WorldWideScience

Sample records for model results suggest

  1. Hypnosis, suggestion, and suggestibility: an integrative model.

    Science.gov (United States)

    Lynn, Steven Jay; Laurence, Jean-Roch; Kirsch, Irving

    2015-01-01

    This article elucidates an integrative model of hypnosis that integrates social, cultural, cognitive, and neurophysiological variables at play both in and out of hypnosis and considers their dynamic interaction as determinants of the multifaceted experience of hypnosis. The roles of these variables are examined in the induction and suggestion stages of hypnosis, including how they are related to the experience of involuntariness, one of the hallmarks of hypnosis. It is suggested that studies of the modification of hypnotic suggestibility; cognitive flexibility; response sets and expectancies; the default-mode network; and the search for the neurophysiological correlates of hypnosis, more broadly, in conjunction with research on social psychological variables, hold much promise to further understanding of hypnosis.

  2. User Modeling for Contextual Suggestion

    Science.gov (United States)

    2014-11-01

    per day without charge. Each Yelp search query can return up to 20 results. The results are in JSON ( JavaScript Object Notation) format and contain...RAMA performance on metric P@5. 4.4.1 Comparison with Average Track Median Table 8 compares the two RAMA runs with the Track Median on all three...whereas RUN1 on MRR shows the least improvement (24%). Figure 6. RAMA performance compared with Track Median by User. 4.4.2 Comparison with Track

  3. Theoretical modeling suggests that synergy may result from combined use of two biocontrol agents for controlling foliar pathogens under spatial heterogeneous conditions.

    Science.gov (United States)

    Xu, X-M; Jeger, M J

    2013-08-01

    There has been a trend for combined use of several biocontrol agents (BCAs) with an expectation of synergistic interactions among BCAs. However, previous modeling studies suggested that, under homogeneous and temporal-fluctuating conditions, combined use of two BCAs, in most cases, only results in efficacies similar to the more efficacious one used alone; a result consistent with published experimental data. The present modeling study investigated whether combined use of two mycoparasitic BCAs, two competitive BCAs, or a mycoparasitic and a competitive BCA leads to synergistic interactions under spatially heterogeneous conditions. In the model, there were two patches with varying relative sizes and two BCAs differentially adapted to the two patches. Within the range of model parameter values considered, combined use of two BCAs is more effective than the more efficacious BCA used alone in 72% of the simulated cases. There was also a considerable proportion (≈21%) of model simulations in which combined use of two BCAs led to synergy (i.e., efficacy was greater than expected under the assumption of Bliss independence, especially when each of the two BCAs can only survive in one [different] patch). Combined use of a mycoparasitic BCA with a competitive one is more likely to result in synergy than the other two BCA combinations. When biocontrol activities of individual BCAs are low or moderate, biocontrol efficacy arising from combined use of two BCAs does not depend greatly on biocontrol mechanisms. However, for high BCA activities, combined use with at least one competitive BCA resulted in better control than combined use of two mycoparasitic BCAs. The present modeling study emphasized the need for understanding the degree of spatial patchiness and quantitative relationships between biocontrol activities and external conditions in order to apply commercial BCAs effectively.

  4. Coupling survey data with drift model results suggests that local spawning is important for Calanus finmarchicus production in the Barents Sea

    Science.gov (United States)

    Kvile, Kristina Øie; Fiksen, Øyvind; Prokopchuk, Irina; Opdal, Anders Frugård

    2017-01-01

    The copepod Calanus finmarchicus is an important part of the diet for several large fish stocks feeding in the Atlantic waters of the Barents Sea. Determining the origin of the new generation copepodites present on the Barents Sea shelf in spring can shed light on the importance of local versus imported production of C. finmarchicus biomass in this region. In this study, we couple large-scale spatiotemporal survey data (> 30 years in both Norwegian Sea and Barents Sea areas) with drift trajectories from a hydrodynamic model to back-calculate and map the spatial distribution of C. finmarchicus from copepod to egg, allowing us to identify potential adult spawning areas. Assuming the adult stage emerges from overwintering in the Norwegian Sea, our results suggest that copepodites sampled at the Barents Sea entrance are a mix of locally spawned individuals and long-distance-travellers advected northwards along the Norwegian shelf edge. However, copepodites sampled farther east in the Barents Sea (33°30‧E) are most likely spawned on the Barents Sea shelf, potentially from females that have overwintered locally. Our results support that C. finmarchicus dynamics in the Barents Sea are not, at least in the short-term, solely driven by advection from the Norwegian Sea, but that local production may be more important than commonly believed.

  5. Simple nonlinear models suggest variable star universality

    CERN Document Server

    Lindner, John F; Kia, Behnam; Hippke, Michael; Learned, John G; Ditto, William L

    2015-01-01

    Dramatically improved data from observatories like the CoRoT and Kepler spacecraft have recently facilitated nonlinear time series analysis and phenomenological modeling of variable stars, including the search for strange (aka fractal) or chaotic dynamics. We recently argued [Lindner et al., Phys. Rev. Lett. 114 (2015) 054101] that the Kepler data includes "golden" stars, whose luminosities vary quasiperiodically with two frequencies nearly in the golden ratio, and whose secondary frequencies exhibit power-law scaling with exponent near -1.5, suggesting strange nonchaotic dynamics and singular spectra. Here we use a series of phenomenological models to make plausible the connection between golden stars and fractal spectra. We thereby suggest that at least some features of variable star dynamics reflect universal nonlinear phenomena common to even simple systems.

  6. Tag Correspondence Model for User Tag Suggestion

    Institute of Scientific and Technical Information of China (English)

    涂存超; 刘知远; 孙茂松

    2015-01-01

    Some microblog services encourage users to annotate themselves with multiple tags, indicating their attributes and interests. User tags play an important role for personalized recommendation and information retrieval. In order to better understand the semantics of user tags, we propose Tag Correspondence Model (TCM) to identify complex correspondences of tags from the rich context of microblog users. The correspondence of a tag is referred to as a unique element in the context which is semantically correlated with this tag. In TCM, we divide the context of a microblog user into various sources (such as short messages, user profile, and neighbors). With a collection of users with annotated tags, TCM can automatically learn the correspondences of user tags from multiple sources. With the learned correspondences, we are able to interpret implicit semantics of tags. Moreover, for the users who have not annotated any tags, TCM can suggest tags according to users’ context information. Extensive experiments on a real-world dataset demonstrate that our method can effciently identify correspondences of tags, which may eventually represent semantic meanings of tags.

  7. Mobbing Experiences of Instructors: Causes, Results, and Solution Suggestions

    Science.gov (United States)

    Celep, Cevat; Konakli, Tugba

    2013-01-01

    In this study, it was aimed to investigate possible mobbing problems in universities, their causes and results, and to attract attention to precautions that can be taken. Phenomenology as one of the qualitative research methods was used in the study. Sample group of the study was selected through the criteria sampling method and eight instructors…

  8. Using suggestion to model different types of automatic writing.

    Science.gov (United States)

    Walsh, E; Mehta, M A; Oakley, D A; Guilmette, D N; Gabay, A; Halligan, P W; Deeley, Q

    2014-05-01

    Our sense of self includes awareness of our thoughts and movements, and our control over them. This feeling can be altered or lost in neuropsychiatric disorders as well as in phenomena such as "automatic writing" whereby writing is attributed to an external source. Here, we employed suggestion in highly hypnotically suggestible participants to model various experiences of automatic writing during a sentence completion task. Results showed that the induction of hypnosis, without additional suggestion, was associated with a small but significant reduction of control, ownership, and awareness for writing. Targeted suggestions produced a double dissociation between thought and movement components of writing, for both feelings of control and ownership, and additionally, reduced awareness of writing. Overall, suggestion produced selective alterations in the control, ownership, and awareness of thought and motor components of writing, thus enabling key aspects of automatic writing, observed across different clinical and cultural settings, to be modelled.

  9. Suggesting a General ESP Model for Adult Learners

    Science.gov (United States)

    Al-Jumaily, Samir

    2011-01-01

    The study suggests a general model that could guarantee the cooperation between teachers and their students to overcome the difficulties encountered in ESP learning. It tries to join together different perspectives in the research of adult education, specifically in the teaching of English for Specific Purposes. It also provides some sort of trust…

  10. Suggesting a General ESP Model for Adult Learners

    Science.gov (United States)

    Al-Jumaily, Samir

    2011-01-01

    The study suggests a general model that could guarantee the cooperation between teachers and their students to overcome the difficulties encountered in ESP learning. It tries to join together different perspectives in the research of adult education, specifically in the teaching of English for Specific Purposes. It also provides some sort of trust…

  11. Modelling of Arabidopsis LAX3 expression suggests auxin homeostasis.

    Science.gov (United States)

    Mellor, Nathan; Péret, Benjamin; Porco, Silvana; Sairanen, Ilkka; Ljung, Karin; Bennett, Malcolm; King, John

    2015-02-07

    Emergence of new lateral roots from within the primary root in Arabidopsis has been shown to be regulated by the phytohormone auxin, via the expression of the auxin influx carrier LAX3, mediated by the ARF7/19 IAA14 signalling module (Swarup et al., 2008). A single cell model of the LAX3 and IAA14 auxin response was formulated and used to demonstrate that hysteresis and bistability may explain the experimentally observed 'all-or-nothing' LAX3 spatial expression pattern in cortical cells containing a gradient of auxin concentrations. The model was tested further by using a parameter fitting algorithm to match model output with qRT-PCR mRNA expression data following exogenous auxin treatment. It was found that the model is able to show good agreement with the data, but only when the exogenous auxin signal is degraded over time, at a rate higher than that measured in the experimental medium, suggesting the triggering of an endogenous auxin homeostasis mechanism. Testing the model over a more physiologically relevant range of extracellular auxin shows bistability and hysteresis still occur when using the optimised parameters, providing the rate of LAX3 active auxin transport is sufficiently high relative to passive diffusion.

  12. Function of Hexagenia (Mayfly) Burrows: Fluid Model Suggests Bacterial Gardening

    Science.gov (United States)

    Traynham, B.; Furbish, D.; Miller, M.; White, D.

    2006-12-01

    Lake and stream bottoms experience an array of physical, chemical, and biological processes that create spatial variations both in the fluid column and in the sediment that provide a physical template for distinct niches. Burrowing insects are major ecological engineers of communities where they structure large areas of the benthic habitat through bioturbation and other activities including respiration, feeding, and defecation. The burrowing mayfly Hexagenia, when present in high densities, has a large impact on food-web dynamics and provides essential ecosystem services within the fluid column and benthic substrate, including sediment mixing, nutrient cycling, and ultimately, energy flow through the freshwater food web. It has long been recognized that particular benthic species are important in linking detrital energy resources to higher trophic levels and for determining how organic matter is processed in freshwater ecosystems; however, the unique contributions made by individual benthic species is largely absent from the literature. Here we present a model that describes the structure and function of a Hexagenia burrow. If testing supports this hypothesis, the model suggests that when high food concentration is available to Hexagenia, there exists a favorable tube length for harvesting bacteria that grow on the burrow walls. The burrow microhabitat created by Hexagenia serves as a case-study in understanding the influence of benthic burrowers on both energy flow through freshwater food webs and nutrient cycling.

  13. Dystechnia: technology deficient model and suggestions for entrepreneurship

    Directory of Open Access Journals (Sweden)

    Romina Farhadi nahad

    2014-05-01

    Full Text Available Lack of interconnection among system components creates a limitation in technology adoption by the reduction or absence of potential users’ perception implying the second-order ignorance state (ignorance of ignorance. Effect of defective or fail in use, extend or logistic technology is dystechnia presenting everywhere and its origin implicitly implies in entrepreneurial opportunity. The identification and exploitation of economic potential by changing the means of economic production and control is called entrepreneurship which strategically allocate economic resource from present approach to innovative one again. Technology Adoption Model is a theoretical construct of the relationship between potential users’ perception and behavioral intentions resulting in actual technology adoption. The attention of Technology Adoption Model is assumes a practical or technological system, perceived usefulness, perceived ease of use determining the intention to use adjusting the actual acceptance respectively. This is the start of entrepreneurial solutions as an option to the dystechnic status upon which Technology Adoption Model is worked. The aim of present study is considering dystechnia phenomenon anticipating Technology Adoption Model as well as entrepreneurial mechanisms which the phenomenon is cured.

  14. Psychiatric vulnerability: suggestions from animal models and role of neurotrophins.

    Science.gov (United States)

    Alleva, Enrico; Francia, Nadia

    2009-04-01

    Nerve growth factor (NGF) and brain-derived neurotrophic factor (BDNF) are well-studied neurotrophins involved in the neurogenesis, differentiation, growth and maintenance of selected peripheral and central populations of neuronal cells during development and at adulthood. Neurotrophins, in concert to hypothalamic-pituitary-adrenal (HPA) axis, play a key role in modulating brain plasticity and behavioral coping, especially during ontogenetic critical periods, when developing brain is particularly sensitive to external stimulations. Indeed, early life events, such psychophysical stress, affect NGF and BDNF levels, and induce dysregulation of the HPA axis. Thus, early life experiences can affect brain development, contributing to shape interindividual differences in vulnerability to stress or psychiatric disorders. At adulthood, intermale aggressive interactions in mice, representing a psychosocial stressful condition, has been shown to markedly alter NGF and BDNF levels both in plasma as well as in selected brain areas, including the hypothalamus and hippocampus. These results have been extended to humans, showing that blood NGF levels are enhanced in psychological contexts mainly associated to anxiety and fear, such as first skydiving experience. Recent studies indicate a role for neurotrophins also in vulnerability and resilience to stress-related neuropsychiatric disorders. Overall, these findings suggest a role of neurotrophins as factors mediating both short- and long-term experience effects on brain structure and function.

  15. Sustainable Competitive Advantage for Educational Institutions: A Suggested Model.

    Science.gov (United States)

    Mazzarol, Tim; Soutar, Geoffrey Norman

    1999-01-01

    Outlines a model of factors critical to establishing and maintaining sustainable competitive advantage for education-services enterprises in international markets. The model, which combines industrial economics, management theory, and services marketing, seeks to explain the strategic decision-making environment in which the education exporter…

  16. Sustainable Competitive Advantage for Educational Institutions: A Suggested Model.

    Science.gov (United States)

    Mazzarol, Tim; Soutar, Geoffrey Norman

    1999-01-01

    Outlines a model of factors critical to establishing and maintaining sustainable competitive advantage for education-services enterprises in international markets. The model, which combines industrial economics, management theory, and services marketing, seeks to explain the strategic decision-making environment in which the education exporter…

  17. Suggesting model fragments for sentences in Dutch laws

    NARCIS (Netherlands)

    E. de Maat; R. Winkels

    2010-01-01

    A main issue in the field of artificial intelligence and law is the translation of source of law that are written in natural language into formal models of law. This article describes a step in that transformation: the creation of models for individual sentences in a source of law. The approach uses

  18. Is working memory working against suggestion susceptibility? Results from extended version of DRM paradigm

    Directory of Open Access Journals (Sweden)

    Maciaszek Patrycja

    2016-04-01

    Full Text Available The paper investigates relationship between working memory efficiency, defined as the result of its’ processing & storage capacity (Oberauer et al., 2003 and the tendency to (1 create assosiative memory distortions (false memories, FM; (2 yield under the influence of external, suggesting factors. Both issues were examined using extended version of Deese-Roediger-McDermott procedure (1959, 1995, modified in order to meet the study demands. Suggestion was contained in an ostentatious feedback information the participants (N=88 received during the DRM procedure. Working memory (WM was measured by standardized tasks (n-back, Jaeggi et al., 2010; automatic-ospan, Unsworth et al., 2005. Study included 3 conditions, differing in the quality of suggestion (positive, negative or neutral. Participants were assigned into 3 groups, depending on results they achieved completing the WM tasks. Obtained results alongside the previously set hypothesis, revealed that (1 WM impacts individuals’ tendency to create false memories in DRM and (2 that the individuals showing higher rates in WM tasks are less willing to yield to suggestion compared to those with lesser ones. It also showed that the greater amount to shift (Gudjonsson, 2003, emerges under the negative suggestion condition (collating positive. Notwithstanding that the interaction effect did not achieve saliency, both analyzed factors (WM and suggesting content are considered as meaningful to explain memory suggestion susceptibility in presented study. Although, obtained results emphasize the crucial role of WM efficiency, that is believed to decide the magnitude of feedback that is influential in every subject. Therefore, issue demands further exploration.

  19. Suggestion Program and Model Installation Program - Duplication of Effort.

    Science.gov (United States)

    1988-04-01

    REPORTNUMBER88-26- TITL SUGESIONPROGAM ND ODE INSALLTIO PRGRAM -DULICTIO OF EFFORT AUTHR(S)MAJR DOALD . TOWBRDGEUSA FACUTY DVISRMAOR SEVE L.HANSN, CSC/824STU...NIP Evaluation Process............................ 13 FIGURE 3--USAF MIP Growth................................... 17 0. p.r vip I -.# EXECUTIVE SUMMARY...the study centers on program processes for submitting and evaluating proposals. The Suggestion Program and MIP processes are similar in that they both

  20. Colorado Model Content Standards for Theatre: Suggested Grade Level Expectations.

    Science.gov (United States)

    Colorado State Dept. of Education, Denver.

    This booklet lists six model content standards in theater arts for elementary and secondary school students in the state of Colorado. The six standards cited in the booklet are: (1) Students develop interpersonal skills and problem-solving capabilities through group interaction and artistic collaboration; (2) Students understand and apply the…

  1. Suggestion of a Management Model: Total Entropy Management

    Directory of Open Access Journals (Sweden)

    Goksel Alpan,

    2011-01-01

    Full Text Available “Entropy” can be defined as the measure of disorder, uncertainty and consumed energy in a system or in the Universe. In the study, entropy concept is used as metaphor and it is aimed to construct the conceptual basis of a new management model which can be utilized to manage all entropy sources effectively. The study is conveyed with a multidisciplinary and holistic approach and by the use of qualitative research techniques. In the study, it is examined the relations of the entropy concept with different disciplines like civilization history, sociology, economy, political sciences, ecology, environmental ethics, classical physics, quantum physics, nanotechnology, genetic science, information theory, network science, system theory, business management etc. and after the evaluation of the findings, it is constructed the conceptual basis of a new management model. At the beginning of the study, entropy concept is defined in detail and related concepts like social entropy, information entropy, negative entropy, heat death, matter chaos, entropic efficiency etc. are explained. Afterwards, important global entropy sources are examined and relations of the concept with actual political, economical, ecological, social and managerial problems and concepts are explained. The main aim of the study is to construct the conceptual basis of a new management model called “Total Entropy Management” which can be applied to governmental organizations, non profit organizations and business enterprises to be able to manage all entropy sources effectively.

  2. MATHEMATICAL MODEL SUGGESTED FOR THE STUDY OF THE KNEE MECHANICS

    Directory of Open Access Journals (Sweden)

    Marius GRĂMADĂ

    2012-07-01

    Full Text Available Knowing the operated the knee biomechanical behavior is important during the life of the endoprosthesis,lifestyle changes and medical rehabilitation. One of the main causes of failure of a primary total prosthetic knee joint isthe instability. From the moment of its implantation, the endoprosthesis is subjected to external forces, which tend todestabilize it, while the muscles and pericapsulare ligaments oppose it. Theoretically there is a relationship between theexternal disturbing force, respectively ligament tension and the knee frontal plane deviation. The purpose of this paperis to test several mathematical models describing the biomechanical behavior of knee ligaments in relation todeviation. On a group of 39 patients we measured the torque of the joint capsule in relation to the deviation using apressure sensor tensor and a torque screwdriver, and we analyzed these data using a statistical program. We havedemonstrated the existence of this relationship as a function of degree 2 and we made predictions based on itcalculating ligament torque and ligament stiffness at 0 and 5 degrees of deviation. The conclusion of this study showsthat there is a strong relationship between ligament torque and deviation knee, which can be described mathematically.This model can be used to study the knee operated and improve the prosthetic devices.

  3. Nucleon resonance electroproduction at high momentum transers: Results from SLAC and suggestions for CEBAF

    Energy Technology Data Exchange (ETDEWEB)

    Keppel, C. [Virginia Union Univ., Richmond, VA (United States)

    1994-04-01

    Nucleon resonance electroproduction results from SLAC Experiment E14OX are presented. A CEBAF facility with doubled energy would enable similar high momentum transfer measurements to be made with greater accuracy. Of particular interest are the Delta P{sub 33}(1232) resonance form factor and R = {sigma}{sub L}/{sigma}{sub T}, the ratio of the longitudinal and transverse components of the cross section. A suggestion is made to study these quantities in conjunction with Bloom-Gilman duality.

  4. A Suggested Model for Building Robust Biomedical Implants Registries.

    Science.gov (United States)

    Aloufi, Bader; Alshagathrah, Fahad; Househ, Mowafa

    2017-01-01

    Registries are an essential source of information for clinical and non-clinical decision-makers; because they provide evidence for post-market clinical follow-up and early detection of safety signals for biomedical implants. Yet, many of todays biomedical implants registries are facing a variety of challenges relating to a poorly designed dataset, the reliability of inputted data and low clinician and patient participation. The purpose of this paper is to present a best practice model for the implementation and use of biomedical implants registries to monitor the safety and effectiveness of implantable medical devices. Based on a literature review and an analysis of multiple national relevant registries, we identified six factors that address contemporary challenges and are believed to be the keys for building a successful biomedical implants registry, which include: sustainable development, international comparability, data reliability, purposeful design, ease of patient participation, and collaborative development at the national level.

  5. In vitro model suggests oxidative stress involved in keratoconus disease

    Science.gov (United States)

    Karamichos, D.; Hutcheon, A. E. K.; Rich, C. B.; Trinkaus-Randall, V.; Asara, J. M.; Zieske, J. D.

    2014-04-01

    Keratoconus (KC) affects 1:2000 people and is a disorder where cornea thins and assumes a conical shape. Advanced KC requires surgery to maintain vision. The role of oxidative stress in KC remains unclear. We aimed to identify oxidative stress levels between human corneal keratocytes (HCKs), fibroblasts (HCFs) and keratoconus cells (HKCs). Cells were cultured in 2D and 3D systems. Vitamin C (VitC) and TGF-β3 (T3) were used for 4 weeks to stimulate self-assembled extracellular matrix (ECM). No T3 used as controls. Samples were analyzed using qRT-PCR and metabolomics. qRT-PCR data showed low levels of collagen I and V, as well as keratocan for HKCs, indicating differentiation to a myofibroblast phenotype. Collagen type III, a marker for fibrosis, was up regulated in HKCs. We robustly detected more than 150 metabolites of the targeted 250 by LC-MS/MS per condition and among those metabolites several were related to oxidative stress. Lactate levels, lactate/malate and lactate/pyruvate ratios were elevated in HKCs, while arginine and glutathione/oxidized glutathione ratio were reduced. Similar patterns found in both 2D and 3D. Our data shows that fibroblasts exhibit enhanced oxidative stress compared to keratocytes. Furthermore the HKC cells exhibit the greatest level suggesting they may have a myofibroblast phenotype.

  6. Testing for variation in taxonomic extinction probabilities: a suggested methodology and some results

    Science.gov (United States)

    Conroy, M.J.; Nichols, J.D.

    1984-01-01

    Several important questions in evolutionary biology and paleobiology involve sources of variation in extinction rates. In all cases of which we are aware, extinction rates have been estimated from data in which the probability that an observation (e.g., a fossil taxon) will occur is related both to extinction rates and to what we term encounter probabilities. Any statistical method for analyzing fossil data should at a minimum permit separate inferences on these two components. We develop a method for estimating taxonomic extinction rates from stratigraphic range data and for testing hypotheses about variability in these rates. We use this method to estimate extinction rates and to test the hypothesis of constant extinction rates for several sets of stratigraphic range data. The results of our tests support the hypothesis that extinction rates varied over the geologic time periods examined. We also present a test that can be used to identify periods of high or low extinction probabilities and provide an example using Phanerozoic invertebrate data. Extinction rates should be analyzed using stochastic models, in which it is recognized that stratigraphic samples are random varlates and that sampling is imperfect

  7. Investigations of aircrews exposure to cosmic radiation - results, conclusions and suggestions

    CERN Document Server

    Bilski, P; Horwacik, T; Marczewska, B; Ochab, E; Olko, P

    2002-01-01

    In frame of a research project undertaken in collaboration with Polish airlines LOT, analysis of aircrews exposure to cosmic radiation has been performed. The applied methods included measurements of radiation doses with thermoluminescent detectors (MTS-N, MCP-N) and track detectors (CR-39) and also calculations of route doses with the CARI computer code. The obtained results indicate that aircrews of nearly all airplanes, with exception of these flying only on ATR aircraft, exceed regularly or may exceed in some conditions, effective doses of 1 mSv. In case of Boeing-767 aircrews such exceeding occurs always, independently of solar activity. Investigations revealed, that during these periods of the solar cycle, when intensity of cosmic radiation is high, exceeding of 6 mSv level is also possible. These results indicate, that according to Polish and European regulations it is necessary for airlines to provide regular estimations of radiation exposure of aircrews. Basing on the obtained results a system for pe...

  8. Great apes can defer exchange: a replication with different results suggesting future oriented behavior.

    Science.gov (United States)

    Osvath, Mathias; Persson, Tomas

    2013-01-01

    The topic of cognitive foresight in non-human animals has received considerable attention in the last decade. The main questions concern whether the animals can prepare for upcoming situations which are, to various degrees, contextually or sensorially detached from the situation in which the preparations are made. Studies on great apes have focused on tool-related tasks, e.g., the ability to select a tool which is functional only in the future. Dufour and Sterck (2008), however, investigated whether chimpanzees were also able to prepare for a future exchange with a human: an object exchanged for a food item. The study included extensive training on the exchangeable item, which is traditionally not compatible with methods for studying planning abilities, as associative learning cannot be precluded. Nevertheless, despite this training, the chimpanzees could not solve the deferred exchange task. Given that great apes can plan for tool use, these results are puzzling. In addition, claims that great ape foresight is highly limited has been based on this study (Suddendorf and Corballis, 2010). Here we partly replicated Dufour and Sterck's study to discern whether temporally deferred and spatially displaced exchange tasks are beyond the capabilities of great apes. In addition to chimpanzees we tested orangutans. One condition followed the one used by Dufour and Sterck, in which the exchange items, functional only in the future, are placed at a location that freely allows for selections by the subjects. In order to test the possibility that the choice set-up could explain the negative results in Dufour and Sterck's study, our second condition followed a method used in the planning study by Osvath and Osvath (2008), where the subjects make a forced one-item-choice from a tray. We found that it is within the capabilities of chimpanzees and orangutans to perform deferred exchange in both conditions.

  9. Great apes can defer exchange: a replication with different results suggesting future oriented behaviour

    Directory of Open Access Journals (Sweden)

    Mathias eOsvath

    2013-10-01

    Full Text Available The topic of cognitive foresight in non-human animals has received considerable attention in the last decade. The main questions concern whether the animals can prepare for upcoming situations which are, to various degrees, contextually or sensorially detached from the situation in which the preparations are made. Studies on great apes have focused on tool-related tasks, e.g. the ability to select a tool which is functional only in the future. Dufour and Sterck (2008, however, investigated whether chimpanzees were also able to prepare for a future exchange with a human: an object exchanged for a food item. The study included extensive training on the exchangeable item, which is traditionally not compatible with methods for studying planning abilities, as associative learning cannot be precluded. Nevertheless, despite this training, the chimpanzees could not solve the deferred exchange task. Given that great apes can plan for tool use, these results are puzzling. In addition, claims that great ape foresight is highly limited has been based on this study (Suddendorf and Corballis, 2010. Here we partly replicated Dufour and Sterck’s study to discern whether temporally deferred and spatially displaced exchange tasks are beyond the capabilities of great apes. In addition to chimpanzees we tested orangutans. One condition followed the one used by Dufour and Sterck, in which the exchange items, functional only in the future, are placed at a location that freely allows for selections by the subjects. In order to test the possibility that the choice set-up could explain the negative results in Dufour and Sterck’s study, our second condition followed a method used in the planning study by Osvath and Osvath (2008, where the subjects make a forced one-item-choice from a tray. We found that it is within the capabilities of chimpanzees and orangutans to perform deferred exchange in both conditions.

  10. Tubulin dipole moment, dielectric constant and quantum behavior: computer simulations, experimental results and suggestions

    CERN Document Server

    Mershin, A; Schüssler, H A; Nanopoulos, Dimitri V; Mershin, Andreas; Kolomenski, Alexandre A.; Schuessler, Hans A.; Nanopoulos, Dimitri V.

    2004-01-01

    We used computer simulation to calculate the electric dipole moments of the alpha and beta tubulin monomers and dimer and found those to be |palpha|=552D, |pbeta|=1193D and |palpha-beta|=1740D respectively. Independent surface plasmon resonance (SPR) and refractometry measurements of the high-frequency dielectric constant and polarizability strongly corroborated our previous SPR-derived results giving delta-n/delta-c ~1.800x10^-3 ml/mg. The refractive index of tubulin was measured to be n_tub ~2.90 and the high frequency tubulin dielectric constant kappa_tub ~8.41 while the high-frequency polarizability was found to be alpha_tub ~ 2.1x10^-33 C m^2/V. Methods for the experimental determination of the low-frequency p are explored as well as ways to test the often conjectured quantum coherence and entanglement properties of tubulin. Biobits, bioqubits and other applications to bioelectronics are discussed.

  11. Models and theories of prescribing decisions: A review and suggested a new model

    Directory of Open Access Journals (Sweden)

    Ali Murshid M

    2017-06-01

    Full Text Available To date, research on the prescribing decisions of physician lacks sound theoretical foundations. In fact, drug prescribing by doctors is a complex phenomenon influenced by various factors. Most of the existing studies in the area of drug prescription explain the process of decision-making by physicians via the exploratory approach rather than theoretical. Therefore, this review is an attempt to suggest a value conceptual model that explains the theoretical linkages existing between marketing efforts, patient and pharmacist and physician decision to prescribe the drugs. The paper follows an inclusive review approach and applies the previous theoretical models of prescribing behaviour to identify the relational factors. More specifically, the report identifies and uses several valuable perspectives such as the ‘persuasion theory - elaboration likelihood model’, the stimuli–response marketing model’, the ‘agency theory’, the theory of planned behaviour,’ and ‘social power theory,’ in developing an innovative conceptual paradigm. Based on the combination of existing methods and previous models, this paper suggests a new conceptual model of the physician decision-making process. This unique model has the potential for use in further research.

  12. Models and theories of prescribing decisions: A review and suggested a new model

    Science.gov (United States)

    Mohaidin, Zurina

    2017-01-01

    To date, research on the prescribing decisions of physician lacks sound theoretical foundations. In fact, drug prescribing by doctors is a complex phenomenon influenced by various factors. Most of the existing studies in the area of drug prescription explain the process of decision-making by physicians via the exploratory approach rather than theoretical. Therefore, this review is an attempt to suggest a value conceptual model that explains the theoretical linkages existing between marketing efforts, patient and pharmacist and physician decision to prescribe the drugs. The paper follows an inclusive review approach and applies the previous theoretical models of prescribing behaviour to identify the relational factors. More specifically, the report identifies and uses several valuable perspectives such as the ‘persuasion theory - elaboration likelihood model’, the stimuli–response marketing model’, the ‘agency theory’, the theory of planned behaviour,’ and ‘social power theory,’ in developing an innovative conceptual paradigm. Based on the combination of existing methods and previous models, this paper suggests a new conceptual model of the physician decision-making process. This unique model has the potential for use in further research. PMID:28690701

  13. Model selection approach suggests causal association between 25-hydroxyvitamin D and colorectal cancer.

    Directory of Open Access Journals (Sweden)

    Lina Zgaga

    Full Text Available Vitamin D deficiency has been associated with increased risk of colorectal cancer (CRC, but causal relationship has not yet been confirmed. We investigate the direction of causation between vitamin D and CRC by extending the conventional approaches to allow pleiotropic relationships and by explicitly modelling unmeasured confounders.Plasma 25-hydroxyvitamin D (25-OHD, genetic variants associated with 25-OHD and CRC, and other relevant information was available for 2645 individuals (1057 CRC cases and 1588 controls and included in the model. We investigate whether 25-OHD is likely to be causally associated with CRC, or vice versa, by selecting the best modelling hypothesis according to Bayesian predictive scores. We examine consistency for a range of prior assumptions.Model comparison showed preference for the causal association between low 25-OHD and CRC over the reverse causal hypothesis. This was confirmed for posterior mean deviances obtained for both models (11.5 natural log units in favour of the causal model, and also for deviance information criteria (DIC computed for a range of prior distributions. Overall, models ignoring hidden confounding or pleiotropy had significantly poorer DIC scores.Results suggest causal association between 25-OHD and colorectal cancer, and support the need for randomised clinical trials for further confirmations.

  14. Suggested Model (Related to the Student Portfolio) Used in Evaluation the Students in University Courses

    Science.gov (United States)

    Mahasneh, Omar M.; Murad, Odeh S.

    2014-01-01

    This study aimed to develop a suggested model related to the student's portfolio used in evaluating the students in the university courses. After revising the theoretical literature and previous studies, two tools of the study have been constructed: Suggested model related to the student portfolio, and identifying the specifications towards using…

  15. Authority Delegation in Boyerahmad Health Centers through Model to Combine Suggestions System and Delphi Method 2012

    Directory of Open Access Journals (Sweden)

    M Momeninezhad

    2013-11-01

    Full Text Available Background & aim: Authority delegation means to transmit part of organization`s manager and leader`s special authorities and executive duties, regardless its root to subordinates and heads of units and related offices to speed up implementing affairs and organizational purposes quickly and on time. The purpose of this study was to inspect authority delegation in health centers of Boyerahmad district through using model to combine suggestions (to identify process and Delphi method (expert`s opinions . Methods: This cross-sectional study was implemented in two stages at first stage, research community was authorities of Boyerahmad health centers (58 persons, their suggestions about requested processes to delegate were gathered by total count through open questionnaires and in second stage, which was Delphi, suggestions gathered from previous stage judged by 30 experts. Data of both stages analyzed by help of Chi-square, correlation coefficient tests. Results: Findings showed that 73.85% of suggestions were able to be delegated, based on expert`s opinion. 40% of suggestions were in domain of official, 36.92% financial and 23.08% hygienic. 88% less than 6 years management background. 20.69% had no academic studies and only 27% were general physicians. Conclusion: By participation of environmental management levels, several processes may be specified and identify cases which are possible to delegate them executively using Delphi (expert`s opinion and this model can be used as a trust worthy method to delegate authority for decentralization. Key words: Participation Management, Health centers, Authority delegation

  16. AStructural Model Suggestion About Relationship Between Total Tourism Affect Perceived By Local Residents And Tourism Support

    OpenAIRE

    Ekrem Cengiz; Fazl› Kirkbir

    2007-01-01

    This study attempts to examine the structural effects of four tourism-impact factors on total impact and on local residents’support for tourism development. For this purpose, a model was developed and was tested with structural equation model. Test the model, 6 hypothesis constitude and a questionnary was conducted from 193 local residents in Bodrum. Structural equation model was applied using AMOS 4 and SPSS 13. After the test, suggested model accomodate intermediate and all hypothesis was...

  17. Atmospheric CO2 observations and models suggest strong carbon uptake by forests in New Zealand

    Science.gov (United States)

    Steinkamp, Kay; Mikaloff Fletcher, Sara E.; Brailsford, Gordon; Smale, Dan; Moore, Stuart; Keller, Elizabeth D.; Baisden, W. Troy; Mukai, Hitoshi; Stephens, Britton B.

    2017-01-01

    A regional atmospheric inversion method has been developed to determine the spatial and temporal distribution of CO2 sinks and sources across New Zealand for 2011-2013. This approach infers net air-sea and air-land CO2 fluxes from measurement records, using back-trajectory simulations from the Numerical Atmospheric dispersion Modelling Environment (NAME) Lagrangian dispersion model, driven by meteorology from the New Zealand Limited Area Model (NZLAM) weather prediction model. The inversion uses in situ measurements from two fixed sites, Baring Head on the southern tip of New Zealand's North Island (41.408° S, 174.871° E) and Lauder from the central South Island (45.038° S, 169.684° E), and ship board data from monthly cruises between Japan, New Zealand, and Australia. A range of scenarios is used to assess the sensitivity of the inversion method to underlying assumptions and to ensure robustness of the results. The results indicate a strong seasonal cycle in terrestrial land fluxes from the South Island of New Zealand, especially in western regions covered by indigenous forest, suggesting higher photosynthetic and respiratory activity than is evident in the current a priori land process model. On the annual scale, the terrestrial biosphere in New Zealand is estimated to be a net CO2 sink, removing 98 (±37) Tg CO2 yr-1 from the atmosphere on average during 2011-2013. This sink is much larger than the reported 27 Tg CO2 yr-1 from the national inventory for the same time period. The difference can be partially reconciled when factors related to forest and agricultural management and exports, fossil fuel emission estimates, hydrologic fluxes, and soil carbon change are considered, but some differences are likely to remain. Baseline uncertainty, model transport uncertainty, and limited sensitivity to the northern half of the North Island are the main contributors to flux uncertainty.

