use which will help to identify desirable features for computer based procedure prototypes. Affordances such as note taking, markups

  14. GoSam. A program for automated one-loop calculations

    Energy Technology Data Exchange (ETDEWEB)

    Cullen, G. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany); Greiner, N.; Heinrich, G.; Reiter, T. [Max-Planck-Institut fuer Physik, Muenchen (Germany); Luisoni, G. [Durham Univ. (United Kingdom). Inst. for Particle Physics Phenomenology; Mastrolia, P. [Max-Planck-Institut fuer Physik, Muenchen (Germany); Padua Univ. (Italy). Dipt. di Fisica; Ossola, G. [City Univ. of New York, NY (United States). New York City College of Technology; Tramontano, F. [European Organization for Nuclear Research (CERN), Geneva (Switzerland)

    2011-11-15

    The program package GoSam is presented which aims at the automated calculation of one-loop amplitudes for multi-particle processes. The amplitudes are generated in terms of Feynman diagrams and can be reduced using either D-dimensional integrand-level decomposition or tensor reduction, or a combination of both. GoSam can be used to calculate one-loop corrections to both QCD and electroweak theory, and model files for theories Beyond the Standard Model can be linked as well. A standard interface to programs calculating real radiation is also included. The flexibility of the program is demonstrated by various examples. (orig.)

  15. Modeling a radiotherapy clinical procedure: total body irradiation.

    Science.gov (United States)

    Esteban, Ernesto P; García, Camille; De La Rosa, Verónica

    2010-09-01

    Leukemia, non-Hodgkin's lymphoma, and neuroblastoma patients prior to bone marrow transplants may be subject to a clinical radiotherapy procedure called total body irradiation (TBI). To mimic a TBI procedure, we modified the Jones model of bone marrow radiation cell kinetics by adding mutant and cancerous cell compartments. The modified Jones model is mathematically described by a set of n + 4 differential equations, where n is the number of mutations before a normal cell becomes a cancerous cell. Assuming a standard TBI radiotherapy treatment with a total dose of 1320 cGy fractionated over four days, two cases were considered. In the first, repopulation and sub-lethal repair in the different cell populations were not taken into account (model I). In this case, the proposed modified Jones model could be solved in a closed form. In the second, repopulation and sub-lethal repair were considered, and thus, we found that the modified Jones model could only be solved numerically (model II). After a numerical and graphical analysis, we concluded that the expected results of TBI treatment can be mimicked using model I. Model II can also be used, provided the cancer repopulation factor is less than the normal cell repopulation factor. However, model I has fewer free parameters compared to model II. In either case, our results are in agreement that the standard dose fractionated over four days, with two irradiations each day, provides the needed conditioning treatment prior to bone marrow transplant. Partial support for this research was supplied by the NIH-RISE program, the LSAMP-Puerto Rico program, and the University of Puerto Rico-Humacao.

  16. Recreation of architectural structures using procedural modeling based on volumes

    Directory of Open Access Journals (Sweden)

    Santiago Barroso Juan

    2013-11-01

    Full Text Available While the procedural modeling of buildings and other architectural structures has evolved very significantly in recent years, there is noticeable absence of high-level tools that allow a designer, an artist or an historian, creating important buildings or architectonic structures in a particular city. In this paper we present a tool for creating buildings in a simple and clear, following rules that use the language and methodology of creating their own buildings, and hiding the user the algorithmic details of the creation of the model.

  17. Obituary: Sam Roweis (1972-2010)

    Science.gov (United States)

    Hogg, David

    2011-12-01

    Computer scientist and statistical astronomer Sam Roweis took his own life in New York City on 2010 January 12. He was a brilliant and accomplished researcher in the field of machine learning, and a strong advocate for the use of computational statistics for automating discovery and scientific data analysis. He made several important contributions to astronomy and was working on adaptive astronomical data analysis at the time of his death. Roweis obtained his PhD in 1999 from the California Institute of Technology, where he worked on a remarkable range of subjects, including DNA computing, modeling of dynamical systems, signal processing, and speech recognition. During this time he unified and clarified some of the most important data analysis techniques, including Principal Component Analysis, Hidden Markov Models, and Expectation Maximization. His work was aimed at making data analysis and modeling faster, but also better justified scientifically. The last years of his PhD were spent in Princeton NJ, where he came in contact with a young generation of cosmologists thinking about microwave background and large-scale structure data. In a postdoc at University College London, Roweis co-created the Locally Linear Embedding (LLE) algorithm; a simple but flexible technique for mapping a large data set onto a low-dimensional manifold. The LLE paper obtained more than 2700 citations in 9 years, launched a new sub-field of machine learning known as "manifold learning," and inspired work in data visualization, search, and applied mathematics. In 2001, Roweis took a faculty job at the University of Toronto Computer Science Department. He continued working on data analysis methods that have probabilistic interpretation and therefore scientific applicability, but at the same time have good performance on large data sets. He was awarded a Sloan Fellowship, a Canada Research Chair, and a fellowship of the Canadian Institute for Advanced Research, among other honors and awards

  18. Procedural Modeling for Rapid-Prototyping of Multiple Building Phases

    Science.gov (United States)

    Saldana, M.; Johanson, C.

    2013-02-01

    RomeLab is a multidisciplinary working group at UCLA that uses the city of Rome as a laboratory for the exploration of research approaches and dissemination practices centered on the intersection of space and time in antiquity. In this paper we present a multiplatform workflow for the rapid-prototyping of historical cityscapes through the use of geographic information systems, procedural modeling, and interactive game development. Our workflow begins by aggregating archaeological data in a GIS database. Next, 3D building models are generated from the ArcMap shapefiles in Esri CityEngine using procedural modeling techniques. A GIS-based terrain model is also adjusted in CityEngine to fit the building elevations. Finally, the terrain and city models are combined in Unity, a game engine which we used to produce web-based interactive environments which are linked to the GIS data using keyhole markup language (KML). The goal of our workflow is to demonstrate that knowledge generated within a first-person virtual world experience can inform the evaluation of data derived from textual and archaeological sources, and vice versa.

  19. AFM-assisted fabrication of thiol SAM pattern with alternating quantified surface potential

    Directory of Open Access Journals (Sweden)

    Simons Janet

    2011-01-01

    Full Text Available Abstract Thiol self-assembled monolayers (SAMs are widely used in many nano- and bio-technology applications. We report a new approach to create and characterize a thiol SAMs micropattern with alternating charges on a flat gold-coated substrate using atomic force microscopy (AFM and Kelvin probe force microscopy (KPFM. We produced SAMs-patterns made of alternating positively charged, negatively charged, and hydrophobic-terminated thiols by an automated AFM-assisted manipulation, or nanografting. We show that these thiol patterns possess only small topographical differences as revealed by AFM, and distinguished differences in surface potential (20-50 mV, revealed by KPFM. The pattern can be helpful in the development of biosensor technologies, specifically for selective binding of biomolecules based on charge and hydrophobicity, and serve as a model for creating surfaces with quantified alternating surface potential distribution.

  20. Human cystathionine β-synthase (CBS) contains two classes of binding sites for S-adenosylmethionine (SAM): complex regulation of CBS activity and stability by SAM.

    Science.gov (United States)

    Pey, Angel L; Majtan, Tomas; Sanchez-Ruiz, Jose M; Kraus, Jan P

    2013-01-01

    CBS (cystathionine β-synthase) is a multidomain tetrameric enzyme essential in the regulation of homocysteine metabolism, whose activity is enhanced by the allosteric regulator SAM (S-adenosylmethionine). Missense mutations in CBS are the major cause of inherited HCU (homocystinuria). In the present study we apply a novel approach based on a combination of calorimetric methods, functional assays and kinetic modelling to provide structural and energetic insight into the effects of SAM on the stability and activity of WT (wild-type) CBS and seven HCU-causing mutants. We found two sets of SAM-binding sites in the C-terminal regulatory domain with different structural and energetic features: a high affinity set of two sites, probably involved in kinetic stabilization of the regulatory domain, and a low affinity set of four sites, which are involved in the enzyme activation. We show that the regulatory domain displays a low kinetic stability in WT CBS, which is further decreased in many HCU-causing mutants. We propose that the SAM-induced stabilization may play a key role in modulating steady-state levels of WT and mutant CBS in vivo. Our strategy may be valuable for understanding ligand effects on proteins with a complex architecture and their role in human genetic diseases and for the development of novel pharmacological strategies.

  1. Preparation of metal-SAM-dendrimer-SAM-metal junctions by supramolecular metal transfer printing

    NARCIS (Netherlands)

    Nijhuis, C.A.; Maat, ter J.; Bisri, S.Z.; Weusthof, M.H.H.; Salm, C.; Schmitz, J.; Ravoo, B.J.; Huskens, J.; Reinhoudt, D.N.

    2008-01-01

    Metal–self-assembled monolayer (SAM)–dendrimer–SAM–metal junctions were prepared by a new type of metal transfer printing (mTP) that uses multiple -cyclodextrin (CD) host–guest interactions between a metal-coated stamp decorated with a monolayer of host molecules and a substrate which is functionali

  2. General Quality Control (QC) Guidelines for SAM Methods

    Science.gov (United States)

    Learn more about quality control guidelines and recommendations for the analysis of samples using the methods listed in EPA's Selected Analytical Methods for Environmental Remediation and Recovery (SAM).

  3. SOAR Adaptive Module (SAM): Seeing Improvement with a UV Laser

    Science.gov (United States)

    Tokovinin, Andrei; Cantarutti, Rolando; Tighe, Roberto; Schurter, Patricio; Martinez, Manuel; Thomas, Sandrine; van der Bliek, Nicole

    2016-12-01

    The adaptive module of the 4.1 m SOAR telescope, SOAR Adaptive Module (SAM), corrects ground-layer turbulence using an ultraviolet laser guide star. It has been commissioned in 2013 and it is in regular science operation since 2014. SAM works with the CCD imager covering a 3‧ field or with the speckle camera. It operates routinely and stably, delivering resolution in the I band equal to the free-atmosphere seeing. This paper describes the SAM system as a whole, providing essential reference for its users and technical information of interest to instrumentalists. Operation of the instrument, its performance, and science projects done with SAM so far are reviewed.

  4. SOAR Adaptive Module (SAM): seeing improvement with a UV laser

    CERN Document Server

    Tokovinin, Andrei; Tighe, Roberto; Schurter, Patricio; Martinez, Manuel; Thomas, Sandrine; van der Bliek, Nicole

    2016-01-01

    The adaptive module of the 4.1-m SOAR telescope, SAM, corrects ground-layer turbulence using a UV laser guide star. It has been commissioned in 2013 and it is in regular science operation since 2014. SAM works with the CCD imager covering a 3' field or with the speckle camera. It operates routinely and stably, delivering resolution in the I band equal to the free-atmosphere seeing. This paper describes the SAM system as a whole, providing essential reference for its users and technical information of interest to instrumentalists. Operation of the instrument, its performance, and science projects done with SAM so far are reviewed.

  5. a Procedural Solution to Model Roman Masonry Structures

    Science.gov (United States)

    Cappellini, V.; Saleri, R.; Stefani, C.; Nony, N.; De Luca, L.

    2013-07-01

    The paper will describe a new approach based on the development of a procedural modelling methodology for archaeological data representation. This is a custom-designed solution based on the recognition of the rules belonging to the construction methods used in roman times. We have conceived a tool for 3D reconstruction of masonry structures starting from photogrammetric surveying. Our protocol considers different steps. Firstly we have focused on the classification of opus based on the basic interconnections that can lead to a descriptive system used for their unequivocal identification and design. Secondly, we have chosen an automatic, accurate, flexible and open-source photogrammetric pipeline named Pastis Apero Micmac - PAM, developed by IGN (Paris). We have employed it to generate ortho-images from non-oriented images, using a user-friendly interface implemented by CNRS Marseille (France). Thirdly, the masonry elements are created in parametric and interactive way, and finally they are adapted to the photogrammetric data. The presented application, currently under construction, is developed with an open source programming language called Processing, useful for visual, animated or static, 2D or 3D, interactive creations. Using this computer language, a Java environment has been developed. Therefore, even if the procedural modelling reveals an accuracy level inferior to the one obtained by manual modelling (brick by brick), this method can be useful when taking into account the static evaluation on buildings (requiring quantitative aspects) and metric measures for restoration purposes.

  6. Halomethane production in plants: Structure of the biosynthetic SAM-dependent halide methyltransferase from Arabidopsis thaliana**

    Science.gov (United States)

    Schmidberger, Jason W.; James, Agata B.; Edwards, Robert; Naismith, James H.; O’Hagan, David

    2012-01-01

    A product structure of the halomethane producing enzyme in plants (Arabidopsis thaliana) is reported and a model for presentation of chloride/bromide ion to the methyl group of S-adenosyl-L-methionine (SAM) is presented to rationalise nucleophilic halide attack for halomethane production, gaseous natural products that are produced globally. PMID:20376845

  7. Lumping procedure for a kinetic model of catalytic naphtha reforming

    Directory of Open Access Journals (Sweden)

    H. M. Arani

    2009-12-01

    Full Text Available A lumping procedure is developed for obtaining kinetic and thermodynamic parameters of catalytic naphtha reforming. All kinetic and deactivation parameters are estimated from industrial data and thermodynamic parameters are calculated from derived mathematical expressions. The proposed model contains 17 lumps that include the C6 to C8+ hydrocarbon range and 15 reaction pathways. Hougen-Watson Langmuir-Hinshelwood type reaction rate expressions are used for kinetic simulation of catalytic reactions. The kinetic parameters are benchmarked with several sets of plant data and estimated by the SQP optimization method. After calculation of deactivation and kinetic parameters, plant data are compared with model predictions and only minor deviations between experimental and calculated data are generally observed.

  8. Procedures and Methods of Digital Modeling in Representation Didactics

    Science.gov (United States)

    La Mantia, M.

    2011-09-01

    At the Bachelor degree course in Engineering/Architecture of the University "La Sapienza" of Rome, the courses of Design and Survey, in addition to considering the learning of methods of representation, the application of descriptive geometry and survey, in order to expand the vision and spatial conception of the student, pay particular attention to the use of information technology for the preparation of design and survey drawings, achieving their goals through an educational path of "learning techniques, procedures and methods of modeling architectural structures." The fields of application involved two different educational areas: the analysis and that of survey, both from the acquisition of the given metric (design or survey) to the development of three-dimensional virtual model.

  9. Learning curve estimation in medical devices and procedures: hierarchical modeling.

    Science.gov (United States)

    Govindarajulu, Usha S; Stillo, Marco; Goldfarb, David; Matheny, Michael E; Resnic, Frederic S

    2017-07-30

    In the use of medical device procedures, learning effects have been shown to be a critical component of medical device safety surveillance. To support their estimation of these effects, we evaluated multiple methods for modeling these rates within a complex simulated dataset representing patients treated by physicians clustered within institutions. We employed unique modeling for the learning curves to incorporate the learning hierarchy between institution and physicians and then modeled them within established methods that work with hierarchical data such as generalized estimating equations (GEE) and generalized linear mixed effect models. We found that both methods performed well, but that the GEE may have some advantages over the generalized linear mixed effect models for ease of modeling and a substantially lower rate of model convergence failures. We then focused more on using GEE and performed a separate simulation to vary the shape of the learning curve as well as employed various smoothing methods to the plots. We concluded that while both hierarchical methods can be used with our mathematical modeling of the learning curve, the GEE tended to perform better across multiple simulated scenarios in order to accurately model the learning effect as a function of physician and hospital hierarchical data in the use of a novel medical device. We found that the choice of shape used to produce the 'learning-free' dataset would be dataset specific, while the choice of smoothing method was negligibly different from one another. This was an important application to understand how best to fit this unique learning curve function for hierarchical physician and hospital data. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

  10. Predictive models of procedural human supervisory control behavior

    Science.gov (United States)

    Boussemart, Yves

    Human supervisory control systems are characterized by the computer-mediated nature of the interactions between one or more operators and a given task. Nuclear power plants, air traffic management and unmanned vehicles operations are examples of such systems. In this context, the role of the operators is typically highly proceduralized due to the time and mission-critical nature of the tasks. Therefore, the ability to continuously monitor operator behavior so as to detect and predict anomalous situations is a critical safeguard for proper system operation. In particular, such models can help support the decision J]l8king process of a supervisor of a team of operators by providing alerts when likely anomalous behaviors are detected By exploiting the operator behavioral patterns which are typically reinforced through standard operating procedures, this thesis proposes a methodology that uses statistical learning techniques in order to detect and predict anomalous operator conditions. More specifically, the proposed methodology relies on hidden Markov models (HMMs) and hidden semi-Markov models (HSMMs) to generate predictive models of unmanned vehicle systems operators. Through the exploration of the resulting HMMs in two distinct single operator scenarios, the methodology presented in this thesis is validated and shown to provide models capable of reliably predicting operator behavior. In addition, the use of HSMMs on the same data scenarios provides the temporal component of the predictions missing from the HMMs. The final step of this work is to examine how the proposed methodology scales to more complex scenarios involving teams of operators. Adopting a holistic team modeling approach, both HMMs and HSMMs are learned based on two team-based data sets. The results show that the HSMMs can provide valuable timing information in the single operator case, whereas HMMs tend to be more robust to increased team complexity. In addition, this thesis discusses the

  11. A Multi-objective Procedure for Efficient Regression Modeling

    CERN Document Server

    Sinha, Ankur; Kuosmanen, Timo

    2012-01-01

    Variable selection is recognized as one of the most critical steps in statistical modeling. The problems encountered in engineering and social sciences are commonly characterized by over-abundance of explanatory variables, non-linearities and unknown interdependencies between the regressors. An added difficulty is that the analysts may have little or no prior knowledge on the relative importance of the variables. To provide a robust method for model selection, this paper introduces a technique called the Multi-objective Genetic Algorithm for Variable Selection (MOGA-VS) which provides the user with an efficient set of regression models for a given data-set. The algorithm considers the regression problem as a two objective task, where the purpose is to choose those models over the other which have less number of regression coefficients and better goodness of fit. In MOGA-VS, the model selection procedure is implemented in two steps. First, we generate the frontier of all efficient or non-dominated regression m...

  12. Economic Analysis Case Studies of Battery Energy Storage with SAM

    Energy Technology Data Exchange (ETDEWEB)

    DiOrio, Nicholas [National Renewable Energy Lab. (NREL), Golden, CO (United States); Dobos, Aron [National Renewable Energy Lab. (NREL), Golden, CO (United States); Janzou, Steven [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2015-11-01

    Interest in energy storage has continued to increase as states like California have introduced mandates and subsidies to spur adoption. This energy storage includes customer sited behind-the-meter storage coupled with photovoltaics (PV). This paper presents case study results from California and Tennessee, which were performed to assess the economic benefit of customer-installed systems. Different dispatch strategies, including manual scheduling and automated peak-shaving were explored to determine ideal ways to use the storage system to increase the system value and mitigate demand charges. Incentives, complex electric tariffs, and site specific load and PV data were used to perform detailed analysis. The analysis was performed using the free, publically available System Advisor Model (SAM) tool. We find that installation of photovoltaics with a lithium-ion battery system priced at $300/kWh in Los Angeles under a high demand charge utility rate structure and dispatched using perfect day-ahead forecasting yields a positive net-present value, while all other scenarios cost the customer more than the savings accrued. Different dispatch strategies, including manual scheduling and automated peak-shaving were explored to determine ideal ways to use the storage system to increase the system value and mitigate demand charges. Incentives, complex electric tariffs, and site specific load and PV data were used to perform detailed analysis. The analysis was performed using the free, publically available System Advisor Model (SAM) tool. We find that installation of photovoltaics with a lithium-ion battery system priced at $300/kWh in Los Angeles under a high demand charge utility rate structure and dispatched using perfect day-ahead forecasting yields a positive net-present value, while all other scenarios cost the customer more than the savings accrued.

  13. Providing output of DIRAC-SAM jobs to the IT-based SAM-Nagios framework

    CERN Document Server

    Volkl, Valentin

    2013-01-01

    Information available on LHCb grid sites in the SAM-Nagios monitor- ing framework - gathered mainly through functional tests - has been sup- plemented with results from LHCbDIRAC SAMJobs published by means of message client newly integrated in LHCbDIRAC. These are displayed as a new metric org.lhcb.DiracTest-lhcb giving additional debug in- formation to system administrators and influencing reports on grid site performances in the future

  14. Developing Physiologic Models for Emergency Medical Procedures Under Microgravity

    Science.gov (United States)

    Parker, Nigel; O'Quinn, Veronica

    2012-01-01

    Several technological enhancements have been made to METI's commercial Emergency Care Simulator (ECS) with regard to how microgravity affects human physiology. The ECS uses both a software-only lung simulation, and an integrated mannequin lung that uses a physical lung bag for creating chest excursions, and a digital simulation of lung mechanics and gas exchange. METI s patient simulators incorporate models of human physiology that simulate lung and chest wall mechanics, as well as pulmonary gas exchange. Microgravity affects how O2 and CO2 are exchanged in the lungs. Procedures were also developed to take into affect the Glasgow Coma Scale for determining levels of consciousness by varying the ECS eye-blinking function to partially indicate the level of consciousness of the patient. In addition, the ECS was modified to provide various levels of pulses from weak and thready to hyper-dynamic to assist in assessing patient conditions from the femoral, carotid, brachial, and pedal pulse locations.

  15. Experiences with a procedure for modeling product knowledge

    DEFF Research Database (Denmark)

    Hansen, Benjamin Loer; Hvam, Lars

    2002-01-01

    This paper presents experiences with a procedure for building configurators. The procedure has been used in an American company producing custom-made precision air conditioning equipment. The paper describes experiences with the use of the procedure and experiences with the project in general....

  16. Sam68 is a novel marker for aggressive neuroblastoma

    Directory of Open Access Journals (Sweden)

    Zhao X

    2013-12-01

    Full Text Available Xiaohong Zhao,1,* Zuoqing Li,2,* Benfu He,3 Juncheng Liu,2 Suisheng Li,2 Li Zhou,2 Cuiling Pan,2 Zhe Yu,4 Zhe Xu21State Key Laboratory of Oncology in Southern China, Department of Experimental Research, Cancer Center, Sun Yat-sen University, 2Department of Pediatric Surgery, First Affiliated Hospital of Sun Yat-sen University, 3Oncology Department, PLA421 Hospital, 4Laura Biotech Co, Ltd, Guangzhou, People’s Republic of China*These authors contributed equally to this workBackground: Neuroblastoma (NB is the most common solid extracranial tumor in children. However, the molecular mechanism and progression of NB is largely unknown, and unfortunately, the prognosis is poor. Src-associated in mitosis with a molecular weight of 68 kDa (Sam68 is associated with carcinogenesis and neurogenesis. The present study aimed to investigate the clinical and prognostic significance of Sam68 in NB.Methods: The expression of Sam68 in immortalized normal epithelial cells, NB cell lines, and in four cases of paired NB tissue and adjacent normal tissue from the same patient was examined using Western blotting, reverse transcription-polymerase chain reaction (PCR and real-time reverse transcription-PCR. The proliferation of NB cells was determined by 3-(4,5-dimethylthiazol-2-yl-2,5-diphenyltetrazolium bromide (MTT assay. Furthermore, Sam68 protein expression was analyzed in 90 NB cases characterized as clinicopathological using immunohistochemistry. Statistical analyses were applied to evaluate the diagnostic value and associations of Sam68 with clinical parameters.Results: Western blotting and reverse transcription-PCR showed that the expression level of Sam68 was markedly higher in NB cell lines than in the immortalized normal epithelial cells at both messenger RNA and protein levels. The MTT assay revealed that Sam68 expression supported proliferation of NB cells. Sam68 expression levels were significantly up-regulated in tumor tissues in comparison to the

  17. Modified uterine allotransplantation and immunosuppression procedure in the sheep model.

    Directory of Open Access Journals (Sweden)

    Li Wei

    Full Text Available OBJECTIVE: To develop an orthotopic, allogeneic, uterine transplantation technique and an effective immunosuppressive protocol in the sheep model. METHODS: In this pilot study, 10 sexually mature ewes were subjected to laparotomy and total abdominal hysterectomy with oophorectomy to procure uterus allografts. The cold ischemic time was 60 min. End-to-end vascular anastomosis was performed using continuous, non-interlocking sutures. Complete tissue reperfusion was achieved in all animals within 30 s after the vascular re-anastomosis, without any evidence of arterial or venous thrombosis. The immunosuppressive protocol consisted of tacrolimus, mycophenolate mofetil and methylprednisolone tablets. Graft viability was assessed by transrectal ultrasonography and second-look laparotomy at 2 and 4 weeks, respectively. RESULTS: Viable uterine tissue and vascular patency were observed on transrectal ultrasonography and second-look laparotomy. Histological analysis of the graft tissue (performed in one ewe revealed normal tissue architecture with a very subtle inflammatory reaction but no edema or stasis. CONCLUSION: We have developed a modified procedure that allowed us to successfully perform orthotopic, allogeneic, uterine transplantation in sheep, whose uterine and vascular anatomy (apart from the bicornuate uterus is similar to the human anatomy, making the ovine model excellent for human uterine transplant research.

  18. SAM Gcms Chromatography Performed at Mars : Elements of Interpretation

    Science.gov (United States)

    Szopa, C.; Coll, P. J.; Buch, A.; François, P.; Cabane, M.; Coscia, D.; Teinturier, S.; Navarro-Gonzalez, R.; Glavin, D. P.; Freissinet, C.; Mahaffy, P. R.

    2013-12-01

    The characterisation of the chemical and mineralogical composition of regolith samples collected with the Curiosity rover is a primary objective of the SAM experiment. These data should provide essential clues on the past habitability of Gale crater. Interpretation of the data collected after SAM pyrolysis evolved gas analysis (EGA) and gas chromatography mass spectrometry (GC-MS) experiments on the first soil samples collected by MSL at the Rocknest Aeolian Deposit in Gale Crater has been challenging due to the concomitant presence in the ovens of an oxychlorine phase present in the samples, and a derivatization agent coming from the SAM wet chemistry experiment (Glavin et al., 2013). Moreover, accurate identification and quantification, in the SAM EGA mode, of volatiles released from the heated sample, or generated by reactions occurring in the SAM pyrolysis oven, is also difficult for a few compounds due to evolution over similar temperature ranges and overlap of their MS signatures. Hence, the GC analyses, coupled with MS, enabled the separation and identification and quantification of most of the volatile compounds detected. These results can have been obtained through tests and calibration done with GC individual spare components and with the SAM testbed. This paper will present a view of the interpretation of the chromatograms obtained when analyzing the Rocknest and John Klein solid samples delivered to SAM, on sols 96 and 199 respectively, supported by laboratory calibrations.

  19. Crystal structures of the SAM-III/S[subscript MK] riboswitch reveal the SAM-dependent translation inhibition mechanism

    Energy Technology Data Exchange (ETDEWEB)

    Lu, C.; Smith, A.M.; Fuchs, R.T.; Ding, F.; Rajashankar, K.; Henkin, T.M.; Ke, A. (Cornell); (OSU)

    2010-01-07

    Three distinct classes of S-adenosyl-L-methionine (SAM)-responsive riboswitches have been identified that regulate bacterial gene expression at the levels of transcription attenuation or translation inhibition. The SMK box (SAM-III) translational riboswitch has been identified in the SAM synthetase gene in members of the Lactobacillales. Here we report the 2.2-{angstrom} crystal structure of the Enterococcus faecalis SMK box riboswitch. The Y-shaped riboswitch organizes its conserved nucleotides around a three-way junction for SAM recognition. The Shine-Dalgarno sequence, which is sequestered by base-pairing with the anti-Shine-Dalgarno sequence in response to SAM binding, also directly participates in SAM recognition. The riboswitch makes extensive interactions with the adenosine and sulfonium moieties of SAM but does not appear to recognize the tail of the methionine moiety. We captured a structural snapshot of the SMK box riboswitch sampling the near-cognate ligand S-adenosyl-L-homocysteine (SAH) in which SAH was found to adopt an alternative conformation and fails to make several key interactions.

  20. Procedure for identifying models for the heat dynamics of buildings

    DEFF Research Database (Denmark)

    Bacher, Peder; Madsen, Henrik

    This report describes a new method for obtaining detailed information about the heat dynamics of a building using frequent reading of the heat consumption. Such a procedure is considered to be of uttermost importance as a key procedure for using readings from smart meters, which is expected...... to be installed in almost all buildings in the coming years....

  1. Vibrational Stark Effect of the Electric-Field Reporter 4-Mercaptobenzonitrile as a Tool for Investigating Electrostatics at Electrode/SAM/Solution Interfaces

    Directory of Open Access Journals (Sweden)

    Peter Hildebrandt

    2012-06-01

    Full Text Available 4-mercaptobenzonitrile (MBN in self-assembled monolayers (SAMs on Au and Ag electrodes was studied by surface enhanced infrared absorption and Raman spectroscopy, to correlate the nitrile stretching frequency with the local electric field exploiting the vibrational Stark effect (VSE. Using MBN SAMs in different metal/SAM interfaces, we sorted out the main factors controlling the nitrile stretching frequency, which comprise, in addition to external electric fields, the metal-MBN bond, the surface potential, and hydrogen bond interactions. On the basis of the linear relationships between the nitrile stretching and the electrode potential, an electrostatic description of the interfacial potential distribution is presented that allows for determining the electric field strengths on the SAM surface, as well as the effective potential of zero-charge of the SAM-coated metal. Comparing this latter quantity with calculated values derived from literature data, we note a very good agreement for Au/MBN but distinct deviations for Ag/MBN which may reflect either the approximations and simplifications of the model or the uncertainty in reported structural parameters for Ag/MBN. The present electrostatic model consistently explains the electric field strengths for MBN SAMs on Ag and Au as well as for thiophenol and mercaptohexanoic acid SAMs with MBN incorporated as a VSE reporter.

  2. Sam D. Hamilton Noxubee National Wildlife Refuge: Comprehensive Conservation Plan

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This Comprehensive Conservation Plan (CCP) was written to guide management on Sam D. Hamilton Noxubee NWR for the next 15 years. This plan outlines the Refuge vision...

  3. Sam Wagstaffi unustatud kired / Ahto Külvet

    Index Scriptorium Estoniae

    Külvet, Ahto

    2008-01-01

    Dokumentaalfilm "Black, White & Gray: Sam Wagstaff and Robert Mapplethorpe" : autor ja režissöör James Crump : Ameerika Ühendriigid 2007. Filmi näidati filminädala "Art in America" raames Tallinnas

  4. Kuula. Kuu artist Sam Sparro. Kuu plaat / Mart Juur

    Index Scriptorium Estoniae

    Juur, Mart, 1964-

    2008-01-01

    Artistist Sam Sparrost. Heliplaatidest: "Sex And The City" Original Motion Picture Soundtrack, "Maestro: Blue Note Trip", Melvin/Soo/Remmel/Julm "Geografix", Alanis Morrisette "Flavors Of Entanglement", Guillemots "Red"

  5. Sam Wagstaffi unustatud kired / Ahto Külvet

    Index Scriptorium Estoniae

    Külvet, Ahto

    2008-01-01

    Dokumentaalfilm "Black, White & Gray: Sam Wagstaff and Robert Mapplethorpe" : autor ja režissöör James Crump : Ameerika Ühendriigid 2007. Filmi näidati filminädala "Art in America" raames Tallinnas

  6. NACO/SAM observations of sources at the Galactic Center

    CERN Document Server

    Sanchez-Bermudez, J; Alberdi, A; Pott, J U

    2012-01-01

    Sparse aperture masking (SAM) interferometry combined with Adaptive Optics (AO) is a technique that is uniquely suited to investigate structures near the diffraction limit of large telescopes. The strengths of the technique are a robust calibration of the Point Spread Function (PSF) while maintaining a relatively high dynamic range. We used SAM+AO observations to investigate the circumstellar environment of several bright sources with infrared excess in the central parsec of the Galaxy. For our observations, unstable atmospheric conditions as well as significant residuals after the background subtraction presented serious problems for the standard approach of calibrating SAM data via interspersed observations of reference stars. We circumvented these difficulties by constructing a synthesized calibrator directly from sources within the field-of-view. When observing crowded fields, this novel method can boost the efficiency of SAM observations because it renders interspersed calibrator observations unnecessary...

  7. Kuula. Kuu artist Sam Sparro. Kuu plaat / Mart Juur

    Index Scriptorium Estoniae

    Juur, Mart, 1964-

    2008-01-01

    Artistist Sam Sparrost. Heliplaatidest: "Sex And The City" Original Motion Picture Soundtrack, "Maestro: Blue Note Trip", Melvin/Soo/Remmel/Julm "Geografix", Alanis Morrisette "Flavors Of Entanglement", Guillemots "Red"

  8. SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

    Directory of Open Access Journals (Sweden)

    Flemington Erik

    2011-01-01

    Full Text Available Abstract Background Next Generation Sequencing (NGS technology generates tens of millions of short reads for each DNA/RNA sample. A key step in NGS data analysis is the short read alignment of the generated sequences to a reference genome. Although storing alignment information in the Sequence Alignment/Map (SAM or Binary SAM (BAM format is now standard, biomedical researchers still have difficulty accessing this information. Results We have developed a Graphical User Interface (GUI software tool named SAMMate. SAMMate allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate also automates some standard procedures in DNA-seq and RNA-seq data analysis. Using either standard or customized annotation files, SAMMate allows users to accurately calculate the short read coverage of genomic intervals. In particular, for RNA-seq data SAMMate can accurately calculate the gene expression abundance scores for customized genomic intervals using short reads originating from both exons and exon-exon junctions. Furthermore, SAMMate can quickly calculate a whole-genome signal map at base-wise resolution allowing researchers to solve an array of bioinformatics problems. Finally, SAMMate can export both a wiggle file for alignment visualization in the UCSC genome browser and an alignment statistics report. The biological impact of these features is demonstrated via several case studies that predict miRNA targets using short read alignment information files. Conclusions With just a few mouse clicks, SAMMate will provide biomedical researchers easy access to important alignment information stored in SAM/BAM files. Our software is constantly updated and will greatly facilitate the downstream analysis of NGS data. Both the source code and the GUI executable are freely available under the GNU General Public License at http://sammate.sourceforge.net.

  9. Cloning and Analysis of Genes SAMS From Glycine soja

    Institute of Scientific and Technical Information of China (English)

    FAN Jinping; BAI Xi; LI Yong; JI Wei; WANG Xi; ZHU Yanming

    2008-01-01

    S-adenosylmethionine (SAM) plays important role in trans-methyl reactions. Under the condition of drought (30%PEG),salinity (200 mmol·L-1 NaCI) and low temperature (4℃),total RNA was extracted from the leaf and the first strand of eDNA was synthesized with reverse transcription.S-adenosylmethionine synthetase gene (SAMS gene) was amplified by PeR with the first strand eDNA as template and a pair of primers which was based on constructed ESTs sequence.Full-length SAMS gene sequence was obtained by BLAST comparison. According to the analysis, completed sequence of SAMS gene was integrality.The sequence of the SAMS gene was 1185 bp in length with an opening reading frame (ORF) encoding 394 amino acids.The cDNA sequence showed a significant homology to the SAM genes from Phaseolus lunatus (89%),Medicago sativa (85%).A prokaryotie expression vectors based on pET-32b had been constructed and prokaryotie expression was analyzed in order to lay a strong foundation for resist adversity function analysis through situation of genie expression analysis.

  10. Using GOMS models and hypertext to create representations of medical procedures for online display

    Science.gov (United States)

    Gugerty, Leo; Halgren, Shannon; Gosbee, John; Rudisill, Marianne

    1991-01-01

    This study investigated two methods to improve organization and presentation of computer-based medical procedures. A literature review suggested that the GOMS (goals, operators, methods, and selecton rules) model can assist in rigorous task analysis, which can then help generate initial design ideas for the human-computer interface. GOMS model are hierarchical in nature, so this study also investigated the effect of hierarchical, hypertext interfaces. We used a 2 x 2 between subjects design, including the following independent variables: procedure organization - GOMS model based vs. medical-textbook based; navigation type - hierarchical vs. linear (booklike). After naive subjects studies the online procedures, measures were taken of their memory for the content and the organization of the procedures. This design was repeated for two medical procedures. For one procedure, subjects who studied GOMS-based and hierarchical procedures remembered more about the procedures than other subjects. The results for the other procedure were less clear. However, data for both procedures showed a 'GOMSification effect'. That is, when asked to do a free recall of a procedure, subjects who had studies a textbook procedure often recalled key information in a location inconsistent with the procedure they actually studied, but consistent with the GOMS-based procedure.

  11. In vivo CH3(CH2)11SAu SAM electrodes in the beating heart: in situ analytical studies relevant to pacemakers and interstitial biosensors.

    Science.gov (United States)

    Chou, Howard A; Zavitz, Daniel H; Ovadia, Marc

    2003-01-01

    To study in vivo modification of the SAM equivalent circuit when a highly ordered SAM is used as a bioelectrode, dodecanethiolate SAM-Au intramuscular electrodes were studied in living rat heart in a challenging in situ perfused rat model by impedance spectroscopy, cyclic voltammetry, and neutron activation analysis (NAA). The SAM layer experienced disintegration in vivo biological system, as NAA detected the presence of Au atoms that had leached into the surrounding living tissue. Therefore, the underlying Au surface became exposed during biological implant. Study by impedance spectroscopy, however, revealed perfect capacitive behavior for the SAM, similar to in vitro behavior. Electrodes showed a pure capacitive Nyquist plot with 86.1-89.4 degrees near-vertical line segments as the equivalent circuit locus, as for a parallel plate capacitor. Impedance magnitude varied linearly with 1/omega excluding diffusionally limited ionic charge transport. There was no diffusional conductive element Z(W infinity ) or spatially confined Warburg impedance Z(D). The effect of in vivo exposure of a highly ordered SAM is a 'sealing over' effect of new defects by the binding of proteinaceous or lipid species in the biological milieu, a fact of significance for SAM electrodes used either as pacemaker electrodes or as a platform for in vivo biosensors.

  12. A visual graphic/haptic rendering model for hysteroscopic procedures.

    Science.gov (United States)

    Lim, Fabian; Brown, Ian; McColl, Ryan; Seligman, Cory; Alsaraira, Amer

    2006-03-01

    Hysteroscopy is an extensively popular option in evaluating and treating women with infertility. The procedure utilises an endoscope, inserted through the vagina and cervix to examine the intra-uterine cavity via a monitor. The difficulty of hysteroscopy from the surgeon's perspective is the visual spatial perception of interpreting 3D images on a 2D monitor, and the associated psychomotor skills in overcoming the fulcrum-effect. Despite the widespread use of this procedure, current qualified hysteroscopy surgeons have not been trained the fundamentals through an organised curriculum. The emergence of virtual reality as an educational tool for this procedure, and for other endoscopic procedures, has undoubtedly raised interests. The ultimate objective is for the inclusion of virtual reality training as a mandatory component for gynaecologic endoscopy training. Part of this process involves the design of a simulator, encompassing the technical difficulties and complications associated with the procedure. The proposed research examines fundamental hysteroscopy factors, current training and accreditation, and proposes a hysteroscopic simulator design that is suitable for educating and training.

  13. A Comparison of Exposure Control Procedures in CATs Using the 3PL Model

    Science.gov (United States)

    Leroux, Audrey J.; Lopez, Myriam; Hembry, Ian; Dodd, Barbara G.

    2013-01-01

    This study compares the progressive-restricted standard error (PR-SE) exposure control procedure to three commonly used procedures in computerized adaptive testing, the randomesque, Sympson-Hetter (SH), and no exposure control methods. The performance of these four procedures is evaluated using the three-parameter logistic model under the…

  14. Procedure to Determine Coefficients for the Sandia Array Performance Model (SAPM)

    Energy Technology Data Exchange (ETDEWEB)

    King, Bruce Hardison; Hansen, Clifford; Riley, Daniel; Robinson, Charles David; Pratt, Larry

    2016-06-01

    The Sandia Array Performance Model (SAPM), a semi-empirical model for predicting PV system power, has been in use for more than a decade. While several studies have presented comparisons of measurements and analysis results among laboratories, detailed procedures for determining model coefficients have not yet been published. Independent test laboratories must develop in-house procedures to determine SAPM coefficients, which contributes to uncertainty in the resulting models. Here we present a standard procedure for calibrating the SAPM using outdoor electrical and meteorological measurements. Analysis procedures are illustrated with data measured outdoors for a 36-cell silicon photovoltaic module.

  15. Surface engineering and adhesion modification of SAM surfaces of 1-hexanethiol and 1-decanethiol: confining Staphylococcus aureus

    Science.gov (United States)

    Olsen, Morgan; Amroski, Alicia; Calabrese, Joseph; Senevirathne, Reshani; Senevirathne, Indrajith

    2012-02-01

    Engineering surfaces for adhesion and confinement of bacteria is interesting towards development of respective biosensors, and bio machine interfacing. Investigation was focused towards modification of surfaces towards confinement and entrapment of the nonpathogenic strain Staphylococcus aureus or similar pathogenic strains and to study surface engineering. Clean, flat Au(111) on mica surfaces were used for self assembly for Self Assembled Monolayers (SAM). 1-hexanethiol, and 1-decanethiol were used at total 5 mM solutions in varying ratios, in 200 proof Ethanol solution. Resulting SAM layers were investigated for surface corrugation, morphology and structure variation at different thiol ratios. Observations will be discussed, quantitatively and qualitatively. Eventual mixture ratios were so selected towards optimum conditions for confining Staphylococcus aureus as a model system. SAM surfaces were investigated using intermittent contact, noncontact, lateral force and contact modes of Atomic Force Microscopy (AFM).

  16. A Survey of Procedural Methods for Terrain Modelling

    NARCIS (Netherlands)

    Smelik, R.M.; Kraker, J.K. de; Groenewegen, S.A.; Tutenel, T.; Bidarra, R.

    2009-01-01

    Procedural methods are a promising but underused alternative to manual content creation. Commonly heard drawbacks are the randomness of and the lack of control over the output and the absence of integrated solutions, although more recent publications increasingly address these issues. This paper sur

  17. Evaluating procedural modelling for 3D models of informal settlements in urban design activities

    Directory of Open Access Journals (Sweden)

    Victoria Rautenbach

    2015-11-01

    Full Text Available Three-dimensional (3D modelling and visualisation is one of the fastest growing application fields in geographic information science. 3D city models are being researched extensively for a variety of purposes and in various domains, including urban design, disaster management, education and computer gaming. These models typically depict urban business districts (downtown or suburban residential areas. Despite informal settlements being a prevailing feature of many cities in developing countries, 3D models of informal settlements are virtually non-existent. 3D models of informal settlements could be useful in various ways, e.g. to gather information about the current environment in the informal settlements, to design upgrades, to communicate these and to educate inhabitants about environmental challenges. In this article, we described the development of a 3D model of the Slovo Park informal settlement in the City of Johannesburg Metropolitan Municipality, South Africa. Instead of using time-consuming traditional manual methods, we followed the procedural modelling technique. Visualisation characteristics of 3D models of informal settlements were described and the importance of each characteristic in urban design activities for informal settlement upgrades was assessed. Next, the visualisation characteristics of the Slovo Park model were evaluated. The results of the evaluation showed that the 3D model produced by the procedural modelling technique is suitable for urban design activities in informal settlements. The visualisation characteristics and their assessment are also useful as guidelines for developing 3D models of informal settlements. In future, we plan to empirically test the use of such 3D models in urban design projects in informal settlements.

  18. Analysis of generalized Schwarz alternating procedure for domain decomposition

    Energy Technology Data Exchange (ETDEWEB)

    Engquist, B.; Zhao, Hongkai [Univ. of California, Los Angeles, CA (United States)

    1996-12-31

    The Schwartz alternating method(SAM) is the theoretical basis for domain decomposition which itself is a powerful tool both for parallel computation and for computing in complicated domains. The convergence rate of the classical SAM is very sensitive to the overlapping size between each subdomain, which is not desirable for most applications. We propose a generalized SAM procedure which is an extension of the modified SAM proposed by P.-L. Lions. Instead of using only Dirichlet data at the artificial boundary between subdomains, we take a convex combination of u and {partial_derivative}u/{partial_derivative}n, i.e. {partial_derivative}u/{partial_derivative}n + {Lambda}u, where {Lambda} is some {open_quotes}positive{close_quotes} operator. Convergence of the modified SAM without overlapping in a quite general setting has been proven by P.-L.Lions using delicate energy estimates. The important questions remain for the generalized SAM. (1) What is the most essential mechanism for convergence without overlapping? (2) Given the partial differential equation, what is the best choice for the positive operator {Lambda}? (3) In the overlapping case, is the generalized SAM superior to the classical SAM? (4) What is the convergence rate and what does it depend on? (5) Numerically can we obtain an easy to implement operator {Lambda} such that the convergence is independent of the mesh size. To analyze the convergence of the generalized SAM we focus, for simplicity, on the Poisson equation for two typical geometry in two subdomain case.

  19. A Long-Term Memory Competitive Process Model of a Common Procedural Error

    Science.gov (United States)

    2013-08-01

    A novel computational cognitive model explains human procedural error in terms of declarative memory processes. This is an early version of a process ... model intended to predict and explain multiple classes of procedural error a priori. We begin with postcompletion error (PCE) a type of systematic

  20. Transport Simulation Model Calibration with Two-Step Cluster Analysis Procedure

    Directory of Open Access Journals (Sweden)

    Zenina Nadezda

    2015-12-01

    Full Text Available The calibration results of transport simulation model depend on selected parameters and their values. The aim of the present paper is to calibrate a transport simulation model by a two-step cluster analysis procedure to improve the reliability of simulation model results. Two global parameters have been considered: headway and simulation step. Normal, uniform and exponential headway generation models have been selected for headway. Application of two-step cluster analysis procedure to the calibration procedure has allowed reducing time needed for simulation step and headway generation model value selection.

  1. A Procedure for Building Product Models in Intelligent Agent-based OperationsManagement

    DEFF Research Database (Denmark)

    Hvam, Lars; Riis, Jesper; Malis, Martin;

    2003-01-01

    by product models. The next phase includes an analysis of the product assortment, and the set up of a so-called product master. Finally the product model is designed and implemented by using object oriented modelling. The procedure is developed in order to ensure that the product models constructed are fit......This article presents a procedure for building product models to support the specification processes dealing with sales, design of product variants and production preparation. The procedure includes, as the first phase, an analysis and redesign of the business processes that are to be supported...

  2. Comparison of Real World Energy Consumption to Models and Department of Energy Test Procedures

    Energy Technology Data Exchange (ETDEWEB)

    Goetzler, William [Navigant Consulting, Inc., Burlington, MA (United States); Sutherland, Timothy [Navigant Consulting, Inc., Burlington, MA (United States); Kar, Rahul [Navigant Consulting, Inc., Burlington, MA (United States); Foley, Kevin [Navigant Consulting, Inc., Burlington, MA (United States)

    2011-09-01

    This study investigated the real-world energy performance of appliances and equipment as it compared with models and test procedures. The study looked to determine whether the U.S. Department of Energy and industry test procedures actually replicate real world conditions, whether performance degrades over time, and whether installation patterns and procedures differ from the ideal procedures. The study first identified and prioritized appliances to be evaluated. Then, the study determined whether real world energy consumption differed substantially from predictions and also assessed whether performance degrades over time. Finally, the study recommended test procedure modifications and areas for future research.

  3. Sarm1-mediated axon degeneration requires both SAM and TIR interactions.

    Science.gov (United States)

    Gerdts, Josiah; Summers, Daniel W; Sasaki, Yo; DiAntonio, Aaron; Milbrandt, Jeffrey

    2013-08-14

    Axon degeneration is an evolutionarily conserved pathway that eliminates damaged or unneeded axons. Manipulation of this poorly understood pathway may allow treatment of a wide range of neurological disorders. In an RNAi-based screen performed in cultured mouse DRG neurons, we observed strong suppression of injury-induced axon degeneration upon knockdown of Sarm1 [SARM (sterile α-motif-containing and armadillo-motif containing protein)]. We find that a SARM-dependent degeneration program is engaged by disparate neuronal insults: SARM ablation blocks axon degeneration induced by axotomy or vincristine treatment, while SARM acts in parallel with a soma-derived caspase-dependent pathway following trophic withdrawal. SARM is a multidomain protein that associates with neuronal mitochondria. Deletion of the N-terminal mitochondrial localization sequence disrupts SARM mitochondrial localization in neurons but does not alter its ability to promote axon degeneration. In contrast, mutation of either the SAM (sterile α motif) or TIR (Toll-interleukin-1 receptor) domains abolishes the ability of SARM to promote axonal degeneration, while a SARM mutant containing only these domains elicits axon degeneration and nonapoptotic neuronal death even in the absence of injury. Protein-protein interaction studies demonstrate that the SAM domains are necessary and sufficient to mediate SARM-SARM binding. SARM mutants lacking a TIR domain bind full-length SARM and exhibit strong dominant-negative activity. These results indicate that SARM plays an integral role in the dismantling of injured axons and support a model in which SAM-mediated multimerization is necessary for TIR-dependent engagement of a downstream destruction pathway. These findings suggest that inhibitors of SAM and TIR interactions represent therapeutic candidates for blocking pathological axon loss and neuronal cell death.

  4. SAMSVM: A tool for misalignment filtration of SAM-format sequences with support vector machine.

    Science.gov (United States)

    Yang, Jianfeng; Ding, Xiaofan; Sun, Xing; Tsang, Shui-Ying; Xue, Hong

    2015-12-01

    Sequence alignment/map (SAM) formatted sequences [Li H, Handsaker B, Wysoker A et al., Bioinformatics 25(16):2078-2079, 2009.] have taken on a main role in bioinformatics since the development of massive parallel sequencing. However, because misalignment of sequences poses a significant problem in analysis of sequencing data that could lead to false positives in variant calling, the exclusion of misaligned reads is a necessity in analysis. In this regard, the multiple features of SAM-formatted sequences can be treated as vectors in a multi-dimension space to allow the application of a support vector machine (SVM). Applying the LIBSVM tools developed by Chang and Lin [Chang C-C, Lin C-J, ACM Trans Intell Syst Technol 2:1-27, 2011.] as a simple interface for support vector classification, the SAMSVM package has been developed in this study to enable misalignment filtration of SAM-formatted sequences. Cross-validation between two simulated datasets processed with SAMSVM yielded accuracies that ranged from 0.89 to 0.97 with F-scores ranging from 0.77 to 0.94 in 14 groups characterized by different mutation rates from 0.001 to 0.1, indicating that the model built using SAMSVM was accurate in misalignment detection. Application of SAMSVM to actual sequencing data resulted in filtration of misaligned reads and correction of variant calling.

  5. modelling room cooling capacity with fuzzy logic procedure

    African Journals Online (AJOL)

    user

    Modelling with fuzzy logic is an approach to forming ... the way humans think and make judgments [10]. ... artificial intelligence and expert systems [17, 18] to .... from selected cases, human professional computation and the Model predictions.

  6. Native interface of the SAM domain polymer of TEL

    Directory of Open Access Journals (Sweden)

    Bowie James U

    2002-08-01

    Full Text Available Abstract Background TEL is a transcriptional repressor containing a SAM domain that forms a helical polymer. In a number of hematologic malignancies, chromosomal translocations lead to aberrant fusions of TEL-SAM to a variety of other proteins, including many tyrosine kinases. TEL-SAM polymerization results in constitutive activation of the tyrosine kinase domains to which it becomes fused, leading to cell transformation. Thus, inhibitors of TEL-SAM self-association could abrogate transformation in these cells. In previous work, we determined the structure of a mutant TEL-SAM polymer bearing a Val to Glu substitution in center of the subunit interface. It remained unclear how much the mutation affected the architecture of the polymer, however. Results Here we determine the structure of the native polymer interface. To accomplish this goal, we introduced mutations that block polymer extension, producing a heterodimer with a wild-type interface. We find that the structure of the wild-type polymer interface is quite similar to the mutant structure determined previously. With the structure of the native interface, it is possible to evaluate the potential for developing therapeutic inhibitors of the interaction. We find that the interacting surfaces of the protein are relatively flat, containing no obvious pockets for the design of small molecule inhibitors. Conclusion Our results confirm the architecture of the TEL-SAM polymer proposed previously based on a mutant structure. The fact that the interface contains no obvious potential binding pockets suggests that it may be difficult to find small molecule inhibitors to treat malignancies in this way.

  7. Computer-Based Procedures for Field Workers in Nuclear Power Plants: Development of a Model of Procedure Usage and Identification of Requirements

    Energy Technology Data Exchange (ETDEWEB)

    Katya Le Blanc; Johanna Oxstrand

    2012-04-01

    The nuclear industry is constantly trying to find ways to decrease the human error rate, especially the human errors associated with procedure use. As a step toward the goal of improving procedure use performance, researchers, together with the nuclear industry, have been looking at replacing the current paper-based procedures with computer-based procedure systems. The concept of computer-based procedures is not new by any means; however most research has focused on procedures used in the main control room. Procedures reviewed in these efforts are mainly emergency operating procedures and normal operating procedures. Based on lessons learned for these previous efforts we are now exploring a more unknown application for computer based procedures - field procedures, i.e. procedures used by nuclear equipment operators and maintenance technicians. The Idaho National Laboratory and participants from the U.S. commercial nuclear industry are collaborating in an applied research effort with the objective of developing requirements and specifications for a computer-based procedure system to be used by field workers. The goal is to identify the types of human errors that can be mitigated by using computer-based procedures and how to best design the computer-based procedures to do so. This paper describes the development of a Model of Procedure Use and the qualitative study on which the model is based. The study was conducted in collaboration with four nuclear utilities and five research institutes. During the qualitative study and the model development requirements and for computer-based procedures were identified.

  8. Spatial Statistical Procedures to Validate Input Data in Energy Models

    Energy Technology Data Exchange (ETDEWEB)

    Johannesson, G.; Stewart, J.; Barr, C.; Brady Sabeff, L.; George, R.; Heimiller, D.; Milbrandt, A.

    2006-01-01

    Energy modeling and analysis often relies on data collected for other purposes such as census counts, atmospheric and air quality observations, economic trends, and other primarily non-energy related uses. Systematic collection of empirical data solely for regional, national, and global energy modeling has not been established as in the abovementioned fields. Empirical and modeled data relevant to energy modeling is reported and available at various spatial and temporal scales that might or might not be those needed and used by the energy modeling community. The incorrect representation of spatial and temporal components of these data sets can result in energy models producing misleading conclusions, especially in cases of newly evolving technologies with spatial and temporal operating characteristics different from the dominant fossil and nuclear technologies that powered the energy economy over the last two hundred years. Increased private and government research and development and public interest in alternative technologies that have a benign effect on the climate and the environment have spurred interest in wind, solar, hydrogen, and other alternative energy sources and energy carriers. Many of these technologies require much finer spatial and temporal detail to determine optimal engineering designs, resource availability, and market potential. This paper presents exploratory and modeling techniques in spatial statistics that can improve the usefulness of empirical and modeled data sets that do not initially meet the spatial and/or temporal requirements of energy models. In particular, we focus on (1) aggregation and disaggregation of spatial data, (2) predicting missing data, and (3) merging spatial data sets. In addition, we introduce relevant statistical software models commonly used in the field for various sizes and types of data sets.

  9. Spatial Statistical Procedures to Validate Input Data in Energy Models

    Energy Technology Data Exchange (ETDEWEB)

    Lawrence Livermore National Laboratory

    2006-01-27

    Energy modeling and analysis often relies on data collected for other purposes such as census counts, atmospheric and air quality observations, economic trends, and other primarily non-energy-related uses. Systematic collection of empirical data solely for regional, national, and global energy modeling has not been established as in the above-mentioned fields. Empirical and modeled data relevant to energy modeling is reported and available at various spatial and temporal scales that might or might not be those needed and used by the energy modeling community. The incorrect representation of spatial and temporal components of these data sets can result in energy models producing misleading conclusions, especially in cases of newly evolving technologies with spatial and temporal operating characteristics different from the dominant fossil and nuclear technologies that powered the energy economy over the last two hundred years. Increased private and government research and development and public interest in alternative technologies that have a benign effect on the climate and the environment have spurred interest in wind, solar, hydrogen, and other alternative energy sources and energy carriers. Many of these technologies require much finer spatial and temporal detail to determine optimal engineering designs, resource availability, and market potential. This paper presents exploratory and modeling techniques in spatial statistics that can improve the usefulness of empirical and modeled data sets that do not initially meet the spatial and/or temporal requirements of energy models. In particular, we focus on (1) aggregation and disaggregation of spatial data, (2) predicting missing data, and (3) merging spatial data sets. In addition, we introduce relevant statistical software models commonly used in the field for various sizes and types of data sets.

  10. Using CV-GLUE procedure in analysis of wetland model predictive uncertainty.

    Science.gov (United States)

    Huang, Chun-Wei; Lin, Yu-Pin; Chiang, Li-Chi; Wang, Yung-Chieh

    2014-07-01

    This study develops a procedure that is related to Generalized Likelihood Uncertainty Estimation (GLUE), called the CV-GLUE procedure, for assessing the predictive uncertainty that is associated with different model structures with varying degrees of complexity. The proposed procedure comprises model calibration, validation, and predictive uncertainty estimation in terms of a characteristic coefficient of variation (characteristic CV). The procedure first performed two-stage Monte-Carlo simulations to ensure predictive accuracy by obtaining behavior parameter sets, and then the estimation of CV-values of the model outcomes, which represent the predictive uncertainties for a model structure of interest with its associated behavior parameter sets. Three commonly used wetland models (the first-order K-C model, the plug flow with dispersion model, and the Wetland Water Quality Model; WWQM) were compared based on data that were collected from a free water surface constructed wetland with paddy cultivation in Taipei, Taiwan. The results show that the first-order K-C model, which is simpler than the other two models, has greater predictive uncertainty. This finding shows that predictive uncertainty does not necessarily increase with the complexity of the model structure because in this case, the more simplistic representation (first-order K-C model) of reality results in a higher uncertainty in the prediction made by the model. The CV-GLUE procedure is suggested to be a useful tool not only for designing constructed wetlands but also for other aspects of environmental management.

  11. [The emphases and basic procedures of genetic counseling in psychotherapeutic model].