  18. Public Opinion Research as a Basis for Student Learning: A Suggested Teaching Model.

    Science.gov (United States)

    Nickerson, Brian J.

    This paper provides a suggested teaching model enabling students to conduct extensive, hands-on survey research as the basis of part or all of a political science class. The model emphasizes active student learning and development of applied skills. The components of this model can be modified for use in a broad array of undergraduate political…

  19. Modeling of glycerol-3-phosphate transporter suggests a potential 'tilt' mechanism involved in its function.

    Science.gov (United States)

    Tsigelny, Igor F; Greenberg, Jerry; Kouznetsova, Valentina; Nigam, Sanjay K

    2008-10-01

    Many major facilitator superfamily (MFS) transporters have similar 12-transmembrane alpha-helical topologies with two six-helix halves connected by a long loop. In humans, these transporters participate in key physiological processes and are also, as in the case of members of the organic anion transporter (OAT) family, of pharmaceutical interest. Recently, crystal structures of two bacterial representatives of the MFS family--the glycerol-3-phosphate transporter (GlpT) and lac-permease (LacY)--have been solved and, because of assumptions regarding the high structural conservation of this family, there is hope that the results can be applied to mammalian transporters as well. Based on crystallography, it has been suggested that a major conformational "switching" mechanism accounts for ligand transport by MFS proteins. This conformational switch would then allow periodic changes in the overall transporter configuration, resulting in its cyclic opening to the periplasm or cytoplasm. Following this lead, we have modeled a possible "switch" mechanism in GlpT, using the concept of rotation of protein domains as in the DynDom program17 and membranephilic constraints predicted by the MAPAS program.(23) We found that the minima of energies of intersubunit interactions support two alternate positions consistent with their transport properties. Thus, for GlpT, a "tilt" of 9 degrees -10 degrees rotation had the most favorable energetics of electrostatic interaction between the two halves of the transporter; moreover, this confirmation was sufficient to suggest transport of the ligand across the membrane. We conducted steered molecular dynamics simulations of the GlpT-ligand system to explore how glycerol-3-phosphate would be handled by the "tilted" structure, and obtained results generally consistent with experimental mutagenesis data. While biochemical data remain most consistent with a single-site alternating access model, our results raise the possibility that, while the

  20. Is the dissociative adult suggestible? A test of the trauma and fantasy models of dissociation.

    Science.gov (United States)

    Kluemper, Nicole S; Dalenberg, Constance

    2014-01-01

    Psychologists have long assumed a connection between traumatic experience and psychological dissociation. This hypothesis is referred to as the trauma model of dissociation. In the past decade, a series of papers have been published that question this traditional causal link, proposing an alternative fantasy model of dissociation. In the present research, the relationship among dissociation, suggestibility, and fantasy proneness was examined. Suggestibility was measured through the Gudjonsson Scale of Interrogative Suggestibility (GSS) as well as an autobiographically based version of this measure based on the events of September 11, 2001. Consistent with prior research and with the trauma model, dissociation correlated positively with trauma severity (r = .32, p fantasy proneness (r = .60, p fantasy model, dissociation did not correlate with the neutral form of the GSS and correlated negatively (r = -.24, p fantasy model of dissociation.

  1. Mathematical modeling of sustainable synaptogenesis by repetitive stimuli suggests signaling mechanisms in vivo.

    Directory of Open Access Journals (Sweden)

    Hiromu Takizawa

    Full Text Available The mechanisms of long-term synaptic maintenance are a key component to understanding the mechanism of long-term memory. From biological experiments, a hypothesis arose that repetitive stimuli with appropriate intervals are essential to maintain new synapses for periods of longer than a few days. We successfully reproduce the time-course of relative numbers of synapses with our mathematical model in the same conditions as biological experiments, which used Adenosine-3', 5'-cyclic monophosphorothioate, Sp-isomer (Sp-cAMPS as external stimuli. We also reproduce synaptic maintenance responsiveness to intervals of Sp-cAMPS treatment accompanied by PKA activation. The model suggests a possible mechanism of sustainable synaptogenesis which consists of two steps. First, the signal transduction from an external stimulus triggers the synthesis of a new signaling protein. Second, the new signaling protein is required for the next signal transduction with the same stimuli. As a result, the network component is modified from the first network, and a different signal is transferred which triggers the synthesis of another new signaling molecule. We refer to this hypothetical mechanism as network succession. We build our model on the basis of two hypotheses: (1 a multi-step network succession induces downregulation of SSH and COFILIN gene expression, which triggers the production of stable F-actin; (2 the formation of a complex of stable F-actin with Drebrin at PSD is the critical mechanism to achieve long-term synaptic maintenance. Our simulation shows that a three-step network succession is sufficient to reproduce sustainable synapses for a period longer than 14 days. When we change the network structure to a single step network, the model fails to follow the exact condition of repetitive signals to reproduce a sufficient number of synapses. Another advantage of the three-step network succession is that this system indicates a greater tolerance of parameter

  2. A simple neural network model of the hippocampus suggesting its pathfinding role in episodic memory retrieval.

    Science.gov (United States)

    Samsonovich, Alexei V; Ascoli, Giorgio A

    2005-01-01

    The goal of this work is to extend the theoretical understanding of the relationship between hippocampal spatial and memory functions to the level of neurophysiological mechanisms underlying spatial navigation and episodic memory retrieval. The proposed unifying theory describes both phenomena within a unique framework, as based on one and the same pathfinding function of the hippocampus. We propose a mechanism of reconstruction of the context of experience involving a search for a nearly shortest path in the space of remembered contexts. To analyze this concept in detail, we define a simple connectionist model consistent with available rodent and human neurophysiological data. Numerical study of the model begins with the spatial domain as a simple analogy for more complex phenomena. It is demonstrated how a nearly shortest path is quickly found in a familiar environment. We prove numerically that associative learning during sharp waves can account for the necessary properties of hippocampal place cells. Computational study of the model is extended to other cognitive paradigms, with the main focus on episodic memory retrieval. We show that the ability to find a correct path may be vital for successful retrieval. The model robustly exhibits the pathfinding capacity within a wide range of several factors, including its memory load (up to 30,000 abstract contexts), the number of episodes that become associated with potential target contexts, and the level of dynamical noise. We offer several testable critical predictions in both spatial and memory domains to validate the theory. Our results suggest that (1) the pathfinding function of the hippocampus, in addition to its associative and memory indexing functions, may be vital for retrieval of certain episodic memories, and (2) the hippocampal spatial navigation function could be a precursor of its memory function.

  3. Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression.

    Directory of Open Access Journals (Sweden)

    Barbara Dunn

    2013-03-01

    Full Text Available Genome rearrangements are associated with eukaryotic evolutionary processes ranging from tumorigenesis to speciation. Rearrangements are especially common following interspecific hybridization, and some of these could be expected to have strong selective value. To test this expectation we created de novo interspecific yeast hybrids between two diverged but largely syntenic Saccharomyces species, S. cerevisiae and S. uvarum, then experimentally evolved them under continuous ammonium limitation. We discovered that a characteristic interspecific genome rearrangement arose multiple times in independently evolved populations. We uncovered nine different breakpoints, all occurring in a narrow ~1-kb region of chromosome 14, and all producing an "interspecific fusion junction" within the MEP2 gene coding sequence, such that the 5' portion derives from S. cerevisiae and the 3' portion derives from S. uvarum. In most cases the rearrangements altered both chromosomes, resulting in what can be considered to be an introgression of a several-kb region of S. uvarum into an otherwise intact S. cerevisiae chromosome 14, while the homeologous S. uvarum chromosome 14 experienced an interspecific reciprocal translocation at the same breakpoint within MEP2, yielding a chimaeric chromosome; these events result in the presence in the cell of two MEP2 fusion genes having identical breakpoints. Given that MEP2 encodes for a high-affinity ammonium permease, that MEP2 fusion genes arise repeatedly under ammonium-limitation, and that three independent evolved isolates carrying MEP2 fusion genes are each more fit than their common ancestor, the novel MEP2 fusion genes are very likely adaptive under ammonium limitation. Our results suggest that, when homoploid hybrids form, the admixture of two genomes enables swift and otherwise unavailable evolutionary innovations. Furthermore, the architecture of the MEP2 rearrangement suggests a model for rapid introgression, a

  4. Suggestion of a dynamic model of North China basin-range system

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    It is found from preliminary studies that previous basin-range models have difficulties in explaining the formation of the Mesozoic North-China basin-range system. This work suggests a new model-"tectonic thermal erosion" model, which considers the North China basin of Late Mesozoic and its peripheral ranges as a unified system, identifies relationship between upwelling and lateral spreading of the asthenolith with horizontal movement and deformation of the upper crust in the system, clarifies the effects of underplating erosion on the crustal evolution, and tries to establish an earth-dynamic model of the North China Mesozoic basin-range supported by numerical simulation.

  5. Economic Benefit Assignment in Environmental Cost Allocation: Toward a Suggestion Model

    Directory of Open Access Journals (Sweden)

    Collins C. Ngwakwe

    2012-01-01

    Full Text Available This paper aims to suggest a model to reward a ‘dirty product’ whichhas the potential to offer sales promotion services to other ‘clean products’in a multiple product firm. The paper suggests a model – economicbenefit assignment (EBA for apportionment of direct wastecosts where a polluting product offers a sales promotion benefit to other‘clean products’ of the same company, which proposes that benefitingproducts should be assigned a proportion of the direct waste cost ofthe polluting product (as a service charge based on the proportion ofpromotion benefit (sales benefit received from the polluting product.The idea is that, based on transfer pricing theory, such promotion servicewould be paid for, if offered by an outside agent. Whilst academicdebate is expected to ensue from this suggestion model, further caseresearch is imperative to demonstrate industrial applicability.

  6. Mentoring for junior medical faculty: Existing models and suggestions for low-resource settings.

    Science.gov (United States)

    Menon, Vikas; Muraleedharan, Aparna; Bhat, Ballambhattu Vishnu

    2016-02-01

    Globally, there is increasing recognition about the positive benefits and impact of mentoring on faculty retention rates, career satisfaction and scholarly output. However, emphasis on research and practice of mentoring is comparatively meagre in low and middle income countries. In this commentary, we critically examine two existing models of mentorship for medical faculty and offer few suggestions for an integrated hybrid model that can be adapted for use in low resource settings.

  7. Suggestion for a Theoretical Model for Secondary-Tertiary Transition in Mathematics

    Science.gov (United States)

    Clark, Megan; Lovric, Miroslav

    2008-01-01

    One of most notable features of existing body of research in transition seems to be the absence of a theoretical model. The suggestion we present in this paper--to view and understand the high school to university transition in mathematics as a modern-day rite of passage--is an attempt at defining such framework. Although dominantly reflecting…

  8. Vesicular Stomatitis Virus Polymerase's Strong Affinity to Its Template Suggests Exotic Transcription Models

    Science.gov (United States)

    Tang, Xiaolin; Bendjennat, Mourad; Saffarian, Saveez

    2014-01-01

    Vesicular stomatitis virus (VSV) is the prototype for negative sense non segmented (NNS) RNA viruses which include potent human and animal pathogens such as Rabies, Ebola and measles. The polymerases of NNS RNA viruses only initiate transcription at or near the 3′ end of their genome template. We measured the dissociation constant of VSV polymerases from their whole genome template to be 20 pM. Given this low dissociation constant, initiation and sustainability of transcription becomes nontrivial. To explore possible mechanisms, we simulated the first hour of transcription using Monte Carlo methods and show that a one-time initial dissociation of all polymerases during entry is not sufficient to sustain transcription. We further show that efficient transcription requires a sliding mechanism for non-transcribing polymerases and can be realized with different polymerase-polymerase interactions and distinct template topologies. In conclusion, we highlight a model in which collisions between transcribing and sliding non-transcribing polymerases result in release of the non-transcribing polymerases allowing for redistribution of polymerases between separate templates during transcription and suggest specific experiments to further test these mechanisms. PMID:25501005

  9. A trophic model of fringing coral reefs in Nanwan Bay, southern Taiwan suggests overfishing.

    Science.gov (United States)

    Liu, Pi-Jen; Shao, Kwang-Tsao; Jan, Rong-Quen; Fan, Tung-Yung; Wong, Saou-Lien; Hwang, Jiang-Shiou; Chen, Jen-Ping; Chen, Chung-Chi; Lin, Hsing-Juh

    2009-09-01

    Several coral reefs of Nanwan Bay, Taiwan have recently undergone shifts to macroalgal or sea anemone dominance. Thus, a mass-balance trophic model was constructed to analyze the structure and functioning of the food web. The fringing reef model was comprised of 18 compartments, with the highest trophic level of 3.45 for piscivorous fish. Comparative analyses with other reef models demonstrated that Nanwan Bay was similar to reefs with high fishery catches. While coral biomass was not lower, fish biomass was lower than those of reefs with high catches. Consequently, the sums of consumption and respiratory flows and total system throughput were also decreased. The Nanwan Bay model potentially suggests an overfished status in which the mean trophic level of the catch, matter cycling, and trophic transfer efficiency are extremely reduced.

  10. A Study on the Relationship between Organizational Culture and Organizational Performance and a Model Suggestion

    Directory of Open Access Journals (Sweden)

    Ebru Yildiz

    2016-01-01

    Full Text Available Organizational culture is defined as set of goals and values shared by employees in the organization. Recently it has also come to be perceived as a resource of knowledge in the organization. In the literature, along with the studies aiming at identifying the elements of organizational culture, there are some research that study the relationship between organizational culture and performance. This article is a theoretical study of the two concepts and suggests a research model for further research. Recently, knowledge management and innovation strategy have started to be regarded as features of organizational culture. Research shows that these two variables also have significant impacts on organizational performance. Our model suggests measuring the effect of organizational culture on performance along with the supportive impacts of knowledge management and innovation strategy.

  11. Calibration Methods Used in Cancer Simulation Models and Suggested Reporting Guidelines

    Science.gov (United States)

    Stout, Natasha K.; Knudsen, Amy B.; Kong, Chung Yin (Joey); McMahon, Pamela M.; Gazelle, G. Scott

    2009-01-01

    Background Increasingly, computer simulation models are used for economic and policy evaluation in cancer prevention and control. A model’s predictions of key outcomes such as screening effectiveness depends on the values of unobservable natural history parameters. Calibration is the process of determining the values of unobservable parameters by constraining model output to replicate observed data. Because there are many approaches for model calibration and little consensus on best practices, we surveyed the literature to catalogue the use and reporting of these methods in cancer simulation models. Methods We conducted a MEDLINE search (1980 through 2006) for articles on cancer screening models and supplemented search results with articles from our personal reference databases. For each article, two authors independently abstracted pre-determined items using a standard form. Data items included cancer site, model type, methods used for determination of unobservable parameter values, and description of any calibration protocol. All authors reached consensus on items of disagreement. Reviews and non-cancer models were excluded. Articles describing analytical models which estimate parameters with statistical approaches (e.g., maximum likelihood) were catalogued separately. Models that included unobservable parameters were analyzed and classified by whether calibration methods were reported and if so, the methods used. Results The review process yielded 154 articles that met our inclusion criteria and of these, we concluded that 131 may have used calibration methods to determine model parameters. Although the term “calibration” was not always used, descriptions of calibration or “model fitting” were found in 50% (n=66) of the articles with an additional 16% (n=21) providing a reference to methods. Calibration target data were identified in nearly all of these articles. Other methodologic details such as the goodness-of-fit metric were discussed in 54% (n=47

  12. Are reviewers suggested by authors as good as those chosen by editors? Results of a rater-blinded, retrospective study

    Directory of Open Access Journals (Sweden)

    Parkin Emma C

    2006-05-01

    Full Text Available Abstract Background BioMed Central (BMC requires authors to suggest four reviewers when making a submission. Editors searching for reviewers use these suggestions as a source. The review process of the medical journals in the BMC series is open – authors and reviewers know each other's identity – although reviewers can make confidential comments to the editor. Reviews are published alongside accepted articles so readers may see the reviewers' names and recommendations. Our objective was to compare the performance of author-nominated reviewers (ANR with that of editor-chosen reviewers (ECR in terms of review quality and recommendations about submissions in an online-only medical journal. Methods Pairs of reviews from 100 consecutive submissions to medical journals in the BMC series (with one author-nominated and one editor-chosen reviewer and a final decision were assessed by two raters, blinded to reviewer type, using a validated review quality instrument (RQI which rates 7 items on 5-point Likert scales. The raters discussed their ratings after the first 20 pairs (keeping reviewer type masked and resolved major discrepancies in scoring and interpretation to improve inter-rater reliability. Reviewers' recommendations were also compared. Results Reviewer source had no impact on review quality (mean RQI score (± SD 2.24 ± 0.55 for ANR, 2.34 ± 0.54 for ECR or tone (mean scores on additional question 2.72 ANR vs 2.82 ECR (maximum score = 5 in both cases. However author-nominated reviewers were significantly more likely to recommend acceptance (47 vs 35 and less likely to recommend rejection (10 vs 23 than editor-chosen reviewers after initial review (p Conclusion Author-nominated reviewers produced reviews of similar quality to editor-chosen reviewers but were more likely to recommend acceptance during the initial stages of peer review.

  13. Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes.

    Directory of Open Access Journals (Sweden)

    Rohini Garg

    Full Text Available DNA methylation plays a crucial role in development through inheritable gene silencing. Plants possess three types of DNA methyltransferases (MTases, namely Methyltransferase (MET, Chromomethylase (CMT and Domains Rearranged Methyltransferase (DRM, which maintain methylation at CG, CHG and CHH sites. DNA MTases have not been studied in legumes so far. Here, we report the identification and analysis of putative DNA MTases in five legumes, including chickpea, soybean, pigeonpea, Medicago and Lotus. MTases in legumes could be classified in known MET, CMT, DRM and DNA nucleotide methyltransferases (DNMT2 subfamilies based on their domain organization. First three MTases represent DNA MTases, whereas DNMT2 represents a transfer RNA (tRNA MTase. Structural comparison of all the MTases in plants with known MTases in mammalian and plant systems have been reported to assign structural features in context of biological functions of these proteins. The structure analysis clearly specified regions crucial for protein-protein interactions and regions important for nucleosome binding in various domains of CMT and MET proteins. In addition, structural model of DRM suggested that circular permutation of motifs does not have any effect on overall structure of DNA methyltransferase domain. These results provide valuable insights into role of various domains in molecular recognition and should facilitate mechanistic understanding of their function in mediating specific methylation patterns. Further, the comprehensive gene expression analyses of MTases in legumes provided evidence of their role in various developmental processes throughout the plant life cycle and response to various abiotic stresses. Overall, our study will be very helpful in establishing the specific functions of DNA MTases in legumes.

  14. Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes.

    Science.gov (United States)

    Garg, Rohini; Kumari, Romika; Tiwari, Sneha; Goyal, Shweta

    2014-01-01

    DNA methylation plays a crucial role in development through inheritable gene silencing. Plants possess three types of DNA methyltransferases (MTases), namely Methyltransferase (MET), Chromomethylase (CMT) and Domains Rearranged Methyltransferase (DRM), which maintain methylation at CG, CHG and CHH sites. DNA MTases have not been studied in legumes so far. Here, we report the identification and analysis of putative DNA MTases in five legumes, including chickpea, soybean, pigeonpea, Medicago and Lotus. MTases in legumes could be classified in known MET, CMT, DRM and DNA nucleotide methyltransferases (DNMT2) subfamilies based on their domain organization. First three MTases represent DNA MTases, whereas DNMT2 represents a transfer RNA (tRNA) MTase. Structural comparison of all the MTases in plants with known MTases in mammalian and plant systems have been reported to assign structural features in context of biological functions of these proteins. The structure analysis clearly specified regions crucial for protein-protein interactions and regions important for nucleosome binding in various domains of CMT and MET proteins. In addition, structural model of DRM suggested that circular permutation of motifs does not have any effect on overall structure of DNA methyltransferase domain. These results provide valuable insights into role of various domains in molecular recognition and should facilitate mechanistic understanding of their function in mediating specific methylation patterns. Further, the comprehensive gene expression analyses of MTases in legumes provided evidence of their role in various developmental processes throughout the plant life cycle and response to various abiotic stresses. Overall, our study will be very helpful in establishing the specific functions of DNA MTases in legumes.

  15. The Danish national passenger modelModel specification and results

    DEFF Research Database (Denmark)

    Rich, Jeppe; Hansen, Christian Overgaard

    2016-01-01

    The paper describes the structure of the new Danish National Passenger model and provides on this basis a general discussion of large-scale model design, cost-damping and model validation. The paper aims at providing three main contributions to the existing literature. Firstly, at the general level......, the paper provides a description of a large-scale forecast model with a discussion of the linkage between population synthesis, demand and assignment. Secondly, the paper gives specific attention to model specification and in particular choice of functional form and cost-damping. Specifically we suggest...... a family of logarithmic spline functions and illustrate how it is applied in the model. Thirdly and finally, we evaluate model sensitivity and performance by evaluating the distance distribution and elasticities. In the paper we present results where the spline-function is compared with more traditional...

  16. A computational model of the LGI1 protein suggests a common binding site for ADAM proteins.

    Directory of Open Access Journals (Sweden)

    Emanuela Leonardi

    Full Text Available Mutations of human leucine-rich glioma inactivated (LGI1 gene encoding the epitempin protein cause autosomal dominant temporal lateral epilepsy (ADTLE, a rare familial partial epileptic syndrome. The LGI1 gene seems to have a role on the transmission of neuronal messages but the exact molecular mechanism remains unclear. In contrast to other genes involved in epileptic disorders, epitempin shows no homology with known ion channel genes but contains two domains, composed of repeated structural units, known to mediate protein-protein interactions.A three dimensional in silico model of the two epitempin domains was built to predict the structure-function relationship and propose a functional model integrating previous experimental findings. Conserved and electrostatic charged regions of the model surface suggest a possible arrangement between the two domains and identifies a possible ADAM protein binding site in the β-propeller domain and another protein binding site in the leucine-rich repeat domain. The functional model indicates that epitempin could mediate the interaction between proteins localized to different synaptic sides in a static way, by forming a dimer, or in a dynamic way, by binding proteins at different times.The model was also used to predict effects of known disease-causing missense mutations. Most of the variants are predicted to alter protein folding while several other map to functional surface regions. In agreement with experimental evidence, this suggests that non-secreted LGI1 mutants could be retained within the cell by quality control mechanisms or by altering interactions required for the secretion process.

  17. Suggestion for a theoretical model for secondary-tertiary transition in mathematics

    Science.gov (United States)

    Clark, Megan; Lovric, Miroslav

    2008-09-01

    One of most notable features of existing body of research in transition seems to be the absence of a theoretical model. The suggestion we present in this paper—to view and understand the high school to university transition in mathematics as a modern-day rite of passage—is an attempt at defining such framework. Although dominantly reflecting North-American reality, we believe that the model could be found useful in other countries as well. Let us emphasize that our model is not new in the sense that it recognizes the transition as such. In this paper, we try to determine whether (and, if so, how) the notion of a rite of passage—which is a well-understood concept in anthropology, as well as in some other disciplines (e.g. culture shock in cultural studies)—can help us understand mathematics transition issues better. Can it help us systematize existing body of research, and enhance our understanding of transition in mathematics; does it point at something new? We believe so, and by elaborating some traditional aspects of rites of passage, we hope to provide a useful lens through which we can examine the process of transition in mathematics, and make suggestions for improved management of some transitional issues.

  18. Using hypnotic suggestion to model loss of control and awareness of movements: an exploratory FMRI study.

    Directory of Open Access Journals (Sweden)

    Quinton Deeley

    Full Text Available The feeling of voluntary control and awareness of movement is fundamental to our notions of selfhood and responsibility for actions, yet can be lost in neuropsychiatric syndromes (e.g. delusions of control, non-epileptic seizures and culturally influenced dissociative states (e.g. attributions of spirit possession. The brain processes involved remain poorly understood. We used suggestion and functional magnetic resonance imaging (fMRI to investigate loss of control and awareness of right hand movements in 15 highly hypnotically suggestible subjects. Loss of perceived control of movements was associated with reduced connectivity between supplementary motor area (SMA and motor regions. Reduced awareness of involuntary movements was associated with less activation in parietal cortices (BA 7, BA 40 and insula. Collectively these results suggest that the sense of voluntary control of movement may critically depend on the functional coupling of SMA with motor systems, and provide a potential neural basis for the narrowing of awareness reported in pathological and culturally influenced dissociative phenomena.

  19. Dynamic computational model suggests that cellular citizenship is fundamental for selective tumor apoptosis.

    Directory of Open Access Journals (Sweden)

    Megan Olsen

    Full Text Available Computational models in the field of cancer research have focused primarily on estimates of biological events based on laboratory generated data. We introduce a novel in-silico technology that takes us to the next level of prediction models and facilitates innovative solutions through the mathematical system. The model's building blocks are cells defined phenotypically as normal or tumor, with biological processes translated into equations describing the life protocols of the cells in a quantitative and stochastic manner. The essentials of communication in a society composed of normal and tumor cells are explored to reveal "protocols" for selective tumor eradication. Results consistently identify "citizenship properties" among cells that are essential for the induction of healing processes in a healthy system invaded by cancer. These properties act via inter-cellular communication protocols that can be optimized to induce tumor eradication along with system recovery. Within the computational systems, the protocols universally succeed in removing a wide variety of tumors defined by proliferation rates, initial volumes, and apoptosis resistant phenotypes; they show high adaptability for biological details and allow incorporation of population heterogeneity. These protocols work as long as at least 32% of cells obey extra-cellular commands and at least 28% of cancer cells report their deaths. This low percentage implies that the protocols are resilient to the suboptimal situations often seen in biological systems. We conclude that our in-silico model is a powerful tool to investigate, to propose, and to exercise logical anti-cancer solutions. Functional results should be confirmed in a biological system and molecular findings should be loaded into the computational model for the next level of directed experiments.

  20. A suggested computer-based model for using Nasreddin Hodja’s anecdotes in preschool education

    Directory of Open Access Journals (Sweden)

    Abdulkadir Kabadayı

    2005-12-01

    Full Text Available Researchers have been manipulating the technology in education as well as in other fields and investigating the most effective ways of using it in the classroom. Therefore, they try to present any material which has an affect on the learners’ development, by integrating technological devices in the classroom atmosphere. Being aware of the fact that 70 percent of the children’s mental, language and cognitive domains have developed during preschool education, pedagogues are quite sensitive to preschool education and are in search for taking necessary precautions to enable them cognitive, psycho-motor and affective domains in the community. It is clear that preschool children are quite interested in the cartoons and motivated to perceive the world via cartoons on TV. Taking the point into consideration, in this article, a technology-based model is suggested by explaining the methods and techniques of use of the Nasreddin Hodja’s anecdotes as educational equipments in virtual atmosphere. In this model, it is explained how the Nasreddin Hodja’s anecdotes will develop students’ cognitive, affective and psycho-motor domains effectively displaying grade by grade illustration.

  1. A suggested computer-based model for using Nasreddin Hodja’s anecdotes in preschool education

    Directory of Open Access Journals (Sweden)

    Abdulkadir Kabadayı

    2006-08-01

    Full Text Available Researchers have been manipulating the technology in education as well as in other fields and investigating the most effective ways of using it in the classroom. Therefore, they try to present any material which has an affect on the learners’ development, by integrating technological devices in the classroom atmosphere. Being aware of the fact that 70 percent of the children’s mental, language and cognitive domains have developed during preschool education, pedagogues are quite sensitive to preschool education and are in search for taking necessary precautions to enable them cognitive, psycho-motor and affective domains in the community. It is clear that preschool children are quite interested in the cartoons and motivated to perceive the world via cartoons on TV. Taking the point into consideration, in this article, a technology-based model is suggested by explaining the methods and techniques of use of the Nasreddin Hodja’s anecdotes as educational equipments in virtual atmosphere. In this model, it is explained how the Nasreddin Hodja’s anecdotes will develop students’ cognitive, affective and psycho-motor domains effectively displaying grade by grade illustration.

  2. A cervid vocal fold model suggests greater glottal efficiency in calling at high frequencies.

    Directory of Open Access Journals (Sweden)

    Ingo R Titze

    Full Text Available Male Rocky Mountain elk (Cervus elaphus nelsoni produce loud and high fundamental frequency bugles during the mating season, in contrast to the male European Red Deer (Cervus elaphus scoticus who produces loud and low fundamental frequency roaring calls. A critical step in understanding vocal communication is to relate sound complexity to anatomy and physiology in a causal manner. Experimentation at the sound source, often difficult in vivo in mammals, is simulated here by a finite element model of the larynx and a wave propagation model of the vocal tract, both based on the morphology and biomechanics of the elk. The model can produce a wide range of fundamental frequencies. Low fundamental frequencies require low vocal fold strain, but large lung pressure and large glottal flow if sound intensity level is to exceed 70 dB at 10 m distance. A high-frequency bugle requires both large muscular effort (to strain the vocal ligament and high lung pressure (to overcome phonation threshold pressure, but at least 10 dB more intensity level can be achieved. Glottal efficiency, the ration of radiated sound power to aerodynamic power at the glottis, is higher in elk, suggesting an advantage of high-pitched signaling. This advantage is based on two aspects; first, the lower airflow required for aerodynamic power and, second, an acoustic radiation advantage at higher frequencies. Both signal types are used by the respective males during the mating season and probably serve as honest signals. The two signal types relate differently to physical qualities of the sender. The low-frequency sound (Red Deer call relates to overall body size via a strong relationship between acoustic parameters and the size of vocal organs and body size. The high-frequency bugle may signal muscular strength and endurance, via a 'vocalizing at the edge' mechanism, for which efficiency is critical.

  3. Experimental data suggesting that inflammation mediated rat liver mitochondrial dysfunction results from secondary hypoxia rather than from direct effects of inflammatory mediators

    Directory of Open Access Journals (Sweden)

    Adelheid eWeidinger

    2013-06-01

    Full Text Available Systemic inflammatory response (SIR comprises direct effects of inflammatory mediators (IM and indirect effects, such as secondary circulatory failure which results in tissue hypoxia (HOX. These two key components, SIR and HOX, cause multiple organ failure (MOF. Since HOX and IM occur and interact simultaneously in vivo, it is difficult to clarify their individual pathological impact. To eliminate this interaction, precision cut liver slices (PCLS were used in this study aiming to dissect the effects of HOX and IM on mitochondrial function, integrity of cellular membrane and the expression of genes associated with inflammation. HOX was induced by incubating PCLS or rat liver mitochondria at pO2<1% followed by reoxygenation (HOX/ROX model. Inflammatory injury was stimulated by incubating PCLS with IM (IM model. We found upregulation of inducible nitric oxide synthase (iNOS expression only in the IM model, while heme oxygenase 1 (HO-1 expression was upregulated only in the HOX/ROX model. Elevated expression of interleukin 6 (IL-6 was found in both models reflecting converging pathways regulating the expression of this gene. Both models caused damage to hepatocytes resulting in the release of alanine aminotransferase (ALT. The leakage of aspartate aminotransferase (AST was observed only during the hypoxic phase in the HOX/ROX model. The reoxygenation phase of HOX, but not IM, drastically impaired mitochondrial electron supply via complex I and II. Additional experiments performed with isolated mitochondria showed that free iron, released during HOX, is likely a key prerequisite of mitochondrial dysfunction induced during the reoxygenation phase. Our data suggests that mitochondrial dysfunction, previously observed in in vivo SIR-models is the result of secondary circulatory failure inducing HOX rather than the result of a direct interaction of IM with liver cells.

  4. Some seismologieal results and geostructural suggestions from a study of the Reggio Calabria earthquake of 16 January, 1975

    Directory of Open Access Journals (Sweden)

    E. L o GIUDICE

    1975-05-01

    Full Text Available Starting from the analytic determination of the most important parameters of the Reggio Calabria earthquake, several geostructural hypotheses are analyzed and discussed. The statistical hvpocentre, calculated in two separate phases for (lie epicentral coordinates (q> = 38°04'28"; A = 15°38'55" and for the depth (h = 10.04 km, is consistent with an earlier macroseismic estimation. The travel times for the first arrivals, limited to the distance interval 0 ^ ¿1° ^ 12 can be approximated by means of the three linear equations: which can be interpreted as the travel-time curves of the direct (Pg and refracted (Pn i , P„2 longitudinal waves. The existence of a focal mechanism, compatible with a couple + oppositely directed force model is deduced from a study of the signs of the first impulses. This model includes faulting and displacement with dislocation plane N 22"K and inclination of ~ 75° towards XI 12°E. Considering the focal location and our geostructural knowledge of the area involved, the Reggio Calabria earthquake can be explained by a process of tectonic distension due to the drift of the Calabrian Arc and to other reliable geostructural elements. The explanation is critically evaluated in relation to the tectonic forces involving the Strait of Messina and the volcanic zone of Etna.

  5. Structural characterization suggests models for monomeric and dimeric forms of full-length ezrin.

    Science.gov (United States)

    Phang, Juanita M; Harrop, Stephen J; Duff, Anthony P; Sokolova, Anna V; Crossett, Ben; Walsh, James C; Beckham, Simone A; Nguyen, Cuong D; Davies, Roberta B; Glöckner, Carina; Bromley, Elizabeth H C; Wilk, Krystyna E; Curmi, Paul M G

    2016-09-15

    Ezrin is a member of the ERM (ezrin-radixin-moesin) family of proteins that have been conserved through metazoan evolution. These proteins have dormant and active forms, where the latter links the actin cytoskeleton to membranes. ERM proteins have three domains: an N-terminal FERM [band Four-point-one (4.1) ERM] domain comprising three subdomains (F1, F2, and F3); a helical domain; and a C-terminal actin-binding domain. In the dormant form, FERM and C-terminal domains form a stable complex. We have determined crystal structures of the active FERM domain and the dormant FERM:C-terminal domain complex of human ezrin. We observe a bistable array of phenylalanine residues in the core of subdomain F3 that is mobile in the active form and locked in the dormant form. As subdomain F3 is pivotal in binding membrane proteins and phospholipids, these transitions may facilitate activation and signaling. Full-length ezrin forms stable monomers and dimers. We used small-angle X-ray scattering to determine the solution structures of these species. As expected, the monomer shows a globular domain with a protruding helical coiled coil. The dimer shows an elongated dumbbell structure that is twice as long as the monomer. By aligning ERM sequences spanning metazoan evolution, we show that the central helical region is conserved, preserving the heptad repeat. Using this, we have built a dimer model where each monomer forms half of an elongated antiparallel coiled coil with domain-swapped FERM:C-terminal domain complexes at each end. The model suggests that ERM dimers may bind to actin in a parallel fashion.

  6. Rate control management of atrial fibrillation: may a mathematical model suggest an ideal heart rate?

    Directory of Open Access Journals (Sweden)

    Matteo Anselmino

    Full Text Available Despite the routine prescription of rate control therapy for atrial fibrillation (AF, clinical evidence demonstrating a heart rate target is lacking. Aim of the present study was to run a mathematical model simulating AF episodes with a different heart rate (HR to predict hemodynamic parameters for each situation.The lumped model, representing the pumping heart together with systemic and pulmonary circuits, was run to simulate AF with HR of 50, 70, 90, 110 and 130 bpm, respectively.Left ventricular pressure increased by 57%, from 33.92±37.56 mmHg to 53.15±47.56 mmHg, and mean systemic arterial pressure increased by 27%, from 82.66±14.04 mmHg to 105.3±7.6 mmHg, at the 50 and 130 bpm simulations, respectively. Stroke volume (from 77.45±8.50 to 39.09±8.08 mL, ejection fraction (from 61.10±4.40 to 39.32±5.42% and stroke work (SW, from 0.88±0.04 to 0.58±0.09 J decreased by 50, 36 and 34%, at the 50 and 130 bpm simulations, respectively. In addition, oxygen consumption indexes (rate pressure product - RPP, tension time index per minute - TTI/min, and pressure volume area per minute - PVA/min increased from the 50 to the 130 bpm simulation, respectively, by 186% (from 5598±1939 to 15995±3219 mmHg/min, 56% (from 2094±265 to 3257±301 mmHg s/min and 102% (from 57.99±17.90 to 117.4±26.0 J/min. In fact, left ventricular efficiency (SW/PVA decreased from 80.91±2.91% at 50 bpm to 66.43±3.72% at the 130 bpm HR simulation.Awaiting compulsory direct clinical evidences, the present mathematical model suggests that lower HRs during permanent AF relates to improved hemodynamic parameters, cardiac efficiency, and lower oxygen consumption.

  7. Structural rearrangements of chromosome 15 satellites resulting in Prader-Willi syndrome suggest a complex mechanism for uniparental disomy

    Energy Technology Data Exchange (ETDEWEB)

    Toth-Fijel, S.; Gunter, K.; Olson, S. [Oregon Health Sciences Univ., Portland, OR (United States)] [and others

    1994-09-01

    We report two cases of PWS in which there was abnormal meiosis I segregation of chromosome 15 following a rare translocation event between the heteromorphic satellite regions of chromosomes 14 and 15 and an apparent meiotic recombination in the unstable region of 15q11.2. PWS and normal appearing chromosomes in case one prompted a chromosome 15 origin analysis. PCR analysis indicated maternal isodisomy for the long arm of chromosome. However, only one chromosome 15 had short arm heteromorphisms consistent with either paternal or maternal inheritance. VNTR DNA analysis and heteromorphism data suggest that a maternal de novo translocation between chromosome 14 and 15 occurred prior to meiosis I. This was followed by recombination between D15Z1 and D15S11 and subsequent meiosis I nondisjunction. Proband and maternal karyotype display a distamycin A-DAPI positive region on the chromosome 14 homolog involved in the translocation. Fluorescent in situ hybridization (FISH) analyses of ONCOR probes D15S11, SNRPN, D15S11 and GABRB 3 were normal, consistent with the molecular data. Case two received a Robertsonian translocation t(14;15)(p13;p13) of maternal origin. Chromosome analysis revealed a meiosis I error producing UPD. FISH analysis of the proband and parents showed normal hybridization of ONCOR probes D15Z1, D15S11, SNRPN, D15S10 and GABRB3. In both cases the PWS probands received a structurally altered chromosome 15 that had rearranged with chromosome 14 prior to meiosis. If proper meiotic segregation is dependent on the resolution of chiasmata and/or the binding to chromosome-specific spindle fibers, then it may be possible that rearrangements of pericentric or unstable regions of the genome disrupt normal disjunction and lead to uniparental disomy.

  8. Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

    Science.gov (United States)

    Fleishman, Sarel J; Whitehead, Timothy A; Strauch, Eva-Maria; Corn, Jacob E; Qin, Sanbo; Zhou, Huan-Xiang; Mitchell, Julie C; Demerdash, Omar N A; Takeda-Shitaka, Mayuko; Terashi, Genki; Moal, Iain H; Li, Xiaofan; Bates, Paul A; Zacharias, Martin; Park, Hahnbeom; Ko, Jun-su; Lee, Hasup; Seok, Chaok; Bourquard, Thomas; Bernauer, Julie; Poupon, Anne; Azé, Jérôme; Soner, Seren; Ovali, Sefik Kerem; Ozbek, Pemra; Tal, Nir Ben; Haliloglu, Türkan; Hwang, Howook; Vreven, Thom; Pierce, Brian G; Weng, Zhiping; Pérez-Cano, Laura; Pons, Carles; Fernández-Recio, Juan; Jiang, Fan; Yang, Feng; Gong, Xinqi; Cao, Libin; Xu, Xianjin; Liu, Bin; Wang, Panwen; Li, Chunhua; Wang, Cunxin; Robert, Charles H; Guharoy, Mainak; Liu, Shiyong; Huang, Yangyu; Li, Lin; Guo, Dachuan; Chen, Ying; Xiao, Yi; London, Nir; Itzhaki, Zohar; Schueler-Furman, Ora; Inbar, Yuval; Potapov, Vladimir; Cohen, Mati; Schreiber, Gideon; Tsuchiya, Yuko; Kanamori, Eiji; Standley, Daron M; Nakamura, Haruki; Kinoshita, Kengo; Driggers, Camden M; Hall, Robert G; Morgan, Jessica L; Hsu, Victor L; Zhan, Jian; Yang, Yuedong; Zhou, Yaoqi; Kastritis, Panagiotis L; Bonvin, Alexandre M J J; Zhang, Weiyi; Camacho, Carlos J; Kilambi, Krishna P; Sircar, Aroop; Gray, Jeffrey J; Ohue, Masahito; Uchikoga, Nobuyuki; Matsuzaki, Yuri; Ishida, Takashi; Akiyama, Yutaka; Khashan, Raed; Bush, Stephen; Fouches, Denis; Tropsha, Alexander; Esquivel-Rodríguez, Juan; Kihara, Daisuke; Stranges, P Benjamin; Jacak, Ron; Kuhlman, Brian; Huang, Sheng-You; Zou, Xiaoqin; Wodak, Shoshana J; Janin, Joel; Baker, David

    2011-11-25

    The CAPRI (Critical Assessment of Predicted Interactions) and CASP (Critical Assessment of protein Structure Prediction) experiments have demonstrated the power of community-wide tests of methodology in assessing the current state of the art and spurring progress in the very challenging areas of protein docking and structure prediction. We sought to bring the power of community-wide experiments to bear on a very challenging protein design problem that provides a complementary but equally fundamental test of current understanding of protein-binding thermodynamics. We have generated a number of designed protein-protein interfaces with very favorable computed binding energies but which do not appear to be formed in experiments, suggesting that there may be important physical chemistry missing in the energy calculations. A total of 28 research groups took up the challenge of determining what is missing: we provided structures of 87 designed complexes and 120 naturally occurring complexes and asked participants to identify energetic contributions and/or structural features that distinguish between the two sets. The community found that electrostatics and solvation terms partially distinguish the designs from the natural complexes, largely due to the nonpolar character of the designed interactions. Beyond this polarity difference, the community found that the designed binding surfaces were, on average, structurally less embedded in the designed monomers, suggesting that backbone conformational rigidity at the designed surface is important for realization of the designed function. These results can be used to improve computational design strategies, but there is still much to be learned; for example, one designed complex, which does form in experiments, was classified by all metrics as a nonbinder.

  9. Rate Control Management of Atrial Fibrillation: May a Mathematical Model Suggest an Ideal Heart Rate?

    CERN Document Server

    Anselmino, Matteo; Camporeale, Carlo; Saglietto, Andrea; Gaita, Fiorenzo; Ridolfi, Luca

    2015-01-01

    Background. Despite the routine prescription of rate control therapy for atrial fibrillation (AF), clinical evidence demonstrating a heart rate target is lacking. Aim of the present study was to run a mathematical model simulating AF episodes with a different heart rate (HR) to predict hemodynamic parameters for each situation. Methods. The lumped model, representing the pumping heart together with systemic and pulmonary circuits, was run to simulate AF with HR of 50, 70, 90, 110 and 130 bpm, respectively. Results. Left ventricular pressure increased by 56.7%, from 33.92+-37.56 mmHg to 53.15+-47.56 mmHg, and mean systemic arterial pressure increased by 27.4%, from 82.66+-14.04 mmHg to 105.29+-7.63 mmHg, at the 50 and 130 bpm simulations, respectively. Stroke volume (from 77.45+-8.5 to 39.09+-8.08 mL), ejection fraction (from 61.1+-4.4 to 39.32+-5.42%) and stroke work (SW, from 0.88+-0.04 to 0.58+-0.09 J) decreased by 49.5, 35.6 and 34.2%, at the 50 and 130 bpm simulations, respectively. In addition, oxygen co...

  10. Computational modeling suggests distinct, location-specific function of norepinephrine in olfactory bulb and piriform cortex

    Directory of Open Access Journals (Sweden)

    Licurgo ede Almeida

    2015-06-01

    Full Text Available Noradrenergic modulation from the locus coerulus is often associated with the regulation of sensory signal-to-noise ratio. In the olfactory system, noradrenergic modulation affects both bulbar and cortical processing, and has been show to modulate the detection of low concentration stimuli. We here implemented a computational model of the olfactory bulb and piriform cortex, based on known experimental results, to explore how noradrenergic modulation in the olfactory bulb and piriform cortex interact to regulate odor processing. We show that as predicted by behavioral experiments in our lab, norepinephrine can play a critical role in modulating the detection and associative learning of very low odor concentrations. Our simulations show that bulbar norepinephrine serves to pre-process odor representations to facilitate cortical learning, but not recall. We observe the typical non-uniform dose – response functions described for norepinephrine modulation and show that these are imposed mainly by bulbar, but not cortical processing.

  11. Computational modeling suggests distinct, location-specific function of norepinephrine in olfactory bulb and piriform cortex.

    Science.gov (United States)

    de Almeida, Licurgo; Reiner, Seungdo J; Ennis, Matthew; Linster, Christiane

    2015-01-01

    Noradrenergic modulation from the locus coerulus is often associated with the regulation of sensory signal-to-noise ratio. In the olfactory system, noradrenergic modulation affects both bulbar and cortical processing, and has been shown to modulate the detection of low concentration stimuli. We here implemented a computational model of the olfactory bulb and piriform cortex, based on known experimental results, to explore how noradrenergic modulation in the olfactory bulb and piriform cortex interact to regulate odor processing. We show that as predicted by behavioral experiments in our lab, norepinephrine can play a critical role in modulating the detection and associative learning of very low odor concentrations. Our simulations show that bulbar norepinephrine serves to pre-process odor representations to facilitate cortical learning, but not recall. We observe the typical non-uniform dose-response functions described for norepinephrine modulation and show that these are imposed mainly by bulbar, but not cortical processing.

  12. Preparing for severe contrast media reactions in children - results of a national survey, a literature review and a suggested protocol

    Energy Technology Data Exchange (ETDEWEB)

    Lindsay, R., E-mail: rwklindsay@hotmail.co [Imaging Centre, Royal Victoria Hospital, Belfast, Northern Ireland (United Kingdom); Paterson, A. [Radiology Department, The Royal Belfast Hospital for Sick Children, Belfast, Northern Ireland (United Kingdom); Edgar, D. [Immunology Department, Royal Victoria Hospital, Belfast, Northern Ireland (United Kingdom)

    2011-04-15

    Aim: To identify current practices within paediatric radiology in the UK with regard to the use of prophylactic medication, prior to administering intravenous (IV) radiocontrast medium (RCM). In addition, the pre-injection risk management strategies of the departments questioned was to be evaluated, and using consensus opinion, a protocol for managing patients identified as being at high risk for an adverse reaction to RCM was to be outlined. Materials and methods: An online survey of paediatric radiology consultants representing all geographic regions of the UK was carried out. The questions asked included an assessment of the risk factors for adverse reactions to RCM, and how such reactions are anticipated and managed. The questionnaire asked about the perceived indications for, and the use of prophylactic medication prior to RCM administration. Results: A response rate of 51% was achieved. The majority of respondents felt that a history of previous RCM reaction was an indication to administer prophylactic drugs prior to a further dose of RCM. No other risk factor was believed to require prophylactic medication. Conclusion: Using information obtained from the survey, a literature search was performed to assess the evidence available in support of each practice. A protocol was devised to identify children at risk of an adverse reaction to RCM, and guide the use of prophylactic medication in this group of patients. The survey highlighted considerable variability in the risk-assessment and management practices within paediatric radiology in the UK. The derived protocol may guide radiologists' management of children at risk for an RCM reaction.

  13. Organizational suggestion system in the era of holding by developing an innovative model : the case of bonyade ta avon holding in Iran(an applied model

    Directory of Open Access Journals (Sweden)

    Meysam Ghasemi

    2010-01-01

    Full Text Available One of the popular ways of taking advantage of personnel creativity is through suggestionsystems. Our main question is how to implement suggestion system in holding with conglomeratestructure. The paper presents an innovative model that were named ITFSK Model with accordanceof Bonayade Taavone (a holding that has many companies and institutions with conglomeratestructure. ITFSK is a model that explains how participation management and suggestion system isimplemented effectively in huge Enterprises (holding and this approach brings continuousimprovement (kaizen and it impacts the productivity of these enterprises.The paper is based on field research and the research in Bonyade Tavan that has 22 companies and2 institutions that activity fields of the subholdings is very varied.Our model consists of five main parts such as ideas bank, think-tank, feedback, sharing ofknowledge and kaizen that was named ITFSK.Implementation of “Suggestion system” rules has immediate and significant effects on theproductivity of activities in the jobs, thus influencing the performance of processes in the analyzedorganization. Suggestion system can result in kaizen and innovation in environment oforganization.The model was used to implement and evaluate a suggestion system of holding with conglomeratedstructure. The application of the model to evaluate the suggestion system provided some goodinsights and highlighted some areas of improvement.

  14. Coordinating the Provision of Health Services in Humanitarian Crises: a Systematic Review of Suggested Models

    OpenAIRE

    Lotfi, Tamara; Bou-Karroum, Lama; Darzi, Andrea; Hajjar, Rayan; El Rahyel, Ahmed; El Eid, Jamale; Itani, Mira; Brax, Hneine; Akik, Chaza; Osman, Mona; Hassan, Ghayda; El-Jardali, Fadi; Akl, Elie

    2016-01-01

    Background: Our objective was to identify published models of coordination between entities funding or delivering health services in humanitarian crises, whether the coordination took place during or after the crises. Methods: We included reports describing models of coordination in sufficient detail to allow reproducibility. We also included reports describing implementation of identified models, as case studies. We searched Medline, PubMed, EMBASE, Cochrane Central Register of Controlled Tr...

  15. Conceptual Models in Health Informatics Research: A Literature Review and Suggestions for Development

    OpenAIRE

    Gray, Kathleen; Sockolow, Paulina

    2016-01-01

    Background Contributing to health informatics research means using conceptual models that are integrative and explain the research in terms of the two broad domains of health science and information science. However, it can be hard for novice health informatics researchers to find exemplars and guidelines in working with integrative conceptual models. Objectives The aim of this paper is to support the use of integrative conceptual models in research on information and communication technologi...

  16. Mathematical modeling suggests that periodontitis behaves as a non-linear chaotic dynamical process

    NARCIS (Netherlands)

    Papantonopoulos, G.H.; Takahashi, K.; Bountis, T.; Loos, B.G.

    2013-01-01

    Background: This study aims to expand on a previously presented cellular automata model and further explore the non-linear dynamics of periodontitis. Additionally the authors investigated whether their mathematical model could predict the two known types of periodontitis, aggressive (AgP) and

  17. A Multi-Scale Energy Demand Model suggests sharing Market Risks with Intelligent Energy Cooperatives

    NARCIS (Netherlands)

    Methenitis, G.; Kaisers, M.; La Poutré, J.A.

    2015-01-01

    In this paper, we propose a multi-scale model of energy demand that is consistent with observations at a macro scale, in our use-case standard load profiles for (residential) electric loads. We employ the model to study incentives to assume the risk of volatile market prices for intelligent energy c

  18. A Literature Review of Empowerment With a Suggested Empowerment Model for the BDF

    Science.gov (United States)

    2003-12-01

    21 A. THE CONGER AND KANUNGO MODEL ......................................... 21 B. THE THOMAS AND VELTHHOUSE MODEL...that people already have in their wealth and useful knowledge and internal motivation.” Similarly, Conger and Kanungo (1988, p...empowerment as sharing power and authority (a relational perspective), while definitions by Randolph and Conger and Kanungo view empowerment as a

  19. Predictor Relationships between Values Held by Married Individuals, Resilience and Conflict Resolution Styles: A Model Suggestion

    Science.gov (United States)

    Tosun, Fatma; Dilmac, Bulent

    2015-01-01

    The aim of the present research is to reveal the predictor relationships between the values held by married individuals, resilience and conflict resolution styles. The research adopts a relational screening model that is a sub-type of the general screening model. The sample of the research consists of 375 married individuals, of which 173 are…

  20. Mathematical modeling suggests that periodontitis behaves as a non-linear chaotic dynamical process

    NARCIS (Netherlands)

    Papantonopoulos, G.H.; Takahashi, K.; Bountis, T.; Loos, B.G.

    2013-01-01

    Background: This study aims to expand on a previously presented cellular automata model and further explore the non-linear dynamics of periodontitis. Additionally the authors investigated whether their mathematical model could predict the two known types of periodontitis, aggressive (AgP) and chroni

  1. A multi-scale distribution model for non-equilibrium populations suggests resource limitation in an endangered rodent.

    Directory of Open Access Journals (Sweden)

    William T Bean

    Full Text Available Species distributions are known to be limited by biotic and abiotic factors at multiple temporal and spatial scales. Species distribution models, however, frequently assume a population at equilibrium in both time and space. Studies of habitat selection have repeatedly shown the difficulty of estimating resource selection if the scale or extent of analysis is incorrect. Here, we present a multi-step approach to estimate the realized and potential distribution of the endangered giant kangaroo rat. First, we estimate the potential distribution by modeling suitability at a range-wide scale using static bioclimatic variables. We then examine annual changes in extent at a population-level. We define "available" habitat based on the total suitable potential distribution at the range-wide scale. Then, within the available habitat, model changes in population extent driven by multiple measures of resource availability. By modeling distributions for a population with robust estimates of population extent through time, and ecologically relevant predictor variables, we improved the predictive ability of SDMs, as well as revealed an unanticipated relationship between population extent and precipitation at multiple scales. At a range-wide scale, the best model indicated the giant kangaroo rat was limited to areas that received little to no precipitation in the summer months. In contrast, the best model for shorter time scales showed a positive relation with resource abundance, driven by precipitation, in the current and previous year. These results suggest that the distribution of the giant kangaroo rat was limited to the wettest parts of the drier areas within the study region. This multi-step approach reinforces the differing relationship species may have with environmental variables at different scales, provides a novel method for defining "available" habitat in habitat selection studies, and suggests a way to create distribution models at spatial and

  2. Evidence Suggesting a Role of Iron in a Mouse Model of Nephrogenic Systemic Fibrosis.

    Directory of Open Access Journals (Sweden)

    Chhanda Bose

    Full Text Available Nephrogenic systemic fibrosis is associated with gadolinium contrast exposure in patients with reduced kidney function and carries high morbidity and mortality. We have previously demonstrated that gadolinium contrast agents induce in vivo systemic iron mobilization and in vitro differentiation of peripheral blood mononuclear cells into ferroportin (iron exporter-expressing fibrocytic cells. In the present study we examined the role of iron in a mouse model of nephrogenic systemic fibrosis. Chronic kidney disease was induced in 8-week-old male Balb/C mice with a two-step 5/6 nephrectomy surgery. Five groups of mice were studied: control (n = 5, sham surgery control (n = 5, chronic kidney disease control (n = 4, chronic kidney disease injected with 0.5 mmol/kg body weight of Omniscan 3 days per week, for a total of 10 injections (n = 8, and chronic kidney disease with Omniscan plus deferiprone, 125 mg/kg, in drinking water (n = 9. Deferiprone was continued for 16 weeks until the end of the experiment. Mice with chronic kidney disease injected with Omniscan developed skin changes characteristic of nephrogenic systemic fibrosis including hair loss, reddening, ulceration, and skin tightening by 10 to 16 weeks. Histopathological sections demonstrated dermal fibrosis with increased skin thickness (0.25±0.06 mm, sham; 0.34±+0.3 mm, Omniscan-injected. Additionally, we observed an increase in tissue infiltration of ferroportin-expressing, fibrocyte-like cells accompanied by tissue iron accumulation in the skin of the Omniscan-treated mice. The deferiprone-treated group had significantly decreased skin thickness (p<0.05 and significantly decreased dermal fibrosis compared to the Omniscan-only group. In addition, iron chelation prevented tissue infiltration of ferroportin-expressing, fibrocyte-like cells. Our in vitro experiments demonstrated that exposure to Omniscan resulted in the release of catalytic iron and this was prevented by the iron chelator

  3. Interpreting Results from the Multinomial Logit Model

    DEFF Research Database (Denmark)

    Wulff, Jesper

    2015-01-01

    This article provides guidelines and illustrates practical steps necessary for an analysis of results from the multinomial logit model (MLM). The MLM is a popular model in the strategy literature because it allows researchers to examine strategic choices with multiple outcomes. However, there see...

  4. Eliminating both canonical and short-patch mismatch repair in Drosophila melanogaster suggests a new meiotic recombination model.

    Science.gov (United States)

    Crown, K Nicole; McMahan, Susan; Sekelsky, Jeff

    2014-09-01

    In most meiotic systems, recombination is essential to form connections between homologs that ensure their accurate segregation from one another. Meiotic recombination is initiated by DNA double-strand breaks that are repaired using the homologous chromosome as a template. Studies of recombination in budding yeast have led to a model in which most early repair intermediates are disassembled to produce noncrossovers. Selected repair events are stabilized so they can proceed to form double-Holliday junction (dHJ) intermediates, which are subsequently resolved into crossovers. This model is supported in yeast by physical isolation of recombination intermediates, but the extent to which it pertains to animals is unknown. We sought to test this model in Drosophila melanogaster by analyzing patterns of heteroduplex DNA (hDNA) in recombination products. Previous attempts to do this have relied on knocking out the canonical mismatch repair (MMR) pathway, but in both yeast and Drosophila the resulting recombination products are complex and difficult to interpret. We show that, in Drosophila, this complexity results from a secondary, short-patch MMR pathway that requires nucleotide excision repair. Knocking out both canonical and short-patch MMR reveals hDNA patterns that reveal that many noncrossovers arise after both ends of the break have engaged with the homolog. Patterns of hDNA in crossovers could be explained by biased resolution of a dHJ; however, considering the noncrossover and crossover results together suggests a model in which a two-end engagement intermediate with unligated HJs can be disassembled by a helicase to a produce noncrossover or nicked by a nuclease to produce a crossover. While some aspects of this model are similar to the model from budding yeast, production of both noncrossovers and crossovers from a single, late intermediate is a fundamental difference that has important implications for crossover control.

  5. Eliminating both canonical and short-patch mismatch repair in Drosophila melanogaster suggests a new meiotic recombination model.

    Directory of Open Access Journals (Sweden)

    K Nicole Crown

    2014-09-01

    Full Text Available In most meiotic systems, recombination is essential to form connections between homologs that ensure their accurate segregation from one another. Meiotic recombination is initiated by DNA double-strand breaks that are repaired using the homologous chromosome as a template. Studies of recombination in budding yeast have led to a model in which most early repair intermediates are disassembled to produce noncrossovers. Selected repair events are stabilized so they can proceed to form double-Holliday junction (dHJ intermediates, which are subsequently resolved into crossovers. This model is supported in yeast by physical isolation of recombination intermediates, but the extent to which it pertains to animals is unknown. We sought to test this model in Drosophila melanogaster by analyzing patterns of heteroduplex DNA (hDNA in recombination products. Previous attempts to do this have relied on knocking out the canonical mismatch repair (MMR pathway, but in both yeast and Drosophila the resulting recombination products are complex and difficult to interpret. We show that, in Drosophila, this complexity results from a secondary, short-patch MMR pathway that requires nucleotide excision repair. Knocking out both canonical and short-patch MMR reveals hDNA patterns that reveal that many noncrossovers arise after both ends of the break have engaged with the homolog. Patterns of hDNA in crossovers could be explained by biased resolution of a dHJ; however, considering the noncrossover and crossover results together suggests a model in which a two-end engagement intermediate with unligated HJs can be disassembled by a helicase to a produce noncrossover or nicked by a nuclease to produce a crossover. While some aspects of this model are similar to the model from budding yeast, production of both noncrossovers and crossovers from a single, late intermediate is a fundamental difference that has important implications for crossover control.

  6. A Latent Growth Model Suggests that Empathy of Medical Students Does Not Decline over Time

    Science.gov (United States)

    Costa, Patrício; Magalhães, Eunice; Costa, Manuel João

    2013-01-01

    Empathy is a relevant attribute in the context of patient care. However, a decline in empathy throughout medical education has been reported in North-American medical schools, particularly, in the transition to clinical training. The present study aims to longitudinally model empathy during medical school at three time points: at the entrance,…

  7. A Latent Growth Model Suggests that Empathy of Medical Students Does Not Decline over Time

    Science.gov (United States)

    Costa, Patrício; Magalhães, Eunice; Costa, Manuel João

    2013-01-01

    Empathy is a relevant attribute in the context of patient care. However, a decline in empathy throughout medical education has been reported in North-American medical schools, particularly, in the transition to clinical training. The present study aims to longitudinally model empathy during medical school at three time points: at the entrance,…

  8. Modelling soil organic carbon in Danish agricultural soils suggests low potential for future carbon sequestration

    DEFF Research Database (Denmark)

    Taghizadeh-Toosi, Arezoo; Olesen, Jørgen Eivind

    2016-01-01

    Soil organic carbon (SOC) is in active exchange with the atmosphere. The amount of organic carbon (OC) input into the soil and SOC turnover rate are important for predicting the carbon (C) sequestration potential of soils subject to changes in land-use and climate. The C-TOOL model was developed...

  9. Modeling of the human rhinovirus C capsid suggests possible causes for antiviral drug resistance.

    Science.gov (United States)

    Basta, Holly A; Ashraf, Shamaila; Sgro, Jean-Yves; Bochkov, Yury A; Gern, James E; Palmenberg, Ann C

    2014-01-05

    Human rhinoviruses of the RV-C species are recently discovered pathogens with greater clinical significance than isolates in the RV-A+B species. The RV-C cannot be propagated in typical culture systems; so much of the virology is necessarily derivative, relying on comparative genomics, relative to the better studied RV-A+B. We developed a bioinformatics-based structural model for a C15 isolate. The model showed the VP1-3 capsid proteins retain their fundamental cores relative to the RV-A+B, but conserved, internal RV-C residues affect the shape and charge of the VP1 hydrophobic pocket that confers antiviral drug susceptibility. When predictions of the model were tested in organ cultures or ALI systems with recombinant C15 virus, there was a resistance to capsid-binding drugs, including pleconaril, BTA-188, WIN56291, WIN52035 and WIN52084. Unique to all RV-C, the model predicts conserved amino acids within the pocket and capsid surface pore leading to the pocket may correlate with this activity.

  10. A suggested model for physical examination and conservative treatment of athletic pubalgia.

    Science.gov (United States)

    Hegedus, Eric J; Stern, Ben; Reiman, Michael P; Tarara, Dan; Wright, Alexis A

    2013-02-01

    Athletic pubalgia (AP) is a chronic debilitating syndrome that affects many athletes. As a syndrome, AP is difficult to diagnose both with clinical examination and imaging. AP is also a challenge for conservative intervention with randomized controlled trials showing mixed success rates. In other syndromes where clinical diagnosis and conservative treatment have been less than clear, a paradigm has been suggested as a framework for clinical decision making. To propose a new clinical diagnostic and treatment paradigm for the conservative management of AP. Relevant studies were viewed with regard to diagnosis and intervention and where a gap in evidence existed, clinical expertise was used to fill that gap and duly noted. A new paradigm is proposed to assist with clinical diagnosis and non-surgical intervention in patients suffering with AP. The level of evidence supporting this paradigm, according to the SORT taxonomy, is primarily level 2B. Further testing is warranted but following the suggested paradigm should lead to a clearer diagnosis of AP and allow more meaningful research into homogeneous patient populations within the AP diagnostic cluster. Strength-of-Recommendation Taxonomy (SORT): 2B. Copyright © 2012 Elsevier Ltd. All rights reserved.

  11. Quantitative magnetospheric models: results and perspectives.

    Science.gov (United States)

    Kuznetsova, M.; Hesse, M.; Gombosi, T.; Csem Team

    Global magnetospheric models are indispensable tool that allow multi-point measurements to be put into global context Significant progress is achieved in global MHD modeling of magnetosphere structure and dynamics Medium resolution simulations confirm general topological pictures suggested by Dungey State of the art global models with adaptive grids allow performing simulations with highly resolved magnetopause and magnetotail current sheet Advanced high-resolution models are capable to reproduced transient phenomena such as FTEs associated with formation of flux ropes or plasma bubbles embedded into magnetopause and demonstrate generation of vortices at magnetospheric flanks On the other hand there is still controversy about the global state of the magnetosphere predicted by MHD models to the point of questioning the length of the magnetotail and the location of the reconnection sites within it For example for steady southwards IMF driving condition resistive MHD simulations produce steady configuration with almost stationary near-earth neutral line While there are plenty of observational evidences of periodic loading unloading cycle during long periods of southward IMF Successes and challenges in global modeling of magnetispheric dynamics will be addessed One of the major challenges is to quantify the interaction between large-scale global magnetospheric dynamics and microphysical processes in diffusion regions near reconnection sites Possible solutions to controversies will be discussed

  12. Modeling of Glycerol-3-Phosphate Transporter Suggests a Potential ‘Tilt’ Mechanism involved in its Function

    Science.gov (United States)

    Tsigelny, Igor F.; Greenberg, Jerry; Kouznetsova, Valentina; Nigam, Sanjay K.

    2009-01-01

    Many major facilitator superfamily (MFS) transporters have similar 12-transmembrane α-helical topologies with two six-helix halves connected by a long loop. In humans, these transporters participate in key physiological processes and are also, as in the case of members of the organic anion transporter (OAT) family, of pharmaceutical interest. Recently, crystal structures of two bacterial representatives of the MFS family — the glycerol-3-phosphate transporter (GlpT) and lac-permease (LacY) — have been solved and, because of assumptions regarding the high structural conservation of this family, there is hope that the results can be applied to mammalian transporters as well. Based on crystallography, it has been suggested that a major conformational “switching” mechanism accounts for ligand transport by MFS proteins. This conformational switch would then allow periodic changes in the overall transporter configuration, resulting in its cyclic opening to the periplasm or cytoplasm. Following this lead, we have modeled a possible “switch” mechanism in GlpT, using the concept of rotation of protein domains as in the DynDom program17 and membranephilic constraints predicted by the MAPAS program.23 We found that the minima of energies of intersubunit interactions support two alternate positions consistent with their transport properties. Thus, for GlpT, a “tilt” of 9°–10° rotation had the most favorable energetics of electrostatic interaction between the two halves of the transporter; moreover, this confirmation was sufficient to suggest transport of the ligand across the membrane. We conducted steered molecular dynamics simulations of the GlpT-ligand system to explore how glycerol-3-phosphate would be handled by the “tilted” structure, and obtained results generally consistent with experimental mutagenesis data. While biochemical data remain most consistent with a single-site alternating access model, our results raise the possibility that, while

  13. Engineering Glass Passivation Layers -Model Results

    Energy Technology Data Exchange (ETDEWEB)

    Skorski, Daniel C.; Ryan, Joseph V.; Strachan, Denis M.; Lepry, William C.

    2011-08-08

    The immobilization of radioactive waste into glass waste forms is a baseline process of nuclear waste management not only in the United States, but worldwide. The rate of radionuclide release from these glasses is a critical measure of the quality of the waste form. Over long-term tests and using extrapolations of ancient analogues, it has been shown that well designed glasses exhibit a dissolution rate that quickly decreases to a slow residual rate for the lifetime of the glass. The mechanistic cause of this decreased corrosion rate is a subject of debate, with one of the major theories suggesting that the decrease is caused by the formation of corrosion products in such a manner as to present a diffusion barrier on the surface of the glass. Although there is much evidence of this type of mechanism, there has been no attempt to engineer the effect to maximize the passivating qualities of the corrosion products. This study represents the first attempt to engineer the creation of passivating phases on the surface of glasses. Our approach utilizes interactions between the dissolving glass and elements from the disposal environment to create impermeable capping layers. By drawing from other corrosion studies in areas where passivation layers have been successfully engineered to protect the bulk material, we present here a report on mineral phases that are likely have a morphological tendency to encrust the surface of the glass. Our modeling has focused on using the AFCI glass system in a carbonate, sulfate, and phosphate rich environment. We evaluate the minerals predicted to form to determine the likelihood of the formation of a protective layer on the surface of the glass. We have also modeled individual ions in solutions vs. pH and the addition of aluminum and silicon. These results allow us to understand the pH and ion concentration dependence of mineral formation. We have determined that iron minerals are likely to form a complete incrustation layer and we plan

  14. Research Spotlight: Model suggests path to ending the ongoing Haitian cholera epidemic

    Science.gov (United States)

    Schultz, Colin

    2011-05-01

    Since early November 2010 a deadly cholera epidemic has been spreading across the Caribbean nation of Haiti, killing thousands of people and infecting hundreds of thousands. While infection rates are being actively monitored, health organizations have been left without a clear understanding of exactly how the disease has spread across Haiti. Cholera can spread through exposure to contaminated water, and the disease travels over long distances if an infected individual moves around the country. Using representations of these two predominant dispersion mechanisms, along with information on the size of the susceptible population, the number of infected individuals, and the aquatic concentration of the cholera-causing bacteria for more than 500 communities, Bertuzzo et al. designed a model that was able to accurately reproduce the progression of the Haitian cholera epidemic. (Geophysical Research Letters, doi:10.1029/2011GL046823, 2011)

  15. Three-Dimensional Analysis of Budding Sites and Released Virus Suggests a Revised Model for HIV-1 Morphogenesis

    Energy Technology Data Exchange (ETDEWEB)

    Carlson, L.; Simon, M.; Briggs, J. A. G.; Glass, B.; Riches, J. D.; Johnson, M. C.; Muller, B.; Grunewald, K.; Krausslich, H.-G.

    2008-12-11

    Current models of HIV-1 morphogenesis hold that newly synthesized viral Gag polyproteins traffic to and assemble at the cell membrane into spherical protein shells. The resulting late-budding structure is thought to be released by the cellular ESCRT machinery severing the membrane tether connecting it to the producer cell. Using electron tomography and scanning transmission electron microscopy, we find that virions have a morphology and composition distinct from late-budding sites. Gag is arranged as a continuous but incomplete sphere in the released virion. In contrast, late-budding sites lacking functional ESCRT exhibited a nearly closed Gag sphere. The results lead us to propose that budding is initiated by Gag assembly, but is completed in an ESCRT-dependent manner before the Gag sphere is complete. This suggests that ESCRT functions early in HIV-1 release - akin to its role in vesicle formation - and is not restricted to severing the thin membrane tether.

  16. Graphical modeling of gene expression in monocytes suggests molecular mechanisms explaining increased atherosclerosis in smokers.

    Directory of Open Access Journals (Sweden)

    Ricardo A Verdugo

    Full Text Available Smoking is a risk factor for atherosclerosis with reported widespread effects on gene expression in circulating blood cells. We hypothesized that a molecular signature mediating the relation between smoking and atherosclerosis may be found in the transcriptome of circulating monocytes. Genome-wide expression profiles and counts of atherosclerotic plaques in carotid arteries were collected in 248 smokers and 688 non-smokers from the general population. Patterns of co-expressed genes were identified by Independent Component Analysis (ICA and network structure of the pattern-specific gene modules was inferred by the PC-algorithm. A likelihood-based causality test was implemented to select patterns that fit models containing a path "smoking→gene expression→plaques". Robustness of the causal inference was assessed by bootstrapping. At a FDR ≤0.10, 3,368 genes were associated to smoking or plaques, of which 93% were associated to smoking only. SASH1 showed the strongest association to smoking and PPARG the strongest association to plaques. Twenty-nine gene patterns were identified by ICA. Modules containing SASH1 and PPARG did not show evidence for the "smoking→gene expression→plaques" causality model. Conversely, three modules had good support for causal effects and exhibited a network topology consistent with gene expression mediating the relation between smoking and plaques. The network with the strongest support for causal effects was connected to plaques through SLC39A8, a gene with known association to HDL-cholesterol and cellular uptake of cadmium from tobacco, while smoking was directly connected to GAS6, a gene reported to have anti-inflammatory effects in atherosclerosis and to be up-regulated in the placenta of women smoking during pregnancy. Our analysis of the transcriptome of monocytes recovered genes relevant for association to smoking and atherosclerosis, and connected genes that before, were only studied in separate contexts

  17. Combining Opinion Profile Modeling with Complex Context Filtering for Contextual Suggestion

    Science.gov (United States)

    2015-11-20

    pub, theaters, music venues and avoid venues that are closed at night, e.g. brunch restaurants. For day trip, in contrast we avoid hotel, bar, pub...participated three years TRECs in a row, it is worthy to analyze more about our method since the main idea is highly consistent. One important statistic...We further analyze the advantage and disadvantage of our method in order to provide more investigation results to the research community. References

  18. Hydraulic fracture model comparison study: Complete results

    Energy Technology Data Exchange (ETDEWEB)

    Warpinski, N.R. [Sandia National Labs., Albuquerque, NM (United States); Abou-Sayed, I.S. [Mobil Exploration and Production Services (United States); Moschovidis, Z. [Amoco Production Co. (US); Parker, C. [CONOCO (US)

    1993-02-01

    Large quantities of natural gas exist in low permeability reservoirs throughout the US. Characteristics of these reservoirs, however, make production difficult and often economic and stimulation is required. Because of the diversity of application, hydraulic fracture design models must be able to account for widely varying rock properties, reservoir properties, in situ stresses, fracturing fluids, and proppant loads. As a result, fracture simulation has emerged as a highly complex endeavor that must be able to describe many different physical processes. The objective of this study was to develop a comparative study of hydraulic-fracture simulators in order to provide stimulation engineers with the necessary information to make rational decisions on the type of models most suited for their needs. This report compares the fracture modeling results of twelve different simulators, some of them run in different modes for eight separate design cases. Comparisons of length, width, height, net pressure, maximum width at the wellbore, average width at the wellbore, and average width in the fracture have been made, both for the final geometry and as a function of time. For the models in this study, differences in fracture length, height and width are often greater than a factor of two. In addition, several comparisons of the same model with different options show a large variability in model output depending upon the options chosen. Two comparisons were made of the same model run by different companies; in both cases the agreement was good. 41 refs., 54 figs., 83 tabs.