    Science.gov (United States)

    Zhang, Yuan-Zhi; Zhong, Nanbert

    2006-11-01

    The emphases and basic procedures of genetic counseling are all different with those in old models. In the psychotherapeutic model, genetic counseling will not only focus on counselees' genetic disorders and birth defects, but also their psychological problems. "Client-centered therapy" termed by Carl Rogers plays an important role in genetic counseling process. The basic procedures of psychotherapeutic model of genetic counseling include 7 steps: initial contact, introduction, agendas, inquiry of family history, presenting information, closing the session and follow-up.

  12. A Bidirectional Coupling Procedure Applied to Multiscale Respiratory Modeling.

    Science.gov (United States)

    Kuprat, A P; Kabilan, S; Carson, J P; Corley, R A; Einstein, D R

    2013-07-01

    In this study, we present a novel multiscale computational framework for efficiently linking multiple lower-dimensional models describing the distal lung mechanics to imaging-based 3D computational fluid dynamics (CFD) models of the upper pulmonary airways in order to incorporate physiologically appropriate outlet boundary conditions. The framework is an extension of the Modified Newton's Method with nonlinear Krylov accelerator developed by Carlson and Miller [1, 2, 3]. Our extensions include the retention of subspace information over multiple timesteps, and a special correction at the end of a timestep that allows for corrections to be accepted with verified low residual with as little as a single residual evaluation per timestep on average. In the case of a single residual evaluation per timestep, the method has zero additional computational cost compared to uncoupled or unidirectionally coupled simulations. We expect these enhancements to be generally applicable to other multiscale coupling applications where timestepping occurs. In addition we have developed a "pressure-drop" residual which allows for stable coupling of flows between a 3D incompressible CFD application and another (lower-dimensional) fluid system. We expect this residual to also be useful for coupling non-respiratory incompressible fluid applications, such as multiscale simulations involving blood flow. The lower-dimensional models that are considered in this study are sets of simple ordinary differential equations (ODEs) representing the compliant mechanics of symmetric human pulmonary airway trees. To validate the method, we compare the predictions of hybrid CFD-ODE models against an ODE-only model of pulmonary airflow in an idealized geometry. Subsequently, we couple multiple sets of ODEs describing the distal lung to an imaging-based human lung geometry. Boundary conditions in these models consist of atmospheric pressure at the mouth and intrapleural pressure applied to the multiple sets

  13. A bidirectional coupling procedure applied to multiscale respiratory modeling

    Science.gov (United States)

    Kuprat, A. P.; Kabilan, S.; Carson, J. P.; Corley, R. A.; Einstein, D. R.

    2013-07-01

    In this study, we present a novel multiscale computational framework for efficiently linking multiple lower-dimensional models describing the distal lung mechanics to imaging-based 3D computational fluid dynamics (CFDs) models of the upper pulmonary airways in order to incorporate physiologically appropriate outlet boundary conditions. The framework is an extension of the modified Newton's method with nonlinear Krylov accelerator developed by Carlson and Miller [1], Miller [2] and Scott and Fenves [3]. Our extensions include the retention of subspace information over multiple timesteps, and a special correction at the end of a timestep that allows for corrections to be accepted with verified low residual with as little as a single residual evaluation per timestep on average. In the case of a single residual evaluation per timestep, the method has zero additional computational cost compared to uncoupled or unidirectionally coupled simulations. We expect these enhancements to be generally applicable to other multiscale coupling applications where timestepping occurs. In addition we have developed a "pressure-drop" residual which allows for stable coupling of flows between a 3D incompressible CFD application and another (lower-dimensional) fluid system. We expect this residual to also be useful for coupling non-respiratory incompressible fluid applications, such as multiscale simulations involving blood flow. The lower-dimensional models that are considered in this study are sets of simple ordinary differential equations (ODEs) representing the compliant mechanics of symmetric human pulmonary airway trees. To validate the method, we compare the predictions of hybrid CFD-ODE models against an ODE-only model of pulmonary airflow in an idealized geometry. Subsequently, we couple multiple sets of ODEs describing the distal lung to an imaging-based human lung geometry. Boundary conditions in these models consist of atmospheric pressure at the mouth and intrapleural

  14. Simulated SAM A-scans on multilayer MEMS components

    DEFF Research Database (Denmark)

    Janting, Jakob; Petersen, Dirch Hjorth; Greisen, Christoffer

    2002-01-01

    A spreadsheet program for simulation of Scanning Acoustic Microscopy (SAM) A-scans on multilayer structures has been developed. Using this program, structure variations in samples can be analysed better. Further samples can be prepared to get optimal signal for enhanced failure and materials anal...

  15. Ensuring GRID resource availability with the SAM framework in LHCb

    CERN Document Server

    Closier, J; Santinelli, R

    2008-01-01

    The LHCb experiment has chosen to use the SAM framework (Service Availability Monitoring Environment from EGEE-II) [1] make extensive tests of the LHCb environment at all the accessible grid resources. The availability and the proper definition of the local Computing and Storage Elements, user interfaces as well as the WLCG software environment are checked. The SAM framework is also used to pre-install the LHCb applications in the shared software area provided by each site. The deployment of the LHCb applications is based on a python tool developed inside the experiment. It is used for software management including incremental installation of interdependent packages and clean package removal. After the application software is installed a validation test of the whole MC chain is run. According to the results of the experiment specific SAM tests, the sites are (re)integrated into the LHCb production system managed by DIRAC [2]. The possibility of automated dynamic site certification using the SAM test suite is ...

  16. ISO19770-1:2012 SAM process guidance

    CERN Document Server

    Canavan, Rory

    2012-01-01

    The pocket guide offers a concise summary of the principles of software asset management as conveyed by ISO 19770-1: 2012, and provides advice and guidance on how to kick-start your own SAM programme - something the Standard alone doesn't offer.

  17. Social Activity Method (SAM): A Fractal Language for Mathematics

    Science.gov (United States)

    Dowling, Paul

    2013-01-01

    In this paper I shall present and develop my organisational language, "social activity method" (SAM), and illustrate some of its applications. I shall introduce a new scheme for "modes of recontextualisation" that enables the analysis of the ways in which one activity--which might be school mathematics or social research or any…

  18. 77 FR 67813 - Sam Rayburn Dam Project Power Rate

    Science.gov (United States)

    2012-11-14

    ..., Assistant Administrator, Southwestern Power Administration, Department of Energy, Williams Center Tower I... Southwestern Power Administration Sam Rayburn Dam Project Power Rate AGENCY: Southwestern Power Administration, DOE. ACTION: Notice of Rate Order Approving an Extension of Power Rate on an Interim Basis....

  19. Sample Analysis at Mars Organic Contaminants Library (SAM-OCL)

    Science.gov (United States)

    Garcia-Sanchez, Raul; Misra, Prabhakar; Canham, John; Mahaffy, Paul

    2013-04-01

    The Sample Analysis at Mars Organic Contaminants Library (SAM-OCL) was developed as one of several components for the Mars rover mission's Contamination Control Protocol. The purpose of SAM-OCL is to determine the Gas Chromatography-Mass Spectroscopy (GCMS) signals of different materials composing the Mars Science Laboratory rover. In turn, this allows us to determine which GCMS signals originate from terrestrial contamination or rover material outgassing. The GCMS spectral library has several supplemental components, of which its descriptor spreadsheets are the most important, aimed to make SAM-OCL easily and readily accessible to users in and out of the Mars rover mission. One spreadsheet describes the contaminants that can be found in each file, while the other describes the information regarding each file. The library, along with its supplemental materials, is useful from an organizational and practical sense. Through them we are able to organize large volumes of GCMS data while breaking down the components that each material sample is made off. This allows us easy and fast access to information that will be critical when doing analysis in the data that the SAM instrumentation will obtain.

  20. Role of Sam68 in Post-Transcriptional Gene Regulation

    Directory of Open Access Journals (Sweden)

    Flora Sánchez-Jiménez

    2013-11-01

    Full Text Available The STAR family of proteins links signaling pathways to various aspects of post-transcriptional regulation and processing of RNAs. Sam68 belongs to this class of heteronuclear ribonucleoprotein particle K (hnRNP K homology (KH single domain-containing family of RNA-binding proteins that also contains some domains predicted to bind critical components in signal transduction pathways. In response to phosphorylation and other post-transcriptional modifications, Sam68 has been shown to have the ability to link signal transduction pathways to downstream effects regulating RNA metabolism, including transcription, alternative splicing or RNA transport. In addition to its function as a docking protein in some signaling pathways, this prototypic STAR protein has been identified to have a nuclear localization and to take part in the formation of both nuclear and cytosolic multi-molecular complexes such as Sam68 nuclear bodies and stress granules. Coupling with other proteins and RNA targets, Sam68 may play a role in the regulation of differential expression and mRNA processing and translation according to internal and external signals, thus mediating important physiological functions, such as cell death, proliferation or cell differentiation.

  1. Knowledge base development for SAM training tools

    Energy Technology Data Exchange (ETDEWEB)

    Jae, M.S.; Yoo, W.S.; Park, S. S.; Choi, H.K. [Hansung Univ., Seoul (Korea)

    2001-03-01

    Severe accident management can be defined as the use of existing and alternative resources, systems, and actions to prevent or mitigate a core-melt accident in nuclear power plants. TRAIN (Training pRogram for AMP In NPP), developed for training control room staff and the technical group, is introduced in this report. The TRAIN composes of phenomenological knowledge base (KB), accident sequence KB and accident management procedures with AM strategy control diagrams and information needs. This TRAIN might contribute to training them by obtaining phenomenological knowledge of severe accidents, understanding plant vulnerabilities, and solving problems under high stress. 24 refs., 76 figs., 102 tabs. (Author)

  2. A review of mechanisms and modelling procedures for landslide tsunamis

    Science.gov (United States)

    Løvholt, Finn; Harbitz, Carl B.; Glimsdal, Sylfest

    2017-04-01

    Landslides, including volcano flank collapses or volcanically induced flows, constitute the second-most important cause of tsunamis after earthquakes. Compared to earthquakes, landslides are more diverse with respect to how they generation tsunamis. Here, we give an overview over the main tsunami generation mechanisms for landslide tsunamis. In the presentation, a mix of results using analytical models, numerical models, laboratory experiments, and case studies are used to illustrate the diversity, but also to point out some common characteristics. Different numerical modelling techniques for the landslide evolution, and the tsunami generation and propagation, as well as the effect of frequency dispersion, are also briefly discussed. Basic tsunami generation mechanisms for different types of landslides, including large submarine translational landslide, to impulsive submarine slumps, and violent subaerial landslides and volcano flank collapses, are reviewed. The importance of the landslide kinematics is given attention, including the interplay between landslide acceleration, landslide velocity to depth ratio (Froude number) and dimensions. Using numerical simulations, we demonstrate how landslide deformation and retrogressive failure development influence tsunamigenesis. Generation mechanisms for subaerial landslides, are reviewed by means of scaling relations from laboratory experiments and numerical modelling. Finally, it is demonstrated how the different degree of complexity in the landslide tsunamigenesis needs to be reflected by increased sophistication in numerical models.

  3. Spatio-angularly multiplexed (SAM) holographic storage in photorefractive crystals

    Science.gov (United States)

    Tao, Shiquan

    In this thesis a novel multiplexing scheme for dense holographic storage in photorefractive crystals, Spatio-Angular Multiplexing (or SAM), is described in detail. In SAM Fourier transform holograms are formed in spatially overlapping regions of a crystal and are distinguished from one another by using variously angled reference beams. SAM takes advantage of both the high storage density possible using angularly multiplexed volume holograms and also the low crosstalk possible using spatially multiplexed Fourier transform holograms. Compared to pure spatial multiplexing, SAM increases the storage capacity by fully utilising the volume of the storage medium. On the other hand, SAM reduces the number of holograms overlapping any one hologram in a given volume, and so increases the diffraction efficiency achievable as compared to pure angular multiplexing. SAM offers the possibility of incorporating the recorded crystal into a content addressable memory (CAM) system for parallel access of all stored patterns. In order to obtain the maximum diffraction efficiency and signal to noise ratio, the hologram must be replayed by a readout beam incident at the correct angle of readout beam. The optimum angle may be shifted away from the angle used in recording by a ''Bragg-shift", caused (under certain conditions) by phase coupling between the two writing beams during recording. Although this Bragg shift is small, a large diffraction efficiency enhancement is obtained when the grating is read out at the optimum angle. We have calculated the Bragg shift, using a numerical calculation based on an earlier theory, and have obtained good agreement with experiment. Using the novel SAM scheme, we have succeeded in storing 756 high resolution binary patterns in an Fe:LiNbO3 crystal of volume 1cm3, with an average diffraction efficiency of 0.5%. This large database is designed for practical use in a novel associative memory system, called a high order feedback neural network (HOFNET

  4. Optimal control of CPR procedure using hemodynamic circulation model

    Science.gov (United States)

    Lenhart, Suzanne M.; Protopopescu, Vladimir A.; Jung, Eunok

    2007-12-25

    A method for determining a chest pressure profile for cardiopulmonary resuscitation (CPR) includes the steps of representing a hemodynamic circulation model based on a plurality of difference equations for a patient, applying an optimal control (OC) algorithm to the circulation model, and determining a chest pressure profile. The chest pressure profile defines a timing pattern of externally applied pressure to a chest of the patient to maximize blood flow through the patient. A CPR device includes a chest compressor, a controller communicably connected to the chest compressor, and a computer communicably connected to the controller. The computer determines the chest pressure profile by applying an OC algorithm to a hemodynamic circulation model based on the plurality of difference equations.

  5. Statistical procedures for evaluating daily and monthly hydrologic model predictions

    Science.gov (United States)

    Coffey, M.E.; Workman, S.R.; Taraba, J.L.; Fogle, A.W.

    2004-01-01

    The overall study objective was to evaluate the applicability of different qualitative and quantitative methods for comparing daily and monthly SWAT computer model hydrologic streamflow predictions to observed data, and to recommend statistical methods for use in future model evaluations. Statistical methods were tested using daily streamflows and monthly equivalent runoff depths. The statistical techniques included linear regression, Nash-Sutcliffe efficiency, nonparametric tests, t-test, objective functions, autocorrelation, and cross-correlation. None of the methods specifically applied to the non-normal distribution and dependence between data points for the daily predicted and observed data. Of the tested methods, median objective functions, sign test, autocorrelation, and cross-correlation were most applicable for the daily data. The robust coefficient of determination (CD*) and robust modeling efficiency (EF*) objective functions were the preferred methods for daily model results due to the ease of comparing these values with a fixed ideal reference value of one. Predicted and observed monthly totals were more normally distributed, and there was less dependence between individual monthly totals than was observed for the corresponding predicted and observed daily values. More statistical methods were available for comparing SWAT model-predicted and observed monthly totals. The 1995 monthly SWAT model predictions and observed data had a regression Rr2 of 0.70, a Nash-Sutcliffe efficiency of 0.41, and the t-test failed to reject the equal data means hypothesis. The Nash-Sutcliffe coefficient and the R r2 coefficient were the preferred methods for monthly results due to the ability to compare these coefficients to a set ideal value of one.

  6. A Review of Different Estimation Procedures in the Rasch Model. Research Report 87-6.

    Science.gov (United States)

    Engelen, R. J. H.

    A short review of the different estimation procedures that have been used in association with the Rasch model is provided. These procedures include joint, conditional, and marginal maximum likelihood methods; Bayesian methods; minimum chi-square methods; and paired comparison estimation. A comparison of the marginal maximum likelihood estimation…

  7. A Connectionist Model of Stimulus Class Formation with a Yes/No Procedure and Compound Stimuli

    Science.gov (United States)

    Tovar, Angel E.; Chavez, Alvaro Torres

    2012-01-01

    We analyzed stimulus class formation in a human study and in a connectionist model (CM) with a yes/no procedure, using compound stimuli. In the human study, the participants were six female undergraduate students; the CM was a feed-forward back-propagation network. Two 3-member stimulus classes were trained with a similar procedure in both the…

  8. TSCALE: A New Multidimensional Scaling Procedure Based on Tversky's Contrast Model.

    Science.gov (United States)

    DeSarbo, Wayne S.; And Others

    1992-01-01

    TSCALE, a multidimensional scaling procedure based on the contrast model of A. Tversky for asymmetric three-way, two-mode proximity data, is presented. TSCALE conceptualizes a latent dimensional structure to describe the judgmental stimuli. A Monte Carlo analysis and two consumer psychology applications illustrate the procedure. (SLD)

  9. Communication and Procedural Models of the E-Commerce Systems

    OpenAIRE

    Suchánek, Petr

    2009-01-01

    E-commerce systems became a standard interface between sellers (or suppliers) and customers. One of basic condition of an e-commerce system to be efficient is correct definitions and describes of the all internal and external processes. All is targeted the customers´ needs and requirements. The optimal and most exact way how to obtain and find optimal solution of e-commerce system and its processes structure in companies is the modeling and simulation. In this article author shows basic model...

  10. Communication and Procedural Models of the E-commerce Systems

    OpenAIRE

    Suchánek, Petr

    2009-01-01

    E-commerce systems became a standard interface between sellers (or suppliers) and customers. One of basic condition of an e-commerce system to be efficient is correct definitions and describes of the all internal and external processes. All is targeted the customers´ needs and requirements. The optimal and most exact way how to obtain and find optimal solution of e-commerce system and its processes structure in companies is the modeling and simulation. In this article author shows basic model...

  11. Literature Evidence on Live Animal Versus Synthetic Models for Training and Assessing Trauma Resuscitation Procedures.

    Science.gov (United States)

    Hart, Danielle; McNeil, Mary Ann; Hegarty, Cullen; Rush, Robert; Chipman, Jeffery; Clinton, Joseph; Reihsen, Troy; Sweet, Robert

    2016-01-01

    There are many models currently used for teaching and assessing performance of trauma-related airway, breathing, and hemorrhage procedures. Although many programs use live animal (live tissue [LT]) models, there is a congressional effort to transition to the use of nonanimal- based methods (i.e., simulators, cadavers) for military trainees. We examined the existing literature and compared the efficacy, acceptability, and validity of available models with a focus on comparing LT models with synthetic systems. Literature and Internet searches were conducted to examine current models for seven core trauma procedures. We identified 185 simulator systems. Evidence on acceptability and validity of models was sparse. We found only one underpowered study comparing the performance of learners after training on LT versus simulator models for tube thoracostomy and cricothyrotomy. There is insufficient data-driven evidence to distinguish superior validity of LT or any other model for training or assessment of critical trauma procedures.

  12. The Performance of CSAM SAM when Cycle Length is extended

    Energy Technology Data Exchange (ETDEWEB)

    Roh, Kyung-ho; Moon, Sang-rae [KHNP, Daejeon (Korea, Republic of)

    2016-10-15

    In order to verify validation of that, CPC Axial Power Distribution is compared with Axial Power Distribution based on ICI every week. The difference between CPC Axial Power Distribution and Axial Power Distribution based on ICI increases according as fuels are burned. It is called CPC Axial Power Distribution Root Mean Square Error (CPC RMS Error). SAM and calibration of ex-core detector are important factors influencing the magnitude of the difference. According to vendor, the difference is limited by 8%. Otherwise, CPC penalty increases as many as difference increase. Therefore, KHNP developed Constrained Simulated Annealing Method (CSAM), which has better performance than that of Least Square Method (LSM), to calculate SAM constant. The CSA SAM contributed largely to maintain CPC operating margin. Somewhat, KHNP is developing the technology to be able to operate nuclear power plants for 24 month to optimize their efficiency. This paper shows trends of CPC RMS Error in a case of 24 months operation. Trends are based on data of a few OPR1000s under operation. It is data of OPR1000s that CSA SAM is applied. KHNP is developing the technology to extend operation cycle length in order to optimize the operation efficiency of OPR1000. To verify effect of extended operation cycle length on CPC, CPC Axial Power Distribution RMS Error in a case of 24 months operation was expected using operation data of six cycles in OPR1000. In cases that CPC Axial Power Distribution RMS Error exceeds threshold, operation margin is decreased due to CPC penalty. To prevent CPC operation margin from being decreased, improved method to calculate SAM or to calibrate ex-core detector is required. KHNP will consider the way to maintain CPC operation margin along with 24 month operation technology development, hereafter.

  13. Influence of the wet chemistry on the SAM GCMS analysis

    Science.gov (United States)

    Buch, A.; Freissinet, C.; Szopa, C.; Glavin, D. P.; Miller, K.; Eigendbrode, J.; Navarro-Gonzalez, R.; Stern, J. C.; Pinnick, V. T.; Coll, P. J.; François, P.; Cabane, M.; Teinturier, S.; Coscia, D.; Dworkin, J. P.; Summons, R. E.; Mahaffy, P. R.

    2013-12-01

    The SAM GC-MS instrument on the Curiosity rover allows to analyze volatile compounds from the atmosphere or volatile compounds from the Martian regolith and refractory compounds in the regolith after sample treatment using wet chemistry. One portion of the wet chemistry experiment is composed of MTBSTFA (N-methyl-N-tert-butyldimethylsilyltrifluoroacetamide) / DMF (dimethylformamide). Indeed, chemical derivatization of polar molecular compounds is achieved by the MTBSTFA silylation reaction in order to transform refractory polar compounds into a more volatile form that can be analyzed and detected by GC-MS. Results obtained on Rocknest (Leshin et al. 2013; Glavin et al. 2013) and John Klein showed the presence of MTBSTFA reaction products in the system. This means that MTBSTFA is part of the background signal under its gaseous phase and is derived from at least one of the seven MTBSTFA/DMF filled derivatization cups in SAM. Since MTBSTFA is able to react in the gaseous phase, its detection implies the possibility to have some MTBSTFA reactions with all the labile compounds possibly present in the Martian soil, in the sampling system and/or inside the SAM instrument. As such, in order to better understand the portion of products detected coming from internal reactions, we have performed several lab experiments to mimic the SAM pyrolysis and gas processing system. Specifically, we have investigated possible MTBSTFA reactions with organics at high temperatures (100°C up to 600°C) from the SAM trap (Tenax) and with oxychlorine compounds present on Mars (Glavin et al. 2013). References: Leshin et al. Science, in press; Glavin et al. JGR-Planets, accepted.

  14. WEMo (Wave Exposure Model): Formulation, Procedures and Validation

    OpenAIRE

    Malhotra, Amit; Mark S. Fonseca

    2007-01-01

    This report describes the working of National Centers for Coastal Ocean Service (NCCOS) Wave Exposure Model (WEMo) capable of predicting the exposure of a site in estuarine and closed water to local wind generated waves. WEMo works in two different modes: the Representative Wave Energy (RWE) mode calculates the exposure using physical parameters like wave energy and wave height, while the Relative Exposure Index (REI) empirically calculates exposure as a unitless index. Detailed working of th...

  15. Comparison of Estimation Procedures for Multilevel AR(1 Models

    Directory of Open Access Journals (Sweden)

    Tanja eKrone

    2016-04-01

    Full Text Available To estimate a time series model for multiple individuals, a multilevel model may be used.In this paper we compare two estimation methods for the autocorrelation in Multilevel AR(1 models, namely Maximum Likelihood Estimation (MLE and Bayesian Markov Chain Monte Carlo.Furthermore, we examine the difference between modeling fixed and random individual parameters.To this end, we perform a simulation study with a fully crossed design, in which we vary the length of the time series (10 or 25, the number of individuals per sample (10 or 25, the mean of the autocorrelation (-0.6 to 0.6 inclusive, in steps of 0.3 and the standard deviation of the autocorrelation (0.25 or 0.40.We found that the random estimators of the population autocorrelation show less bias and higher power, compared to the fixed estimators. As expected, the random estimators profit strongly from a higher number of individuals, while this effect is small for the fixed estimators.The fixed estimators profit slightly more from a higher number of time points than the random estimators.When possible, random estimation is preferred to fixed estimation.The difference between MLE and Bayesian estimation is nearly negligible. The Bayesian estimation shows a smaller bias, but MLE shows a smaller variability (i.e., standard deviation of the parameter estimates.Finally, better results are found for a higher number of individuals and time points, and for a lower individual variability of the autocorrelation. The effect of the size of the autocorrelation differs between outcome measures.

  16. A baseline-free procedure for transformation models under interval censorship.

    Science.gov (United States)

    Gu, Ming Gao; Sun, Liuquan; Zuo, Guoxin

    2005-12-01

    An important property of Cox regression model is that the estimation of regression parameters using the partial likelihood procedure does not depend on its baseline survival function. We call such a procedure baseline-free. Using marginal likelihood, we show that an baseline-free procedure can be derived for a class of general transformation models under interval censoring framework. The baseline-free procedure results a simplified and stable computation algorithm for some complicated and important semiparametric models, such as frailty models and heteroscedastic hazard/rank regression models, where the estimation procedures so far available involve estimation of the infinite dimensional baseline function. A detailed computational algorithm using Markov Chain Monte Carlo stochastic approximation is presented. The proposed procedure is demonstrated through extensive simulation studies, showing the validity of asymptotic consistency and normality. We also illustrate the procedure with a real data set from a study of breast cancer. A heuristic argument showing that the score function is a mean zero martingale is provided.

  17. Predictive market segmentation model: An application of logistic regression model and CHAID procedure

    Directory of Open Access Journals (Sweden)

    Soldić-Aleksić Jasna

    2009-01-01

    Full Text Available Market segmentation presents one of the key concepts of the modern marketing. The main goal of market segmentation is focused on creating groups (segments of customers that have similar characteristics, needs, wishes and/or similar behavior regarding the purchase of concrete product/service. Companies can create specific marketing plan for each of these segments and therefore gain short or long term competitive advantage on the market. Depending on the concrete marketing goal, different segmentation schemes and techniques may be applied. This paper presents a predictive market segmentation model based on the application of logistic regression model and CHAID analysis. The logistic regression model was used for the purpose of variables selection (from the initial pool of eleven variables which are statistically significant for explaining the dependent variable. Selected variables were afterwards included in the CHAID procedure that generated the predictive market segmentation model. The model results are presented on the concrete empirical example in the following form: summary model results, CHAID tree, Gain chart, Index chart, risk and classification tables.

  18. DNA adenine methylation of sams1 gene in symbiont-bearing Amoeba proteus.

    Science.gov (United States)

    Jeon, Taeck J

    2008-10-01

    The expression of amoeba sams genes is switched from sams1 to sams2 when amoebae are infected with Legionella jeonii. To elucidate the mechanism for the inactivation of host sams1 gene by endosymbiotic bacteria, methylation states of the sams1 gene of D and xD amoebae was compared in this study. The sams1 gene of amoebae was methylated at an internal adenine residue of GATC site in symbiont-bearing xD amoebae but not in symbiont-free D amoebae, suggesting that the modification might have caused the inactivation of sams1 in xD amoebae. The sams1 gene of xD amoebae was inactivated at the transcriptional level. Analysis of DNA showed that adenine residues in L. jeonii sams were also methylated, implying that L. jeonii bacteria belong to a Dam methylase-positive strain. In addition, both SAM and Met appeared to act as negative regulators for the expression of sams1 whereas the expression of sams2 was not affected in amoebae.

  19. Loop electrosurgical excision procedure: an effective, inexpensive, and durable teaching model.

    Science.gov (United States)

    Connor, R Shae; Dizon, A Mitch; Kimball, Kristopher J

    2014-12-01

    The effectiveness of simulation training for enhancing operative skills is well established. Here we describe the construction of a simple, low-cost model for teaching the loop electrosurgical excision procedure. Composed of common materials such as polyvinyl chloride pipe and sausages, the simulation model, shown in the accompanying figure, can be easily reproduced by other training programs. In addition, we also present an instructional video that utilizes this model to review loop electrosurgical excision procedure techniques, highlighting important steps in the procedure and briefly addressing challenging situations and common mistakes as well as strategies to prevent them. The video and model can be used in conjunction with a simulation skills laboratory to teach the procedure to students, residents, and new practitioners.

  20. A MODEL SELECTION PROCEDURE IN MIXTURE-PROCESS EXPERIMENTS FOR INDUSTRIAL PROCESS OPTIMIZATION

    Directory of Open Access Journals (Sweden)

    Márcio Nascimento de Souza Leão

    2015-08-01

    Full Text Available We present a model selection procedure for use in Mixture and Mixture-Process Experiments. Certain combinations of restrictions on the proportions of the mixture components can result in a very constrained experimental region. This results in collinearity among the covariates of the model, which can make it difficult to fit the model using the traditional method based on the significance of the coefficients. For this reason, a model selection methodology based on information criteria will be proposed for process optimization. Two examples are presented to illustrate this model selection procedure.

  1. New Procedure to Develop Lumped Kinetic Models for Heavy Fuel Oil Combustion

    KAUST Repository

    Han, Yunqing

    2016-09-20

    A new procedure to develop accurate lumped kinetic models for complex fuels is proposed, and applied to the experimental data of the heavy fuel oil measured by thermogravimetry. The new procedure is based on the pseudocomponents representing different reaction stages, which are determined by a systematic optimization process to ensure that the separation of different reaction stages with highest accuracy. The procedure is implemented and the model prediction was compared against that from a conventional method, yielding a significantly improved agreement with the experimental data. © 2016 American Chemical Society.

  2. Modelling dental implant extraction by pullout and torque procedures.

    Science.gov (United States)

    Rittel, D; Dorogoy, A; Shemtov-Yona, K

    2017-07-01

    Dental implants extraction, achieved either by applying torque or pullout force, is used to estimate the bone-implant interfacial strength. A detailed description of the mechanical and physical aspects of the extraction process in the literature is still missing. This paper presents 3D nonlinear dynamic finite element simulations of a commercial implant extraction process from the mandible bone. Emphasis is put on the typical load-displacement and torque-angle relationships for various types of cortical and trabecular bone strengths. The simulations also study of the influence of the osseointegration level on those relationships. This is done by simulating implant extraction right after insertion when interfacial frictional contact exists between the implant and bone, and long after insertion, assuming that the implant is fully bonded to the bone. The model does not include a separate representation and model of the interfacial layer for which available data is limited. The obtained relationships show that the higher the strength of the trabecular bone the higher the peak extraction force, while for application of torque, it is the cortical bone which might dictate the peak torque value. Information on the relative strength contrast of the cortical and trabecular components, as well as the progressive nature of the damage evolution, can be revealed from the obtained relations. It is shown that full osseointegration might multiply the peak and average load values by a factor 3-12 although the calculated work of extraction varies only by a factor of 1.5. From a quantitative point of view, it is suggested that, as an alternative to reporting peak load or torque values, an average value derived from the extraction work be used to better characterize the bone-implant interfacial strength. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Directed immobilization of reduced antibody fragments onto a novel SAM on gold for myoglobin impedance immunosensing.

    Science.gov (United States)

    Billah, Md Morsaline; Hodges, Christopher S; Hays, Henry C W; Millner, P A

    2010-11-01

    The successful construction of an immunosensor depends on having an effective procedure for immobilising the bio-recognition element to the transducer surface. In the present study, an amino-terminated 4-aminothiophenol (ATP) self-assembled monolayer (SAM) was modified with heterobifunctional crosslinker sulfosuccinimidyl 4-[N-maleimidomethyl] cyclohexane-1-carboxylate to couple reduced anti-myoglobin half-antibody fragments. The disulphide groups present in the hinge region of IgG molecules were selectively cleaved by 2-mercaptoethylamine to produce reduced half-antibody fragments with free sulphydryl groups. The maleimide terminated 4-ATP SAM modified surface was coupled to these reduced antibody fragments to produce highly oriented immobilization of the half-antibody via its Fc domain and to allow free access to the Fv bindings sites. This represents an improvement by comparison with biotin/avidin mediated IgG attachment which is essentially randomly oriented. Functional immunosensors were able to detect myoglobin in both phosphate buffered saline and whole serum over the range of concentrations from 10(-13)M to 10(-6)M, and order of magnitude better than avidin/biotin linked immunosensors. In addition, atomic force microscopy (AFM) was carried out to elucidate the nanotopology of the immunosensor surface at different stages of fabrication; the images demonstrate that half antibodies bind as described and show structural changes on subsequent antigen binding.

  4. Procedure for assessing the performance of a rockfall fragmentation model

    Science.gov (United States)

    Matas, Gerard; Lantada, Nieves; Corominas, Jordi; Gili, Josep Antoni; Ruiz-Carulla, Roger; Prades, Albert

    2017-04-01

    A Rockfall is a mass instability process frequently observed in road cuts, open pit mines and quarries, steep slopes and cliffs. It is frequently observed that the detached rock mass becomes fragmented when it impacts with the slope surface. The consideration of the fragmentation of the rockfall mass is critical for the calculation of block's trajectories and their impact energies, to further assess their potential to cause damage and design adequate preventive structures. We present here the performance of the RockGIS model. It is a GIS-Based tool that simulates stochastically the fragmentation of the rockfalls, based on a lumped mass approach. In RockGIS, the fragmentation initiates by the disaggregation of the detached rock mass through the pre-existing discontinuities just before the impact with the ground. An energy threshold is defined in order to determine whether the impacting blocks break or not. The distribution of the initial mass between a set of newly generated rock fragments is carried out stochastically following a power law. The trajectories of the new rock fragments are distributed within a cone. The model requires the calibration of both the runout of the resultant blocks and the spatial distribution of the volumes of fragments generated by breakage during their propagation. As this is a coupled process which is controlled by several parameters, a set of performance criteria to be met by the simulation have been defined. The criteria includes: position of the centre of gravity of the whole block distribution, histogram of the runout of the blocks, extent and boundaries of the young debris cover over the slope surface, lateral dispersion of trajectories, total number of blocks generated after fragmentation, volume distribution of the generated fragments, the number of blocks and volume passages past a reference line and the maximum runout distance Since the number of parameters to fit increases significantly when considering fragmentation, the

  5. SAM Technical Review Committee Final Report: Summary and Key Recommendations from the Onsite TRC Meeting Held April 22-23, 2013

    Energy Technology Data Exchange (ETDEWEB)

    Blair, N.; Dobos, S.; Janzou, S.; Gilman, P.; Freeman, J.; Kaffine, L.

    2013-08-01

    The System Advisor Model (SAM) is a broad and robust set of models and frameworks for analyzing both system performance and system financing. It does this across a range of technologies dominated by solar technologies including photovoltaics (PV) and concentrated solar power (CSP). The U.S. Department of Energy (DOE) Solar Energy Technology Program requested the SAM development team to review the photovoltaic performance modeling with the development community and specifically, with the independent engineering community. The report summarizes the major effort for this technical review committee (TRC).

  6. Using Video Modeling with Voiceover Instruction Plus Feedback to Train Staff to Implement Direct Teaching Procedures.

    Science.gov (United States)

    Giannakakos, Antonia R; Vladescu, Jason C; Kisamore, April N; Reeve, Sharon A

    2016-06-01

    Direct teaching procedures are often an important part of early intensive behavioral intervention for consumers with autism spectrum disorder. In the present study, a video model with voiceover (VMVO) instruction plus feedback was evaluated to train three staff trainees to implement a most-to-least direct (MTL) teaching procedure. Probes for generalization were conducted with untrained direct teaching procedures (i.e., least-to-most, prompt delay) and with an actual consumer. The results indicated that VMVO plus feedback was effective in training the staff trainees to implement the MTL procedure. Although additional feedback was required for the staff trainees to show mastery of the untrained direct teaching procedures (i.e., least-to-most and prompt delay) and with an actual consumer, moderate to high levels of generalization were observed.

  7. Genome sequencing and annotation of Stenotrophomonas sp. SAM8

    Directory of Open Access Journals (Sweden)

    Samy Selim

    2015-12-01

    Full Text Available We report draft genome sequence of Stenotrophomonas sp. strain SAM8, isolated from environmental water. The draft genome size is 3,665,538 bp with a G + C content of 67.2% and contains 6 rRNA sequence (single copies of 5S, 16S & 23S rRNA. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LDAV00000000.

  8. Jo Ann Baumgartner and Sam Earnshaw: Organizers and Farmers

    OpenAIRE

    Rabkin, Sarah

    2010-01-01

    Jo Ann Baumgartner directs the Wild Farm Alliance, based in Watsonville, California. WFA’s mission, as described on the organization’s website, is “to promote agriculture that helps to protect and restore wild Nature.” Through research, publications, presentations, events, policy work, and consulting, the organization works to “connect food systems with ecosystems.” Sam Earnshaw is Central Coast regional coordinator of the Community Alliance with Family Farmers. Working with CAFF’s f...

  9. Mechanistic Enzymology of the Radical SAM Enzyme DesII.

    Science.gov (United States)

    Ruszczycky, Mark W; Liu, Hung-Wen

    2015-04-01

    DesII is a member of the radical SAM family of enzymes that catalyzes radical-mediated transformations of TDP-4-amino-4,6-didexoy-D-glucose as well as other sugar nucleotide diphosphates. Like nearly all radical SAM enzymes, the reactions begin with the reductive homolysis of SAM to produce a 5'-deoxyadenosyl radical which is followed by regiospecific hydrogen atom abstraction from the substrate. What happens next, however, depends on the nature of the substrate radical so produced. In the case of the biosynthetically relevant substrate, a radical-mediated deamination ensues; however, when this amino group is replaced with a hydroxyl, one instead observes dehydrogenation. The factors that govern the fate of the initially generated substrate radical as well as the mechanistic details underlying these transformations have been a key focus of research into the chemistry of DesII. This review will discuss recent discoveries pertaining to the enzymology of DesII, how it may relate to understanding other radical-mediated lyases and dehydrogenases and the working hypotheses currently being investigated regarding the mechanism of DesII catalysis.

  10. CE-SAM: a conversational interface for ISR mission support

    Science.gov (United States)

    Pizzocaro, Diego; Parizas, Christos; Preece, Alun; Braines, Dave; Mott, David; Bakdash, Jonathan Z.

    2013-05-01

    There is considerable interest in natural language conversational interfaces. These allow for complex user interactions with systems, such as fulfilling information requirements in dynamic environments, without requiring extensive training or a technical background (e.g. in formal query languages or schemas). To leverage the advantages of conversational interactions we propose CE-SAM (Controlled English Sensor Assignment to Missions), a system that guides users through refining and satisfying their information needs in the context of Intelligence, Surveillance, and Reconnaissance (ISR) operations. The rapidly-increasing availability of sensing assets and other information sources poses substantial challenges to effective ISR resource management. In a coalition context, the problem is even more complex, because assets may be "owned" by different partners. We show how CE-SAM allows a user to refine and relate their ISR information needs to pre-existing concepts in an ISR knowledge base, via conversational interaction implemented on a tablet device. The knowledge base is represented using Controlled English (CE) - a form of controlled natural language that is both human-readable and machine processable (i.e. can be used to implement automated reasoning). Users interact with the CE-SAM conversational interface using natural language, which the system converts to CE for feeding-back to the user for confirmation (e.g. to reduce misunderstanding). We show that this process not only allows users to access the assets that can support their mission needs, but also assists them in extending the CE knowledge base with new concepts.

  11. Formulating "Principles of Procedure" for the Foreign Language Classroom: A Framework for Process Model Language Curricula

    Science.gov (United States)

    Villacañas de Castro, Luis S.

    2016-01-01

    This article aims to apply Stenhouse's process model of curriculum to foreign language (FL) education, a model which is characterized by enacting "principles of procedure" which are specific to the discipline which the school subject belongs to. Rather than to replace or dissolve current approaches to FL teaching and curriculum…

  12. MATLAB-FLUX Coupling for numerical modeling in education

    Directory of Open Access Journals (Sweden)

    Pleshivtseva Yulia

    2016-01-01

    Full Text Available This paper describes the structure of optimization procedure based on a multi-paradigm numerical computing environment MATLAB and FEM software for numerical analysis in Electrical Engineering Higher Education. The procedure presented is developed and used in educational process at Samara State Technical University (SamSTU for optimization of interrelated electromagnetic and temperature fields during induction heating processes. Some study cases are shown for optimization of static induction heating processes based on 2D numerical FLUX model.

  13. In situ analysis of martian regolith with the SAM experiment during the first mars year of the MSL mission: Identification of organic molecules by gas chromatography from laboratory measurements

    Science.gov (United States)

    Millan, M.; Szopa, C.; Buch, A.; Coll, P.; Glavin, D. P.; Freissinet, C.; Navarro-Gonzalez, R.; François, P.; Coscia, D.; Bonnet, J. Y.; Teinturier, S.; Cabane, M.; Mahaffy, P. R.

    2016-09-01

    The Sample Analysis at Mars (SAM) instrument onboard the Curiosity rover, is specifically designed for in situ molecular and isotopic analyses of martian surface materials and atmosphere. It contributes to the Mars Science Laboratory (MSL) missions primary scientific goal to characterize the potential past, present or future habitability of Mars. In all of the analyses of solid samples delivered to SAM so far, chlorinated organic compounds have been detected above instrument background levels and identified by gas chromatography coupled to mass spectrometry (GC-MS) (Freissinet et al., 2015; Glavin et al., 2013). While some of these may originate from reactions between oxychlorines and terrestrial organic carbon present in the instrument background (Glavin et al., 2013), others have been demonstrated to originate from indigenous organic carbon present in samples (Freissinet et al., 2015). We present here laboratory calibrations that focused on the analyses performed with the MXT-CLP GC column (SAM GC-5 channel) used for nearly all of the GC-MS analyses of the martian soil samples carried out with SAM to date. Complementary to the mass spectrometric data, gas chromatography allows us to separate and identify the species analyzable in a nominal SAM-GC run time of about 21 min. To characterize the analytical capabilities of this channel within the SAM Flight Model (FM) operating conditions on Mars, and their implications on the detection of organic matter, it is required to perform laboratory experimental tests and calibrations on spare model components. This work assesses the SAM flight GC-5 column efficiency, confirms the identification of the molecules based on their retention time, and enables a better understanding of the behavior of the SAM injection trap (IT) and its release of organic molecules. This work will enable further optimization of the SAM-GC runs for additional samples to be analyzed during the MSL mission.

  14. Procedural learning as a measure of functional impairment in a mouse model of ischemic stroke.

    Science.gov (United States)

    Linden, Jérôme; Van de Beeck, Lise; Plumier, Jean-Christophe; Ferrara, André

    2016-07-01

    Basal ganglia stroke is often associated with functional deficits in patients, including difficulties to learn and execute new motor skills (procedural learning). To measure procedural learning in a murine model of stroke (30min right MCAO), we submitted C57Bl/6J mice to various sensorimotor tests, then to an operant procedure (Serial Order Learning) specifically assessing the ability to learn a simple motor sequence. Results showed that MCAO affected the performance in some of the sensorimotor tests (accelerated rotating rod and amphetamine rotation test) and the way animals learned a motor sequence. The later finding seems to be caused by difficulties regarding the chunking of operant actions into a coherent motor sequence; the appeal for food rewards and ability to press levers appeared unaffected by MCAO. We conclude that assessment of motor learning in rodent models of stroke might improve the translational value of such models.

  15. Ablation of the Sam68 RNA binding protein protects mice from age-related bone loss.

    Directory of Open Access Journals (Sweden)

    Stéphane Richard

    2005-12-01

    Full Text Available The Src substrate associated in mitosis of 68 kDa (Sam68 is a KH-type RNA binding protein that has been shown to regulate several aspects of RNA metabolism; however, its physiologic role has remained elusive. Herein we report the generation of Sam68-null mice by homologous recombination. Aged Sam68-/- mice preserved their bone mass, in sharp contrast with 12-month-old wild-type littermates in which bone mass was decreased up to approximately 75%. In fact, the bone volume of the 12-month-old Sam68-/- mice was virtually indistinguishable from that of 4-month-old wild-type or Sam68-/- mice. Sam68-/- bone marrow stromal cells had a differentiation advantage for the osteogenic pathway. Moreover, the knockdown of Sam68 using short hairpin RNA in the embryonic mesenchymal multipotential progenitor C3H10T1/2 cells resulted in more pronounced expression of the mature osteoblast marker osteocalcin when differentiation was induced with bone morphogenetic protein-2. Cultures of mouse embryo fibroblasts generated from Sam68+/+ and Sam68-/- littermates were induced to differentiate into adipocytes with culture medium containing pioglitazone and the Sam68-/- mouse embryo fibroblasts shown to have impaired adipocyte differentiation. Furthermore, in vivo it was shown that sections of bone from 12-month-old Sam68-/- mice had few marrow adipocytes compared with their age-matched wild-type littermate controls, which exhibited fatty bone marrow. Our findings identify endogenous Sam68 as a positive regulator of adipocyte differentiation and a negative regulator of osteoblast differentiation, which is consistent with Sam68 being a modulator of bone marrow mesenchymal cell differentiation, and hence bone metabolism, in aged mice.

  16. The Chain-Link Fence Model: A Framework for Creating Security Procedures

    OpenAIRE

    Houghton, Robert F.

    2013-01-01

    A long standing problem in information technology security is how to help reduce the security footprint. Many specific proposals exist to address specific problems in information technology security. Most information technology solutions need to be repeatable throughout the course of an information systems lifecycle. The Chain-Link Fence Model is a new model for creating and implementing information technology procedures. This model was validated by two different methods: the first being int...

  17. A network society communicative model for optimizing the Refugee Status Determination (RSD procedures

    Directory of Open Access Journals (Sweden)

    Andrea Pacheco Pacífico

    2013-01-01

    Full Text Available This article recommends a new way to improve Refugee Status Determination (RSD procedures by proposing a network society communicative model based on active involvement and dialogue among all implementing partners. This model, named after proposals from Castells, Habermas, Apel, Chimni, and Betts, would be mediated by the United Nations High Commissioner for Refugees (UNHCR, whose role would be modeled after that of the International Committee of the Red Cross (ICRC practice.

  18. Establishing Method of Geoid Model be the Sam with CORS Province Class%一种适用于CORS省级大地水准面模型简易建立方法

    Institute of Scientific and Technical Information of China (English)

    葛奎; 张从宝; 方国锋

    2014-01-01

    After CORS be established , Geoid model must be created For conversion between geodetic height and elevation. In order to improve its efficiency and precision, This paper presents a simple method based on EGM2008 and less GPS/level data of establishing provincial geoid model. which consider the benchmark system deviation through a simplified mathematical model, and Select exponent of 2 anti-weighted distance method for fitting height anomaly field residuals. Finally ,established a provincial high-precision geoid model in short time, After testing and engineering applications,the results show that the accuracy is credible, Can significantly improve the conversion efficiency.%CORS建立后,为进行大地高和正常高之间的转换,必须建立大地水准面模型,为提高其工作效率和精度,本文提出了一种基于EGM2008重力场模型和较少的GPS/水准数据的省级大地水准面模型的简易建立方法,通过简化的并考虑基准系统偏差的数学模型,选择幂指数为2的反权距离法用于高程异常残差场的拟合,较短时间内建立了高精度的省级大地水准面模型。经外业检测及工程应用成果显示,所建立的大地水准面模型精度可信,能够显著提高转换效率。

  19. Analyzing longitudinal data with the linear mixed models procedure in SPSS.

    Science.gov (United States)

    West, Brady T

    2009-09-01

    Many applied researchers analyzing longitudinal data share a common misconception: that specialized statistical software is necessary to fit hierarchical linear models (also known as linear mixed models [LMMs], or multilevel models) to longitudinal data sets. Although several specialized statistical software programs of high quality are available that allow researchers to fit these models to longitudinal data sets (e.g., HLM), rapid advances in general purpose statistical software packages have recently enabled analysts to fit these same models when using preferred packages that also enable other more common analyses. One of these general purpose statistical packages is SPSS, which includes a very flexible and powerful procedure for fitting LMMs to longitudinal data sets with continuous outcomes. This article aims to present readers with a practical discussion of how to analyze longitudinal data using the LMMs procedure in the SPSS statistical software package.

  20. A Stepwise Time Series Regression Procedure for Water Demand Model Identification

    Science.gov (United States)

    Miaou, Shaw-Pin

    1990-09-01

    Annual time series water demand has traditionally been studied through multiple linear regression analysis. Four associated model specification problems have long been recognized: (1) the length of the available time series data is relatively short, (2) a large set of candidate explanatory or "input" variables needs to be considered, (3) input variables can be highly correlated with each other (multicollinearity problem), and (4) model error series are often highly autocorrelated or even nonstationary. A step wise time series regression identification procedure is proposed to alleviate these problems. The proposed procedure adopts the sequential input variable selection concept of stepwise regression and the "three-step" time series model building strategy of Box and Jenkins. Autocorrelated model error is assumed to follow an autoregressive integrated moving average (ARIMA) process. The stepwise selection procedure begins with a univariate time series demand model with no input variables. Subsequently, input variables are selected and inserted into the equation one at a time until the last entered variable is found to be statistically insignificant. The order of insertion is determined by a statistical measure called between-variable partial correlation. This correlation measure is free from the contamination of serial autocorrelation. Three data sets from previous studies are employed to illustrate the proposed procedure. The results are then compared with those from their original studies.

  1. Surgical procedures for a rat model of partial orthotopic liver transplantation with hepatic arterial reconstruction.

    Science.gov (United States)

    Nagai, Kazuyuki; Yagi, Shintaro; Uemoto, Shinji; Tolba, Rene H

    2013-03-07

    Orthotopic liver transplantation (OLT) in rats using a whole or partial graft is an indispensable experimental model for transplantation research, such as studies on graft preservation and ischemia-reperfusion injury, immunological responses, hemodynamics, and small-for-size syndrome. The rat OLT is among the most difficult animal models in experimental surgery and demands advanced microsurgical skills that take a long time to learn. Consequently, the use of this model has been limited. Since the reliability and reproducibility of results are key components of the experiments in which such complex animal models are used, it is essential for surgeons who are involved in rat OLT to be trained in well-standardized and sophisticated procedures for this model. While various techniques and modifications of OLT in rats have been reported since the first model was described by Lee et al. in 1973, the elimination of the hepatic arterial reconstruction and the introduction of the cuff anastomosis technique by Kamada et al. were a major advancement in this model, because they simplified the reconstruction procedures to a great degree. In the model by Kamada et al., the hepatic rearterialization was also eliminated. Since rats could survive without hepatic arterial flow after liver transplantation, there was considerable controversy over the value of hepatic arterialization. However, the physiological superiority of the arterialized model has been increasingly acknowledged, especially in terms of preserving the bile duct system and the liver integrity. In this article, we present detailed surgical procedures for a rat model of OLT with hepatic arterial reconstruction using a 50% partial graft after ex vivo liver resection. The reconstruction procedures for each vessel and the bile duct are performed by the following methods: a 7-0 polypropylene continuous suture for the supra- and infrahepatic vena cava; a cuff technique for the portal vein; and a stent technique for the

  2. An incremental procedure model for e-learning projects at universities

    Directory of Open Access Journals (Sweden)

    Pahlke, Friedrich

    2006-11-01

    Full Text Available E-learning projects at universities are produced under different conditions than in industry. The main characteristic of many university projects is that these are realized quasi in a solo effort. In contrast, in private industry the different, interdisciplinary skills that are necessary for the development of e-learning are typically supplied by a multimedia agency.A specific procedure tailored for the use at universities is therefore required to facilitate mastering the amount and complexity of the tasks.In this paper an incremental procedure model is presented, which describes the proceeding in every phase of the project. It allows a high degree of flexibility and emphasizes the didactical concept – instead of the technical implementation. In the second part, we illustrate the practical use of the theoretical procedure model based on the project “Online training in Genetic Epidemiology”.

  3. Post-translational modification of ribosomally synthesized peptides by a radical SAM epimerase in Bacillus subtilis

    Science.gov (United States)

    Benjdia, Alhosna; Guillot, Alain; Ruffié, Pauline; Leprince, Jérôme; Berteau, Olivier

    2017-07-01

    Ribosomally synthesized peptides are built out of L-amino acids, whereas D-amino acids are generally the hallmark of non-ribosomal synthetic processes. Here we show that the model bacterium Bacillus subtilis is able to produce a novel type of ribosomally synthesized and post-translationally modified peptide that contains D-amino acids, and which we propose to call epipeptides. We demonstrate that a two [4Fe-4S]-cluster radical S-adenosyl-L-methionine (SAM) enzyme converts L-amino acids into their D-counterparts by catalysing Cα-hydrogen-atom abstraction and using a critical cysteine residue as the hydrogen-atom donor. Unexpectedly, these D-amino acid residues proved to be essential for the activity of a peptide that induces the expression of LiaRS, a major component of the bacterial cell envelope stress-response system. Present in B. subtilis and in several members of the human microbiome, these epipeptides and radical SAM epimerases broaden the landscape of peptidyl structures accessible to living organisms.

  4. Benchmark Simulations of the Thermal-Hydraulic Responses during EBR-II Inherent Safety Tests using SAM

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Rui; Sumner, Tyler S.

    2016-04-17

    An advanced system analysis tool SAM is being developed for fast-running, improved-fidelity, and whole-plant transient analyses at Argonne National Laboratory under DOE-NE’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. As an important part of code development, companion validation activities are being conducted to ensure the performance and validity of the SAM code. This paper presents the benchmark simulations of two EBR-II tests, SHRT-45R and BOP-302R, whose data are available through the support of DOE-NE’s Advanced Reactor Technology (ART) program. The code predictions of major primary coolant system parameter are compared with the test results. Additionally, the SAS4A/SASSYS-1 code simulation results are also included for a code-to-code comparison.

  5. Detection of Nitric Oxide by the Sample Analysis at Mars (SAM) Instrument Implications for the Presence of Nitrates

    Science.gov (United States)

    Navarro-Gonzalez, R.; Stern, J.; Freissinet, C.; Franz, H. B.; Eigenbrode, J. L..; McKay, C. P.; Coll, P.; Sutter, B.; Archer, D.; McAdam, A.; Cabane, M.; Ming, D. W.; Glavin, D.; Leshin, L.; Wong, M.; Atreya, S.; Wray, J. J.; Steele, A.; Buch, A.; Prats, B. D.; Szopa, C.; Coscia, D.; Teinturier, S.; Conrad, P.; Owen, T. C.; Mahaffy, P.; Grotzinger, J. P.

    2014-01-01

    One of the main goals of the Mars Science Laboratory is to determine whether the planet ever had environmental conditions able to support microbial life. Nitrogen is a fundamental element for life, and is present in structural (e.g., proteins), catalytic (e.g., enzymes and ribozymes), energy transfer (e.g., ATP) and information storage (RNA and DNA) biomolecules. Planetary models suggest that molecular nitrogen was abundant in the early Martian atmosphere, but was rapidly lost to space by photochemistry, sputtering impact erosion, and oxidized and deposited to the surface as nitrate. Nitrates are a fundamental source for nitrogen to terrestrial microorganisms. Therefore, the detection of nitrates in soils and rocks is important to assess the habitability of a Martian environment. SAM is capable of detecting nitrates by their thermal decomposition into nitric oxide, NO. Here we analyze the release of NO from soils and rocks examined by the SAM instrument at Gale crater, and discuss its origin.

  6. SAM Overview and Operation at the D0 Experiment

    Institute of Scientific and Technical Information of China (English)

    LauriLoebel-Carpenter; LeeLueking; 等

    2001-01-01

    SAM is a network-distributed data management system developed at Fermilab for use with Run II data,It is being Employed by the D0 Experiment to store,manage,deliver,and track processing of all data.We describe the design and features of the system including resource management and data transfer mechanisms,We show the operational experience D0 has accumulated to date including data acquisition processing,and all levels of access and delivery.We present various configurations of the system and describe their use in the collaboration.

  7. Comparing uncertainty resulting from two-step and global regression procedures applied to microbial growth models.

    Science.gov (United States)

    Martino, K G; Marks, B P

    2007-12-01

    Two different microbial modeling procedures were compared and validated against independent data for Listeria monocytogenes growth. The most generally used method is two consecutive regressions: growth parameters are estimated from a primary regression of microbial counts, and a secondary regression relates the growth parameters to experimental conditions. A global regression is an alternative method in which the primary and secondary models are combined, giving a direct relationship between experimental factors and microbial counts. The Gompertz equation was the primary model, and a response surface model was the secondary model. Independent data from meat and poultry products were used to validate the modeling procedures. The global regression yielded the lower standard errors of calibration, 0.95 log CFU/ml for aerobic and 1.21 log CFU/ml for anaerobic conditions. The two-step procedure yielded errors of 1.35 log CFU/ml for aerobic and 1.62 log CFU/ ml for anaerobic conditions. For food products, the global regression was more robust than the two-step procedure for 65% of the cases studied. The robustness index for the global regression ranged from 0.27 (performed better than expected) to 2.60. For the two-step method, the robustness index ranged from 0.42 to 3.88. The predictions were overestimated (fail safe) in more than 50% of the cases using the global regression and in more than 70% of the cases using the two-step regression. Overall, the global regression performed better than the two-step procedure for this specific application.

  8. A new procedure to built a model covariance matrix: first results

    Science.gov (United States)

    Barzaghi, R.; Marotta, A. M.; Splendore, R.; Borghi, A.

    2012-04-01

    In order to validate the results of geophysical models a common procedure is to compare model predictions with observations by means of statistical tests. A limit of this approach is the lack of a covariance matrix associated to model results, that may frustrate the achievement of a confident statistical significance of the results. Trying to overcome this limit, we have implemented a new procedure to build a model covariance matrix that could allow a more reliable statistical analysis. This procedure has been developed in the frame of the thermo-mechanical model described in Splendore et al. (2010), that predicts the present-day crustal velocity field in the Tyrrhenian due to Africa-Eurasia convergence and to lateral rheological heterogeneities of the lithosphere. Modelled tectonic velocity field has been compared to the available surface velocity field based on GPS observation, determining the best fit model and the degree of fitting, through the use of a χ2 test. Once we have identified the key models parameters and defined their appropriate ranges of variability, we have run 100 different models for 100 sets of randomly values of the parameters extracted within the corresponding interval, obtaining a stack of 100 velocity fields. Then, we calculated variance and empirical covariance for the stack of results, taking into account also cross-correlation, obtaining a positive defined, diagonal matrix that represents the covariance matrix of the model. This empirical approach allows us to define a more robust statistical analysis with respect the classic approach. Reference Splendore, Marotta, Barzaghi, Borghi and Cannizzaro, 2010. Block model versus thermomechanical model: new insights on the present-day regional deformation in the surroundings of the Calabrian Arc. In: Spalla, Marotta and Gosso (Eds) Advances in Interpretation of Geological Processes: Refinement of Multi scale Data and Integration in Numerical Modelling. Geological Society, London, Special

  9. A new experimental procedure for incorporation of model contaminants in polymer hosts

    NARCIS (Netherlands)

    Papaspyrides, C.D.; Voultzatis, Y.; Pavlidou, S.; Tsenoglou, C.; Dole, P.; Feigenbaum, A.; Paseiro, P.; Pastorelli, S.; Cruz Garcia, C. de la; Hankemeier, T.; Aucejo, S.

    2005-01-01

    A new experimental procedure for incorporation of model contaminants in polymers was developed as part of a general scheme for testing the efficiency of functional barriers in food packaging. The aim was to progressively pollute polymers in a controlled fashion up to a high level in the range of 100

  10. A new experimental procedure for incorporation of model contaminants in polymer hosts

    NARCIS (Netherlands)

    Papaspyrides, C.D.; Voultzatis, Y.; Pavlidou, S.; Tsenoglou, C.; Dole, P.; Feigenbaum, A.; Paseiro, P.; Pastorelli, S.; Cruz Garcia, C. de la; Hankemeier, T.; Aucejo, S.

    2005-01-01

    A new experimental procedure for incorporation of model contaminants in polymers was developed as part of a general scheme for testing the efficiency of functional barriers in food packaging. The aim was to progressively pollute polymers in a controlled fashion up to a high level in the range of 100

  11. Studying Differential Item Functioning via Latent Variable Modeling: A Note on a Multiple-Testing Procedure

    Science.gov (United States)

    Raykov, Tenko; Marcoulides, George A.; Lee, Chun-Lung; Chang, Chi

    2013-01-01

    This note is concerned with a latent variable modeling approach for the study of differential item functioning in a multigroup setting. A multiple-testing procedure that can be used to evaluate group differences in response probabilities on individual items is discussed. The method is readily employed when the aim is also to locate possible…

  12. User Acceptance of YouTube for Procedural Learning: An Extension of the Technology Acceptance Model

    Science.gov (United States)

    Lee, Doo Young; Lehto, Mark R.

    2013-01-01

    The present study was framed using the Technology Acceptance Model (TAM) to identify determinants affecting behavioral intention to use YouTube. Most importantly, this research emphasizes the motives for using YouTube, which is notable given its extrinsic task goal of being used for procedural learning tasks. Our conceptual framework included two…

  13. A Numerical Procedure for Model Identifiability Analysis Applied to Enzyme Kinetics

    DEFF Research Database (Denmark)

    Daele, Timothy, Van; Van Hoey, Stijn; Gernaey, Krist;

    2015-01-01

    exercise, thereby bypassing the challenging task of model structure determination and identification. Parameter identification problems can thus lead to ill-calibrated models with low predictive power and large model uncertainty. Every calibration exercise should therefore be precededby a proper model...... and Pronzato (1997) and which can be easily set up for any type of model. In this paper the proposed approach is applied to the forward reaction rate of the enzyme kinetics proposed by Shin and Kim(1998). Structural identifiability analysis showed that no local structural model problems were occurring......The proper calibration of models describing enzyme kinetics can be quite challenging. In the literature, different procedures are available to calibrate these enzymatic models in an efficient way. However, in most cases the model structure is already decided on prior to the actual calibration...

  14. Multiple endmember spectral-angle-mapper (SAM) analysis improves discrimination of Savanna tree species

    CSIR Research Space (South Africa)

    Cho, Moses A

    2009-08-01

    Full Text Available architecture. Several mapping methods are applied in remote sensing to quantify species or vegetation community distribution at the local to regional scale. The most commonly used methods include maximum likelihood, spectral mixture analysis (SMA)[1...] and spectral angle mapper (SAM)[2]. The application of some of these methods including SAM and SMA has become popular with the advent of hyperspectral remote sensing. SAM determines the degree of similarity between two spectra by treating the spectra...

  15. Experimental testing procedures and dynamic model validation for vanadium redox flow battery storage system

    Science.gov (United States)

    Baccino, Francesco; Marinelli, Mattia; Nørgård, Per; Silvestro, Federico

    2014-05-01

    The paper aims at characterizing the electrochemical and thermal parameters of a 15 kW/320 kWh vanadium redox flow battery (VRB) installed in the SYSLAB test facility of the DTU Risø Campus and experimentally validating the proposed dynamic model realized in Matlab-Simulink. The adopted testing procedure consists of analyzing the voltage and current values during a power reference step-response and evaluating the relevant electrochemical parameters such as the internal resistance. The results of different tests are presented and used to define the electrical characteristics and the overall efficiency of the battery system. The test procedure has general validity and could also be used for other storage technologies. The storage model proposed and described is suitable for electrical studies and can represent a general model in terms of validity. Finally, the model simulation outputs are compared with experimental measurements during a discharge-charge sequence.

  16. An innovative 3-D numerical modelling procedure for simulating repository-scale excavations in rock - SAFETI

    Energy Technology Data Exchange (ETDEWEB)

    Young, R. P.; Collins, D.; Hazzard, J.; Heath, A. [Department of Earth Sciences, Liverpool University, 4 Brownlow street, UK-0 L69 3GP Liverpool (United Kingdom); Pettitt, W.; Baker, C. [Applied Seismology Consultants LTD, 10 Belmont, Shropshire, UK-S41 ITE Shrewsbury (United Kingdom); Billaux, D.; Cundall, P.; Potyondy, D.; Dedecker, F. [Itasca Consultants S.A., Centre Scientifique A. Moiroux, 64, chemin des Mouilles, F69130 Ecully (France); Svemar, C. [Svensk Karnbranslemantering AB, SKB, Aspo Hard Rock Laboratory, PL 300, S-57295 Figeholm (Sweden); Lebon, P. [ANDRA, Parc de la Croix Blanche, 7, rue Jean Monnet, F-92298 Chatenay-Malabry (France)

    2004-07-01

    This paper presents current results from work performed within the European Commission project SAFETI. The main objective of SAFETI is to develop and test an innovative 3D numerical modelling procedure that will enable the 3-D simulation of nuclear waste repositories in rock. The modelling code is called AC/DC (Adaptive Continuum/ Dis-Continuum) and is partially based on Itasca Consulting Group's Particle Flow Code (PFC). Results are presented from the laboratory validation study where algorithms and procedures have been developed and tested to allow accurate 'Models for Rock' to be produced. Preliminary results are also presented on the use of AC/DC with parallel processors and adaptive logic. During the final year of the project a detailed model of the Prototype Repository Experiment at SKB's Hard Rock Laboratory will be produced using up to 128 processors on the parallel super computing facility at Liverpool University. (authors)

  17. Parameter Vertex Color Pada Animation Procedural 3D Model Vegetasi Musaceae

    Directory of Open Access Journals (Sweden)

    I Gede Ngurah Arya Indrayasa

    2017-02-01

    Full Text Available Penggunaan vegetasi untuk industri film, video game, simulasi, dan arsitektur visualisas merupakan faktor penting untuk menghasilkan adegan pemandangan alam lebih hidup. Penelitian ini bertujuan untuk mengetahui pengaruh dari vertex color terhadap efek angin  pada animasi prosedural 3d model vegetasi musaceae serta parameter vertex color yang tepat untuk menghasilkan animasi 3d model vegetasi musaceae realistis. Hasil akhir yang di capai adalah meneliti apakah perubahan parameter vertex color dapat mempengaruhi bentuk animasi procedural 3d vegetasi musaceae serta pengaruh dari vertex color terhadap efek angin pada animasi prosedural 3d model vegetasi Musaceae. Berdasarkan pengamat dan perbandingan pada pengujian 5 sample vertex color diperoleh hasil bahwa perubahan parameter vertex color dapat mempengaruhi bentuk animasi procedural 3d vegetasi musaceae serta di peroleh kesimpulan Sample No.5 merupakan parameter vertex color yang tepat untuk menghasilkan animasi 3d model vegetasi Musaceae yang realistis. Kata kunci—3D, Animasi Prosedural, Vegetation  

  18. A Review of Models and Procedures for Synthetic Validation for Entry-Level Army Jobs

    Science.gov (United States)

    1988-12-01

    ARI Research Note 88-107 A Review of Models and Procedures for Co Synthetic Validation for Entry-LevelM -£.2 Army Jobs C i Jennifer L. Crafts, Philip...of Models and Procecures for Synthetic Validation for Entry-Level Army Jobs 12. PERSONAL AUTHOR(S) Crafts, Jennifer L., Szenas, Fhilip L., Chia, Wel...well as ability. ProJect A Validity Results Campbell (1986) and McHerry, Houigh. Thquam, Hanson, and Ashworth (1987) have conducted extensive

  19. A P-value model for theoretical power analysis and its applications in multiple testing procedures

    Directory of Open Access Journals (Sweden)

    Fengqing Zhang

    2016-10-01

    Full Text Available Abstract Background Power analysis is a critical aspect of the design of experiments to detect an effect of a given size. When multiple hypotheses are tested simultaneously, multiplicity adjustments to p-values should be taken into account in power analysis. There are a limited number of studies on power analysis in multiple testing procedures. For some methods, the theoretical analysis is difficult and extensive numerical simulations are often needed, while other methods oversimplify the information under the alternative hypothesis. To this end, this paper aims to develop a new statistical model for power analysis in multiple testing procedures. Methods We propose a step-function-based p-value model under the alternative hypothesis, which is simple enough to perform power analysis without simulations, but not too simple to lose the information from the alternative hypothesis. The first step is to transform distributions of different test statistics (e.g., t, chi-square or F to distributions of corresponding p-values. We then use a step function to approximate each of the p-value’s distributions by matching the mean and variance. Lastly, the step-function-based p-value model can be used for theoretical power analysis. Results The proposed model is applied to problems in multiple testing procedures. We first show how the most powerful critical constants can be chosen using the step-function-based p-value model. Our model is then applied to the field of multiple testing procedures to explain the assumption of monotonicity of the critical constants. Lastly, we apply our model to a behavioral weight loss and maintenance study to select the optimal critical constants. Conclusions The proposed model is easy to implement and preserves the information from the alternative hypothesis.

  20. [Effects of Sam68 gene silence on proliferation of acute T lymphoblastic leukemia cell line Jurkat].

    Science.gov (United States)

    Wang, Chi-Juan; Xu, Hua; Zhang, Hai-Rui; Wang, Jian; Lin, Ya-Ni; Pang, Tian-Xiang; Li, Qing-Hua

    2014-08-01

    This study was purpose to investigate the effect of Sam68 gene silence on proliferation of human acute T lymphoblastic leukemia cell line Jurkat. The sequence of shRNA targeting the site 531-552 of Sam68 mRNA was designed and chemically synthesized, then a single-vector lentiviral, Tet-inducible shRNA-Sam68 system (pLKO-Tet-On) was constructed; next the Jurkat cells were infected with lentivirus to create stable cell clones with regulatable Sam68 gene expression. The inhibitory efficiency of Sam68 gene was assayed by Real-time PCR and Western blot; the cell activity of Jurkat cells was detected with MTT assay; the change of colony forming potential of Jurkat cells was analyzed by colony forming test; the cell cycle distribution was tested by flow cytometry. The results indicated that the expression of Sam68 in experimental cells was statistically decreased as compared with that of the control cells; the cells activity and colony forming capacity of the Jurkat cells with Sam68 gene silence were significantly inhibited; with Sam68 gene silencing, the percentage of S phase cells was significantly increased, while the percentage of G2 phase cells was significantly decreased. It is concluded that the silencing Sam68 gene using shRNA interference can effectively inhibit the proliferation of human acute T lymphoblastic leukemia cell line Jurkat.

  1. Renormalization procedure for random tensor networks and the canonical tensor model

    CERN Document Server

    Sasakura, Naoki

    2015-01-01

    We discuss a renormalization procedure for random tensor networks, and show that the corresponding renormalization-group flow is given by the Hamiltonian vector flow of the canonical tensor model, which is a discretized model of quantum gravity. The result is the generalization of the previous one concerning the relation between the Ising model on random networks and the canonical tensor model with N=2. We also prove a general theorem which relates discontinuity of the renormalization-group flow and the phase transitions of random tensor networks.

  2. Combining Decision Diagrams and SAT Procedures for Efficient Symbolic Model Checking

    DEFF Research Database (Denmark)

    Williams, Poul Frederick; Biere, Armin; Clarke, Edmund M.

    2000-01-01

    in the specification of a 16 bit multiplier. As opposed to Bounded Model Checking (BMC) our method is complete in practice. Our technique is based on a quantification procedure that allows us to eliminate quantifiers in Quantified Boolean Formulas (QBF). The basic step of this procedure is the up-one operation...... for BEDs. In addition we list a number of important optimizations to reduce the number of basic steps. In particular the optimization rule of quantification-by-substitution turned out to be very useful: exists x : {g /\\ ( x f )} = g[f/x]. The rule is used (1) during fixed point iterations, (2) for deciding...

  3. Detection Procedure for a Single Additive Outlier and Innovational Outlier in a Bilinear Model

    Directory of Open Access Journals (Sweden)

    Azami Zaharim

    2007-01-01

    Full Text Available A single outlier detection procedure for data generated from BL(1,1,1,1 models is developed. It is carried out in three stages. Firstly, the measure of impact of an IO and AO denoted by IO ω , AO ω , respectively are derived based on least squares method. Secondly, test statistics and test criteria are defined for classifying an observation as an outlier of its respective type. Finally, a general single outlier detection procedure is presented to distinguish a particular type of outlier at a time point t.

  4. Glaucoma-inducing Procedure in an In Vivo Rat Model and Whole-mount Retina Preparation.

    Science.gov (United States)

    Gossman, Cynthia A; Linn, David M; Linn, Cindy

    2016-01-01

    Glaucoma is a disease of the central nervous system affecting retinal ganglion cells (RGCs). RGC axons making up the optic nerve carry visual input to the brain for visual perception. Damage to RGCs and their axons leads to vision loss and/or blindness. Although the specific cause of glaucoma is unknown, the primary risk factor for the disease is an elevated intraocular pressure. Glaucoma-inducing procedures in animal models are a valuable tool to researchers studying the mechanism of RGC death. Such information can lead to the development of effective neuroprotective treatments that could aid in the prevention of vision loss. The protocol in this paper describes a method of inducing glaucoma - like conditions in an in vivo rat model where 50 µl of 2 M hypertonic saline is injected into the episcleral venous plexus. Blanching of the vessels indicates successful injection. This procedure causes loss of RGCs to simulate glaucoma. One month following injection, animals are sacrificed and eyes are removed. Next, the cornea, lens, and vitreous are removed to make an eyecup. The retina is then peeled from the back of the eye and pinned onto sylgard dishes using cactus needles. At this point, neurons in the retina can be stained for analysis. Results from this lab show that approximately 25% of RGCs are lost within one month of the procedure when compared to internal controls. This procedure allows for quantitative analysis of retinal ganglion cell death in an in vivo rat glaucoma model.

  5. de regresión OLS y SAM

    Directory of Open Access Journals (Sweden)

    Carlos J. Vilalta y Perdomo

    2006-01-01

    Full Text Available El propósito de este trabajo es demostrar que debido a que algunos fenómenos sociales presentan variación espacial, la modelación de los mismos tiene implicaciones metodológicas importantes, y por lo tanto es recomendable utilizar una técnica de regresión que incorpore la espacialidad de los datos en su diseño. Se siguen dos procedimientos generales: primero se calcula el coeficiente de autocorrelación I de Moran para demostrar la espacialidad del comportamiento electoral en el México urbano entre 1994 y 2000; después se comparan dos técnicas de regresión, ols y sam. De la comparación se concluye que la técnica sam es más robusta que la ols con base en que la primera obtiene coeficientes de regresión más precisos y detecta efectos regionales estadísticamente significativos aun en la presencia de modelos con problemas de heterodasticidad.

  6. A Long-Term Memory Competitive Process Model of a Common Procedural Error. Part II: Working Memory Load and Capacity

    Science.gov (United States)

    2013-07-01

    A Long-Term Memory Competitive Process Model of a Common Procedural Error, Part II: Working Memory Load and Capacity Franklin P. Tamborello, II...00-00-2013 4. TITLE AND SUBTITLE A Long-Term Memory Competitive Process Model of a Common Procedural Error, Part II: Working Memory Load and...07370024.2011.601692 Tamborello, F. P., & Trafton, J. G. (2013). A long-term competitive process model of a common procedural error. In Proceedings of the 35th

  7. Longitudinal data analyses using linear mixed models in SPSS: concepts, procedures and illustrations.

    Science.gov (United States)

    Shek, Daniel T L; Ma, Cecilia M S

    2011-01-05

    Although different methods are available for the analyses of longitudinal data, analyses based on generalized linear models (GLM) are criticized as violating the assumption of independence of observations. Alternatively, linear mixed models (LMM) are commonly used to understand changes in human behavior over time. In this paper, the basic concepts surrounding LMM (or hierarchical linear models) are outlined. Although SPSS is a statistical analyses package commonly used by researchers, documentation on LMM procedures in SPSS is not thorough or user friendly. With reference to this limitation, the related procedures for performing analyses based on LMM in SPSS are described. To demonstrate the application of LMM analyses in SPSS, findings based on six waves of data collected in the Project P.A.T.H.S. (Positive Adolescent Training through Holistic Social Programmes) in Hong Kong are presented.

  8. A step-by-step procedure for pH model construction in aquatic systems

    Directory of Open Access Journals (Sweden)

    A. F. Hofmann

    2007-10-01

    Full Text Available We present, by means of a simple example, a comprehensive step-by-step procedure to consistently derive a pH model of aquatic systems. As pH modeling is inherently complex, we make every step of the model generation process explicit, thus ensuring conceptual, mathematical, and chemical correctness. Summed quantities, such as total inorganic carbon and total alkalinity, and the influences of modeled processes on them are consistently derived. The model is subsequently reformulated until numerically and computationally simple dynamical solutions, like a variation of the operator splitting approach (OSA and the direct substitution approach (DSA, are obtained. As several solution methods are pointed out, connections between previous pH modelling approaches are established. The final reformulation of the system according to the DSA allows for quantification of the influences of kinetic processes on the rate of change of proton concentration in models containing multiple biogeochemical processes. These influences are calculated including the effect of re-equilibration of the system due to a set of acid-base reactions in local equilibrium. This possibility of quantifying influences of modeled processes on the pH makes the end-product of the described model generation procedure a powerful tool for understanding the internal pH dynamics of aquatic systems.

  9. Approximation of skewed interfaces with tensor-based model reduction procedures: Application to the reduced basis hierarchical model reduction approach

    Science.gov (United States)

    Ohlberger, Mario; Smetana, Kathrin

    2016-09-01

    In this article we introduce a procedure, which allows to recover the potentially very good approximation properties of tensor-based model reduction procedures for the solution of partial differential equations in the presence of interfaces or strong gradients in the solution which are skewed with respect to the coordinate axes. The two key ideas are the location of the interface either by solving a lower-dimensional partial differential equation or by using data functions and the subsequent removal of the interface of the solution by choosing the determined interface as the lifting function of the Dirichlet boundary conditions. We demonstrate in numerical experiments for linear elliptic equations and the reduced basis-hierarchical model reduction approach that the proposed procedure locates the interface well and yields a significantly improved convergence behavior even in the case when we only consider an approximation of the interface.

  10. A double-step truncation procedure for large-scale shell-model calculations

    CERN Document Server

    Coraggio, L; Itaco, N

    2016-01-01

    We present a procedure that is helpful to reduce the computational complexity of large-scale shell-model calculations, by preserving as much as possible the role of the rejected degrees of freedom in an effective approach. Our truncation is driven first by the analysis of the effective single-particle energies of the original large-scale shell-model hamiltonian, so to locate the relevant degrees of freedom to describe a class of isotopes or isotones, namely the single-particle orbitals that will constitute a new truncated model space. The second step is to perform an unitary transformation of the original hamiltonian from its model space into the truncated one. This transformation generates a new shell-model hamiltonian, defined in a smaller model space, that retains effectively the role of the excluded single-particle orbitals. As an application of this procedure, we have chosen a realistic shell-model hamiltonian defined in a large model space, set up by seven and five proton and neutron single-particle orb...

  11. A Two-Dimensional Modeling Procedure to Estimate the Loss Equivalent Resistance Including the Saturation Effect

    Directory of Open Access Journals (Sweden)

    Rosa Ana Salas

    2013-11-01

    Full Text Available We propose a modeling procedure specifically designed for a ferrite inductor excited by a waveform in time domain. We estimate the loss resistance in the core (parameter of the electrical model of the inductor by means of a Finite Element Method in 2D which leads to significant computational advantages over the 3D model. The methodology is validated for an RM (rectangular modulus ferrite core working in the linear and the saturation regions. Excellent agreement is found between the experimental data and the computational results.

  12. A performance weighting procedure for GCMs based on explicit probabilistic models and accounting for observation uncertainty

    Science.gov (United States)

    Renard, Benjamin; Vidal, Jean-Philippe

    2016-04-01

    In recent years, the climate modeling community has put a lot of effort into releasing the outputs of multimodel experiments for use by the wider scientific community. In such experiments, several structurally distinct GCMs are run using the same observed forcings (for the historical period) or the same projected forcings (for the future period). In addition, several members are produced for a single given model structure, by running each GCM with slightly different initial conditions. This multiplicity of GCM outputs offers many opportunities in terms of uncertainty quantification or GCM comparisons. In this presentation, we propose a new procedure to weight GCMs according to their ability to reproduce the observed climate. Such weights can be used to combine the outputs of several models in a way that rewards good-performing models and discards poorly-performing ones. The proposed procedure has the following main properties: 1. It is based on explicit probabilistic models describing the time series produced by the GCMs and the corresponding historical observations, 2. It can use several members whenever available, 3. It accounts for the uncertainty in observations, 4. It assigns a weight to each GCM (all weights summing up to one), 5. It can also assign a weight to the "H0 hypothesis" that all GCMs in the multimodel ensemble are not compatible with observations. The application of the weighting procedure is illustrated with several case studies including synthetic experiments, simple cases where the target GCM output is a simple univariate variable and more realistic cases where the target GCM output is a multivariate and/or a spatial variable. These case studies illustrate the generality of the procedure which can be applied in a wide range of situations, as long as the analyst is prepared to make an explicit probabilistic assumption on the target variable. Moreover, these case studies highlight several interesting properties of the weighting procedure. In

  13. Penalized variable selection procedure for Cox models with semiparametric relative risk

    CERN Document Server

    Du, Pang; Liang, Hua; 10.1214/09-AOS780

    2010-01-01

    We study the Cox models with semiparametric relative risk, which can be partially linear with one nonparametric component, or multiple additive or nonadditive nonparametric components. A penalized partial likelihood procedure is proposed to simultaneously estimate the parameters and select variables for both the parametric and the nonparametric parts. Two penalties are applied sequentially. The first penalty, governing the smoothness of the multivariate nonlinear covariate effect function, provides a smoothing spline ANOVA framework that is exploited to derive an empirical model selection tool for the nonparametric part. The second penalty, either the smoothly-clipped-absolute-deviation (SCAD) penalty or the adaptive LASSO penalty, achieves variable selection in the parametric part. We show that the resulting estimator of the parametric part possesses the oracle property, and that the estimator of the nonparametric part achieves the optimal rate of convergence. The proposed procedures are shown to work well i...

  14. A Robbins-Monro procedure for a class of models of deformation

    CERN Document Server

    Fraysse, Philippe

    2012-01-01

    The paper deals with the statistical analysis of several data sets associated with shape invariant models with different translation, height and scaling parameters. We propose to estimate these parameters together with the common shape function. Our approach extends the recent work of Bercu and Fraysse to multivariate shape invariant models. We propose a very efficient Robbins-Monro procedure for the estimation of the translation parameters and we use these estimates in order to evaluate scale parameters. The main pattern is estimated by a weighted Nadaraya-Watson estimator. We provide almost sure convergence and asymptotic normality for all estimators. Finally, we illustrate the convergence of our estimation procedure on simulated data as well as on real ECG data.

  15. A fast and systematic procedure to develop dynamic models of bioprocesses: application to microalgae cultures

    Directory of Open Access Journals (Sweden)

    J. Mailier

    2010-09-01

    Full Text Available The purpose of this paper is to report on the development of a procedure for inferring black-box, yet biologically interpretable, dynamic models of bioprocesses based on sets of measurements of a few external components (biomass, substrates, and products of interest. The procedure has three main steps: (a the determination of the number of macroscopic biological reactions linking the measured components; (b the estimation of a first reaction scheme, which has interesting mathematical properties, but might lack a biological interpretation; and (c the "projection" (or transformation of this reaction scheme onto a biologically-consistent scheme. The advantage of the method is that it allows the fast prototyping of models for the culture of microorganisms that are not well documented. The good performance of the third step of the method is demonstrated by application to an example of microalgal culture.

  16. Manual ventilation and open suction procedures contribute to negative pressures in a mechanical lung model

    Science.gov (United States)

    Nakstad, Espen Rostrup; Opdahl, Helge; Heyerdahl, Fridtjof; Borchsenius, Fredrik; Skjønsberg, Ole Henning

    2017-01-01

    Introduction Removal of pulmonary secretions in mechanically ventilated patients usually requires suction with closed catheter systems or flexible bronchoscopes. Manual ventilation is occasionally performed during such procedures if clinicians suspect inadequate ventilation. Suctioning can also be performed with the ventilator entirely disconnected from the endotracheal tube (ETT). The aim of this study was to investigate if these two procedures generate negative airway pressures, which may contribute to atelectasis. Methods The effects of device insertion and suctioning in ETTs were examined in a mechanical lung model with a pressure transducer inserted distal to ETTs of 9 mm, 8 mm and 7 mm internal diameter (ID). A 16 Fr bronchoscope and 12, 14 and 16 Fr suction catheters were used at two different vacuum levels during manual ventilation and with the ETTs disconnected. Results During manual ventilation with ETTs of 9 mm, 8 mm and 7 mm ID, and bronchoscopic suctioning at moderate suction level, peak pressure (PPEAK) dropped from 23, 22 and 24.5 cm H2O to 16, 16 and 15 cm H2O, respectively. Maximum suction reduced PPEAK to 20, 17 and 11 cm H2O, respectively, and the end-expiratory pressure fell from 5, 5.5 and 4.5 cm H2O to –2, –6 and –17 cm H2O. Suctioning through disconnected ETTs (open suction procedure) gave negative model airway pressures throughout the duration of the procedures. Conclusions Manual ventilation and open suction procedures induce negative end-expiratory pressure during endotracheal suctioning, which may have clinical implications in patients who need high PEEP (positive end-expiratory pressure). PMID:28725445

  17. Winning Attitude & Dedication to Physical Therapy Keep Sam Schmidt on Track

    Science.gov (United States)

    Bosley, Nikki Prevenslik

    2006-01-01

    This article relates how Sam Schmidt returned to living a productive life after an accident left him with spinal cord injury. Schmidt was a former Indy Racing League driver who founded Sam Schmidt Motorsports after his accident in 2000. Schmidt's car hit the wall as he exited turn two during a practice session at Walt Disney World Speedway in…

  18. Regioselective patterning of multiple SAMs and applications in surface-guided smart microfluidics.

    Science.gov (United States)

    Chen, Chuanzhao; Xu, Pengcheng; Li, Xinxin

    2014-12-24

    A top-down nanofabrication technology is developed to integrate multiple SAMs (self-assembled monolayers) into regioselective patterns. With ultraviolet light exposure through regioselectively hollowed hard mask, an existing SAM at designated microregions can be removed and a dissimilar kind of SAM can be regrown there. By repeating the photolithography-like process cycle, diverse kinds of SAM building blocks can be laid out as a desired pattern in one microfluidic channel. In order to ensure high quality of the surface modifications, the SAMs are vapor-phase deposited before the channel is closed by a bonding process. For the first time the technique makes it possible to integrate three or more kinds of SAMs in one microchannel. The technique is very useful for multiplex surface functionalization of microfluidic chips where different segments of a microfluidic channel need to be individually modified with different SAMs or into arrayed pattern for surface-guided fluidic properties like hydrophobicity/philicity and/or oleophobicity/philicity, etc. The technique has been well validated by experimental demonstration of various surface-directed flow-guiding functions. By modifying a microchannel surface into an arrayed pattern of multi-SAM "two-tone" stripe array, surface-guiding-induced 3D swirling flow is generated in a microfluidic channel that experimentally exhibits quick oil/water mixing and high-efficiency oil-to-water chemical extraction.

  19. Chemical analyses of hydroxyapatite formation on SAM surfaces modified with COOH, NH(2), CH(3), and OH functions.

    Science.gov (United States)

    Hirata, Isao; Akamatsu, Mai; Fujii, Eri; Poolthong, Suchit; Okazaki, Masayuki

    2010-08-01

    Hydroxyapatite formation was examined at the surface of self-assembled monolayers (SAMs) modified with four functional groups, -COOH, -NH(2), -CH(3), and -OH. For COOH-SAM and NH(2)-SAM, scanning electron spectroscopic observation showed that flake-like sheet crystals covered the whole wafer and small broccoli-like crystals were observed occasionally on the flake-like crystal base layer. For CH(3)-SAM and OH-SAM, no flake-like sheet crystals were observed; broccoli-like crystals were observed in a dispersed manner for CH(3)-SAM, but in localized spots for OH-SAM. X-ray diffraction patterns showed a strong apatite pattern oriented toward the c-axis direction for COOH-SAM. ESCA analysis revealed distinct Ca, P, O peaks for COOH-, NH(2)-, CH(3)-, and OH-SAM. Surface plasmon resonance (SPR) analysis indicated that during the supply of supersaturated calcium phosphate solution, the deposition of precipitates increased monotonically with time for COOH-SAM, increased slightly for NH(2)-SAM, but little increase in deposition was detected for CH(3)-SAM and OH-SAM.

  20. Geostatistical Procedures for Developing Three-Dimensional Aquifer Models from Drillers' Logs

    Science.gov (United States)

    Bohling, G.; Helm, C.

    2013-12-01

    The Hydrostratigraphic Drilling Record Assessment (HyDRA) project is developing procedures for employing the vast but highly qualitative hydrostratigraphic information contained in drillers' logs in the development of quantitative three-dimensional (3D) depictions of subsurface properties for use in flow and transport models to support groundwater management practices. One of the project's objectives is to develop protocols for 3D interpolation of lithological data from drillers' logs, properly accounting for the categorical nature of these data. This poster describes the geostatistical procedures developed to accomplish this objective. Using a translation table currently containing over 62,000 unique sediment descriptions encountered during the transcription of over 15,000 logs in the Kansas High Plains aquifer, the sediment descriptions are translated into 71 standardized terms, which are then mapped into a small number of categories associated with different representative property (e.g., hydraulic conductivity [K]) values. Each log is partitioned into regular intervals and the proportion of each K category within each interval is computed. To properly account for their compositional nature, a logratio transform is applied to the proportions. The transformed values are then kriged to the 3D model grid and backtransformed to determine the proportion of each category within each model cell. Various summary measures can then be computed from the proportions, including a proportion-weighted average K and an entropy measure representing the degree of mixing of categories within each cell. We also describe a related cross-validation procedure for assessing log quality.

  1. Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models

    Science.gov (United States)

    Gotelli, Nicholas J.; Dorazio, Robert M.; Ellison, Aaron M.; Grossman, Gary D.

    2010-01-01

    Quantifying patterns of temporal trends in species assemblages is an important analytical challenge in community ecology. We describe methods of analysis that can be applied to a matrix of counts of individuals that is organized by species (rows) and time-ordered sampling periods (columns). We first developed a bootstrapping procedure to test the null hypothesis of random sampling from a stationary species abundance distribution with temporally varying sampling probabilities. This procedure can be modified to account for undetected species. We next developed a hierarchical model to estimate species-specific trends in abundance while accounting for species-specific probabilities of detection. We analysed two long-term datasets on stream fishes and grassland insects to demonstrate these methods. For both assemblages, the bootstrap test indicated that temporal trends in abundance were more heterogeneous than expected under the null model. We used the hierarchical model to estimate trends in abundance and identified sets of species in each assemblage that were steadily increasing, decreasing or remaining constant in abundance over more than a decade of standardized annual surveys. Our methods of analysis are broadly applicable to other ecological datasets, and they represent an advance over most existing procedures, which do not incorporate effects of incomplete sampling and imperfect detection.

  2. Sam Shepard's plays according to Slovenian theatre directors

    Directory of Open Access Journals (Sweden)

    Anina Oblak

    2003-12-01

    Full Text Available The article focuses on the productions of Sam Shepard's plays in Slovenia during 1985-2000 and the author of the paper primarily pays attention to the Slovenian directors' approach to Shepard's works and the problems that have arisen in the process. Five of Shepard's plays have been staged to date in Slovenia, two early works and three works of new realism. In interviews with the directors (Vinko Möderndorfer, Primož Bebler, Boris Kobal, Dušan Jovanovic and Boris Cavazza as well as three actresses and a choreographer (Alenka Vidrih, Barbara Babič, Vesna Jevnikar, Tanja Zgonc it has emerged that the transplantation of typically American issues to Slovenia and their treatment necessitated a different approach from the one normally taken by the Slovenian directors and actors. Shepard's plays being idiosyncratic, the theatre artists had to either accommodate his material or treat it with different methods that were adapted to suit the Slovenian environment.

  3. TWO-PROCEDURE OF MODEL RELIABILITY-BASED OPTIMIZATION FOR WATER DISTRIBUTION SYSTEMS

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Recently, considerable emphasis has been laid to the reliability-based optimization model for water distribution systems. But considerable computational effort is needed to determine the reliability-based optimal design of large networks, even of mid-sized networks. In this paper, a new methodology is presented for the reliability analysis for water distribution systems. This methodology consists of two procedures. The first is that the optimal design is constrained only by the pressure heads at demand nodes, done in GRG2. Because the reliability constrains are removed from the optimal problem, a number of simulations do not need to be conducted, so the computer time is greatly decreased. Then, the second procedure is a linear optimal search procedure. In this linear procedure, the optimal results obtained by GRG2 are adjusted by the reliability constrains. The results are a group of commercial diameters of pipes and the constraints of pressure heads and reliability at nodes are satisfied. Therefore, the computer burden is significantly decreased, and the reliability-based optimization is of more practical use.

  4. NaCo/SAM observations of sources at the Galactic Center

    Science.gov (United States)

    Sanchez-Bermudez, J.; Schödel, R.; Alberdi, A.; Pott, J. U.

    2012-07-01

    Sparse aperture masking (SAM) interferometry combined with Adaptive Optics (AO) is a technique that is uniquely suited to investigate structures near the diffraction limit of large telescopes. The strengths of the technique are a robust calibration of the Point Spread Function (PSF) while maintaining a relatively high dynamic range. We used SAM+AO observations to investigate the circumstellar environment of several bright sources with infrared excess in the central parsec of the Galaxy. For our observations, unstable atmospheric conditions as well as significant residuals after the background subtraction presented serious problems for the standard approach of calibrating SAM data via interspersed observations of reference stars. We circumvented these difficulties by constructing a synthesized calibrator directly from sources within the field-of-view. When observing crowded fields, this novel method can boost the efficiency of SAM observations because it renders interspersed calibrator observations unnecessary. Here, we presented the first NaCo/SAM images reconstructed using this method.

  5. Social activity method (SAM): A fractal language for mathematics

    Science.gov (United States)

    Dowling, Paul

    2013-09-01

    In this paper I shall present and develop my organisational language, social activity method (SAM), and illustrate some of its applications. I shall introduce a new scheme for modes of recontextualisation that enables the analysis of the ways in which one activity - which might be school mathematics or social research or any empirically observed regularity of practice - recontextualises the practice of another and I shall also present, deploy, and develop an existing scheme - domains of action - in an analysis of school mathematics examination papers and in the structuring of what I refer to as the esoteric domain. This domain is here conceived as a hybrid domain of, first, linguistic and extralinguistic resources that are unambiguously mathematical in terms of both expression and content and, second, pedagogic theory - often tacit - that enables the mathematical gaze onto other practices and so recontextualises them. A second and more general theme that runs through the paper is the claim that there is nothing that is beyond semiosis, that there is nothing to which we have direct access, unmediated by interpretation. This state of affairs has implications for mathematics education. Specifically, insofar as an individual's mathematical semiotic system is under continuous development - the curriculum never being graspable all at once - understanding - as a stable semiotic moment - of any aspect or object of mathematics is always localised to the individual and is at best transient, and the sequencing of such moments may well also be more individualised than consistent in some correspondence with the sequencing of the curriculum. This being the case, a concentration on understanding as a goal may well serve to inhibit the pragmatic acquisition and deployment of mathematical technologies, which should be the principal aim of mathematics teaching and learning. The paper is primarily concerned with mathematics education. SAM, however, is a language that is available for

  6. Fusion of range camera and photogrammetry: a systematic procedure for improving 3-D models metric accuracy.

    Science.gov (United States)

    Guidi, G; Beraldin, J A; Ciofi, S; Atzeni, C

    2003-01-01

    The generation of three-dimensional (3-D) digital models produced by optical technologies in some cases involves metric errors. This happens when small high-resolution 3-D images are assembled together in order to model a large object. In some applications, as for example 3-D modeling of Cultural Heritage, the problem of metric accuracy is a major issue and no methods are currently available for enhancing it. The authors present a procedure by which the metric reliability of the 3-D model, obtained through iterative alignments of many range maps, can be guaranteed to a known acceptable level. The goal is the integration of the 3-D range camera system with a close range digital photogrammetry technique. The basic idea is to generate a global coordinate system determined by the digital photogrammetric procedure, measuring the spatial coordinates of optical targets placed around the object to be modeled. Such coordinates, set as reference points, allow the proper rigid motion of few key range maps, including a portion of the targets, in the global reference system defined by photogrammetry. The other 3-D images are normally aligned around these locked images with usual iterative algorithms. Experimental results on an anthropomorphic test object, comparing the conventional and the proposed alignment method, are finally reported.

  7. GENERATION OF MULTI-LOD 3D CITY MODELS IN CITYGML WITH THE PROCEDURAL MODELLING ENGINE RANDOM3DCITY

    Directory of Open Access Journals (Sweden)

    F. Biljecki

    2016-09-01

    Full Text Available The production and dissemination of semantic 3D city models is rapidly increasing benefiting a growing number of use cases. However, their availability in multiple LODs and in the CityGML format is still problematic in practice. This hinders applications and experiments where multi-LOD datasets are required as input, for instance, to determine the performance of different LODs in a spatial analysis. An alternative approach to obtain 3D city models is to generate them with procedural modelling, which is – as we discuss in this paper – well suited as a method to source multi-LOD datasets useful for a number of applications. However, procedural modelling has not yet been employed for this purpose. Therefore, we have developed RANDOM3DCITY, an experimental procedural modelling engine for generating synthetic datasets of buildings and other urban features. The engine is designed to produce models in CityGML and does so in multiple LODs. Besides the generation of multiple geometric LODs, we implement the realisation of multiple levels of spatiosemantic coherence, geometric reference variants, and indoor representations. As a result of their permutations, each building can be generated in 392 different CityGML representations, an unprecedented number of modelling variants of the same feature. The datasets produced by RANDOM3DCITY are suited for several applications, as we show in this paper with documented uses. The developed engine is available under an open-source licence at Github at http://github.com/tudelft3d/Random3Dcity.

  8. Generation of Multi-Lod 3d City Models in Citygml with the Procedural Modelling Engine RANDOM3DCITY

    Science.gov (United States)

    Biljecki, F.; Ledoux, H.; Stoter, J.

    2016-09-01

    The production and dissemination of semantic 3D city models is rapidly increasing benefiting a growing number of use cases. However, their availability in multiple LODs and in the CityGML format is still problematic in practice. This hinders applications and experiments where multi-LOD datasets are required as input, for instance, to determine the performance of different LODs in a spatial analysis. An alternative approach to obtain 3D city models is to generate them with procedural modelling, which is - as we discuss in this paper - well suited as a method to source multi-LOD datasets useful for a number of applications. However, procedural modelling has not yet been employed for this purpose. Therefore, we have developed RANDOM3DCITY, an experimental procedural modelling engine for generating synthetic datasets of buildings and other urban features. The engine is designed to produce models in CityGML and does so in multiple LODs. Besides the generation of multiple geometric LODs, we implement the realisation of multiple levels of spatiosemantic coherence, geometric reference variants, and indoor representations. As a result of their permutations, each building can be generated in 392 different CityGML representations, an unprecedented number of modelling variants of the same feature. The datasets produced by RANDOM3DCITY are suited for several applications, as we show in this paper with documented uses. The developed engine is available under an open-source licence at Github at github.com/tudelft3d/Random3Dcity"target="_blank">http://github.com/tudelft3d/Random3Dcity.

  9. Analysis of a regional change in the sign of the SAM-temperature relationship in Antarctica

    Science.gov (United States)

    Marshall, Gareth J.; di Battista, Stefano; Naik, Sushant S.; Thamban, Meloth

    2011-01-01

    This study examines regional atmospheric circulation changes associated with a reversal in the sign of the relationship between the Southern Annular Mode (SAM) and near-surface temperatures at Halley station, East Antarctica, during the 1980s. We show that the key factor affecting the regional SAM-temperature relationship (STR) is the relative magnitude of two climatological low pressure centres to the west and east of the area, which determines the source region of air masses advected into the locality. The principal difference affecting the STR is shown to be a trend towards a significantly weaker climatological low (higher pressure) at ~20°E during a positive phase of the SAM. Specifically, it is variations in the phase and magnitude of the wave number three patterns of atmospheric circulation, the non-annular component of the SAM, which are the principal factors governing the regional STR. A similar reversal is observed in the sign of the correlation between the SAM and oxygen-isotope values from an ice core located some 1,200 km east of Halley. This relationship is examined throughout the 20th Century, by comparing the isotope data to SAM reconstructions, and demonstrates marked decadal variability. Thus, these data suggest that switches in the STR are more likely to reflect natural variability in the long-wave patterns over the Southern Ocean rather than the influence of an anthropogenic forcing. This finding is important when considering the potential utility of Antarctic isotope data as a proxy for the SAM.

  10. The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages.

    Science.gov (United States)

    Boccard, F; Smokvina, T; Pernodet, J L; Friedmann, A; Guérineau, M

    1989-03-01

    Streptomyces ambofaciens ATCC23877 and derivatives contain the 11-kb element pSAM2 present in an integrated state or as a free and integrated plasmid. This element, able to integrate site-specifically in the genome of different Streptomyces species, is conjugative and mobilizes chromosomal markers. Besides these plasmid functions, we have shown that the site-specific recombination system of pSAM2 presents strong similarities with that of several temperate phages. The integration event is promoted by a site-specific recombinase of the integrase family. The int gene encoding this integrase is closely linked to the plasmid attachment site (attP). A small open reading frame (ORF) overlaps the int gene and the predicted protein exhibits similarities with Xis proteins involved in phages excision. The integrated copy of pSAM2 in strain ATCC23877 is flanked by att sequences (attL and attR). Another att sequence (attX) is present in this strain and attX and attL are the boundaries of a 42-kb fragment (xSAM1) absent, as well as pSAM2, from S.ambofaciens DSM40697. Sequences partially similar to pSAM2 int gene are found near the chromosomal integration zone in both S.ambofaciens strains. The possible origin of pSAM2, an element carrying plasmid as well as phage features, is discussed.

  11. Sam68 exerts separable effects on cell cycle progression and apoptosis

    Directory of Open Access Journals (Sweden)

    Resnick Ross J

    2004-01-01

    Full Text Available Abstract Background The RNA-binding protein Sam68 has been implicated in a number of cellular processes, including transcription, RNA splicing and export, translation, signal transduction, cell cycle progression and replication of the human immunodeficiency virus and poliovirus. However, the precise impact it has on essential cellular functions remains largely obscure. Results In this report we show that conditional overexpression of Sam68 in fibroblasts results in both cell cycle arrest and apoptosis. Arrest in G1 phase of the cell cycle is associated with decreased levels of cyclins D1 and E RNA and protein, resulting in dramatically reduced Rb phosphorylation. Interestingly, cell cycle arrest does not require the specific RNA binding ability of Sam68. In marked contrast, induction of apoptosis by Sam68 absolutely requires a fully-functional RNA binding domain. Moreover, the anti-cancer agent trichostatin A potentiates Sam68-driven apoptosis. Conclusions For the first time we have shown that Sam68, an RNA binding protein with multiple apparent functions, exerts functionally separable effects on cell proliferation and survival, dependent on its ability to bind specifically to RNA. These findings shed new light on the ability of signal transducing RNA binding proteins to influence essential cell function. Moreover, the ability of a class of anti-cancer therapeutics to modulate its ability to promote apoptosis suggests that Sam68 status may impact some cancer treatments.

  12. Structural analysis of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis.

    Science.gov (United States)

    Park, Sun Cheol; Song, Wan Seok; Yoon, Sung-il

    2014-04-18

    S-adenosyl-L-methionine (SAM)-dependent methyltransferases (MTases) methylate diverse biological molecules using a SAM cofactor. The ytqB gene of Bacillus subtilis encodes a putative MTase and its biological function has never been characterized. To reveal the structural features and the cofactor binding mode of YtqB, we have determined the crystal structures of YtqB alone and in complex with its cofactor, SAM, at 1.9 Å and 2.2 Å resolutions, respectively. YtqB folds into a β-sheet sandwiched by two α-helical layers, and assembles into a dimeric form. Each YtqB monomer contains one SAM binding site, which shapes SAM into a slightly curved conformation and exposes the reactive methyl group of SAM potentially to a substrate. Our comparative structural analysis of YtqB and its homologues indicates that YtqB is a SAM-dependent class I MTase, and provides insights into the substrate binding site of YtqB.

  13. Friction Properties of OTS SAMs and Silicon Surface under Water Lubrication

    Institute of Scientific and Technical Information of China (English)

    WANG Xin; ZHANG Xiangjun; AHMED Imad; LIU Ying; WEN Shizhu

    2009-01-01

    The friction and wear properties of silicon surface covered with octadecyltrichloro-silane (OTS) self-assembled monolayers (SAMs) were investigated by a UMT-2 microtribometer with and without water as lubricant, and then compared with that of bare silicon surface. Dry friction measurement results show that OTS SAMs have a very low friction coefficient compared to bare silicon surface under lower sliding velocity and normal contact load. However, heavy wear occurs on OTS SAMs under higher contact stress and sliding velocity. Under water lubrication, OTS SAMs can prevent wear obviously and meanwhile present low coefficient of friction even under high velocities.The improved frictional and anti-wear property on OTS SAMs surface is attributed to the hydrophobic property of OTS and hydrodynamic effect of water. Furthermore, a wear critical phase diagram for OTS SAMs with and without water was proposed, which indicates that OTS SAMs working under water lubrication owns a wider range of available load and velocity to reduce friction and prevent wear.

  14. Polyamine uptake by DUR3 and SAM3 in Saccharomyces cerevisiae.

    Science.gov (United States)

    Uemura, Takeshi; Kashiwagi, Keiko; Igarashi, Kazuei

    2007-03-09

    It has been reported that GAP1 and AGP2 catalyze the uptake of polyamines together with amino acids in Saccharomyces cerevisiae. We have looked for polyamine-preferential uptake proteins in S. cerevisiae. DUR3 catalyzed the uptake of polyamines together with urea, and SAM3 was found to catalyze the uptake of polyamines together with S-adenosylmethionine, glutamic acid, and lysine. Polyamine uptake was greatly decreased in both DUR3- and SAM3-deficient cells. The K(m) values for putrescine and spermidine of DUR3 were 479 and 21.2 mum, respectively, and those of SAM3 were 433 and 20.7 mum, respectively. Polyamine stimulation of cell growth of a polyamine requiring mutant, which is deficient in ornithine decarboxylase, was not influenced by the disruption of GAP1 and AGP2, but it was diminished by the disruption of DUR3 and SAM3. Furthermore, the polyamine stimulation of cell growth of a polyamine-requiring mutant was completely inhibited by the disruption of both DUR3 and SAM3. The results indicate that DUR3 and SAM3 are major polyamine uptake proteins in yeast. We previously reported that polyamine transport protein kinase 2 regulates polyamine transport. It was found that DUR3 (but not SAM3) was activated by phosphorylation of Thr(250), Ser(251), and Thr(684) by polyamine transport protein kinase 2.

  15. A Computational Model of the Temporal Dynamics of Plasticity in Procedural Learning: Sensitivity to Feedback Timing

    Directory of Open Access Journals (Sweden)

    Vivian V. Valentin

    2014-07-01

    Full Text Available The evidence is now good that different memory systems mediate the learning of different types of category structures. In particular, declarative memory dominates rule-based (RB category learning and procedural memory dominates information-integration (II category learning. For example, several studies have reported that feedback timing is critical for II category learning, but not for RB category learning – results that have broad support within the memory systems literature. Specifically, II category learning has been shown to be best with feedback delays of 500ms compared to delays of 0 and 1000ms, and highly impaired with delays of 2.5 seconds or longer. In contrast, RB learning is unaffected by any feedback delay up to 10 seconds. We propose a neurobiologically detailed theory of procedural learning that is sensitive to different feedback delays. The theory assumes that procedural learning is mediated by plasticity at cortical-striatal synapses that are modified by dopamine-mediated reinforcement learning. The model captures the time-course of the biochemical events in the striatum that cause synaptic plasticity, and thereby accounts for the empirical effects of various feedback delays on II category learning.

  16. Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure.

    Science.gov (United States)

    Peter, Benjamin M; Wegmann, Daniel; Excoffier, Laurent

    2010-11-01

    Although most natural populations are genetically subdivided, they are often analysed as if they were panmictic units. In particular, signals of past demographic size changes are often inferred from genetic data by assuming that the analysed sample is drawn from a population without any internal subdivision. However, it has been shown that a bottleneck signal can result from the presence of some recent immigrants in a population. It thus appears important to contrast these two alternative scenarios in a model choice procedure to prevent wrong conclusions to be made. We use here an Approximate Bayesian Computation (ABC) approach to infer whether observed patterns of genetic diversity in a given sample are more compatible with it being drawn from a panmictic population having gone through some size change, or from one or several demes belonging to a recent finite island model. Simulations show that we can correctly identify samples drawn from a subdivided population in up to 95% of the cases for a wide range of parameters. We apply our model choice procedure to the case of the chimpanzee (Pan troglodytes) and find conclusive evidence that Western and Eastern chimpanzee samples are drawn from a spatially subdivided population. © 2010 Blackwell Publishing Ltd.

  17. The Role of 3-D Heart Models in Planning and Executing Interventional Procedures.

    Science.gov (United States)

    Grant, Elena K; Olivieri, Laura J

    2017-09-01

    Percutaneous interventions aimed at addressing congenital and structural heart disease are simultaneously becoming more common and more complex as time progresses. An increasing number of heart defects that had previously required open heart surgery can now be successfully addressed in the cardiac catheterization laboratory. Adequate preprocedural preparation for these novel, complex procedures is critical to ensure their success. Diagnostic data can be collected before the intervention and displayed in multiple formats during the procedure. Advanced cardiac imaging, including cardiac magnetic resonance and cardiac computed tomography form the basis of this preparatory information. Novel methods of displaying these images are becoming more widespread and more useful, including 3-D printed models, 3-D digital models displayed on a virtual or augmented reality system and 3-D digital models overlaid onto a fluoroscopy system. In this review we summarize these state-of-the-art technologies and how they are able to help interventional cardiologists push the boundaries of what is possible in the cardiac catheterization laboratory. Copyright © 2017 Canadian Cardiovascular Society. All rights reserved.

  18. Sam68 Mediates the Activation of Insulin and Leptin Signalling in Breast Cancer Cells.

    Directory of Open Access Journals (Sweden)

    Antonio Pérez-Pérez

    Full Text Available Obesity is a well-known risk factor for breast cancer development in postmenopausal women. High insulin and leptin levels seem to have a role modulating the growth of these tumours. Sam68 is an RNA-binding protein with signalling functions that has been found to be overexpressed in breast cancer. Moreover, Sam68 may be recruited to insulin and leptin signalling pathways, mediating its effects on survival, growth and proliferation in different cellular types. We aimed to study the expression of Sam68 and its phosphorylation level upon insulin and leptin stimulation, and the role of Sam68 in the proliferative effect and signalling pathways that are activated by insulin or leptin in human breast adenocarcinoma cells. In the human breast adenocarcinoma cell lines MCF7, MDA-MB-231 and BT-474, Sam68 protein quantity and gene expression were increased upon leptin or insulin stimulation, as it was checked by qPCR and immunoblot. Moreover, both insulin and leptin stimulation promoted an increase in Sam68 tyrosine phosphorylation and negatively regulated its RNA binding capacity. siRNA was used to downregulate Sam68 expression, which resulted in lower proliferative effects of both insulin and leptin, as well as a lower activation of MAPK and PI3K pathways promoted by both hormones. These effects may be partly explained by the decrease in IRS-1 expression by down-regulation of Sam68. These results suggest the participation of Sam68 in both leptin and insulin receptor signaling in human breast cancer cells, mediating the trophic effects of these hormones in proliferation and cellular growth.

  19. Multivariate Bias Correction Procedures for Improving Water Quality Predictions using Mechanistic Models

    Science.gov (United States)

    Libera, D.; Arumugam, S.

    2015-12-01

    Water quality observations are usually not available on a continuous basis because of the expensive cost and labor requirements so calibrating and validating a mechanistic model is often difficult. Further, any model predictions inherently have bias (i.e., under/over estimation) and require techniques that preserve the long-term mean monthly attributes. This study suggests and compares two multivariate bias-correction techniques to improve the performance of the SWAT model in predicting daily streamflow, TN Loads across the southeast based on split-sample validation. The first approach is a dimension reduction technique, canonical correlation analysis that regresses the observed multivariate attributes with the SWAT model simulated values. The second approach is from signal processing, importance weighting, that applies a weight based off the ratio of the observed and model densities to the model data to shift the mean, variance, and cross-correlation towards the observed values. These procedures were applied to 3 watersheds chosen from the Water Quality Network in the Southeast Region; specifically watersheds with sufficiently large drainage areas and number of observed data points. The performance of these two approaches are also compared with independent estimates from the USGS LOADEST model. Uncertainties in the bias-corrected estimates due to limited water quality observations are also discussed.

  20. Effects of modelling examples in complex procedural skills training: a randomised study.

    Science.gov (United States)

    Bjerrum, Anne Sofie; Hilberg, Ole; van Gog, Tamara; Charles, Peder; Eika, Berit

    2013-09-01

    Learning complex procedural skills, such as bronchoscopy, through simulation training, imposes a high cognitive load on novices. Example-based learning has been shown to be an effective way to reduce cognitive load and enhance learning outcomes. Prior research has shown that modelling examples, in which a human model demonstrates the skill to a learner, were effective for learning basic surgical skills. However, principles derived from simple skills training do not necessarily generalise to more complex skills. Therefore, the present study examined the effectiveness of integrating modelling examples into simulation training for a more complex procedural skill - bronchoscopy. Moreover, this study extended previous simulation studies by using a physical demonstration rather than video-based modelling examples. Forty-eight medical students were randomised into a modelling group and a control group. They all practised on eight bronchoscopy simulation cases individually, followed by standardised feedback from an instructor. Additionally, the modelling group watched three modelling examples of the simulated bronchoscopy, performed by the instructor. These modelling examples were interspersed between cases. Assessments were carried out at pre-, post- and 3-week retention tests with simulator-measured performance metrics. The primary outcome measure was the percentage of segments entered/minute. Other measures were wall collisions, red-out, the percentage of segments entered and the time to completion. Group differences were examined using repeated measures analysis of variance (anova). A clear learning curve was observed for both groups, but as hypothesised, the modelling group outperformed the control group on all parameters except the percentage of segments entered on the post-test and retained this superiority at the retention test. For the primary outcome measure, the percentage of segments entered/minute, the modelling group achieved a 46% higher score at the post

  1. A Comparison between Robust z and 0.3-Logit Difference Procedures in Assessing Stability of Linking Items for the Rasch Model

    Science.gov (United States)

    Huynh, Huynh; Rawls, Anita

    2011-01-01

    There are at least two procedures to assess item difficulty stability in the Rasch model: robust z procedure and "0.3 Logit Difference" procedure. The robust z procedure is a variation of the z statistic that reduces dependency on outliers. The "0.3 Logit Difference" procedure is based on experiences in Rasch linking for tests…

  2. Nitrous oxide emissions from cropland: a procedure for calibrating the DayCent biogeochemical model using inverse modelling

    Science.gov (United States)

    Rafique, Rashad; Fienen, Michael N.; Parkin, Timothy B.; Anex, Robert P.

    2013-01-01

    DayCent is a biogeochemical model of intermediate complexity widely used to simulate greenhouse gases (GHG), soil organic carbon and nutrients in crop, grassland, forest and savannah ecosystems. Although this model has been applied to a wide range of ecosystems, it is still typically parameterized through a traditional “trial and error” approach and has not been calibrated using statistical inverse modelling (i.e. algorithmic parameter estimation). The aim of this study is to establish and demonstrate a procedure for calibration of DayCent to improve estimation of GHG emissions. We coupled DayCent with the parameter estimation (PEST) software for inverse modelling. The PEST software can be used for calibration through regularized inversion as well as model sensitivity and uncertainty analysis. The DayCent model was analysed and calibrated using N2O flux data collected over 2 years at the Iowa State University Agronomy and Agricultural Engineering Research Farms, Boone, IA. Crop year 2003 data were used for model calibration and 2004 data were used for validation. The optimization of DayCent model parameters using PEST significantly reduced model residuals relative to the default DayCent parameter values. Parameter estimation improved the model performance by reducing the sum of weighted squared residual difference between measured and modelled outputs by up to 67 %. For the calibration period, simulation with the default model parameter values underestimated mean daily N2O flux by 98 %. After parameter estimation, the model underestimated the mean daily fluxes by 35 %. During the validation period, the calibrated model reduced sum of weighted squared residuals by 20 % relative to the default simulation. Sensitivity analysis performed provides important insights into the model structure providing guidance for model improvement.