  19. Coumarins as Potential Antioxidant Agents Complemented with Suggested Mechanisms and Approved by Molecular Modeling Studies

    Directory of Open Access Journals (Sweden)

    Yasameen K. Al-Majedy

    2016-01-01

    Full Text Available Syntheses of coumarins, which are a structurally interesting antioxidant activity, was done in this article. The modification of 7-hydroxycoumarin by different reaction steps was done to yield target compounds. Molecular structures were characterized by different spectroscopical techniques (Fourier transformation infrared and nuclear magnetic resonance. Antioxidant activities were performed by using various in vitro spectrophometric assays against 1,1-diphenyl-2-picrylhydrazyl (DPPH radical and hydrogen peroxide (H2O2. All compounds exhibited high efficiency as antioxidants compared to ascorbic acid. The highest efficiency scavenging activity was found for compound 3 (91.0 ± 5.0, followed by compounds 2 and 4 (88.0 ± 2.00; and 87.0 ± 3.00. Ascorbic acid C was used as a standard drug with a percentage inhibition of 91.00 ± 1.5. The mechanism of the synthesized compounds as antioxidants was also studied. Hartree–Fock–based quantum chemical studies have been carried out with the basis set to 3-21G, in order to obtain information about the three-dimensional (3D geometries, electronic structure, molecular modeling, and electronic levels, namely HOMO (highest occupied molecular orbital and LUMO (lowest unoccupied molecular orbital, to understand the antioxidant activity for the synthesized compounds.

  20. Model of a Generic Natural Uranium Conversion Plant ? Suggested Measures to Strengthen International Safeguards

    Energy Technology Data Exchange (ETDEWEB)

    Raffo-Caiado, Ana Claudia [ORNL; Begovich, John M [ORNL; Ferrada, Juan J [ORNL

    2009-11-01

    This is the final report that closed a joint collaboration effort between DOE and the National Nuclear Energy Commission of Brazil (CNEN). In 2005, DOE and CNEN started a collaborative effort to evaluate measures that can strengthen the effectiveness of international safeguards at a natural uranium conversion plant (NUCP). The work was performed by DOE s Oak Ridge National Laboratory and CNEN. A generic model of a NUCP was developed and typical processing steps were defined. Advanced instrumentation and techniques for verification purposes were identified and investigated. The scope of the work was triggered by the International Atomic Energy Agency s 2003 revised policy concerning the starting point of safeguards at uranium conversion facilities. Prior to this policy only the final products of the uranium conversion plant were considered to be of composition and purity suitable for use in the nuclear fuel cycle and therefore, subject to the IAEA safeguards control. DOE and CNEN have explored options for implementing the IAEA policy, although Brazil understands that the new policy established by the IAEA is beyond the framework of the Quadripartite Agreement of which it is one of the parties, together with Argentina, the Brazilian-Argentine Agency for Accounting and Control of Nuclear Materials (ABACC) and the IAEA. Two technical papers on this subject were published at the 2005 and 2008 INMM Annual Meetings.

  1. Model of a Generic Natural Uranium Conversion Plant ? Suggested Measures to Strengthen International Safeguards

    Energy Technology Data Exchange (ETDEWEB)

    Raffo-Caiado, Ana Claudia [ORNL; Begovich, John M [ORNL; Ferrada, Juan J [ORNL

    2009-11-01

    This is the final report that closed a joint collaboration effort between DOE and the National Nuclear Energy Commission of Brazil (CNEN). In 2005, DOE and CNEN started a collaborative effort to evaluate measures that can strengthen the effectiveness of international safeguards at a natural uranium conversion plant (NUCP). The work was performed by DOE s Oak Ridge National Laboratory and CNEN. A generic model of a NUCP was developed and typical processing steps were defined. Advanced instrumentation and techniques for verification purposes were identified and investigated. The scope of the work was triggered by the International Atomic Energy Agency s 2003 revised policy concerning the starting point of safeguards at uranium conversion facilities. Prior to this policy only the final products of the uranium conversion plant were considered to be of composition and purity suitable for use in the nuclear fuel cycle and therefore, subject to the IAEA safeguards control. DOE and CNEN have explored options for implementing the IAEA policy, although Brazil understands that the new policy established by the IAEA is beyond the framework of the Quadripartite Agreement of which it is one of the parties, together with Argentina, the Brazilian-Argentine Agency for Accounting and Control of Nuclear Materials (ABACC) and the IAEA. Two technical papers on this subject were published at the 2005 and 2008 INMM Annual Meetings.

  2. Performance results of HESP physical model

    Science.gov (United States)

    Chanumolu, Anantha; Thirupathi, Sivarani; Jones, Damien; Giridhar, Sunetra; Grobler, Deon; Jakobsson, Robert

    2017-02-01

    As a continuation to the published work on model based calibration technique with HESP(Hanle Echelle Spectrograph) as a case study, in this paper we present the performance results of the technique. We also describe how the open parameters were chosen in the model for optimization, the glass data accuracy and handling the discrepancies. It is observed through simulations that the discrepancies in glass data can be identified but not quantifiable. So having an accurate glass data is important which is possible to obtain from the glass manufacturers. The model's performance in various aspects is presented using the ThAr calibration frames from HESP during its pre-shipment tests. Accuracy of model predictions and its wave length calibration comparison with conventional empirical fitting, the behaviour of open parameters in optimization, model's ability to track instrumental drifts in the spectrum and the double fibres performance were discussed. It is observed that the optimized model is able to predict to a high accuracy the drifts in the spectrum from environmental fluctuations. It is also observed that the pattern in the spectral drifts across the 2D spectrum which vary from image to image is predictable with the optimized model. We will also discuss the possible science cases where the model can contribute.

  3. Modeling Malaysia's Energy System: Some Preliminary Results

    Directory of Open Access Journals (Sweden)

    Ahmad M. Yusof

    2011-01-01

    Full Text Available Problem statement: The current dynamic and fragile world energy environment necessitates the development of new energy model that solely caters to analyze Malaysia’s energy scenarios. Approach: The model is a network flow model that traces the flow of energy carriers from its sources (import and mining through some conversion and transformation processes for the production of energy products to final destinations (energy demand sectors. The integration to the economic sectors is done exogeneously by specifying the annual sectoral energy demand levels. The model in turn optimizes the energy variables for a specified objective function to meet those demands. Results: By minimizing the inter temporal petroleum product imports for the crude oil system the annual extraction level of Tapis blend is projected at 579600 barrels per day. The aggregate demand for petroleum products is projected to grow at 2.1% year-1 while motor gasoline and diesel constitute 42 and 38% of the petroleum products demands mix respectively over the 5 year planning period. Petroleum products import is expected to grow at 6.0% year-1. Conclusion: The preliminary results indicate that the model performs as expected. Thus other types of energy carriers such as natural gas, coal and biomass will be added to the energy system for the overall development of Malaysia energy model.

  4. Mathematical Models Suggest Facilitated Fatty Acids Crossing of the Luminal Membrane in the Cardiac Muscle.

    Science.gov (United States)

    Barta, Efrath

    2017-02-01

    Long-chain fatty acids cross a few membranes on their way from the capillary blood to the cardiomyocyte cytosol, where they are utilized as an essential source of energy. Details of the transport mechanism across those membranes remained elusive despite decades of laboratory and theoretical work. Here we inspect several optional scenarios for the crossing of the luminal membrane of the endothelial cell, the first barrier that should be crossed: a passive diffusion, facilitation by receptors for albumin and facilitation by fatty acids transporters. Related measured rate constants are incorporated in a theoretical simulation that is based on reaction-diffusion equations. Asymptotic analytical solutions for the resulting stiff boundary value problems are formulated based on singular perturbations theory. We conclude that a passive diffusion has to be supplemented with facilitation mechanisms in order to meet energy requirements. Binding sites for albumin, scattered on the membrane face, might enhance the flux provided that they internalize the captured fatty acids and speed up the dissociation of the albumin-fatty acids complex. As such enhancement is moderate, another mechanism seems to be essential for an adequate supply of fatty acids. Lack of experimental data prohibits us from computing the quantitative effect of membrane fatty acids transporters but their involvement in the membrane crossing is inferred.

  5. Food Choice Questionnaire (FCQ) revisited. Suggestions for the development of an enhanced general food motivation model.

    Science.gov (United States)

    Fotopoulos, Christos; Krystallis, Athanasios; Vassallo, Marco; Pagiaslis, Anastasios

    2009-02-01

    Recognising the need for a more statistically robust instrument to investigate general food selection determinants, the research validates and confirms Food Choice Questionnaire (FCQ's) factorial design, develops ad hoc a more robust FCQ version and tests its ability to discriminate between consumer segments in terms of the importance they assign to the FCQ motivational factors. The original FCQ appears to represent a comprehensive and reliable research instrument. However, the empirical data do not support the robustness of its 9-factorial design. On the other hand, segmentation results at the subpopulation level based on the enhanced FCQ version bring about an optimistic message for the FCQ's ability to predict food selection behaviour. The paper concludes that some of the basic components of the original FCQ can be used as a basis for a new general food motivation typology. The development of such a new instrument, with fewer, of higher abstraction FCQ-based dimensions and fewer items per dimension, is a right step forward; yet such a step should be theory-driven, while a rigorous statistical testing across and within population would be necessary.

  6. A physiological production model for cacao : results of model simulations

    NARCIS (Netherlands)

    Zuidema, P.A.; Leffelaar, P.A.

    2002-01-01

    CASE2 is a physiological model for cocoa (Theobroma cacao L.) growth and yield. This report introduces the CAcao Simulation Engine for water-limited production in a non-technical way and presents simulation results obtained with the model.

  7. A physiological production model for cacao : results of model simulations

    NARCIS (Netherlands)

    Zuidema, P.A.; Leffelaar, P.A.

    2002-01-01

    CASE2 is a physiological model for cocoa (Theobroma cacao L.) growth and yield. This report introduces the CAcao Simulation Engine for water-limited production in a non-technical way and presents simulation results obtained with the model.

  8. Modelling rainfall erosion resulting from climate change

    Science.gov (United States)

    Kinnell, Peter

    2016-04-01

    It is well known that soil erosion leads to agricultural productivity decline and contributes to water quality decline. The current widely used models for determining soil erosion for management purposes in agriculture focus on long term (~20 years) average annual soil loss and are not well suited to determining variations that occur over short timespans and as a result of climate change. Soil loss resulting from rainfall erosion is directly dependent on the product of runoff and sediment concentration both of which are likely to be influenced by climate change. This presentation demonstrates the capacity of models like the USLE, USLE-M and WEPP to predict variations in runoff and erosion associated with rainfall events eroding bare fallow plots in the USA with a view to modelling rainfall erosion in areas subject to climate change.

  9. Simulation Modeling of Radio Direction Finding Results

    Directory of Open Access Journals (Sweden)

    K. Pelikan

    1994-12-01

    Full Text Available It is sometimes difficult to determine analytically error probabilities of direction finding results for evaluating algorithms of practical interest. Probalistic simulation models are described in this paper that can be to study error performance of new direction finding systems or to geographical modifications of existing configurations.

  10. Retrospective analysis of the quality of reports by author-suggested and non-author-suggested reviewers in journals operating on open or single-blind peer review models

    Science.gov (United States)

    Kowalczuk, Maria K; Dudbridge, Frank; Nanda, Shreeya; Harriman, Stephanie L; Patel, Jigisha; Moylan, Elizabeth C

    2015-01-01

    Objectives To assess whether reports from reviewers recommended by authors show a bias in quality and recommendation for editorial decision, compared with reviewers suggested by other parties, and whether reviewer reports for journals operating on open or single-blind peer review models differ with regard to report quality and reviewer recommendations. Design Retrospective analysis of the quality of reviewer reports using an established Review Quality Instrument, and analysis of reviewer recommendations and author satisfaction surveys. Setting BioMed Central biology and medical journals. BMC Infectious Diseases and BMC Microbiology are similar in size, rejection rates, impact factors and editorial processes, but the former uses open peer review while the latter uses single-blind peer review. The Journal of Inflammation has operated under both peer review models. Sample Two hundred reviewer reports submitted to BMC Infectious Diseases, 200 reviewer reports submitted to BMC Microbiology and 400 reviewer reports submitted to the Journal of Inflammation. Results For each journal, author-suggested reviewers provided reports of comparable quality to non-author-suggested reviewers, but were significantly more likely to recommend acceptance, irrespective of the peer review model (previewer reports measured by the Review Quality Instrument was 5% higher than for BMC Microbiology (p=0.042). For the Journal of Inflammation, the quality of reports was the same irrespective of the peer review model used. Conclusions Reviewers suggested by authors provide reports of comparable quality to non-author-suggested reviewers, but are significantly more likely to recommend acceptance. Open peer review reports for BMC Infectious Diseases were of higher quality than single-blind reports for BMC Microbiology. There was no difference in quality of peer review in the Journal of Inflammation under open peer review compared with single blind. PMID:26423855

  11. An improved numerical model suggests potential differences of wind-blown sand between on Earth and Mars

    Science.gov (United States)

    Bo, T. L.; Fu, L. T.; Liu, L.; Zheng, X. J.

    2017-06-01

    The studies on wind-blown sand are crucial for understanding the change of climate and landscape on Mars. However, the disadvantages of the saltation models may result in unreliable predictions. In this paper, the saltation model has been improved from two main aspects, the aerodynamic surface roughness and the lift-off parameters. The aerodynamic surface roughness is expressed as function of particle size, wind strength, air density, and air dynamic viscosity. The lift-off parameters are improved through including the dependence of restitution coefficient on incident parameters and the correlation between saltating speed and angle. The improved model proved to be capable of reproducing the observed data well in both stable stage and evolution process. The modeling of wind-blown sand is promoted by all improved aspects, and the dependence of restitution coefficient on incident parameters could not be ignored. The constant restitution coefficient and uncorrelated lift-off parameter distributions would lead to both the overestimation of the sand transport rate and apparent surface roughness and the delay of evolution process. The distribution of lift-off speed and the evolution of lift-off parameters on Mars are found to be different from those on Earth. This may thus suggest that it is inappropriate to predict the evolution of wind-blown sand by using the lift-off velocity obtained in steady state saltation. And it also may be problematic to predict the wind-blown sand on Mars through applying the lift-off velocity obtained upon terrestrial conditions directly.

  12. Progressive effect of beta amyloid peptides accumulation on CA1 pyramidal neurons: a model study suggesting possible treatments

    Directory of Open Access Journals (Sweden)

    Viviana eCulmone

    2012-07-01

    Full Text Available Several independent studies show that accumulation of β-amyloid (Aβ peptides , one of the characteristic hallmark of Alzheimer’s Disease (AD, can affect normal neuronal activity in different ways. However, in spite of intense experimental work to explain the possible underlying mechanisms of action, a comprehensive and congruent understanding is still lacking. Part of the problem might be the opposite ways in which Aβ have been experimentally found to affect the normal activity of a neuron; for example, making a neuron more excitable (by reducing the A- or DR-type K+ currents or less excitable (by reducing synaptic transmission and Na+ current. The overall picture is therefore confusing, since the interplay of many mechanisms makes it difficult to link individual experimental findings with the more general problem of understanding the progression of the disease. This is an important issue, especially for the development of new drugs trying to ameliorate the effects of the disease. We addressed these paradoxes through computational models. We first modeled the different stages of AD by progressively modifying the intrinsic membrane and synaptic properties of a realistic model neuron, while accounting for multiple and different experimental findings and by evaluating the contribution of each mechanism to the overall modulation of the cell’s excitability. We then tested a number of manipulations of channel and synaptic activation properties that could compensate for the effects of Aβ. The model predicts possible therapeutic treatments in terms of pharmacological manipulations of channels’ kinetic and activation properties. The results also suggest how and which mechanisms can be targeted by a drug to restore the original firing conditions.

  13. Hypofractionation in non-small cell lung cancer (NSCLC): suggestions from modelling both acute and chronic hypoxia

    Energy Technology Data Exchange (ETDEWEB)

    Ruggieri, Ruggero [Department of Medical Physics, Az. Osp. Bianchi Melacrino Morelli, Via Melacrino, 89100 Reggio Calabria (Italy)

    2004-10-21

    Based on experimental estimates for acute and chronic tumour hypoxia, a speculative analysis of the therapeutic ratio dependence on the number of once-daily five-days-per-week fractions (n) for non-small cell lung cancer (NSCLC) radiotherapy is proposed. For this purpose an adapted formulation of the linear-quadratic model has been derived, including the effects of tumour repopulation, inter-tumour {alpha}-heterogeneity and oxygen enhancement ratio dependence on the dose per fraction. The relation between the curative dose D{sub 50}, assuring 50% tumour control probability, and n has been computed: for (n, D{sub 50}) fractionation schemes, the therapeutic ratios have been compared in terms of effective normalized total doses to the lungs (NTD{sup eff}{sub L}), estimated by a few supposed fractions of the normalized total dose to the tumour. Results suggest that D{sub 50} is dominated by chronic hypoxia for shortly hypofractionated treatments and by acute hypoxia for multifractionated treatments. Furthermore, the optimum number of fractions depends on the rapidity of the reoxygenation from chronically hypoxic cells, almost independently of the extent of both chronic and acute hypoxia. For NSCLC, both the reduction of n until about 20 fractions in hypofractionated dose-escalation trials, and the extension of extra-cranial stereotactic radiotherapy schedules to include at least 5-10 fractions, seem to be supported by this model.

  14. Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling.

    Science.gov (United States)

    Inoue, Jun; Sato, Yukuto; Sinclair, Robert; Tsukamoto, Katsumi; Nishida, Mutsumi

    2015-12-01

    Whole-genome duplication (WGD) is believed to be a significant source of major evolutionary innovation. Redundant genes resulting from WGD are thought to be lost or acquire new functions. However, the rates of gene loss and thus temporal process of genome reshaping after WGD remain unclear. The WGD shared by all teleost fish, one-half of all jawed vertebrates, was more recent than the two ancient WGDs that occurred before the origin of jawed vertebrates, and thus lends itself to analysis of gene loss and genome reshaping. Using a newly developed orthology identification pipeline, we inferred the post-teleost-specific WGD evolutionary histories of 6,892 protein-coding genes from nine phylogenetically representative teleost genomes on a time-calibrated tree. We found that rapid gene loss did occur in the first 60 My, with a loss of more than 70-80% of duplicated genes, and produced similar genomic gene arrangements within teleosts in that relatively short time. Mathematical modeling suggests that rapid gene loss occurred mainly by events involving simultaneous loss of multiple genes. We found that the subsequent 250 My were characterized by slow and steady loss of individual genes. Our pipeline also identified about 1,100 shared single-copy genes that are inferred to have become singletons before the divergence of clupeocephalan teleosts. Therefore, our comparative genome analysis suggests that rapid gene loss just after the WGD reshaped teleost genomes before the major divergence, and provides a useful set of marker genes for future phylogenetic analysis.

  15. CMS standard model Higgs boson results

    Directory of Open Access Journals (Sweden)

    Garcia-Abia Pablo

    2013-11-01

    Full Text Available In July 2012 CMS announced the discovery of a new boson with properties resembling those of the long-sought Higgs boson. The analysis of the proton-proton collision data recorded by the CMS detector at the LHC, corresponding to integrated luminosities of 5.1 fb−1 at √s = 7 TeV and 19.6 fb−1 at √s = 8 TeV, confirm the Higgs-like nature of the new boson, with a signal strength associated with vector bosons and fermions consistent with the expectations for a standard model (SM Higgs boson, and spin-parity clearly favouring the scalar nature of the new boson. In this note I review the updated results of the CMS experiment.

  16. 40 CFR Figure C-1 to Subpart C of... - Suggested Format for Reporting Test Results for Methods for SO 2, CO, O 3, NO 2

    Science.gov (United States)

    2010-07-01

    ... Results for Methods for SO 2, CO, O 3, NO 2 C Figure C-1 to Subpart C of Part 53 Protection of Environment... Pt. 53, Subpt. C, Fig. C-1 Figure C-1 to Subpart C of Part 53—Suggested Format for Reporting Test... Difference Table C-1 spec. Pass or fail Low 1 ____ ppm 2 to ____ ppm 3 4 5 6 Medium 1 ____ ppm 2 to ____ ppm...

  17. Revisiting Runoff Model Calibration: Airborne Snow Observatory Results Allow Improved Modeling Results

    Science.gov (United States)

    McGurk, B. J.; Painter, T. H.

    2014-12-01

    Deterministic snow accumulation and ablation simulation models are widely used by runoff managers throughout the world to predict runoff quantities and timing. Model fitting is typically based on matching modeled runoff volumes and timing with observed flow time series at a few points in the basin. In recent decades, sparse networks of point measurements of the mountain snowpacks have been available to compare with modeled snowpack, but the comparability of results from a snow sensor or course to model polygons of 5 to 50 sq. km is suspect. However, snowpack extent, depth, and derived snow water equivalent have been produced by the NASA/JPL Airborne Snow Observatory (ASO) mission for spring of 20013 and 2014 in the Tuolumne River basin above Hetch Hetchy Reservoir. These high-resolution snowpack data have exposed the weakness in a model calibration based on runoff alone. The U.S. Geological Survey's Precipitation Runoff Modeling System (PRMS) calibration that was based on 30-years of inflow to Hetch Hetchy produces reasonable inflow results, but modeled spatial snowpack location and water quantity diverged significantly from the weekly measurements made by ASO during the two ablation seasons. The reason is that the PRMS model has many flow paths, storages, and water transfer equations, and a calibrated outflow time series can be right for many wrong reasons. The addition of a detailed knowledge of snow extent and water content constrains the model so that it is a better representation of the actual watershed hydrology. The mechanics of recalibrating PRMS to the ASO measurements will be described, and comparisons in observed versus modeled flow for both a small subbasin and the entire Hetch Hetchy basin will be shown. The recalibrated model provided a bitter fit to the snowmelt recession, a key factor for water managers as they balance declining inflows with demand for power generation and ecosystem releases during the final months of snow melt runoff.

  18. Modeling Malaysia's Energy System: Some Preliminary Results

    OpenAIRE

    Ahmad M. Yusof

    2011-01-01

    Problem statement: The current dynamic and fragile world energy environment necessitates the development of new energy model that solely caters to analyze Malaysias energy scenarios. Approach: The model is a network flow model that traces the flow of energy carriers from its sources (import and mining) through some conversion and transformation processes for the production of energy products to final destinations (energy demand sectors). The integration to the economic sectors is done exogene...

  19. Modelling Virus and Antibody Dynamics during Dengue Virus Infection Suggests a Role for Antibody in Virus Clearance.

    Directory of Open Access Journals (Sweden)

    Hannah E Clapham

    2016-05-01

    Full Text Available Dengue is an infection of increasing global importance, yet uncertainty remains regarding critical aspects of its virology, immunology and epidemiology. One unanswered question is how infection is controlled and cleared during a dengue infection. Antibody is thought to play a role, but little past work has examined the kinetics of both virus and antibody during natural infections. We present data on multiple virus and antibody titres measurements recorded sequentially during infection from 53 Vietnamese dengue patients. We fit mechanistic mathematical models of the dynamics of viral replication and the host immune response to these data. These models fit the data well. The model with antibody removing virus fits the data best, but with a role suggested for ADCC or other infected cell clearance mechanisms. Our analysis therefore shows that the observed viral and antibody kinetics are consistent with antibody playing a key role in controlling viral replication. This work gives quantitative insight into the relationship between antibody levels and the efficiency of viral clearance. It will inform the future development of mechanistic models of how vaccines and antivirals might modify the course of natural dengue infection.

  20. Model suggests potential for Porites coral population recovery after removal of anthropogenic disturbance (Luhuitou, Hainan, South China Sea)

    Science.gov (United States)

    Zhao, Meixia; Riegl, Bernhard; Yu, Kefu; Shi, Qi; Zhang, Qiaomin; Liu, Guohui; Yang, Hongqiang; Yan, Hongqiang

    2016-09-01

    Population models are important for resource management and can inform about potential trajectories useful for planning purposes, even with incomplete monitoring data. From size frequency data on Luhuitou fringing reef, Hainan, South China Sea, a matrix population model of massive corals (Porites lutea) was developed and trajectories over 100 years under no disturbance and random disturbances were projected. The model reflects a largely open population of Porites lutea, with low local recruitment and preponderance of imported recruitment. Under no further disturbance, the population of Porites lutea will grow and its size structure will change from predominance of small size classes to large size classes. Therewith, total Porites cover will increase. Even under random disturbances every 10 to 20 years, the Porites population could remain viable, albeit at lower space cover. The models suggest recovery at Luhuitou following the removal of chronic anthropogenic disturbance. Extending the area of coral reef reserves to protect the open coral community and the path of connectivity is advisable and imperative for the conservation of Hainan’s coral reefs.

  1. Regression modeling of the North East Atlantic Spring Bloom suggests previously unrecognized biological roles for V and Mo

    Directory of Open Access Journals (Sweden)

    Nick J Klein

    2013-03-01

    Full Text Available In order to identify the biogeochemical parameters controlling pCO2, total chlorophyll a, and dimethylsulfide (DMS concentrations during the North East Atlantic Spring Bloom (NASB, we used previously unpublished particulate and dissolved elemental concentrations to construct several linear regression models; first by hypothesis-testing, and then with exhaustive stepwise linear regression followed by leave-one-out cross-validation. The field data was obtained along a latitudinal transect from the Azores Islands to the North Atlantic, and best-fit models (determined by lowest predictive error of up to three variables are presented. Total chlorophyll a is predicted best by biomass (POC, PON parameters and by pigments characteristic of picophytoplankton for the southern section of the sampling transect (from the Azores to the Rockhall-Hatton Plateau and coccolithophores in the northern portion (from the Rockhall-Hatton Plateau to the Denmark Strait. Both the pCO2 and DMS models included variables traditionally associated with the development of the NASB such as mixed-layer depth and with Fe, Si and P-deplete conditions (dissolved Fe, dissolved and biogenic silica, dissolved PO43-. However, the regressions for pCO2 and DMS also include intracellular V and Mo concentrations, respectively. Mo is involved in DMS production as a cofactor in dimethylsulfoxide reductase. No significant biological role for V has yet been determined, although intracellular V is significantly correlated (p-value < 0.05 with biogenic silica (R2 = 0.72 and total chlorophyll a (R2 = 0.49 while the same is not true for its biogeochemical analogue Mo, suggesting active uptake of V by phytoplankton. Our statistical analysis suggests these two lesser-studied metals may play more important roles in bloom dynamics than previously thought, and highlights a need for studies focused on determining their potential biological requirements and cell quotas.

  2. Modeling clicks beyond the first result page

    NARCIS (Netherlands)

    Chuklin, A.; Serdyukov, P.; de Rijke, M.

    2013-01-01

    Most modern web search engines yield a list of documents of a fixed length (usually 10) in response to a user query. The next ten search results are usually available in one click. These documents either replace the current result page or are appended to the end. Hence, in order to examine more

  3. Modeling clicks beyond the first result page

    NARCIS (Netherlands)

    Chuklin, A.; Serdyukov, P.; de Rijke, M.

    2013-01-01

    Most modern web search engines yield a list of documents of a fixed length (usually 10) in response to a user query. The next ten search results are usually available in one click. These documents either replace the current result page or are appended to the end. Hence, in order to examine more docu

  4. Mutational Analyses of HAMP Helices Suggest a Dynamic Bundle Model of Input-Output Signaling in Chemoreceptors

    Science.gov (United States)

    Zhou, Qin; Ames, Peter; Parkinson, John S.

    2009-01-01

    SUMMARY To test the gearbox model of HAMP signaling in the E. coli serine receptor, Tsr, we generated a series of amino acid replacements at each residue of the AS1 and AS2 helices. The residues most critical for Tsr function defined hydrophobic packing faces consistent with a 4-helix bundle. Suppression patterns of helix lesions conformed to the the predicted packing layers in the bundle. Although the properties and patterns of most AS1 and AS2 lesions were consistent with both proposed gearbox structures, some mutational features specifically indicate the functional importance of an x-da bundle over an alternative a-d bundle. These genetic data suggest that HAMP signaling could simply involve changes in the stability of its x-da bundle. We propose that Tsr HAMP controls output signals by modulating destabilizing phase clashes between the AS2 helices and the adjoining kinase control helices. Our model further proposes that chemoeffectors regulate HAMP bundle stability through a control cable connection between the transmembrane segments and AS1 helices. Attractant stimuli, which cause inward piston displacements in chemoreceptors, should reduce cable tension, thereby stabilizing the HAMP bundle. This study shows how transmembrane signaling and HAMP input-output control could occur without the helix rotations central to the gearbox model. PMID:19656294

  5. Engineering model development and test results

    Science.gov (United States)

    Wellman, John A.

    1993-08-01

    The correctability of the primary mirror spherical error in the Wide Field/Planetary Camera (WF/PC) is sensitive to the precise alignment of the incoming aberrated beam onto the corrective elements. Articulating fold mirrors that provide +/- 1 milliradian of tilt in 2 axes are required to allow for alignment corrections in orbit as part of the fix for the Hubble space telescope. An engineering study was made by Itek Optical Systems and the Jet Propulsion Laboratory (JPL) to investigate replacement of fixed fold mirrors within the existing WF/PC optical bench with articulating mirrors. The study contract developed the base line requirements, established the suitability of lead magnesium niobate (PMN) actuators and evaluated several tilt mechanism concepts. Two engineering model articulating mirrors were produced to demonstrate the function of the tilt mechanism to provide +/- 1 milliradian of tilt, packaging within the space constraints and manufacturing techniques including the machining of the invar tilt mechanism and lightweight glass mirrors. The success of the engineering models led to the follow on design and fabrication of 3 flight mirrors that have been incorporated into the WF/PC to be placed into the Hubble Space Telescope as part of the servicing mission scheduled for late 1993.

  6. Microplasticity of MMC. Experimental results and modelling

    Energy Technology Data Exchange (ETDEWEB)

    Maire, E. (Groupe d' Etude de Metallurgie Physique et de Physique des Materiaux, INSA, 69 Villeurbanne (France)); Lormand, G. (Groupe d' Etude de Metallurgie Physique et de Physique des Materiaux, INSA, 69 Villeurbanne (France)); Gobin, P.F. (Groupe d' Etude de Metallurgie Physique et de Physique des Materiaux, INSA, 69 Villeurbanne (France)); Fougeres, R. (Groupe d' Etude de Metallurgie Physique et de Physique des Materiaux, INSA, 69 Villeurbanne (France))

    1993-11-01

    The microplastic behavior of several MMC is investigated by means of tension and compression tests. This behavior is assymetric : the proportional limit is higher in tension than in compression but the work hardening rate is higher in compression. These differences are analysed in terms of maxium of the Tresca's shear stress at the interface (proportional limit) and of the emission of dislocation loops during the cooling (work hardening rate). On another hand, a model is proposed to calculate the value of the yield stress, describing the composite as a material composed of three phases : inclusion, unaffected matrix and matrix surrounding the inclusion having a gradient in the density of the thermally induced dilocations. (orig.).

  7. Modeling HLA associations with EBV-positive and -negative Hodgkin lymphoma suggests distinct mechanisms in disease pathogenesis.

    Science.gov (United States)

    Johnson, Paul C D; McAulay, Karen A; Montgomery, Dorothy; Lake, Annette; Shield, Lesley; Gallagher, Alice; Little, Ann-Margaret; Shah, Anila; Marsh, Steven G E; Taylor, G Malcolm; Jarrett, Ruth F

    2015-09-01

    HLA genotyping and genome wide association studies provide strong evidence for associations between Human Leukocyte Antigen (HLA) alleles and classical Hodgkin lymphoma (cHL). Analysis of these associations is complicated by the extensive linkage disequilibrium within the major histocompatibility region and recent data suggesting that associations with EBV-positive and EBV-negative cHL are largely distinct. To distinguish independent and therefore potentially causal associations from associations confounded by linkage disequilibrium, we applied a variable selection regression modeling procedure to directly typed HLA class I and II genes and selected SNPs from EBV-stratified patient subgroups. In final models, HLA-A*01:01 and B*37:01 were associated with an increased risk of EBV-positive cHL whereas DRB1*15:01 and DPB1*01:01 were associated with decreased risk. Effects were independent of a prior history of infectious mononucleosis. For EBV-negative cHL the class II SNP rs6903608 remained the strongest predictor of disease risk after adjusting for the effects of common HLA alleles. Associations with "all cHL" and differences by case EBV status reflected the subgroup analysis. In conclusion, this study extends previous findings by identifying novel HLA associations with EBV-stratified subgroups of cHL, highlighting those alleles likely to be biologically relevant and strengthening evidence implicating genetic variation associated with the SNP rs6903608.

  8. Single-cell quantification of Bax activation and mathematical modelling suggest pore formation on minimal mitochondrial Bax accumulation.

    Science.gov (United States)

    Düssmann, H; Rehm, M; Concannon, C G; Anguissola, S; Würstle, M; Kacmar, S; Völler, P; Huber, H J; Prehn, J H M

    2010-02-01

    Mitochondrial outer membrane permeabilisation (MOMP) during apoptosis is triggered by the activation and oligomerisation of Bax and Bak, but a quantification of these processes in individual cells has not yet been performed. Single-cell imaging of Bax translocation and oligomerisation in Bax-deficient DU-145 cells expressing CFP-Bax and YFP-Bax revealed that both processes started only minutes before or concomitantly with MOMP, with the majority of Bax translocation and oligomerisation occurring downstream of MOMP. Quantification of YFP-Bax concentrations at mitochondria revealed an increase of only 1.8 + or - 1.5% at MOMP onset. This was increased to 11.2 + or - 3.6% in bak-silenced cells. These data suggested that Bax activation exceeded by far the quantities required for MOMP induction, and that minimal Bax or Bak activation may be sufficient to trigger rapid pore formation. In a cellular automaton modelling approach that incorporated the quantities and movement probabilities of Bax and its inhibitors, activators and enablers in the mitochondrial membrane, we could re-model rapid pore formation kinetics at submaximal Bax activation.

  9. An orthotopic xenograft model of intraneural NF1 MPNST suggests a potential association between steroid hormones and tumor cell proliferation.

    Science.gov (United States)

    Perrin, George Q; Li, Hua; Fishbein, Lauren; Thomson, Susanne A; Hwang, Min S; Scarborough, Mark T; Yachnis, Anthony T; Wallace, Margaret R; Mareci, Thomas H; Muir, David

    2007-11-01

    Malignant peripheral nerve sheath tumors (MPNST) are the most aggressive cancers associated with neurofibromatosis type 1 (NF1). Here we report a practical and reproducible model of intraneural NF1 MPNST, by orthotopic xenograft of an immortal human NF1 tumor-derived Schwann cell line into the sciatic nerves of female scid mice. Intraneural injection of the cell line sNF96.2 consistently produced MPNST-like tumors that were highly cellular and showed extensive intraneural growth. These xenografts had a high proliferative index, were angiogenic, had significant mast cell infiltration and rapidly dominated the host nerve. The histopathology of engrafted intraneural tumors was consistent with that of human NF1 MPNST. Xenograft tumors were readily examined by magnetic resonance imaging, which also was used to assess tumor vascularity. In addition, the intraneural proliferation of sNF96.2 cell tumors was decreased in ovariectomized mice, while replacement of estrogen or progesterone restored tumor cell proliferation. This suggests a potential role for steroid hormones in supporting tumor cell growth of this MPNST cell line in vivo. The controlled orthotopic implantation of sNF96.2 cells provides for the precise initiation of intraneural MPNST-like tumors in a model system suitable for therapeutic interventions, including inhibitors of angiogenesis and further study of steroid hormone effects on tumor cell growth.

  10. Molecular modeling and docking of novel laccase from multiple serotype of Yersinia enterocolitica suggests differential and multiple substrate binding.

    Science.gov (United States)

    Singh, Deepti; Sharma, Krishna Kant; Dhar, Mahesh Shanker; Virdi, Jugsharan Singh

    2014-06-20

    Multi-copper oxidases (MCOs) are widely distributed in bacteria, where they are responsible for metal homeostasis, acquisition and oxidation. Using specific primers, yacK coding for MCO was amplified from different serotypes of Yersinia enterocolitica biovar 1A. Homology modeling of the protein followed by docking with five well-known substrates for different MCO's (viz., 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulphonic acid [ABTS], syringaldazine, L-tyrosine, ammonium ferrous sulfate and guaiacol), lignin monomers (Coniferyl alcohol, p-coumaryl alcohol and sinapyl alcohol) and two inhibitors i.e., kojic acid and N-hydroxyglycine was done. The docking gave maximum GoldScore i.e., 91.93 and 72.64 with ammonium ferrous sulfate and ABTS, respectively. Similarly, docking with ICM gave -82.10 and -83.61 docking score, confirming the protein to be true laccase with ferroxidase activity. Further, validation with ammonium ferrous sulfate as substrate gave laccase activity of 0.36Units/L/min. Guaiacol, L-tyrosine, and lignin monomers showed good binding affinity with protein models with GoldScores of 35.89, 41.82, 40.41, 41.12 and 43.10, respectively. The sequence study of all the cloned Yack genes showed serotype specific clade in dendrogram. There was distinct discrimination in the ligand binding affinity of Y. enterocolitica laccase, among strains of same clonal groups, suggesting it as a tool for phylogenetic studies.