  3. Comparison of In-Flight Measured and Computed Aeroelastic Damping: Modal Identification Procedures and Modeling Approaches

    Directory of Open Access Journals (Sweden)

    Roberto da Cunha Follador

    2016-04-01

    Full Text Available The Operational Modal Analysis technique is a methodology very often applied for the identification of dynamic systems when the input signal is unknown. The applied methodology is based on a technique to estimate the Frequency Response Functions and extract the modal parameters using only the structural dynamic response data, without assuming the knowledge of the excitation forces. Such approach is an adequate way for measuring the aircraft aeroelastic response due to random input, like atmospheric turbulence. The in-flight structural response has been measured by accelerometers distributed along the aircraft wings, fuselage and empennages. The Enhanced Frequency Domain Decomposition technique was chosen to identify the airframe dynamic parameters. This technique is based on the hypothesis that the system is randomly excited with a broadband spectrum with almost constant power spectral density. The system identification procedure is based on the Single Value Decomposition of the power spectral densities of system output signals, estimated by the usual Fast Fourier Transform method. This procedure has been applied to different flight conditions to evaluate the modal parameters and the aeroelastic stability trends of the airframe under investigation. The experimental results obtained by this methodology were compared with the predicted results supplied by aeroelastic numerical models in order to check the consistency of the proposed output-only methodology. The objective of this paper is to compare in-flight measured aeroelastic damping against the corresponding parameters computed from numerical aeroelastic models. Different aerodynamic modeling approaches should be investigated such as the use of source panel body models, cruciform and flat plate projection. As a result of this investigation it is expected the choice of the better aeroelastic modeling and Operational Modal Analysis techniques to be included in a standard aeroelastic

  4. An Overview of Models of Speaking Performance and Its Implications for the Development of Procedural Framework for Diagnostic Speaking Tests

    Science.gov (United States)

    Zhao, Zhongbao

    2013-01-01

    This paper aims at developing a procedural framework for the development and validation of diagnostic speaking tests. The researcher reviews the current available models of speaking performance, analyzes the distinctive features and then points out the implications for the development of a procedural framework for diagnostic speaking tests. On…

  5. Modelling CO2 flow in naturally fractured geological media using MINC and multiple subregion upscaling procedure

    Science.gov (United States)

    Tatomir, Alexandru Bogdan A. C.; Flemisch, Bernd; Class, Holger; Helmig, Rainer; Sauter, Martin

    2017-04-01

    Geological storage of CO2 represents one viable solution to reduce greenhouse gas emission in the atmosphere. Potential leakage of CO2 storage can occur through networks of interconnected fractures. The geometrical complexity of these networks is often very high involving fractures occurring at various scales and having hierarchical structures. Such multiphase flow systems are usually hard to solve with a discrete fracture modelling (DFM) approach. Therefore, continuum fracture models assuming average properties are usually preferred. The multiple interacting continua (MINC) model is an extension of the classic double porosity model (Warren and Root, 1963) which accounts for the non-linear behaviour of the matrix-fracture interactions. For CO2 storage applications the transient representation of the inter-porosity two phase flow plays an important role. This study tests the accuracy and computational efficiency of the MINC method complemented with the multiple sub-region (MSR) upscaling procedure versus the DFM. The two phase flow MINC simulator is implemented in the free-open source numerical toolbox DuMux (www.dumux.org). The MSR (Gong et al., 2009) determines the inter-porosity terms by solving simplified local single-phase flow problems. The DFM is considered as the reference solution. The numerical examples consider a quasi-1D reservoir with a quadratic fracture system , a five-spot radial symmetric reservoir, and a completely random generated fracture system. Keywords: MINC, upscaling, two-phase flow, fractured porous media, discrete fracture model, continuum fracture model

  6. Efficient Data Mining in SAMS through Association Rule

    Directory of Open Access Journals (Sweden)

    Mr. Rahul B. Diwate

    2014-05-01

    Full Text Available We propose a protocol for secure mining of association rules in distributed databases. Previous techniques all people deals with different database, now a day’s people also deals with the distributed database. Can we develop a kind of application in which the people can access the distributed data which is already store in remote location in encrypted format? This proposes system technique is used for efficient data mining in SAMS (Student Assessment Management System through association rules in distributed databases. The current leading techniques are that of Kantarcioglu and Clifton. This proposed system is ready to implements two methods, one that computes the union of private subsets that each of the interacting users hold, and another that tests the inclusion of an element held by one user in a subset held by another .We propose a protocol for secure mining through association rule consist a different level of execution process to secure storage of data and access of data. This paper will focus on such process for secure storage plus secure access of data

  7. Sam Goudsmit--His Physics and His Statesmanship

    Science.gov (United States)

    Bederson, Benjamin

    2010-03-01

    Sam Goudsmit was already a famous theoretical physicist in his thirties, mainly because of his co-discovery of electron spin with George Uhlenbeck while both were students of Paul Ehrenfest in Holland in 1925. He and Uhlenbeck continued their thriving careers at the University of Michigan. Goudsmit's style as a physicist was always to make as close a connection between theory and experiment as possible. Thus, for example, his development with his student Robert Bacher of the technique called ``fractional parentage'' used fruitfully in both atomic and nuclear physics to compute energy levels of unknown states in terms of know ones. He also delved deeply into problems related to determinations of nuclear spins and moments. Partly because of his service as scientific leader of the Alsos project at the end of WWII he became a leading statesman of science. I will describe some of his achievements both as a physicist and as a statesman, prior to his becoming Editor in Chief of the American Physical Society.

  8. Procedures for adjusting regional regression models of urban-runoff quality using local data

    Science.gov (United States)

    Hoos, A.B.; Sisolak, J.K.

    1993-01-01

    Statistical operations termed model-adjustment procedures (MAP?s) can be used to incorporate local data into existing regression models to improve the prediction of urban-runoff quality. Each MAP is a form of regression analysis in which the local data base is used as a calibration data set. Regression coefficients are determined from the local data base, and the resulting `adjusted? regression models can then be used to predict storm-runoff quality at unmonitored sites. The response variable in the regression analyses is the observed load or mean concentration of a constituent in storm runoff for a single storm. The set of explanatory variables used in the regression analyses is different for each MAP, but always includes the predicted value of load or mean concentration from a regional regression model. The four MAP?s examined in this study were: single-factor regression against the regional model prediction, P, (termed MAP-lF-P), regression against P,, (termed MAP-R-P), regression against P, and additional local variables (termed MAP-R-P+nV), and a weighted combination of P, and a local-regression prediction (termed MAP-W). The procedures were tested by means of split-sample analysis, using data from three cities included in the Nationwide Urban Runoff Program: Denver, Colorado; Bellevue, Washington; and Knoxville, Tennessee. The MAP that provided the greatest predictive accuracy for the verification data set differed among the three test data bases and among model types (MAP-W for Denver and Knoxville, MAP-lF-P and MAP-R-P for Bellevue load models, and MAP-R-P+nV for Bellevue concentration models) and, in many cases, was not clearly indicated by the values of standard error of estimate for the calibration data set. A scheme to guide MAP selection, based on exploratory data analysis of the calibration data set, is presented and tested. The MAP?s were tested for sensitivity to the size of a calibration data set. As expected, predictive accuracy of all MAP?s for

  9. A Tractable Model of the LTE Access Reservation Procedure for Machine-Type Communications

    DEFF Research Database (Denmark)

    Nielsen, Jimmy Jessen; Min Kim, Dong; Madueño, Germán Corrales;

    2015-01-01

    A canonical scenario in Machine-Type Communications (MTC) is the one featuring a large number of devices, each of them with sporadic traffic. Hence, the number of served devices in a single LTE cell is not determined by the available aggregate rate, but rather by the limitations of the LTE access...... reservation protocol. Specifically, the limited number of contention preambles and the limited amount of uplink grants per random access response are crucial to consider when dimensioning LTE networks for MTC. We propose a low-complexity model that encompasses these two limitations and allows us to evaluate...... on the preamble collisions. A comparison with the simulated LTE access reservation procedure that follows the 3GPP specifications, confirms that our model provides an accurate estimation of the system outage event and the number of supported MTC devices....

  10. A comparison of galaxy group luminosity functions from semi-analytic models

    NARCIS (Netherlands)

    Snaith, Owain N.; Gibson, Brad K.; Brook, Chris B.; Courty, Stéphanie; Sánchez-Blázquez, Patricia; Kawata, Daisuke; Knebe, Alexander; Sales, Laura V.

    Semi-analytic models (SAMs) are currently one of the primary tools with which we model statistically significant ensembles of galaxies. The underlying physical prescriptions inherent to each SAM are, in many cases, different from one another. Several SAMs have been applied to the dark matter merger

  11. Must, valge + hall : Sam Wagstaffi ja Robert Mapplethorpe'i portree / Madis Palm

    Index Scriptorium Estoniae

    Palm, Madis

    2008-01-01

    Dokumentaalfilm "Black, White & Gray: Sam Wagstaff and Robert Mapplethorpe" : autor ja režissöör James Crump : Ameerika Ühendriigid 2007. Filmi näidati filminädala "Art in America" raames Tallinnas

  12. Smoking-Attributable Mortality, Morbidity, and Economic Costs (SAMMEC) - Smoking-Attributable Mortality (SAM)

    Data.gov (United States)

    U.S. Department of Health & Human Services — 2005-2009. SAMMEC - Smoking-Attributable Mortality, Morbidity, and Economic Costs. Smoking-attributable mortality (SAM) is the number of deaths caused by cigarette...

  13. Smoking-Attributable Mortality, Morbidity, and Economic Costs (SAMMEC) - Smoking-Attributable Mortality (SAM)

    Data.gov (United States)

    U.S. Department of Health & Human Services — 2005-2009. SAMMEC - Smoking-Attributable Mortality, Morbidity, and Economic Costs. Smoking-attributable mortality (SAM) is the number of deaths caused by cigarette...

  14. Tandem SAM Domain Structure of Human Caskin1: A Presynaptic, Self-Assembling Scaffold for CASK

    Energy Technology Data Exchange (ETDEWEB)

    Stafford, Ryan L.; Hinde, Elizabeth; Knight, Mary Jane; Pennella, Mario A.; Ear, Jason; Digman, Michelle A.; Gratton, Enrico; Bowie, James U. (UCI); (UCLA)

    2012-02-07

    The synaptic scaffolding proteins CASK and Caskin1 are part of the fibrous mesh of proteins that organize the active zones of neural synapses. CASK binds to a region of Caskin1 called the CASK interaction domain (CID). Adjacent to the CID, Caskin1 contains two tandem sterile a motif (SAM) domains. Many SAM domains form polymers so they are good candidates for forming the fibrous structures seen in the active zone. We show here that the SAM domains of Caskin1 form a new type of SAM helical polymer. The Caskin1 polymer interface exhibits a remarkable segregation of charged residues, resulting in a high sensitivity to ionic strength in vitro. The Caskin1 polymers can be decorated with CASK proteins, illustrating how these proteins may work together to organize the cytomatrix in active zones.

  15. Role of SAM Chain Length in Enhancing the Sensitivity of Nanopillar Modified Electrodes for Glucose Detection

    Directory of Open Access Journals (Sweden)

    2009-02-01

    Full Text Available In this report, alkanethiol self assembled monolayers (SAM with two different chain lengths were used to immobilize the functionalizing enzyme (glucose oxidase onto gold nanopillar modified electrodes and the electrochemical processes of these functionalized electrodes in glucose detection were investigated. First, the formation of these SAMs on the nanopillar modified electrodes was characterized by the cyclic voltammetry and electrochemical impedance spectroscopy techniques, and then the detection sensitivity of these functionalized electrodes to glucose was evaluated by the amperometry technique. Results showed that the SAM of alkanethiols with a longer chain length resulted in a higher degree of surface coverage with less defect and a higher electron transfer resistance, whereas the SAM of alkanethiols with a shorter chain length gave rise to a higher detection sensitivity to glucose. This study sheds some new insight into how to enhance the sensing performance of nanopillar modified electrodes.

  16. Must, valge + hall : Sam Wagstaffi ja Robert Mapplethorpe'i portree / Madis Palm

    Index Scriptorium Estoniae

    Palm, Madis

    2008-01-01

    Dokumentaalfilm "Black, White & Gray: Sam Wagstaff and Robert Mapplethorpe" : autor ja režissöör James Crump : Ameerika Ühendriigid 2007. Filmi näidati filminädala "Art in America" raames Tallinnas

  17. Frequency response and design consideration of GaN SAM avalanche photodiodes

    Science.gov (United States)

    Xie, Feng; Yang, Guofeng; Zhou, Dong; Lu, Hai; Wang, Guosheng

    2016-11-01

    In this work, a method is developed for estimating the frequency response characteristics of GaN avalanche photodiodes (APDs) with separated absorption and multiplication regions (SAM). The method calculates the total diode current with varying frequency by solving transport equations analytically and uses a commercial device simulator as a supplement for determining the exact electrical field profile within the device. Due to the high carrier saturation velocity of GaN, a high-gain-bandwidth product over THz is found achievable for GaN SAM-APDs. The potential performances of GaN SAM-APDs with different structural designs are further compared through numerical studies. It is found that a close-to-reach-through design is attractive for simultaneously achieving both relatively low operation voltage and high working frequency. In addition, transit-time limit and RC-delay limit for the frequency response of GaN SAM-APDs are also discussed.

  18. Calibration of SAMs with Particle Swarm Optimization: an application using intermediate and low redshift data

    CERN Document Server

    Ruiz, Andrés N; Padilla, Nelson D; Domínguez, Mariano J; Tecce, Tomás E; Orsi, Álvaro; Yaryura, Yamila C; Lambas, Diego García; Gargiulo, Ignacio D; Arancibia, Alejandra M Muñoz

    2013-01-01

    We present a fast and accurate method to select an optimal set of parameters in semi-analytic models of galaxy formation and evolution (SAMs). Our approach compares the results of a model against a set of observables applying a stochastic technique called Particle Swarm Optimization (PSO), a self-learning algorithm for localizing minima in multidimensional spaces that outperforms traditional sampling methods in terms of computational cost. We apply the PSO technique to the SAG semi-analytic model combined with merger trees extracted from a standard {\\Lambda}CDM N-body simulation. From the full set of model parameters used for the baryonic processes followed in SAG, we select six for tuning and keep all others fixed. In order to evaluate the ability of the PSO algorithm to find the best set of parameters, we perform several calibrations using different combinations of observed properties, both locally (e.g. z=0 K-, bj - and r- band luminosity functions, the black hole (BH) mass to bulge mass relation) and at i...

  19. Bringing a Chemical Laboratory Named Sam to Mars on the 2011 Curiosity Rover

    Science.gov (United States)

    Mahaffy, P. R.; Bleacher, L.; Jones, A.; Atreya, S. K.; Manning, H. L.; Cabane, M.; Webster, C. R.; Sam Team

    2010-12-01

    Introduction: An important goal of upcoming missions to Mars is to understand if life could have developed there. The task of the Sample Analysis at Mars (SAM) suite of instruments [1] and the other Curiosity investigations [2] is to move us steadily toward that goal with an assessment of the habitability of our neighboring planet through a series of chemical and geological measurements. SAM is designed to search for organic compounds and inorganic volatiles and measure isotope ratios. Other instruments on Curiosity will provide elemental analysis and identify minerals. SAM will analyze both atmospheric samples and gases evolved from powdered rocks that may have formed billions of years ago with Curiosity providing access to interesting sites scouted by orbiting cameras and spectrometers. SAM Instrument Suite: SAM’s instruments are a Quadrupole Mass Spectrometer (QMS), a 6-column Gas Chromatograph (GC), and a 2-channel Tunable Laser Spectrometer (TLS). SAM can identify organic compounds in Mars rocks to sub-ppb sensitivity and secure precise isotope ratios for C, H, and O in carbon dioxide and water and measure trace levels of methane and its carbon 13 isotope. The SAM gas processing system consists of valves, heaters, pressure sensors, gas scrubbers and getters, traps, and gas tanks used for calibration or combustion experiments [2]. A variety of calibrant compounds interior and exterior to SAM will allow the science and engineering teams to assess SAM’s performance. SAM has been calibrated and tested in a Mars-like environment. Keeping Educators and the Public Informed: The Education and Public Outreach (EPO) goals of the SAM team are to make this complex chemical laboratory and its data widely available to educators, students, and the public. Formal education activities include developing templates for professional development workshops for educators to teach them about SAM and Curiosity, incorporating data into Mars Student Data Teams, and writing articles

  20. Identification of trans-acting factors regulating SamDC expression in Oryza sativa

    Energy Technology Data Exchange (ETDEWEB)

    Basu, Supratim, E-mail: supratim_genetics@yahoo.co.in [Department of Crop Soil and Environmental Sciences, University of Arkansas, Fayetteville, AR 72701 (United States); Division of Plant Biology, Bose Institute, Kolkata (India); Roychoudhury, Aryadeep [Post Graduate Department of Biotechnology, St. Xavier' s College (Autonomous), 30, Mother Teresa Sarani, Kolkata - 700016, West Bengal (India); Sengupta, Dibyendu N. [Division of Plant Biology, Bose Institute, Kolkata (India)

    2014-03-07

    Highlights: • Identification of cis elements responsible for SamDC expression by in silico analysis. • qPCR analysis of SamDC expression to abiotic and biotic stress treatments. • Detection of SamDC regulators using identified cis-elements as probe by EMSA. • Southwestern Blot analysis to predict the size of the trans-acting factors. - Abstract: Abiotic stress affects the growth and productivity of crop plants; to cope with the adverse environmental conditions, plants have developed efficient defense machinery comprising of antioxidants like phenolics and flavonoids, and osmolytes like polyamines. SamDC is a key enzyme in the polyamine biosynthesis pathway in plants. In our present communication we have done in silico analysis of the promoter region of SamDC to look for the presence of different cis-regulatory elements contributing to its expression. Based on the presence of different cis-regulatory elements we completed comparative analysis of SamDC gene expression in rice lamina of IR-29 and Nonabokra by qPCR in response to the abiotic stress treatments of salinity, drought, cold and the biotic stress treatments of ABA and light. Additionally, to explore the role of the cis-regulatory elements in regulating the expression of SamDC gene in plants we comparatively analyzed the binding of rice nuclear proteins prepared from IR-29 and Nonabokra undergoing various stress treatments. The intensity of the complex formed was low and inducible in IR-29 in contrast to Nonabokra. Southwestern blot analysis helped in predicting the size of the trans-acting factors binding to these cis-elements. To our knowledge this is the first report on the comprehensive analysis of SamDC gene expression in rice and identification of the trans-acting factors regulating its expression.

  1. The Combustion Experiment on the Sample Analysis at Mars (SAM) Instrument Suite on the Curiosity Rover

    Science.gov (United States)

    Stern, J. C.; Malespin, C. A.; Eigenbrode, J. L.; Graham, H. V.; Archer, P. D., Jr.; Brunner, A. E.; Freissinet, C.; Franz, H. B.; Fuentes, J.; Glavin, D. P.; hide

    2014-01-01

    The combustion experiment on the Sample Analysis at Mars (SAM) suite on Curiosity will heat a sample of Mars regolith in the presence of oxygen and measure composition of the evolved gases using quadrupole mass spectrometry (QMS) and tunable laser spectrometry (TLS). QMS will enable detection of combustion products such as CO, CO2, NO, and other oxidized species, while TLS will enable precise measurements of the abundance and carbon isotopic composition (delta(sup 13)C) of the evolved CO2 and hydrogen isotopic composition (deltaD) of H2O. SAM will perform a two-step combustion to isolate combustible materials below approx.550 C and above approx.550 C. The combustion experiment on SAM, if properly designed and executed, has the potential to answer multiple questions regarding the origins of volatiles seen thus far in SAM evolved gas analysis (EGA) on Mars. Constraints imposed by SAM and MSL time and power resources, as well as SAM consumables (oxygen gas), will limit the number of SAM combustion experiments, so it is imperative to design an experiment targeting the most pressing science questions. Low temperature combustion experiments will primarily target the quantification of carbon (and nitrogen) contributed by SAM wet chemistry reagants MTBSTFA (N-Methyl-N-tert-butyldimethylsilyltrifluoroacetamide) and DMF (Dimethylformamide), which have been identified in the background of blank and sample runs and may adsorb to the sample while the cup is in the Sample Manipulation System (SMS). In addition, differences between the sample and "blank" may yield information regarding abundance and delta(sup 13)C of bulk (both organic and inorganic) martian carbon. High temperature combustion experiments primarily aim to detect refractory organic matter, if present in Cumberland fines, as well as address the question of quantification and deltaD value of water evolution associated with hydroxyl hydrogen in clay minerals.

  2. Modeling pollen time series using seasonal-trend decomposition procedure based on LOESS smoothing.

    Science.gov (United States)

    Rojo, Jesús; Rivero, Rosario; Romero-Morte, Jorge; Fernández-González, Federico; Pérez-Badia, Rosa

    2017-02-01

    Analysis of airborne pollen concentrations provides valuable information on plant phenology and is thus a useful tool in agriculture-for predicting harvests in crops such as the olive and for deciding when to apply phytosanitary treatments-as well as in medicine and the environmental sciences. Variations in airborne pollen concentrations, moreover, are indicators of changing plant life cycles. By modeling pollen time series, we can not only identify the variables influencing pollen levels but also predict future pollen concentrations. In this study, airborne pollen time series were modeled using a seasonal-trend decomposition procedure based on LOcally wEighted Scatterplot Smoothing (LOESS) smoothing (STL). The data series-daily Poaceae pollen concentrations over the period 2006-2014-was broken up into seasonal and residual (stochastic) components. The seasonal component was compared with data on Poaceae flowering phenology obtained by field sampling. Residuals were fitted to a model generated from daily temperature and rainfall values, and daily pollen concentrations, using partial least squares regression (PLSR). This method was then applied to predict daily pollen concentrations for 2014 (independent validation data) using results for the seasonal component of the time series and estimates of the residual component for the period 2006-2013. Correlation between predicted and observed values was r = 0.79 (correlation coefficient) for the pre-peak period (i.e., the period prior to the peak pollen concentration) and r = 0.63 for the post-peak period. Separate analysis of each of the components of the pollen data series enables the sources of variability to be identified more accurately than by analysis of the original non-decomposed data series, and for this reason, this procedure has proved to be a suitable technique for analyzing the main environmental factors influencing airborne pollen concentrations.

  3. Modeling pollen time series using seasonal-trend decomposition procedure based on LOESS smoothing

    Science.gov (United States)

    Rojo, Jesús; Rivero, Rosario; Romero-Morte, Jorge; Fernández-González, Federico; Pérez-Badia, Rosa

    2016-08-01

    Analysis of airborne pollen concentrations provides valuable information on plant phenology and is thus a useful tool in agriculture—for predicting harvests in crops such as the olive and for deciding when to apply phytosanitary treatments—as well as in medicine and the environmental sciences. Variations in airborne pollen concentrations, moreover, are indicators of changing plant life cycles. By modeling pollen time series, we can not only identify the variables influencing pollen levels but also predict future pollen concentrations. In this study, airborne pollen time series were modeled using a seasonal-trend decomposition procedure based on LOcally wEighted Scatterplot Smoothing (LOESS) smoothing (STL). The data series—daily Poaceae pollen concentrations over the period 2006-2014—was broken up into seasonal and residual (stochastic) components. The seasonal component was compared with data on Poaceae flowering phenology obtained by field sampling. Residuals were fitted to a model generated from daily temperature and rainfall values, and daily pollen concentrations, using partial least squares regression (PLSR). This method was then applied to predict daily pollen concentrations for 2014 (independent validation data) using results for the seasonal component of the time series and estimates of the residual component for the period 2006-2013. Correlation between predicted and observed values was r = 0.79 (correlation coefficient) for the pre-peak period (i.e., the period prior to the peak pollen concentration) and r = 0.63 for the post-peak period. Separate analysis of each of the components of the pollen data series enables the sources of variability to be identified more accurately than by analysis of the original non-decomposed data series, and for this reason, this procedure has proved to be a suitable technique for analyzing the main environmental factors influencing airborne pollen concentrations.

  4. Modeling pollen time series using seasonal-trend decomposition procedure based on LOESS smoothing

    Science.gov (United States)

    Rojo, Jesús; Rivero, Rosario; Romero-Morte, Jorge; Fernández-González, Federico; Pérez-Badia, Rosa

    2017-02-01

    Analysis of airborne pollen concentrations provides valuable information on plant phenology and is thus a useful tool in agriculture—for predicting harvests in crops such as the olive and for deciding when to apply phytosanitary treatments—as well as in medicine and the environmental sciences. Variations in airborne pollen concentrations, moreover, are indicators of changing plant life cycles. By modeling pollen time series, we can not only identify the variables influencing pollen levels but also predict future pollen concentrations. In this study, airborne pollen time series were modeled using a seasonal-trend decomposition procedure based on LOcally wEighted Scatterplot Smoothing (LOESS) smoothing (STL). The data series—daily Poaceae pollen concentrations over the period 2006-2014—was broken up into seasonal and residual (stochastic) components. The seasonal component was compared with data on Poaceae flowering phenology obtained by field sampling. Residuals were fitted to a model generated from daily temperature and rainfall values, and daily pollen concentrations, using partial least squares regression (PLSR). This method was then applied to predict daily pollen concentrations for 2014 (independent validation data) using results for the seasonal component of the time series and estimates of the residual component for the period 2006-2013. Correlation between predicted and observed values was r = 0.79 (correlation coefficient) for the pre-peak period (i.e., the period prior to the peak pollen concentration) and r = 0.63 for the post-peak period. Separate analysis of each of the components of the pollen data series enables the sources of variability to be identified more accurately than by analysis of the original non-decomposed data series, and for this reason, this procedure has proved to be a suitable technique for analyzing the main environmental factors influencing airborne pollen concentrations.

  5. A computational model to investigate assumptions in the headturn preference procedure

    Directory of Open Access Journals (Sweden)

    Christina eBergmann

    2013-10-01

    Full Text Available In this paper we use a computational model to investigate four assumptions that are tacitly present in interpreting the results of studies on infants' speech processing abilities using the Headturn Preference Procedure (HPP: (1 behavioural differences originate in different processing; (2 processing involves some form of recognition; (3 words are segmented from connected speech; and (4 differences between infants should not affect overall results. In addition, we investigate the impact of two potentially important aspects in the design and execution of the experiments: (a the specific voices used in the two parts on HPP experiments (familiarisation and test and (b the experimenter's criterion for what is a sufficient headturn angle. The model is designed to be maximise cognitive plausibility. It takes real speech as input, and it contains a module that converts the output of internal speech processing and recognition into headturns that can yield real-time listening preference measurements. Internal processing is based on distributed episodic representations in combination with a matching procedure based on the assumptions that complex episodes can be decomposed as positive weighted sums of simpler constituents. Model simulations show that the first assumptions hold under two different definitions of recognition. However, explicit segmentation is not necessary to simulate the behaviours observed in infant studies. Differences in attention span between infants can affect the outcomes of an experiment. The same holds for the experimenter's decision criterion. The speakers used in experiments affect outcomes in complex ways that require further investigation. The paper ends with recommendations for future studies using the HPP.

  6. Impact of data quality and quantity and the calibration procedure on crop growth model calibration

    Science.gov (United States)

    Seidel, Sabine J.; Werisch, Stefan

    2014-05-01

    Crop growth models are a commonly used tool for impact assessment of climate variability and climate change on crop yields and water use. Process-based crop models rely on algorithms that approximate the main physiological plant processes by a set of equations containing several calibration parameters as well as basic underlying assumptions. It is well recognized that model calibration is essential to improve the accuracy and reliability of model predictions. However, model calibration and validation is often hindered by a limited quantity and quality of available data. Recent studies suggest that crop model parameters can only be derived from field experiments in which plant growth and development processes have been measured. To be able to achieve a reliable prediction of crop growth under irrigation or drought stress, the correct characterization of the whole soil-plant-atmosphere system is essential. In this context is the accurate simulation of crop development, yield and the soil water dynamics plays an important role. In this study we aim to investigate the importance of a site and cultivar-specific model calibration based on experimental data using the SVAT model Daisy. We investigate to which extent different data sets and different parameter estimation procedures affect particularly yield estimates, irrigation water demand and the soil water dynamics. The comprehensive experimental data has been derived from an experiment conducted in Germany where five irrigation regimes were imposed on cabbage. Data collection included continuous measurements of soil tension and soil water content in two plots at three depths, weekly measurements of LAI, plant heights, leaf-N-content, stomatal conductivity, biomass partitioning, rooting depth as well as harvested yields and duration of growing period. Three crop growth calibration strategies were compared: (1) manual calibration based on yield and duration of growing period, (2) manual calibration based on yield

  7. MODELING IN MAPLE AS THE RESEARCHING MEANS OF FUNDAMENTAL CONCEPTS AND PROCEDURES IN LINEAR ALGEBRA

    Directory of Open Access Journals (Sweden)

    Vasil Kushnir

    2016-05-01

    -th degree of a square matrix, to calculate matrix exponent, etc. The author creates four basic forms of canonical models of matrices and shows how to design matrices of similar transformations to these four forms. We introduce the programs-procedures for square matrices construction based on the selected models of canonical matrices. Then you can create a certain amount of various square matrices based on canonical matrix models, it allows to use individual learning technologies. The use of Maple-technology allows to automate the cumbersome and complex procedures for finding the transformation matrices of canonical form of a matrix, values of matrices functions, etc., which not only saves time but also attracts attention and efforts on understanding the above mentioned fundamental concepts of linear algebra and procedures for investigation of their properties. All these create favorable conditions for the use of fundamental concepts of linear algebra in scientific and research work of students and undergraduates using Maple-technology

  8. Sterols of Saccharomyces cerevisiae erg6 Knockout Mutant Expressing the Pneumocystis carinii S-Adenosylmethionine:Sterol C-24 Methyltransferase (SAM:SMT)

    Science.gov (United States)

    Kaneshiro, Edna S.; Johnston, Laura Q.; Nkinin, Stephenson W.; Romero, Becky I.; Giner, José-Luis

    2014-01-01

    The AIDS-associated lung pathogen Pneumocystis is classified as a fungus although Pneumocystis has several distinct features such as the absence of ergosterol, the major sterol of most fungi. The P. carinii S-adenosylmethionine:sterol C24-methyltransferase (SAM:SMT) enzyme, coded by the erg6 gene, transfers either one or two methyl groups to the C-24 position of the sterol side chain producing both C28 and C29 24-alkylsterols in approximately the same proportions whereas most fungal SAM:SMT transfer only one methyl group to the side chain. The sterol compositions of wild type Sacchromyces cerevisiae, the erg6 knockout mutant (Δerg6), and Δerg6 expressing the P. carinii or the S. cerevisiae erg6 gene were analyzed by a variety of chromatographic and spectroscopic procedures to examine functional complementation in the yeast expression system. Detailed sterol analyses were obtained using high performance liquid chromatography (HPLC) and proton nuclear magnetic resonance spectroscopy (1H-NMR). The P. carinii SAM:SMT in the Δerg6 restored its ability to produce the C28 sterol ergosterol as the major sterol, and also resulted in low levels of C29 sterols. This indicates that while the P. carinii SAM:SMT in the yeast Δerg6 cells was able to transfer a second methyl group to the side chain, the action of Δ24(28)-sterol reductase (coded by the erg4 gene) in the yeast cells prevented the formation and accumulation of as many C29 sterols as that found in P. carinii. PMID:25230683

  9. Improving the Prediction of Total Surgical Procedure Time Using Linear Regression Modeling.

    Science.gov (United States)

    Edelman, Eric R; van Kuijk, Sander M J; Hamaekers, Ankie E W; de Korte, Marcel J M; van Merode, Godefridus G; Buhre, Wolfgang F F A

    2017-01-01

    For efficient utilization of operating rooms (ORs), accurate schedules of assigned block time and sequences of patient cases need to be made. The quality of these planning tools is dependent on the accurate prediction of total procedure time (TPT) per case. In this paper, we attempt to improve the accuracy of TPT predictions by using linear regression models based on estimated surgeon-controlled time (eSCT) and other variables relevant to TPT. We extracted data from a Dutch benchmarking database of all surgeries performed in six academic hospitals in The Netherlands from 2012 till 2016. The final dataset consisted of 79,983 records, describing 199,772 h of total OR time. Potential predictors of TPT that were included in the subsequent analysis were eSCT, patient age, type of operation, American Society of Anesthesiologists (ASA) physical status classification, and type of anesthesia used. First, we computed the predicted TPT based on a previously described fixed ratio model for each record, multiplying eSCT by 1.33. This number is based on the research performed by van Veen-Berkx et al., which showed that 33% of SCT is generally a good approximation of anesthesia-controlled time (ACT). We then systematically tested all possible linear regression models to predict TPT using eSCT in combination with the other available independent variables. In addition, all regression models were again tested without eSCT as a predictor to predict ACT separately (which leads to TPT by adding SCT). TPT was most accurately predicted using a linear regression model based on the independent variables eSCT, type of operation, ASA classification, and type of anesthesia. This model performed significantly better than the fixed ratio model and the method of predicting ACT separately. Making use of these more accurate predictions in planning and sequencing algorithms may enable an increase in utilization of ORs, leading to significant financial and productivity related benefits.

  10. Precipitation projections under GCMs perspective and Turkish Water Foundation (TWF) statistical downscaling model procedures

    Science.gov (United States)

    Dabanlı, İsmail; Şen, Zekai

    2017-02-01

    The statistical climate downscaling model by the Turkish Water Foundation (TWF) is further developed and applied to a set of monthly precipitation records. The model is structured by two phases as spatial (regional) and temporal downscaling of global circulation model (GCM) scenarios. The TWF model takes into consideration the regional dependence function (RDF) for spatial structure and Markov whitening process (MWP) for temporal characteristics of the records to set projections. The impact of climate change on monthly precipitations is studied by downscaling Intergovernmental Panel on Climate Change-Special Report on Emission Scenarios (IPCC-SRES) A2 and B2 emission scenarios from Max Plank Institute (EH40PYC) and Hadley Center (HadCM3). The main purposes are to explain the TWF statistical climate downscaling model procedures and to expose the validation tests, which are rewarded in same specifications as "very good" for all stations except one (Suhut) station in the Akarcay basin that is in the west central part of Turkey. Eventhough, the validation score is just a bit lower at the Suhut station, the results are "satisfactory." It is, therefore, possible to say that the TWF model has reasonably acceptable skill for highly accurate estimation regarding standard deviation ratio (SDR), Nash-Sutcliffe efficiency (NSE), and percent bias (PBIAS) criteria. Based on the validated model, precipitation predictions are generated from 2011 to 2100 by using 30-year reference observation period (1981-2010). Precipitation arithmetic average and standard deviation have less than 5% error for EH40PYC and HadCM3 SRES (A2 and B2) scenarios.

  11. Improving the Prediction of Total Surgical Procedure Time Using Linear Regression Modeling

    Directory of Open Access Journals (Sweden)

    Eric R. Edelman

    2017-06-01

    Full Text Available For efficient utilization of operating rooms (ORs, accurate schedules of assigned block time and sequences of patient cases need to be made. The quality of these planning tools is dependent on the accurate prediction of total procedure time (TPT per case. In this paper, we attempt to improve the accuracy of TPT predictions by using linear regression models based on estimated surgeon-controlled time (eSCT and other variables relevant to TPT. We extracted data from a Dutch benchmarking database of all surgeries performed in six academic hospitals in The Netherlands from 2012 till 2016. The final dataset consisted of 79,983 records, describing 199,772 h of total OR time. Potential predictors of TPT that were included in the subsequent analysis were eSCT, patient age, type of operation, American Society of Anesthesiologists (ASA physical status classification, and type of anesthesia used. First, we computed the predicted TPT based on a previously described fixed ratio model for each record, multiplying eSCT by 1.33. This number is based on the research performed by van Veen-Berkx et al., which showed that 33% of SCT is generally a good approximation of anesthesia-controlled time (ACT. We then systematically tested all possible linear regression models to predict TPT using eSCT in combination with the other available independent variables. In addition, all regression models were again tested without eSCT as a predictor to predict ACT separately (which leads to TPT by adding SCT. TPT was most accurately predicted using a linear regression model based on the independent variables eSCT, type of operation, ASA classification, and type of anesthesia. This model performed significantly better than the fixed ratio model and the method of predicting ACT separately. Making use of these more accurate predictions in planning and sequencing algorithms may enable an increase in utilization of ORs, leading to significant financial and productivity related

  12. The U.S. Agency-Level Bid Protest Mechanism: A Model for Bid Challenge Procedures in Developing Nations

    Science.gov (United States)

    2005-08-31

    35 V. Bid Protest Procedures in the UNCITRAL Model Procurement Law and World Bank Development...Program...................................................................... 39 A. UNCITRAL Model Procurement Law...government procurement,5 and the assistance offered by the United Nations Committee on International Trade Law ( UNCITRAL )6 in the form of its Model Law

  13. Identification procedures for the charge-controlled nonlinear noise model of microwave electron devices

    Science.gov (United States)

    Filicori, Fabio; Traverso, Pier Andrea; Florian, Corrado; Borgarino, Mattia

    2004-05-01

    The basic features of the recently proposed Charge-Controlled Non-linear Noise (CCNN) model for the prediction of low-to-high-frequency noise up-conversion in electron devices under large-signal RF operation are synthetically presented. It is shown that the different noise generation phenomena within the device can be described by four equivalent noise sources, which are connected at the ports of a "noiseless" device model and are non-linearly controlled by the time-varying instantaneous values of the intrinsic device voltages. For the empirical identification of the voltage-controlled equivalent noise sources, different possible characterization procedures, based not only on conventional low-frequency noise data, but also on different types of noise measurements carried out under large-signal RF operating conditions are discussed. As an example of application, the measurement-based identification of the CCNN model for a GaInP heterojunction bipolar microwave transistor is presented. Preliminary validation results show that the proposed model can describe with adequate accuracy not only the low-frequency noise of the HBT, but also its phase-noise performance in a prototype VCO implemented by using the same monolithic GaAs technology.

  14. Role of Computational Modelling in Planning and Executing Interventional Procedures for Congenital Heart Disease.

    Science.gov (United States)

    Slesnick, Timothy C

    2017-09-01

    Increasingly, computational modelling and numerical simulations are used to help plan complex surgical and interventional cardiovascular procedures in children and young adults with congenital heart disease. From its origins more than 30 years ago, surgical planning with analysis of flow hemodynamics and energy loss/efficiency has helped design and implement many modifications to existing techniques. On the basis of patient-specific medical imaging, surgical planning allows accurate model production that can then be manipulated in a virtual surgical environment, with the proposed solutions finally tested with advanced computational fluid dynamics to evaluate the results. Applications include a broad range of congenital heart disease, including patients with single-ventricle anatomy undergoing staged palliation, those with arch obstruction, with double outlet right ventricle, or with tetralogy of Fallot. In the present work, we focus on clinical applications of this exciting field. We describe the framework for these techniques, including brief descriptions of the engineering principles applied and the interaction between "benchtop" data with medical decision-making. We highlight some early insights learned from pioneers over the past few decades, including refinements in Fontan baffle geometries and configurations. Finally, we offer a glimpse into exciting advances that are presently being explored, including use of modelling for transcatheter interventions. In this era of personalized medicine, computational modelling and surgical planning allows patient-specific tailoring of interventions to optimize clinical outcomes. Copyright © 2017 Canadian Cardiovascular Society. Published by Elsevier Inc. All rights reserved.

  15. Theory and procedures for finding a correct kinetic model for the bacteriorhodopsin photocycle.

    Science.gov (United States)

    Hendler, R W; Shrager, R; Bose, S

    2001-04-26

    In this paper, we present the implementation and results of new methodology based on linear algebra. The theory behind these methods is covered in detail in the Supporting Information, available electronically (Shragerand Hendler). In brief, the methods presented search through all possible forward sequential submodels in order to find candidates that can be used to construct a complete model for the BR-photocycle. The methodology is limited only to forward sequential models. If no such models are compatible with the experimental data,none will be found. The procedures apply objective tests and filters to eliminate possibilities that cannot be correct, thus cutting the total number of candidate sequences to be considered. In the current application,which uses six exponentials, the total sequences were cut from 1950 to 49. The remaining sequences were further screened using known experimental criteria. The approach led to a solution which consists of a pair of sequences, one with 5 exponentials showing BR* f L(f) M(f) N O BR and the other with three exponentials showing BR* L(s) M(s) BR. The deduced complete kinetic model for the BR photocycle is thus either a single photocycle branched at the L intermediate or a pair of two parallel photocycles. Reasons for preferring the parallel photocycles are presented. Synthetic data constructed on the basis of the parallel photocycles were indistinguishable from the experimental data in a number of analytical tests that were applied.

  16. A Novel Hyperbolization Procedure for The Two-Phase Six-Equation Flow Model

    Energy Technology Data Exchange (ETDEWEB)

    Samet Y. Kadioglu; Robert Nourgaliev; Nam Dinh

    2011-10-01

    We introduce a novel approach for the hyperbolization of the well-known two-phase six equation flow model. The six-equation model has been frequently used in many two-phase flow applications such as bubbly fluid flows in nuclear reactors. One major drawback of this model is that it can be arbitrarily non-hyperbolic resulting in difficulties such as numerical instability issues. Non-hyperbolic behavior can be associated with complex eigenvalues that correspond to characteristic matrix of the system. Complex eigenvalues are often due to certain flow parameter choices such as the definition of inter-facial pressure terms. In our method, we prevent the characteristic matrix receiving complex eigenvalues by fine tuning the inter-facial pressure terms with an iterative procedure. In this way, the characteristic matrix possesses all real eigenvalues meaning that the characteristic wave speeds are all real therefore the overall two-phase flowmodel becomes hyperbolic. The main advantage of this is that one can apply less diffusive highly accurate high resolution numerical schemes that often rely on explicit calculations of real eigenvalues. We note that existing non-hyperbolic models are discretized mainly based on low order highly dissipative numerical techniques in order to avoid stability issues.

  17. Mechanism and Correlated Factors of SAM Phenomenon after Aortic Valve Replacement

    Institute of Scientific and Technical Information of China (English)

    XU Jing; WEN Jianguo; SHU Liliang; LIU Chao; ZHANG Jingchao; ZHAO Wenzeng

    2007-01-01

    To investigate the mechanism and correlated factors of systolic anterior motion (SAM) phenomenon after aortic valve replacement, 48 patients with severe aortic valvular stenosis were studied. Tested by echo-Doppler one week after aortic valve replacement, the patients were divided into two groups: SAM group and non-SAM group. The data of the left ventricular end-diastolic diameters, the left ventricular end-systolic diameters, the left ventricular outflow diameters, the thickness of the interventricular septum, the posterior wall of left ventricle, the blood velocities of left ventricular outflow and intra-cavitary gradients were recorded and compared. The results showed that no patients died during or after the operation. The blood velocities of left ventricular outflow was increased significantly in 9 patients (>2.5 m/s), and 6 of them developed SAM phenomenon. There was significant difference in all indexes (P<0.05 or P<0.01) except the posterior wall of left ventricle (P>0.05) between two groups. These indicated that the present of SAM phenomenon after aortic valve replacement may be directly related to the increase of blood velocities of left ventricular outflow and intra-cavitary gradients. It is also suggested that smaller left ventricular diastolic diameters, left ventricular systolic diameters, left ventricular outflow diameters and hypertrophy of interventricular septum may be the anatomy basis of SAM phenomenon.

  18. ParaSAM: a parallelized version of the significance analysis of microarrays algorithm.

    Science.gov (United States)

    Sharma, Ashok; Zhao, Jieping; Podolsky, Robert; McIndoe, Richard A

    2010-06-01

    Significance analysis of microarrays (SAM) is a widely used permutation-based approach to identifying differentially expressed genes in microarray datasets. While SAM is freely available as an Excel plug-in and as an R-package, analyses are often limited for large datasets due to very high memory requirements. We have developed a parallelized version of the SAM algorithm called ParaSAM to overcome the memory limitations. This high performance multithreaded application provides the scientific community with an easy and manageable client-server Windows application with graphical user interface and does not require programming experience to run. The parallel nature of the application comes from the use of web services to perform the permutations. Our results indicate that ParaSAM is not only faster than the serial version, but also can analyze extremely large datasets that cannot be performed using existing implementations. A web version open to the public is available at http://bioanalysis.genomics.mcg.edu/parasam. For local installations, both the windows and web implementations of ParaSAM are available for free at http://www.amdcc.org/bioinformatics/software/parasam.aspx.

  19. Fabrication and Surface Properties of Composite Films of SAM/Pt/ZnO/SiO 2

    KAUST Repository

    Yao, Ke Xin

    2008-12-16

    Through synthetic architecture and functionalization with self-assembled monolayers (SAMs), complex nanocomposite films of SAM/Pt/ZnO/SiO2 have been facilely prepared in this work. The nanostructured films are highly uniform and porous, showing a wide range of tunable wettabilities from superhydrophilicity to superhydrophobicity (water contact angles: 0° to 170°). Our approach offers synthetic flexibility in controlling film architecture, surface topography, coating texture, crystallite size, and chemical composition of modifiers (e.g., SAMs derived from alkanethiols). For example, wettability properties of the nanocomposite films can be finely tuned with both inorganic phase (i.e., ZnO/SiO2 and Pt/ZnO/SiO2) and organic phase (i.e., SAMs on Pt/ZnO/SiO2). Due to the presence of catalytic components Pt/ZnO within the nanocomposites, surface reactions of the organic modifiers can further take place at room temperature and elevated temperatures, which provides a means for SAM formation and elimination. Because the Pt/ZnO forms an excellent pair of metal-semiconductors for photocatalysis, the anchored SAMs can also be modified or depleted by UV irradiation (i.e., the films possess self-cleaning ability). Potential applications of these nanocomposite films have been addressed. Our durability tests also confirm that the films are thermally stable and structurally robust in modification- regeneration cycles. © 2008 American Chemical Society.

  20. Alternative function for the mitochondrial SAM complex in biogenesis of alpha-helical TOM proteins.

    Science.gov (United States)

    Stojanovski, Diana; Guiard, Bernard; Kozjak-Pavlovic, Vera; Pfanner, Nikolaus; Meisinger, Chris

    2007-12-03

    The mitochondrial outer membrane contains two preprotein translocases: the general translocase of outer membrane (TOM) and the beta-barrel-specific sorting and assembly machinery (SAM). TOM functions as the central entry gate for nuclear-encoded proteins. The channel-forming Tom40 is a beta-barrel protein, whereas all Tom receptors and small Tom proteins are membrane anchored by a transmembrane alpha-helical segment in their N- or C-terminal portion. Synthesis of Tom precursors takes place in the cytosol, and their import occurs via preexisting TOM complexes. The precursor of Tom40 is then transferred to SAM for membrane insertion and assembly. Unexpectedly, we find that the biogenesis of alpha-helical Tom proteins with a membrane anchor in the C-terminal portion is SAM dependent. Each SAM protein is necessary for efficient membrane integration of the receptor Tom22, whereas assembly of the small Tom proteins depends on Sam37. Thus, the substrate specificity of SAM is not restricted to beta-barrel proteins but also includes the majority of alpha-helical Tom proteins.

  1. A general U-block model-based design procedure for nonlinear polynomial control systems

    Science.gov (United States)

    Zhu, Q. M.; Zhao, D. Y.; Zhang, Jianhua

    2016-10-01

    The proposition of U-model concept (in terms of 'providing concise and applicable solutions for complex problems') and a corresponding basic U-control design algorithm was originated in the first author's PhD thesis. The term of U-model appeared (not rigorously defined) for the first time in the first author's other journal paper, which established a framework for using linear polynomial control system design approaches to design nonlinear polynomial control systems (in brief, linear polynomial approaches → nonlinear polynomial plants). This paper represents the next milestone work - using linear state-space approaches to design nonlinear polynomial control systems (in brief, linear state-space approaches → nonlinear polynomial plants). The overall aim of the study is to establish a framework, defined as the U-block model, which provides a generic prototype for using linear state-space-based approaches to design the control systems with smooth nonlinear plants/processes described by polynomial models. For analysing the feasibility and effectiveness, sliding mode control design approach is selected as an exemplary case study. Numerical simulation studies provide a user-friendly step-by-step procedure for the readers/users with interest in their ad hoc applications. In formality, this is the first paper to present the U-model-oriented control system design in a formal way and to study the associated properties and theorems. The previous publications, in the main, have been algorithm-based studies and simulation demonstrations. In some sense, this paper can be treated as a landmark for the U-model-based research from intuitive/heuristic stage to rigour/formal/comprehensive studies.

  2. Experimental modeling of the chemical remanent magnetization and Thellier procedure on titanomagnetite-bearing basalts

    Science.gov (United States)

    Gribov, S. K.; Dolotov, A. V.; Shcherbakov, V. P.

    2017-03-01

    The results of the experimental studies on creating chemical and partial thermal remanent magnetizations (or their combination), which are imparted at the initial stage of the laboratory process of the oxidation of primary magmatic titanomagnetites (Tmts) contained in the rock, are presented. For creating chemical remanent magnetization, the samples of recently erupted Kamchatka basalts were subjected to 200-h annealing in air in the temperature interval from 400 to 500°C under the action of the magnetic field on the order of the Earth's magnetic field. After creation of this magnetization, the laboratory modeling of the Thellier-Coe and Wilson-Burakov paleointensity determination procedures was conducted on these samples. It is shown that when the primary magnetization is chemical, created at the initial stage of oxidation, and the paleointensity determined by these techniques is underestimated by 15-20% relative to its true values.

  3. A Robbins-Monro procedure for estimation in semiparametric regression models

    CERN Document Server

    Bercu, Bernard

    2011-01-01

    This paper is devoted to the parametric estimation of a shift together with the nonparametric estimation of a regression function in a semiparametric regression model. We implement a Robbins-Monro procedure very efficient and easy to handle. On the one hand, we propose a stochastic algorithm similar to that of Robbins-Monro in order to estimate the shift parameter. A preliminary evaluation of the regression function is not necessary for estimating the shift parameter. On the other hand, we make use of a recursive Nadaraya-Watson estimator for the estimation of the regression function. This kernel estimator takes in account the previous estimation of the shift parameter. We establish the almost sure convergence for both Robbins-Monro and Nadaraya-Watson estimators. The asymptotic normality of our estimates is also provided.

  4. Variational procedure for nuclear shell-model calculations and energy-variance extrapolation

    CERN Document Server

    Shimizu, Noritaka; Mizusaki, Takahiro; Honma, Michio; Tsunoda, Yusuke; Otsuka, Takaharu

    2012-01-01

    We discuss a variational calculation for nuclear shell-model calculations and propose a new procedure for the energy-variance extrapolation (EVE) method using a sequence of the approximated wave functions obtained by the variational calculation. The wave functions are described as linear combinations of the parity, angular-momentum projected Slater determinants, the energy of which is minimized by the conjugate gradient method obeying the variational principle. The EVE generally works well using the wave functions, but we found some difficult cases where the EVE gives a poor estimation. We discuss the origin of the poor estimation concerning shape coexistence. We found that the appropriate reordering of the Slater determinants allows us to overcome this difficulty and to reduce the uncertainty of the extrapolation.

  5. A model for analysing factors which may influence quality management procedures in higher education

    Directory of Open Access Journals (Sweden)

    Cătălin MAICAN

    2015-12-01

    Full Text Available In all universities, the Office for Quality Assurance defines the procedure for assessing the performance of the teaching staff, with a view to establishing students’ perception as regards the teachers’ activity from the point of view of the quality of the teaching process, of the relationship with the students and of the assistance provided for learning. The present paper aims at creating a combined model for evaluation, based on Data Mining statistical methods: starting from the findings revealed by the evaluations teachers performed to students, using the cluster analysis and the discriminant analysis, we identified the subjects which produced significant differences between students’ grades, subjects which were subsequently subjected to an evaluation by students. The results of these analyses allowed the formulation of certain measures for enhancing the quality of the evaluation process.

  6. New Inference Procedures for Semiparametric Varying-Coefficient Partially Linear Cox Models

    Directory of Open Access Journals (Sweden)

    Yunbei Ma

    2014-01-01

    Full Text Available In biomedical research, one major objective is to identify risk factors and study their risk impacts, as this identification can help clinicians to both properly make a decision and increase efficiency of treatments and resource allocation. A two-step penalized-based procedure is proposed to select linear regression coefficients for linear components and to identify significant nonparametric varying-coefficient functions for semiparametric varying-coefficient partially linear Cox models. It is shown that the penalized-based resulting estimators of the linear regression coefficients are asymptotically normal and have oracle properties, and the resulting estimators of the varying-coefficient functions have optimal convergence rates. A simulation study and an empirical example are presented for illustration.

  7. Solution Procedure for Transport Modeling in Effluent Recharge Based on Operator-Splitting Techniques

    Directory of Open Access Journals (Sweden)

    Shutang Zhu

    2008-01-01

    Full Text Available The coupling of groundwater movement and reactive transport during groundwater recharge with wastewater leads to a complicated mathematical model, involving terms to describe convection-dispersion, adsorption/desorption and/or biodegradation, and so forth. It has been found very difficult to solve such a coupled model either analytically or numerically. The present study adopts operator-splitting techniques to decompose the coupled model into two submodels with different intrinsic characteristics. By applying an upwind finite difference scheme to the finite volume integral of the convection flux term, an implicit solution procedure is derived to solve the convection-dominant equation. The dispersion term is discretized in a standard central-difference scheme while the dispersion-dominant equation is solved using either the preconditioned Jacobi conjugate gradient (PJCG method or Thomas method based on local-one-dimensional scheme. The solution method proposed in this study is applied to the demonstration project of groundwater recharge with secondary effluent at Gaobeidian sewage treatment plant (STP successfully.

  8. Off-site toxic consequence assessment: a simplified modeling procedure and case study.

    Science.gov (United States)

    Guarnaccia, Joe; Hoppe, Tom

    2008-11-15

    An assessment of off-site exposure from spills/releases of toxic chemicals can be conducted by compiling site-specific operational, geographic, demographic, and meteorological data and by using screening-level public-domain modeling tools (e.g., RMP Comp, ALOHA and DEGADIS). In general, the analysis is confined to the following: event-based simulations (allow for the use of known, constant, atmospheric conditions), known receptor distances (on the order of miles or less), short time scale for the distances considered (order of 10's of minutes or less), gently sloping rough terrain, dense and neutrally buoyant gas dispersion, known chemical inventory and infrastructure (used to define source-term), and known toxic endpoint (defines significance). While screening-level models are relatively simple to use, care must be taken to ensure that the results are meaningful. This approach allows one to assess risk from catastrophic release (e.g., via terrorism), or plausible release scenarios (related to standard operating procedures and industry standards). In addition, given receptor distance and toxic endpoint, the model can be used to predict the critical spill volume to realize significant off-site risk. This information can then be used to assess site storage and operation parameters and to determine the most economical and effective risk reduction measures to be applied.

  9. Prediction of melting temperatures in fluorescence in situ hybridization (FISH) procedures using thermodynamic models.

    Science.gov (United States)

    Fontenete, Sílvia; Guimarães, Nuno; Wengel, Jesper; Azevedo, Nuno Filipe

    2016-01-01

    The thermodynamics and kinetics of DNA hybridization, i.e. the process of self-assembly of one, two or more complementary nucleic acid strands, has been studied for many years. The appearance of the nearest-neighbor model led to several theoretical and experimental papers on DNA thermodynamics that provide reasonably accurate thermodynamic information on nucleic acid duplexes and allow estimation of the melting temperature. Because there are no thermodynamic models specifically developed to predict the hybridization temperature of a probe used in a fluorescence in situ hybridization (FISH) procedure, the melting temperature is used as a reference, together with corrections for certain compounds that are used during FISH. However, the quantitative relation between melting and experimental FISH temperatures is poorly described. In this review, various models used to predict the melting temperature for rRNA targets, for DNA oligonucleotides and for nucleic acid mimics (chemically modified oligonucleotides), will be addressed in detail, together with a critical assessment of how this information should be used in FISH.

  10. FRP-RC Beam in Shear: Mechanical Model and Assessment Procedure for Pseudo-Ductile Behavior

    Directory of Open Access Journals (Sweden)

    Floriana Petrone

    2014-07-01

    Full Text Available This work deals with the development of a mechanics-based shear model for reinforced concrete (RC elements strengthened in shear with fiber-reinforced polymer (FRP and a design/assessment procedure capable of predicting the failure sequence of resisting elements: the yielding of existing transverse steel ties and the debonding of FRP sheets/strips, while checking the corresponding compressive stress in concrete. The research aims at the definition of an accurate capacity equation, consistent with the requirement of the pseudo-ductile shear behavior of structural elements, that is, transverse steel ties yield before FRP debonding and concrete crushing. For the purpose of validating the proposed model, an extended parametric study and a comparison against experimental results have been conducted: it is proven that the common accepted rule of assuming the shear capacity of RC members strengthened in shear with FRP as the sum of the maximum contribution of both FRP and stirrups can lead to an unsafe overestimation of the shear capacity. This issue has been pointed out by some authors, when comparing experimental shear capacity values with the theoretical ones, but without giving a convincing explanation of that. In this sense, the proposed model represents also a valid instrument to better understand the mechanical behavior of FRP-RC beams in shear and to calculate their actual shear capacity.

  11. Proposed Core Competencies and Empirical Validation Procedure in Competency Modeling: Confirmation and Classification.

    Science.gov (United States)

    Baczyńska, Anna K; Rowiński, Tomasz; Cybis, Natalia

    2016-01-01

    Competency models provide insight into key skills which are common to many positions in an organization. Moreover, there is a range of competencies that is used by many companies. Researchers have developed core competency terminology to underline their cross-organizational value. The article presents a theoretical model of core competencies consisting of two main higher-order competencies called performance and entrepreneurship. Each of them consists of three elements: the performance competency includes cooperation, organization of work and goal orientation, while entrepreneurship includes innovativeness, calculated risk-taking and pro-activeness. However, there is lack of empirical validation of competency concepts in organizations and this would seem crucial for obtaining reliable results from organizational research. We propose a two-step empirical validation procedure: (1) confirmation factor analysis, and (2) classification of employees. The sample consisted of 636 respondents (M = 44.5; SD = 15.1). Participants were administered a questionnaire developed for the study purpose. The reliability, measured by Cronbach's alpha, ranged from 0.60 to 0.83 for six scales. Next, we tested the model using a confirmatory factor analysis. The two separate, single models of performance and entrepreneurial orientations fit quite well to the data, while a complex model based on the two single concepts needs further research. In the classification of employees based on the two higher order competencies we obtained four main groups of employees. Their profiles relate to those found in the literature, including so-called niche finders and top performers. Some proposal for organizations is discussed.

  12. Generic Procedure for Coupling the PHREEQC Geochemical Modeling Framework with Flow and Solute Transport Simulators

    Science.gov (United States)

    Wissmeier, L. C.; Barry, D. A.

    2009-12-01

    Computer simulations of water availability and quality play an important role in state-of-the-art water resources management. However, many of the most utilized software programs focus either on physical flow and transport phenomena (e.g., MODFLOW, MT3DMS, FEFLOW, HYDRUS) or on geochemical reactions (e.g., MINTEQ, PHREEQC, CHESS, ORCHESTRA). In recent years, several couplings between both genres of programs evolved in order to consider interactions between flow and biogeochemical reactivity (e.g., HP1, PHWAT). Software coupling procedures can be categorized as ‘close couplings’, where programs pass information via the memory stack at runtime, and ‘remote couplings’, where the information is exchanged at each time step via input/output files. The former generally involves modifications of software codes and therefore expert programming skills are required. We present a generic recipe for remotely coupling the PHREEQC geochemical modeling framework and flow and solute transport (FST) simulators. The iterative scheme relies on operator splitting with continuous re-initialization of PHREEQC and the FST of choice at each time step. Since PHREEQC calculates the geochemistry of aqueous solutions in contact with soil minerals, the procedure is primarily designed for couplings to FST’s for liquid phase flow in natural environments. It requires the accessibility of initial conditions and numerical parameters such as time and space discretization in the input text file for the FST and control of the FST via commands to the operating system (batch on Windows; bash/shell on Unix/Linux). The coupling procedure is based on PHREEQC’s capability to save the state of a simulation with all solid, liquid and gaseous species as a PHREEQC input file by making use of the dump file option in the TRANSPORT keyword. The output from one reaction calculation step is therefore reused as input for the following reaction step where changes in element amounts due to advection

  13. Modern meta-heuristics based on nonlinear physics processes: A review of models and design procedures

    Science.gov (United States)

    Salcedo-Sanz, S.

    2016-10-01

    Meta-heuristic algorithms are problem-solving methods which try to find good-enough solutions to very hard optimization problems, at a reasonable computation time, where classical approaches fail, or cannot even been applied. Many existing meta-heuristics approaches are nature-inspired techniques, which work by simulating or modeling different natural processes in a computer. Historically, many of the most successful meta-heuristic approaches have had a biological inspiration, such as evolutionary computation or swarm intelligence paradigms, but in the last few years new approaches based on nonlinear physics processes modeling have been proposed and applied with success. Non-linear physics processes, modeled as optimization algorithms, are able to produce completely new search procedures, with extremely effective exploration capabilities in many cases, which are able to outperform existing optimization approaches. In this paper we review the most important optimization algorithms based on nonlinear physics, how they have been constructed from specific modeling of a real phenomena, and also their novelty in terms of comparison with alternative existing algorithms for optimization. We first review important concepts on optimization problems, search spaces and problems' difficulty. Then, the usefulness of heuristics and meta-heuristics approaches to face hard optimization problems is introduced, and some of the main existing classical versions of these algorithms are reviewed. The mathematical framework of different nonlinear physics processes is then introduced as a preparatory step to review in detail the most important meta-heuristics based on them. A discussion on the novelty of these approaches, their main computational implementation and design issues, and the evaluation of a novel meta-heuristic based on Strange Attractors mutation will be carried out to complete the review of these techniques. We also describe some of the most important application areas, in

  14. A procedure for the change point problem in parametric models based on phi-divergence test-statistics

    CERN Document Server

    Batsidis, Apostolos; Pardo, Leandro; Zografos, Konstantinos

    2011-01-01

    This paper studies the change point problem for a general parametric, univariate or multivariate family of distributions. An information theoretic procedure is developed which is based on general divergence measures for testing the hypothesis of the existence of a change. For comparing the accuracy of the new test-statistic a simulation study is performed for the special case of a univariate discrete model. Finally, the procedure proposed in this paper is illustrated through a classical change-point example.

  15. The Search for Nitrates on Mars by the Sample Analysis at Mars (SAM) Instrument

    Science.gov (United States)

    Navarro-Gonzalez, Rafael; Stern, Jennifer C.; Freissinet, Caroline; McKay, Chirstopher P.; Sutter, Brad; Archer, P. Douglas, Jr.; McAdam, Amy; Franz, Heather; Coll, Partice J.; Glavin, Daniel Patrick; Eigenbrode, Jennifer L.; Wong, Mike; Atreya, Sushiil K.; Wray, James J.; Steele, Andrew; Prats, Benito D.; Szopa, Cyril; Coscia, David; Teinturier, Samuel; Buch, Arnaud; Leshin, Laurie A.; Ming, Douglas W.; Conrad, Pamela Gales; Cabane, Michel; Mahaffy, Paul R.; Grotzinger, John P.

    2013-01-01

    Planetary models suggest that nitrogen was abundant in the early Martian atmosphere as N2 but it was lost by sputtering and photochemical loss to space, impact erosion, and chemical oxidation to nitrates. A nitrogen cycle may exist on Mars where nitrates, produced early in Mars' history, may have been later decomposed back into N2 by the current impact flux. Nitrates are a fundamental source of nitrogen for terrestrial microorganisms, and they have evolved metabolic pathways to perform both oxidation and reduction to drive a complete biological nitrogen cycle. Therefore, the characterization of nitrogen in Martian soils is important to assess habitability of the Martian environment, particularly with respect to the presence of nitrates. The only previous mission that was designed to search for soil nitrates was the Phoenix mission but N-containing species were not detected by TEGA or the MECA WCL. Nitrates have been tentatively identified in Nakhla meteorites, and if nitrogen was oxidized on Mars, this has important implications for the habitability potential of Mars. Here we report the results from the Sample Analysis at Mars (SAM) instrument suite aboard the Curiosity rover during the first year of surface operations in Gale Crater. Samples from the Rocknest aeolian deposit and sedimentary rocks (John Klein) were heated to approx 835degC under helium flow and the evolved gases were analyzed by MS and GC-MS. Two and possibly three peaks may be associated with the release of m/z 30 at temperatures ranging from 180degC to 500degC. M/z 30 has been tentatively identified as NO; other plausible contributions include CH2O and an isotopologue of CO, 12C18O. NO, CH2O, and CO may be reaction products of reagents (MTBSTFA/DMF) carried from Earth for the wet chemical derivatization experiments with SAM and/or derived from indigenous soil nitrogenated organics. Laboratory analyses indicate that it is also possible that <550degC evolved NO is produced via reaction of HCl with

  16. Numerical identification procedure between a micro-Cauchy model and a macro-second gradient model for planar pantographic structures

    Science.gov (United States)

    Giorgio, Ivan

    2016-08-01

    In order to design the microstructure of metamaterials showing high toughness in extension (property to be shared with muscles), it has been recently proposed (Dell'Isola et al. in Z Angew Math Phys 66(6):3473-3498, 2015) to consider pantographic structures. It is possible to model such structures at a suitably small length scale (resolving in detail the interconnecting pivots/cylinders) using a standard Cauchy first gradient theory. However, the computational costs for such modelling choice are not allowing for the study of more complex mechanical systems including for instance many pantographic substructures. The microscopic model considered here is a quadratic isotropic Saint-Venant first gradient continuum including geometric nonlinearities and characterized by two Lamé parameters. The introduced macroscopic two-dimensional model for pantographic sheets is characterized by a deformation energy quadratic both in the first and second gradient of placement. However, as underlined in Dell'Isola et al. (Proc R Soc Lond A 472(2185):20150790, 2016), it is needed that the second gradient stiffness depends on the first gradient of placement if large deformations and large displacements configurations must be described. The numerical identification procedure presented in this paper consists in fitting the macro-constitutive parameters using several numerical simulations performed with the micro-model. The parameters obtained by the best fit identification in few deformation problems fit very well also in many others, showing that the reduced proposed model is suitable to get an effective model at relevantly lower computational effort. The presented numerical evidences suggest that a rigorous mathematical homogenization result most likely holds.

  17. 5-(4-pyridinyl)-1,3,4-oxadiazole-2-thiol on gold: SAM formation and electroactivity

    Energy Technology Data Exchange (ETDEWEB)

    Paulo, Tercio de F.; Silva, Maria A.S. da; Pinheiro, Solange de O.; Meyer, Emerson; Moreira, Icaro de S.; Diogenes, Izaura C.N. [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Dept. de Quimica Organica e Inorganica]. E-mail: izaura@dqoi.ufc.br; Pinheiro, Lucidalva S.; Freire, Jose A. [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Dept. de Fisica; Tanaka, Auro A. [Universidade Federal do Maranhao (UFMA), Sao Luis, MA (Brazil). Dept. de Quimica; Lima Neto, Pedro de [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Dept. de Quimica Analitica e Fisico Quimica

    2008-07-01

    5-(4-pyridinyl)-1,3,4-oxadiazole-2-thiol (Hpyt) spontaneously adsorbs on gold forming SAMs (self-assembled monolayers) that, based on STM (Scanning Tunneling Microscopy) and electrochemical data, contain pinholes through which [Fe(CN){sub 6}]{sup 4-} and [Ru(NH{sub 3}){sub 6}]{sup 3+} probe molecules access the underlying gold electrode. For the former molecule, the dependence of the faradaic current on the electrolyte solution pH value allowed the evaluation of the surface pKa as 4.2. The thermodynamic parameters {delta}H{sub ads} and {delta}G{sub ads} for the Hpyt adsorption process could be described by the Langmuir model and were calculated as -20.01 and -39.39 kJ mol{sup -1}, respectively. Electrodic redox reaction of cytochrome c metalloprotein was accessed by using the Hpyt SAM with a heterogeneous electron transfer rate constant of 2.29 x 10{sup -3} cm s{sup -1}. (author)

  18. Fluorocarbon Contamination from the Drill on the Mars Science Laboratory: Potential Science Impact on Detecting Martian Organics by Sample Analysis at Mars (SAM)

    Science.gov (United States)

    Eigenbrode, J. L.; McAdam, A.; Franz, H.; Freissinet, C.; Bower, H.; Floyd, M.; Conrad, P.; Mahaffy, P.; Feldman, J.; Hurowitz, J.; Evans, J.; Anderson, M.; Jandura, L.; Brown, K.; Logan, C.; Kuhn, S.; Anderson, R.; Beegle, L.; Limonadi, D.; Rainen, R.; Umland, J.

    2013-01-01

    Polytetrafluoroethylene (PTFE or trade name: Teflon by Dupont Co.) has been detected in rocks drilled during terrestrial testing of the Mars Science Laboratory (MSL) drilling hardware. The PTFE in sediments is a wear product of the seals used in the Drill Bit Assemblies (DBAs). It is expected that the drill assembly on the MSL flight model will also shed Teflon particles into drilled samples. One of the primary goals of the Sample Analysis at Mars (SAM) instrument suite on MSL is to test for the presence of martian organics in samples. Complications introduced by the potential presence of PTFE in drilled samples to the SAM evolved gas analysis (EGA or pyrolysisquadrupole mass spectrometry, pyr-QMS) and pyrolysis- gas chromatography mass spectrometry (Pyr- GCMS) experiments was investigated.

  19. A simulation study on the thermal and wetting behavior of alkane thiol SAM on gold (111) surface

    Institute of Scientific and Technical Information of China (English)

    J. Meena Devi

    2014-01-01

    Molecular dynamics simulations have been performed to investigate the structural, thermal and wetting properties of self-assembled monolayer (SAM) of alkane thiol on gold surface. The specific heat capacity of the gold SAM surface was found to linearly increase with the temperature in the range 100-300 K. It was found to drop down at 400 K and this decrease might be attributed to the disorder of the SAM chains. Hydration of gold SAM surface for two different terminal groups, namely methyl (hydrophobic), and hydroxy (hydrophilic) was studied at room temperature. The difference in their wetting behavior and the structure of their interfacial water were examined from the estimation of the z density profile, radial distribution function, hydrogen bonds and orientation of water dipoles in the interfacial region. The present simulation results suggest that the wetting behavior of the gold SAM surface can be modified by altering the terminal functional group of the SAM chains.

  20. SAM Sample preparation and its impact on the detection of organic compounds on Mars

    Science.gov (United States)

    Buch, Arnaud; Szopa, Cyril; Coll, Patrice; Freissinet, Caroline; Glavin, Daniel; Belmahdi, Imene; François, Pascaline; Millan, Maeva; Eigenbrode, Jennifer; navarro, Rafael; Stern, Jennifer; Pinnick, Veronica; Coscia, David; Teinturier, Samuel; Miller, Kristen; Summons, Roger; Mahaffy, Paul

    2014-05-01

    The wet chemistry experiments on the Sample Analysis at Mars (SAM) [1] experiment in the Curiosity rover of the Mars Science Laboratory mission supports extraction of polar organic compounds from solid samples that improves their detection either by increasing the release of chemical species from solid sample matrices, or by changing their chemical structure to make compounds more amenable to gas chromatography mass spectrometry (GCMS). The wet chemistry approach provides an alternative to the nominal inert-thermal desorption/pyrolysis analytical protocol used by SAM [1] that is more aptly suited for polar components. SAM, includes two different wet chemistry experiments: MTBSTFA derivatization [2-3] and TMAH thermochemolysis [4]. Here we report on the nature of the MTBSTFA derivatization experiment on SAM, the detection of MTBSTFA products in the SAM evolved gas analysis and GCMS experiments, and the implications of this detection. Solid sample were heated up to approximately 840°C at a rate of 35°C/min under He flow. For GC analyses, the majority of the gas released was trapped on a hydrocarbon trap (Tenax®) over a specific temperature range. Adsorbed volatiles on the GC injection trap (IT) were then released into the GC column (CLP-MXT 30m x 0.25mm x 0.25µm) by rapidly heating the IT to 300°C. Then, in order better understand the part of compounds detected coming from internal reaction we have performed several lab experiments to mimic the SAM device. We have investigated the thermal degradation of Tenax®, and possible interaction with MTBSTFA and perchlorate in the SAM trap (Tenax®) to better constrain interpretations of SAM results on Mars. References: [1] Mahaffy, P. et al. (2012) Space Sci Rev, 170, 401-478. [2] Buch, A. et al. (2009) J chrom. A, 43, 143-151. [3] Stalport, F. et al. (2012) Planet. Space Sci. 67: 1-13 [4] Geffroy-Rodier, C. et al. (2009) JAAP, 85, 454-459. Acknowledgements: SAM-GC team acknowledges support from the French Space Agency

  1. New insight into the electrochemical desorption of alkanethiol SAMs on gold.

    Science.gov (United States)

    Pensa, Evangelina; Vericat, Carolina; Grumelli, Doris; Salvarezza, Roberto C; Park, Sung Hyun; Longo, Gabriel S; Szleifer, Igal; Méndez De Leo, Lucila P

    2012-09-21

    A combination of Polarization Modulation Infrared Reflection Absorption Spectroscopy (PMIRRAS) under electrochemical control, Electrochemical Scanning Tunneling Microscopy (ECSTM) and Molecular Dynamics (MD) simulations has been used to shed light on the reductive desorption process of dodecanethiol (C12) and octadecanethiol (C18) SAMs on gold in aqueous electrolytes. Experimental PMIRRAS, ECSTM and MD simulations data for C12 desorption are consistent with formation of randomly distributed micellar aggregates stabilized by Na(+) ions, coexisting with a lying-down phase of molecules. The analysis of pit and Au island coverage before and after desorption is consistent with the thiolate-Au adatoms models. On the other hand, PMIRRAS and MD data for C18 indicate that the desorbed alkanethiolates adopt a Na(+) ion-stabilized bilayer of interdigitated alkanethiolates, with no evidence of lying down molecules. MD simulations also show that both the degree of order and tilt angle of the desorbed alkanethiolates change with the surface charge on the metal, going from bilayers to micelles. These results demonstrate the complexity of the alkanethiol desorption in the presence of water and the fact that chain length and counterions play a key role in a complex structure.

  2. Possible Detection of Nitrates on Mars by the Sample Analysis at Mars (SAM) Instrument

    Science.gov (United States)

    Navarro-Gonzalez, R.; Stern, J.; Sutter, B.; Archer, D.; McAdam, A.; Franz, H. B.; McKay, C. P.; Coll, P.; Cabane, M.; Ming, D. W.; Brunner, A. E.; Glavin, D.; Eigenbrode, J. L.; Jones, J. H.; Freissinet, C.; Leshin, L.; Wong, M.; Atreya, S.; Wray, J. J.; Steele, A.; Buch, A.; Prats, B. D.; Szopa, C.; Conrad, P.; Mahaffy, P.

    2013-01-01

    Planetary models suggest that nitrogen was abundant in the early Martian atmosphere as dinitrogen (N2). However, it has been lost by sputtering and photochemical loss to space [1, 2], impact erosion [3], and chemical oxidation to nitrates [4]. Nitrates, produced early in Mars history, are later decomposed back into N2 by the current impact flux [5], making possible a nitrogen cycle on Mars. It is estimated that a layer of about 3 m of pure NaNO3 should be distributed globally on Mars [5]. Nitrates are a fundamental source for nitrogen to terrestrial microorganisms. Therefore, the detection of soil nitrates is important to assess habitability in the Martian environment. The only previous mission that was designed to search for soil nitrates was the Phoenix mission but was unable to detect evolved N-containing species by TEGA and the MECA WCL [6]. Nitrates have been tentatively identified in the Nakhla meteorite [7]. The purpose of this work is to determine if nitrates were detected in first solid sample (Rocknest) in Gale Crater examined by the SAM instrument.

  3. Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE

    Science.gov (United States)

    Rohac, Roman; Amara, Patricia; Benjdia, Alhosna; Martin, Lydie; Ruffié, Pauline; Favier, Adrien; Berteau, Olivier; Mouesca, Jean-Marie; Fontecilla-Camps, Juan C.; Nicolet, Yvain

    2016-05-01

    Carbon-sulfur bond formation at aliphatic positions is a challenging reaction that is performed efficiently by radical S-adenosyl-L-methionine (SAM) enzymes. Here we report that 1,3-thiazolidines can act as ligands and substrates for the radical SAM enzyme HydE, which is involved in the assembly of the active site of [FeFe]-hydrogenase. Using X-ray crystallography, in vitro assays and NMR spectroscopy we identified a radical-based reaction mechanism that is best described as the formation of a C-centred radical that concomitantly attacks the sulfur atom of a thioether. To the best of our knowledge, this is the first example of a radical SAM enzyme that reacts directly on a sulfur atom instead of abstracting a hydrogen atom. Using theoretical calculations based on our high-resolution structures we followed the evolution of the electronic structure from SAM through to the formation of S-adenosyl-L-cysteine. Our results suggest that, at least in this case, the widely proposed and highly reactive 5‧-deoxyadenosyl radical species that triggers the reaction in radical SAM enzymes is not an isolable intermediate.

  4. Oxygen Attachment on Alkanethiolate SAMs Induced by Low-Energy Electron Irradiation

    Science.gov (United States)

    Massey, Sylvain; Bass, Andrew D.; Steffenhagen, Marie; Sanche, Léon

    2013-01-01

    Reactions of 18O2 with self-assembled monolayer (SAM) films of 1-dodecanethiol, 1-octadecanethiol, 1-butanethiol, and benzyl mercaptan chemisorbed on gold, were studied by the electron stimulated desorption (ESD) of anionic fragments over the incident electron energy range 2–20 eV. Dosing the SAMs with 18O2 at 50 K, results in the ESD of 18O− and 18OH−. Electron irradiation of samples prior to 18O2 deposition demonstrates that intensity of subsequent 18O− and 18OH− desorption signals increase with electron fluence and that absent electron pre-irradiation, no 18O− and 18OH− ESD signals are observed, since oxygen is unable to bind to the SAMs. A minimum incident electron energy of 6–7 eV is required to initiate the binding of 18O2 to the SAMs. O2 binding is proposed to proceed by the formation of CHx−1• radicals via resonant dissociative electron attachment and non-resonant C–H dissociation processes. The weaker signals of 18O− and 18OH− from short-chain SAMs are related to the latter’s resistance to electron induced damage, due to the charge-image dipole quenching and electron delocalization. Comparison between the present results and those for DNA oligonucleotides self-assembled on Au [Mirsaleh-Kohan, N. et al. J. Chem. Phys. 2012, 136, 235104] indicates that the oxygen binding mechanism is common to both systems. PMID:23537075

  5. Structural and functional comparison of HemN to other radical SAM enzymes.

    Science.gov (United States)

    Layer, Gunhild; Kervio, Eric; Morlock, Gaby; Heinz, Dirk W; Jahn, Dieter; Retey, Janos; Schubert, Wolf-Dieter

    2005-10-01

    Radical SAM enzymes have only recently been recognized as an ancient family sharing an unusual radical-based reaction mechanism. This late appreciation is due to the extreme oxygen sensitivity of most radical SAM enzymes, making their characterization particularly arduous. Nevertheless, realization that the novel apposition of the established cofactors S-adenosylmethionine and [4Fe-4S] cluster creates an explosive source of catalytic radicals, the appreciation of the sheer size of this previously neglected family, and the rapid succession of three successfully solved crystal structures within a year have ensured that this family has belatedly been noted. In this review, we report the characterization of two enzymes: the established radical SAM enzyme, HemN or oxygen-independent coproporphyrinogen III oxidase from Escherichia coli, and littorine mutase, a presumed radical SAM enzyme, responsible for the conversion of littorine to hyoscyamine in plants. The enzymes are compared to other radical SAM enzymes and in particular the three reported crystal structures from this family, HemN, biotin synthase and MoaA, are discussed.

  6. Celiac Disease in Children with Severe Acute Malnutrition (SAM): A Hospital Based Study.

    Science.gov (United States)

    Beniwal, Neetu; Ameta, Gaurav; Chahar, Chandra Kumar

    2017-05-01

    To evaluate the prevalence and clinical features of Celiac disease among children with severe acute malnutrition (SAM). This prospective observational study was conducted in PBM Children Hospital, Bikaner from July 2012 through December 2013. All consecutively admitted children with SAM were recruited. All subjects were screened for Celiac disease by serological test for IgA-anti tissue Transglutaminase (IgA tTG) antibodies. All seropositive children underwent upper gastrointestinal endoscopy for small bowel biopsy for the confirmation. Clinical features of patients with and without celiac disease were compared. The sero-prevalence (IgA tTg positivity) of Celiac disease was found to be 15.38% while prevalence of biopsy confirmed Celiac disease was 14.42% among SAM children. Abdominal distension, diarrhea, anorexia, constipation, pain in abdomen, vitamin deficiencies, edema, clubbing and mouth ulcers were more common in patients of Celiac disease compared to patients without Celiac disease but the difference was statistically significant only for abdominal distension and pain abdomen. There is a high prevalence of Celiac disease in SAM. Screening for Celiac disease (especially in presence of pain abdomen and abdominal distension) should be an essential part of work-up in all children with SAM.

  7. A lifesaving model: teaching advanced procedures on shelter animals in a tertiary care facility.

    Science.gov (United States)

    Spindel, Miranda E; MacPhail, Catriona M; Hackett, Timothy B; Egger, Erick L; Palmer, Ross H; Mama, Khursheed R; Lee, David E; Wilkerson, Nicole; Lappin, Michael R

    2008-01-01

    It is estimated that there are over 5 million homeless animals in the United States. While the veterinary profession continues to evolve in advanced specialty disciplines, animal shelters in every community lack resources for basic care. Concurrently, veterinary students, interns, and residents have less opportunity for practical primary and secondary veterinary care experiences in tertiary-care institutions that focus on specialty training. The two main goals of this project were (1) to provide practical medical and animal-welfare experiences to veterinary students, interns, and residents, under faculty supervision, and (2) to care for animals with medical problems beyond a typical shelter's technical capabilities and budget. Over a two-year period, 22 animals from one humane society were treated at Colorado State University Veterinary Medical Center. Initial funding for medical expenses was provided by PetSmart Charities. All 22 animals were successfully treated and subsequently adopted. The results suggest that collaboration between a tertiary-care facility and a humane shelter can be used successfully to teach advanced procedures and to save homeless animals. The project demonstrated that linking a veterinary teaching hospital's resources to a humane shelter's needs did not financially affect either institution. It is hoped that such a program might be used as a model and be perpetuated in other communities.

  8. An inverse modeling procedure to determine particle growth and nucleation rates from measured aerosol size distributions

    Directory of Open Access Journals (Sweden)

    B. Verheggen

    2006-01-01

    Full Text Available Classical nucleation theory is unable to explain the ubiquity of nucleation events observed in the atmosphere. This shows a need for an empirical determination of the nucleation rate. Here we present a novel inverse modeling procedure to determine particle nucleation and growth rates based on consecutive measurements of the aerosol size distribution. The particle growth rate is determined by regression analysis of the measured change in the aerosol size distribution over time, taking into account the effects of processes such as coagulation, deposition and/or dilution. This allows the growth rate to be determined with a higher time-resolution than can be deduced from inspecting contour plots ('banana-plots''. Knowing the growth rate as a function of time enables the evaluation of the time of nucleation of measured particles of a certain size. The nucleation rate is then obtained by integrating the particle losses from time of measurement to time of nucleation. The regression analysis can also be used to determine or verify the optimum value of other parameters of interest, such as the wall loss or coagulation rate constants. As an example, the method is applied to smog chamber measurements. This program offers a powerful interpretive tool to study empirical aerosol population dynamics in general, and nucleation and growth in particular.

  9. A comparison of the parameter estimating procedures for the Michaelis-Menten model.

    Science.gov (United States)

    Tseng, S J; Hsu, J P

    1990-08-23

    The performance of four parameter estimating procedures for the estimation of the adjustable parameters in the Michaelis-Menten model, the maximum initial rate Vmax, and the Michaelis-Menten constant Km, including Lineweaver & Burk transformation (L-B), Eadie & Hofstee transformation (E-H), Eisenthal & Cornish-Bowden transformation (ECB), and Hsu & Tseng random search (H-T) is compared. The analysis of the simulated data reveals the followings: (i) Vmax can be estimated more precisely than Km. (ii) The sum of square errors, from the smallest to the largest, follows the sequence H-T, E-H, ECB, L-B. (iii) Considering the sum of square errors, relative error, and computing time, the overall performance follows the sequence H-T, L-B, E-H, ECB, from the best to the worst. (iv) The performance of E-H and ECB are on the same level. (v) L-B and E-H are appropriate for pricesly measured data. H-T should be adopted for data whose error level are high. (vi) Increasing the number of data points has a positive effect on the performance of H-T, and a negative effect on the performance of L-B, E-H, and ECB.

  10. An iterative statistical tolerance analysis procedure to deal with linearized behavior models

    Institute of Scientific and Technical Information of China (English)

    Antoine DUMAS; Jean-Yves DANTAN; Nicolas GAYTON; Thomas BLES; Robin LOEBL

    2015-01-01

    Tolerance analysis consists of analyzing the impact of variations on the mechanism behavior due to the manufacturing process. The goal is to predict its quality level at the design stage. The technique involves computing probabilities of failure of the mechanism in a mass production process. The various analysis methods have to consider the component’s variations as random variables and the worst configuration of gaps for over-constrained systems. This consideration varies in function by the type of mechanism behavior and is realized by an optimization scheme combined with a Monte Carlo simulation. To simplify the optimization step, it is necessary to linearize the mechanism behavior into several parts. This study aims at analyzing the impact of the linearization strategy on the probability of failure estimation; a highly over-constrained mechanism with two pins and five cotters is used as an illustration for this study. The purpose is to strike a balance among model error caused by the linearization, computing time, and result accuracy. In addition, an iterative procedure is proposed for the assembly requirement to provide accurate results without using the entire Monte Carlo simulation.

  11. Evaluation of relevant information for optimal reflector modeling through data assimilation procedures

    Directory of Open Access Journals (Sweden)

    Argaud Jean-Philippe

    2015-01-01

    Full Text Available The goal of this study is to look after the amount of information that is mandatory to get a relevant parameters optimisation by data assimilation for physical models in neutronic diffusion calculations, and to determine what is the best information to reach the optimum of accuracy at the cheapest cost. To evaluate the quality of the optimisation, we study the covariance matrix that represents the accuracy of the optimised parameter. This matrix is a classical output of the data assimilation procedure, and it is the main information about accuracy and sensitivity of the parameter optimal determination. From these studies, we present some results collected from the neutronic simulation of nuclear power plants. On the basis of the configuration studies, it has been shown that with data assimilation we can determine a global strategy to optimise the quality of the result with respect to the amount of information provided. The consequence of this is a cost reduction in terms of measurement and/or computing time with respect to the basic approach.

  12. Detection of Organics at Mars: How Wet Chemistry Onboard SAM Helps

    Science.gov (United States)

    Buch, A.; Freissinet, Caroline; Szopa, C.; Glavin, D.; Coll, P.; Cabane, M.; Eigenbrode, J.; Navarro-Gonzalez, R.; Coscia, D.; Teinturier, S.; hide

    2013-01-01

    For the first time in the history of space exploration, a mission of interest to astrobiology could be able to analyze refractory organic compounds in the soil of Mars. Wet chemistry experiment allow organic components to be altered in such a way that improves there detection either by releasing the compounds from sample matricies or by changing the chemical structure to be amenable to analytical conditions. The latter is particular important when polar compounds are present. Sample Analysis at Mars (SAM), on the Curiosity rover of the Mars Science Laboratory mission, has onboard two wet chemistry experiments: derivatization and thermochemolysis. Here we report on the nature of the MTBSTFA derivatization experiment on SAM, the detection of MTBSTFA in initial SAM results, and the implications of this detection.

  13. Bringing a Chemical Laboratory Named Sam to Mars on the 2011 Curiosity Rover

    Science.gov (United States)

    Mahaffy, P. R.; Bleacher, L.; Jones, A.; Conrad, P. G.; Cabane, M.; Webster, C. R.; Atreya, S. A.; Manning, H.

    2010-01-01

    An important goal of upcoming missions to Mars is to understand if life could have developed there. The task of the Sample Analysis at Mars (SAM) suite of instruments [1] and the other Curiosity investigations [2] is to move us steadily toward that goal with an assessment of the habitability of our neighboring planet through a series of chemical and geological measurements. SAM is designed to search for organic compounds and inorganic volatiles and measure isotope ratios. Other instruments on Curiosity will provide elemental analysis and identify minerals. SAM will analyze both atmospheric samples and gases evolved from powdered rocks that may have formed billions of years ago with Curiosity providing access to interesting sites scouted by orbiting cameras and spectrometers.

  14. 1,25(OH)2D3 acts as a bone-forming agent in the hormone-independent senescence-accelerated mouse (SAM-P/6).

    Science.gov (United States)

    Duque, Gustavo; Macoritto, Michael; Dion, Natalie; Ste-Marie, Louis-Georges; Kremer, Richard

    2005-04-01

    Recent studies suggest that vitamin D signaling regulates bone formation. However, the overall effect of 1,25-dihydroxyvitamin D3 [1,25(OH)2D3] on bone turnover in vivo is still unclear. In this study, our aim was to examine the effect of 1,25(OH)2D3 on bone turnover in SAM-P/6, a hormone-independent mouse model of senile osteoporosis characterized by a decrease in bone formation. Male and female 4-mo-old SAM-P/6 mice were treated with 1,25(OH)2D3 (18 pmol/24 h) or vehicle for a period of 6 wk, and a group of age- and sex-matched nonosteoporotic animals was used as control. Bone mineral density (BMD) at the lumbar spine increased rapidly by >30 +/- 5% (P 2D3-treated SAM-P/6 animals, whereas BMD decreased significantly by 18 +/- 2% (P 2D3 significantly increased bone volume and other parameters of bone quality as well as subperiosteal bone formation rate compared with vehicle-treated SAM-P/6 mice. However, no effect on trabecular bone formation was observed. This was accompanied by a marked decrease in the number of osteoclasts and eroded surfaces. A significant increase in circulating bone formation markers and a decrease in bone resorption markers was also observed. Finally, bone marrow cells, obtained from 1,25(OH)2D3-treated animals and cultured in the absence of 1,25(OH)2D3, differentiated more intensely into osteoblasts compared with those derived from vehicle-treated mice cultured in the same conditions. Taken together, these findings demonstrate that 1,25(OH)2D3 acts simultaneously on bone formation and resorption to prevent the development of senile osteoporosis.

  15. SITE-94. Discrete-feature modelling of the Aespoe site: 4. Source data and detailed analysis procedures

    Energy Technology Data Exchange (ETDEWEB)

    Geier, J.E. [Golder Associates AB, Uppsala (Sweden)

    1996-12-01

    Specific procedures and source data are described for the construction and application of discrete-feature hydrological models for the vicinity of Aespoe. Documentation is given for all major phases of the work, including: Statistical analyses to develop and validate discrete-fracture network models, Preliminary evaluation, construction, and calibration of the site-scale model based on the SITE-94 structural model of Aespoe, Simulation of multiple realizations of the integrated model, and variations, to predict groundwater flow, and Evaluation of near-field and far-field parameters for performance assessment calculations. Procedures are documented in terms of the computer batch files and executable scripts that were used to perform the main steps in these analyses, to provide for traceability of results that are used in the SITE-94 performance assessment calculations. 43 refs.

  16. Data handling with SAM and art at the NOνA experiment

    Science.gov (United States)

    Aurisano, A.; Backhouse, C.; Davies, G. S.; Illingworth, R.; Mayer, N.; Mengel, M.; Norman, A.; Rocco, D.; Zirnstein, J.

    2015-12-01

    During operations, NOvA produces between 5,000 and 7,000 raw files per day with peaks in excess of 12,000. These files must be processed in several stages to produce fully calibrated and reconstructed analysis files. In addition, many simulated neutrino interactions must be produced and processed through the same stages as data. To accommodate the large volume of data and Monte Carlo, production must be possible both on the Fermilab grid and on off-site farms, such as the ones accessible through the Open Science Grid. To handle the challenge of cataloging these files and to facilitate their off-line processing, we have adopted the SAM system developed at Fermilab. SAM indexes files according to metadata, keeps track of each file's physical locations, provides dataset management facilities, and facilitates data transfer to off-site grids. To integrate SAM with Fermilab's art software framework and the NOvA production workflow, we have developed methods to embed metadata into our configuration files, art files, and standalone ROOT files. A module in the art framework propagates the embedded information from configuration files into art files, and from input art files to output art files, allowing us to maintain a complete processing history within our files. Embedding metadata in configuration files also allows configuration files indexed in SAM to be used as inputs to Monte Carlo production jobs. Further, SAM keeps track of the input files used to create each output file. Parentage information enables the construction of self-draining datasets which have become the primary production paradigm used at NOvA. In this paper we will present an overview of SAM at NOvA and how it has transformed the file production framework used by the experiment.

  17. Multiscale stochastic finite element method on random field modeling of geotechnical problems- a fast computing procedure

    Institute of Scientific and Technical Information of China (English)

    Xi F. XU

    2015-01-01

    The Green-function-based multiscale stochastic finite element method (MSFEM) has been formulated based on the stochastic variational principle. In this study a fast computing procedure based on the MSFEM is developed to solve random field geotechnical problems with a typical coefficient of variance less than 1. A unique fast computing advantage of the procedure enables computation performed only on those locations of interest, therefore saving a lot of computation. The numerical example on soil settlement shows that the procedure achieves significant computing efficiency compared with Monte Carlo method.

  18. Oxygen Attachment on Alkanethiolate SAMs Induced by Low-Energy Electron Irradiation

    OpenAIRE

    Massey, Sylvain; Bass, Andrew D.; Steffenhagen, Marie; Sanche, Léon

    2013-01-01

    Reactions of 18O2 with self-assembled monolayer (SAM) films of 1-dodecanethiol, 1-octadecanethiol, 1-butanethiol, and benzyl mercaptan chemisorbed on gold, were studied by the electron stimulated desorption (ESD) of anionic fragments over the incident electron energy range 2–20 eV. Dosing the SAMs with 18O2 at 50 K, results in the ESD of 18O− and 18OH−. Electron irradiation of samples prior to 18O2 deposition demonstrates that intensity of subsequent 18O− and 18OH− desorption signals increase...

  19. Mineral classification map using MF and SAM techniques: A case study in the Nohwa Island, Korea

    Energy Technology Data Exchange (ETDEWEB)

    Son, Young-Sun; Yoon, Wang-Jung [Department of Energy and Resources Engineering, Chonnam National University, Gwangju 500-757 (Korea, Republic of)

    2015-03-10

    The purpose of this study is to map pyprophyllite distribution at surface of the Nohwa deposit, Korea by using Advanced Spaceborne Thermal Emission and Reflectance Radiometer (ASTER) data. For this, combined Spectral Angle Mapper (SAM), and Matched Filtering (MF) technique based on mathematical algorithm was applied. The regional distribution of high-grade and low-grade pyrophyllite in the Nohwa deposit area could be differentiated by this method. The results of this study show that ASTER data analysis using combination of SAM and MF techniques will assist in exploration of pyrophyllite at the exposed surface.

  20. Mechanistic studies of the radical SAM enzyme spore photoproduct lyase (SPL).

    Science.gov (United States)

    Li, Lei

    2012-11-01

    Spore photoproduct lyase (SPL) repairs a special thymine dimer 5-thyminyl-5,6-dihydrothymine, which is commonly called spore photoproduct or SP at the bacterial early germination phase. SP is the exclusive DNA photo-damage product in bacterial endospores; its generation and swift repair by SPL are responsible for the spores' extremely high UV resistance. The early in vivo studies suggested that SPL utilizes a direct reversal strategy to repair the SP in the absence of light. The research in the past decade further established SPL as a radical SAM enzyme, which utilizes a tri-cysteine CXXXCXXC motif to harbor a [4Fe-4S] cluster. At the 1+ oxidation state, the cluster provides an electron to the S-adenosylmethionine (SAM), which binds to the cluster in a bidentate manner as the fourth and fifth ligands, to reductively cleave the CS bond associated with the sulfonium ion in SAM, generating a reactive 5'-deoxyadenosyl (5'-dA) radical. This 5'-dA radical abstracts the proR hydrogen atom from the C6 carbon of SP to initiate the repair process; the resulting SP radical subsequently fragments to generate a putative thymine methyl radical, which accepts a back-donated H atom to yield the repaired TpT. SAM is suggested to be regenerated at the end of each catalytic cycle; and only a catalytic amount of SAM is needed in the SPL reaction. The H atom source for the back donation step is suggested to be a cysteine residue (C141 in Bacillus subtilis SPL), and the H-atom transfer reaction leaves a thiyl radical behind on the protein. This thiyl radical thus must participate in the SAM regeneration process; however how the thiyl radical abstracts an H atom from the 5'-dA to regenerate SAM is unknown. This paper reviews and discusses the history and the latest progress in the mechanistic elucidation of SPL. Despite some recent breakthroughs, more questions are raised in the mechanistic understanding of this intriguing DNA repair enzyme. This article is part of a Special Issue

  1. Systematic Analysis Method of Shear-Wave Splitting:SAM Software System

    Institute of Scientific and Technical Information of China (English)

    Gao Yuan; Liu Xiqiang; Liang Wei; Hao Ping

    2004-01-01

    In order to make a more effective use of the data from regional digital seismograph networks and to promote the study on shear wave splitting and its application to earthquake stressforecasting, SAM software system, i.e., the software on systematic analysis method of shear wave splitting has been developed. This paper introduces the design aims, system structure,function and characteristics about the SAM software system and shows some graphical interfaces of data input and result output. Lastly, it discusses preliminarily the study of shear wave splitting and its application to earthquake forecasting.

  2. Rhodium deposition onto a 4-mercaptopyridine SAM on Au(1 1 1)

    Energy Technology Data Exchange (ETDEWEB)

    Manolova, M. [Institute of Electrochemistry, University of Ulm, 89069 Ulm (Germany); Kayser, M. [Institute of Electrochemistry, University of Ulm, 89069 Ulm (Germany); Kolb, D.M. [Institute of Electrochemistry, University of Ulm, 89069 Ulm (Germany)]. E-mail: dieter.kolb@uni-ulm.de; Boyen, H.-G. [Institute of Solid State Physics, University of Ulm, 89069 Ulm (Germany); Ziemann, P. [Institute of Solid State Physics, University of Ulm, 89069 Ulm (Germany); Mayer, D. [BASF Electronic Materials GmbH, 67056 Ludwigshafen (Germany); Wirth, A. [BASF Electronic Materials GmbH, 67056 Ludwigshafen (Germany)

    2007-02-10

    The application of a recently developed method for the deposition of Pd and Pt on top of a SAM, has been successfully extended to Rh, thus proving the versatility of the new concept. Experimental evidence from cyclic voltammetry, in situ STM and ex situ X-ray photoemission spectroscopy is presented for the deposition of monoatomic high rhodium islands onto a 4-mercaptopyridine self-assembled monolayer on a Au(1 1 1) electrode. By repetitive complexation of the Rh ions to the ring-nitrogen and reduction in a Rh-ion free solution, an almost completely covered SAM is obtained. The consequences of making contacts for molecular electronics are briefly discussed.

  3. Quantitative modeling of the accuracy in registering preoperative patient-specific anatomic models into left atrial cardiac ablation procedures

    Energy Technology Data Exchange (ETDEWEB)

    Rettmann, Maryam E., E-mail: rettmann.maryam@mayo.edu; Holmes, David R.; Camp, Jon J.; Cameron, Bruce M.; Robb, Richard A. [Biomedical Imaging Resource, Mayo Clinic College of Medicine, Rochester, Minnesota 55905 (United States); Kwartowitz, David M. [Department of Bioengineering, Clemson University, Clemson, South Carolina 29634 (United States); Gunawan, Mia [Department of Biochemistry and Molecular and Cellular Biology, Georgetown University, Washington D.C. 20057 (United States); Johnson, Susan B.; Packer, Douglas L. [Division of Cardiovascular Diseases, Mayo Clinic, Rochester, Minnesota 55905 (United States); Dalegrave, Charles [Clinical Cardiac Electrophysiology, Cardiology Division Hospital Sao Paulo, Federal University of Sao Paulo, 04024-002 Brazil (Brazil); Kolasa, Mark W. [David Grant Medical Center, Fairfield, California 94535 (United States)

    2014-02-15

    Purpose: In cardiac ablation therapy, accurate anatomic guidance is necessary to create effective tissue lesions for elimination of left atrial fibrillation. While fluoroscopy, ultrasound, and electroanatomic maps are important guidance tools, they lack information regarding detailed patient anatomy which can be obtained from high resolution imaging techniques. For this reason, there has been significant effort in incorporating detailed, patient-specific models generated from preoperative imaging datasets into the procedure. Both clinical and animal studies have investigated registration and targeting accuracy when using preoperative models; however, the effect of various error sources on registration accuracy has not been quantitatively evaluated. Methods: Data from phantom, canine, and patient studies are used to model and evaluate registration accuracy. In the phantom studies, data are collected using a magnetically tracked catheter on a static phantom model. Monte Carlo simulation studies were run to evaluate both baseline errors as well as the effect of different sources of error that would be present in a dynamicin vivo setting. Error is simulated by varying the variance parameters on the landmark fiducial, physical target, and surface point locations in the phantom simulation studies. In vivo validation studies were undertaken in six canines in which metal clips were placed in the left atrium to serve as ground truth points. A small clinical evaluation was completed in three patients. Landmark-based and combined landmark and surface-based registration algorithms were evaluated in all studies. In the phantom and canine studies, both target registration error and point-to-surface error are used to assess accuracy. In the patient studies, no ground truth is available and registration accuracy is quantified using point-to-surface error only. Results: The phantom simulation studies demonstrated that combined landmark and surface-based registration improved

  4. SilMush: A procedure for modeling of the geochemical evolution of silicic magmas and granitic rocks

    Science.gov (United States)

    Hertogen, Jan; Mareels, Joyce

    2016-07-01

    A boundary layer crystallization modeling program is presented that specifically addresses the chemical fractionation in silicic magma systems and the solidification of plutonic bodies. The model is a Langmuir (1989) type approach and does not invoke crystal settling in high-viscosity silicic melts. The primary aim is to model a granitic rock as a congealed crystal-liquid mush, and to integrate major element and trace element modeling. The procedure allows for some exploratory investigation of the exsolution of H2O-fluids and of the fluid/melt partitioning of trace elements. The procedure is implemented as a collection of subroutines for the MS Excel spreadsheet environment and is coded in the Visual Basic for Applications (VBA) language. To increase the flexibility of the modeling, the procedure is based on discrete numeric process simulation rather than on solution of continuous differential equations. The program is applied to a study of the geochemical variation within and among three granitic units (Senones, Natzwiller, Kagenfels) from the Variscan Northern Vosges Massif, France. The three units cover the compositional range from monzogranite, over syenogranite to alkali-feldspar granite. An extensive set of new major element and trace element data is presented. Special attention is paid to the essential role of accessory minerals in the fractionation of the Rare Earth Elements. The crystallization model is able to reproduce the essential major and trace element variation trends in the data sets of the three separate granitic plutons. The Kagenfels alkali-feldspar leucogranite couples very limited variation in major element composition to a considerable and complex variation of trace elements. The modeling results can serve as a guide for the reconstruction of the emplacement sequence of petrographically distinct units. Although the modeling procedure essentially deals with geochemical fractionation within a single pluton, the modeling results bring up a

  5. Pick-Up and Delivery Problem: Models and Single Vehicle Exact Procedures,

    Science.gov (United States)

    1985-06-01

    appropriate Lagrangian ascent procedures (for example, see Bazaraa and Goode 18)). IMI 22 U r! ,.~ 4. A BRANCH AND BOUND ALGORITHM FOR THE SINGLE VEHICLE...B&B phase. For this purpose a subgradient optimization procedure, suggested by Bazaraa and Goode for the TSP, was utilized to improve the * value of F...Analysed by a Routing Heuristic", Working Paper #81-006, University of Maryland (February). 8 Bazaraa , M. and J. Goode (1977). "The Travelling Salesman

  6. Towards an American Model of Criminal Process: The Reform of the Polish Code of Criminal Procedure

    Directory of Open Access Journals (Sweden)

    Roclawska Monika

    2014-06-01

    Full Text Available In September 2013, the Polish Parliament passed an amendment to the Code of Criminal Procedure. The legislators decided to expand a number of adversarial elements present in current Polish criminal proceedings. When these changes come into effect (July 1, 2015, Polish criminal procedure will be similar to American regulations, in which the judge’s role is to be an impartial arbitrator, not an investigator.

  7. A Comparison of Item Parameter Standard Error Estimation Procedures for Unidimensional and Multidimensional Item Response Theory Modeling

    Science.gov (United States)

    Paek, Insu; Cai, Li

    2014-01-01

    The present study was motivated by the recognition that standard errors (SEs) of item response theory (IRT) model parameters are often of immediate interest to practitioners and that there is currently a lack of comparative research on different SE (or error variance-covariance matrix) estimation procedures. The present study investigated item…

  8. A Comparison of Item Parameter Standard Error Estimation Procedures for Unidimensional and Multidimensional Item Response Theory Modeling

    Science.gov (United States)

    Paek, Insu; Cai, Li

    2014-01-01

    The present study was motivated by the recognition that standard errors (SEs) of item response theory (IRT) model parameters are often of immediate interest to practitioners and that there is currently a lack of comparative research on different SE (or error variance-covariance matrix) estimation procedures. The present study investigated item…

  9. Reliability assessment of a manual-based procedure towards learning curve modeling and fmea analysis

    Directory of Open Access Journals (Sweden)

    Gustavo Rech

    2013-03-01

    Full Text Available Separation procedures in drug Distribution Centers (DC are manual-based activities prone to failures such as shipping exchanged, expired or broken drugs to the customer. Two interventions seem as promising in improving the reliability in the separation procedure: (i selection and allocation of appropriate operators to the procedure, and (ii analysis of potential failure modes incurred by selected operators. This article integrates Learning Curves (LC and FMEA (Failure Mode and Effect Analysis aimed at reducing the occurrence of failures in the manual separation of a drug DC. LCs parameters enable generating an index to identify the recommended operators to perform the procedures. The FMEA is then applied to the separation procedure carried out by the selected operators in order to identify failure modes. It also deployed the traditional FMEA severity index into two sub-indexes related to financial issues and damage to company´s image in order to characterize failures severity. When applied to a drug DC, the proposed method significantly reduced the frequency and severity of failures in the separation procedure.

  10. Analysis of the interactions between host factor Sam68 and viral elements during foot-and-mouth disease virus infection

    Science.gov (United States)

    The nuclear protein Src-associated protein of 68 kDa in mitosis (Sam68) is known to bind RNA and be involved in cellular processes triggered in response to environmental stresses, including virus infection. Interestingly, Sam68, is a multi-functional protein implicated in the life cycle of retroviru...

  11. Organic chemistry on surfaces: Direct cyclopropanation by dihalocarbene addition to vinyl terminated self-assembled monolayers (SAMs

    Directory of Open Access Journals (Sweden)

    Malgorzata Adamkiewicz

    2014-12-01

    Full Text Available C11-Vinyl-terminated self-assembled monolayers (SAMs on silica surfaces are successfully modified in C–C bond forming reactions with dihalocarbenes to generate SAMs, terminated with dihalo- (fluoro, chloro, bromo cyclopropane motifs with about 30% surface coverage.

  12. Organic chemistry on surfaces: Direct cyclopropanation by dihalocarbene addition to vinyl terminated self-assembled monolayers (SAMs).

    Science.gov (United States)

    Adamkiewicz, Malgorzata; O'Hagan, David; Hähner, Georg

    2014-01-01

    C11-Vinyl-terminated self-assembled monolayers (SAMs) on silica surfaces are successfully modified in C-C bond forming reactions with dihalocarbenes to generate SAMs, terminated with dihalo- (fluoro, chloro, bromo) cyclopropane motifs with about 30% surface coverage.

  13. Organic chemistry on surfaces: Direct cyclopropanation by dihalocarbene addition to vinyl terminated self-assembled monolayers (SAMs)

    Science.gov (United States)

    Adamkiewicz, Malgorzata

    2014-01-01

    Summary C11-Vinyl-terminated self-assembled monolayers (SAMs) on silica surfaces are successfully modified in C–C bond forming reactions with dihalocarbenes to generate SAMs, terminated with dihalo- (fluoro, chloro, bromo) cyclopropane motifs with about 30% surface coverage. PMID:25550756

  14. Mesospheric effects of solar ultraviolet variations - Further analysis of SME IR ozone and Nimbus 7 SAMS temperature data

    Science.gov (United States)

    Hood, L. L.; Huang, Z.; Bougher, S. W.

    1991-01-01

    In order to improve the constraints on models of the mesospheric response to solar UV variations, an analysis is conducted of the Solar Mesosphere Explorer (SME) IR ozone data and Nimbus 7 stratosphere and mesosphere sounder (SAMS) temperature data. Maximum low-altitude ozone and temperature-response amplitudes occur at about the same altitude, where a strong coupling between photochemical and thermal components of the mesospheric response is suggested by the simultaneous positive temperature and negative ozone response maxima. Increased Lyman-alpha dissociation of water vapor and temperature feedback are theorized to account for the negative ozone response. HO(x) chemical heating can increase as ozone destruction increases, and can therefore account for the positive temperature response.

  15. Modeling the Morphometric Evolution of the Maize Shoot Apical Meristem.

    Science.gov (United States)

    Leiboff, Samuel; DeAllie, Christopher K; Scanlon, Michael J

    2016-01-01

    The maize (Zea mays subsp. mays L.) shoot apical meristem (SAM) is a self-replenishing pool of stem cells that produces all above-ground plant tissues. Improvements in image acquisition and processing techniques have allowed high-throughput, quantitative genetic analyses of SAM morphology. As with other large-scale phenotyping efforts, meaningful descriptions of genetic architecture depend on the collection of relevant measures. In this study, we tested two quantitative image processing methods to describe SAM morphology within the genus Zea, represented by 33 wild relatives of maize and 841 lines from a domesticated maize by wild teosinte progenitor (MxT) backcross population, along with previously reported data from several hundred diverse maize inbred lines. Approximating the MxT SAM as a paraboloid derived eight parabolic estimators of SAM morphology that identified highly overlapping quantitative trait loci (QTL) on eight chromosomes, which implicated previously identified SAM morphology candidate genes along with new QTL for SAM morphological variation. Using a Fourier-transform related method of comprehensive shape analysis, we detected cryptic SAM shape variation that identified QTL on six chromosomes. We found that Fourier transform shape descriptors and parabolic estimation measures are highly correlated and identified similar QTL. Analysis of shoot apex contours from 73 anciently diverged plant taxa further suggested that parabolic shape may be a universal feature of plant SAMs, regardless of evolutionary clade. Future high-throughput examinations of SAM morphology may benefit from the ease of acquisition and phenotypic fidelity of modeling the SAM as a paraboloid.

  16. Making the procedure manual come alive: A prototype relational database and dynamic website model for the management of nursing information.

    Science.gov (United States)

    Peace, Jane; Brennan, Patricia Flatley

    2006-01-01

    The nursing procedural manual is an essential resource for clinical practice, yet insuring its currency and availability at the point of care remains an unresolved information management challenge for nurses. While standard HTML-based web pages offer significant advantage over paper compilations, employing emerging computer science tools offers even greater promise. This paper reports on the creation of a prototypical dynamic web-based nursing procedure manual driven by a relational database. We created a relational database in MySQL to manage, store, and link the procedure information, and developed PHP files to guide content retrieval, content management, and display on demand in browser-viewable format. This database driven dynamic website model is an important innovation to meet the challenge of content management and dissemination of nursing information.

  17. Effect of Alkyl Chain Length on Carboxylic Acid SAMs on Ti-6Al-4V

    Directory of Open Access Journals (Sweden)

    Gavin A. Buckholtz

    2012-07-01

    Full Text Available The formation of methyl-terminated carboxylic acid self-assembled monolayers (SAMs with even numbers of carbons, from eighteen to thirty, was investigated on the oxide surface of Ti-6Al-4V and component metal oxides. Modified surfaces were characterized using diffuse reflectance infrared Fourier transform spectroscopy (DRIFT, matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS and contact angle analysis. Infrared spectroscopy indicated that using aerosol spray deposition techniques, stable, all-trans SAMs of octacosanoic (28 carbons and triacontanoic (30 carbons acids were formed on the alloy. Films were similarly formed on titanium and aluminum oxide. The surface of vanadium oxide exhibited limited reactivity. MALDI-TOF MS confirmed that formed films were monolayers, without multilayers or aggregates present. Water contact angles are indicative of the presence of hydrophobic methyl groups at the interface. This stable carboxylic acid SAM formation could be a useful alternative to phosphonic acid SAMs for corrosion and other applications.

  18. Molecular junctions based on SAMs of cruciform oligo(phenylene ethynylene)s

    DEFF Research Database (Denmark)

    Wei, Zhongming; Li, Tao; Jennum, Karsten Stein

    2012-01-01

    Cruciform oligo(phenylene ethynylene)s (OPEs) with an extended tetrathiafulvalene (TTF) donor moiety (OPE5-TTF and OPE3-TTF) and their simple analogues (OPE5-S and OPE3) without conjugated substituents were used to form high quality self-assembled monolayers (SAMs) on ultra-flat gold substrates...

  19. Constraints on the Mineralogy of Gale Crater Mudstones from MSL SAM Evolved Water

    Science.gov (United States)

    McAdam, A. C.; Sutter, B.; Franz, H. B.; Hogancamp, J. V. (Clark); Knudson, C. A.; Andrejkovicova, S.; Archer, P. D.; Eigenbrode, J. L.; Ming, D. W.; Mahaffy, P. R.

    2017-01-01

    The Sample Analysis at Mars (SAM) and Chemistry and Mineralogy (CheMin) instruments on the Mars Science Laboratory (MSL) have analysed more than 150 micron fines from 14 sites at Gale Crater. Here we focus on the mudstone samples. Two were drilled from sites John Klein (JK) and Cumberland (CB) in the Sheepbed mudstone. Six were drilled from Murray Formation mudstone: Confidence Hills (CH), Mojave (MJ), Telegraph Peak (TP), Buckskin (BK), Oudam (OU), Marimba (MB). SAM's evolved gas analysis mass spectrometry (EGA-MS) detected H2O, CO2, O2, H2, SO2, H2S, HCl, NO, and other trace gases, including organic fragments. The identity and evolution temperature of evolved gases can support CheMin mineral detection and place constraints on trace volatile-bearing phases or phases difficult to characterize with X-ray diffraction (e.g., amorphous phases). Here we will focus on SAM H2O data and comparisons to SAM-like analyses of key reference materials.

  20. Cross-Reactive Sensor Array for Metal Ion Sensing Based on Fluorescent SAMs

    Directory of Open Access Journals (Sweden)

    Mercedes Crego-Calama

    2007-09-01

    Full Text Available Fluorescent self assembled monolayers (SAMs on glass were previouslydeveloped in our group as new sensing materials for metal ions. These fluorescent SAMs arecomprised by fluorophores and small molecules sequentially deposited on a monolayer onglass. The preorganization provided by the surface avoids the need for complex receptordesign, allowing for a combinatorial approach to sensing systems based on small molecules.Now we show the fabrication of an effective microarray for the screening of metal ions andthe properties of the sensing SAMs. A collection of fluorescent sensing SAMs wasgenerated by combinatorial methods and immobilized on the glass surfaces of a custom-made 140 well microtiter-plate. The resulting libraries are easily measured and show variedresponses to a series cations such as Cu2+ , Co2+ , Pb2+ , Ca2+ and Zn2+ . These surfaces are notdesigned to complex selectively a unique analyte but rather they are intended to producefingerprint type responses to a range of analytes by less specific interactions. The unselectiveresponses of the library to the presence of different cations generate a characteristic patternfor each analyte, a “finger print” response.

  1. Cross-Reactive Sensor Array for Metal Ion Sensing Based on Fluorescent SAMs

    Science.gov (United States)

    Basabe-Desmonts, Lourdes; van der Baan, Frederieke; Zimmerman, Rebecca S.; Reinhoudt, David N.; Crego-Calama, Mercedes

    2007-01-01

    Fluorescent self assembled monolayers (SAMs) on glass were previously developed in our group as new sensing materials for metal ions. These fluorescent SAMs are comprised by fluorophores and small molecules sequentially deposited on a monolayer on glass. The preorganization provided by the surface avoids the need for complex receptor design, allowing for a combinatorial approach to sensing systems based on small molecules. Now we show the fabrication of an effective microarray for the screening of metal ions and the properties of the sensing SAMs. A collection of fluorescent sensing SAMs was generated by combinatorial methods and immobilized on the glass surfaces of a custom-made 140 well microtiter-plate. The resulting libraries are easily measured and show varied responses to a series cations such as Cu2+, Co2+, Pb2+, Ca2+ and Zn2+. These surfaces are not designed to complex selectively a unique analyte but rather they are intended to produce fingerprint type responses to a range of analytes by less specific interactions. The unselective responses of the library to the presence of different cations generate a characteristic pattern for each analyte, a “finger print” response.