  11. Modeling Results For the ITER Cryogenic Fore Pump. Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Pfotenhauer, John M. [University of Wisconsin, Madison, WI (United States); Zhang, Dongsheng [University of Wisconsin, Madison, WI (United States)

    2014-03-31

    A numerical model characterizing the operation of a cryogenic fore-pump (CFP) for ITER has been developed at the University of Wisconsin – Madison during the period from March 15, 2011 through June 30, 2014. The purpose of the ITER-CFP is to separate hydrogen isotopes from helium gas, both making up the exhaust components from the ITER reactor. The model explicitly determines the amount of hydrogen that is captured by the supercritical-helium-cooled pump as a function of the inlet temperature of the supercritical helium, its flow rate, and the inlet conditions of the hydrogen gas flow. Furthermore the model computes the location and amount of hydrogen captured in the pump as a function of time. Throughout the model’s development, and as a calibration check for its results, it has been extensively compared with the measurements of a CFP prototype tested at Oak Ridge National Lab. The results of the model demonstrate that the quantity of captured hydrogen is very sensitive to the inlet temperature of the helium coolant on the outside of the cryopump. Furthermore, the model can be utilized to refine those tests, and suggests methods that could be incorporated in the testing to enhance the usefulness of the measured data.

  12. Activity-dependent depression of excitability and calcium transients in the neurohypophysis suggests a model of "stuttering conduction".

    Science.gov (United States)

    Muschol, Martin; Kosterin, Paul; Ichikawa, Michinori; Salzberg, B M

    2003-12-10

    Using millisecond time-resolved optical recordings of transmembrane voltage and intraterminal calcium, we have determined how activity-dependent changes in the population action potential are related to a concurrent modulation of calcium transients in the neurohypophysis. We find that repetitive stimulation dramatically alters the amplitude of the population action potential and significantly increases its temporal dispersion. The population action potentials and the calcium transients exhibit well correlated frequency-dependent amplitude depression, with broadening of the action potential playing only a limited role. High-speed camera recordings indicate that the magnitude of the spike modulation is uniform throughout the neurohypophysis, thereby excluding propagation failure as the underlying mechanism. In contrast, temporal dispersion and latency of the population spike do increase with distance from the stimulation site. This increase is enhanced during repeated stimulation and by raising the stimulation frequency. Changes in Ca influx directly affect the decline in population spike amplitude, consistent with electrophysiological measurements of the local loss of excitability in nerve terminals and varicosities, mediated by a Ca-activated K conductance. Our observations suggest a model of "stuttering conduction": repeated action potential stimulation causes excitability failures limited to nerve terminals and varicosities, which account for the rapid decline in the population spike amplitude. These failures, however, do not block action potential propagation but generate the cumulative increases in spike latency.

  13. Genomic, RNAseq, and molecular modeling evidence suggests that the major allergen domain in insects evolved from a homodimeric origin.

    Science.gov (United States)

    Randall, Thomas A; Perera, Lalith; London, Robert E; Mueller, Geoffrey A

    2013-01-01

    The major allergen domain (MA) is widely distributed in insects. The crystal structure of a single Bla g 1 MA revealed a novel protein fold in which the fundamental structure was a duplex of two subsequences (monomers), which had diverged over time. This suggested that the evolutionary origin of the MA structure may have been a homodimer of this smaller subsequence. Using publicly available genomic data, the distribution of the basic unit of this class of proteins was determined to better understand its evolutionary history. The duplication and divergence is examined at three distinct levels of resolution: 1) within the orders Diptera and Hymenoptera, 2) within one genus Drosophila, and 3) within one species Aedes aegypti. Within the family Culicidae, we have found two separate occurrences of monomers as independent genes. The organization of the gene family in A. aegypti shows a common evolutionary origin for its monomer and several closely related MAs. Molecular modeling of the A. aegypti monomer with the unique Bla g 1 fold confirms the distant evolutionary relationship and supports the feasibility of homodimer formation from a single monomer. RNAseq data for A. aegypti confirms that the monomer is expressed in the mosquito similar to other A. aegypti MAs after a blood meal. Together, these data support the contention that the detected monomer shares similar functional characteristics to related MAs in other insects. An extensive search for this domain outside of Insecta confirms that the MAs are restricted to insects.

  14. Identification, modeling, and characterization studies of Tetrahymena thermophila myosin FERM domains suggests a conserved core fold but functional differences.

    Science.gov (United States)

    Martin, Che L; Singh, Shaneen M

    2015-11-01

    Myosins (MYO) define a superfamily of motor proteins which facilitate movement along cytoskeletal actin filaments in an ATP-dependent manner. To date, over 30 classes of myosin have been defined that vary in their roles and distribution across different taxa. The multidomain tail of myosin is responsible for the observed functional differences in different myosin classes facilitating differential binding to different cargos. One domain found in this region, the FERM domain, is found in several diverse proteins and is involved in many biological functions ranging from cell adhesion and actin-driven cytoskeleton assembly to cell signaling. Recently, new classes of unconventional myosin have been identified in Tetrahymena thermophila. In this study, we have identified, modeled, and characterized eight FERM domains from the unconventional T. thermophila myosins as their complete functional MyTH4-FERM cassettes. Our results reveal notable sequence, structural, and electrostatic differences between T. thermophila and other characterized FERM domains. Specifically, T. thermophila FERM domains contain helical inserts or extensions, which contribute to significant differences in surface electrostatic profiles of T. thermophila myosin FERMs when compared to the conventional FERM domains. Analyses of the modeled domains reveal differences in key functional residues as well as phosphoinositide-binding signatures and affinities. The work presented here broadens the scope of our understanding of myosin classes and their inherent functions, and provides a platform for experimentalists to design rational experimental studies to test the functional roles for T. thermophila myosins.

  15. Curcumin interaction with copper and iron suggests one possible mechanism of action in Alzheimer's disease animal models.

    Science.gov (United States)

    Baum, Larry; Ng, Alex

    2004-08-01

    Curcumin is a polyphenolic diketone from turmeric. Because of its anti-oxidant and anti-inflammatory effects, it was tested in animal models of Alzheimer's disease, reducing levels of amyloid and oxidized proteins and preventing cognitive deficits. An alternative mechanism of these effects is metal chelation, which may reduce amyloid aggregation or oxidative neurotoxicity. Metals can induce Abeta aggregation and toxicity, and are concentrated in AD brain. Chelators desferrioxamine and clioquinol have exhibited anti-AD effects. Using spectrophotometry, we quantified curcumin affinity for copper, zinc, and iron ions. Zn2+ showed little binding, but each Cu2+ or Fe2+ ion appeared to bind at least two curcumin molecules. The interaction of curcumin with copper reached half-maximum at approximately 3-12 microM copper and exhibited positive cooperativity, with Kd1 approximately 10-60 microM and Kd2 approximately 1.3 microM (for binding of the first and second curcumin molecules, respectively). Curcumin-iron interaction reached half-maximum at approximately 2.5-5 microM iron and exhibited negative cooperativity, with Kd1 approximately 0.5-1.6 microM and Kd2 approximately 50-100 microM. Curcumin and its metabolites can attain these levels in vivo, suggesting physiological relevance. Since curcumin more readily binds the redox-active metals iron and copper than redox-inactive zinc, curcumin might exert a net protective effect against Abeta toxicity or might suppress inflammatory damage by preventing metal induction of NF-kappaB.

  16. Research Suggestions for Students

    Science.gov (United States)

    Holland, John L.

    1974-01-01

    Describes how to perform accurate research. Also includes suggestions for specific research projects under such headings as: (1) types; (2) environments; (3) interactions; (4) classification; (5) hexagonal model; and (6) differentiation. (HMV)

  17. Stochastic modelling suggests that an elevated superoxide anion - hydrogen peroxide ratio can drive extravascular phagocyte transmigration by lamellipodium formation.

    Science.gov (United States)

    Kundu, Siddhartha

    2016-10-21

    Chemotaxis, integrates diverse intra- and inter-cellular molecular processes into a purposeful patho-physiological response; the operatic rules of which, remain speculative. Here, I surmise, that superoxide anion induced directional motility, in a responding cell, results from a quasi pathway between the stimulus, surrounding interstitium, and its biochemical repertoire. The epochal event in the mounting of an inflammatory response, is the extravascular transmigration of a phagocyte competent cell towards the site of injury, secondary to the development of a lamellipodium. This stochastic-to-markovian process conversion, is initiated by the cytosolic-ROS of the damaged cell, but is maintained by the inverse association of a de novo generated pool of self-sustaining superoxide anions and sub-critical hydrogen peroxide levels. Whilst, the exponential rise of O2(.-) is secondary to the focal accumulation of higher order lipid raft-Rac1/2-actin oligomers; O2(.-) mediated inactivation and redistribution of ECSOD, accounts for the minimal concentration of H2O2 that the phagocyte experiences. The net result of this reciprocal association between ROS/ RNS members, is the prolonged perturbation and remodeling of the cytoskeleton and plasma membrane, a prelude to chemotactic migration. The manuscript also describes the significance of stochastic modeling, in the testing of plausible molecular hypotheses of observable phenomena in complex biological systems.

  18. Kinetic properties of mouse pancreatic lipase-related protein-2 suggest the mouse may not model human fat digestion.

    Science.gov (United States)

    Xiao, Xunjun; Ross, Leah E; Miller, Rita A; Lowe, Mark E

    2011-05-01

    Genetically engineered mice have been employed to understand the role of lipases in dietary fat digestion with the expectation that the results can be extrapolated to humans. However, little is known about the properties of mouse pancreatic triglyceride lipase (mPTL) and pancreatic lipase-related protein-2 (mPLRP2). In this study, both lipases were expressed in Pichia Pastoris GS115, purified to near homogeneity, and their properties were characterized. Mouse PTL displayed the kinetics typical of PTL from other species. Like mPTL, mPLRP2 exhibited strong activity against various triglycerides. In contrast to mPTL, mPLRP2 was not inhibited by increasing bile salt concentration. Colipase stimulated mPLRP2 activity 2- to 4-fold. Additionally, mPTL absolutely required colipase for absorption to a lipid interface, whereas mPLRP2 absorbed fully without colipase. mPLRP2 had full activity in the presence of BSA, whereas BSA completely inhibited mPTL unless colipase was present. All of these properties of mPLRP2 differ from the properties of human PLRP2 (hPLRP2). Furthermore, mPLRP2 appears capable of compensating for mPTL deficiency. These findings suggest that the molecular mechanisms of dietary fat digestion may be different in humans and mice. Thus, extrapolation of dietary fat digestion in mice to humans should be done with care.

  19. Economic Decision Model Suggests Total Shoulder Arthroplasty is Superior to Hemiarthroplasty in Young Patients with End-stage Shoulder Arthritis.

    Science.gov (United States)

    Bhat, Suneel B; Lazarus, Mark; Getz, Charles; Williams, Gerald R; Namdari, Surena

    2016-11-01

    Young patients with severe glenohumeral arthritis pose a challenging management problem for shoulder surgeons. Two controversial treatment options are total shoulder arthroplasty (TSA) and hemiarthroplasty. This study aims to characterize costs, as expressed by reimbursements for episodes of acute care, and outcomes associated with each treatment. We asked: for patients 30 to 50 years old with severe end-stage glenohumeral arthritis refractory to conservative management, (1) are more years of patient-derived satisfactory outcome by the Neer criteria and quality-adjusted life-years (QALYs) achieved using a TSA or a hemiarthroplasty; (2) does a TSA or a hemiarthroplasty result in a greater number of revision procedures; and (3) does a TSA or a hemiarthroplasty result in greater associated costs to society? The incidence of glenohumeral arthritis among 30- to 50-year-old patients, outcomes, reoperation probabilities, and associated costs from TSA and hemiarthroplasty were derived from the literature. A Markov chain decision tree model was developed from these estimates with number of revisions, cost of management for patients to 70 years old as defined by reimbursement for acute-care episodes, years with "satisfactory" or "excellent" outcome by the modified Neer criteria, and QALYs gained as principle outcome measures. A Monte Carlo simulation was conducted with a cohort representing the at-risk population for shoulder arthritis between 30 and 50 years old in the United States. During the lifetime of a cohort of 5279 patients, hemiarthroplasty as the initial treatment resulted in 59,574 patient years of satisfactory or excellent results (11.29 per patient) and average QALYs gained of 6.55, whereas TSA as the initial treatment resulted in 85,969 patient years of satisfactory or excellent results (16.29 per patient) and average QALYs gained of 7.96. During the lifetime of a cohort of 5279 patients, a hemiarthroplasty as the initial treatment led to 2090 lifetime

  20. VNIR spectral modeling of Mars analogue rocks: first results

    Science.gov (United States)

    Pompilio, L.; Roush, T.; Pedrazzi, G.; Sgavetti, M.

    Knowledge regarding the surface composition of Mars and other bodies of the inner solar system is fundamental to understanding of their origin, evolution, and internal structures. Technological improvements of remote sensors and associated implications for planetary studies have encouraged increased laboratory and field spectroscopy research to model the spectral behavior of terrestrial analogues for planetary surfaces. This approach has proven useful during Martian surface and orbital missions, and petrologic studies of Martian SNC meteorites. Thermal emission data were used to suggest two lithologies occurring on Mars surface: basalt with abundant plagioclase and clinopyroxene and andesite, dominated by plagioclase and volcanic glass [1,2]. Weathered basalt has been suggested as an alternative to the andesite interpretation [3,4]. Orbital VNIR spectral imaging data also suggest the crust is dominantly basaltic, chiefly feldspar and pyroxene [5,6]. A few outcrops of ancient crust have higher concentrations of olivine and low-Ca pyroxene, and have been interpreted as cumulates [6]. Based upon these orbital observations future lander/rover missions can be expected to encounter particulate soils, rocks, and rock outcrops. Approaches to qualitative and quantitative analysis of remotely-acquired spectra have been successfully used to infer the presence and abundance of minerals and to discover compositionally associated spectral trends [7-9]. Both empirical [10] and mathematical [e.g. 11-13] methods have been applied, typically with full compositional knowledge, to chiefly particulate samples and as a result cannot be considered as objective techniques for predicting the compositional information, especially for understanding the spectral behavior of rocks. Extending the compositional modeling efforts to include more rocks and developing objective criteria in the modeling are the next required steps. This is the focus of the present investigation. We present results of

  1. Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of autism spectrum disorders.

    Directory of Open Access Journals (Sweden)

    Claire S Leblond

    2012-02-01

    Full Text Available Autism spectrum disorders (ASD are a heterogeneous group of neurodevelopmental disorders with a complex inheritance pattern. While many rare variants in synaptic proteins have been identified in patients with ASD, little is known about their effects at the synapse and their interactions with other genetic variations. Here, following the discovery of two de novo SHANK2 deletions by the Autism Genome Project, we identified a novel 421 kb de novo SHANK2 deletion in a patient with autism. We then sequenced SHANK2 in 455 patients with ASD and 431 controls and integrated these results with those reported by Berkel et al. 2010 (n = 396 patients and n = 659 controls. We observed a significant enrichment of variants affecting conserved amino acids in 29 of 851 (3.4% patients and in 16 of 1,090 (1.5% controls (P = 0.004, OR = 2.37, 95% CI = 1.23-4.70. In neuronal cell cultures, the variants identified in patients were associated with a reduced synaptic density at dendrites compared to the variants only detected in controls (P = 0.0013. Interestingly, the three patients with de novo SHANK2 deletions also carried inherited CNVs at 15q11-q13 previously associated with neuropsychiatric disorders. In two cases, the nicotinic receptor CHRNA7 was duplicated and in one case the synaptic translation repressor CYFIP1 was deleted. These results strengthen the role of synaptic gene dysfunction in ASD but also highlight the presence of putative modifier genes, which is in keeping with the "multiple hit model" for ASD. A better knowledge of these genetic interactions will be necessary to understand the complex inheritance pattern of ASD.

  2. Modeling Pathogenic Mutations of Human Twinkle in Drosophila Suggests an Apoptosis Role in Response to Mitochondrial Defects

    Science.gov (United States)

    Sanchez-Martinez, Alvaro; Calleja, Manuel; Peralta, Susana; Matsushima, Yuichi; Hernandez-Sierra, Rosana; Whitworth, Alexander J.; Kaguni, Laurie S.; Garesse, Rafael

    2012-01-01

    The human gene C10orf2 encodes the mitochondrial replicative DNA helicase Twinkle, mutations of which are responsible for a significant fraction of cases of autosomal dominant progressive external ophthalmoplegia (adPEO), a human mitochondrial disease caused by defects in intergenomic communication. We report the analysis of orthologous mutations in the Drosophila melanogaster mitochondrial DNA (mtDNA) helicase gene, d-mtDNA helicase. Increased expression of wild type d-mtDNA helicase using the UAS-GAL4 system leads to an increase in mtDNA copy number throughout adult life without any noteworthy phenotype, whereas overexpression of d-mtDNA helicase containing the K388A mutation in the helicase active site results in a severe depletion of mtDNA and a lethal phenotype. Overexpression of two d-mtDNA helicase variants equivalent to two human adPEO mutations shows differential effects. The A442P mutation exhibits a dominant negative effect similar to that of the active site mutant. In contrast, overexpression of d-mtDNA helicase containing the W441C mutation results in a slight decrease in mtDNA copy number during the third instar larval stage, and a moderate decrease in life span in the adult population. Overexpression of d-mtDNA helicase containing either the K388A or A442P mutations causes a mitochondrial oxidative phosphorylation (OXPHOS) defect that significantly reduces cell proliferation. The mitochondrial impairment caused by these mutations promotes apoptosis, arguing that mitochondria regulate programmed cell death in Drosophila. Our study of d-mtDNA helicase overexpression provides a tractable Drosophila model for understanding the cellular and molecular effects of human adPEO mutations. PMID:22952820

  3. How primordial is the structure of comet 67P?. Combined collisional and dynamical models suggest a late formation

    Science.gov (United States)

    Jutzi, M.; Benz, W.; Toliou, A.; Morbidelli, A.; Brasser, R.

    2017-01-01

    Context. There is an active debate about whether the properties of comets as observed today are primordial or, alternatively, if they are a result of collisional evolution or other processes. Aims: We investigate the effects of collisions on a comet with a structure like 67P/Churyumov-Gerasimenko (67P). We develop scaling laws for the critical specific impact energies Qreshape required for a significant shape alteration. These are then used in simulations of the combined dynamical and collisional evolution of comets in order to study the survival probability of a primordially formed object with a shape like 67P. Although the focus of this work is on a structure of this kind, the analysis is also performed for more generic bi-lobe shapes, for which we define the critical specific energy Qbil. The simulation outcomes are also analyzed in terms of impact heating and the evolution of the porosity. Methods: The effects of impacts on comet 67P are studied using a state-of-the-art smooth particle hydrodynamics shock physics code. In the 3D simulations, a publicly available shape model of 67P is applied and a range of impact conditions and material properties are investigated. The resulting critical specific impact energy Qreshape (as well as Qbil for generic bi-lobe shapes) defines a minimal projectile size which is used to compute the number of shape-changing collisions in a set of dynamical simulations. These simulations follow the dispersion of the trans-Neptunian disk during the giant planet instability, the formation of a scattered disk, and produce 87 objects that penetrate into the inner solar system with orbits consistent with the observed JFC population. The collisional evolution before the giant planet instability is not considered here. Hence, our study is conservative in its estimation of the number of collisions. Results: We find that in any scenario considered here, comet 67P would have experienced a significant number of shape-changing collisions, if it

  4. RESULTS OF INTERBANK EXCHANGE RATES FORECASTING USING STATE SPACE MODEL

    Directory of Open Access Journals (Sweden)

    Muhammad Kashif

    2008-07-01

    Full Text Available This study evaluates the performance of three alternative models for forecasting daily interbank exchange rate of U.S. dollar measured in Pak rupees. The simple ARIMA models and complex models such as GARCH-type models and a state space model are discussed and compared. Four different measures are used to evaluate the forecasting accuracy. The main result is the state space model provides the best performance among all the models.

  5. Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals

    Directory of Open Access Journals (Sweden)

    Warren Wesley C

    2008-07-01

    Full Text Available Abstract Background Vertebrate alpha (α- and beta (β-globin gene families exemplify the way in which genomes evolve to produce functional complexity. From tandem duplication of a single globin locus, the α- and β-globin clusters expanded, and then were separated onto different chromosomes. The previous finding of a fossil β-globin gene (ω in the marsupial α-cluster, however, suggested that duplication of the α-β cluster onto two chromosomes, followed by lineage-specific gene loss and duplication, produced paralogous α- and β-globin clusters in birds and mammals. Here we analyse genomic data from an egg-laying monotreme mammal, the platypus (Ornithorhynchus anatinus, to explore haemoglobin evolution at the stem of the mammalian radiation. Results The platypus α-globin cluster (chromosome 21 contains embryonic and adult α- globin genes, a β-like ω-globin gene, and the GBY globin gene with homology to cytoglobin, arranged as 5'-ζ-ζ'-αD-α3-α2-α1-ω-GBY-3'. The platypus β-globin cluster (chromosome 2 contains single embryonic and adult globin genes arranged as 5'-ε-β-3'. Surprisingly, all of these globin genes were expressed in some adult tissues. Comparison of flanking sequences revealed that all jawed vertebrate α-globin clusters are flanked by MPG-C16orf35 and LUC7L, whereas all bird and mammal β-globin clusters are embedded in olfactory genes. Thus, the mammalian α- and β-globin clusters are orthologous to the bird α- and β-globin clusters respectively. Conclusion We propose that α- and β-globin clusters evolved from an ancient MPG-C16orf35-α-β-GBY-LUC7L arrangement 410 million years ago. A copy of the original β (represented by ω in marsupials and monotremes was inserted into an array of olfactory genes before the amniote radiation (>315 million years ago, then duplicated and diverged to form orthologous clusters of β-globin genes with different expression profiles in different lineages.

  6. Novel mouse models of oculopharyngeal muscular dystrophy (OPMD) reveal early onset mitochondrial defects and suggest loss of PABPN1 may contribute to pathology.

    Science.gov (United States)

    Vest, Katherine E; Phillips, Brittany L; Banerjee, Ayan; Apponi, Luciano H; Dammer, Eric B; Xu, Weiting; Zheng, Dinghai; Yu, Julia; Tian, Bin; Pavlath, Grace K; Corbett, Anita H

    2017-09-01

    Oculopharyngeal muscular dystrophy (OPMD) is a late onset disease caused by polyalanine expansion in the poly(A) binding protein nuclear 1 (PABPN1). Several mouse models have been generated to study OPMD; however, most of these models have employed transgenic overexpression of alanine-expanded PABPN1. These models do not recapitulate the OPMD patient genotype and PABPN1 overexpression could confound molecular phenotypes. We have developed a knock-in mouse model of OPMD (Pabpn1+/A17) that contains one alanine-expanded Pabpn1 allele under the control of the native promoter and one wild-type Pabpn1 allele. This mouse is the closest available genocopy of OPMD patients. We show that Pabpn1+/A17 mice have a mild myopathic phenotype in adult and aged animals. We examined early molecular and biochemical phenotypes associated with expressing native levels of A17-PABPN1 and detected shorter poly(A) tails, modest changes in poly(A) signal (PAS) usage, and evidence of mitochondrial damage in these mice. Recent studies have suggested that a loss of PABPN1 function could contribute to muscle pathology in OPMD. To investigate a loss of function model of pathology, we generated a heterozygous Pabpn1 knock-out mouse model (Pabpn1+/Δ). Like the Pabpn1+/A17 mice, Pabpn1+/Δ mice have mild histologic defects, shorter poly(A) tails, and evidence of mitochondrial damage. However, the phenotypes detected in Pabpn1+/Δ mice only partially overlap with those detected in Pabpn1+/A17 mice. These results suggest that loss of PABPN1 function could contribute to but may not completely explain the pathology detected in Pabpn1+/A17 mice. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  7. Low Energy Atomic Models Suggesting a Pilus Structure that could Account for Electrical Conductivity of Geobacter sulfurreducens Pili.

    Science.gov (United States)

    Xiao, Ke; Malvankar, Nikhil S; Shu, Chuanjun; Martz, Eric; Lovley, Derek R; Sun, Xiao

    2016-03-22

    The metallic-like electrical conductivity of Geobacter sulfurreducens pili has been documented with multiple lines of experimental evidence, but there is only a rudimentary understanding of the structural features which contribute to this novel mode of biological electron transport. In order to determine if it was feasible for the pilin monomers of G. sulfurreducens to assemble into a conductive filament, theoretical energy-minimized models of Geobacter pili were constructed with a previously described approach, in which pilin monomers are assembled using randomized structural parameters and distance constraints. The lowest energy models from a specific group of predicted structures lacked a central channel, in contrast to previously existing pili models. In half of the no-channel models the three N-terminal aromatic residues of the pilin monomer are arranged in a potentially electrically conductive geometry, sufficiently close to account for the experimentally observed metallic like conductivity of the pili that has been attributed to overlapping pi-pi orbitals of aromatic amino acids. These atomic resolution models capable of explaining the observed conductive properties of Geobacter pili are a valuable tool to guide further investigation of the metallic-like conductivity of the pili, their role in biogeochemical cycling, and applications in bioenergy and bioelectronics.

  8. Bifurcation Analysis of an Existing Mathematical Model Reveals Novel Treatment Strategies and Suggests Potential Cure for Type 1 Diabetes

    DEFF Research Database (Denmark)

    Nielsen, Kenneth Hagde Mandrup; Ottesen, Johnny T.; Pociot, Flemming

    2014-01-01

    Type 1 diabetes is a disease with serious personal and socioeconomic consequences that has attracted the attention of modellers recently. But as models of this disease tend to be complicated, there has been only limited mathematical analysis to date. Here we address this problem by providing...... a bifurcation analysis of a previously published mathematical model for the early stages of type 1 diabetes in diabetes-prone NOD mice, which is based on the data available in the literature. We also show positivity and the existence of a family of attracting trapping regions in the positive 5D cone, converging...... towards a smaller trapping region, which is the intersection over the family. All these trapping regions are compact sets, and thus, practical weak persistence is guaranteed. We conclude our analysis by proposing 4 novel treatment strategies: increasing the phagocytic ability of resting macrophages...

  9. Didactical suggestion for a Dynamic Hybrid Intelligent e-Learning Environment (DHILE) applying the PENTHA ID Model

    Science.gov (United States)

    dall'Acqua, Luisa

    2011-08-01

    The teleology of our research is to propose a solution to the request of "innovative, creative teaching", proposing a methodology to educate creative Students in a society characterized by multiple reference points and hyper dynamic knowledge, continuously subject to reviews and discussions. We apply a multi-prospective Instructional Design Model (PENTHA ID Model), defined and developed by our research group, which adopts a hybrid pedagogical approach, consisting of elements of didactical connectivism intertwined with aspects of social constructivism and enactivism. The contribution proposes an e-course structure and approach, applying the theoretical design principles of the above mentioned ID Model, describing methods, techniques, technologies and assessment criteria for the definition of lesson modes in an e-course.

  10. Low Level Evidence Suggests That Librarian-Led Instruction in Evidence Based Practice is Effective Regardless of Instructional Model

    Directory of Open Access Journals (Sweden)

    Lindsay J. Alcock

    2017-06-01

    Full Text Available A Review of: Swanberg, S. M., Dennison, C. C., Farrell, A., Machel, V., Marton, C., O'Brien, K. K., … & Holyoke, A. N. (2016. Instructional methods used by health sciences librarians to teach evidence-based practice (EBP: a systematic review. Journal of the Medical Library Association: JMLA, 104(3, 197-208. http://dx.doi.org/10.3163/1536-5050.104.3.004 Abstract Objective – To determine both the instructional methods and their effectiveness in teaching evidence based practice (EBP by librarians in health sciences curricula. Design – Systematic review. Setting – A total of 16 databases, Google Scholar, and MLA Annual Meeting abstracts. Subjects – There were 27 studies identified through a systematic literature search. Methods – An exhaustive list of potential articles was gathered through searching 16 online databases, Google Scholar, and MLA Annual Conference abstracts. Inclusion and exclusion criteria were identified to inform the literature search and determine article eligibility. Duplicates were removed and the remaining search results were divided into sets and assigned to two reviewers who screened first by title/abstract and then by full-text. A third reviewer addressed disagreement in article inclusion. Data extraction, using a validated method described by Koufogiannakis and Wiebe (2006, and critical appraisal, using the Glasgow checklist (1999, were performed concurrently. Main Results – After removal of duplicates 30,043 articles were identified for initial title/abstract screening. Of the 637 articles assessed for full-text screening 26 articles and 1 conference proceeding ultimately met all eligibility criteria. There was no meta-analysis included in the synthesis. There were 16 articles published in library and information science journals and 10 in health sciences journals. Of those studies, 22 were conducted in the United States. A wide range of user groups was identified as participants in the studies with medical

  11. Comparative modeling and molecular dynamics suggest high carboxylase activity of the Cyanobium sp. CACIAM14 RbcL protein.

    Science.gov (United States)

    Siqueira, Andrei Santos; Lima, Alex Ranieri Jerônimo; Dall'Agnol, Leonardo Teixeira; de Azevedo, Juliana Simão Nina; da Silva Gonçalves Vianez, João Lídio; Gonçalves, Evonnildo Costa

    2016-03-01

    Rubisco catalyzes the first step reaction in the carbon fixation pathway, bonding atmospheric CO2/O2 to ribulose 1,5-bisphosphate; it is therefore considered one of the most important enzymes in the biosphere. Genetic modifications to increase the carboxylase activity of rubisco are a subject of great interest to agronomy and biotechnology, since this could increase the productivity of biomass in plants, algae and cyanobacteria and give better yields in crops and biofuel production. Thus, the aim of this study was to characterize in silico the catalytic domain of the rubisco large subunit (rbcL gene) of Cyanobium sp. CACIAM14, and identify target sites to improve enzyme affinity for ribulose 1,5-bisphosphate. A three-dimensional model was built using MODELLER 9.14, molecular dynamics was used to generate a 100 ns trajectory by AMBER12, and the binding free energy was calculated using MM-PBSA, MM-GBSA and SIE methods with alanine scanning. The model obtained showed characteristics of form-I rubisco, with 15 beta sheets and 19 alpha helices, and maintained the highly conserved catalytic site encompassing residues Lys175, Lys177, Lys201, Asp203, and Glu204. The binding free energy of the enzyme-substrate complexation of Cyanobium sp. CACIAM14 showed values around -10 kcal mol(-1) using the SIE method. The most important residues for the interaction with ribulose 1,5-bisphosphate were Arg295 followed by Lys334. The generated model was successfully validated, remaining stable during the whole simulation, and demonstrated characteristics of enzymes with high carboxylase activity. The binding analysis revealed candidates for directed mutagenesis sites to improve rubisco's affinity.

  12. Analysis and modeling of heat-labile enterotoxins of Escherichia coli suggests a novel space with insights into receptor preference.

    Science.gov (United States)

    Krishna Raja, M; Ghosh, Asit Ranjan; Vino, S; Sajitha Lulu, S

    2015-01-01

    Features of heat-labile enterotoxins of Escherichia coli which make them fit to use as novel receptors for antidiarrheals are not completely explored. Data-set of 14 different serovars of enterotoxigenic Escherichia coli producing heat-labile toxins were taken from NCBI Genbank database and used in the study. Sequence analysis showed mutations in different subunits and also at their interface residues. As these toxins lack crystallography structures, homology modeling using Modeller 9.11 led to the structural approximation for the E. coli producing heat-labile toxins. Interaction of modeled toxin subunits with proanthocyanidin, an antidiarrheal showed several strong hydrogen bonding interactions at the cost of minimized energy. The hits were subsequently characterized by molecular dynamics simulation studies to monitor their binding stabilities. This study looks into novel space where the ligand can choose the receptor preference not as a whole but as an individual subunit. Mutation at interface residues and interaction among subunits along with the binding of ligand to individual subunits would help to design a non-toxic labile toxin and also to improve the therapeutics.

  13. Synthetic biology between challenges and risks: suggestions for a model of governance and a regulatory framework, based on fundamental rights.

    Science.gov (United States)

    Colussi, Ilaria Anna

    2013-01-01

    This paper deals with the emerging synthetic biology, its challenges and risks, and tries to design a model for the governance and regulation of the field. The model is called of "prudent vigilance" (inspired by the report about synthetic biology, drafted by the U.S. Presidential Commission on Bioethics, 2010), and it entails (a) an ongoing and periodically revised process of assessment and management of all the risks and concerns, and (b) the adoption of policies - taken through "hard law" and "soft law" sources - that are based on the principle of proportionality (among benefits and risks), on a reasonable balancing between different interests and rights at stake, and are oriented by a constitutional frame, which is represented by the protection of fundamental human rights emerging in the field of synthetic biology (right to life, right to health, dignity, freedom of scientific research, right to environment). After the theoretical explanation of the model, its operability is "checked", by considering its application with reference to only one specific risk brought up by synthetic biology - biosecurity risk, i.e. the risk of bioterrorism.

  14. Data-driven honeybee antennal lobe model suggests how stimulus-onset asynchrony can aid odour segregation.

    Science.gov (United States)

    Nowotny, Thomas; Stierle, Jacob S; Galizia, C Giovanni; Szyszka, Paul

    2013-11-01

    Insects have a remarkable ability to identify and track odour sources in multi-odour backgrounds. Recent behavioural experiments show that this ability relies on detecting millisecond stimulus asynchronies between odourants that originate from different sources. Honeybees, Apis mellifera, are able to distinguish mixtures where both odourants arrive at the same time (synchronous mixtures) from those where odourant onsets are staggered (asynchronous mixtures) down to an onset delay of only 6ms. In this paper we explore this surprising ability in a model of the insects' primary olfactory brain area, the antennal lobe. We hypothesize that a winner-take-all inhibitory network of local neurons in the antennal lobe has a symmetry-breaking effect, such that the response pattern in projection neurons to an asynchronous mixture is different from the response pattern to the corresponding synchronous mixture for an extended period of time beyond the initial odourant onset where the two mixture conditions actually differ. The prolonged difference between response patterns to synchronous and asynchronous mixtures could facilitate odoursegregation in downstream circuits of the olfactory pathway. We present a detailed data-driven model of the bee antennal lobe that reproduces a large data set of experimentally observed physiological odour responses, successfully implements the hypothesised symmetry-breaking mechanism and so demonstrates that this mechanism is consistent with our current knowledge of the olfactory circuits in the bee brain. This article is part of a Special Issue entitled Neural Coding 2012.

  15. Modeling of the human rhinovirus C capsid suggests a novel topography with insights on receptor preference and immunogenicity.

    Science.gov (United States)

    Basta, Holly A; Sgro, Jean-Yves; Palmenberg, Ann C

    2014-01-05

    Features of human rhinovirus (RV)-C virions that allow them to use novel cell receptors and evade immune responses are unknown. Unlike the RV-A+B, these isolates cannot be propagated in typical culture systems or grown for structure studies. Comparative sequencing, I-TASSER, MODELLER, ROBETTA, and refined alignment techniques led to a structural approximation for C15 virions, based on the extensive, resolved RV-A+B datasets. The model predicts that all RV-C VP1 proteins are shorter by 21 residues relative to the RV-A, and 35 residues relative to the RV-B, effectively shaving the RV 5-fold plateau from the particle. There are major alterations in VP1 neutralizing epitopes and the structural determinants for ICAM-1 and LDLR receptors. The VP2 and VP3 elements are similar among all RV, but the loss of sequence "words" contributing Nim1ab has increased the apparent selective pressure among the RV-C to fix mutations elsewhere in the VP1, creating a possible compensatory epitope.

  16. SOMO (SOlution MOdeler) differences between X-Ray- and NMR-derived bead models suggest a role for side chain flexibility in protein hydrodynamics.

    Science.gov (United States)

    Rai, Nithin; Nöllmann, Marcelo; Spotorno, Bruno; Tassara, Giovanni; Byron, Olwyn; Rocco, Mattia

    2005-05-01

    Reduced numbers of frictional/scattering centers are essential for tractable hydrodynamic and small-angle scattering data modeling. We present a method for generating medium-resolution models from the atomic coordinates of proteins, basically by using two nonoverlapping spheres of differing radii per residue. The computed rigid-body hydrodynamic parameters of BPTI, RNase A, and lysozyme models were compared with a large database of critically assessed experimental values. Overall, very good results were obtained, but significant discrepancies between X-ray- and NMR-derived models were found. Interestingly, they could be accounted for by properly considering the extent to which highly mobile surface side chains differently affect translational/rotational properties. Models of larger structures, such as fibrinogen fragment D and citrate synthase, also produced consistent results. Foremost among this method's potential applications is the overall conformation and dynamics of modular/multidomain proteins and of supramolecular complexes. The possibility of merging data from high- and low-resolution structures greatly expands its scope.

  17. In silico modeling of Itk activation kinetics in thymocytes suggests competing positive and negative IP4 mediated feedbacks increase robustness.

    Directory of Open Access Journals (Sweden)

    Sayak Mukherjee

    Full Text Available The inositol-phosphate messenger inositol(1,3,4,5tetrakisphosphate (IP4 is essential for thymocyte positive selection by regulating plasma-membrane association of the protein tyrosine kinase Itk downstream of the T cell receptor (TCR. IP4 can act as a soluble analog of the phosphoinositide 3-kinase (PI3K membrane lipid product phosphatidylinositol(3,4,5trisphosphate (PIP3. PIP3 recruits signaling proteins such as Itk to cellular membranes by binding to PH and other domains. In thymocytes, low-dose IP4 binding to the Itk PH domain surprisingly promoted and high-dose IP4 inhibited PIP3 binding of Itk PH domains. However, the mechanisms that underlie the regulation of membrane recruitment of Itk by IP4 and PIP3 remain unclear. The distinct Itk PH domain ability to oligomerize is consistent with a cooperative-allosteric mode of IP4 action. However, other possibilities cannot be ruled out due to difficulties in quantitatively measuring the interactions between Itk, IP4 and PIP3, and in generating non-oligomerizing Itk PH domain mutants. This has hindered a full mechanistic understanding of how IP4 controls Itk function. By combining experimentally measured kinetics of PLCγ1 phosphorylation by Itk with in silico modeling of multiple Itk signaling circuits and a maximum entropy (MaxEnt based computational approach, we show that those in silico models which are most robust against variations of protein and lipid expression levels and kinetic rates at the single cell level share a cooperative-allosteric mode of Itk regulation by IP4 involving oligomeric Itk PH domains at the plasma membrane. This identifies MaxEnt as an excellent tool for quantifying robustness for complex TCR signaling circuits and provides testable predictions to further elucidate a controversial mechanism of PIP3 signaling.

  18. Modelling of human low frequency sound localization acuity demonstrates dominance of spatial variation of interaural time difference and suggests uniform just-noticeable differences in interaural time difference.

    Directory of Open Access Journals (Sweden)

    Rosanna C G Smith

    Full Text Available Sound source localization is critical to animal survival and for identification of auditory objects. We investigated the acuity with which humans localize low frequency, pure tone sounds using timing differences between the ears. These small differences in time, known as interaural time differences or ITDs, are identified in a manner that allows localization acuity of around 1° at the midline. Acuity, a relative measure of localization ability, displays a non-linear variation as sound sources are positioned more laterally. All species studied localize sounds best at the midline and progressively worse as the sound is located out towards the side. To understand why sound localization displays this variation with azimuthal angle, we took a first-principles, systemic, analytical approach to model localization acuity. We calculated how ITDs vary with sound frequency, head size and sound source location for humans. This allowed us to model ITD variation for previously published experimental acuity data and determine the distribution of just-noticeable differences in ITD. Our results suggest that the best-fit model is one whereby just-noticeable differences in ITDs are identified with uniform or close to uniform sensitivity across the physiological range. We discuss how our results have several implications for neural ITD processing in different species as well as development of the auditory system.

  19. The alpha-fetoprotein knock-out mouse model suggests that parental behavior is sexually differentiated under the influence of prenatal estradiol.

    Science.gov (United States)

    Keller, Matthieu; Pawluski, Jodi L; Brock, Olivier; Douhard, Quentin; Bakker, Julie

    2010-04-01

    In rodent species, sexual differentiation of the brain for many reproductive processes depends largely on estradiol. This was recently confirmed again by using the alpha-fetoprotein knockout (AFP-KO) mouse model, which lacks the protective actions of alpha-fetoprotein against maternal estradiol and as a result represents a good model to determine the contribution of prenatal estradiol to the sexual differentiation of the brain and behavior. Female AFP-KO mice were defeminized and masculinized with regard to their neuroendocrine responses as well as sexual behavior. Since parental behavior is also strongly sexually differentiated in mice, we used the AFP-KO mouse model here to ask whether parental responses are differentiated prenatally under the influence of estradiol. It was found that AFP-KO females showed longer latencies to retrieve pups to the nest and also exhibited lower levels of crouching over the pups in the nest in comparison to WT females. In fact, they resembled males (WT and AFP-KO). Other measures of maternal behavior, for example the incidence of infanticide, tended to be higher in AFP-KO females than in WT females but this increase failed to reach statistical significance. The deficits observed in parental behavior of AFP-KO females could not be explained by any changes in olfactory function, novelty recognition or anxiety. Thus our results suggest that prenatal estradiol defeminizes the parental brain in mice.

  20. Distribution of dipeptide repeat proteins in cellular models and C9orf72 mutation cases suggests link to transcriptional silencing.

    Science.gov (United States)

    Schludi, Martin H; May, Stephanie; Grässer, Friedrich A; Rentzsch, Kristin; Kremmer, Elisabeth; Küpper, Clemens; Klopstock, Thomas; Arzberger, Thomas; Edbauer, Dieter

    2015-10-01

    A massive expansion of a GGGGCC repeat upstream of the C9orf72 coding region is the most common known cause of amyotrophic lateral sclerosis and frontotemporal dementia. Despite its intronic localization and lack of a canonical start codon, both strands are translated into aggregating dipeptide repeat (DPR) proteins: poly-GA, poly-GP, poly-GR, poly-PR and poly-PA. To address conflicting findings on the predominant toxicity of the different DPR species in model systems, we compared the expression pattern of the DPR proteins in rat primary neurons and postmortem brain and spinal cord of C9orf72 mutation patients. Only poly-GA overexpression closely mimicked the p62-positive neuronal cytoplasmic inclusions commonly observed for all DPR proteins in patients. In contrast, overexpressed poly-GR and poly-PR formed nucleolar p62-negative inclusions. In patients, most of the less common neuronal intranuclear DPR inclusions were para-nucleolar and p62 positive. Neuronal nucleoli in C9orf72 cases showed normal size and morphology regardless of the presence of poly-GR and poly-PR inclusions arguing against widespread nucleolar stress, reported in cellular models. Colocalization of para-nucleolar DPR inclusions with heterochromatin and a marker of transcriptional repression (H3K9me2) indicates a link to gene transcription. In contrast, we detected numerous intranuclear DPR inclusions not associated with nucleolar structures in ependymal and subependymal cells. In patients, neuronal inclusions of poly-GR, poly-GP and the poly-GA interacting protein Unc119 were less abundant than poly-GA inclusions, but showed similar regional and subcellular distribution. Regardless of neurodegeneration, all inclusions were most abundant in neocortex, hippocampus and thalamus, with few inclusions in brain stem and spinal cord. In the granular cell layer of the cerebellum, poly-GA and Unc119 inclusions were significantly more abundant in cases with FTLD than in cases with MND and FTLD/MND. Poly

  1. Expression of venom gene homologs in diverse python tissues suggests a new model for the evolution of snake venom.

    Science.gov (United States)

    Reyes-Velasco, Jacobo; Card, Daren C; Andrew, Audra L; Shaney, Kyle J; Adams, Richard H; Schield, Drew R; Casewell, Nicholas R; Mackessy, Stephen P; Castoe, Todd A

    2015-01-01

    Snake venom gene evolution has been studied intensively over the past several decades, yet most previous studies have lacked the context of complete snake genomes and the full context of gene expression across diverse snake tissues. We took a novel approach to studying snake venom evolution by leveraging the complete genome of the Burmese python, including information from tissue-specific patterns of gene expression. We identified the orthologs of snake venom genes in the python genome, and conducted detailed analysis of gene expression of these venom homologs to identify patterns that differ between snake venom gene families and all other genes. We found that venom gene homologs in the python are expressed in many different tissues outside of oral glands, which illustrates the pitfalls of using transcriptomic data alone to define "venom toxins." We hypothesize that the python may represent an ancestral state prior to major venom development, which is supported by our finding that the expansion of venom gene families is largely restricted to highly venomous caenophidian snakes. Therefore, the python provides insight into biases in which genes were recruited for snake venom systems. Python venom homologs are generally expressed at lower levels, have higher variance among tissues, and are expressed in fewer organs compared with all other python genes. We propose a model for the evolution of snake venoms in which venom genes are recruited preferentially from genes with particular expression profile characteristics, which facilitate a nearly neutral transition toward specialized venom system expression.

  2. Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals.

    Science.gov (United States)

    Patel, Vidushi S; Cooper, Steven J B; Deakin, Janine E; Fulton, Bob; Graves, Tina; Warren, Wesley C; Wilson, Richard K; Graves, Jennifer A M

    2008-07-25

    Vertebrate alpha (alpha)- and beta (beta)-globin gene families exemplify the way in which genomes evolve to produce functional complexity. From tandem duplication of a single globin locus, the alpha- and beta-globin clusters expanded, and then were separated onto different chromosomes. The previous finding of a fossil beta-globin gene (omega) in the marsupial alpha-cluster, however, suggested that duplication of the alpha-beta cluster onto two chromosomes, followed by lineage-specific gene loss and duplication, produced paralogous alpha- and beta-globin clusters in birds and mammals. Here we analyse genomic data from an egg-laying monotreme mammal, the platypus (Ornithorhynchus anatinus), to explore haemoglobin evolution at the stem of the mammalian radiation. The platypus alpha-globin cluster (chromosome 21) contains embryonic and adult alpha- globin genes, a beta-like omega-globin gene, and the GBY globin gene with homology to cytoglobin, arranged as 5'-zeta-zeta'-alphaD-alpha3-alpha2-alpha1-omega-GBY-3'. The platypus beta-globin cluster (chromosome 2) contains single embryonic and adult globin genes arranged as 5'-epsilon-beta-3'. Surprisingly, all of these globin genes were expressed in some adult tissues. Comparison of flanking sequences revealed that all jawed vertebrate alpha-globin clusters are flanked by MPG-C16orf35 and LUC7L, whereas all bird and mammal beta-globin clusters are embedded in olfactory genes. Thus, the mammalian alpha- and beta-globin clusters are orthologous to the bird alpha- and beta-globin clusters respectively. We propose that alpha- and beta-globin clusters evolved from an ancient MPG-C16orf35-alpha-beta-GBY-LUC7L arrangement 410 million years ago. A copy of the original beta (represented by omega in marsupials and monotremes) was inserted into an array of olfactory genes before the amniote radiation (>315 million years ago), then duplicated and diverged to form orthologous clusters of beta-globin genes with different expression

  3. Some results regarding the comparison of the Earth's atmospheric models

    Directory of Open Access Journals (Sweden)

    Šegan S.

    2005-01-01

    Full Text Available In this paper we examine air densities derived from our realization of aeronomic atmosphere models based on accelerometer measurements from satellites in a low Earth's orbit (LEO. Using the adapted algorithms we derive comparison parameters. The first results concerning the adjustment of the aeronomic models to the total-density model are given.

  4. Some Econometric Results for the Blanchard-Watson Bubble Model

    DEFF Research Database (Denmark)

    Johansen, Soren; Lange, Theis

    The purpose of the present paper is to analyse a simple bubble model suggested by Blanchard and Watson. The model is defined by y(t) =s(t)¿y(t-1)+e(t), t=1,…,n, where s(t) is an i.i.d. binary variable with p=P(s(t)=1), independent of e(t) i.i.d. with mean zero and finite variance. We take ¿>1 so...

  5. Genetic and Functional Analyses of SHANK2 Mutations Suggest a Multiple Hit Model of Autism Spectrum Disorders

    Science.gov (United States)

    Leblond, Claire S.; Heinrich, Jutta; Delorme, Richard; Proepper, Christian; Betancur, Catalina; Huguet, Guillaume; Konyukh, Marina; Chaste, Pauline; Ey, Elodie; Rastam, Maria; Anckarsäter, Henrik; Nygren, Gudrun; Gillberg, I. Carina; Melke, Jonas; Toro, Roberto; Regnault, Beatrice; Fauchereau, Fabien; Mercati, Oriane; Lemière, Nathalie; Skuse, David; Poot, Martin; Holt, Richard; Monaco, Anthony P.; Järvelä, Irma; Kantojärvi, Katri; Vanhala, Raija; Curran, Sarah; Collier, David A.; Bolton, Patrick; Chiocchetti, Andreas; Klauck, Sabine M.; Poustka, Fritz; Freitag, Christine M.; Waltes, Regina; Kopp, Marnie; Duketis, Eftichia; Bacchelli, Elena; Minopoli, Fiorella; Ruta, Liliana; Battaglia, Agatino; Mazzone, Luigi; Maestrini, Elena; Sequeira, Ana F.; Oliveira, Barbara; Vicente, Astrid; Oliveira, Guiomar; Pinto, Dalila; Scherer, Stephen W.; Zelenika, Diana; Delepine, Marc; Lathrop, Mark; Bonneau, Dominique; Guinchat, Vincent; Devillard, Françoise; Assouline, Brigitte; Mouren, Marie-Christine; Leboyer, Marion; Gillberg, Christopher; Boeckers, Tobias M.; Bourgeron, Thomas

    2012-01-01

    Autism spectrum disorders (ASD) are a heterogeneous group of neurodevelopmental disorders with a complex inheritance pattern. While many rare variants in synaptic proteins have been identified in patients with ASD, little is known about their effects at the synapse and their interactions with other genetic variations. Here, following the discovery of two de novo SHANK2 deletions by the Autism Genome Project, we identified a novel 421 kb de novo SHANK2 deletion in a patient with autism. We then sequenced SHANK2 in 455 patients with ASD and 431 controls and integrated these results with those reported by Berkel et al. 2010 (n = 396 patients and n = 659 controls). We observed a significant enrichment of variants affecting conserved amino acids in 29 of 851 (3.4%) patients and in 16 of 1,090 (1.5%) controls (P = 0.004, OR = 2.37, 95% CI = 1.23–4.70). In neuronal cell cultures, the variants identified in patients were associated with a reduced synaptic density at dendrites compared to the variants only detected in controls (P = 0.0013). Interestingly, the three patients with de novo SHANK2 deletions also carried inherited CNVs at 15q11–q13 previously associated with neuropsychiatric disorders. In two cases, the nicotinic receptor CHRNA7 was duplicated and in one case the synaptic translation repressor CYFIP1 was deleted. These results strengthen the role of synaptic gene dysfunction in ASD but also highlight the presence of putative modifier genes, which is in keeping with the “multiple hit model” for ASD. A better knowledge of these genetic interactions will be necessary to understand the complex inheritance pattern of ASD. PMID:22346768

  6. The Effect of Bathymetric Filtering on Nearshore Process Model Results

    Science.gov (United States)

    2009-01-01

    Filtering on Nearshore Process Model Results 6. AUTHOR(S) Nathaniel Plant, Kacey L. Edwards, James M. Kaihatu, Jayaram Veeramony, Yuan-Huang L. Hsu...filtering on nearshore process model results Nathaniel G. Plant **, Kacey L Edwardsb, James M. Kaihatuc, Jayaram Veeramony b, Larry Hsu’’, K. Todd Holland...assimilation efforts that require this information. Published by Elsevier B.V. 1. Introduction Nearshore process models are capable of predicting

  7. Expertly validated models and phylogenetically-controlled analysis suggests responses to climate change are related to species traits in the order lagomorpha.

    Directory of Open Access Journals (Sweden)

    Katie Leach

    Full Text Available Climate change during the past five decades has impacted significantly on natural ecosystems, and the rate of current climate change is of great concern among conservation biologists. Species Distribution Models (SDMs have been used widely to project changes in species' bioclimatic envelopes under future climate scenarios. Here, we aimed to advance this technique by assessing future changes in the bioclimatic envelopes of an entire mammalian order, the Lagomorpha, using a novel framework for model validation based jointly on subjective expert evaluation and objective model evaluation statistics. SDMs were built using climatic, topographical, and habitat variables for all 87 lagomorph species under past and current climate scenarios. Expert evaluation and Kappa values were used to validate past and current models and only those deemed 'modellable' within our framework were projected under future climate scenarios (58 species. Phylogenetically-controlled regressions were used to test whether species traits correlated with predicted responses to climate change. Climate change is likely to impact more than two-thirds of lagomorph species, with leporids (rabbits, hares, and jackrabbits likely to undertake poleward shifts with little overall change in range extent, whilst pikas are likely to show extreme shifts to higher altitudes associated with marked range declines, including the likely extinction of Kozlov's Pika (Ochotona koslowi. Smaller-bodied species were more likely to exhibit range contractions and elevational increases, but showing little poleward movement, and fecund species were more likely to shift latitudinally and elevationally. Our results suggest that species traits may be important indicators of future climate change and we believe multi-species approaches, as demonstrated here, are likely to lead to more effective mitigation measures and conservation management. We strongly advocate studies minimising data gaps in our knowledge of

  8. Consultation and illness behaviour in response to symptoms: a comparison of models from different disciplinary frameworks and suggestions for future research directions.

    Science.gov (United States)

    Wyke, Sally; Adamson, Joy; Dixon, Diane; Hunt, Kate

    2013-06-01

    We all get ill and social scientific interest in how we respond - the study of illness behaviour - continues unabated. Existing models are useful, but have been developed and applied within disciplinary silos, resulting in wasted intellectual and empirical effort and an absence of accumulation of knowledge across disciplines. We present a critical review and detailed comparison of three process models of response to symptoms: the Illness Action Model, the Common Sense Model of the Self-Regulation of Health and Illness and the Network Episode Model. We suggest an integrated framework in which symptoms, responses and actions are simultaneously interpreted and evaluated in the light of accumulated knowledge and through interactions. Evaluation may be subconscious and is influenced by the extent to which the symptoms impose themselves, expectations of outcomes, the resources available and understanding of symptoms' salience and possible outcomes. Actions taken are part of a process of problem solving through which both individuals and their immediate social network seek to (re)achieve 'normality'. Response is also influenced by social structure (directly and indirectly), cultural expectations of health, the meaning of symptoms, and access to and understandings of the legitimate use of services. Changes in knowledge, in embodied state and in emotions can all be directly influential at any point. We do not underestimate the difficulty of operationalising an integrated framework at different levels of analysis. Attempts to do so will require us to move easily between disciplinary understandings to conduct prospective, longitudinal, research that uses novel methodologies to investigate response to symptoms in the context of affective as well as cognitive responses and interactions within social networks. While challenging such an approach would facilitate accumulation of knowledge across disciplines and enable movement beyond description to change in individual and

  9. Steel Containment Vessel Model Test: Results and Evaluation

    Energy Technology Data Exchange (ETDEWEB)

    Costello, J.F.; Hashimote, T.; Hessheimer, M.F.; Luk, V.K.

    1999-03-01

    A high pressure test of the steel containment vessel (SCV) model was conducted on December 11-12, 1996 at Sandia National Laboratories, Albuquerque, NM, USA. The test model is a mixed-scaled model (1:10 in geometry and 1:4 in shell thickness) of an improved Mark II boiling water reactor (BWR) containment. A concentric steel contact structure (CS), installed over the SCV model and separated at a nominally uniform distance from it, provided a simplified representation of a reactor shield building in the actual plant. The SCV model and contact structure were instrumented with strain gages and displacement transducers to record the deformation behavior of the SCV model during the high pressure test. This paper summarizes the conduct and the results of the high pressure test and discusses the posttest metallurgical evaluation results on specimens removed from the SCV model.

  10. A bio-inspired, computational model suggests velocity gradients of optic flow locally encode ordinal depth at surface borders and globally they encode self-motion.

    Science.gov (United States)

    Raudies, Florian; Ringbauer, Stefan; Neumann, Heiko

    2013-09-01

    Visual navigation requires the estimation of self-motion as well as the segmentation of objects from the background. We suggest a definition of local velocity gradients to compute types of self-motion, segment objects, and compute local properties of optical flow fields, such as divergence, curl, and shear. Such velocity gradients are computed as velocity differences measured locally tangent and normal to the direction of flow. Then these differences are rotated according to the local direction of flow to achieve independence of that direction. We propose a bio-inspired model for the computation of these velocity gradients for video sequences. Simulation results show that local gradients encode ordinal surface depth, assuming self-motion in a rigid scene or object motions in a nonrigid scene. For translational self-motion velocity, gradients can be used to distinguish between static and moving objects. The information about ordinal surface depth and self-motion can help steering control for visual navigation.

  11. Results from a new Cocks-Ashby style porosity model

    Science.gov (United States)

    Barton, Nathan

    2017-01-01

    A new porosity evolution model is described, along with preliminary results. The formulation makes use of a Cocks-Ashby style treatment of porosity kinetics that includes rate dependent flow in the mechanics of porosity growth. The porosity model is implemented in a framework that allows for a variety of strength models to be used for the matrix material, including ones with significant changes in rate sensitivity as a function of strain rate. Results of the effect of changing strain rate sensitivity on porosity evolution are shown. The overall constitutive model update involves the coupled solution of a system of nonlinear equations.

  12. Final model independent result of DAMA/LIBRA-phase1

    Energy Technology Data Exchange (ETDEWEB)

    Bernabei, R.; D' Angelo, S.; Di Marco, A. [Universita di Roma ' ' Tor Vergata' ' , Dipartimento di Fisica, Rome (Italy); INFN, sez. Roma ' ' Tor Vergata' ' , Rome (Italy); Belli, P. [INFN, sez. Roma ' ' Tor Vergata' ' , Rome (Italy); Cappella, F.; D' Angelo, A.; Prosperi, D. [Universita di Roma ' ' La Sapienza' ' , Dipartimento di Fisica, Rome (Italy); INFN, sez. Roma, Rome (Italy); Caracciolo, V.; Castellano, S.; Cerulli, R. [INFN, Laboratori Nazionali del Gran Sasso, Assergi (Italy); Dai, C.J.; He, H.L.; Kuang, H.H.; Ma, X.H.; Sheng, X.D.; Wang, R.G. [Chinese Academy, IHEP, Beijing (China); Incicchitti, A. [INFN, sez. Roma, Rome (Italy); Montecchia, F. [INFN, sez. Roma ' ' Tor Vergata' ' , Rome (Italy); Universita di Roma ' ' Tor Vergata' ' , Dipartimento di Ingegneria Civile e Ingegneria Informatica, Rome (Italy); Ye, Z.P. [Chinese Academy, IHEP, Beijing (China); University of Jing Gangshan, Jiangxi (China)

    2013-12-15

    The results obtained with the total exposure of 1.04 ton x yr collected by DAMA/LIBRA-phase1 deep underground at the Gran Sasso National Laboratory (LNGS) of the I.N.F.N. during 7 annual cycles (i.e. adding a further 0.17 ton x yr exposure) are presented. The DAMA/LIBRA-phase1 data give evidence for the presence of Dark Matter (DM) particles in the galactic halo, on the basis of the exploited model independent DM annual modulation signature by using highly radio-pure NaI(Tl) target, at 7.5{sigma} C.L. Including also the first generation DAMA/NaI experiment (cumulative exposure 1.33 ton x yr, corresponding to 14 annual cycles), the C.L. is 9.3{sigma} and the modulation amplitude of the single-hit events in the (2-6) keV energy interval is: (0.0112{+-}0.0012) cpd/kg/keV; the measured phase is (144{+-}7) days and the measured period is (0.998{+-}0.002) yr, values well in agreement with those expected for DM particles. No systematic or side reaction able to mimic the exploited DM signature has been found or suggested by anyone over more than a decade. (orig.)

  13. Results of the Marine Ice Sheet Model Intercomparison Project, MISMIP

    Directory of Open Access Journals (Sweden)

    F. Pattyn

    2012-05-01

    Full Text Available Predictions of marine ice-sheet behaviour require models that are able to robustly simulate grounding line migration. We present results of an intercomparison exercise for marine ice-sheet models. Verification is effected by comparison with approximate analytical solutions for flux across the grounding line using simplified geometrical configurations (no lateral variations, no effects of lateral buttressing. Unique steady state grounding line positions exist for ice sheets on a downward sloping bed, while hysteresis occurs across an overdeepened bed, and stable steady state grounding line positions only occur on the downward-sloping sections. Models based on the shallow ice approximation, which does not resolve extensional stresses, do not reproduce the approximate analytical results unless appropriate parameterizations for ice flux are imposed at the grounding line. For extensional-stress resolving "shelfy stream" models, differences between model results were mainly due to the choice of spatial discretization. Moving grid methods were found to be the most accurate at capturing grounding line evolution, since they track the grounding line explicitly. Adaptive mesh refinement can further improve accuracy, including fixed grid models that generally perform poorly at coarse resolution. Fixed grid models, with nested grid representations of the grounding line, are able to generate accurate steady state positions, but can be inaccurate over transients. Only one full-Stokes model was included in the intercomparison, and consequently the accuracy of shelfy stream models as approximations of full-Stokes models remains to be determined in detail, especially during transients.

  14. The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in Flaviviridae RNA polymerases

    Directory of Open Access Journals (Sweden)

    Dutartre Hélène

    2005-10-01

    Full Text Available Abstract Background The Flaviviridae virus family includes major human and animal pathogens. The RNA dependent RNA polymerase (RdRp plays a central role in the replication process, and thus is a validated target for antiviral drugs. Despite the increasing structural and enzymatic characterization of viral RdRps, detailed molecular replication mechanisms remain unclear. The hepatitis C virus (HCV is a major human pathogen difficult to study in cultured cells. The bovine viral diarrhea virus (BVDV is often used as a surrogate model to screen antiviral drugs against HCV. The structure of BVDV RdRp has been recently published. It presents several differences relative to HCV RdRp. These differences raise questions about the relevance of BVDV as a surrogate model, and cast novel interest on the "GB" virus C (GBV-C. Indeed, GBV-C is genetically closer to HCV than BVDV, and can lead to productive infection of cultured cells. There is no structural data for the GBV-C RdRp yet. Results We show in this study that the GBV-C RdRp is closest to the HCV RdRp. We report a 3D model of the GBV-C RdRp, developed using sequence-to-structure threading and comparative modeling based on the atomic coordinates of the HCV RdRp structure. Analysis of the predicted structural features in the phylogenetic context of the RNA polymerase family allows rationalizing most of the experimental data available. Both available structures and our model are explored to examine the catalytic cleft, allosteric and substrate binding sites. Conclusion Computational methods were used to infer evolutionary relationships and to predict the structure of a viral RNA polymerase. Docking a GTP molecule into the structure allows defining a GTP binding pocket in the GBV-C RdRp, such as that of BVDV. The resulting model suggests a new proposition for the mechanism of RNA synthesis, and may prove useful to design new experiments to implement our knowledge on the initiation mechanism of RNA

  15. Behavioral Change as a Result of Videotaped Playback: An Examination of Two Models.

    Science.gov (United States)

    Ronchi, Don; Ripple, Richard E.

    The literature on the behavior effects of videotaped playback reveals that little theoretical formulation has been offered to explain the positive results which have been reported. Two theoretical models are considered in regard to these results. The first, a reinforcement model, suggests that some behaviors are reinforced positively and some…

  16. The response of an equatorial ocean to simple wind stress patterns. I - Model formulation and analytic results. II - Numerical results

    Science.gov (United States)

    Cane, M. A.

    1979-01-01

    A time-dependent, primitive equation, beta plane model that is two-dimensional in the horizontal has been developed to model wind-driven equatorial ocean circulation. A simple vertical structure consisting of two layers above the thermocline with the same constant density permits a steady-state undercurrent in the model. An analytical study of the linear dynamics of the model suggests that the addition of inertial effects is needed to simulate the undercurrent properly. Also, both linear and nonlinear dynamics of the model are investigated numerically. Such nonlinear response to wind stress as a strong eastward equatorial undercurrent and an intense eastward 'countercurrent' at three deg N are noted in the numerical results.

  17. Simulated Models Suggest That Price per Calorie Is the Dominant Price Metric That Low-Income Individuals Use for Food Decision Making.

    Science.gov (United States)

    Beheshti, Rahmatollah; Igusa, Takeru; Jones-Smith, Jessica

    2016-11-01

    The price of food has long been considered one of the major factors that affects food choices. However, the price metric (e.g., the price of food per calorie or the price of food per gram) that individuals predominantly use when making food choices is unclear. Understanding which price metric is used is especially important for studying individuals with severe budget constraints because food price then becomes even more important in food choice. We assessed which price metric is used by low-income individuals in deciding what to eat. With the use of data from NHANES and the USDA Food and Nutrient Database for Dietary Studies, we created an agent-based model that simulated an environment representing the US population, wherein individuals were modeled as agents with a specific weight, age, and income. In our model, agents made dietary food choices while meeting their budget limits with the use of 1 of 3 different metrics for decision making: energy cost (price per calorie), unit price (price per gram), and serving price (price per serving). The food consumption patterns generated by our model were compared to 3 independent data sets. The food choice behaviors observed in 2 of the data sets were found to be closest to the simulated dietary patterns generated by the price per calorie metric. The behaviors observed in the third data set were equidistant from the patterns generated by price per calorie and price per serving metrics, whereas results generated by the price per gram metric were further away. Our simulations suggest that dietary food choice based on price per calorie best matches actual consumption patterns and may therefore be the most salient price metric for low-income populations. © 2016 American Society for Nutrition.

  18. Updated Results for the Wake Vortex Inverse Model

    Science.gov (United States)

    Robins, Robert E.; Lai, David Y.; Delisi, Donald P.; Mellman, George R.

    2008-01-01

    NorthWest Research Associates (NWRA) has developed an Inverse Model for inverting aircraft wake vortex data. The objective of the inverse modeling is to obtain estimates of the vortex circulation decay and crosswind vertical profiles, using time history measurements of the lateral and vertical position of aircraft vortices. The Inverse Model performs iterative forward model runs using estimates of vortex parameters, vertical crosswind profiles, and vortex circulation as a function of wake age. Iterations are performed until a user-defined criterion is satisfied. Outputs from an Inverse Model run are the best estimates of the time history of the vortex circulation derived from the observed data, the vertical crosswind profile, and several vortex parameters. The forward model, named SHRAPA, used in this inverse modeling is a modified version of the Shear-APA model, and it is described in Section 2 of this document. Details of the Inverse Model are presented in Section 3. The Inverse Model was applied to lidar-observed vortex data at three airports: FAA acquired data from San Francisco International Airport (SFO) and Denver International Airport (DEN), and NASA acquired data from Memphis International Airport (MEM). The results are compared with observed data. This Inverse Model validation is documented in Section 4. A summary is given in Section 5. A user's guide for the inverse wake vortex model is presented in a separate NorthWest Research Associates technical report (Lai and Delisi, 2007a).

  19. Generalised Chou-Yang model and recent results

    Energy Technology Data Exchange (ETDEWEB)

    Fazal-e-Aleem [International Centre for Theoretical Physics, Trieste (Italy); Rashid, H. [Punjab Univ., Lahore (Pakistan). Centre for High Energy Physics

    1996-12-31

    It is shown that most recent results of E710 and UA4/2 collaboration for the total cross section and {rho} together with earlier measurements give good agreement with measurements for the differential cross section at 546 and 1800 GeV within the framework of Generalised Chou-Yang model. These results are also compared with the predictions of other models. (author) 16 refs.

  20. Life cycle Prognostic Model Development and Initial Application Results

    Energy Technology Data Exchange (ETDEWEB)

    Jeffries, Brien; Hines, Wesley; Nam, Alan; Sharp, Michael; Upadhyaya, Belle [The University of Tennessee, Knoxville (United States)

    2014-08-15

    In order to obtain more accurate Remaining Useful Life (RUL) estimates based on empirical modeling, a Lifecycle Prognostics algorithm was developed that integrates various prognostic models. These models can be categorized into three types based on the type of data they process. The application of multiple models takes advantage of the most useful information available as the system or component operates through its lifecycle. The Lifecycle Prognostics is applied to an impeller test bed, and the initial results serve as a proof of concept.

  1. Some Econometric Results for the Blanchard-Watson Bubble Model

    DEFF Research Database (Denmark)

    Johansen, Soren; Lange, Theis

    The purpose of the present paper is to analyse a simple bubble model suggested by Blanchard and Watson. The model is defined by y(t) =s(t)¿y(t-1)+e(t), t=1,…,n, where s(t) is an i.i.d. binary variable with p=P(s(t)=1), independent of e(t) i.i.d. with mean zero and finite variance. We take ¿>1 so...... is whether a bubble model with infinite variance can create the long swings, or persistence, which are observed in many macro variables. We say that a variable is persistent if its autoregressive coefficient ¿(n) of y(t) on y(t-1), is close to one. We show that the estimator of ¿(n) converges to ¿p...

  2. Model performance evaluation (validation and calibration) in model-based studies of therapeutic interventions for cardiovascular diseases : a review and suggested reporting framework.

    Science.gov (United States)

    Haji Ali Afzali, Hossein; Gray, Jodi; Karnon, Jonathan

    2013-04-01

    Decision analytic models play an increasingly important role in the economic evaluation of health technologies. Given uncertainties around the assumptions used to develop such models, several guidelines have been published to identify and assess 'best practice' in the model development process, including general modelling approach (e.g., time horizon), model structure, input data and model performance evaluation. This paper focuses on model performance evaluation. In the absence of a sufficient level of detail around model performance evaluation, concerns regarding the accuracy of model outputs, and hence the credibility of such models, are frequently raised. Following presentation of its components, a review of the application and reporting of model performance evaluation is presented. Taking cardiovascular disease as an illustrative example, the review investigates the use of face validity, internal validity, external validity, and cross model validity. As a part of the performance evaluation process, model calibration is also discussed and its use in applied studies investigated. The review found that the application and reporting of model performance evaluation across 81 studies of treatment for cardiovascular disease was variable. Cross-model validation was reported in 55 % of the reviewed studies, though the level of detail provided varied considerably. We found that very few studies documented other types of validity, and only 6 % of the reviewed articles reported a calibration process. Considering the above findings, we propose a comprehensive model performance evaluation framework (checklist), informed by a review of best-practice guidelines. This framework provides a basis for more accurate and consistent documentation of model performance evaluation. This will improve the peer review process and the comparability of modelling studies. Recognising the fundamental role of decision analytic models in informing public funding decisions, the proposed

  3. The Animal Model Determines the Results of Aeromonas Virulence Factors

    Science.gov (United States)

    Romero, Alejandro; Saraceni, Paolo R.; Merino, Susana; Figueras, Antonio; Tomás, Juan M.; Novoa, Beatriz

    2016-01-01

    The selection of an experimental animal model is of great importance in the study of bacterial virulence factors. Here, a bath infection of zebrafish larvae is proposed as an alternative model to study the virulence factors of Aeromonas hydrophila. Intraperitoneal infections in mice and trout were compared with bath infections in zebrafish larvae using specific mutants. The great advantage of this model is that bath immersion mimics the natural route of infection, and injury to the tail also provides a natural portal of entry for the bacteria. The implication of T3SS in the virulence of A. hydrophila was analyzed using the AH-1::aopB mutant. This mutant was less virulent than the wild-type strain when inoculated into zebrafish larvae, as described in other vertebrates. However, the zebrafish model exhibited slight differences in mortality kinetics only observed using invertebrate models. Infections using the mutant AH-1ΔvapA lacking the gene coding for the surface S-layer suggested that this protein was not totally necessary to the bacteria once it was inside the host, but it contributed to the inflammatory response. Only when healthy zebrafish larvae were infected did the mutant produce less mortality than the wild-type. Variations between models were evidenced using the AH-1ΔrmlB, which lacks the O-antigen lipopolysaccharide (LPS), and the AH-1ΔwahD, which lacks the O-antigen LPS and part of the LPS outer-core. Both mutants showed decreased mortality in all of the animal models, but the differences between them were only observed in injured zebrafish larvae, suggesting that residues from the LPS outer core must be important for virulence. The greatest differences were observed using the AH-1ΔFlaB-J (lacking polar flagella and unable to swim) and the AH-1::motX (non-motile but producing flagella). They were as pathogenic as the wild-type strain when injected into mice and trout, but no mortalities were registered in zebrafish larvae. This study demonstrates

  4. A stochastic model of gene-culture coevolution suggested by the "culture historical hypothesis" for the evolution of adult lactose absorption in humans.