  2. Initial SAM Calibration Gas Experiments on Mars: Quadrupole Mass Spectrometer Results and Implications

    Science.gov (United States)

    Franz, Heather B.; Trainer, Melissa G.; Malespin, Charles A.; Mahaffy, Paul R.; Atreya, Sushil K.; Becker, Richard H,; Benna, Mehdi; Conrad, Pamela G.; Eigenbrode, Jennifer L.; Freissinet, Caroline; hide

    2017-01-01

    The Sample Analysis at Mars (SAM) instrument suite of the Mars Science Laboratory (MSL) Curiosity rover is equipped to analyze both martian atmospheric gases and volatiles released by pyrolysis of solid surface materials, with target measurements including chemical and isotopic composition (Mahaffy et al., 2012). To facilitate assessment of instrument performance and validation of results obtained on Mars, SAM houses a calibration cell containing CO2, Ar, N2, Xe, and several fluorinated hydrocarbon compounds (Franz et al., 2014; Mahaffy et al., 2012). This report describes the first two experiments utilizing this calibration cell on Mars and gives results from analysis of data acquired with the SAM Quadrupole Mass Spectrometer (QMS). These data support the accuracy of isotope ratios obtained with the QMS (Conrad et al., 2016; Mahaffy et al., 2013) and provide ground-truth for reassessment of analytical constants required for atmospheric measurements, which were reported in previous contributions (Franz et al., 2015, 2014). The most significant implication of the QMS data involves reinterpretation of pre-launch contamination previously believed to affect only CO abundance measurements (Franz et al., 2015) to affect N2 abundances, as well. The corresponding adjustment to the N2 calibration constant presented here brings the atmospheric volume mixing ratios for Ar and N2 retrieved by SAM into closer agreement with those reported by the Viking mission (Owen et al., 1977; Oyama and Berdahl, 1977).

  3. Initial SAM calibration gas experiments on Mars: Quadrupole mass spectrometer results and implications

    Science.gov (United States)

    Franz, Heather B.; Trainer, Melissa G.; Malespin, Charles A.; Mahaffy, Paul R.; Atreya, Sushil K.; Becker, Richard H.; Benna, Mehdi; Conrad, Pamela G.; Eigenbrode, Jennifer L.; Freissinet, Caroline; Manning, Heidi L. K.; Prats, Benito D.; Raaen, Eric; Wong, Michael H.

    2017-04-01

    The Sample Analysis at Mars (SAM) instrument suite of the Mars Science Laboratory (MSL) Curiosity rover is equipped to analyze both martian atmospheric gases and volatiles released by pyrolysis of solid surface materials, with target measurements including chemical and isotopic composition (Mahaffy et al., 2012). To facilitate assessment of instrument performance and validation of results obtained on Mars, SAM houses a calibration cell containing CO2, Ar, N2, Xe, and several fluorinated hydrocarbon compounds (Franz et al., 2014; Mahaffy et al., 2012). This report describes the first two experiments utilizing this calibration cell on Mars and gives results from analysis of data acquired with the SAM Quadrupole Mass Spectrometer (QMS). These data support the accuracy of isotope ratios obtained with the QMS (Conrad et al., 2016; Mahaffy et al., 2013) and provide ground-truth for reassessment of analytical constants required for atmospheric measurements, which were reported in previous contributions (Franz et al., 2015, 2014). The most significant implication of the QMS data involves reinterpretation of pre-launch contamination previously believed to affect only CO abundance measurements (Franz et al., 2015) to affect N2 abundances, as well. The corresponding adjustment to the N2 calibration constant presented here brings the atmospheric volume mixing ratios for Ar and N2 retrieved by SAM into closer agreement with those reported by the Viking mission (Owen et al., 1977; Oyama and Berdahl, 1977).

  4. cljam: a library for handling DNA sequence alignment/map (SAM) with parallel processing.

    Science.gov (United States)

    Takeuchi, Toshiki; Yamada, Atsuo; Aoki, Takashi; Nishimura, Kunihiro

    2016-01-01

    Next-generation sequencing can determine DNA bases and the results of sequence alignments are generally stored in files in the Sequence Alignment/Map (SAM) format and the compressed binary version (BAM) of it. SAMtools is a typical tool for dealing with files in the SAM/BAM format. SAMtools has various functions, including detection of variants, visualization of alignments, indexing, extraction of parts of the data and loci, and conversion of file formats. It is written in C and can execute fast. However, SAMtools requires an additional implementation to be used in parallel with, for example, OpenMP (Open Multi-Processing) libraries. For the accumulation of next-generation sequencing data, a simple parallelization program, which can support cloud and PC cluster environments, is required. We have developed cljam using the Clojure programming language, which simplifies parallel programming, to handle SAM/BAM data. Cljam can run in a Java runtime environment (e.g., Windows, Linux, Mac OS X) with Clojure. Cljam can process and analyze SAM/BAM files in parallel and at high speed. The execution time with cljam is almost the same as with SAMtools. The cljam code is written in Clojure and has fewer lines than other similar tools.

  5. Statement of Facts for 1977 City-Wide Mock Trial Competitions. Walker Thomas v. Sam Nomad.

    Science.gov (United States)

    National Inst. for Citizen Education in the Law, Washington, DC.

    Prepared by the District of Columbia Street Law Project for its annual city-wide mock trial competition, this instructional handout provides material for a civil case over an automobile accident. Walker Thomas is suing Sam Nomad for damages that resulted from a collision, for which both parties blame the other. The handout clarifies the laws and…

  6. Predicting the Best Fit: A Comparison of Response Surface Models for Midazolam and Alfentanil Sedation in Procedures With Varying Stimulation.

    Science.gov (United States)

    Liou, Jing-Yang; Ting, Chien-Kun; Mandell, M Susan; Chang, Kuang-Yi; Teng, Wei-Nung; Huang, Yu-Yin; Tsou, Mei-Yung

    2016-08-01

    Selecting an effective dose of sedative drugs in combined upper and lower gastrointestinal endoscopy is complicated by varying degrees of pain stimulation. We tested the ability of 5 response surface models to predict depth of sedation after administration of midazolam and alfentanil in this complex model. The procedure was divided into 3 phases: esophagogastroduodenoscopy (EGD), colonoscopy, and the time interval between the 2 (intersession). The depth of sedation in 33 adult patients was monitored by Observer Assessment of Alertness/Scores. A total of 218 combinations of midazolam and alfentanil effect-site concentrations derived from pharmacokinetic models were used to test 5 response surface models in each of the 3 phases of endoscopy. Model fit was evaluated with objective function value, corrected Akaike Information Criterion (AICc), and Spearman ranked correlation. A model was arbitrarily defined as accurate if the predicted probability is fit. The reduced Greco model had the lowest objective function value and AICc and thus the best fit. This model was reliable with acceptable predictive ability based on adequate clinical correlation. We suggest that this model has practical clinical value for patients undergoing procedures with varying degrees of stimulation.

  7. A Suggested Stress Analysis Procedure For Nozzle To Head Shell Element Model – A Case Study

    Directory of Open Access Journals (Sweden)

    Sanket S. Chaudhari

    2012-08-01

    Full Text Available Stress analysis of pressure vessel has been always a serious and a critical analysis. The paper performs a standard procedure of pressure vessel analysis and validation based on previous papers. It also demonstrates the most critical part and how it affects entire structure. Relevant ASME (ASME, 2004, ASME Boiler and Pressure Vessel Code, Section VIII, Division 2, American Society of Mechanical Engineers, New York norms are produced to explain analysis procedure. WRC (Welding research council methodology is explained to validate finite element analysis work

  8. Due process model of procedural justice in performance appraisal: promotion versus termination scenarios.

    Science.gov (United States)

    Kataoka, Heloneida C; Cole, Nina D; Flint, Douglas A

    2006-12-01

    In a laboratory study, 318 student participants (148 male, 169 female, and one who did not report sex; M age 25.0, SD = 6.0) in introductory organizational behavior classes responded to scenarios in which performance appraisal resulted in either employee promotion or termination. Each scenario had varying levels of three procedural justice criteria for performance appraisal. For both promotion and termination outcomes, analysis showed that, as the number of criteria increased, perceptions of procedural fairness increased. A comparison between the two outcomes showed that perceptions of fairness were significantly stronger for the promotion outcome than for termination.

  9. Evidence for Smectite Clays from MSL SAM Analyses of Mudstone at Yellowknife Bay, Gale Crater, Mars

    Science.gov (United States)

    McAdam, Amy; Franz, Heather; Mahaffy, Paul R.; Eigenbrode, Jennifer L.; Stern, Jennifer C.; Brunner, Anna; Archer, Paul Douglas; Ming, Douglas W.; Morris, Richard V.; Atreya, Sushil K.

    2013-01-01

    Drilled samples of mudstone from the Sheepbed unit at Yellowknife Bay were analyzed by MSL instruments including the Sample Analysis at Mars (SAM) and Chemistry and Mineralogy (CheMin) instruments in MSL's Analytical Laboratory. CheMin analyses revealed the first in situ X-ray diffraction based evidence of clay minerals on Mars, which are likely trioctahedral smectites (e.g., saponite) and comprise approx 20% of the mudstone sample (e.g., Bristow et al., this meeting). SAM analyses, which heated the mudstone samples to 1000 C and monitored volatiles evolved to perform in situ evolved gas analysis mass spectrometry (EGA-MS), resulted in a H2O trace exhibiting a wide evolution at temperatures clay mineral. Comparison to EGA-MS data collected under SAM-like conditions on a variety of clay mineral reference materials indicate that a trioctahedral smectite, such as saponite, is most consistent with the high temperature H2O evolution observed. There may also be SAM EGA-MS evidence for a small high temperature H2O evolution from scoop samples from the Yellowknife Bay Rocknest sand shadow bedform. As in the mudstone samples, this evolution may indicate the detection of smectite clays, and the idea that minor clays may be present in Rocknest materials that could be expected to be at least partially derived from local sources is reasonable. But, because smectite clays were not definitively observed in CheMin analyses of Rocknest materials, they must be present at much lower abundances than the approx 20% observed in the mudstone samples. This potential detection underscores the complementary nature of the MSL CheMin and SAM instruments for investigations of martian sample mineralogy. Information on the nature of Yellowknife Bay clay minerals may also be available from the detection of H2 evolved during SAM EGA-MS at high temperature. A likely source of at least some of this H2 is H2O evolved from the smectite clays at high temperature, and it is possible these evolutions can

  10. Consensus Statement National Consensus Workshop on Management of SAM Children through Medical Nutrition Therapy.

    Science.gov (United States)

    Sachdev, H P S; Kapil, Umesh; Vir, Sheila

    2010-08-01

    Severe acute malnutrition (SAM) is an important preventable and treatable cause of morbidity and mortality in children below five years of age in India. The concerned stakeholders are not in agreement about the role of product based medical nutrition therapy in the management of this condition. In November 2009, a National Consensus Workshop was organized by the Department of Human Nutrition, All India Institute of Medical Sciences, New Delhi in collaboration with the Department of Pediatrics and Clinical Epidemiology, Sitaram Bhartia Institute of Science and Research, New Delhi, and the Sub-specialty Chapter on Nutrition, Indian Academy of Pediatrics. Presentations by eminent national and international scientists, the ensuing discussions, and opinions expressed by the participants provided the basic framework for drafting the consensus statement. The draft of the consensus statement was circulated to all the participants; it underwent two revisions after consideration of their comments. (i) Critically appraise the current global evidence on the utility of Medical Nutrition Therapy (MNT) for the management of SAM in under five children; (ii) Formulate a consensus amongst stakeholders regarding the need to introduce product based MNT for the management of SAM in under five children in India; (iii) Identify research priorities for MNT for the management of SAM in under five children in India; and (iv)Ascertain potential challenges for introducing product based MNT in India, if consensus opinion identifies such a need. Guidelines related to the role of MNT in management of children suffering from SAM are presented. Global and regional data document the effectiveness of MNT using ready-to-use therapeutic foods (RUTF) and locally formulated products. Adequate caution should be exercised to ensure that MNT for SAM does not interfere with measures for the holistic prevention of childhood undernutrition. Indian manufacture of RUTF is feasible, and can be scaled up. Product

  11. Analysis of chlorocarbon compounds identified in the SAM Investigation of the Mars Science Laboratory mission

    Science.gov (United States)

    Freissinet, Caroline; Mahaffy, P.; Glavin, D.; Buch, A.; Brunner, A.; Eigenbrode, J.; Martin, M.; Miller, K.; Steele, A.; Szopa, C.; SAM; MSL science Team

    2013-10-01

    The gas chromatograph mass spectrometer (GCMS) mode of the Sample Analysis at Mars (SAM) experiment was designed for the separation and identification of the chemical components of the gases released from a solid sample or trapped from the atmosphere. Gases from solid samples are either produced by heating a cell from ambient to >800-1100oC (EGA mode) or by wet chemistry extraction and reactions (not yet employed on Mars). Prior to EGA analysis of portions of the first 3 solid samples (Rocknest, John Klein and Cumberland) collected by MSL and delivered to SAM, an internal SAM blank run was carried out with an empty quartz cup. These blank analyses are required to understand the background signal intrinsic to the GCMS and its gas manifolds and traps. Several peaks have been identified as part of SAM background, some of them below the nmol level, which attests of the sensitivity of the instrument and as-designed performance of the GCMS. The origin of each peak has been investigated, and two major contributors are revealed; residual vapor from one of the chemicals used for SAM wet chemistry experiment: N-methyl-N-tert-butyldimethylsilyl-trifluoroacetamide (MTBSTFA), and the Tenax from the hydrocarbon trap. Supporting lab experiments are in progress to understand the reaction pathways of the molecules identified in the SAM background. These experiments help elucidate which molecules may be interpreted as indigenous to Mars. Of the three solid samples analyzed on 11 runs, it was possible to detect and identify several chlorinated compounds including several chlorohydrocarbons. The chlorine is likely derived from the decomposition of martian perchlorates or other indigenous Cl-containing species while the origin of the carbon is presently under investigation for each detected molecule. To date, a subset these molecules have been identified in lab studies and a terrestrial contribution to the observed products are more easily explained. The combined results from SAM and

  12. Iterative Procedures for Exact Maximum Likelihood Estimation in the First-Order Gaussian Moving Average Model

    Science.gov (United States)

    1990-11-01

    findings contained in this report are thosE Df the author(s) and should not he construed as an official Department Df the Army position, policy , or...Marquardt methods" to perform linear and nonlinear estimations. One idea in this area by Box and Jenkins (1976) was the " backcasting " procedure to evaluate

  13. Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria

    DEFF Research Database (Denmark)

    Karminska, K. H.; Purta, E.; Hansen, L .H.

    2010-01-01

    of a 4Fe-4S cluster, a SAM molecule coordinated to the iron-sulfur cluster (SAM1) and a SAM molecule that is the putative methyl group donor (SAM2). All mutations at predicted functional sites affect Cfr activity significantly as assayed by antibiotic susceptibility testing and primer extension analysis....... The investigation has identified essential amino acids and Cfr variants with altered reaction mechanisms and represents a first step towards understanding the structural basis of Cfr activity....

  14. Molecular cloning, characterization and expression analysis of the SAMS gene during adventitious root development in IBA-induced tetraploid black locust.

    Science.gov (United States)

    Quan, Jine; Zhang, Sheng; Zhang, Chunxia; Meng, Sen; Zhao, Zhong; Xu, Xuexuan

    2014-01-01

    S-Adenosylmethionine synthetase (SAMS) catalyzes the synthesis of S-adenosylmethionine (SAM), a precursor for ethylene and polyamine biosynthesis. Here, we report the isolation of the 1498 bp full-length cDNA sequence encoding tetraploid black locust (Robinia pseudoacacia L.) SAMS (TrbSAMS), which contains an open reading frame of 1179 bp encoding 392 amino acids. The amino acid sequence of TrbSAMS has more than 94% sequence identity to SAMSs from other plants, with a closer phylogenetic relationship to SAMSs from legumes than to SAMS from other plants. The TrbSAMS monomer consists of N-terminal, central, and C-terminal domains. Subcellular localization analysis revealed that the TrbSAMS protein localizes mainly to in the cell membrane and cytoplasm of onion epidermal cells and Arabidopsis mesophyll cell protoplasts. Indole-3-butyric acid (IBA)-treated cuttings showed higher levels of TrbSAMS transcript than untreated control cuttings during root primordium and adventitious root formation. TrbSAMS and its downstream genes showed differential expression in shoots, leaves, bark, and roots, with the highest expression observed in bark. IBA-treated cuttings also showed higher SAMS activity than control cuttings during root primordium and adventitious root formation. These results indicate that TrbSAMS might play an important role in the regulation of IBA-induced adventitious root development in tetraploid black locust cuttings.

  15. CONCEPTUAL MODEL AND PROCEDURES TO ASSIMILATE PRODUCTION TECHNOLOGIES OF BIOENERGETICS OF RESIDUAL BIOMASS

    Directory of Open Access Journals (Sweden)

    David Muto Lubota

    2016-07-01

    Full Text Available The present work expose the conceptual pattern for a process of assimilation of technologies with the purpose of creating obtaining capacities of bio energy with the objective of achieving an energy insurance of the recycle of Urban Solid Residuals (RSU in the municipality of Cabinda, Angola. The conceptual pattern is novel because it considers the south-south collaboration, and it is supported by a general procedure of assimilation of the technologies that includes in one of its steps a specify procedure for the step concerning the insurance of the chain supply that contains as additional aspect, in a novel way, the determination of the initial’s investors capacities assisting to the demand of final products as well as to the readiness of the raw materials, based in the problems of uncertainty to the future changes. Finally conclusions are elaborated with projections for the future work.

  16. A Procedure for Modeling Structural Component/Attachment Failure Using Transient Finite Element Analysis

    Science.gov (United States)

    Lovejoy, Andrew E.; Jegley, Dawn C. (Technical Monitor)

    2007-01-01

    Structures often comprise smaller substructures that are connected to each other or attached to the ground by a set of finite connections. Under static loading one or more of these connections may exceed allowable limits and be deemed to fail. Of particular interest is the structural response when a connection is severed (failed) while the structure is under static load. A transient failure analysis procedure was developed by which it is possible to examine the dynamic effects that result from introducing a discrete failure while a structure is under static load. The failure is introduced by replacing a connection load history by a time-dependent load set that removes the connection load at the time of failure. The subsequent transient response is examined to determine the importance of the dynamic effects by comparing the structural response with the appropriate allowables. Additionally, this procedure utilizes a standard finite element transient analysis that is readily available in most commercial software, permitting the study of dynamic failures without the need to purchase software specifically for this purpose. The procedure is developed and explained, demonstrated on a simple cantilever box example, and finally demonstrated on a real-world example, the American Airlines Flight 587 (AA587) vertical tail plane (VTP).

  17. Analogue Experiments Identify Possible Precursor Compounds for Chlorohydrocarbons Detected in SAM

    Science.gov (United States)

    Miller, K.; Summons, R. E.; Eigenbrode, J. L.; Freissinet, C.; Glavin, D. P.; Martin, M. G.; Team, M.

    2013-12-01

    Since landing at Gale Crater on August 6, 2012, the Sample Analysis at Mars (SAM) instrument suite, aboard the Curiosity Rover, has conducted multiple analyses of scooped and drilled samples and has identified a suite of chlorohydrocarbons including chloromethane, dichloromethane, trichloromethane, chloromethylpropene, and chlorobenzene (Glavin et al., 2013; Leshin et al., 2013). These compounds were identified after samples were pyrolysed at temperatures up to ~835°C through a combination of Evolved Gas Analysis (EGA) and Gas Chromatography Mass Spectrometry (GCMS). Since these chlorinated species were well above the background levels determined by empty cup blanks analyzed prior to solid sample analyses, thermal degradation of oxychlorine phases, such as perchlorate, present in the Martian soil, are the most likely source of chlorine needed to generate these chlorohydrocarbons. Laboratory analogue experiments show that terrestrial organics internal to SAM, such as N-methyl-N(tert-butyldimethylsilyl)trifluoroacetamide (MTBSTFA), a derivatization agent, can react with perchlorates to produce all of the chlorohydrocarbons detected by SAM. However, in pyrolysis-trap-GCMS laboratory experiments with MTBSTFA, C4 compounds are the predominant chlorohydrocarbon observed, whereas on SAM the C1 chlorohydrocarbons dominate (Glavin et al., 2013). This, in addition to the previous identification of chloromethane and dichloromethane by the 1976 Viking missions (Biemann et al., 1977), suggest that there could be another, possibly Martian, source of organic carbon contributing to the formation of the C1 chlorohydrocarbons, or other components of the solid samples analyzed by SAM are having a catalytic effect on chlorohydrocarbon generation. Laboratory analogue experiments investigated a suite of organic compounds that have the potential to accumulate on Mars (Benner et al., 2000) and thus serve as sources of carbon for the formation of chlorohydrocarbons detected by the SAM and

  18. Validation Tests of Open-Source Procedures for Digital Camera Calibration and 3d Image-Based Modelling

    Science.gov (United States)

    Toschi, I.; Rivola, R.; Bertacchini, E.; Castagnetti, C.; Dubbini, M.; Capra, A.

    2013-07-01

    Among the many open-source software solutions recently developed for the extraction of point clouds from a set of un-oriented images, the photogrammetric tools Apero and MicMac (IGN, Institut Géographique National) aim to distinguish themselves by focusing on the accuracy and the metric content of the final result. This paper firstly aims at assessing the accuracy of the simplified and automated calibration procedure offered by the IGN tools. Results obtained with this procedure were compared with those achieved with a test-range calibration approach using a pre-surveyed laboratory test-field. Both direct and a-posteriori validation tests turned out successfully showing the stability and the metric accuracy of the process, even when low textured or reflective surfaces are present in the 3D scene. Afterwards, the possibility of achieving accurate 3D models from the subsequently extracted dense point clouds is also evaluated. Three different types of sculptural elements were chosen as test-objects and "ground-truth" data were acquired with triangulation laser scanners. 3D models derived from point clouds oriented with a simplified relative procedure show a suitable metric accuracy: all comparisons delivered a standard deviation of millimeter-level. The use of Ground Control Points in the orientation phase did not improve significantly the accuracy of the final 3D model, when a small figure-like corbel was used as test-object.

  19. Using the PLUM procedure of SPSS to fit unequal variance and generalized signal detection models.

    Science.gov (United States)

    DeCarlo, Lawrence T

    2003-02-01

    The recent addition of aprocedure in SPSS for the analysis of ordinal regression models offers a simple means for researchers to fit the unequal variance normal signal detection model and other extended signal detection models. The present article shows how to implement the analysis and how to interpret the SPSS output. Examples of fitting the unequal variance normal model and other generalized signal detection models are given. The approach offers a convenient means for applying signal detection theory to a variety of research.

  20. Revision Arthroscopic Repair Versus Latarjet Procedure in Patients With Recurrent Instability After Initial Repair Attempt: A Cost-Effectiveness Model.

    Science.gov (United States)

    Makhni, Eric C; Lamba, Nayan; Swart, Eric; Steinhaus, Michael E; Ahmad, Christopher S; Romeo, Anthony A; Verma, Nikhil N

    2016-09-01

    To compare the cost-effectiveness of arthroscopic revision instability repair and Latarjet procedure in treating patients with recurrent instability after initial arthroscopic instability repair. An expected-value decision analysis of revision arthroscopic instability repair compared with Latarjet procedure for recurrent instability followed by failed repair attempt was modeled. Inputs regarding procedure cost, clinical outcomes, and health utilities were derived from the literature. Compared with revision arthroscopic repair, Latarjet was less expensive ($13,672 v $15,287) with improved clinical outcomes (43.78 v 36.76 quality-adjusted life-years). Both arthroscopic repair and Latarjet were cost-effective compared with nonoperative treatment (incremental cost-effectiveness ratios of 3,082 and 1,141, respectively). Results from sensitivity analyses indicate that under scenarios of high rates of stability postoperatively, along with improved clinical outcome scores, revision arthroscopic repair becomes increasingly cost-effective. Latarjet procedure for failed instability repair is a cost-effective treatment option, with lower costs and improved clinical outcomes compared with revision arthroscopic instability repair. However, surgeons must still incorporate clinical judgment into treatment algorithm formation. Level IV, expected value decision analysis. Copyright © 2016. Published by Elsevier Inc.

  1. Early Evolved Gas Results from the Curiosity Rover’s SAM Investigation at Gale Crater

    Science.gov (United States)

    Mahaffy, Paul R.; Franz, H.; McAdam, A.; Brunner, A.; Eigenbrode, J.; Stern, J.; SAM Science Team; MSL Science Team

    2013-10-01

    The Mars Science Laboratory Mission is designed to explore the habitability of the selected landing site at Gale crater. The Sample Analysis at Mars (SAM) instrument suite contributes to this study with a search for organic compounds, an analysis of the composition of inorganic volatiles, and measurements of the isotopic composition light elements. Both atmospheric and solid samples are analyzed. The layers in the central mound (Mt. Sharp) of Gale crater are important targets for the MSL mission. However, in situ measurements made during the past year of interesting regions close to the Bradbury landing site have revealed a diverse geology and several primary mission objectives have already been realized. SAM is located in the interior of the Curiosity rover. The MSL cameras, a laser induced breakdown spectrometer, and elemental analysis instrumentation serves to locate sampling sites and interogate candidate materials before solid sample is collected either with a drill or a scoop for delivery to SAM and the XRD instrument CheMin. SAM integrates a quadrupole mass spectrometer (QMS), a tunable laser spectrometer (TLS), and a 6-column gas chromatograph (GC) with a solid sample transport system and a gas processing and enrichment system. Results of SAM atmospheric composition analyses have already been reported (1,2). To date, multiple SAM evolved gas experiments have examined samples from fines scooped from an aeolian drift and from two drilled samples of a mudstone. Major evolved gases are H2O, CO2, O2, SO2, H2S, H2, and a number of minor species. These data help confirm the likely presence of perchlorates, the presence of phylosillicates, and both reduced and oxidized compounds evolved from the same sample. 1) P.R. Mahaffy et al., Abundance and Isotopic Composition of Gases in the Martian Atmosphere from the Curiosity Rover, Science 343, (2013). 2) C.R. Webster et al., Isotope Ratios of H, C and O in Martian Atmospheric Carbon Dioxide and Water Measured by the

  2. Measuring the Effects of Customs and Administrative Procedures on Trade: Gravity Model for South-Eastern Europe

    Directory of Open Access Journals (Sweden)

    Katerina Toševska-Trpčevska

    2014-04-01

    Full Text Available This paper measures the effects of certain customs and administrative procedures on trade between the countries of South-Eastern Europe in the period 2008-2012. Following OECD methodology, we employ the augmented gravity model. The empirical results suggest that the number of days spent at the border and costs paid in both importer and exporter countries had significant negative influence on the volume of trade in the period 2008-2012. In addition, the model underlines that sharing the same border and being part of the former Yugoslav market are important determinants of trade in the region.

  3. Procedure to Determine Thermal Characteristics and Groundwater Influence in Heterogeneous Subsoil by an Enhanced Thermal Response Test and Numerical Modeling

    Science.gov (United States)

    Aranzabal, Nordin; Martos, Julio; Montero, Álvaro; Monreal, Llúcia; Soret, Jesús; Torres, José; García-Olcina, Raimundo

    2016-04-01

    Ground thermal conductivity and borehole thermal resistance are indispensable parameters for the optimal design of subsoil thermal processes and energy storage characterization. The standard method to determine these parameters is the Thermal Response Test (TRT) which results are evaluated by models considering the ground being homogeneous and isotropic. This method obtains an effective ground thermal conductivity which represents an average of the thermal conductivity along the different layers crossed by perforation. In order to obtain a ground thermal conductivity profile as a function of depth two additional key factors are required, first, a new significant data set: a temperature profile along the borehole; and second, a new analysis procedure to extract ground heterogeneity from the recorded data. This research work presents the results of an analysis procedure, complementing the standard TRT analysis, which allows to estimate the thermal conductivity profile from a temperature profile measured along the borehole during a TRT. In the analysis procedure, a 3D Finite Element Model (FEM) is used to fit simulation results with experimental data, by a set of iterative simulations. This methodology is applied to a data set obtained throughout a TRT of 1kW heat power injection in a 30m depth Borehole Heat Exchange (BHE) facility. A highly conductive layer have been detected and located at 25 m depth. In addition, a novel automated device to obtain temperature profiles along geothermal pipes with or without fluid flow is presented. This sensor system is intended to improve the standard TRT and it allows the collection of depth depending thermal characteristics of the subsoil geological structure. Currently, some studies are being conducted in double U-pipe borehole installations in order to improve previously introduced analysis procedure. From a numerical model simulation that takes into account advective effects is pretended to estimate underground water velocity

  4. A modular approach for the construction and modification of glyco-SAMs utilizing 1,3-dipolar cycloaddition.

    Science.gov (United States)

    Kleinert, Mike; Winkler, Tobias; Terfort, Andreas; Lindhorst, Thisbe K

    2008-06-21

    We report the synthesis of a broad variety of functionalized molecules for assembly on gold, allowing the formation of biologically relevant SAMs by a modular approach: either utilizing 1,3-dipolar cycloaddition of alkynes and azides in solution or by 'click on SAM'. Extensive studies into the various parameters of SAM formation and stability have been carried out, leading us to deduce reliable conditions under which glyco-decorated self-assembled monolayers can be formed and studied such as in SPR-supported binding assays.

  5. Curiosity's Sample Analysis at Mars (SAM) Investigation: Overview of Results from the First 120 Sols on Mars

    Science.gov (United States)

    Mahaffy, P. R.; Cabane, M.; Webster, C. R.; Archer, P. D.; Atreya, S. K.; Benna, M.; Brinckerhoff, W. B.; Brunner, A. E.; Buch, A.; Coll, P.; hide

    2013-01-01

    During the first 120 sols of Curiosity s landed mission on Mars (8/6/2012 to 12/7/2012) SAM sampled the atmosphere 9 times and an eolian bedform named Rocknest 4 times. The atmospheric experiments utilized SAM s quadrupole mass spectrometer (QMS) and tunable laser spectrometer (TLS) while the solid sample experiments also utilized the gas chromatograph (GC). Although a number of core experiments were pre-programmed and stored in EEProm, a high level SAM scripting language enabled the team to optimize experiments based on prior runs.

  6. Standardized added metabolic activity (SAM) IN {sup 18}F-FDG PET assessment of treatment response in colorectal liver metastases

    Energy Technology Data Exchange (ETDEWEB)

    Mertens, Jeroen; Goethals, I.; Wiele, C.V. de [Ghent University Hospital, Department of Nuclear Medicine, Ghent (Belgium); Bruyne, S. de [Ghent University Hospital, Department of Respiratory Medicine, Ghent (Belgium); Damme, N. van; Ceelen, W. [Ghent University Hospital, Department of Surgery, Ghent (Belgium); Smeets, P. [Ghent University Hospital, Department of Radiology, Ghent (Belgium); Troisi, R. [Ghent University Hospital, Department of General and Hepato-Biliary Surgery, Liver Transplantation Service, Ghent (Belgium); Laurent, S.; Geboes, K. [Ghent University Hospital, Department of Gastroenterology, Ghent (Belgium); Peeters, M. [Ghent University Hospital, Department of Gastroenterology, Ghent (Belgium); Antwerp University Hospital, Department of Oncology, Edegem (Belgium)

    2013-08-15

    Standardized added metabolic activity (SAM) is a PET parameter for assessing the total metabolic load of malignant processes, avoiding partial volume effects and lesion segmentation. The potential role of this parameter in the assessment of response to chemotherapy and bevacizumab was tested in patients with metastatic colorectal cancer with potentially resectable liver metastases (mCRC). {sup 18}F-FDG PET/CT was performed in 18 mCRC patients with liver metastases before treatment and after five cycles of FOLFOX/FOLFIRI and bevacizumab. Of the 18 patients, 16 subsequently underwent resection of liver metastases. Baseline and follow-up SUV{sub max}, and SAM as well as reduction in SUV{sub max} ({nabla}SUV{sub max}) and SAM ({nabla}SAM) of all liver metastases were correlated with morphological response, and progression-free and overall survival (PFS and OS). A significant reduction in metabolic activity of the liver metastases was seen after chemotherapy with a median {nabla}SUV{sub max} of 25.3 % and {nabla}SAM of 94.5 % (p = 0.033 and 0.003). Median baseline SUV{sub max} and SAM values were significantly different between morphological responders and nonresponders (3.8 vs. 7.2, p = 0.021; and 34 vs. 211, p = 0.002, respectively), but neither baseline PET parameters nor morphological response was correlated with PFS or OS. Follow-up SUV{sub max} and SAM as well as {nabla}SAM were found to be prognostic factors. The median PFS and OS in the patient group with a high follow-up SUV{sub max} were 10.4 months and 32 months, compared to a median PFS of 14.7 months and a median OS which had not been reached in the group with a low follow-up SUV{sub max} (p = 0.01 and 0.003, respectively). The patient group with a high follow-up SAM and a low {nabla}SAM had a median PFS and OS of 9.4 months and 32 months, whereas the other group had a median PFS of 14.7 months and a median OS which had not been reached (p = 0.002 for both PFS and OS). {sup 18}F-FDG PET imaging is a useful

  7. Automated one-loop calculations with GoSam

    Energy Technology Data Exchange (ETDEWEB)

    Cullen, G. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany); Greiner, N.; Heinrich, G.; Reiter, T. [Max-Planck-Institut fuer Physik, Muenchen (Germany); Luisoni, G. [Durham Univ. (United Kingdom). Inst. for Particle Physics Phenomenology; Mastrolia, P. [Max-Planck-Institut fuer Physik, Muenchen (Germany); Padua Univ. (Italy). Dipt. di Fisica; Ossola, G. [City Univ. of New York, NY (United States). New York City College of Technology; Tramontano, F. [CERN, Geneva (Switzerland). AS Div.

    2012-01-15

    In this talk, the program package GOSAM is presented which can be used for the automated calculation of one-loop amplitudes for multi-particle processes. The integrands are generated in terms of Feynman diagrams and can be reduced by d-dimensional integrand-level decomposition, or tensor reduction, or a combination of both. Through various examples we show that GOSAM can produce one-loop amplitudes for both QCD and electroweak theory; model files for theories Beyond the Standard Model can be linked as well. (orig.)

  8. Rocket injector anomalies study. Volume 1: Description of the mathematical model and solution procedure

    Science.gov (United States)

    Przekwas, A. J.; Singhal, A. K.; Tam, L. T.

    1984-01-01

    The capability of simulating three dimensional two phase reactive flows with combustion in the liquid fuelled rocket engines is demonstrated. This was accomplished by modifying an existing three dimensional computer program (REFLAN3D) with Eulerian Lagrangian approach to simulate two phase spray flow, evaporation and combustion. The modified code is referred as REFLAN3D-SPRAY. The mathematical formulation of the fluid flow, heat transfer, combustion and two phase flow interaction of the numerical solution procedure, boundary conditions and their treatment are described.

  9. Revisiting the destination ranking procedure in development of an Intervening Opportunities Model for public transit trip distribution

    Science.gov (United States)

    Nazem, Mohsen; Trépanier, Martin; Morency, Catherine

    2015-01-01

    An Enhanced Intervening Opportunities Model (EIOM) is developed for Public Transit (PT). This is a distribution supply dependent model, with single constraints on trip production for work trips during morning peak hours (6:00 a.m.-9:00 a.m.) within the Island of Montreal, Canada. Different data sets, including the 2008 Origin-Destination (OD) survey of the Greater Montreal Area, the 2006 Census of Canada, GTFS network data, along with the geographical data of the study area, are used. EIOM is a nonlinear model composed of socio-demographics, PT supply data and work location attributes. An enhanced destination ranking procedure is used to calculate the number of spatially cumulative opportunities, the basic variable of EIOM. For comparison, a Basic Intervening Opportunities Model (BIOM) is developed by using the basic destination ranking procedure. The main difference between EIOM and BIOM is in the destination ranking procedure: EIOM considers the maximization of a utility function composed of PT Level Of Service and number of opportunities at the destination, along with the OD trip duration, whereas BIOM is based on a destination ranking derived only from OD trip durations. Analysis confirmed that EIOM is more accurate than BIOM. This study presents a new tool for PT analysts, planners and policy makers to study the potential changes in PT trip patterns due to changes in socio-demographic characteristics, PT supply, and other factors. Also it opens new opportunities for the development of more accurate PT demand models with new emergent data such as smart card validations.

  10. Evolved Gas Analyses of Sedimentary Materials in Gale Crater, Mars: Results of the Curiosity Rover's Sample Analysis at Mars (SAM) Instrument from Yellowknife Bay to the Stimson Formation

    Science.gov (United States)

    Sutter, B.; McAdam, A. C.; Rampe, E. B.; Ming, D. W.; Mahaffy, P. R.; Navarro-Gonzalez, R.; Stern, J. C.; Eigenbrode, J. L.; Archer, P. D.

    2016-01-01

    The Sample Analysis at Mars (SAM) instrument aboard the Mars Science Laboratory rover has analyzed 10 samples from Gale Crater. All SAM evolved gas analyses have yielded a multitude of volatiles (e.g, H2O, SO2, H2S, CO2, CO, NO, O2, HC1). The objectives of this work are to 1) Characterize the evolved H2O, SO2, CO2, and O2 gas traces of sediments analyzed by SAM through sol 1178, 2) Constrain sediment mineralogy/composition based on SAM evolved gas analysis (SAM-EGA), and 3) Discuss the implications of these results releative to understanding the geochemical history of Gale Crater.

  11. Automatic procedure for realistic 3D finite element modelling of human brain for bioelectromagnetic computations

    Energy Technology Data Exchange (ETDEWEB)

    Aristovich, K Y; Khan, S H, E-mail: kirill.aristovich.1@city.ac.u [School of Engineering and Mathematical Sciences, City University London, Northampton Square, London EC1V 0HB (United Kingdom)

    2010-07-01

    Realistic computer modelling of biological objects requires building of very accurate and realistic computer models based on geometric and material data, type, and accuracy of numerical analyses. This paper presents some of the automatic tools and algorithms that were used to build accurate and realistic 3D finite element (FE) model of whole-brain. These models were used to solve the forward problem in magnetic field tomography (MFT) based on Magnetoencephalography (MEG). The forward problem involves modelling and computation of magnetic fields produced by human brain during cognitive processing. The geometric parameters of the model were obtained from accurate Magnetic Resonance Imaging (MRI) data and the material properties - from those obtained from Diffusion Tensor MRI (DTMRI). The 3D FE models of the brain built using this approach has been shown to be very accurate in terms of both geometric and material properties. The model is stored on the computer in Computer-Aided Parametrical Design (CAD) format. This allows the model to be used in a wide a range of methods of analysis, such as finite element method (FEM), Boundary Element Method (BEM), Monte-Carlo Simulations, etc. The generic model building approach presented here could be used for accurate and realistic modelling of human brain and many other biological objects.

  12. Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model.

    Science.gov (United States)

    Ghosh, Arup Kumar; Hussain, Faraz; Jha, Susmit; Langmead, Christopher J; Jha, Sumit Kumar

    2014-01-01

    Stochastic Differential Equation (SDE) models are used to describe the dynamics of complex systems with inherent randomness. The primary purpose of these models is to study rare but interesting or important behaviours, such as the formation of a tumour. Stochastic simulations are the most common means for estimating (or bounding) the probability of rare behaviours, but the cost of simulations increases with the rarity of events. To address this problem, we introduce a new algorithm specifically designed to quantify the likelihood of rare behaviours in SDE models. Our approach relies on temporal logics for specifying rare behaviours of interest, and on the ability of bit-vector decision procedures to reason exhaustively about fixed-precision arithmetic. We apply our algorithm to a minimal parameterised model of the cell cycle, and take Brownian noise into account while investigating the likelihood of irregularities in cell size and time between cell divisions.

  13. Updated Lagrangian finite element formulations of various biological soft tissue non-linear material models: a comprehensive procedure and review.

    Science.gov (United States)

    Townsend, Molly T; Sarigul-Klijn, Nesrin

    2016-01-01

    Simplified material models are commonly used in computational simulation of biological soft tissue as an approximation of the complicated material response and to minimize computational resources. However, the simulation of complex loadings, such as long-duration tissue swelling, necessitates complex models that are not easy to formulate. This paper strives to offer the updated Lagrangian formulation comprehensive procedure of various non-linear material models for the application of finite element analysis of biological soft tissues including a definition of the Cauchy stress and the spatial tangential stiffness. The relationships between water content, osmotic pressure, ionic concentration and the pore pressure stress of the tissue are discussed with the merits of these models and their applications.

  14. Wide Range Vacuum Pumps for the SAM Instrument on the MSL Curiosity Rover

    Science.gov (United States)

    Sorensen, Paul; Kline-Schoder, Robert; Farley, Rodger

    2014-01-01

    Creare Incorporated and NASA Goddard Space Flight Center developed and space qualified two wide range pumps (WRPs) that were included in the Sample Analysis at Mars (SAM) instrument. This instrument was subsequently integrated into the Mars Science Laboratory (MSL) "Curiosity Rover," launched aboard an Atlas V rocket in 2011, and landed on August 6, 2012, in the Gale Crater on Mars. The pumps have now operated for more than 18 months in the Gale Crater and have been evacuating the key components of the SAM instrument: a quadrupole mass spectrometer, a tunable laser spectrometer, and six gas chromatograph columns. In this paper, we describe the main design challenges and the ways in which they were solved. This includes the custom design of a miniaturized, high-speed motor to drive the turbo drag pump rotor, analysis of rotor dynamics for super critical operation, and bearing/lubricant design/selection.

  15. Validation of aerosol measurements by the satellite sensors SAM II and Sage

    Science.gov (United States)

    Russell, P. B.; Mccormick, M. P.; Swissler, T. J.

    1982-01-01

    A global data base on stratospheric aerosols has been obtained with the aid of the sensors SAM II and SAGE since the satellites carrying the sensors were launched in October 1978 and Feburary 1979, respectively. Several major comparative experiments have been conducted to acquire correlative data for validating the extinction profiles measured by these satellite sensors. The present investigation has the objective to present results from the first two of these experiments, which were conducted at Sondrestorm, Greenland, in November 1978, and at Poker Flat, Alaska, in July 1979. In both experiments, extinction profiles derived from the correlative sensors (dustsonde, lidar, filter, wire impactor) agreed, to within their respective uncertainties, with the extinction profiles measured by SAM II and SAGE (which in turn agreed with each other).

  16. Growth curve analysis of birds: the Richards model and procedural problems. [Tachycineta bicolor

    Energy Technology Data Exchange (ETDEWEB)

    Zach, R.; Liner, Y.; Rigby, G.L.; Mayoh, K.R.

    1984-01-01

    Four sigmoid growth curve models for birds were compared using the daily body masses and primary-feather lengths of 35 nestling tree swallows (Tachycineta bicolor). The Richards model was superior to the von Bertalanffy, Gompertz, and logistic models for body mass, but not for primary-feather length. The latter models have fixed growth forms and are special cases of the flexible Richards model. Owing to parameter correlations, the Richards model was very sensitive to the starting parameter values for the numerical computer fitting routines. The lack of data leading up to the asymptote made it difficult to calculate good starting values for primary-feather length. None of the models tested was completely satisfactory for primary-feather length, as indicated by nonrandomly distributed residuals over time. The log transformation was appropriate for body mass. It homogenized the residual variances and increased the explained percentage of variation. The explained percentage of variation was a useful selection criterion for the best-fitting model, especially since it was directly related to randomness in the distribution of the residuals and homogeneity of residual variances. However, even percentages of variation exceeding 99.5%, did not necessarily indicate an excellent fit. The Richards model did not yield more model parameters for growth curve analysis, because the shape parameter and the growth rate constant were almost perfectly correlated.

  17. Should India Use Commercially Produced Ready To Use Therapeutic Foods (RUTF For Severe Acute Malnutrition (SAM ?

    Directory of Open Access Journals (Sweden)

    radha holla

    2009-02-01

    Full Text Available Globally, nearly 20 million children under five suffer from Severe Acute Malnutrition (SAM, a condition which contributes to one million child deaths annually. In India 48% of children under five years of age are stunted and 43 percent are underweight; almost 8 million suffer from SAM. Malnutrition is not a new problem in India, nor is SAM. Several hospitals and non-government organizations are engaged in community-based management of malnutrition using locally produced/procured and locally processed foods along with intensive nutrition education. These programs enable parents to meet the nutritional requirements of their children with foods that are available at low cost. The Supreme Court of India has also directed the government to universalize the Integrated Child Development Scheme and provide one hot cooked meal to children under six years of age to supplement their nutrition. The blame for the increasing number of severely malnourish children can be laid at the door of policies that have destroyed poor people’s access to food. Nonetheless, there is urgent need to ensure that these children do not die; that they recover and maintain a healthy nutritional status. The current thinking – that a centrally produced and processed Ready-to-Use Therapeutic Food (RUTF should supplant the locally prepared indigenous foods in treatment of SAM – ignores the multiple causes of malnutrition and destroys the diversity of potential solutions based on locally available foods. This position paper has been drafted by Dr. Vandana Prasad, Radha Holla and Dr. Arun Gupta, members of the Working Group for Children Under Six – a joint effort of Jan Swasthya Abhiyan (People’s Health Movement – India and the Right to Food Campaign which been advocating for the last three years with the Indian government for decentralized and community-based strategies to combat and prevent malnutrition in children.

  18. Accuracy of axial depth of cut in micromilling operations - Simplified procedure and uncertainty model

    DEFF Research Database (Denmark)

    Bissacco, Giuliano

    2005-01-01

    and their rapid warming and cooling, which prevent the achievement of a steady state. Several other factors, independent on the tool-workpiece interaction, influence the machining accuracy. The cutting parameter most heavily affected is the axial depth of cut which is the most critical when using micro end mills......, due to the easy breakage particularly when milling on hard materials [1]. Typical values for the errors on the control of the axial depth of cut are in the order of 50 microns, while the aimed depth of cut can be as low as 5 microns. The author has developed a machining procedure for optimal control......In order to maintain an optimum cutting speed, the reduction of mill diameters requires machine tools with high rotational speed capabilities. A solution to update existing machine tools is the use of high speed attached spindles. Major drawbacks of these attachments are the high thermal expansion...

  19. Mitofilin and CHCHD6 physically interact with Sam50 to sustain cristae structure.

    Science.gov (United States)

    Ding, Chengli; Wu, Zhifei; Huang, Lei; Wang, Yajie; Xue, Jie; Chen, Si; Deng, Zixin; Wang, Lianrong; Song, Zhiyin; Chen, Shi

    2015-11-04

    The inner mitochondrial membrane (IMM) invaginates to form cristae and the maintenance of cristae depends on the mitochondrial contact site (MICOS) complex. Mitofilin and CHCHD6, which physically interact, are two components of the MICOS. In this study, we performed immunoprecipitation experiments with Mitofilin and CHCHD6 antibodies and identified a complex containing Mitofilin, Sam50, and CHCHD 3 and 6. Using transcription activator-like effector nucleases (TALENs), we generated knockdown/knockout clones of Mitofilin and CHCHD6. Transmission electron microscopy (TEM) revealed that vesicle-like cristae morphology appeared in cell lines lacking Mitofilin, and mitochondria exhibited lower cristae density in CHCHD6-knockout cells. Immunoblot analysis showed that knockdown of Mitofilin, but not knockout of CHCHD6, affected their binding partners that control cristae morphology. We also demonstrated that Mitofilin and CHCHD6 directly interacted with Sam50. Additionally, we observed that Mitofilin-knockdown cells showed decreased mitochondrial membrane potential (ΔΨm) and intracellular ATP content, which were minimally affected in CHCHD6-knockout cells. Taken together, we conclude that the integrity of MICOS and its efficient interaction with Sam50 are indispensable for cristae organization, which is relevant to mitochondrial function.

  20. Selective in situ potential-assisted SAM formation on multi electrode arrays

    Science.gov (United States)

    Haag, Ann-Lauriene; Toader, Violeta; Lennox, R. Bruce; Grutter, Peter

    2016-11-01

    The selective modification of individual components in a biosensor array is challenging. To address this challenge, we present a generalizable approach to selectively modify and characterize individual gold surfaces in an array, in an in situ manner. This is achieved by taking advantage of the potential dependent adsorption/desorption of surface-modified organic molecules. Control of the applied potential of the individual sensors in an array where each acts as a working electrode provides differential derivatization of the sensor surfaces. To demonstrate this concept, two different self-assembled monolayer (SAM)-forming electrochemically addressable ω-ferrocenyl alkanethiols (C11) are chemisorbed onto independent but spatially adjacent gold electrodes. The ferrocene alkanethiol does not chemisorb onto the surface when the applied potential is cathodic relative to the adsorption potential and the electrode remains underivatized. However, applying potentials that are modestly positive relative to the adsorption potential leads to extensive coverage within 10 min. The resulting SAM remains in a stable state while held at potentials <200 mV above the adsorption potential. In this state, the chemisorbed SAM does not significantly desorb nor do new ferrocenylalkythiols adsorb. Using three set applied potentials provides for controlled submonolayer alkylthiol marker coverage of each independent gold electrode. These three applied potentials are dependent upon the specifics of the respective adsorbate. Characterization of the ferrocene-modified electrodes via cyclic voltammetry demonstrates that each specific ferrocene marker is exclusively adsorbed to the desired target electrode.

  1. Major Volatiles from MSL SAM Evolved Gas Analyses: Yellowknife Bay Through Lower Mount Sharp

    Science.gov (United States)

    McAdam, A. C.; Archer, P. D., Jr.; Sutter, B.; Franz, H. B.; Eigenbrode, J. L.; Ming, D. W.; Morris, R. V.; Niles, P. B.; Stern, J. C.; Freissinet, C.; hide

    2015-01-01

    The Sample Analysis at Mars (SAM) and Chemistry and Mineralogy (CheMin) instruments on the Mars Science Laboratory (MSL) analysed several subsamples of Klein ("JK") and Cumberland ("CB"). One was drilled from the Windjana ("WJ") site on a sandstone of the Kimberly formation investigated on route to Mount Sharp. Another was drilled from the Confidence Hills ("CH") site on a sandstone of the Murray Formation at the base of Mt. Sharp (Pahrump Hills). Outcrops are sedimentary rocks that are largely of fluvial or lacustrine origin, with minor aeolian deposits.. SAM's evolved gas analysis (EGA) mass spectrometry detected H2O, CO2, O2, H2, SO2, H2S, HCl, NO, and other trace gases, including organic fragments. The identity and evolution temperature (T) of evolved gases can support CheMin mineral detection and place constraints on trace volatile-bearing phases or phases difficult to characterize with XRD (e.g., X-ray amorphous phases). They can also give constraints on sample organic chemistry. Here, we discuss trends in major evolved volatiles from SAM EGA analyses to date.

  2. Microtribological and electrochemical corrosion behaviors of polydopamine coating on APTS-SAM modified Si substrate

    Energy Technology Data Exchange (ETDEWEB)

    Ou Junfei [State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); Graduate University of Chinese Academy of Sciences, Beijing 100080 (China); Wang Jinqing, E-mail: jqwang@lzb.ac.cn [State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); Liu Sheng [State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); Graduate University of Chinese Academy of Sciences, Beijing 100080 (China); Zhou Jinfang [State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); Ren Sili, E-mail: slren@lzb.ac.cn [State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000 (China); Yang Shengrong [State Key Laboratory of Solid Lubrication, Lanzhou Institute of Chemical Physics, Chinese Academy of Sciences, Lanzhou 730000 (China)

    2009-11-15

    A polydopamine coating (coded as PDAc) was prepared successfully on a Si substrate through a two-step process. Briefly, to improve the adhesion of PDAc on the Si substrate, a self-assembled monolayer of 3-aminopropyl triethoxysilane (coded as APTS-SAM) was firstly generated on the bare Si wafer. Thereafter, the PDAc with different thickness was fabricated through the chemical adsorption and autopolymerization of the dopamine hydrochloride on the APTS-SAM coated Si substrate. The formation of PDAc on the APTS-SAM modified Si substrate was proved by the characterizations of contact angle measurement, attenuated total reflectance Fourier transform infrared (ATR-FTIR) analysis, and X-ray photoelectron spectroscope (XPS), etc. The ellipsometric thickness measurement and atomic force microscopy (AFM) image analysis showed that the PDAc became thicker and rougher with the deposition time prolongation. Microtribological study showed that the thickness and roughness of the PDAc played a significant role in the tribological properties. In comparison with the bare Si substrate, the PDAc with thinner thickness possessed lower friction and was anticipated to be used as protecting coating in the field of boundary lubrication. The electrochemical corrosion behaviors of the prepared PDAc were investigated using the electrochemical station and a low corrosion current density was revealed, implying that the PDAc had good anti-corrosion capability and might find potential applications in the field of corrosion resistance.

  3. Microtribological and electrochemical corrosion behaviors of polydopamine coating on APTS-SAM modified Si substrate

    Science.gov (United States)

    Ou, Junfei; Wang, Jinqing; Liu, Sheng; Zhou, Jinfang; Ren, Sili; Yang, Shengrong

    2009-11-01

    A polydopamine coating (coded as PDAc) was prepared successfully on a Si substrate through a two-step process. Briefly, to improve the adhesion of PDAc on the Si substrate, a self-assembled monolayer of 3-aminopropyl triethoxysilane (coded as APTS-SAM) was firstly generated on the bare Si wafer. Thereafter, the PDAc with different thickness was fabricated through the chemical adsorption and autopolymerization of the dopamine hydrochloride on the APTS-SAM coated Si substrate. The formation of PDAc on the APTS-SAM modified Si substrate was proved by the characterizations of contact angle measurement, attenuated total reflectance Fourier transform infrared (ATR-FTIR) analysis, and X-ray photoelectron spectroscope (XPS), etc. The ellipsometric thickness measurement and atomic force microscopy (AFM) image analysis showed that the PDAc became thicker and rougher with the deposition time prolongation. Microtribological study showed that the thickness and roughness of the PDAc played a significant role in the tribological properties. In comparison with the bare Si substrate, the PDAc with thinner thickness possessed lower friction and was anticipated to be used as protecting coating in the field of boundary lubrication. The electrochemical corrosion behaviors of the prepared PDAc were investigated using the electrochemical station and a low corrosion current density was revealed, implying that the PDAc had good anti-corrosion capability and might find potential applications in the field of corrosion resistance.

  4. A Case Study on Procedural Modeling of Geo-Typical Southern Afghasistan Terrain

    NARCIS (Netherlands)

    Smelik, R.M.; Kraker, J.K. de; Tutenel, T.; Bidarra, R.

    2009-01-01

    A cost-effective method of military training is game-based training, for which custom geo-typical terrain models are often most suitable. However, for training instructors, scenario preparation is seriously slowed down by the complexity of current terrain modeling tools and methods. They would

  5. A Case Study on Procedural Modeling of Geo-Typical Southern Afghasistan Terrain

    NARCIS (Netherlands)

    Smelik, R.M.; Kraker, J.K. de; Tutenel, T.; Bidarra, R.

    2009-01-01

    A cost-effective method of military training is game-based training, for which custom geo-typical terrain models are often most suitable. However, for training instructors, scenario preparation is seriously slowed down by the complexity of current terrain modeling tools and methods. They would benef

  6. IMPROVING LEARNING THROUGH APPLICATION OF QUANTUM LEARNING TEACHING MODEL ON THE SUBJECT OF ADMINISTRATIVE PROCEDURE

    OpenAIRE

    Johan, Juliana; Widayastuti, Umi

    2013-01-01

    This study aims to increase student’s learning performance on “Doing Administration Procedure” through the implementation of quantum teaching model. The action research was conducted with three cycle. Each cycle is formulated with four stages: planning, action, observation and reflections. This research shown that the implementation of quantum teaching model has got positive contribution in increasing student’s learning achievement.

  7. Conformational heterogeneity of the SAM-I riboswitch transcriptional ON state: a chaperone-like role for S-adenosyl methionine.

    Science.gov (United States)

    Huang, Wei; Kim, Joohyun; Jha, Shantenu; Aboul-Ela, Fareed

    2012-05-18

    Riboswitches are promising targets for the design of novel antibiotics and engineering of portable genetic regulatory elements. There is evidence that variability in riboswitch properties allows tuning of expression for genes involved in different stages of biosynthetic pathways by mechanisms that are not currently understood. Here, we explore the mechanism for tuning of S-adenosyl methionine (SAM)-I riboswitch folding. Most SAM-I riboswitches function at the transcriptional level by sensing the cognate ligand SAM. SAM-I riboswitches orchestrate the biosynthetic pathways of cysteine, methionine, SAM, and so forth. We use base-pair probability predictions to examine the secondary-structure folding landscape of several SAM-I riboswitch sequences. We predict different folding behaviors for different SAM-I riboswitch sequences. We identify several "decoy" base-pairing interactions involving 5' riboswitch residues that can compete with the formation of a P1 helix, a component of the ligand-bound "transcription OFF" state, in the absence of SAM. We hypothesize that blockage of these interactions through SAM contacts contributes to stabilization of the OFF state in the presence of ligand. We also probe folding patterns for a SAM-I riboswitch RNA using constructs with different 3' truncation points experimentally. Folding was monitored through fluorescence, susceptibility to base-catalyzed cleavage, nuclear magnetic resonance, and indirectly through SAM binding. We identify key decision windows at which SAM can affect the folding pathway towards the OFF state. The presence of decoy conformations and differential sensitivities to SAM at different transcript lengths is crucial for SAM-I riboswitches to modulate gene expression in the context of global cellular metabolism.

  8. A generic and systematic procedure to derive a simplified model from the Anaerobic Digestion Model No. 1 (ADM1)

    OpenAIRE

    Ficara, E.; Leva, A.; Harmand, Jérôme

    2015-01-01

    The Anaerobic Digestion Model No.1 (ADM1) developed by the IWA Task Group for mathematical modelling of anaerobic digestion processes (Batstone et al. (2001) [1]) is a structural model which describes the main biochemical and physicochemical processes. For such purposes, other models have been proposed to describe anaerobic processes with a reduced set of parameters, state variables and processes. Among them, the Anaerobic Model No. 2 (AM2) proposed by Bernard et al. (2001) [2] which describe...