    Science.gov (United States)

    Aoki, K

    1986-05-01

    A stochastic model of gene-culture coevolution, suggested by the "culture historical hypothesis" of Simoons and McCracken, is presented. According to this hypothesis, adult lactose absorption, believed to be an autosomal dominant trait, attained a high frequency in some human populations due to the positive selection pressure induced by culturally determined milk use in those populations. Two-dimensional Kolmogorov backward equations with appropriate boundary conditions are derived for the ultimate fixation probability of milk users, of the gene for adult lactose absorption, and of both jointly, and for the average time until fixation of the gene. These boundary value problems are solved numerically by the Gauss-Seidel method. I define a theoretical measure of the correlation between gene and culture in terms of the three ultimate fixation probabilities. Monte Carlo simulations are conducted to check and extend the numerical results and also to obtain the first arrival time at gene frequency 0.70, which is approximately the highest observed frequency in any population. Two results that pertain to the culture historical hypothesis are obtained. First, the incomplete correlation observed between adult lactose absorption and milk use does not necessarily constitute evidence against the hypothesis. Second, for the postulated genetic change to have occurred within the 6000-year period since the advent of dairying, either the effective population size was of the order of 100, or, if it was of larger order, the selection coefficient probably had to exceed 5%.

  5. Meteorological Uncertainty of atmospheric Dispersion model results (MUD)

    DEFF Research Database (Denmark)

    Havskov Sørensen, Jens; Amstrup, Bjarne; Feddersen, Henrik

    The MUD project addresses assessment of uncertainties of atmospheric dispersion model predictions, as well as optimum presentation to decision makers. Previously, it has not been possible to estimate such uncertainties quantitatively, but merely to calculate the 'most likely' dispersion scenario...... of the meteorological model results. These uncertainties stem from e.g. limits in meteorological obser-vations used to initialise meteorological forecast series. By perturbing the initial state of an NWP model run in agreement with the available observa-tional data, an ensemble of meteorological forecasts is produced....... However, recent developments in numerical weather prediction (NWP) include probabilistic forecasting techniques, which can be utilised also for atmospheric dispersion models. The ensemble statistical methods developed and applied to NWP models aim at describing the inherent uncertainties...

  6. Meteorological Uncertainty of atmospheric Dispersion model results (MUD)

    DEFF Research Database (Denmark)

    Havskov Sørensen, Jens; Amstrup, Bjarne; Feddersen, Henrik

    The MUD project addresses assessment of uncertainties of atmospheric dispersion model predictions, as well as possibilities for optimum presentation to decision makers. Previously, it has not been possible to estimate such uncertainties quantitatively, but merely to calculate the ‘most likely...... uncertainties of the meteorological model results. These uncertainties stem from e.g. limits in meteorological observations used to initialise meteorological forecast series. By perturbing e.g. the initial state of an NWP model run in agreement with the available observational data, an ensemble......’ dispersion scenario. However, recent developments in numerical weather prediction (NWP) include probabilistic forecasting techniques, which can be utilised also for long-range atmospheric dispersion models. The ensemble statistical methods developed and applied to NWP models aim at describing the inherent...

  7. Mathematical Existence Results for the Doi-Edwards Polymer Model

    Science.gov (United States)

    Chupin, Laurent

    2017-01-01

    In this paper, we present some mathematical results on the Doi-Edwards model describing the dynamics of flexible polymers in melts and concentrated solutions. This model, developed in the late 1970s, has been used and extensively tested in modeling and simulation of polymer flows. From a mathematical point of view, the Doi-Edwards model consists in a strong coupling between the Navier-Stokes equations and a highly nonlinear constitutive law. The aim of this article is to provide a rigorous proof of the well-posedness of the Doi-Edwards model, namely that it has a unique regular solution. We also prove, which is generally much more difficult for flows of viscoelastic type, that the solution is global in time in the two dimensional case, without any restriction on the smallness of the data.

  8. Modeling Results for the ITER Cryogenic Fore Pump

    Science.gov (United States)

    Zhang, Dongsheng

    The work presented here is the analysis and modeling of the ITER-Cryogenic Fore Pump (CFP), also called Cryogenic Viscous Compressor (CVC). Unlike common cryopumps that are usually used to create and maintain vacuum, the cryogenic fore pump is designed for ITER to collect and compress hydrogen isotopes during the regeneration process of the torus cryopumps. Different from common cryopumps, the ITER-CFP works in the viscous flow regime. As a result, both adsorption boundary conditions and transport phenomena contribute unique features to the pump performance. In this report, the physical mechanisms of cryopumping are studied, especially the diffusion-adsorption process and these are coupled with the standard equations of species, momentum and energy balance, as well as the equation of state. Numerical models are developed, which include highly coupled non-linear conservation equations of species, momentum, and energy and equation of state. Thermal and kinetic properties are treated as functions of temperature, pressure, and composition of the gas fluid mixture. To solve such a set of equations, a novel numerical technique, identified as the Group-Member numerical technique is proposed. This document presents three numerical models: a transient model, a steady state model, and a hemisphere (or molecular flow) model. The first two models are developed based on analysis of the raw experimental data while the third model is developed as a preliminary study. The modeling results are compared with available experiment data for verification. The models can be used for cryopump design, and can also benefit problems, such as loss of vacuum in a cryomodule or cryogenic desublimation. The scientific and engineering investigation being done here builds connections between Mechanical Engineering and other disciplines, such as Chemical Engineering, Physics, and Chemistry.

  9. Comparison of NASCAP modelling results with lumped circuit analysis

    Science.gov (United States)

    Stang, D. B.; Purvis, C. K.

    1980-01-01

    Engineering design tools that can be used to predict the development of absolute and differential potentials by realistic spacecraft under geomagnetic substorm conditions are described. Two types of analyses are in use: (1) the NASCAP code, which computes quasistatic charging of geometrically complex objects with multiple surface materials in three dimensions; (2) lumped element equivalent circuit models that are used for analyses of particular spacecraft. The equivalent circuit models require very little computation time, however, they cannot account for effects, such as the formation of potential barriers, that are inherently multidimensional. Steady state potentials of structure and insulation are compared with those resulting from the equivalent circuit model.

  10. The East model: recent results and new progresses

    CERN Document Server

    Faggionato, Alessandra; Roberto, Cyril; Toninelli, Cristina

    2012-01-01

    The East model is a particular one dimensional interacting particle system in which certain transitions are forbidden according to some constraints depending on the configuration of the system. As such it has received particular attention in the physics literature as a special case of a more general class of systems referred to as kinetically constrained models, which play a key role in explaining some features of the dynamics of glasses. In this paper we give an extensive overview of recent rigorous results concerning the equilibrium and non-equilibrium dynamics of the East model together with some new improvements.

  11. Constraining hybrid inflation models with WMAP three-year results

    CERN Document Server

    Cardoso, A

    2006-01-01

    We reconsider the original model of quadratic hybrid inflation in light of the WMAP three-year results and study the possibility of obtaining a spectral index of primordial density perturbations, $n_s$, smaller than one from this model. The original hybrid inflation model naturally predicts $n_s\\geq1$ in the false vacuum dominated regime but it is also possible to have $n_s<1$ when the quadratic term dominates. We therefore investigate whether there is also an intermediate regime compatible with the latest constraints, where the scalar field value during the last 50 e-folds of inflation is less than the Planck scale.

  12. Recent MEG Results and Predictive SO(10) Models

    CERN Document Server

    Fukuyama, Takeshi

    2011-01-01

    Recent MEG results of a search for the lepton flavor violating (LFV) muon decay, $\\mu \\to e \\gamma$, show 3 events as the best value for the number of signals in the maximally likelihood fit. Although this result is still far from the evidence/discovery in statistical point of view, it might be a sign of a certain new physics beyond the Standard Model. As has been well-known, supersymmetric (SUSY) models can generate the $\\mu \\to e \\gamma$ decay rate within the search reach of the MEG experiment. A certain class of SUSY grand unified theory (GUT) models such as the minimal SUSY SO(10) model (we call this class of models "predictive SO(10) models") can unambiguously determine fermion Yukawa coupling matrices, in particular, the neutrino Dirac Yukawa matrix. Based on the universal boundary conditions for soft SUSY breaking parameters at the GUT scale, we calculate the rate of the $\\mu \\to e \\gamma$ process by using the completely determined Dirac Yukawa matrix in two examples of predictive SO(10) models. If we ...

  13. Summary of FY15 results of benchmark modeling activities

    Energy Technology Data Exchange (ETDEWEB)

    Arguello, J. Guadalupe [Sandia National Laboratories (SNL-NM), Albuquerque, NM (United States)

    2015-08-01

    Sandia is participating in the third phase of an is a contributing partner to a U.S.-German "Joint Project" entitled "Comparison of current constitutive models and simulation procedures on the basis of model calculations of the thermo-mechanical behavior and healing of rock salt." The first goal of the project is to check the ability of numerical modeling tools to correctly describe the relevant deformation phenomena in rock salt under various influences. Achieving this goal will lead to increased confidence in the results of numerical simulations related to the secure storage of radioactive wastes in rock salt, thereby enhancing the acceptance of the results. These results may ultimately be used to make various assertions regarding both the stability analysis of an underground repository in salt, during the operating phase, and the long-term integrity of the geological barrier against the release of harmful substances into the biosphere, in the post-operating phase.

  14. Standard Model physics results from ATLAS and CMS

    CERN Document Server

    Dordevic, Milos

    2015-01-01

    The most recent results of Standard Model physics studies in proton-proton collisions at 7 TeV and 8 TeV center-of-mass energy based on data recorded by ATLAS and CMS detectors during the LHC Run I are reviewed. This overview includes studies of vector boson production cross section and properties, results on V+jets production with light and heavy flavours, latest VBS and VBF results, measurement of diboson production with an emphasis on ATGC and QTGC searches, as well as results on inclusive jet cross sections with strong coupling constant measurement and PDF constraints. The outlined results are compared to the prediction of the Standard Model.

  15. Differential expression of two bc1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective roles in iron or sulfur oxidation.

    Science.gov (United States)

    Bruscella, Patrice; Appia-Ayme, Corinne; Levicán, Gloria; Ratouchniak, Jeanine; Jedlicki, Eugenia; Holmes, David S; Bonnefoy, Violaine

    2007-01-01

    Three strains of the strict acidophilic chemolithoautotrophic Acidithiobacillus ferrooxidans, including the type strain ATCC 23270, contain a petIIABC gene cluster that encodes the three proteins, cytochrome c1, cytochrome b and a Rieske protein, that constitute a bc1 electron-transfer complex. RT-PCR and Northern blotting show that the petIIABC cluster is co-transcribed with cycA, encoding a cytochrome c belonging to the c4 family, sdrA, encoding a putative short-chain dehydrogenase, and hip, encoding a high potential iron-sulfur protein, suggesting that the six genes constitute an operon, termed the petII operon. Previous results indicated that A. ferrooxidans contains a second pet operon, termed the petI operon, which contains a gene cluster that is similarly organized except that it lacks hip. Real-time PCR and Northern blot experiments demonstrate that petI is transcribed mainly in cells grown in medium containing iron, whereas petII is transcribed in cells grown in media containing sulfur or iron. Primer extension experiments revealed possible transcription initiation sites for the petI and petII operons. A model is presented in which petI is proposed to encode the bc1 complex, functioning in the uphill flow of electrons from iron to NAD(P), whereas petII is suggested to be involved in electron transfer from sulfur (or formate) to oxygen (or ferric iron). A. ferrooxidans is the only organism, to date, to exhibit two functional bc1 complexes.

  16. Delta-tilde interpretation of standard linear mixed model results

    DEFF Research Database (Denmark)

    Brockhoff, Per Bruun; Amorim, Isabel de Sousa; Kuznetsova, Alexandra

    2016-01-01

    effects relative to the residual error and to choose the proper effect size measure. For multi-attribute bar plots of F-statistics this amounts, in balanced settings, to a simple transformation of the bar heights to get them transformed into depicting what can be seen as approximately the average pairwise...... for factors with differences in number of levels. For mixed models, where in general the relevant error terms for the fixed effects are not the pure residual error, it is suggested to base the d-prime-like interpretation on the residual error. The methods are illustrated on a multifactorial sensory profile...... inherently challenging effect size measure estimates in ANOVA settings....

  17. Relationship Marketing results: proposition of a cognitive mapping model

    Directory of Open Access Journals (Sweden)

    Iná Futino Barreto

    2015-12-01

    Full Text Available Objective - This research sought to develop a cognitive model that expresses how marketing professionals understand the relationship between the constructs that define relationship marketing (RM. It also tried to understand, using the obtained model, how objectives in this field are achieved. Design/methodology/approach – Through cognitive mapping, we traced 35 individual mental maps, highlighting how each respondent understands the interactions between RM elements. Based on the views of these individuals, we established an aggregate mental map. Theoretical foundation – The topic is based on a literature review that explores the RM concept and its main elements. Based on this review, we listed eleven main constructs. Findings – We established an aggregate mental map that represents the RM structural model. Model analysis identified that CLV is understood as the final result of RM. We also observed that the impact of most of the RM elements on CLV is brokered by loyalty. Personalization and quality, on the other hand, proved to be process input elements, and are the ones that most strongly impact others. Finally, we highlight that elements that punish customers are much less effective than elements that benefit them. Contributions - The model was able to insert core elements of RM, but absent from most formal models: CLV and customization. The analysis allowed us to understand the interactions between the RM elements and how the end result of RM (CLV is formed. This understanding improves knowledge on the subject and helps guide, assess and correct actions.

  18. Value of the distant future: Model-independent results

    Science.gov (United States)

    Katz, Yuri A.

    2017-01-01

    This paper shows that the model-independent account of correlations in an interest rate process or a log-consumption growth process leads to declining long-term tails of discount curves. Under the assumption of an exponentially decaying memory in fluctuations of risk-free real interest rates, I derive the analytical expression for an apt value of the long run discount factor and provide a detailed comparison of the obtained result with the outcome of the benchmark risk-free interest rate models. Utilizing the standard consumption-based model with an isoelastic power utility of the representative economic agent, I derive the non-Markovian generalization of the Ramsey discounting formula. Obtained analytical results allowing simple calibration, may augment the rigorous cost-benefit and regulatory impact analysis of long-term environmental and infrastructure projects.

  19. Marginal production in the Gulf of Mexico - II. Model results

    Energy Technology Data Exchange (ETDEWEB)

    Kaiser, Mark J.; Yu, Yunke [Center for Energy Studies, Louisiana State University, Baton Rouge, LA 70803 (United States)

    2010-08-15

    In the second part of this two-part article on marginal production in the Gulf of Mexico, we estimate the number of committed assets in water depth less than 1000 ft that are expected to be marginal over a 60-year time horizon. We compute the expected quantity and value of the production and gross revenue streams of the gulf's committed asset inventory circa. January 2007 using a probabilistic model framework. Cumulative hydrocarbon production from the producing inventory is estimated to be 1056 MMbbl oil and 13.3 Tcf gas. Marginal production from the committed asset inventory is expected to contribute 4.1% of total oil production and 5.4% of gas production. A meta-evaluation procedure is adapted to present the results of sensitivity analysis. Model results are discussed along with a description of the model framework and limitations of the analysis. (author)

  20. Exact results for car accidents in a traffic model

    Science.gov (United States)

    Huang, Ding-wei

    1998-07-01

    Within the framework of a recent model for car accidents on single-lane highway traffic, we study analytically the probability of the occurrence of car accidents. Exact results are obtained. Various scaling behaviours are observed. The linear dependence of the occurrence of car accidents on density is understood as the dominance of a single velocity in the distribution.

  1. Assessment of Galileo modal test results for mathematical model verification

    Science.gov (United States)

    Trubert, M.

    1984-01-01

    The modal test program for the Galileo Spacecraft was completed at the Jet Propulsion Laboratory in the summer of 1983. The multiple sine dwell method was used for the baseline test. The Galileo Spacecraft is a rather complex 2433 kg structure made of a central core on which seven major appendages representing 30 percent of the total mass are attached, resulting in a high modal density structure. The test revealed a strong nonlinearity in several major modes. This nonlinearity discovered in the course of the test necessitated running additional tests at the unusually high response levels of up to about 21 g. The high levels of response were required to obtain a model verification valid at the level of loads for which the spacecraft was designed. Because of the high modal density and the nonlinearity, correlation between the dynamic mathematical model and the test results becomes a difficult task. Significant changes in the pre-test analytical model are necessary to establish confidence in the upgraded analytical model used for the final load verification. This verification, using a test verified model, is required by NASA to fly the Galileo Spacecraft on the Shuttle/Centaur launch vehicle in 1986.

  2. Modeling vertical loads in pools resulting from fluid injection. [BWR

    Energy Technology Data Exchange (ETDEWEB)

    Lai, W.; McCauley, E.W.

    1978-06-15

    Table-top model experiments were performed to investigate pressure suppression pool dynamics effects due to a postulated loss-of-coolant accident (LOCA) for the Peachbottom Mark I boiling water reactor containment system. The results guided subsequent conduct of experiments in the /sup 1///sub 5/-scale facility and provided new insight into the vertical load function (VLF). Model experiments show an oscillatory VLF with the download typically double-spiked followed by a more gradual sinusoidal upload. The load function contains a high frequency oscillation superimposed on a low frequency one; evidence from measurements indicates that the oscillations are initiated by fluid dynamics phenomena.

  3. Initial CGE Model Results Summary Exogenous and Endogenous Variables Tests

    Energy Technology Data Exchange (ETDEWEB)

    Edwards, Brian Keith [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Boero, Riccardo [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Rivera, Michael Kelly [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-08-07

    The following discussion presents initial results of tests of the most recent version of the National Infrastructure Simulation and Analysis Center Dynamic Computable General Equilibrium (CGE) model developed by Los Alamos National Laboratory (LANL). The intent of this is to test and assess the model’s behavioral properties. The test evaluated whether the predicted impacts are reasonable from a qualitative perspective. This issue is whether the predicted change, be it an increase or decrease in other model variables, is consistent with prior economic intuition and expectations about the predicted change. One of the purposes of this effort is to determine whether model changes are needed in order to improve its behavior qualitatively and quantitatively.

  4. Simulating lightning into the RAMS model: implementation and preliminary results

    Directory of Open Access Journals (Sweden)

    S. Federico

    2014-05-01

    Full Text Available This paper shows the results of a tailored version of a previously published methodology, designed to simulate lightning activity, implemented into the Regional Atmospheric Modeling System (RAMS. The method gives the flash density at the resolution of the RAMS grid-scale allowing for a detailed analysis of the evolution of simulated lightning activity. The system is applied in detail to two case studies occurred over the Lazio Region, in Central Italy. Simulations are compared with the lightning activity detected by the LINET network. The cases refer to two thunderstorms of different intensity. Results show that the model predicts reasonably well both cases and that the lightning activity is well reproduced especially for the most intense case. However, there are errors in timing and positioning of the convection, whose magnitude depends on the case study, which mirrors in timing and positioning errors of the lightning distribution. To assess objectively the performance of the methodology, standard scores are presented for four additional case studies. Scores show the ability of the methodology to simulate the daily lightning activity for different spatial scales and for two different minimum thresholds of flash number density. The performance decreases at finer spatial scales and for higher thresholds. The comparison of simulated and observed lighting activity is an immediate and powerful tool to assess the model ability to reproduce the intensity and the evolution of the convection. This shows the importance of the use of computationally efficient lightning schemes, such as the one described in this paper, in forecast models.

  5. Modeling air quality over China: Results from the Panda project

    Science.gov (United States)

    Katinka Petersen, Anna; Bouarar, Idir; Brasseur, Guy; Granier, Claire; Xie, Ying; Wang, Lili; Wang, Xuemei

    2015-04-01

    China faces strong air pollution problems related to rapid economic development in the past decade and increasing demand for energy. Air quality monitoring stations often report high levels of particle matter and ozone all over the country. Knowing its long-term health impacts, air pollution became then a pressing problem not only in China but also in other Asian countries. The PANDA project is a result of cooperation between scientists from Europe and China who joined their efforts for a better understanding of the processes controlling air pollution in China, improve methods for monitoring air quality and elaborate indicators in support of European and Chinese policies. A modeling system of air pollution is being setup within the PANDA project and include advanced global (MACC, EMEP) and regional (WRF-Chem, EMEP) meteorological and chemical models to analyze and monitor air quality in China. The poster describes the accomplishments obtained within the first year of the project. Model simulations for January and July 2010 are evaluated with satellite measurements (SCIAMACHY NO2 and MOPITT CO) and in-situ data (O3, CO, NOx, PM10 and PM2.5) observed at several surface stations in China. Using the WRF-Chem model, we investigate the sensitivity of the model performance to emissions (MACCity, HTAPv2), horizontal resolution (60km, 20km) and choice of initial and boundary conditions.

  6. Exact results for the one dimensional asymmetric exclusion model

    Science.gov (United States)

    Derrida, B.; Evans, M. R.; Hakim, V.; Pasquier, V.

    1993-11-01

    The asymmetric exclusion model describes a system of particles hopping in a preferred direction with hard core repulsion. These particles can be thought of as charged particles in a field, as steps of an interface, as cars in a queue. Several exact results concerning the steady state of this system have been obtained recently. The solution consists of representing the weights of the configurations in the steady state as products of non-commuting matrices.

  7. Exact results for the one dimensional asymmetric exclusion model

    Energy Technology Data Exchange (ETDEWEB)

    Derrida, B.; Evans, M.R.; Pasquier, V. [CEA Centre d`Etudes de Saclay, 91 - Gif-sur-Yvette (France). Service de Physique Theorique; Hakim, V. [Ecole Normale Superieure, 75 - Paris (France)

    1993-12-31

    The asymmetric exclusion model describes a system of particles hopping in a preferred direction with hard core repulsion. These particles can be thought of as charged particles in a field, as steps of an interface, as cars in a queue. Several exact results concerning the steady state of this system have been obtained recently. The solution consists of representing the weights of the configurations in the steady state as products of non-commuting matrices. (author).

  8. APPLYING LOGISTIC REGRESSION MODEL TO THE EXAMINATION RESULTS DATA

    Directory of Open Access Journals (Sweden)

    Goutam Saha

    2011-01-01

    Full Text Available The binary logistic regression model is used to analyze the school examination results(scores of 1002 students. The analysis is performed on the basis of the independent variables viz.gender, medium of instruction, type of schools, category of schools, board of examinations andlocation of schools, where scores or marks are assumed to be dependent variables. The odds ratioanalysis compares the scores obtained in two examinations viz. matriculation and highersecondary.

  9. Analytical results for a three-phase traffic model.

    Science.gov (United States)

    Huang, Ding-wei

    2003-10-01

    We study analytically a cellular automaton model, which is able to present three different traffic phases on a homogeneous highway. The characteristics displayed in the fundamental diagram can be well discerned by analyzing the evolution of density configurations. Analytical expressions for the traffic flow and shock speed are obtained. The synchronized flow in the intermediate-density region is the result of aggressive driving scheme and determined mainly by the stochastic noise.

  10. Challenges in validating model results for first year ice

    Science.gov (United States)

    Melsom, Arne; Eastwood, Steinar; Xie, Jiping; Aaboe, Signe; Bertino, Laurent

    2017-04-01

    In order to assess the quality of model results for the distribution of first year ice, a comparison with a product based on observations from satellite-borne instruments has been performed. Such a comparison is not straightforward due to the contrasting algorithms that are used in the model product and the remote sensing product. The implementation of the validation is discussed in light of the differences between this set of products, and validation results are presented. The model product is the daily updated 10-day forecast from the Arctic Monitoring and Forecasting Centre in CMEMS. The forecasts are produced with the assimilative ocean prediction system TOPAZ. Presently, observations of sea ice concentration and sea ice drift are introduced in the assimilation step, but data for sea ice thickness and ice age (or roughness) are not included. The model computes the age of the ice by recording and updating the time passed after ice formation as sea ice grows and deteriorates as it is advected inside the model domain. Ice that is younger than 365 days is classified as first year ice. The fraction of first-year ice is recorded as a tracer in each grid cell. The Ocean and Sea Ice Thematic Assembly Centre in CMEMS redistributes a daily product from the EUMETSAT OSI SAF of gridded sea ice conditions which include "ice type", a representation of the separation of regions between those infested by first year ice, and those infested by multi-year ice. The ice type is parameterized based on data for the gradient ratio GR(19,37) from SSMIS observations, and from the ASCAT backscatter parameter. This product also includes information on ambiguity in the processing of the remote sensing data, and the product's confidence level, which have a strong seasonal dependency.

  11. Theories of Suggestion.

    Science.gov (United States)

    Brown, W

    1928-02-01

    The word "suggestion" has been used in educational, scientific and medical literature in slightly different senses. In psychological medicine the use of suggestion has developed out of the earlier use of hypnotic influence.Charcot defined hypnosis as an artificial hysteria, Bernheim as an artificially increased suggestibility. The two definitions need to be combined to give an adequate account of hypnosis. Moreover, due allowance should be made for the factors of dissociation and of rapport in hypnotic phenomena.The relationships between dissociation, suggestibility, and hypnotizability.Theories of suggestion propounded by Pierre Janet, Freud, McDougall, Pawlow and others. Ernest Jones's theory of the nature of auto-suggestion. Janet explains suggestion in terms of ideo-motor action in which the suggested idea, because of the inactivity of competing ideas, produces its maximum effect. Freud explains rapport in terms of the sex instinct "inhibited in its aim" (transference) and brings in his distinction of "ego" and "ego-ideal" (or "super-ego") to supplement the theory. Jones explains auto-suggestion in terms of narcissism. McDougall explains hypnotic suggestion in terms of the instinct of self-abasement. But different instincts may supply the driving power to produce suggestion-effects in different circumstances. Such instincts as those of self-preservation (fear) and gregariousness may play their part. Auto-suggestion as a therapeutic factor is badly named. It supplements, but does not supplant the will, and makes complete volition possible.

  12. Results of Satellite Brightness Modeling Using Kringing Optimized Interpolation

    Science.gov (United States)

    Weeden, C.; Hejduk, M.

    At the 2005 AMOS conference, Kriging Optimized Interpolation (KOI) was presented as a tool to model satellite brightness as a function of phase angle and solar declination angle (J.M Okada and M.D. Hejduk). Since November 2005, this method has been used to support the tasking algorithm for all optical sensors in the Space Surveillance Network (SSN). The satellite brightness maps generated by the KOI program are compared to each sensor's ability to detect an object as a function of the brightness of the background sky and angular rate of the object. This will determine if the sensor can technically detect an object based on an explicit calculation of the object's probability of detection. In addition, recent upgrades at Ground-Based Electro Optical Deep Space Surveillance Sites (GEODSS) sites have increased the amount and quality of brightness data collected and therefore available for analysis. This in turn has provided enough data to study the modeling process in more detail in order to obtain the most accurate brightness prediction of satellites. Analysis of two years of brightness data gathered from optical sensors and modeled via KOI solutions are outlined in this paper. By comparison, geo-stationary objects (GEO) were tracked less than non-GEO objects but had higher density tracking in phase angle due to artifices of scheduling. A statistically-significant fit to a deterministic model was possible less than half the time in both GEO and non-GEO tracks, showing that a stochastic model must often be used alone to produce brightness results, but such results are nonetheless serviceable. Within the Kriging solution, the exponential variogram model was the most frequently employed in both GEO and non-GEO tracks, indicating that monotonic brightness variation with both phase and solar declination angle is common and testifying to the suitability to the application of regionalized variable theory to this particular problem. Finally, the average nugget value, or

  13. Titan Chemistry: Results From A Global Climate Model

    Science.gov (United States)

    Wilson, Eric; West, R. A.; Friedson, A. J.; Oyafuso, F.

    2008-09-01

    We present results from a 3-dimesional global climate model of Titan's atmosphere and surface. This model, a modified version of NCAR's CAM-3 (Community Atmosphere Model), has been optimized for analysis of Titan's lower atmosphere and surface. With the inclusion of forcing from Saturn's gravitational tides, interaction from the surface, transfer of longwave and shortwave radiation, and parameterization of haze properties, constrained by Cassini observations, a dynamical field is generated, which serves to advect 14 long-lived species. The concentrations of these chemical tracers are also affected by 82 chemical reactions and the photolysis of 21 species, based on the Wilson and Atreya (2004) model, that provide sources and sinks for the advected species along with 23 additional non-advected radicals. In addition, the chemical contribution to haze conversion is parameterized along with the microphysical processes that serve to distribute haze opacity throughout the atmosphere. References Wilson, E.H. and S.K. Atreya, J. Geophys. Res., 109, E06002, 2004.

  14. Why Does a Kronecker Model Result in Misleading Capacity Estimates?

    CERN Document Server

    Raghavan, Vasanthan; Sayeed, Akbar M

    2008-01-01

    Many recent works that study the performance of multi-input multi-output (MIMO) systems in practice assume a Kronecker model where the variances of the channel entries, upon decomposition on to the transmit and the receive eigen-bases, admit a separable form. Measurement campaigns, however, show that the Kronecker model results in poor estimates for capacity. Motivated by these observations, a channel model that does not impose a separable structure has been recently proposed and shown to fit the capacity of measured channels better. In this work, we show that this recently proposed modeling framework can be viewed as a natural consequence of channel decomposition on to its canonical coordinates, the transmit and/or the receive eigen-bases. Using tools from random matrix theory, we then establish the theoretical basis behind the Kronecker mismatch at the low- and the high-SNR extremes: 1) Sparsity of the dominant statistical degrees of freedom (DoF) in the true channel at the low-SNR extreme, and 2) Non-regul...

  15. New DNS and modeling results for turbulent pipe flow

    Science.gov (United States)

    Johansson, Arne; El Khoury, George; Grundestam, Olof; Schlatter, Philipp; Brethouwer, Geert; Linne Flow Centre Team

    2013-11-01

    The near-wall region of turbulent pipe and channel flows (as well as zero-pressure gradient boundary layers) have been shown to exhibit a very high degree of similarity in terms of all statistical moments and many other features, while even the mean velocity profile in the two cases exhibits significant differences between in the outer region. The wake part of the profile, i.e. the deviation from the log-law, in the outer region is of substantially larger amplitude in pipe flow as compared to channel flow (although weaker than in boundary layer flow). This intriguing feature has been well known but has no simple explanation. Model predictions typically give identical results for the two flows. We have analyzed a new set of DNS for pipe and channel flows (el Khoury et al. 2013, Flow, Turbulence and Combustion) for friction Reynolds numbers up to 1000 and made comparing calculations with differential Reynolds stress models (DRSM). We have strong indications that the key factor behind the difference in mean velocity in the outer region can be coupled to differences in the turbulent diffusion in this region. This is also supported by DRSM results, where interesting differences are seen depending on the sophistication of modeling the turbulent diffusion coefficient.

  16. Some Results on Optimal Dividend Problem in Two Risk Models

    Directory of Open Access Journals (Sweden)

    Shuaiqi Zhang

    2010-12-01

    Full Text Available The compound Poisson risk model and the compound Poisson risk model perturbed by diffusion are considered in the presence of a dividend barrier with solvency constraints. Moreover, it extends the known result due to [1]. Ref. [1] finds the optimal dividend policy is of a barrier type for a jump-diffusion model with exponentially distributed jumps. In this paper, it turns out that there can be two different solutions depending on the model’s parameters. Furthermore, an interesting result is given: the proportional transaction cost has no effect on the dividend barrier. The objective of the corporation is to maximize the cumulative expected discounted dividends payout with solvency constraints before the time of ruin. It is well known that under some reasonable assumptions, optimal dividend strategy is a barrier strategy, i.e., there is a level b_{1}(b_{2} so that whenever surplus goes above the level b_{1}(b_{2}, the excess is paid out as dividends. However, the optimal level b_{1}(b_{2} may be unacceptably low from a solvency point of view. Therefore, some constraints should imposed on an insurance company such as to pay out dividends unless the surplus has reached a level b^{1}_{c}>b_{1}(b^2_{c}>b_{2} . We show that in this case a barrier strategy at b^{1}_{c}(b^2_{c} is optimal.

  17. Modeling results for the ITER cryogenic fore pump

    Science.gov (United States)

    Zhang, D. S.; Miller, F. K.; Pfotenhauer, J. M.

    2014-01-01

    The cryogenic fore pump (CFP) is designed for ITER to collect and compress hydrogen isotopes during the regeneration process of torus cryopumps. Different from common cryopumps, the ITER-CFP works in the viscous flow regime. As a result, both adsorption boundary conditions and transport phenomena contribute unique features to the pump performance. In this report, the physical mechanisms of cryopumping are studied, especially the diffusion-adsorption process and these are coupled with standard equations of species, momentum and energy balance, as well as the equation of state. Numerical models are developed, which include highly coupled non-linear conservation equations of species, momentum and energy and equation of state. Thermal and kinetic properties are treated as functions of temperature, pressure, and composition. To solve such a set of equations, a novel numerical technique, identified as the Group-Member numerical technique is proposed. It is presented here a 1D numerical model. The results include comparison with the experimental data of pure hydrogen flow and a prediction for hydrogen flow with trace helium. An advanced 2D model and detailed explanation of the Group-Member technique are to be presented in following papers.

  18. Towards more accurate isoscapes encouraging results from wine, water and marijuana data/model and model/model comparisons.

    Science.gov (United States)

    West, J. B.; Ehleringer, J. R.; Cerling, T.

    2006-12-01

    Understanding how the biosphere responds to change it at the heart of biogeochemistry, ecology, and other Earth sciences. The dramatic increase in human population and technological capacity over the past 200 years or so has resulted in numerous, simultaneous changes to biosphere structure and function. This, then, has lead to increased urgency in the scientific community to try to understand how systems have already responded to these changes, and how they might do so in the future. Since all biospheric processes exhibit some patchiness or patterns over space, as well as time, we believe that understanding the dynamic interactions between natural systems and human technological manipulations can be improved if these systems are studied in an explicitly spatial context. We present here results of some of our efforts to model the spatial variation in the stable isotope ratios (δ2H and δ18O) of plants over large spatial extents, and how these spatial model predictions compare to spatially explicit data. Stable isotopes trace and record ecological processes and as such, if modeled correctly over Earth's surface allow us insights into changes in biosphere states and processes across spatial scales. The data-model comparisons show good agreement, in spite of the remaining uncertainties (e.g., plant source water isotopic composition). For example, inter-annual changes in climate are recorded in wine stable isotope ratios. Also, a much simpler model of leaf water enrichment driven with spatially continuous global rasters of precipitation and climate normals largely agrees with complex GCM modeling that includes leaf water δ18O. Our results suggest that modeling plant stable isotope ratios across large spatial extents may be done with reasonable accuracy, including over time. These spatial maps, or isoscapes, can now be utilized to help understand spatially distributed data, as well as to help guide future studies designed to understand ecological change across

  19. Model validation: Issues regarding comparisons of point measurements and high-resolution modeling results

    Science.gov (United States)

    Sandvik, Anne D.; Skagseth, Øystein; Skogen, Morten D.

    2016-10-01

    In this study we compare a high resolution model of waters on the Norwegian Shelf with hydrographic observations obtained during 2009 at Ingøy, a fixed coastal station off northwestern Norway operated by the Institute of Marine Research. The observations comprise snapshots from Ingøy every two weeks, whereas the model represents an average over a certain volume and is continuous in time. We suggest that bias is the best way to compare the modeled and observed times series, while acknowledging the short-term variability (within a day) it is recommended to use the modeled range to estimate an acceptable deviation between single points in the series. Using the suggested method we conclude that an acceptable deviation between the modeled and observed surface temperatures at Ingøy is 0.6 °C. With such an acceptance level the model is correct in 27 out of 33 points for the time series considered.

  20. SR-Site groundwater flow modelling methodology, setup and results

    Energy Technology Data Exchange (ETDEWEB)

    Selroos, Jan-Olof (Swedish Nuclear Fuel and Waste Management Co., Stockholm (Sweden)); Follin, Sven (SF GeoLogic AB, Taeby (Sweden))

    2010-12-15

    As a part of the license application for a final repository for spent nuclear fuel at Forsmark, the Swedish Nuclear Fuel and Waste Management Company (SKB) has undertaken three groundwater flow modelling studies. These are performed within the SR-Site project and represent time periods with different climate conditions. The simulations carried out contribute to the overall evaluation of the repository design and long-term radiological safety. Three time periods are addressed; the Excavation and operational phases, the Initial period of temperate climate after closure, and the Remaining part of the reference glacial cycle. The present report is a synthesis of the background reports describing the modelling methodology, setup, and results. It is the primary reference for the conclusions drawn in a SR-Site specific context concerning groundwater flow during the three climate periods. These conclusions are not necessarily provided explicitly in the background reports, but are based on the results provided in these reports. The main results and comparisons presented in the present report are summarised in the SR-Site Main report.

  1. Geochemical controls on shale groundwaters: Results of reaction path modeling

    Energy Technology Data Exchange (ETDEWEB)

    Von Damm, K.L.; VandenBrook, A.J.