  9. The early 1990s change in ENSO-PSA-SAM relationships and its impact on Southern Hemisphere climate

    OpenAIRE

    Yu, JY; Paek, H; Saltzman, ES; T. Lee

    2015-01-01

    © 2015 American Meteorological Society. This study uncovers an early 1990s change in the relationships between El Niño-Southern Oscillation (ENSO) and two leading modes of the Southern Hemisphere (SH) atmospheric variability: the southern annular mode (SAM) and the Pacific-South American (PSA) pattern. During austral spring, while the PSA maintained a strong correlation with ENSO throughout the period 1948-2014, the SAM-ENSO correlation changed from being weak before the early 1990s to being ...

  10. Generation of induced pluripotent stem cells (iPSCs) stably expressing CRISPR-based synergistic activation mediator (SAM)

    DEFF Research Database (Denmark)

    Xiong, Kai; Zhou, Yan; Hyttel, Poul

    2016-01-01

    Human fibroblasts were engineered to express the CRISPR-based synergistic activation mediator (SAM) complex: dCas9-VP64 and MS2-P65-HSF1. Two induced pluripotent stem cells (iPSCs) clones expressing SAM were established by transducing these fibroblasts with lentivirus expressing OCT4, SOX2, KLF4...... a novel, useful tool to investigate genetic regulation of stem cell proliferation and differentiation through CRISPR-mediated activation of endogenous genes....

  11. Evidence for Perchlorates and the Origin of Chlorinated Hydrocarbons Detected by SAM at the Rocknest Aeolian Deposit in Gale Crater

    Science.gov (United States)

    Glavin, Daniel P.; Freissinet, Caroline; Miller, Kristen E.; Eigenbrode, Jennifer L.; Brunner, Anna E.; Buch, Arnaud; Sutter, Brad; Archer, P. Douglas, Jr.; Atreya, Sushil K.; Brinckerhoff, William B.; Cabane, Michel; Coll, Patrice; Conrad, Pamela G.; Coscia, David; Dworkin, Jason P.; Franz, Heather B.; Grotzinger, John P.; Leshin, Laurie A.; Martin, Mildred G.; McKay, Christopher; Ming, Douglas W.; Navarro-Gonzalez, Rafael; Pavlov, Alexander; Steele, Andrew; Summons, Roger E.; Szopa, Cyril; Teinturier, Samuel; Mahaffy, Paul R.

    2013-01-01

    A single scoop of the Rocknest aeolian deposit was sieved (less than 150 micrometers), and four separate sample portions, each with a mass of approximately 50 mg, were delivered to individual cups inside the Sample Analysis at Mars (SAM) instrument by the Mars Science Laboratory rover's sample acquisition system. The samples were analyzed separately by the SAM pyrolysis evolved gas and gas chromatograph mass spectrometer analysis modes. Several chlorinated hydrocarbons including chloromethane, dichloromethane, trichloromethane, a chloromethylpropene, and chlorobenzene were identified by SAM above background levels with abundances of approximately 0.01 to 2.3 nmol. The evolution of the chloromethanes observed during pyrolysis is coincident with the increase in O2 released from the Rocknest sample and the decomposition of a product of N-methyl-N-(tert-butyldimethylsilyl)-trifluoroacetamide (MTBSTFA), a chemical whose vapors were released from a derivatization cup inside SAM. The best candidate for the oxychlorine compounds in Rocknest is a hydrated calcium perchlorate (Ca(ClO4)2·nH2O), based on the temperature release of O2 that correlates with the release of the chlorinated hydrocarbons measured by SAM, although other chlorine-bearing phases are being considered. Laboratory analog experiments suggest that the reaction of Martian chlorine from perchlorate decomposition with terrestrial organic carbon from MTBSTFA during pyrolysis can explain the presence of three chloromethanes and a chloromethylpropene detected by SAM. Chlorobenzene may be attributed to reactions of Martian chlorine released during pyrolysis with terrestrial benzene or toluene derived from 2,6-diphenylphenylene oxide (Tenax) on the SAM hydrocarbon trap. At this time we do not have definitive evidence to support a nonterrestrial carbon source for these chlorinated hydrocarbons, nor do we exclude the possibility that future SAM analyses will reveal the presence of organic compounds native to the

  12. Modeling soil bulk density through a complete data scanning procedure: Heuristic alternatives

    Science.gov (United States)

    Shiri, Jalal; Keshavarzi, Ali; Kisi, Ozgur; Karimi, Sepideh; Iturraran-Viveros, Ursula

    2017-06-01

    Soil bulk density (BD) is very important factor in land drainage and reclamation, irrigation scheduling (for estimating the soil volumetric water content), and assessing soil carbon and nutrient stock as well as determining the pollutant mass balance in soils. Numerous pedotransfer functions have been suggested so far to relate the soil BD values to soil parameters (e.g. soil separates, carbon content, etc). The present paper aims at simulating soil BD using easily measured soil variables through heuristic gene expression programming (GEP), neural networks (NN), random forest (RF), support vector machine (SVM), and boosted regression trees (BT) techniques. The statistical Gamma test was utilized to identify the most influential soil parameters on BD. The applied models were assessed through k-fold testing where all the available data patterns were involved in the both training and testing stages, which provide an accurate assessment of the models accuracy. Some existing pedotransfer functions were also applied and compared with the heuristic models. The obtained results revealed that the heuristic GEP model outperformed the other applied models globally and per test stage. Nevertheless, the performance accuracy of the applied heuristic models was much better than those of the applied pedotransfer functions. Using k-fold testing provides a more-in-detail judgment of the models.

  13. Identification of an S-adenosylmethionine (SAM) dependent arsenic methyltransferase in Danio rerio

    Energy Technology Data Exchange (ETDEWEB)

    Hamdi, Mohamad [Department of Biological Sciences, Oakland University, Rochester, MI 48309 (United States); Yoshinaga, Masafumi; Packianathan, Charles; Qin, Jie [Department of Cellular Biology and Pharmacology, Herbert Wertheim College of Medicine, Florida International University, FL33199 (United States); Hallauer, Janell; McDermott, Joseph R. [Department of Biological Sciences, Oakland University, Rochester, MI 48309 (United States); Yang, Hung-Chi [Department of Medical Biotechnology and Laboratory Sciences, Chang-Gung University, Tao-Yuan, Kwei-San 333, Taiwan (China); Tsai, Kan-Jen [School of Medical Laboratory and Biotechnology, Chung Shan Medical University, Taichung, Taiwan (China); Liu, Zijuan, E-mail: liu2345@oakland.edu [Department of Biological Sciences, Oakland University, Rochester, MI 48309 (United States)

    2012-07-15

    Arsenic methylation is an important cellular metabolic process that modulates arsenic toxicity and carcinogenicity. Biomethylation of arsenic produces a series of mono-, di- and tri-methylated arsenic metabolites that can be detected in tissues and excretions. Here we report that zebrafish exposed to arsenite (As{sup III}) produces organic arsenicals, including MMA{sup III}, MMA{sup V} and DMA{sup V} with characteristic tissue ratios, demonstrating that an arsenic methylation pathway exists in zebrafish. In mammals, cellular inorganic arsenic is methylated by a SAM-dependent arsenic methyltransferase, AS3MT. A zebrafish arsenic methyltransferase homolog, As3mt, was identified by sequence alignment. Western blotting analysis showed that As3mt was universally expressed in zebrafish tissues. Prominent expression in liver and intestine correlated with methylated arsenic metabolites detected in those tissues. As3mt was expressed in and purified from Escherichia coli for in vitro functional studies. Our results demonstrated that As3mt methylated As{sup III} to DMA{sup V} as an end product and produced MMA{sup III} and MMA{sup V} as intermediates. The activity of As3mt was inhibited by elevated concentrations of the substrate As{sup III} as well as the metalloid selenite, which is a well-known antagonistic micronutrient of arsenic toxicity. The activity As3mt was abolished by substitution of either Cys160 or Cys210, which corresponds to conserved cysteine residues in AS3MT homologs, suggesting that they are involved in catalysis. Expression in zebrafish of an enzyme that has a similar function to human and rodent orthologs in catalyzing intracellular arsenic biomethylation validates the applicability of zebrafish as a valuable vertebrate model for understanding arsenic-associated diseases in humans. -- Highlights: ► Zebrafish methylated As{sup III} to MMA{sup III}, MMA{sup V} and DMA{sup V}. ► A zebrafish arsenic methyltransferase (As3mt) was purified in E. coli.

  14. The Seismic Aftershock Monitoring System (SAMS) for OSI - Experiences from IFE14

    Science.gov (United States)

    Gestermann, Nicolai; Sick, Benjamin; Häge, Martin; Blake, Thomas; Labak, Peter; Joswig, Manfred

    2016-04-01

    An on-site inspection (OSI) is the third of four elements of the verification regime of the Comprehensive Nuclear-Test-Ban Treaty (CTBT). The sole purpose of an OSI is to confirm whether a nuclear weapon test explosion or any other nuclear explosion has been carried out in violation of the treaty and to gather any facts which might assist in identifying any possible violator. It thus constitutes the final verification measure under the CTBT if all other available measures are not able to confirm the nature of a suspicious event. The Provisional Technical Secretariat (PTS) carried out the Integrated Field Exercise 2014 (IFE14) in the Dead Sea Area of Jordan from 3 November to 9. December 2014. It was a fictitious OSI whose aim was to test the inspection capabilities in an integrated manner. The technologies allowed during an OSI are listed in the Treaty. The aim of the Seismic Aftershock Monitoring System (SAMS) is to detect and localize aftershocks of low magnitudes of the triggering event or collapses of underground cavities. The locations of these events are expected in the vicinity of a possible previous explosion and help to narrow down the search area within an inspection area (IA) of an OSI. The success of SAMS depends on the main elements, hardware, software, deployment strategy, the search logic and not least the effective use of personnel. All elements of SAMS were tested and improved during the Built-Up Exercises (BUE) which took place in Austria and Hungary. IFE14 provided more realistic climatic and hazardous terrain conditions with limited resources. Significant variations in topography of the IA of IFE14 in the mountainous Dead Sea Area of Jordan led to considerable challenges which were not expected from experiences encountered during BUE. The SAMS uses mini arrays with an aperture of about 100 meters and with a total of 4 elements. The station network deployed during IFE14 and results of the data analysis will be presented. Possible aftershocks of

  15. Detecting Complex Organic Compounds Using the SAM Wet Chemistry Experiment on Mars

    Science.gov (United States)

    Freissinet, C.; Buch, A.; Glavin, D. P.; Brault, A.; Eigenbrode, J. L.; Kashyap, S.; Martin, M. G.; Miller, K.; Mahaffy, P. R.; Team, M.

    2013-12-01

    The search for organic molecules on Mars can provide important first clues of abiotic chemistry and/or extinct or extant biota on the planet. Gas Chromatography Mass Spectrometry (GC-MS) is currently the most relevant space-compatible analytical tool for the detection of organic compounds. Nevertheless, GC separation is intrinsically restricted to volatile molecules, and many molecules of astrobiological interest are chromatographically refractory or polar. To analyze these organics such as amino acids, nucleobases and carboxylic acids in the Martian regolith, an additional derivatization step is required to transform them into volatile derivatives that are amenable to GC analysis. As part of the Sample Analysis at Mars (SAM) experiment onboard Mars Science Laboratory (MSL) Curiosity rover, a single-step protocol of extraction and chemical derivatization with the silylating reagent N-methyl-N-(tert-butyldimethylsilyl)-trifluoroacetamide (MTBSTFA) has been developed to reach a wide range of astrobiology-relevant refractory organic molecules (Mahaffy et al. 2012; Stalport et al. 2012). Seven cups in the SAM instrument are devoted to MTBSTFA derivatization. However, this chemical reaction adds a protective silyl group in place of each labile hydrogen, which makes the molecule non-identifiable in common mass spectra libraries. Therefore, we have created an extended library of mass spectra of MTBSTFA derivatized compounds of interest, considering their potential occurrence in Mars soils. We then looked specifically for MTBSTFA derivatized compounds using the existing and the newly created library, in various Mars analog soils. To enable a more accurate interpretation of the in situ derivatization GC-MS results that will be obtained by SAM, the lab experiments were performed as close as possible to the SAM flight instrument experimental conditions. Our first derivatization experiments display promising results, the laboratory system permitting an extraction and detection

  16. Competition as a Discovery Procedure: Schumpeter Meets Hayek in a Model of Innovation

    OpenAIRE

    Pedro Bento

    2013-01-01

    I incorporate an insight of Friedrich Hayek - that competition allows a thousand flowers to bloom, and discovers the best among them - into a model of Schumpeterian innovation. Firms face uncertainty about the optimal direction of innovation, so more innovations implies a higher expected value of the `best' innovation. The model accounts for two seemingly contradictory relationships reported in recent empirical studies - a positive relationship between competition and industry-level productiv...

  17. Evidence for perchlorates and the origin of chlorinated hydrocarbons detected by SAM at the Rocknest aeolian deposit in Gale Crater

    Science.gov (United States)

    Glavin, Daniel P.; Freissinet, Caroline; Miller, Kristen E.; Eigenbrode, Jennifer L.; Brunner, Anna E.; Buch, Arnaud; Sutter, Brad; Archer, P. Douglas; Atreya, Sushil K.; Brinckerhoff, William B.; Cabane, Michel; Coll, Patrice; Conrad, Pamela G.; Coscia, David; Dworkin, Jason P.; Franz, Heather B.; Grotzinger, John P.; Leshin, Laurie A.; Martin, Mildred G.; McKay, Christopher; Ming, Douglas W.; Navarro-González, Rafael; Pavlov, Alexander; Steele, Andrew; Summons, Roger E.; Szopa, Cyril; Teinturier, Samuel; Mahaffy, Paul R.

    2013-10-01

    A single scoop of the Rocknest aeolian deposit was sieved (trichloromethane, a chloromethylpropene, and chlorobenzene were identified by SAM above background levels with abundances of ~0.01 to 2.3 nmol. The evolution of the chloromethanes observed during pyrolysis is coincident with the increase in O2 released from the Rocknest sample and the decomposition of a product of N-methyl-N-(tert-butyldimethylsilyl)-trifluoroacetamide (MTBSTFA), a chemical whose vapors were released from a derivatization cup inside SAM. The best candidate for the oxychlorine compounds in Rocknest is a hydrated calcium perchlorate (Ca(ClO4)2·nH2O), based on the temperature release of O2 that correlates with the release of the chlorinated hydrocarbons measured by SAM, although other chlorine-bearing phases are being considered. Laboratory analog experiments suggest that the reaction of Martian chlorine from perchlorate decomposition with terrestrial organic carbon from MTBSTFA during pyrolysis can explain the presence of three chloromethanes and a chloromethylpropene detected by SAM. Chlorobenzene may be attributed to reactions of Martian chlorine released during pyrolysis with terrestrial benzene or toluene derived from 2,6-diphenylphenylene oxide (Tenax) on the SAM hydrocarbon trap. At this time we do not have definitive evidence to support a nonterrestrial carbon source for these chlorinated hydrocarbons, nor do we exclude the possibility that future SAM analyses will reveal the presence of organic compounds native to the Martian regolith.

  18. Sum-frequency generation analyses of the structure of water at amphoteric SAM-liquid water interfaces.

    Science.gov (United States)

    Nomura, Kouji; Nakaji-Hirabayashi, Tadashi; Gemmei-Ide, Makoto; Kitano, Hiromi; Noguchi, Hidenori; Uosaki, Kohei

    2014-09-01

    Surfaces of both a cover glass and the flat plane of a semi-cylindrical quartz prism were modified with a mixture of positively and negatively charged silane coupling reagents (3-aminopropyltriethoxysilane (APTES) and 3-(trihydroxysilyl)propylmethylphosphonate (THPMP), respectively). The glass surface modified with a self-assembled monolayer (SAM) prepared at a mixing ratio of APTES:THPMP=4:6 was electrically almost neutral and was resistant to non-specific adsorption of proteins, whereas fibroblasts gradually adhered to an amphoteric (mixed) SAM surface probably due to its stiffness, though the number of adhered cells was relatively small. Sum frequency generation (SFG) spectra indicated that total intensity of the OH stretching region (3000-3600cm(-1)) for the amphoteric SAM-modified quartz immersed in liquid water was smaller than those for the positively and negatively charged SAM-modified quartz prisms and a bare quartz prism in contact with liquid water. These results suggested that water molecules at the interface of water and an amphoteric SAM-modified quartz prism are not strongly oriented in comparison with those at the interface of a lopsidedly charged SAM-modified quartz prism and bare quartz. The importance of charge neutralization for the anti-biofouling properties of solid materials was strongly suggested.

  19. STM study of short chain hydrophobic thiol SAMs on HOPG and Au capped HOPG under ambient conditions

    Science.gov (United States)

    Bowers, Alexis; Maurer, Mackenzie; Senevirathne, Indrajith

    2015-03-01

    Self-assembled monolayer(SAM) surfaces provide common architecture in many device applications including sensor engineering. The conductivity characteristics and surface molecular structure and orientation of these SAM are important as physiochemical properties are dependent on the surface arrangement. SAMs used in this study are short chain -R terminated (hydrophobic) 1-Butanethiol on Highly Oriented Pyrolytic Graphite (HOPG) surface and on thermally annealed Au thin film capped on HOPG. Scanning Tunneling Microscopy (STM), contact angle measurements and reflective spectroscopy are used to assess the SAM layered surfaces. Solutions of 1-Butanethiol, dissolved in 200 proof Ethanol with 5mM concentration were prepared for the self-assembly process. These solutions were used in developing SAMs on purchased, freshly cleaved HOPG substrates. Au thin layers were sputter deposited on HOPG and subsequently annealed. Initial data shows low Au deposition yields rougher inconsistent surfaces. Ambient conditions under which data was obtained impose fresh surfaces for each investigation. Tentative surface structure, consistency and thiol molecular arrangement of the SAM layer on HOPG and Au capped HOPG will be discussed. National Science Foundation.

  20. Supplementary Material for: A new mode of SAM domain mediated oligomerization observed in the CASKIN2 neuronal scaffolding protein

    KAUST Repository

    Smirnova, Ekaterina

    2016-01-01

    Abstract Background CASKIN2 is a homolog of CASKIN1, a scaffolding protein that participates in a signaling network with CASK (calcium/calmodulin-dependent serine kinase). Despite a high level of homology between CASKIN2 and CASKIN1, CASKIN2 cannot bind CASK due to the absence of a CASK Interaction Domain and consequently, may have evolved undiscovered structural and functional distinctions. Results We demonstrate that the crystal structure of the Sterile Alpha Motif (SAM) domain tandem (SAM1-SAM2) oligomer from CASKIN2 is different than CASKIN1, with the minimal repeating unit being a dimer, rather than a monomer. Analytical ultracentrifugation sedimentation velocity methods revealed differences in monomer/dimer equilibria across a range of concentrations and ionic strengths for the wild type CASKIN2 SAM tandem and a structure-directed double mutant that could not oligomerize. Further distinguishing CASKIN2 from CASKIN1, EGFP-tagged SAM tandem proteins expressed in Neuro2a cells produced punctae that were distinct both in shape and size. Conclusions This study illustrates a new way in which neuronal SAM domains can assemble into large macromolecular assemblies that might concentrate and amplify synaptic responses.

  1. Adverse events related to gastrointestinal endoscopic procedures in pediatric patients under anesthesia care and a predictive risk model (AEGEP Study).

    Science.gov (United States)

    Ariza, F; Montilla-Coral, D; Franco, O; González, L F; Lozano, L C; Torres, A M; Jordán, J; Blanco, L F; Suárez, L; Cruz, G; Cepeda, M

    2014-01-01

    Multiple studies have analyzed perioperative factors related to adverse events (AEs) in children who require gastrointestinal endoscopic procedures (GEP) in settings where deep sedation is the preferred anesthetic technique over general anesthesia (GA) but not for the opposite case. We reviewed our anesthesia institutional database, seeking children less than 12 years who underwent GEP over a 5-year period. A logistic regression was used to determine significant associations between preoperative conditions, characteristics of the procedure, airway management, anesthetic approaches and the presence of serious and non-serious AEs. GA was preferred over deep sedation [77.8% vs. 22.2% in 2178 GEP under anesthesia care (n=1742)]. We found 96 AEs reported in 77 patients, including hypoxemia (1.82%), bronchospasm (1.14%) and laryngospasm (0.91%) as the most frequent. There were 2 cases of severe bradycardia related to laryngospasm/hypoxemia and a case of aspiration resulting in unplanned hospitalization, but there were no cases of intra- or postoperative deaths. Final predictive model for perioperative AEs included age <1 year, upper respiratory tract infections (URTI) <1 week prior to the procedure and low weight for the age (LWA) as independent risk factors and ventilation by facial mask as a protector against these events (p<0.05). AEs are infrequent and severe ones are remote in a setting where AG is preferred over deep sedation. Ventilatory AEs are the most frequent and depend on biometrical and comorbid conditions more than anesthetic drugs chosen. Age <1 year, history of URTI in the week prior to the procedure and LWA work as independent risk factors for AEs in these patients. Copyright © 2013 Sociedad Española de Anestesiología, Reanimación y Terapéutica del Dolor. Published by Elsevier España. All rights reserved.

  2. A novel homogenization procedure to model the skin layers in LF numerical dosimetry

    Science.gov (United States)

    De Santis, Valerio; Chen, Xi Lin; Cruciani, Silvano; Campi, Tommaso; Feliziani, Mauro

    2016-06-01

    In this study we focus on the validity of the skin layer currently implemented in up-to-date human-body anatomical models employed in low frequency (LF) numerical dosimetry. Indeed, the several layers of the skin structure, i.e. the stratum corneum (SC), dermis, and epidermis are in these models embedded into a unique fairly-thick (2-3 mm) layer encompassing all of them. While a previous work from the authors showed that for normal-standing (or limb-non-touching) postures a single-layer skin model could conservatively estimate the peak electric field induced in the skin, at least a two-layer skin model comprising of the SC and the remaining skin layers should be used for limb-touching exposure scenarios. This implies notable efforts to discretize the tiny SC layer questioning the validity of current anatomical models. A novel strategy based on the homogenization of the several skin layers has been therefore proposed in order to eliminate the SC from the computational domain opening the doors to future LF magnetic applications even for limb-touching scenarios.

  3. Building self-consistent, short-term earthquake probability (STEP models: improved strategies and calibration procedures

    Directory of Open Access Journals (Sweden)

    Damiano Monelli

    2010-11-01

    Full Text Available We present here two self-consistent implementations of a short-term earthquake probability (STEP model that produces daily seismicity forecasts for the area of the Italian national seismic network. Both implementations combine a time-varying and a time-invariant contribution, for which we assume that the instrumental Italian earthquake catalog provides the best information. For the time-invariant contribution, the catalog is declustered using the clustering technique of the STEP model; the smoothed seismicity model is generated from the declustered catalog. The time-varying contribution is what distinguishes the two implementations: 1 for one implementation (STEP-LG, the original model parameterization and estimation is used; 2 for the other (STEP-NG, the mean abundance method is used to estimate aftershock productivity. In the STEP-NG implementation, earthquakes with magnitude up to ML= 6.2 are expected to be less productive compared to the STEP-LG implementation, whereas larger earthquakes are expected to be more productive. We have retrospectively tested the performance of these two implementations and applied likelihood tests to evaluate their consistencies with observed earthquakes. Both of these implementations were consistent with the observed earthquake data in space: STEP-NG performed better than STEP-LG in terms of forecast rates. More generally, we found that testing earthquake forecasts issued at regular intervals does not test the full power of clustering models, and future experiments should allow for more frequent forecasts starting at the times of triggering events.

  4. Procedure to Solve Network DEA Based on a Virtual Gap Measurement Model

    Directory of Open Access Journals (Sweden)

    Fuh-hwa Franklin Liu

    2017-01-01

    Full Text Available Network DEA models assess production systems that contain a set of network-structured subsystems. Each subsystem has input and output measures from and to the external network and has intermediate measures that link to other subsystems. Most published studies demonstrate how to employ DEA models to establish network DEA models. Neither static nor dynamic network DEA models adjust the links. This paper applies the virtual gap measurement (VGM model to construct a mixed integer program to solve dynamic network DEA problems. The mixed integer program sets the total numbers of “as-input” and “as-output” equal to the total number of links in the objective function. To obtain the best-practice efficiency, each DMU determines a set of weights for inputs, outputs, and links. The links are played either “as-input” or “as-output.” Input and as-input measures reduce slack, whereas output and as-output measures increase slacks to attain their target on the production frontier.

  5. Multiscale modelling as a tool to prescribe realistic boundary conditions for the study of surgical procedures.

    Science.gov (United States)

    Laganà, K; Dubini, G; Migliavacca, F; Pietrabissa, R; Pennati, G; Veneziani, A; Quarteroni, A

    2002-01-01

    This work was motivated by the problems of analysing detailed 3D models of vascular districts with complex anatomy. It suggests an approach to prescribing realistic boundary conditions to use in order to obtain information on local as well as global haemodynamics. A method was developed which simultaneously solves Navier-Stokes equations for local information and a non-linear system of ordinary differential equations for global information. This is based on the principle that an anatomically detailed 3D model of a cardiovascular district can be achieved by using the finite element method. In turn the finite element method requires a specific boundary condition set. The approach outlined in this work is to include the system of ordinary differential equations in the boundary condition set. Such a multiscale approach was first applied to two controls: (i) a 3D model of a straight tube in a simple hydraulic network and (ii) a 3D model of a straight coronary vessel in a lumped-parameter model of the cardiovascular system. The results obtained are very close to the solutions available for the pipe geometry. This paper also presents preliminary results from the application of the methodology to a particular haemodynamic problem: namely the fluid dynamics of a systemic-to-pulmonary shunt in paediatric cardiac surgery.

  6. Prediction of melting temperatures in fluorescence in situ hybridization (FISH) procedures using thermodynamic models

    DEFF Research Database (Denmark)

    Fontenete, Sílvia; Guimarães, Nuno; Wengel, Jesper

    2016-01-01

    Abstract The thermodynamics and kinetics of DNA hybridization, i.e. the process of self-assembly of one, two or more complementary nucleic acid strands, has been studied for many years. The appearance of the nearest-neighbor model led to several theoretical and experimental papers on DNA thermody......Abstract The thermodynamics and kinetics of DNA hybridization, i.e. the process of self-assembly of one, two or more complementary nucleic acid strands, has been studied for many years. The appearance of the nearest-neighbor model led to several theoretical and experimental papers on DNA...... thermodynamics that provide reasonably accurate thermodynamic information on nucleic acid duplexes and allow estimation of the melting temperature. Because there are no thermodynamic models specifically developed to predict the hybridization temperature of a probe used in a fluorescence in situ hybridization...

  7. Modeling of inter-sample variation in flow cytometric data with the joint clustering and matching procedure.

    Science.gov (United States)

    Lee, Sharon X; McLachlan, Geoffrey J; Pyne, Saumyadipta

    2016-01-01

    We present an algorithm for modeling flow cytometry data in the presence of large inter-sample variation. Large-scale cytometry datasets often exhibit some within-class variation due to technical effects such as instrumental differences and variations in data acquisition, as well as subtle biological heterogeneity within the class of samples. Failure to account for such variations in the model may lead to inaccurate matching of populations across a batch of samples and poor performance in classification of unlabeled samples. In this paper, we describe the Joint Clustering and Matching (JCM) procedure for simultaneous segmentation and alignment of cell populations across multiple samples. Under the JCM framework, a multivariate mixture distribution is used to model the distribution of the expressions of a fixed set of markers for each cell in a sample such that the components in the mixture model may correspond to the various populations of cells, which have similar expressions of markers (that is, clusters), in the composition of the sample. For each class of samples, an overall class template is formed by the adoption of random-effects terms to model the inter-sample variation within a class. The construction of a parametric template for each class allows for direct quantification of the differences between the template and each sample, and also between each pair of samples, both within or between classes. The classification of a new unclassified sample is then undertaken by assigning the unclassified sample to the class that minimizes the distance between its fitted mixture density and each class density as provided by the class templates. For illustration, we use a symmetric form of the Kullback-Leibler divergence as a distance measure between two densities, but other distance measures can also be applied. We show and demonstrate on four real datasets how the JCM procedure can be used to carry out the tasks of automated clustering and alignment of cell

  8. Acucise™ endopyelotomy in a porcine model: procedure standardization and analysis of safety and immediate efficacy

    Directory of Open Access Journals (Sweden)

    Andreoni Cássio

    2004-01-01

    Full Text Available PURPOSE: The study here presented was done to test the technical reliability and immediate efficacy of the Acucise device using a standardized technique. MATERIALS AND METHODS: 56 Acucise procedures were performed in pigs by a single surgeon who used a standardized technique: insert 5F angiographic catheter bilaterally up to the midureter, perform retrograde pyelogram, Amplatz super-stiff guidewire is advanced up to the level of the renal pelvis, angiographic catheters are removed, Acucise catheter balloon is advanced to the ureteropelvic junction (UPJ level, the super-stiff guide-wire is removed and the contrast medium in the renal pelvis is aspirated and replaced with distilled water, activate Acucise at 75 watts of pure cutting current, keep the balloon fully inflated for 10 minutes, perform retrograde ureteropyelogram to document extravasation, remove Acucise catheter and pass an ureteral stent and remove guide-wire. RESULTS: In no case did the Acucise device present malfunction. The electrocautery activation time was 2.2 seconds (ranging from 2 to 4 seconds. The extravasation of contrast medium, visible by fluoroscopy, occurred in 53 of the 56 cases (94.6%. In no case there was any evidence of intraoperative hemorrhage. CONCLUSIONS: This study revealed that performing Acucise endopyelotomy routinely in a standardized manner could largely preclude intraoperative device malfunction and eliminate complications while achieving a successful incision in the UPJ. With the guidelines that were used in this study, we believe that Acucise endopyelotomy can be completed successfully and safely in the majority of selected patients with UPJ obstruction.

  9. Optimization of extraction procedures for ecotoxicity analyses: Use of TNT contaminated soil as a model

    Energy Technology Data Exchange (ETDEWEB)

    Sunahara, G.I.; Renoux, A.Y.; Dodard, S.; Paquet, L.; Hawari, J. [BRI, Montreal, Quebec (Canada); Ampleman, G.; Lavigne, J.; Thiboutot, S. [DREV, Courcelette, Quebec (Canada)

    1995-12-31

    The environmental impact of energetic substances (TNT, RDX, GAP, NC) in soil is being examined using ecotoxicity bioassays. An extraction method was characterized to optimize bioassay assessment of TNT toxicity in different soil types. Using the Microtox{trademark} (Photobacterium phosphoreum) assay and non-extracted samples, TNT was most acutely toxic (IC{sub 50} = 1--9 PPM) followed by RDX and GAP; NC did not show obvious toxicity (probably due to solubility limitations). TNT (in 0.25% DMSO) yielded an IC{sub 50} 0.98 + 0.10 (SD) ppm. The 96h-EC{sub 50} (Selenastrum capricornutum growth inhibition) of TNT (1. 1 ppm) was higher than GAP and RDX; NC was not apparently toxic (probably due to solubility limitations). Soil samples (sand or a silt-sand mix) were spiked with either 2,000 or 20,000 mg TNT/kg soil, and were adjusted to 20% moisture. Samples were later mixed with acetonitrile, sonicated, and then treated with CaCl{sub 2} before filtration, HPLC and ecotoxicity analyses. Results indicated that: the recovery of TNT from soil (97.51% {+-} 2.78) was independent of the type of soil or moisture content; CaCl{sub 2} interfered with TNT toxicity and acetonitrile extracts could not be used directly for algal testing. When TNT extracts were diluted to fixed concentrations, similar TNT-induced ecotoxicities were generally observed and suggested that, apart from the expected effects of TNT concentrations in the soil, the soil texture and the moisture effects were minimal. The extraction procedure permits HPLC analyses as well as ecotoxicity testing and minimizes secondary soil matrix effects. Studies will be conducted to study the toxic effects of other energetic substances present in soil using this approach.

  10. Major risk-stratification models fail to predict outcomes in patients with multivessel coronary artery disease undergoing simultaneous hybrid procedure

    Institute of Scientific and Technical Information of China (English)

    WANG Hao-ran; ZHENG Zhe; XIONG Hui; XU Bo; LI Li-huan; GAO Run-lin; HU Sheng-shou

    2013-01-01

    Background The hybrid procedure for coronary heart disease combines minimally invasive coronary artery bypass grafting (CABG) and percutaneous coronary intervention (PCI) and is an alternative to revascularization treatment.We sought to assess the predictive value of four risk-stratification models for risk assessment of major adverse cardiac and cerebrovascular events (MACCE) in patients with multivessel disease undergoing hybrid coronary revascularization.Methods The data of 120 patients were retrospectively collected and the SYNTAX score,EuroSCORE,SinoSCORE and the Global Risk Classification (GRC) calculated for each patient.The outcomes of interest were 2.7-year incidences of MACCE,including death,myocardial infarction,stroke,and any-vessel revascularization.Results During a mean of 2.7-year follow-up,actuarial survival was 99.17%,and no myocardial infarctions occurred.The discriminatory power (area under curve (AUC)) of the SYNTAX score,EuroSCORE,SinoSCORE and GRC for 2.7-year MACCE was 0.60 (95% confidence interval 0.42-0.77),0.65 (0.47-0.82),0.57 (0.39-0.75) and 0.65 (0.46-0.83),respectively.The calibration characteristics of the SYNTAX score,EuroSCORE,SinoSCORE and GRC were 3.92 (P=0.86),5.39 (P=0.37),13.81 (P=0.32) and 0.02 (P=0.89),respectively.Conclusions In patients with multivessel disease undergoing a hybrid procedure,the SYNTAX score,EuroSCORE,SinoSCORE and GRC were inaccurate in predicting MACCE.Modifying risk-stratification models to improve the predictive value for a hybrid procedure is needed.

  11. Calibration procedure for a potato crop growth model using information from across Europe

    DEFF Research Database (Denmark)

    Heidmann, Tove; Tofteng, C; Abrahamsen, P

    2008-01-01

    In the FertOrgaNic EU project, 3 years of field experiments with drip irrigation and fertigation were carried out at six different sites across Europe, involving seven different varieties of potato. The Daisy model, which simulates plant growth together with water and nitrogen dynamics, was used...

  12. The Chain-Link Fence Model: A Framework for Creating Security Procedures

    Science.gov (United States)

    Houghton, Robert F.

    2013-01-01

    A long standing problem in information technology security is how to help reduce the security footprint. Many specific proposals exist to address specific problems in information technology security. Most information technology solutions need to be repeatable throughout the course of an information systems lifecycle. The Chain-Link Fence Model is…

  13. Procedure for the systematic orientation of digitised cranial models. Design and validation.

    Science.gov (United States)

    Bailo, M; Baena, S; Marín, J J; Arredondo, J M; Auría, J M; Sánchez, B; Tardío, E; Falcón, L

    2015-12-01

    Comparison of bony pieces requires that they are oriented systematically to ensure that homologous regions are compared. Few orientation methods are highly accurate; this is particularly true for methods applied to three-dimensional models obtained by surface scanning, a technique whose special features make it a powerful tool in forensic contexts. The aim of this study was to develop and evaluate a systematic, assisted orientation method for aligning three-dimensional cranial models relative to the Frankfurt Plane, which would be produce accurate orientations independent of operator and anthropological expertise. The study sample comprised four crania of known age and sex. All the crania were scanned and reconstructed using an Eva Artec™ portable 3D surface scanner and subsequently, the position of certain characteristic landmarks were determined by three different operators using the Rhinoceros 3D surface modelling software. Intra-observer analysis showed a tendency for orientation to be more accurate when using the assisted method than when using conventional manual orientation. Inter-observer analysis showed that experienced evaluators achieve results at least as accurate if not more accurate using the assisted method than those obtained using manual orientation; while inexperienced evaluators achieved more accurate orientation using the assisted method. The method tested is a an innovative system capable of providing very precise, systematic and automatised spatial orientations of virtual cranial models relative to standardised anatomical planes independent of the operator and operator experience.

  14. The Chain-Link Fence Model: A Framework for Creating Security Procedures

    Science.gov (United States)

    Houghton, Robert F.

    2013-01-01

    A long standing problem in information technology security is how to help reduce the security footprint. Many specific proposals exist to address specific problems in information technology security. Most information technology solutions need to be repeatable throughout the course of an information systems lifecycle. The Chain-Link Fence Model is…

  15. Fused Deposition Modeling 3D Printing for (Bio)analytical Device Fabrication : Procedures, Materials, and Applications

    NARCIS (Netherlands)

    Salentijn, Gert Ij; Oomen, Pieter E; Grajewski, Maciej; Verpoorte, Elisabeth

    2017-01-01

    In this work, the use of fused deposition modeling (FDM) in a (bio)analytical/lab-on-a-chip research laboratory is described. First, the specifications of this 3D printing method that are important for the fabrication of (micro)devices were characterized for a benchtop FDM 3D printer. These include

  16. Experimental Testing Procedures and Dynamic Model Validation for Vanadium Redox Flow Battery Storage System

    DEFF Research Database (Denmark)

    Baccino, Francesco; Marinelli, Mattia; Nørgård, Per Bromand

    2013-01-01

    The paper aims at characterizing the electrochemical and thermal parameters of a 15 kW/320 kWh vanadium redox flow battery (VRB) installed in the SYSLAB test facility of the DTU Risø Campus and experimentally validating the proposed dynamic model realized in Matlab-Simulink. The adopted testing...

  17. A Systematic and Numerically Efficient Procedure for Stable Dynamic Model Inversion of LTI Systems

    NARCIS (Netherlands)

    George, K.; Verhaegen, M.; Scherpen, J.M.A.

    1999-01-01

    Output tracking via the novel Stable Dynamic model Inversion (SDI) technique, applicable to non-minimum phase systems, and which naturally takes into account the presence of noise in target time histories, is considered here. We are motivated by the typical need to replicate time signals in the auto

  18. A general procedure to model and to analyze pipelines with real defects caused by corrosion measured in situ

    Energy Technology Data Exchange (ETDEWEB)

    Ferreira, Adriano D.M.; Souza, Antonio H.T. de; Willmersdorf, Ramiro B.; Lira, Paulo R.M. [Universidade Federal de Pernambuco (UFPE), Recife, PE (Brazil). Dept. de Engenharia Mecanica; Silvana, M.B. Afonso; Motta, Renato S. [Universidade Federal de Pernambuco (UFPE), Recife, PE (Brazil). Dept. de Engenharia Civil; Andrade, Edmundo Q. de [PETROBRAS S.A., Rio de Janeiro, RJ (Brazil). Centro de Pesquisas

    2009-07-01

    The main purpose of this work is to present an automatic procedure to generate a geometric model and FE meshes from data provided by some field inspection. From the data provided a smooth geometry representation in the corroded area of the pipeline is generated. This generation is coupled with surface tools provided by MSC.Patran Soft-ware, pre and post-processing, program. To accomplish the generation of the whole model, discretization rules were coded for the corroded area and for the interfaces necessary to fulfill the discretization of the whole model. In this work, the module that automatized the generation of computer models of identified defects with irregular geometry is described in detail. These modules were implemented with functions written in the programming language PCL (Patran Command Language) and added to the program PIPEFLAW (Cabral, 2007) developed by the group PADMEC (High Perform Computing on Computational Mechanics) from UFPE. The program has a friendly and customized graphical interface which allows the user to provide the main parameters of the pipe and defect. A structural non-linear analysis was performed for some models to obtain the internal pressure that would cause rupture of the model, representing the mechanical failure of the pipeline. For the purpose of numerical analysis the commercial finite element program ANSYS was used, which were being managed by scripts written in Phyton. (author)

  19. Numerical Simulation Procedure for Modeling TGO Crack Propagation and TGO Growth in Thermal Barrier Coatings upon Thermal-Mechanical Cycling

    Directory of Open Access Journals (Sweden)

    Ding Jun

    2014-01-01

    Full Text Available This paper reports a numerical simulation procedure to model crack propagation in TGO layer and TGO growth near a surface groove in metal substrate upon multiple thermal-mechanical cycles. The material property change method is employed to model TGO formation cycle by cycle, and the creep properties for constituent materials are also incorporated. Two columns of repeated nodes are placed along the interface of the potential crack, and these nodes are bonded together as one node at a geometrical location. In terms of critical crack opening displacement criterion, onset of crack propagation in TGO layer has been determined by finite element analyses in comparison with that without predefined crack. Then, according to the results from the previous analyses, the input values for the critical failure parameters for the subsequent analyses can be decided. The robust capabilities of restart analysis in ABAQUS help to implement the overall simulation for TGO crack propagation. The comparison of the TGO final deformation profile between numerical and experimental observation shows a good agreement indicating the correctness and effectiveness of the present procedure, which can guide the prediction of the failure in TGO for the future design and optimization for TBC system.

  20. [Rapid and Dynamic Determination Models of Amino Acids and Catechins Concentrations during the Processing Procedures of Keemun Black Tea].

    Science.gov (United States)

    Ning, Jing-ming; Yan, Ling; Zhang, Zheng-zhu; Wei, Ling-dong; Li, Lu-qing; Fang, Jun-ting; Huang, Cai-wang

    2015-12-01

    Tea is one of the most popular beverages in the world. For the contribution to the taste and healthy functions of tea, amino acids and catechins are important components. Among different kinds of black teas in the world, Keemun black tea has the famous and specific fragrance, "Keemun aroma". During the processing procedure of Keemun black tea, the contents of amino acids and catechins changed greatly, and the differences of these concentrations during processing varied significantly. However, a rapid and dynamic determination method during the processing procedure was not existed up to now. In order to find out a rapid determination method for the contents of amino acids and catechins during the processing procedure of Keemun black tea, the materials of fresh leaves, withered leaves, twisted leaves, fermented leaves, and crude tea (after drying) were selected to acquire their corresponding near infrared spectroscopy and obtain their contents of amino acids and catechins by chemical analysis method. The original spectra data were preprocessed by the Standard Normal Variate Transformation (SNVT) method. And the model of Near Infrared (NIR) spectroscopy with the contents of amino acids and catechins combined with Synergy Interval Partial Least squares (Si-PLS) was established in this study. The correlation coefficients and the cross validation root mean square error are treated as the efficient indexes for evaluating models. The results showed that the optimal prediction model of amino acids by Si-PLS contained 20 spectral intervals combined with 4 subintervals and 9 principal component factors. The correlation coefficient and the root mean square error of the calibration set were 0. 955 8 and 1. 768, respectively; the correlation coefficient and the root mean square error of the prediction set were 0. 949 5 and 2. 16, respectively. And the optimal prediction model of catechins by Si-PLS contained 20 spectral intervals combined with 3 subintervals and 10 principal

  1. Developing a spatial-statistical model and map of historical malaria prevalence in Botswana using a staged variable selection procedure

    Directory of Open Access Journals (Sweden)

    Mabaso Musawenkosi LH

    2007-09-01

    Full Text Available Abstract Background Several malaria risk maps have been developed in recent years, many from the prevalence of infection data collated by the MARA (Mapping Malaria Risk in Africa project, and using various environmental data sets as predictors. Variable selection is a major obstacle due to analytical problems caused by over-fitting, confounding and non-independence in the data. Testing and comparing every combination of explanatory variables in a Bayesian spatial framework remains unfeasible for most researchers. The aim of this study was to develop a malaria risk map using a systematic and practicable variable selection process for spatial analysis and mapping of historical malaria risk in Botswana. Results Of 50 potential explanatory variables from eight environmental data themes, 42 were significantly associated with malaria prevalence in univariate logistic regression and were ranked by the Akaike Information Criterion. Those correlated with higher-ranking relatives of the same environmental theme, were temporarily excluded. The remaining 14 candidates were ranked by selection frequency after running automated step-wise selection procedures on 1000 bootstrap samples drawn from the data. A non-spatial multiple-variable model was developed through step-wise inclusion in order of selection frequency. Previously excluded variables were then re-evaluated for inclusion, using further step-wise bootstrap procedures, resulting in the exclusion of another variable. Finally a Bayesian geo-statistical model using Markov Chain Monte Carlo simulation was fitted to the data, resulting in a final model of three predictor variables, namely summer rainfall, mean annual temperature and altitude. Each was independently and significantly associated with malaria prevalence after allowing for spatial correlation. This model was used to predict malaria prevalence at unobserved locations, producing a smooth risk map for the whole country. Conclusion We have

  2. A Modeling Procedure by Means of Multicriteria Analysis: Application in the Case of Specific Surface Estimation of Anodized Aluminium

    Science.gov (United States)

    Fotilas, Panayiotis; Batzias, Athanasios F.

    2009-08-01

    A methodological framework designed/developed under the form of an algorithmic procedure (including 20 activity stages and 10 decision nodes) has been applied for multicriteria ranking of models. The criteria used are: fitting to experimental data, agreement with theoretical aspects, model simplicity, experimental falsifiability, progressiveness, and relation to other ISs, as proved by a common path/rationale of deduction. An implementation is presented referring to the selection of pore ideal structure of anodized aluminium among the alternatives: cylindrical (A1), truncated-cone-like (A2), trumpet-like (A3), vesica-like (A4), multiple-base (A5), and tilted-cylinder-like (A6). The alternative A2 (implying corresponding specific surface estimation of the anodic film) was ranked first and the solution was proved to be robust.

  3. Influence of chain ordering on frictional properties of self-assembled monolayers (SAMs) in nano-lubrication.

    Science.gov (United States)

    Cheng, Hefa; Hu, Yuanan

    2012-01-01

    Adhesion of organic films to substrates is important in applications that involve solid surfaces in sliding contact. Although the thickness of self-assembled monolayers (SAMs) is only a few nanometers, they can drastically modify the frictional properties of the underlying substrate, and thus have great potential for serving as boundary lubricants on micro- and nano-scales. This review focuses on the relationship between the structural and compositional properties of SAMs and their frictional response. Adhesion of SAMs to the substrate surface usually occurs through chemisorption of the head groups on the constituent molecules, with molecular interactions such as van der Waals interactions playing important roles in organizing the molecules into surface films, and in controlling their tribological behavior. The durability and wear resistance of SAMs depend on the nature and strength of the binding forces between the head groups and the substrate surfaces, while the adhesion and friction forces are strongly influenced by the interactions of the terminal groups with the counterfaces. Results from both experimental measurements and molecular dynamics simulations consistently indicate that structural ordering of alkyl chains in SAMs reduces their frictional response, and that SAMs formed by molecules with alkyl chains longer than 8 to 10 methylene units are well organized, exhibiting low levels of friction. Less densely packed or more disordered monolayers inherently possess greater numbers of conformational defects at room temperature and present lower barriers to defect creation under the action of a contacting surface, and thus exhibit higher friction. Cross-linking of the spacer chains can reduce the frictional response of disordered films by increasing the chain ordering, but has little impact on SAMs that are already well ordered. On the other hand, introduction of sterically demanding terminal groups and dissimilar molecules reduces molecular ordering in SAMs

  4. Extending simulation modeling to activity-based costing for clinical procedures.

    Science.gov (United States)

    Glick, N D; Blackmore, C C; Zelman, W N

    2000-04-01

    A simulation model was developed to measure costs in an Emergency Department setting for patients presenting with possible cervical-spine injury who needed radiological imaging. Simulation, a tool widely used to account for process variability but typically focused on utilization and throughput analysis, is being introduced here as a realistic means to perform an activity-based-costing (ABC) analysis, because traditional ABC methods have difficulty coping with process variation in healthcare. Though the study model has a very specific application, it can be generalized to other settings simply by changing the input parameters. In essence, simulation was found to be an accurate and viable means to conduct an ABC analysis; in fact, the output provides more complete information than could be achieved through other conventional analyses, which gives management more leverage with which to negotiate contractual reimbursements.

  5. Actor-network Procedures: Modeling Multi-factor Authentication, Device Pairing, Social Interactions

    Science.gov (United States)

    2011-08-29

    network model. The state of a configuration is thus the product of the states of its actors, where some of the actors only task is to store some values...Networks: How Social Production Transforms Markets and Freedom. Yale Univer- sity Press, 2006. [8] Bruno Blanchet. A computationally sound mechanized prover...and Caroline Haythornthwaite. Computer networks as social networks: Collaborative work, telework , and virtual community. Annual Review of Sociology, 22(1):213–238, 1996.

  6. Economics definitions, methods, models, and analysis procedures for Homeland Security applications.

    Energy Technology Data Exchange (ETDEWEB)

    Ehlen, Mark Andrew; Loose, Verne William; Vargas, Vanessa N.; Smith, Braeton J.; Warren, Drake E.; Downes, Paula Sue; Eidson, Eric D.; Mackey, Greg Edward

    2010-01-01

    This report gives an overview of the types of economic methodologies and models used by Sandia economists in their consequence analysis work for the National Infrastructure Simulation & Analysis Center and other DHS programs. It describes the three primary resolutions at which analysis is conducted (microeconomic, mesoeconomic, and macroeconomic), the tools used at these three levels (from data analysis to internally developed and publicly available tools), and how they are used individually and in concert with each other and other infrastructure tools.

  7. MODELING OF A STRUCTURED PLAN OF ACCOUNTS IN PROCEDURES OF INSOLVENCY AND BANKRUPTCY

    Directory of Open Access Journals (Sweden)

    Chalenko R. V.

    2014-02-01

    Full Text Available The article details the problems of constructing a structured plan of accounts in bankruptcy and insolvency proceedings. The proposed model is based on two principal positions, first structured chart of accounts has its own dimension, and secondly, it is built on the principles of architectonics. Architectonics constructing structured chart of accounts allows you to integrate managerial, strategic, transactional accounting and making accounting transparent and efficient

  8. 3D model-based catheter tracking for motion compensation in EP procedures

    Science.gov (United States)

    Brost, Alexander; Liao, Rui; Hornegger, Joachim; Strobel, Norbert

    2010-02-01

    Atrial fibrillation is the most common sustained heart arrhythmia and a leading cause of stroke. Its treatment by radio-frequency catheter ablation, performed using fluoroscopic image guidance, is gaining increasingly more importance. Two-dimensional fluoroscopic navigation can take advantage of overlay images derived from pre-operative 3-D data to add anatomical details otherwise not visible under X-ray. Unfortunately, respiratory motion may impair the utility of these static overlay images for catheter navigation. We developed an approach for image-based 3-D motion compensation as a solution to this problem. A bi-plane C-arm system is used to take X-ray images of a special circumferential mapping catheter from two directions. In the first step of the method, a 3-D model of the device is reconstructed. Three-dimensional respiratory motion at the site of ablation is then estimated by tracking the reconstructed catheter model in 3-D. This step involves bi-plane fluoroscopy and 2-D/3-D registration. Phantom data and clinical data were used to assess our model-based catheter tracking method. Experiments involving a moving heart phantom yielded an average 2-D tracking error of 1.4 mm and an average 3-D tracking error of 1.1 mm. Our evaluation of clinical data sets comprised 469 bi-plane fluoroscopy frames (938 monoplane fluoroscopy frames). We observed an average 2-D tracking error of 1.0 mm +/- 0.4 mm and an average 3-D tracking error of 0.8 mm +/- 0.5 mm. These results demonstrate that model-based motion-compensation based on 2-D/3-D registration is both feasible and accurate.

  9. Developing Historic Building Information Modelling Guidelines and Procedures for Architectural Heritage in Ireland

    Science.gov (United States)

    Murphy, M.; Corns, A.; Cahill, J.; Eliashvili, K.; Chenau, A.; Pybus, C.; Shaw, R.; Devlin, G.; Deevy, A.; Truong-Hong, L.

    2017-08-01

    Cultural heritage researchers have recently begun applying Building Information Modelling (BIM) to historic buildings. The model is comprised of intelligent objects with semantic attributes which represent the elements of a building structure and are organised within a 3D virtual environment. Case studies in Ireland are used to test and develop the suitable systems for (a) data capture/digital surveying/processing (b) developing library of architectural components and (c) mapping these architectural components onto the laser scan or digital survey to relate the intelligent virtual representation of a historic structure (HBIM). While BIM platforms have the potential to create a virtual and intelligent representation of a building, its full exploitation and use is restricted to narrow set of expert users with access to costly hardware, software and skills. The testing of open BIM approaches in particular IFCs and the use of game engine platforms is a fundamental component for developing much wider dissemination. The semantically enriched model can be transferred into a WEB based game engine platform.

  10. Improving financial performance by modeling and analysis of radiology procedure scheduling at a large community hospital.

    Science.gov (United States)

    Lu, Lingbo; Li, Jingshan; Gisler, Paula

    2011-06-01

    Radiology tests, such as MRI, CT-scan, X-ray and ultrasound, are cost intensive and insurance pre-approvals are necessary to get reimbursement. In some cases, tests may be denied for payments by insurance companies due to lack of pre-approvals, inaccurate or missing necessary information. This can lead to substantial revenue losses for the hospital. In this paper, we present a simulation study of a centralized scheduling process for outpatient radiology tests at a large community hospital (Central Baptist Hospital in Lexington, Kentucky). Based on analysis of the central scheduling process, a simulation model of information flow in the process has been developed. Using such a model, the root causes of financial losses associated with errors and omissions in this process were identified and analyzed, and their impacts were quantified. In addition, "what-if" analysis was conducted to identify potential process improvement strategies in the form of recommendations to the hospital leadership. Such a model provides a quantitative tool for continuous improvement and process control in radiology outpatient test scheduling process to reduce financial losses associated with process error. This method of analysis is also applicable to other departments in the hospital.

  11. Loving Sam.

    Science.gov (United States)

    Lasky, Kathryn

    1998-01-01

    Describes how the author came to love Mark Twain's writings, taught "Huckleberry Finn" and other of Twain's writings to a ninth-grade class in a Hasidic Jewish Academy, and learned to really love Samuel Clemens. Describes how this love inspired the author to write two books celebrating what she has valued most in 40 years of reading Mark Twain.…

  12. Local stability conditions and calibrating procedure for new car-following models used in driving simulators

    CERN Document Server

    Kurtc, Valentina

    2015-01-01

    This book continues the biannual series of conference proceedings, which has become a classical reference resource in traffic and granular research alike, and addresses the latest developments at the intersection of physics, engineering and computational science. These involve complex systems, in which multiple simple agents, be they vehicles or particles, give rise to surprising and fascinating phenomena. The contributions collected in these proceedings cover several research fields, all of which deal with transport. Topics include highway, pedestrian and internet traffic; granular matter; biological transport; transport networks; data acquisition; data analysis and technological applications. Different perspectives, i.e., modeling, simulations, experiments, and phenomenological observations are considered.    

  13. Implementation procedure for the generalized moving Preisach model based on a first order reversal curve diagram

    Institute of Scientific and Technical Information of China (English)

    HAN Yong; ZHU Jie

    2009-01-01

    Ftrst order reversal curves (FORC) of nanoeomposite Nd2Fe14B/Fe3B magnetic materials were measured to attain a FORC diagram, which characterizes reversible magnetization, irreversible magnetization, and magnetic interactions in a hysteresis system. Then, generalized mov-ing Preisach model (GMPM) was implemented based on the FORC diagram. Reversible and irreversible magnetizations shown in FORCs and a FORC diagram were used as an input of GMPM. Coupling interaction between reversible and irreversible magnetizations was added when calculating reversible magnetization. Meanwhile, irreversible magnetic moments' interaction was approximately represented by mean field interaction. The result shows that the simulated main curves mostly coincide with the experimental curves.

  14. Ontology aided modeling of organic reaction mechanisms with flexible and fragment based XML markup procedures.

    Science.gov (United States)

    Sankar, Punnaivanam; Aghila, Gnanasekaran

    2007-01-01

    The mechanism models for primary organic reactions encoding the structural fragments undergoing substitution, addition, elimination, and rearrangements are developed. In the proposed models, each and every structural component of mechanistic pathways is represented with flexible and fragment based markup technique in XML syntax. A significant feature of the system is the encoding of the electron movements along with the other components like charges, partial charges, half bonded species, lone pair electrons, free radicals, reaction arrows, etc. needed for a complete representation of reaction mechanism. The rendering of reaction schemes described with the proposed methodology is achieved with a concise XML extension language interoperating with the structure markup. The reaction scheme is visualized as 2D graphics in a browser by converting them into SVG documents enabling the desired layouts normally perceived by the chemists conventionally. An automatic representation of the complex patterns of the reaction mechanism is achieved by reusing the knowledge in chemical ontologies and developing artificial intelligence components in terms of axioms.

  15. Search for nitrates on Mars by the Sample Analysis at Mars (SAM) Instrument

    Science.gov (United States)

    Navarro-Gonzalez, Rafael; Stern, Jennifer; Freissinet, Caroline; Franz, Heather; McKay, Christopher; Coll, Patrice; Sutter, Brad; Archer, Doug; McAdam, Amy; Cabane, Michel; Ming, Douglas; Glavin, Daniel; Eigenbrode, Jennifer; Leshin, Laurie; Wong, Michael; Atreya, Sushil; Wray, James; Steele, Andrew; Buch, Arnaud; Prats, Benito

    2014-05-01

    One of the main goals of the Mars Science Laboratory is to determine whether the planet ever had environmental conditions capable of supporting microbial life. Nitrogen is a fundamental element for life, and is present in structural (e.g., proteins), catalytic (e.g., enzymes and ribozymes), energy transfer (e.g., ATP) and information storage (RNA and DNA) bio-molecules. Planetary models suggest that nitrogen was abundant in the early Martian atmosphere as dinitrogen (N2). However, a fraction of N2 has been lost to space by sputtering and photochemical processes [1, 2], impact erosion [3], and chemical oxidation to nitrates [4, 5]. Nitrates produced early in Mars' history by photochemistry may later decompose back into N2 by the current impact flux [6]. It is estimated that the Martian surface could contain soil nitrates at levels of 0.3 wt.% N, if mixed homogenously [6], or a layer of pure NaNO3 of about 3 m thickness [5] distributed globally. Nitrates are a fundamental source for nitrogen for terrestrial microorganisms. Therefore, the detection of soil nitrates is important to assess habitability in the Martian environment. The only previous attempt to search for soil nitrates was by TEGA and the MECA WCL on the Phoenix mission but no evolved N-containing species were detected [7]. Nitrates have been tentatively identified in two Martian meteorites: Nakhla [8] and EETA79001 [9]. SAM is capable of detecting nitrates by their thermal decomposition into nitric oxide, NO. SAM analyzed samples from Rocknest soil and two drill holes located at John Klein (JK) and Cumberland (CB) mudstones in the Sheepbed member of the Yellowknife Bay formation in Gale Crater. There appear to be several peaks associated with the release of m/z 30 in the temperature range from 150° C to 600° C. m/z 30 can be attributed to nitric oxide; however, other possible chemical interferences may be present and are assessed. The origin of nitric oxide is discussed and its thermal evolution is

  16. Formation and Stability of Phenylphosphonic Acid Monolayers on ZnO: Comparison of In Situ and Ex Situ SAM Preparation.

    Science.gov (United States)

    Ostapenko, Alexandra; Klöffel, Tobias; Meyer, Bernd; Witte, Gregor

    2016-05-24

    Self-assembled monolayers (SAMs) enable an electronic interface tailoring of conductive metal oxides and offer an alternative to common transparent electrodes in optoelectronic devices. Here, the influence of surface orientation and pretreatment on the formation and stability of SAMs has been studied for the case of phenylphosphonic acid (PPA) on ZnO single crystals. Using thermal desorption spectroscopy (TDS), X-ray photoelectron spectroscopy (XPS), near-edge X-ray adsorption fine structure spectroscopy (NEXAFS) and density-functional theory (DFT) calculations, the thermal stability and orientational ordering of PPA-SAMs on the polar and mixed-terminated ZnO surfaces were analyzed. On all surfaces, PPA-SAMs remain stable up to 550 K, while at higher temperatures a C-P bond cleavage and dissociative desorption takes place yielding two distinct desorption peaks. Based on DFT calculations, these desorption channels are attributed to protonated and deprotonated chemisorbed PPA molecules, which can be related to tri- and bidentate species, hence allowing to determine their relative abundance from the intensity ratio. Beside immersion, an alternative monolayer preparation based on vacuum deposition in combination with controlled desorption of excess multilayers is demonstrated. This enables a SAM preparation on bare ZnO surfaces without any precoating due to exposure to ambient air, which is further compared with SAM formation on intentionally hydroxylated substrates. Corresponding TDS data indicate that initial hydroxylation favors the formation of tridentate and deprotonated bidentate, while the OMBD preparation on bare surfaces yields a larger fraction of protonated bidentate species. The orientation of PPA molecules adopted in the SAMs was determined from the dichroism of K-edge NEXAFS measurements and reveals an almost upright orientation for the deprotonated species, while a slight tilting is obtained for monolayer films with a large fraction of protonated

  17. Comparison of SAM and OBIA as Tools for Lava Morphology Classification - A Case Study in Krafla, NE Iceland

    Science.gov (United States)

    Aufaristama, Muhammad; Hölbling, Daniel; Höskuldsson, Ármann; Jónsdóttir, Ingibjörg

    2017-04-01

    The Krafla volcanic system is part of the Icelandic North Volcanic Zone (NVZ). During Holocene, two eruptive events occurred in Krafla, 1724-1729 and 1975-1984. The last eruptive episode (1975-1984), known as the "Krafla Fires", resulted in nine volcanic eruption episodes. The total area covered by the lavas from this eruptive episode is 36 km2 and the volume is about 0.25-0.3 km3. Lava morphology is related to the characteristics of the surface morphology of a lava flow after solidification. The typical morphology of lava can be used as primary basis for the classification of lava flows when rheological properties cannot be directly observed during emplacement, and also for better understanding the behavior of lava flow models. Although mapping of lava flows in the field is relatively accurate such traditional methods are time consuming, especially when the lava covers large areas such as it is the case in Krafla. Semi-automatic mapping methods that make use of satellite remote sensing data allow for an efficient and fast mapping of lava morphology. In this study, two semi-automatic methods for lava morphology classification are presented and compared using Landsat 8 (30 m spatial resolution) and SPOT-5 (10 m spatial resolution) satellite images. For assessing the classification accuracy, the results from semi-automatic mapping were compared to the respective results from visual interpretation. On the one hand, the Spectral Angle Mapper (SAM) classification method was used. With this method an image is classified according to the spectral similarity between the image reflectance spectrums and the reference reflectance spectra. SAM successfully produced detailed lava surface morphology maps. However, the pixel-based approach partly leads to a salt-and-pepper effect. On the other hand, we applied the Random Forest (RF) classification method within an object-based image analysis (OBIA) framework. This statistical classifier uses a randomly selected subset of training

  18. 沉默Sam68基因表达抑制乳腺癌细胞的上皮-间质转化%Sam68 gene-silencing inhibits epithelial-mesenchymal transition of breast cancer cells

    Institute of Scientific and Technical Information of China (English)

    邝紫桥; 章乐虹; 潘小梅; 刘毅俊; 邹颖; 陈欣欣

    2016-01-01

    目的:探讨沉默Sam68 (Src-associated substrated during mitosis of 68KD)基因表达对乳腺癌MDA-MB-231细胞上皮-间质转化(epithelial-mesenchymal transition,EMT)的影响.方法:采用实时荧光定量PCR和蛋白质印迹法检测具有不同侵袭能力的乳腺癌MDA-MB-231和MCF-7细胞中Sam68 mRNA及蛋白的表达情况;选择Sam68高表达的MDA-MB-231细胞,利用siRNA技术沉默细胞中内源性Sam68蛋白的表达.随后,采用实时荧光定量PCR和蛋白质印迹法检测EMT标志物E-钙黏蛋白(E-cadherin)和波形蛋白(vimentin) mRNA及蛋白的表达;采用CCK-8法、Transwell小室迁移和侵袭实验检测沉默Sam68基因表达后对乳腺癌MDA-MB-231细胞增殖,迁移和侵袭的影响.结果:Sam68蛋白在高侵袭性的间质型乳腺癌MDA-MB-231细胞中高表达(P<0.05);采用siRNA沉默MDA-MB-231细胞内源性Sam68蛋白的表达后,E-cadherin的表达水平明显上调(P<0.05),而vimentin的表达水平明显下调(P<0.05);MDA-MB-231细胞的增殖能力以及细胞的迁移和侵袭能力明显降低(P值均< 0.05),细胞可能发生间质-上皮转化.结论:Sam68在高侵袭性乳腺癌细胞中高表达,沉默Sam68基因的表达能抑制EMT的发生,并降低细胞增殖、侵袭和迁移能力.

  19. Moralidade e justiça na historiografia antiga: o 'manual' historiográfico de Luciano de Samósata Morality and justice in ancient history: Luciano de Samósata's "manual" on historiography

    Directory of Open Access Journals (Sweden)

    André Leme Lopes

    2005-01-01

    Full Text Available Como se deve escrever a história, de Luciano de Samósata, é o único tratado da Antigüidade sobre historiografia que chegou até nós. Foi escrito no contexto da produção "histórica" gerada pelas guerras párticas de Lucio Vero (segunda metade do século II d.C.. Para ressaltar a dupla posição política e moral do historiador - que deve, acima de tudo, ser justo -, Luciano critica duramente essas narrativas aduladoras e apresenta Tucídides como o historiador ideal.Luciano de Samosata’s How history should be written is the only known treatise on history from Antiquity. It was written in the context of the "historical" production spawned by Lucio Vero’ Parthian wars (second half of the second century A.D.. To underline the moral and political position of the historian - who must, above all, be just -, Luciano criticizes these flattering narratives and presents Thucydides as the model historian.

  20. Modelling cohesive laws in finite element simulations via an adapted contact procedure in ABAQUS

    DEFF Research Database (Denmark)

    Feih, S.

    2004-01-01

    is not straightforward, and most existing publications consider theoretical and therefore simpler softening shapes. Two possible methods of bridging law approximation areexplained and compared in this report. The bridging laws were implemented in a numerical user subroutine in the finite element code ABAQUS. The main......The influence of different fibre sizings on the strength and fracture toughness of composites was studied by investigating the characteristics of fibre cross-over bridging in DCB specimens loaded with pure bending moments. These tests result in bridginglaws, which are obtained by simultaneous...... measurements of the crack growth resistance and the end opening of the notch. The advantage of this method is that these bridging laws represent material laws independent of the specimen geometry. However, theadaption of the experimentally determined shape to a numerically valid model shape...

  1. A two-way nesting procedure for an ocean model with application to the Norwegian Sea

    Energy Technology Data Exchange (ETDEWEB)

    Heggelund, Yngve; Berntsen, Jarle

    2000-11-01

    Two-way nesting for a {sigma}-coordinate ocean model is implemented. The test case is a traveling low pressure along the west coast of Norway. Different methods for interaction between the coarse grid and the fine grid have been investigated. It is found that both a Dirichlet type and a FRS-type boundary condition for the fine grid give reasonable results for this test case. The FRS-type boundary condition gives a smoother transition between the coarse and fine grid, but more noise in the interior of the fine grid. With no feedback from the fine grid to the coarse grid, phase differences between the solutions on the two grids cause unphysical vortices to be found at the interface between the grids. (author)

  2. Transcranial Magnetic Stimulation: An Automated Procedure to Obtain Coil-specific Models for Field Calculations

    DEFF Research Database (Denmark)

    Madsen, Kristoffer Hougaard; Ewald, Lars; Siebner, Hartwig R.

    2015-01-01

    Background: Field calculations for transcranial magnetic stimulation (TMS) are increasingly implemented online in neuronavigation systems and in more realistic offline approaches based on finite-element methods. They are often based on simplified and/or non-validated models of the magnetic vector...... potential of the TMS coils. Objective: To develop an approach to reconstruct the magnetic vector potential based on automated measurements. Methods: We implemented a setup that simultaneously measures the three components of the magnetic field with high spatial resolution. This is complemented by a novel...... approach to determine the magnetic vector potential via volume integration of the measured field. Results: The integration approach reproduces the vector potential with very good accuracy. The vector potential distribution of a standard figure-of-eight shaped coil determined with our setup corresponds well...

  3. Automated Image-Based Procedures for Accurate Artifacts 3D Modeling and Orthoimage Generation

    Directory of Open Access Journals (Sweden)

    Marc Pierrot-Deseilligny

    2011-12-01

    Full Text Available The accurate 3D documentation of architectures and heritages is getting very common and required in different application contexts. The potentialities of the image-based approach are nowadays very well-known but there is a lack of reliable, precise and flexible solutions, possibly open-source, which could be used for metric and accurate documentation or digital conservation and not only for simple visualization or web-based applications. The article presents a set of photogrammetric tools developed in order to derive accurate 3D point clouds and orthoimages for the digitization of archaeological and architectural objects. The aim is also to distribute free solutions (software, methodologies, guidelines, best practices, etc. based on 3D surveying and modeling experiences, useful in different application contexts (architecture, excavations, museum collections, heritage documentation, etc. and according to several representations needs (2D technical documentation, 3D reconstruction, web visualization, etc..

  4. Design of a global soil moisture initialization procedure for the simple biosphere model

    Science.gov (United States)

    Liston, G. E.; Sud, Y. C.; Walker, G. K.

    1993-01-01

    Global soil moisture and land-surface evapotranspiration fields are computed using an analysis scheme based on the Simple Biosphere (SiB) soil-vegetation-atmosphere interaction model. The scheme is driven with observed precipitation, and potential evapotranspiration, where the potential evapotranspiration is computed following the surface air temperature-potential evapotranspiration regression of Thomthwaite (1948). The observed surface air temperature is corrected to reflect potential (zero soil moisture stress) conditions by letting the ratio of actual transpiration to potential transpiration be a function of normalized difference vegetation index (NDVI). Soil moisture, evapotranspiration, and runoff data are generated on a daily basis for a 10-year period, January 1979 through December 1988, using observed precipitation gridded at a 4 deg by 5 deg resolution.

  5. Changes in expressions of proinflammatory cytokines IL-1beta, TNF-alpha and IL-6 in the brain of senescence accelerated mouse (SAM) P8.

    Science.gov (United States)

    Tha, K K; Okuma, Y; Miyazaki, H; Murayama, T; Uehara, T; Hatakeyama, R; Hayashi, Y; Nomura, Y

    2000-12-01

    The senescence-accelerated mouse (SAM) is known to be a murine model for accelerated aging. The SAMP8 strain shows age-related deterioration of learning and memory at an earlier age than control mice (SAMR1). In the present study, we investigated the changes in expressions of interleukin-1beta (IL-1beta), tumor necrosis factor-alpha (TNF-alpha) and interleukin-6 (IL-6) in the brain of SAMP8. In the hippocampus of 10 months old SAMP8, the expression of IL-1 mRNA was significantly elevated in comparison with that of SAMR1. In both strains of SAMs, increases in IL-1beta protein in the brain were observed at 10 months of age compared with 2 and 5 months. The only differences found between the strain in protein levels were at 10 months and were elevations in IL-1beta in the hippocampus and hypothalamus, and in TNF-alpha and IL-6 in the cerebral cortex and the hippocampus in SAMP8 as compared with SAMR1. However, lipopolysaccharide-induced increases in the expression of these cytokines in brain did not differ between SAMP8 and SAMR1. Increases in expression of proinflammatory cytokines in the brain may be involved in the age-related neural dysfunction and/or learning deficiency in SAMP8.

  6. Roles of SAM and DDHD domains in mammalian intracellular phospholipase A1 KIAA0725p.

    Science.gov (United States)

    Inoue, Hiroki; Baba, Takashi; Sato, Seiichi; Ohtsuki, Ryuya; Takemori, Aya; Watanabe, Takuya; Tagaya, Mitsuo; Tani, Katsuko

    2012-04-01

    Members of the intracellular phospholipase A1 family of proteins have been implicated in organelle biogenesis and membrane trafficking. The mammalian family comprises three members: phosphatidic acid-preferring phospholipase A1 (PA-PIA1)/DDHD1, p125/Sec23ip and KIAA0725p/DDHD2, all of which have a DDHD domain. PA-PLAI is mostly cytosolic, while KIAA0725p and p125 are more stably associated with the Golgi/endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC) and ER exit sites, respectively. Here we show that KIAAO725p and p125 are novel phosphoinositide-binding proteins. Deletion and mutational analyses of KIAAO725p suggested that a sterile alpha-motif (SAM), which is also present inp125, but not in cytosolic PA-PLAI, and the following DDHD domain comprise a minimal region for phosphatidylinositol 4-phosphate (Pl(4)P)-binding. A construct with mutations in the positively charged cluster of the SAM domain is defective in both phosphoinositide-binding and Golgi/ERGIC targeting. Consistent with the view that the Pl(4)P-binding is important for the membrane association of KIAA0725p, expression of phosphoinositide phosphatase Sacd reduces the association of expressed KIAAO725p with membranes. In addition, we show that deletion of the DDHD domain or introduction of point mutations at the conserved aspartate or histidine residues in the domain abolishes the phospholipase activity of KIAAO725p and PA-PLA1. Together, our results suggest that KIAAO725p is targeted to specific organelle membranes in a phosphoinositide-dependent manner, and that its SAM and DDHD domains are essential for its phosphoinositide-binding and phospholipase activity.

  7. Voltammetric Determination of Prochlorperazine and Ethopropazine Using a Gold Electrode Modified with Decanethiol SAM

    Directory of Open Access Journals (Sweden)

    Baizhao Zeng

    2003-12-01

    Full Text Available The voltammetric behavior of prochlorperazine and ethopropazine at a decanethiol (DEC self-assembled monolayer (SAM modified gold electrode (DEC/Au has been studied. It was observed that prochlorperazine exhibited an anodic peak at about 0.60 V (vs SCE, while ethopropazine exhibited two anodic peaks at about 0.49 V and 0.58 V on DEC/Au in pH 10 sodium carbonate buffer. This was due to their different electrochemical oxidation mechanisms. In this case, the oxidation of prochlorperazine and ethopropazine included one 2e step and two 1e steps, respectively. In the presence of some reductants such as ascorbic acid, the oxidation products of them can catalyze the oxidation of the reductants and thus make the peaks grow. In addition, it was found that the SAM structure became not so compact when prochlorperazine and ethopropazine were present, resulting from their permeating in the SAM. Various conditions were optimized for their determination. Under the selected conditions (i.e. 0.080 M pH 10 sodium carbonate buffer; scan rate: 100 mV/s; accumulation potential: –0.4 V or 0 V; accumulation time: 60 s, the peak currents were linear to prochlorperazine concentration in the ranges of 0.1~2.0 μM and 5.0~50 μM, and linear with ethopropazine in the ranges of 10 nM~0.1 μM and 0.5~20 μM. The RSD was 4.28% for 8 successive measurements of 1.0 μM prochlorperazine. The influence of some coexistents was examined.

  8. SAMS--a systems architecture for developing intelligent health information systems.

    Science.gov (United States)

    Yılmaz, Özgün; Erdur, Rıza Cenk; Türksever, Mustafa

    2013-12-01

    In this paper, SAMS, a novel health information system architecture for developing intelligent health information systems is proposed and also some strategies for developing such systems are discussed. The systems fulfilling this architecture will be able to store electronic health records of the patients using OWL ontologies, share patient records among different hospitals and provide physicians expertise to assist them in making decisions. The system is intelligent because it is rule-based, makes use of rule-based reasoning and has the ability to learn and evolve itself. The learning capability is provided by extracting rules from previously given decisions by the physicians and then adding the extracted rules to the system. The proposed system is novel and original in all of these aspects. As a case study, a system is implemented conforming to SAMS architecture for use by dentists in the dental domain. The use of the developed system is described with a scenario. For evaluation, the developed dental information system will be used and tried by a group of dentists. The development of this system proves the applicability of SAMS architecture. By getting decision support from a system derived from this architecture, the cognitive gap between experienced and inexperienced physicians can be compensated. Thus, patient satisfaction can be achieved, inexperienced physicians are supported in decision making and the personnel can improve their knowledge. A physician can diagnose a case, which he/she has never diagnosed before, using this system. With the help of this system, it will be possible to store general domain knowledge in this system and the personnel's need to medical guideline documents will be reduced.

  9. PhnJ – A novel radical SAM enzyme from the C–P lyase complex

    Directory of Open Access Journals (Sweden)

    Siddhesh S. Kamat

    2015-03-01

    Full Text Available PhnJ from the C–P lyase complex catalyzes the cleavage of the carbon–phosphorus bond in ribose-1-phosphonate-5-phosphate (PRPn to produce methane and ribose-1,2-cyclic-phosphate-5-phosphate (PRcP. This protein is a novel radical SAM enzyme that uses glycyl and thiyl radicals as reactive intermediates in the proposed reaction mechanism. The overall reaction is initiated with the reductive cleavage of S-adenosylmethionine (SAM by a reduced [4Fe–4S]1+-cluster to form an Ado-CH2∙ radical intermediate. This intermediate abstracts the proR hydrogen from Gly-32 of PhnJ to form Ado-CH3 and a glycyl radical. In the next step, there is hydrogen atom transfer from Cys-272 to the Gly-32 radical to generate a thiyl radical. The thiyl radical attacks the phosphorus center of the substrate, PRPn, to form a transient thiophosphonate radical intermediate. This intermediate collapses via homolytic C–P bond cleavage and hydrogen atom transfer from the proS hydrogen of Gly-32 to produce a thiophosphate intermediate, methane, and a radical intermediate at Gly-32. The final product, PRcP, is formed by nucleophilic attack of the C2-hydroxyl on the transient thiophosphate intermediate. This reaction regenerates the free thiol group of Cys-272. After hydrogen atom transfer from Cys-272 to the Gly-32 radical, the entire process is repeated with another substrate molecule without the use of another molecule of SAM or involvement from the [4Fe–4S]-cluster again.

  10. Postmodernism and Language in Sam Shepard's True West and Tooth of Crime

    Directory of Open Access Journals (Sweden)

    Bahar Mehrabi

    2012-09-01

    Full Text Available Sam Shepard has gained a reputation as one of America's foremost living playwrights. In over forty plays, Shepard has broken down traditional notions of dramaturgy in combining both modernist notions of the absurd and familiar icons from the American cultural landscape with an energy tinged by anarchy and violence. Moreover, Shepard has been considered by many critics as a postmodern dramatist. Hassan (1987 piles up a lengthy list of artists from various disciplines whose names epitomize postmodernism for him. The playwrights are: Samuel Beckett, Eugene Ionesco, Harold Pinter and only Sam Shepard and August Wilson from America. One characteristic of postmodern literature in general, is a focus on the instability of meaning and the inadequacy of language to completely and accurately represent truth, along with an irony and playfulness in the treatment of linguistic constructs. In other words, there is a questioning of language as a medium of perception and communication. Language can name the pain but it can’t be the pain; language cannot reach the actual individual feeling. Language is not strong enough to convey the intense emotion.  In postmodern poetics, there is a paradigmatic shift from the idea that language is transparent to the disclosure of its physicality, its intimacy, its obdurate persistence, and its paradoxical fragility. Thus, language is an insufficient means for transforming the ideas that exist in one's mind. The aim of the present article would be to present the ways in which the dramatic language of Sam Shepard, as a postmodern drama, demonstrates inadequacy of language in communication. In order to reach this goal, however, a number of his early dramas will be brought under scrutiny with regard to their language and style from the postmodern point of view. Keywords: Fragmentation, Postmodernism, Language, Grand Narratives, American Drama

  11. A Lidar Point Cloud Based Procedure for Vertical Canopy Structure Analysis And 3D Single Tree Modelling in Forest.

    Science.gov (United States)

    Wang, Yunsheng; Weinacker, Holger; Koch, Barbara

    2008-06-12

    A procedure for both vertical canopy structure analysis and 3D single tree modelling based on Lidar point cloud is presented in this paper. The whole area of research is segmented into small study cells by a raster net. For each cell, a normalized point cloud whose point heights represent the absolute heights of the ground objects is generated from the original Lidar raw point cloud. The main tree canopy layers and the height ranges of the layers are detected according to a statistical analysis of the height distribution probability of the normalized raw points. For the 3D modelling of individual trees, individual trees are detected and delineated not only from the top canopy layer but also from the sub canopy layer. The normalized points are resampled into a local voxel space. A series of horizontal 2D projection images at the different height levels are then generated respect to the voxel space. Tree crown regions are detected from the projection images. Individual trees are then extracted by means of a pre-order forest traversal process through all the tree crown regions at the different height levels. Finally, 3D tree crown models of the extracted individual trees are reconstructed. With further analyses on the 3D models of individual tree crowns, important parameters such as crown height range, crown volume and crown contours at the different height levels can be derived.

  12. The Impact of R-Optimized Administration Modeling Procedures on Brazilian Normative Reference Values for Rorschach Scores.

    Science.gov (United States)

    Pianowski, Giselle; Meyer, Gregory J; Villemor-Amaral, Anna Elisa de

    2016-01-01

    To generate normative reference data for the Rorschach Performance Assessment System (R-PAS), modeling procedures were developed to convert the distribution of responses (R) in protocols obtained using Comprehensive System (CS; Exner 2003 ) administration guidelines to match the distribution of R in protocols obtained using R-Optimized Administration (Meyer, Viglione, Mihura, Erard, & Erdberg, 2011 ). This study replicates the R-PAS study, examining the impact of modeling R-Optimized Administration on Brazilian normative reference values by comparing a sample of 746 CS administered protocols to its counterpart sample of 343 records modeled to match R-Optimized Administration. The results were strongly consistent with the R-PAS findings, showing the modeled records had a slightly higher mean R and, secondarily, slightly higher means for Complexity and V-Comp, as well as smaller standard deviations for R, Complexity, and R8910%. We also observed 5 other small differences not observed in the R-PAS study. However, when comparing effect sizes for the differences in means and standard deviations observed in this study to the differences found in the R-PAS study, the results were virtually identical. These findings suggest that using R-Optimized Administration in Brazil might produce normative results that are similar to traditional CS norms for Brazil and similar to the international norms used in R-PAS.

  13. The Physical Models and Statistical Procedures Used in the RACER Monte Carlo Code

    Energy Technology Data Exchange (ETDEWEB)

    Sutton, T.M.; Brown, F.B.; Bischoff, F.G.; MacMillan, D.B.; Ellis, C.L.; Ward, J.T.; Ballinger, C.T.; Kelly, D.J.; Schindler, L.

    1999-07-01

    capability of performing iterated-source (criticality), multiplied-fixed-source, and fixed-source calculations. MCV uses a highly detailed continuous-energy (as opposed to multigroup) representation of neutron histories and cross section data. The spatial modeling is fully three-dimensional (3-D), and any geometrical region that can be described by quadric surfaces may be represented. The primary results are region-wise reaction rates, neutron production rates, slowing-down-densities, fluxes, leakages, and when appropriate the eigenvalue or multiplication factor. Region-wise nuclidic reaction rates are also computed, which may then be used by other modules in the system to determine time-dependent nuclide inventories so that RACER can perform depletion calculations. Furthermore, derived quantities such as ratios and sums of primary quantities and/or other derived quantities may also be calculated. MCV performs statistical analyses on output quantities, computing estimates of the 95% confidence intervals as well as indicators as to the reliability of these estimates. The remainder of this chapter provides an overview of the MCV algorithm. The following three chapters describe the MCV mathematical, physical, and statistical treatments in more detail. Specifically, Chapter 2 discusses topics related to tracking the histories including: geometry modeling, how histories are moved through the geometry, and variance reduction techniques related to the tracking process. Chapter 3 describes the nuclear data and physical models employed by MCV. Chapter 4 discusses the tallies, statistical analyses, and edits. Chapter 5 provides some guidance as to how to run the code, and Chapter 6 is a list of the code input options.

  14. Anodic Behavior of SAM2X5 Material Applied as Amorphous Coatings

    Energy Technology Data Exchange (ETDEWEB)

    Hailey, P D; Farmer, J C; Day, S D; Rebak, R B

    2007-08-10

    Iron-based amorphous alloys are desirable industrial materials since they are highly resistant to corrosion and possess enhanced hardness for wear resistance. The amorphous materials can be produced from the melt as powder and later spray deposited as coatings on large engineering structures. As a laboratory experiment, SAM2X5 powder was coated on electrochemical specimens of 304SS for testing. Results show that the coated specimens did not perform satisfactorily during the laboratory testing. This is because of partial devitrification during the deposition of the powder on the small specimen substrates.

  15. [Research on identification of cabbages and weeds combining spectral imaging technology and SAM taxonomy].

    Science.gov (United States)

    Zu, Qin; Zhang, Shui-fa; Cao, Yang; Zhao, Hui-yi; Dang, Chang-qing

    2015-02-01

    Weeds automatic identification is the key technique and also the bottleneck for implementation of variable spraying and precision pesticide. Therefore, accurate, rapid and non-destructive automatic identification of weeds has become a very important research direction for precision agriculture. Hyperspectral imaging system was used to capture the hyperspectral images of cabbage seedlings and five kinds of weeds such as pigweed, barnyard grass, goosegrass, crabgrass and setaria with the wavelength ranging from 1000 to 2500 nm. In ENVI, by utilizing the MNF rotation to implement the noise reduction and de-correlation of hyperspectral data and reduce the band dimensions from 256 to 11, and extracting the region of interest to get the spectral library as standard spectra, finally, using the SAM taxonomy to identify cabbages and weeds, the classification effect was good when the spectral angle threshold was set as 0. 1 radians. In HSI Analyzer, after selecting the training pixels to obtain the standard spectrum, the SAM taxonomy was used to distinguish weeds from cabbages. Furthermore, in order to measure the recognition accuracy of weeds quantificationally, the statistical data of the weeds and non-weeds were obtained by comparing the SAM classification image with the best classification effects to the manual classification image. The experimental results demonstrated that, when the parameters were set as 5-point smoothing, 0-order derivative and 7-degree spectral angle, the best classification result was acquired and the recognition rate of weeds, non-weeds and overall samples was 80%, 97.3% and 96.8% respectively. The method that combined the spectral imaging technology and the SAM taxonomy together took full advantage of fusion information of spectrum and image. By applying the spatial classification algorithms to establishing training sets for spectral identification, checking the similarity among spectral vectors in the pixel level, integrating the advantages of

  16. Fused Deposition Modeling 3D Printing for (Bio)analytical Device Fabrication: Procedures, Materials, and Applications

    Science.gov (United States)

    2017-01-01

    In this work, the use of fused deposition modeling (FDM) in a (bio)analytical/lab-on-a-chip research laboratory is described. First, the specifications of this 3D printing method that are important for the fabrication of (micro)devices were characterized for a benchtop FDM 3D printer. These include resolution, surface roughness, leakage, transparency, material deformation, and the possibilities for integration of other materials. Next, the autofluorescence, solvent compatibility, and biocompatibility of 12 representative FDM materials were tested and evaluated. Finally, we demonstrate the feasibility of FDM in a number of important applications. In particular, we consider the fabrication of fluidic channels, masters for polymer replication, and tools for the production of paper microfluidic devices. This work thus provides a guideline for (i) the use of FDM technology by addressing its possibilities and current limitations, (ii) material selection for FDM, based on solvent compatibility and biocompatibility, and (iii) application of FDM technology to (bio)analytical research by demonstrating a broad range of illustrative examples. PMID:28628294

  17. Determination of a Differential Item Functioning Procedure Using the Hierarchical Generalized Linear Model

    Directory of Open Access Journals (Sweden)

    Tülin Acar

    2012-01-01

    Full Text Available The aim of this research is to compare the result of the differential item functioning (DIF determining with hierarchical generalized linear model (HGLM technique and the results of the DIF determining with logistic regression (LR and item response theory–likelihood ratio (IRT-LR techniques on the test items. For this reason, first in this research, it is determined whether the students encounter DIF with HGLM, LR, and IRT-LR techniques according to socioeconomic status (SES, in the Turkish, Social Sciences, and Science subtest items of the Secondary School Institutions Examination. When inspecting the correlations among the techniques in terms of determining the items having DIF, it was discovered that there was significant correlation between the results of IRT-LR and LR techniques in all subtests; merely in Science subtest, the results of the correlation between HGLM and IRT-LR techniques were found significant. DIF applications can be made on test items with other DIF analysis techniques that were not taken to the scope of this research. The analysis results, which were determined by using the DIF techniques in different sample sizes, can be compared.

  18. Influence of grain size and exchange interaction on the LLB modeling procedure

    Science.gov (United States)

    Vogler, Christoph; Abert, Claas; Bruckner, Florian; Suess, Dieter; Praetorius, Dirk

    2016-12-01

    Reliably predicting bit-error rates in realistic heat-assisted magnetic recording simulations is a challenging task. Integrating the Landau-Lifshitz-Bloch (LLB) equation, within a coarse graining approach, can reduce the computational effort to determine the magnetization dynamics in the vicinity of the Curie temperature, compared to solving the atomistic Landau-Lifshitz-Gilbert equation. If the aim is that the dynamics of both approaches coincide, temperature dependent material functions, such as the zero-field equilibrium magnetization as well as the parallel and normal susceptibilities, must be modeled carefully in order to use them as input in the LLB equation. We present an extensive study on how these functions depend on grain size and exchange interactions. We show that, if the size or the exchange constant of a reference grain is modified, the material functions can be scaled, according to the changed Curie temperature, yielding negligible errors. This is shown to be valid for volume changes of up to ±40% and variations of the exchange constant of up to ±10%. Besides the temperature dependent material curves, computed switching probabilities also agree well with probabilities separately determined for each system. Our study suggests that there is no need to recalculate the required LLB input functions for each particle. Within the presented limits, it is sufficient to scale them to the Curie temperature of the altered system.

  19. Using Discrete Event Simulation to Model the Economic Value of Shorter Procedure Times on EP Lab Efficiency in the VALUE PVI Study.

    Science.gov (United States)

    Kowalski, Marcin; DeVille, J Brian; Svinarich, J Thomas; Dan, Dan; Wickliffe, Andrew; Kantipudi, Charan; Foell, Jason D; Filardo, Giovanni; Holbrook, Reece; Baker, James; Baydoun, Hassan; Jenkins, Mark; Chang-Sing, Peter

    2016-05-01

    The VALUE PVI study demonstrated that atrial fibrillation (AF) ablation procedures and electrophysiology laboratory (EP lab) occupancy times were reduced for the cryoballoon compared with focal radiofrequency (RF) ablation. However, the economic impact associated with the cryoballoon procedure for hospitals has not been determined. Assess the economic value associated with shorter AF ablation procedure times based on VALUE PVI data. A model was formulated from data from the VALUE PVI study. This model used a discrete event simulation to translate procedural efficiencies into metrics utilized by hospital administrators. A 1000-day period was simulated to determine the accrued impact of procedure time on an institution's EP lab when considering staff and hospital resources. The simulation demonstrated that procedures performed with the cryoballoon catheter resulted in several efficiencies, including: (1) a reduction of 36.2% in days with overtime (422 days RF vs 60 days cryoballoon); (2) 92.7% less cumulative overtime hours (370 hours RF vs 27 hours cryoballoon); and (3) an increase of 46.7% in days with time for an additional EP lab usage (186 days RF vs 653 days cryoballoon). Importantly, the added EP lab utilization could not support the time required for an additional AF ablation procedure. The discrete event simulation of the VALUE PVI data demonstrates the potential positive economic value of AF ablation procedures using the cryoballoon. These benefits include more days where overtime is avoided, fewer cumulative overtime hours, and more days with time left for additional usage of EP lab resources.

  20. Mars Methane Detection and Variability at Gale Crater Measured by the TLS instrument in SAM on the Curiosity Rover

    Science.gov (United States)

    Webster, C. R.; Mahaffy, P. R.; Atreya, S. K.; Flesch, G.

    2015-12-01

    Over the last several years, Earth-based telescopic and Mars orbit remote sensing instruments have reported significant abundances of methane on Mars ranging to tens of parts-per-billion by volume (ppbv). These observations have reported "plumes" or localized patches of methane with variations on timescales much faster than model predictions, leading to speculation of sources from sub-surface methanogen bacteria, geological water-rock reactions, degassing of infalling comets, or UV degradation of micro-meteorites or interplanetary dust. Using the Tunable Laser Spectrometer (TLS) in the Sample Analysis at Mars (SAM) instrument suite on Curiosity, we report in situ detection of methane at background levels of ~0.7 ppbv and also in an episodic release at ten times this value. We will discuss the mechanisms that are believed contributing to these two regimes, report new measurements made since the publication in Science1, and discuss the evidence and implications for seasonal vs. episodic release. Reference 1. "Mars Methane Detection and Variability at Gale Crater", C. R. Webster et al., Science, 347, 415-417 (2015). The research described here was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (NASA).

  1. Analytical solution to the 1D Lemaitre's isotropic damage model and plane stress projected implicit integration procedure

    DEFF Research Database (Denmark)

    Andriollo, Tito; Thorborg, Jesper; Hattel, Jesper Henri

    2016-01-01

    obtaining an integral relationship between total strain and effective stress. By means of the generalized binomial theorem, an expression in terms of infinite series is subsequently derived. The solution is found to simplify considerably existing techniques for material parameters identification based...... on optimization, as all issues associated with classical numerical solution procedures of the constitutive equations are eliminated. In addition, an implicit implementation of the plane stress projected version of Lemaitre's model is discussed, showing that the resulting algebraic system can be reduced...... to a single non-linear equation. The accuracy of the proposed integration scheme is then verified by means of the presented 1D analytical solution. Finally, a closed-form expression for the consistent tangent modulus taking damage evolution into account is given, and its impact on the convergence rate...

  2. Potensi Tinggalan Arkeologis di Kawasan Bandar Udara Sam Ratulangi Manado: Upaya Pelestarian, Pemanfaatan, dan Pengembangan bagi Masyarakat

    Directory of Open Access Journals (Sweden)

    Irfanuddin W. Marzuki

    2016-08-01

    Full Text Available The area of Sam Ratulangi airport’s Manado has archaeological heritage which has been know as it is closed for public. This research used descriptive method, using inductive reasoning. Meanwhile, the analysis method used morphologyl, technology, and contextual analysis. This research aimed to find out the potential of archaeological heritage in Sam Ratulangi airport area of Manado. In addition to its strategy of preservation the haritage included veilbox, bungker, and waruga. The preservation can be conducted by doing protection, development, and utilization. The preservation both physical and non physical protection. The effort for its development and utilization was conducted for the purpose of science, education, culture, and tourism. Kawasan Bandar Udara Sam Ratulangi Manado mempunyai potensi tinggalan arkeologis yang selama ini tidak diketahui masyarakat luas, dikarenakan letak tinggalan yang berada dalam kawasan tertutup untuk umum. Penelitian menggunakan metode deskriptif dengan penalaran induktif. Metode analisis menggunakan analisis morfologi, teknologi dan kontekstual. Tujuan penelitian untuk mengetahui potensi tinggalan arkeologis yang terdapat di kawasan Bandar Udara Sam Ratulangi dan strategi pelestariannya. Tinggalan arkeologis yang terdapat di kawasan Bandar Udara Sam Ratulangi meliputi veilbox, bungker, dan waruga. Upaya pelestarian dapat dilakukan dengan cara perlindungan, pengembangan dan pemanfaatan. Upaya perlindungan meliputi perlindungan secara fisik dan non fisik. Upaya pengembangan dan pemanfaatan dilakukan untuk kepentingan ilmu pengetahuan, pendidikan, kebudayaan dan pariwisata.

  3. Study of the resistance of SAMs on aluminium to acidic and basic solutions using dynamic contact angle measurement.

    Science.gov (United States)

    Liakos, Ioannis L; Newman, Roger C; McAlpine, Eoghan; Alexander, Morgan R

    2007-01-30

    We report the development of a method to determine the aqueous stability of self-assembled monolayers (SAMs) using the Wilhelmy plate dynamic contact angle (DCA) experiment. The DCA is measured in solutions over a range of pH values for alkyl carboxylic and alkyl phosphonic acid SAMs formed on magnetron-sputtered aluminum. The change in DCA on repeated immersion is used as a measure of the degradation of the SAMs by hydrolytic attack. The short and intermediate chain length alkyl acids are not stable in water of neutral pH, whereas molecules with the longest alkyl chains show considerably greater stability in neutral and both high and low pH solutions. The packing density inferred from the DCA and the contact angle hysteresis suggests the C18CO2H monolayer to be slightly less well packed than that of the C18P(=O)(OH)2; this is consistent with related friction force microscopy and infrared reflection absorption spectroscopy findings published elsewhere (Foster, T. T.; Alexander, M. R.; Leggett, G. J.; McAlpine, E. Langmuir 2006, 22, 9254-9259). The resistance of the SAMs to acid and alkaline environments is discussed in the context of aluminum oxide solubility, SAM packing density, and the resistance of the interfacial phosphate and carboxylate functionalities to different aqueous conditions.

  4. Evolved Gas Analyses of the Murray Formation in Gale Crater, Mars: Results of the Curiosity Rover's Sample Analysis at Mars (SAM) Instrument

    Science.gov (United States)

    Sutter, B.; McAdam, A. C.; Rampe, E. B.; Thompson, L. M.; Ming, D. W.; Mahaffy, P. R.; Navarro-Gonzalez, R.; Stern, J. C.; Eigenbrode, J. L.; Archer, P. D.

    2017-01-01

    The Sample Analysis at Mars (SAM) instrument aboard the Mars Science Laboratory rover has analyzed 13 samples from Gale Crater. All SAM-evolved gas analyses have yielded a multitude of volatiles (e.g., H2O, SO2, H2S, CO2, CO, NO, O2, HCl) [1- 6]. The objectives of this work are to 1) Characterize recent evolved SO2, CO2, O2, and NO gas traces of the Murray formation mudstone, 2) Constrain sediment mineralogy/composition based on SAM evolved gas analysis (SAM-EGA), and 3) Discuss the implications of these results relative to understanding the geological history of Gale Crater.

  5. Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria

    DEFF Research Database (Denmark)

    Karminska, K. H.; Purta, E.; Hansen, L .H.

    2010-01-01

    The Cfr methyltransferase confers combined resistance to five classes of antibiotics that bind to the peptidyl tranferase center of bacterial ribosomes by catalyzing methylation of the C-8 position of 23S rRNA nucleotide A2503. The same nucleotide is targeted by the housekeeping methyltransferase...... of a 4Fe-4S cluster, a SAM molecule coordinated to the iron-sulfur cluster (SAM1) and a SAM molecule that is the putative methyl group donor (SAM2). All mutations at predicted functional sites affect Cfr activity significantly as assayed by antibiotic susceptibility testing and primer extension analysis...

  6. Cloning and bioinformatic analysis of SAMS gene in a mangrove tree Sonneratia alba%红树植物杯萼海桑SAMS 基因的克隆与生物信息学分析

    Institute of Scientific and Technical Information of China (English)

    吴秋红; 张自德; 王峰

    2013-01-01

    Sonneratia alba is one of the most salt-tolerant mangroves.S-adenosylmethionine synthetase(SAMS)which was in response to abiotic stresses played an important role in salt tolerance.In order to study the biological mecha-nism of S.alba for adapting stress,the coding region of SaSAMS gene which codes a key enzyme in the S-adenosyl-methionine(SAM)biosynthetic pathway was isolated.Based on the annotation of root transcriptome of S.alba,prim-ers was designed and cDNA of SaSAMS gene was amplified by PCR.The complete coding sequence of SaSAMS gene was 1 182 bp and it encoded a protein of 393 amino acids.Homology comparison and evolutionary tree analysis showed that the SAMS amino acid sequences were relatively conserved in plants.The SaSAMS gene was cloned from a mangrove tree S.alba for the first time and this would facilitate further investigation on molecular mechanism of stress tolerance and regulation networks of stress-related genes in S.alba.%红树植物杯萼海桑是最耐盐的红树植物之一.S-腺苷甲硫氨酸合成酶(S-adenosylmethionine syn-thetase,SAMS)是 S-腺苷甲硫氨酸(S-adenosylmethionine,SAM)生物合成途径的关键酶.SAMS 作为一个逆境胁迫响应蛋白在植物的耐盐调控中发挥着极其重要的作用.本文结合杯萼海桑根的转录组注释,根据编码区序列设计引物,通过PCR克隆杯萼海桑SAMS 基因的编码区 cDNA,并对其进行生物信息分析,为研究杯萼海桑适应逆境的机制奠定理论基础.结果显示PCR扩增了一个长1182 bp 的基因片段,该片段编码由393个氨基酸组成的S-腺苷甲硫氨酸合成酶.同源性比对及进化树分析显示杯萼海桑的SAMS 氨基酸序列进化上相对保守.本研究首次从红树林植物杯萼海桑中克隆S-腺苷甲硫氨酸合成酶基因,并获得其编码区序列,为进一步研究杯萼海桑应对逆境胁迫的分子生物学机制与胁迫相关基因调控网络奠定基础.

  7. Establishing the ferret as a gyrencephalic animal model of traumatic brain injury: Optimization of controlled cortical impact procedures.

    Science.gov (United States)

    Schwerin, Susan C; Hutchinson, Elizabeth B; Radomski, Kryslaine L; Ngalula, Kapinga P; Pierpaoli, Carlo M; Juliano, Sharon L

    2017-06-15

    Although rodent TBI studies provide valuable information regarding the effects of injury and recovery, an animal model with neuroanatomical characteristics closer to humans may provide a more meaningful basis for clinical translation. The ferret has a high white/gray matter ratio, gyrencephalic neocortex, and ventral hippocampal location. Furthermore, ferrets are amenable to behavioral training, have a body size compatible with pre-clinical MRI, and are cost-effective. We optimized the surgical procedure for controlled cortical impact (CCI) using 9 adult male ferrets. We used subject-specific brain/skull morphometric data from anatomical MRIs to overcome across-subject variability for lesion placement. We also reflected the temporalis muscle, closed the craniotomy, and used antibiotics. We then gathered MRI, behavioral, and immunohistochemical data from 6 additional animals using the optimized surgical protocol: 1 control, 3 mild, and 1 severely injured animals (surviving one week) and 1 moderately injured animal surviving sixteen weeks. The optimized surgical protocol resulted in consistent injury placement. Astrocytic reactivity increased with injury severity showing progressively greater numbers of astrocytes within the white matter. The density and morphological changes of microglia amplified with injury severity or time after injury. Motor and cognitive impairments scaled with injury severity. The optimized surgical methods differ from those used in the rodent, and are integral to success using a ferret model. We optimized ferret CCI surgery for consistent injury placement. The ferret is an excellent animal model to investigate pathophysiological and behavioral changes associated with TBI. Published by Elsevier B.V.

  8. Superhydrophobic SAM Modified Electrodes for Enhanced Current Limiting Properties in Intrinsic Conducting Polymer Surge Protection Devices.

    Science.gov (United States)

    Jabarullah, Noor H; Verrelli, Emanuele; Mauldin, Clayton; Navarro, Luis A; Golden, Josh H; Madianos, Leonidas M; Kemp, Neil T

    2015-06-09

    Surface interface engineering using superhydrophobic gold electrodes made with 1-dodecanethiol self-assembled monolayer (SAM) has been used to enhance the current limiting properties of novel surge protection devices based on the intrinsic conducting polymer, polyaniline doped with methanesulfonic acid. The resulting devices show significantly enhanced current limiting characteristics, including current saturation, foldback, and negative differential effects. We show how SAM modification changes the morphology of the polymer film directly adjacent to the electrodes, leading to the formation of an interfacial compact thin film that lowers the contact resistance at the Au-polymer interface. We attribute the enhanced current limiting properties of the devices to a combination of lower contact resistance and increased Joule heating within this interface region which during a current surge produces a current blocking resistive barrier due to a thermally induced dedoping effect caused by the rapid diffusion of moisture away from this region. The effect is exacerbated at higher applied voltages as the higher temperature leads to stronger depletion of charge carriers in this region, resulting in a negative differential resistance effect.

  9. Absence of molecular slip on ultraclean and SAM-coated surfaces

    Science.gov (United States)

    Pye, Justin; Wood, Clay; Burton, Justin

    2016-11-01

    The liquid/solid boundary condition is a complex problem that is becoming increasingly important for the development of nanoscale fluidic devices. Many groups have now measured slip near an interface at nanoscale dimensions using a variety of experimental techniques. In simple systems, large slip lengths are generally measured for non-wetting liquid/solid combinations, but many conflicting measurements and interpretations remain. We have developed a novel pseudo-differential technique using a quartz crystal microbalance (QCM) to measure slip lengths on various surfaces. A drop of one liquid is grown on the QCM in the presence of a second, ambient liquid. We have isolated any anomalous boundary effects such as interfacial slip by choosing two liquids which have identical bulk effects on the QCM frequency and dissipation in the presence of no-slip. Slip lengths are -less than 2 nm- for water (relative to undecane) on all surfaces measured, including plasma cleaned gold, SiO2, and two different self assembled monolayers (SAMs), regardless of contact angle. We also find that surface cleanliness is crucial to accurately measure slip lengths. Additionally, clean glass substrates appear to have a significant adsorbed water layer and SAM surfaces show excess dissipation, possibly associated with contact line motion. In addition to investigating other liquid pairs, future work will include extending this technique to surfaces with independently controllable chemistry and roughness, both of which are known to strongly affect interfacial hydrodynamics.

  10. SAM - Sistema Automatizado del Método MECAP para Especificar Casos de Prueba

    Directory of Open Access Journals (Sweden)

    Kenyer Domínguez

    2010-12-01

    Full Text Available Existen cuatro elementos que son relevantes al momento de definir las pruebas: Confiabilidad, Costo, Tiempo y Calidad. El tiempo de desarrollo y el costo del producto se incrementan cuando se desean pruebas confiables y un software de calidad. Pero ¿qué se puede hacer para que los involucrados comprendan que las pruebas deben ser vistas como una red de seguridad? Si la calidad no se contempla antes de comenzar las pruebas, entonces ella no estará cuando se éstas terminen. El objetivo de este artículo es presentar la herramienta, SAM – Sistema Automatizado del Método MECAP que permite especificar Casos de Prueba a partir de Casos de Uso incorporando elementos que promueven la verificación y validación de la trazabilidad entre la Gestión de Requerimientos, el Análisis y Diseño y las Pruebas. SAM soporta el proceso de pruebas de forma automatizada, mejorando la confiabilidad de las mismas

  11. Wet Chemistry on SAM: How it Helps to Detect Organics on Mars

    Science.gov (United States)

    Buch, Arnaud; Freissinet, Caroline; Szopa, Cyril; Glavin, Danny; Coll, Patrice; Cabane, Michel; Eigenbrode, Jen; Navarro-Gonzalez, Rafael; Stern, Jen; Coscia, David; Teinturier, Samuel; Dworkin, Jason; Mahaffy, Paul; MSL Science Team

    2013-04-01

    For the first time in the history of space exploration, a mission of interest to astrobiology could be able to analyze refractory organic compounds in the soil of Mars with wet chemistry. This analytical technique modifies organic components in such a way that improves their detection, either by releasing the compounds from sample matrices, or by changing the chemical structure to be amenable to analytical conditions. The latter effect is particularly important when polar compounds are present. Sample Analysis at Mars (SAM), on the Curiosity rover of the Mars Science Laboratory mission, onboards two wet chemistry experiments: derivatization [1-2] and thermochemolysis [3-4]. Here we report on the nature of the MTBSTFA derivatization experiment in SAM, the detection of MTBSTFA in the first SAM analyzes, and the implications of this detection. Chemical derivatization of polar molecular compounds is achieved by the MTBSTFA (N-Methyl-N-tert-butyldimethylsilyltrifluoroacetamide) / DMF (Dimethylformamide) silylation reaction in order to transform refractory polar compounds into a more volatile form that can be analyzed and detected by GCMS. The first samples of Martian soil (Rocknest, Gale crater) have been analyzed by evolved gas analysis (EGA) and via GC using thermal conductivity (TCD) and MS detection. The samples have been heated up to approximately 840°C with a heating rate of 35°C/min under He flow. The evolved gas was analyzed directly by the QMS in EGA mode. For GC analyses, the majority of the gas released was trapped on a hydrocarbon trap (silica beads, Tenax TA, Carbosieve G) over a specific temperature range. Trapped volatiles were then released by heating the trap to ~300 °C and sent to the GC under He flow. The first results obtained when running an analysis with an empty cup (no solid sample) showed the presence of MTBSTFA in the system. MTBSTFA was first detected in the EGA-QMS analysis blank then by GC-TCD-QMS analysis. This means that MTBSTFA is part

  12. Impact of Patient and Procedure Mix on Finances of Perinatal Centres - Theoretical Models for Economic Strategies in Perinatal Centres.

    Science.gov (United States)

    Hildebrandt, T; Kraml, F; Wagner, S; Hack, C C; Thiel, F C; Kehl, S; Winkler, M; Frobenius, W; Faschingbauer, F; Beckmann, M W; Lux, M P

    2013-08-01

    they are legally required to offer. Based on our theoretical models it must be stated that spontaneous vaginal births (not caesarean sections) were the most profitable procedures in the current DRG system. Overall, it currently makes economic sense for level I PNCs to treat as many low-risk pregnancies and neonates as possible to cover costs.

  13. Preparation and characterization of BiFeO3 thin films by the LPD on OH-functionalized organic SAMs

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    BiFeO3 (BFO) thin films were grown on OH-functionalized organic self-assembled monolayers (SAMs) via liquid-phase deposition (LPD) method at a temperature below 100°C. The BiFeO3 thin films were induced to synthesize on the OH-functionalized organic OTS monolayers prepared on hydroxylated glass substrate by self-assembling technique. The hydrophilic characteristic of the as-prepared OTS-SAMs was measured by contact angle tester. The crystal phase composition, microstructure and topography of the as-synthesized BFO thin films were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM), energy disperse spectroscopy (EDS) and atomic force microscope (AFM), respectively. Results show that compact and homogeneous BFO thin films can be formed on the OH-functionalized SAMs at low temperature.

  14. Sam68 regulates cell proliferation and cell adhesion-mediated drug resistance (CAM-DR) via the AKT pathway in non-Hodgkin's lymphoma.

    Science.gov (United States)

    Wu, Yaxun; Xu, Xiaohong; Miao, Xiaobing; Zhu, Xinghua; Yin, Haibing; He, Yunhua; Li, Chunsun; Liu, Yushan; Chen, Yali; Lu, Xiaoyun; Wang, Yuchan; He, Song

    2015-12-01

    Sam68 (Src-associated in mitosis 68 kDa), a substrate for tyrosine kinase c-Src during mitosis, is up-regulated in a variety of human cancers and acts oncogenically promoting tumour progression. This study has explored biological function and clinical significance of Sam68 in non-Hodgkin's lymphoma (NHL). To examine Sam68 expression in NHL, clinically, eight diffuse large B-cell lymphomas and four reactive lymphoid hyperplasia fresh-frozen tissues were obtained for western blot and quantitative real-time PCR analyses. Using immunohistochemical staining, paraffin wax embedded sections from 164 cases of NHL patients were used to evaluate prognostic value of Sam68. Cell Counting Kit-8 (CCK-8) and soft agar colony assays were conducted to investigate the role of Sam68 in cell viability and cell proliferation respectively. Furthermore, effects of Sam68 on cell adhesion-mediated drug resistance (CAM-DR) was determined by CCK-8 assay and flow cytometric analysis. Expression status of Sam68 inversely correlated with clinical outcomes of patients with NHL, and it was also an independent prognostic factor for the outcomes. In addition, Sam68 was associated with proliferation of NHL cells. Knock-down of its gene inhibited cell proliferation and colony formation by delaying cell cycle progression. Furthermore, OCI-Ly8 and Jeko-1 cells adhering to FN and HS-5 expressed higher Sam68 protein, compared to their suspension counterparts. Sam68 promoted cell adhesion-mediated drug resistance (CAM-DR) via the AKT pathway. Increased Sam68 expression in NHL resulted in poor prognosis, and it promoted CAM-DR in NHL via AKT. © 2015 John Wiley & Sons Ltd.

  15. Hierarchical Storage Management at the NASA Center for Computational Sciences: From UniTree to SAM-QFS

    Science.gov (United States)

    Salmon, Ellen; Tarshish, Adina; Palm, Nancy; Patel, Sanjay; Saletta, Marty; Vanderlan, Ed; Rouch, Mike; Burns, Lisa; Duffy, Daniel; Caine, Robert

    2004-01-01

    This paper presents the data management issues associated with a large center like the NCCS and how these issues are addressed. More specifically, the focus of this paper is on the recent transition from a legacy UniTree (Legato) system to a SAM-QFS (Sun) system. Therefore, this paper will describe the motivations, from both a hardware and software perspective, for migrating from one system to another. Coupled with the migration from UniTree into SAM-QFS, the complete mass storage environment was upgraded to provide high availability, redundancy, and enhanced performance. This paper will describe the resulting solution and lessons learned throughout the migration process.

  16. Insight into Sam Francis' painting techniques through the analytical study of twenty-eight artworks made between 1946 and 1992

    Science.gov (United States)

    Defeyt, Catherine; Mazurek, Joy; Zebala, Aneta; Burchett-Lere, Debra

    2016-11-01

    The present paper proposes an overview of the painting materials experimented with over the years by Sam Francis, leading figure of the post-World War II American painting, through the analytical study of an extended number of paint samples supplied by the Sam Francis Foundation. In total, 279 samples taken from twenty-eight artworks made between 1946 and 1992, were analyzed by Raman, FTIR and Py-GC/MS techniques. The obtained results revealed the Francis' preference in terms of pigments, i.e., phthalocyanine blues and greens, and outlined unconventional combination of binder media.

  17. System Advisor Model: Flat Plate Photovoltaic Performance Modeling Validation Report

    Energy Technology Data Exchange (ETDEWEB)

    Freeman, J.; Whitmore, J.; Kaffine, L.; Blair, N.; Dobos, A. P.

    2013-12-01

    The System Advisor Model (SAM) is a free software tool that performs detailed analysis of both system performance and system financing for a variety of renewable energy technologies. This report provides detailed validation of the SAM flat plate photovoltaic performance model by comparing SAM-modeled PV system generation data to actual measured production data for nine PV systems ranging from 75 kW to greater than 25 MW in size. The results show strong agreement between SAM predictions and field data, with annualized prediction error below 3% for all fixed tilt cases and below 8% for all one axis tracked cases. The analysis concludes that snow cover and system outages are the primary sources of disagreement, and other deviations resulting from seasonal biases in the irradiation models and one axis tracking issues are discussed in detail.

  18. Actor-Network Procedures

    NARCIS (Netherlands)

    Pavlovic, Dusko; Meadows, Catherine; Ramanujam, R.; Ramaswamy, Srini

    2012-01-01

    In this paper we propose actor-networks as a formal model of computation in heterogenous networks of computers, humans and their devices, where these new procedures run; and we introduce Procedure Derivation Logic (PDL) as a framework for reasoning about security in actor-networks, as an extension

  19. A general procedure to generate models for urban environmental-noise pollution using feature selection and machine learning methods.

    Science.gov (United States)

    Torija, Antonio J; Ruiz, Diego P

    2015-02-01

    The prediction of environmental noise in urban environments requires the solution of a complex and non-linear problem, since there are complex relationships among the multitude of variables involved in the characterization and modelling of environmental noise and environmental-noise magnitudes. Moreover, the inclusion of the great spatial heterogeneity characteristic of urban environments seems to be essential in order to achieve an accurate environmental-noise prediction in cities. This problem is addressed in this paper, where a procedure based on feature-selection techniques and machine-learning regression methods is proposed and applied to this environmental problem. Three machine-learning regression methods, which are considered very robust in solving non-linear problems, are used to estimate the energy-equivalent sound-pressure level descriptor (LAeq). These three methods are: (i) multilayer perceptron (MLP), (ii) sequential minimal optimisation (SMO), and (iii) Gaussian processes for regression (GPR). In addition, because of the high number of input variables involved in environmental-noise modelling and estimation in urban environments, which make LAeq prediction models quite complex and costly in terms of time and resources for application to real situations, three different techniques are used to approach feature selection or data reduction. The feature-selection techniques used are: (i) correlation-based feature-subset selection (CFS), (ii) wrapper for feature-subset selection (WFS), and the data reduction technique is principal-component analysis (PCA). The subsequent analysis leads to a proposal of different schemes, depending on the needs regarding data collection and accuracy. The use of WFS as the feature-selection technique with the implementation of SMO or GPR as regression algorithm provides the best LAeq estimation (R(2)=0.94 and mean absolute error (MAE)=1.14-1.16 dB(A)). Copyright © 2014 Elsevier B.V. All rights reserved.

  20. 17 CFR Appendix to Subpart B of... - Model Forms

    Science.gov (United States)

    2010-04-01

    ...) REGULATIONS S-P AND S-AM Regulation S-AM: Limitations on Affiliate Marketing Pt. 248, Subpt. B, App. Appendix... such as “the group of companies.” 4. Substituting other types of affiliates covered by the notice for... Initial Opt Out Notice (Joint Notice) A-3—Model Form for Renewal Notice (Single-Affiliate Notice)...