    1989-03-01

    The EQ3NR/EQ6 geochemical modeling code was used to simulate the reaction of several shale mineralogies with different groundwater compositions in order to elucidate changes that may occur in both the groundwater compositions, and rock mineralogies and compositions under conditions which may be encountered in a high-level radioactive waste repository. Shales with primarily illitic or smectitic compositions were the focus of this study. The reactions were run at the ambient temperatures of the groundwaters and to temperatures as high as 250/degree/C, the approximate temperature maximum expected in a repository. All modeling assumed that equilibrium was achieved and treated the rock and water assemblage as a closed system. Graphite was used as a proxy mineral for organic matter in the shales. The results show that the presence of even a very small amount of reducing mineral has a large influence on the redox state of the groundwaters, and that either pyrite or graphite provides essentially the same results, with slight differences in dissolved C, Fe and S concentrations. The thermodynamic data base is inadequate at the present time to fully evaluate the speciation of dissolved carbon, due to the paucity of thermodynamic data for organic compounds. In the illitic cases the groundwaters resulting from interaction at elevated temperatures are acid, while the smectitic cases remain alkaline, although the final equilibrium mineral assemblages are quite similar. 10 refs., 8 figs., 15 tabs.

  2. Multi-Model Combination techniques for Hydrological Forecasting: Application to Distributed Model Intercomparison Project Results

    Energy Technology Data Exchange (ETDEWEB)

    Ajami, N K; Duan, Q; Gao, X; Sorooshian, S

    2005-04-11

    This paper examines several multi-model combination techniques: the Simple Multi-model Average (SMA), the Multi-Model Super Ensemble (MMSE), Modified Multi-Model Super Ensemble (M3SE) and the Weighted Average Method (WAM). These model combination techniques were evaluated using the results from the Distributed Model Intercomparison Project (DMIP), an international project sponsored by the National Weather Service (NWS) Office of Hydrologic Development (OHD). All of the multi-model combination results were obtained using uncalibrated DMIP model outputs and were compared against the best uncalibrated as well as the best calibrated individual model results. The purpose of this study is to understand how different combination techniques affect the skill levels of the multi-model predictions. This study revealed that the multi-model predictions obtained from uncalibrated single model predictions are generally better than any single member model predictions, even the best calibrated single model predictions. Furthermore, more sophisticated multi-model combination techniques that incorporated bias correction steps work better than simple multi-model average predictions or multi-model predictions without bias correction.

  3. ITER CS Model Coil and CS Insert Test Results

    Energy Technology Data Exchange (ETDEWEB)

    Martovetsky, N; Michael, P; Minervina, J; Radovinsky, A; Takayasu, M; Thome, R; Ando, T; Isono, T; Kato, T; Nakajima, H; Nishijima, G; Nunoya, Y; Sugimoto, M; Takahashi, Y; Tsuji, H; Bessette, D; Okuno, K; Ricci, M

    2000-09-07

    The Inner and Outer modules of the Central Solenoid Model Coil (CSMC) were built by US and Japanese home teams in collaboration with European and Russian teams to demonstrate the feasibility of a superconducting Central Solenoid for ITER and other large tokamak reactors. The CSMC mass is about 120 t, OD is about 3.6 m and the stored energy is 640 MJ at 46 kA and peak field of 13 T. Testing of the CSMC and the CS Insert took place at Japan Atomic Energy Research Institute (JAERI) from mid March until mid August 2000. This paper presents the main results of the tests performed.

  4. Results of the benchmark for blade structural models, part A

    DEFF Research Database (Denmark)

    Lekou, D.J.; Chortis, D.; Belen Fariñas, A.;

    2013-01-01

    Task 2.2 of the InnWind.Eu project. The benchmark is based on the reference wind turbine and the reference blade provided by DTU [1]. "Structural Concept developers/modelers" of WP2 were provided with the necessary input for a comparison numerical simulation run, upon definition of the reference blade......A benchmark on structural design methods for blades was performed within the InnWind.Eu project under WP2 “Lightweight Rotor” Task 2.2 “Lightweight structural design”. The present document is describes the results of the comparison simulation runs that were performed by the partners involved within...

  5. Model independent analysis of dark energy I: Supernova fitting result

    CERN Document Server

    Gong, Y

    2004-01-01

    The nature of dark energy is a mystery to us. This paper uses the supernova data to explore the property of dark energy by some model independent methods. We first Talyor expanded the scale factor $a(t)$ to find out the deceleration parameter $q_0<0$. This result just invokes the Robertson-Walker metric. Then we discuss several different parameterizations used in the literature. We find that $\\Omega_{\\rm DE0}$ is almost less than -1 at $1\\sigma$ level. We also find that the transition redshift from deceleration phase to acceleration phase is $z_{\\rm T}\\sim 0.3$.

  6. Preliminary results of steel containment vessel model test

    Energy Technology Data Exchange (ETDEWEB)

    Luk, V.K.; Hessheimer, M.F. [Sandia National Labs., Albuquerque, NM (United States); Matsumoto, T.; Komine, K.; Arai, S. [Nuclear Power Engineering Corp., Tokyo (Japan); Costello, J.F. [Nuclear Regulatory Commission, Washington, DC (United States)

    1998-04-01

    A high pressure test of a mixed-scaled model (1:10 in geometry and 1:4 in shell thickness) of a steel containment vessel (SCV), representing an improved boiling water reactor (BWR) Mark II containment, was conducted on December 11--12, 1996 at Sandia National Laboratories. This paper describes the preliminary results of the high pressure test. In addition, the preliminary post-test measurement data and the preliminary comparison of test data with pretest analysis predictions are also presented.

  7. Suggested safeguards an

    African Journals Online (AJOL)

    MJM Venter

    ... COORDINATION. (FACILITATION OR CASE MANAGEMENT) IN SOUTH AFRICA ... SUGGESTED SAFEGUARDS AND LIMITATIONS FOR EFFECTIVE AND .... professional practice.27 They have to assess the situation; educate the parents.

  8. Multi-Model Combination Techniques for Hydrological Forecasting: Application to Distributed Model Intercomparison Project Results

    Energy Technology Data Exchange (ETDEWEB)

    Ajami, N; Duan, Q; Gao, X; Sorooshian, S

    2006-05-08

    This paper examines several multi-model combination techniques: the Simple Multimodel Average (SMA), the Multi-Model Super Ensemble (MMSE), Modified Multi-Model Super Ensemble (M3SE) and the Weighted Average Method (WAM). These model combination techniques were evaluated using the results from the Distributed Model Intercomparison Project (DMIP), an international project sponsored by the National Weather Service (NWS) Office of Hydrologic Development (OHD). All of the multi-model combination results were obtained using uncalibrated DMIP model outputs and were compared against the best uncalibrated as well as the best calibrated individual model results. The purpose of this study is to understand how different combination techniques affect the skill levels of the multi-model predictions. This study revealed that the multi-model predictions obtained from uncalibrated single model predictions are generally better than any single member model predictions, even the best calibrated single model predictions. Furthermore, more sophisticated multi-model combination techniques that incorporated bias correction steps work better than simple multi-model average predictions or multi-model predictions without bias correction.

  9. Impact Flash Physics: Modeling and Comparisons With Experimental Results

    Science.gov (United States)

    Rainey, E.; Stickle, A. M.; Ernst, C. M.; Schultz, P. H.; Mehta, N. L.; Brown, R. C.; Swaminathan, P. K.; Michaelis, C. H.; Erlandson, R. E.

    2015-12-01

    horizontal. High-speed radiometer measurements were made of the time-dependent impact flash at wavelengths of 350-1100 nm. We will present comparisons between these measurements and the output of APL's model. The results of this validation allow us to determine basic relationships between observed optical signatures and impact conditions.

  10. Subsea Permafrost Climate Modeling - Challenges and First Results

    Science.gov (United States)

    Rodehacke, C. B.; Stendel, M.; Marchenko, S. S.; Christensen, J. H.; Romanovsky, V. E.; Nicolsky, D.

    2015-12-01

    Recent observations indicate that the East Siberian Arctic Shelf (ESAS) releases methane, which stems from shallow hydrate seabed reservoirs. The total amount of carbon within the ESAS is so large that release of only a small fraction, for example via taliks, which are columns of unfrozen sediment within the permafrost, could impact distinctly the global climate. Therefore it is crucial to simulate the future fate of ESAS' subsea permafrost with regard to changing atmospheric and oceanic conditions. However only very few attempts to address the vulnerability of subsea permafrost have been made, instead most studies have focused on the evolution of permafrost since the Late Pleistocene ocean transgression, approximately 14000 years ago.In contrast to land permafrost modeling, any attempt to model the future fate of subsea permafrost needs to consider several additional factors, in particular the dependence of freezing temperature on water depth and salt content and the differences in ground heat flux depending on the seabed properties. Also the amount of unfrozen water in the sediment needs to be taken into account. Using a system of coupled ocean, atmosphere and permafrost models will allow us to capture the complexity of the different parts of the system and evaluate the relative importance of different processes. Here we present the first results of a novel approach by means of dedicated permafrost model simulations. These have been driven by conditions of the Laptev Sea region in East Siberia. By exploiting the ensemble approach, we will show how uncertainties in boundary conditions and applied forcing scenarios control the future fate of the sub sea permafrost.

  11. DARK STARS: IMPROVED MODELS AND FIRST PULSATION RESULTS

    Energy Technology Data Exchange (ETDEWEB)

    Rindler-Daller, T.; Freese, K. [Department of Physics and Michigan Center for Theoretical Physics, University of Michigan, Ann Arbor, MI 48109 (United States); Montgomery, M. H.; Winget, D. E. [Department of Astronomy, McDonald Observatory and Texas Cosmology Center, University of Texas, Austin, TX 78712 (United States); Paxton, B. [Kavli Insitute for Theoretical Physics, University of California, Santa Barbara, CA 93106 (United States)

    2015-02-01

    We use the stellar evolution code MESA to study dark stars (DSs). DSs, which are powered by dark matter (DM) self-annihilation rather than by nuclear fusion, may be the first stars to form in the universe. We compute stellar models for accreting DSs with masses up to 10{sup 6} M {sub ☉}. The heating due to DM annihilation is self-consistently included, assuming extended adiabatic contraction of DM within the minihalos in which DSs form. We find remarkably good overall agreement with previous models, which assumed polytropic interiors. There are some differences in the details, with positive implications for observability. We found that, in the mass range of 10{sup 4}-10{sup 5} M {sub ☉}, our DSs are hotter by a factor of 1.5 than those in Freese et al., are smaller in radius by a factor of 0.6, denser by a factor of three to four, and more luminous by a factor of two. Our models also confirm previous results, according to which supermassive DSs are very well approximated by (n = 3)-polytropes. We also perform a first study of DS pulsations. Our DS models have pulsation modes with timescales ranging from less than a day to more than two years in their rest frames, at z ∼ 15, depending on DM particle mass and overtone number. Such pulsations may someday be used to identify bright, cool objects uniquely as DSs; if properly calibrated, they might, in principle, also supply novel standard candles for cosmological studies.

  12. Convergence results for a coarsening model using global linearization

    CERN Document Server

    Gallay, T; Gallay, Th.

    2002-01-01

    We study a coarsening model describing the dynamics of interfaces in the one-dimensional Allen-Cahn equation. Given a partition of the real line into intervals of length greater than one, the model consists in constantly eliminating the shortest interval of the partition by merging it with its two neighbors. We show that the mean-field equation for the time-dependent distribution of interval lengths can be explicitly solved using a global linearization transformation. This allows us to derive rigorous results on the long-time asymptotics of the solutions. If the average length of the intervals is finite, we prove that all distributions approach a uniquely determined self-similar solution. We also obtain global stability results for the family of self-similar profiles which correspond to distributions with infinite expectation. eliminating the shortest interval of the partition by merging it with its two neighbors. We show that the mean-field equation for the time-dependent distribution of interval lengths can...

  13. Compressible Turbulent Channel Flows: DNS Results and Modeling

    Science.gov (United States)

    Huang, P. G.; Coleman, G. N.; Bradshaw, P.; Rai, Man Mohan (Technical Monitor)

    1994-01-01

    The present paper addresses some topical issues in modeling compressible turbulent shear flows. The work is based on direct numerical simulation of two supersonic fully developed channel flows between very cold isothermal walls. Detailed decomposition and analysis of terms appearing in the momentum and energy equations are presented. The simulation results are used to provide insights into differences between conventional time-and Favre-averaging of the mean-flow and turbulent quantities. Study of the turbulence energy budget for the two cases shows that the compressibility effects due to turbulent density and pressure fluctuations are insignificant. In particular, the dilatational dissipation and the mean product of the pressure and dilatation fluctuations are very small, contrary to the results of simulations for sheared homogeneous compressible turbulence and to recent proposals for models for general compressible turbulent flows. This provides a possible explanation of why the Van Driest density-weighted transformation is so successful in correlating compressible boundary layer data. Finally, it is found that the DNS data do not support the strong Reynolds analogy. A more general representation of the analogy is analysed and shown to match the DNS data very well.

  14. Manufacturer's Suggested Retail Prices

    NARCIS (Netherlands)

    Rosenkranz, S.

    2003-01-01

    Based on arguments of the `reference- dependent' theory of consumer choice we assume that a retailer's discount of a manufacturer's suggested retail price changes consumers' demand. We can show that the producer benefits from suggesting a retail price. If consumers are additionally sufficiently `los

  15. Consultation and illness behaviour in response to symptoms: A comparison of models from different disciplinary frameworks and suggestions for future research directions

    NARCIS (Netherlands)

    Wyke, S.; Adamson, J.; Dixon, D.; Hunt, K.

    2013-01-01

    We all get ill and social scientific interest in how we respond - the study of illness behaviour - continues unabated. Existing models are useful, but have been developed and applied within disciplinary silos, resulting in wasted intellectual and empirical effort and an absence of accumulation of kn

  16. Structural models of zebrafish (Danio rerio NOD1 and NOD2 NACHT domains suggest differential ATP binding orientations: insights from computational modeling, docking and molecular dynamics simulations.

    Directory of Open Access Journals (Sweden)

    Jitendra Maharana

    Full Text Available Nucleotide-binding oligomerization domain-containing protein 1 (NOD1 and NOD2 are cytosolic pattern recognition receptors playing pivotal roles in innate immune signaling. NOD1 and NOD2 recognize bacterial peptidoglycan derivatives iE-DAP and MDP, respectively and undergoes conformational alternation and ATP-dependent self-oligomerization of NACHT domain followed by downstream signaling. Lack of structural adequacy of NACHT domain confines our understanding about the NOD-mediated signaling mechanism. Here, we predicted the structure of NACHT domain of both NOD1 and NOD2 from model organism zebrafish (Danio rerio using computational methods. Our study highlighted the differential ATP binding modes in NOD1 and NOD2. In NOD1, γ-phosphate of ATP faced toward the central nucleotide binding cavity like NLRC4, whereas in NOD2 the cavity was occupied by adenine moiety. The conserved 'Lysine' at Walker A formed hydrogen bonds (H-bonds and Aspartic acid (Walker B formed electrostatic interaction with ATP. At Sensor 1, Arg328 of NOD1 exhibited an H-bond with ATP, whereas corresponding Arg404 of NOD2 did not. 'Proline' of GxP motif (Pro386 of NOD1 and Pro464 of NOD2 interacted with adenine moiety and His511 at Sensor 2 of NOD1 interacted with γ-phosphate group of ATP. In contrast, His579 of NOD2 interacted with the adenine moiety having a relatively inverted orientation. Our findings are well supplemented with the molecular interaction of ATP with NLRC4, and consistent with mutagenesis data reported for human, which indicates evolutionary shared NOD signaling mechanism. Together, this study provides novel insights into ATP binding mechanism, and highlights the differential ATP binding modes in zebrafish NOD1 and NOD2.

  17. Numerical Results of 3-D Modeling of Moon Accumulation

    Science.gov (United States)

    Khachay, Yurie; Anfilogov, Vsevolod; Antipin, Alexandr

    2014-05-01

    For the last time for the model of the Moon usually had been used the model of mega impact in which the forming of the Earth and its sputnik had been the consequence of the Earth's collision with the body of Mercurial mass. But all dynamical models of the Earth's accumulation and the estimations after the Pb-Pb system, lead to the conclusion that the duration of the planet accumulation was about 1 milliard years. But isotopic results after the W-Hf system testify about a very early (5-10) million years, dividing of the geochemical reservoirs of the core and mantle. In [1,2] it is shown, that the account of energy dissipating by the decay of short living radioactive elements and first of all Al26,it is sufficient for heating even small bodies with dimensions about (50-100) km up to the iron melting temperature and can be realized a principal new differentiation mechanism. The inner parts of the melted preplanets can join and they are mainly of iron content, but the cold silicate fragments return to the supply zone and additionally change the content of Moon forming to silicates. Only after the increasing of the gravitational radius of the Earth, the growing area of the future Earth's core can save also the silicate envelope fragments [3]. For understanding the further system Earth-Moon evolution it is significant to trace the origin and evolution of heterogeneities, which occur on its accumulation stage.In that paper we are modeling the changing of temperature,pressure,velocity of matter flowing in a block of 3d spherical body with a growing radius. The boundary problem is solved by the finite-difference method for the system of equations, which include equations which describe the process of accumulation, the Safronov equation, the equation of impulse balance, equation Navier-Stocks, equation for above litho static pressure and heat conductivity in velocity-pressure variables using the Businesque approach.The numerical algorithm of the problem solution in velocity

  18. High mortality of blue, humpback and fin whales from modeling of vessel collisions on the U.S. West Coast suggests population impacts and insufficient protection.

    Science.gov (United States)

    Rockwood, R Cotton; Calambokidis, John; Jahncke, Jaime

    2017-01-01

    Mortality from collisions with vessels is one of the main human causes of death for large whales. Ship strikes are rarely witnessed and the distribution of strike risk and estimates of mortality remain uncertain at best. We estimated ship strike mortality for blue humpback and fin whales in U.S. West Coast waters using a novel application of a naval encounter model. Mortality estimates from the model were far higher than current minimum estimates derived from stranding records and are closer to extrapolations adjusted for detection probabilities of dead whales. Our most conservative model estimated mortality to be 7.8x, 2.0x and 2.7x the U.S. recommended limit for blue, humpback and fin whales, respectively, suggesting that death from vessel collisions may be a significant impediment to population growth and recovery. Comparing across the study area, the majority of strike mortality occurs in waters off California, from Bodega Bay south and tends to be concentrated in a band approximately 24 Nm (44.5 km) offshore and in designated shipping lanes leading to and from major ports. While some mortality risk exists across nearly all West Coast waters, 74%, 82% and 65% of blue, humpback and fin whale mortality, respectively, occurs in just 10% of the study area, suggesting conservation efforts can be very effective if focused in these waters. Risk is highest in the shipping lanes off San Francisco and Long Beach, but only a fraction of total estimated mortality occurs in these proportionally small areas, making any conservation efforts exclusively within these areas insufficient to address overall strike mortality. We recommend combining shipping lane modifications and re-locations, ship speed reductions and creation of 'Areas to be Avoided' by vessels in ecologically important locations to address this significant source of whale mortality.

  19. Open to Suggestion.

    Science.gov (United States)

    Journal of Reading, 1984

    1984-01-01

    Contributors offer suggestions concerning parents as reading stimulators, book discussions, a test bank for the secondary school/college reading lab, standardized reading tests, television reading, plagiarism, vocabulary development, and book reports. (FL)

  20. Open To Suggestion.

    Science.gov (United States)

    Journal of Reading, 1988

    1988-01-01

    Suggests class activities in three short articles including: (1) "Students Evaluate Reading," by Lenore Sandel; (2) "Solving Verbal Analogies," by Edward J. Dwyer; and (3) "Becoming Testwise," by Dean Schoen. (RS)

  1. Comparison of blade-strike modeling results with empirical data

    Energy Technology Data Exchange (ETDEWEB)

    Ploskey, Gene R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Carlson, Thomas J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2004-03-01

    This study is the initial stage of further investigation into the dynamics of injury to fish during passage through a turbine runner. As part of the study, Pacific Northwest National Laboratory (PNNL) estimated the probability of blade strike, and associated injury, as a function of fish length and turbine operating geometry at two adjacent turbines in Powerhouse 1 of Bonneville Dam. Units 5 and 6 had identical intakes, stay vanes, wicket gates, and draft tubes, but Unit 6 had a new runner and curved discharge ring to minimize gaps between the runner hub and blades and between the blade tips and discharge ring. We used a mathematical model to predict blade strike associated with two Kaplan turbines and compared results with empirical data from biological tests conducted in 1999 and 2000. Blade-strike models take into consideration the geometry of the turbine blades and discharges as well as fish length, orientation, and distribution along the runner. The first phase of this study included a sensitivity analysis to consider the effects of difference in geometry and operations between families of turbines on the strike probability response surface. The analysis revealed that the orientation of fish relative to the leading edge of a runner blade and the location that fish pass along the blade between the hub and blade tip are critical uncertainties in blade-strike models. Over a range of discharges, the average prediction of injury from blade strike was two to five times higher than average empirical estimates of visible injury from shear and mechanical devices. Empirical estimates of mortality may be better metrics for comparison to predicted injury rates than other injury measures for fish passing at mid-blade and blade-tip locations.

  2. Position-sensitive transition edge sensor modeling and results

    Energy Technology Data Exchange (ETDEWEB)

    Hammock, Christina E-mail: chammock@milkyway.gsfc.nasa.gov; Figueroa-Feliciano, Enectali; Apodaca, Emmanuel; Bandler, Simon; Boyce, Kevin; Chervenak, Jay; Finkbeiner, Fred; Kelley, Richard; Lindeman, Mark; Porter, Scott; Saab, Tarek; Stahle, Caroline

    2004-03-11

    We report the latest design and experimental results for a Position-Sensitive Transition-Edge Sensor (PoST). The PoST is motivated by the desire to achieve a larger field-of-view without increasing the number of readout channels. A PoST consists of a one-dimensional array of X-ray absorbers connected on each end to a Transition Edge Sensor (TES). Position differentiation is achieved through a comparison of pulses between the two TESs and X-ray energy is inferred from a sum of the two signals. Optimizing such a device involves studying the available parameter space which includes device properties such as heat capacity and thermal conductivity as well as TES read-out circuitry parameters. We present results for different regimes of operation and the effects on energy resolution, throughput, and position differentiation. Results and implications from a non-linear model developed to study the saturation effects unique to PoSTs are also presented.

  3. 苏宁云商商业模式分析及发展建议%Analysis of Commercial Model and Developing Suggestions about Suning

    Institute of Scientific and Technical Information of China (English)

    王喆薇

    2015-01-01

    With the rapid development of online shopping and the rise of electronic commerce, more and more enterprises into the internet. At the same time, with the rapid development of e-commerce, the online retail industry has also brought impact onto the traditional retail industry, promoting the innovation of the business model. Suning was produced under such a background. Firstly, analyzing Suning model, found the innovation and mode of operation, and then discusses the existing cloud business model, and finally development suggestions are put forward.%随着网购的兴起和电子商务的蓬勃发展,越来越多的企业涌上互联网。在电子商务快速发展的同时,网上零售业也给传统零售业带来了冲击,促使其创新商业模式。苏宁云商就是在这样一种背景下产生的。文章首先对苏宁云商的商业模式进行分析,发现其创新点和运作方式,然后探讨云商模式存在的问题,最后对苏宁云商的未来提出发展建议。

  4. Disentangling unisensory from fusion effects in the attentional modulation of McGurk effects: a Bayesian modeling study suggests that fusion is attention-dependent

    DEFF Research Database (Denmark)

    Schwartz, Jean-Luc; Tiiippana, Kaisa; Andersen, Tobias

    2010-01-01

    The McGurk effect has been shown to be modulated by attention. However, it remains unclear whether attentional effects are due to changes in unisensory processing or in the fusion mechanism. In this paper, we used published experimental data showing that distraction of visual attention weakens th...... Selection criterion. Our findings suggest that distraction of visual attention affects fusion by decreasing the weight of the visual input.......The McGurk effect has been shown to be modulated by attention. However, it remains unclear whether attentional effects are due to changes in unisensory processing or in the fusion mechanism. In this paper, we used published experimental data showing that distraction of visual attention weakens...... the McGurk effect, to fit either the Fuzzy Logical Model of Perception (FLMP) in which the fusion mechanism is fixed, or a variant of it in which the fusion mechanism could be varied depending on attention. The latter model was associated with a larger likelihood when assessed with a Bayesian Model...

  5. Dark Stars: Improved Models and First Pulsation Results

    CERN Document Server

    Rindler-Daller, Tanja; Freese, Katherine; Winget, Donald E; Paxton, Bill

    2014-01-01

    (Abridged) We use the stellar evolution code MESA to study dark stars. Dark stars (DSs), which are powered by dark matter (DM) self-annihilation rather than by nuclear fusion, may be the first stars to form in the Universe. We compute stellar models for accreting DSs with masses up to 10^6 M_sun. While previous calculations were limited to polytropic interiors, our current calculations use MESA, a modern stellar evolution code to solve the equations of stellar structure. The heating due to DM annihilation is self-consistently included, assuming extended adiabatic contraction of DM within the minihalos in which DSs form. We find remarkably good overall agreement with the basic results of previous models. There are some differences, however, in the details, with positive implications for observability of DSs. We found that, in the mass range of 10^4 - 10^5 M_sun, using MESA, our DSs are hotter by a factor of 1.5 than those in Freese et al.(2010), are smaller in radius by a factor of 0.6, denser by a factor of 3...

  6. MODELING RESULTS FROM CESIUM ION EXCHANGE PROCESSING WITH SPHERICAL RESINS

    Energy Technology Data Exchange (ETDEWEB)

    Nash, C.; Hang, T.; Aleman, S.

    2011-01-03

    Ion exchange modeling was conducted at the Savannah River National Laboratory to compare the performance of two organic resins in support of Small Column Ion Exchange (SCIX). In-tank ion exchange (IX) columns are being considered for cesium removal at Hanford and the Savannah River Site (SRS). The spherical forms of resorcinol formaldehyde ion exchange resin (sRF) as well as a hypothetical spherical SuperLig{reg_sign} 644 (SL644) are evaluated for decontamination of dissolved saltcake wastes (supernates). Both SuperLig{reg_sign} and resorcinol formaldehyde resin beds can exhibit hydraulic problems in their granular (nonspherical) forms. SRS waste is generally lower in potassium and organic components than Hanford waste. Using VERSE-LC Version 7.8 along with the cesium Freundlich/Langmuir isotherms to simulate the waste decontamination in ion exchange columns, spherical SL644 was found to reduce column cycling by 50% for high-potassium supernates, but sRF performed equally well for the lowest-potassium feeds. Reduced cycling results in reduction of nitric acid (resin elution) and sodium addition (resin regeneration), therefore, significantly reducing life-cycle operational costs. These findings motivate the development of a spherical form of SL644. This work demonstrates the versatility of the ion exchange modeling to study the effects of resin characteristics on processing cycles, rates, and cold chemical consumption. The value of a resin with increased selectivity for cesium over potassium can be assessed for further development.

  7. Dipole model test with one superconducting coil; results analysed

    CERN Document Server

    Durante, M; Ferracin, P; Fessia, P; Gauthier, R; Giloux, C; Guinchard, M; Kircher, F; Manil, P; Milanese, A; Millot, J-F; Muñoz Garcia, J-E; Oberli, L; Perez, J-C; Pietrowicz, S; Rifflet, J-M; de Rijk, G; Rondeaux, F; Todesco, E; Viret, P; Ziemianski, D

    2013-01-01

    This report is the deliverable report 7.3.1 “Dipole model test with one superconducting coil; results analysed “. The report has four parts: “Design report for the dipole magnet”, “Dipole magnet structure tested in LN2”, “Nb3Sn strand procured for one dipole magnet” and “One test double pancake copper coil made”. The 4 report parts show that, although the magnet construction will be only completed by end 2014, all elements are present for a successful completion. Due to the importance of the project for the future of the participants and given the significant investments done by the participants, there is a full commitment to finish the project.

  8. Dipole model test with one superconducting coil: results analysed

    CERN Document Server

    Bajas, H; Benda, V; Berriaud, C; Bajko, M; Bottura, L; Caspi, S; Charrondiere, M; Clément, S; Datskov, V; Devaux, M; Durante, M; Fazilleau, P; Ferracin, P; Fessia, P; Gauthier, R; Giloux, C; Guinchard, M; Kircher, F; Manil, P; Milanese, A; Millot, J-F; Muñoz Garcia, J-E; Oberli, L; Perez, J-C; Pietrowicz, S; Rifflet, J-M; de Rijk, G; Rondeaux, F; Todesco, E; Viret, P; Ziemianski, D

    2013-01-01

    This report is the deliverable report 7.3.1 “Dipole model test with one superconducting coil; results analysed “. The report has four parts: “Design report for the dipole magnet”, “Dipole magnet structure tested in LN2”, “Nb3Sn strand procured for one dipole magnet” and “One test double pancake copper coil made”. The 4 report parts show that, although the magnet construction will be only completed by end 2014, all elements are present for a successful completion. Due to the importance of the project for the future of the participants and given the significant investments done by the participants, there is a full commitment to finish the project.

  9. Further Results on Dynamic Additive Hazard Rate Model

    Directory of Open Access Journals (Sweden)

    Zhengcheng Zhang

    2014-01-01

    Full Text Available In the past, the proportional and additive hazard rate models have been investigated in the works. Nanda and Das (2011 introduced and studied the dynamic proportional (reversed hazard rate model. In this paper we study the dynamic additive hazard rate model, and investigate its aging properties for different aging classes. The closure of the model under some stochastic orders has also been investigated. Some examples are also given to illustrate different aging properties and stochastic comparisons of the model.

  10. Mouse Model of Neurological Complications Resulting from Encephalitic Alphavirus Infection

    Science.gov (United States)

    Ronca, Shannon E.; Smith, Jeanon; Koma, Takaaki; Miller, Magda M.; Yun, Nadezhda; Dineley, Kelly T.; Paessler, Slobodan

    2017-01-01

    Long-term neurological complications, termed sequelae, can result from viral encephalitis, which are not well understood. In human survivors, alphavirus encephalitis can cause severe neurobehavioral changes, in the most extreme cases, a schizophrenic-like syndrome. In the present study, we aimed to adapt an animal model of alphavirus infection survival to study the development of these long-term neurological complications. Upon low-dose infection of wild-type C57B/6 mice, asymptomatic and symptomatic groups were established and compared to mock-infected mice to measure general health and baseline neurological function, including the acoustic startle response and prepulse inhibition paradigm. Prepulse inhibition is a robust operational measure of sensorimotor gating, a fundamental form of information processing. Deficits in prepulse inhibition manifest as the inability to filter out extraneous sensory stimuli. Sensory gating is disrupted in schizophrenia and other mental disorders, as well as neurodegenerative diseases. Symptomatic mice developed deficits in prepulse inhibition that lasted through 6 months post infection; these deficits were absent in asymptomatic or mock-infected groups. Accompanying prepulse inhibition deficits, symptomatic animals exhibited thalamus damage as visualized with H&E staining, as well as increased GFAP expression in the posterior complex of the thalamus and dentate gyrus of the hippocampus. These histological changes and increased GFAP expression were absent in the asymptomatic and mock-infected animals, indicating that glial scarring could have contributed to the prepulse inhibition phenotype observed in the symptomatic animals. This model provides a tool to test mechanisms of and treatments for the neurological sequelae of viral encephalitis and begins to delineate potential explanations for the development of such sequelae post infection.

  11. Attitudes to Suggestions

    Institute of Scientific and Technical Information of China (English)

    PETER; JOHNSON

    2007-01-01

    As an Australian expat teaching English in China for over four years, I often encourage my students to not only learn the English language but also try to understand Western culture. This includes the fact that Westerners frequently initiate proactive suggestions on any aspects of soci-

  12. A Duality Result for the Generalized Erlang Risk Model

    Directory of Open Access Journals (Sweden)

    Lanpeng Ji

    2014-11-01

    Full Text Available In this article, we consider the generalized Erlang risk model and its dual model. By using a conditional measure-preserving correspondence between the two models, we derive an identity for two interesting conditional probabilities. Applications to the discounted joint density of the surplus prior to ruin and the deficit at ruin are also discussed.

  13. On the evaluation of box model results: the case of BOXURB model.

    Science.gov (United States)

    Paschalidou, A K; Kassomenos, P A

    2009-08-01

    In the present paper, the BOXURB model results, as they occurred in the Greater Area of Athens after model application on an hourly basis for the 10-year period 1995-2004, are evaluated both in time and space in the light of observed pollutant concentrations time series from 17 monitoring stations. The evaluation is performed at a total, monthly, daily and hourly scale. The analysis also includes evaluation of the model performance with regard to the meteorological parameters. Finally, the model is evaluated as an air quality forecasting and urban planning tool. Given the simplicity of the model and the complexity of the area topography, the model results are found to be in good agreement with the measured pollutant concentrations, especially in the heavy traffic stations. Therefore, the model can be used for regulatory purposes by authorities for time-efficient, simple and reliable estimation of air pollution levels within city boundaries.

  14. An alternative model for within plate basalts generation suggested by their major elements, trace elements and Pb-Sr-Nd isotope compositions

    Science.gov (United States)

    Mashima, H.

    2003-12-01

    Based on geochemistry, the recent favor model for within-plate basalts (WPB) is plumes with eclogite originally formed by inversion of basaltic oceanic crust into eclogite in subduction zones (e.g. Hauri, 1996). Melting experiments of basalt/peridotie hybrids (Kogiso and Takahashi, 1998), however, have demonstrated that the hybrid source model could not explain major element features of WPB, such as FeO* enrichment and Al2O3 depletion compared with MORB. Melting experiments of peridotites and basalt/peridotite hybrids indicate that the sources of WPB are peridotites abnormally enriched in FeO*. Such Fe-rich sources could not be formed by extraction of basalt melt from typical peridotite or mixing of basalt and typical peridotite. A potential candidate for the abnormally Fe-rich source is Archean peridotitic komatiite (APK) which is enriched in FeO* compared with typical peridotite. Attractive features of the recycled APK melting model are as follows: 1) It explains why within-plate basalts are FeO*-rich and Al2O3-poor relative to MORB because of large proportion of cpx in APK. 2) Moderate partial melting of APK forms LREE-enriched partial melts because of selective fusion of cpx. 3) It explains near bulk earth Nd isotope compositions because of relatively flat REE patterns of APK. 4) Archean age of APK is consistent with Pb isotope ofWPB suggesting their sources have Archean age. 5) Compositional spectrum of Archean komatiite suites ranging from peridotitic komatiite to basalts explains that of WPB from silica-under saturated basalt to silica-oversaturated andesite.

  15. Infrared thermography for CFRP inspection: computational model and experimental results

    Science.gov (United States)

    Fernandes, Henrique C.; Zhang, Hai; Morioka, Karen; Ibarra-Castanedo, Clemente; López, Fernando; Maldague, Xavier P. V.; Tarpani, José R.

    2016-05-01

    Infrared Thermography (IRT) is a well-known Non-destructive Testing (NDT) technique. In the last decades, it has been widely applied in several fields including inspection of composite materials (CM), specially the fiber-reinforced polymer matrix ones. Consequently, it is important to develop and improve efficient NDT techniques to inspect and assess the quality of CM parts in order to warranty airworthiness and, at the same time, reduce costs of airline companies. In this paper, active IRT is used to inspect carbon fiber-reinforced polymer (CFRP) at laminate with artificial inserts (built-in sample) placed on different layers prior to the manufacture. Two optical active IRT are used. The first is pulsed thermography (PT) which is the most widely utilized IRT technique. The second is a line-scan thermography (LST) technique: a dynamic technique, which can be employed for the inspection of materials by heating a component, line-by-line, while acquiring a series of thermograms with an infrared camera. It is especially suitable for inspection of large parts as well as complex shaped parts. A computational model developed using COMSOL Multiphysics® was used in order to simulate the inspections. Sequences obtained from PT and LST were processed using principal component thermography (PCT) for comparison. Results showed that it is possible to detect insertions of different sizes at different depths using both PT and LST IRT techniques.

  16. Suggestions for Teaching Practice

    Institute of Scientific and Technical Information of China (English)

    ZHAN Na-na

    2013-01-01

    Teacher development and teaching practice(TP) have caught the eyes of researchers at home and abroad for many years. Many western scholars hold that reflective teaching is an efficient way to promote teacher development, but traditional TP is prevailing in China. Based on the merits and demerits of traditional TP and reflective TP, the author hopes to provide some suggestions for the people involved to promote the development of teacher education.

  17. Spin-1 Ising model on tetrahedron recursive lattices: Exact results

    Science.gov (United States)

    Jurčišinová, E.; Jurčišin, M.

    2016-11-01

    We investigate the ferromagnetic spin-1 Ising model on the tetrahedron recursive lattices. An exact solution of the model is found in the framework of which it is shown that the critical temperatures of the second order phase transitions of the model are driven by a single equation simultaneously on all such lattices. It is also shown that this general equation for the critical temperatures is equivalent to the corresponding polynomial equation for the model on the tetrahedron recursive lattice with arbitrary given value of the coordination number. The explicit form of these polynomial equations is shown for the lattices with the coordination numbers z = 6, 9, and 12. In addition, it is shown that the thermodynamic properties of all possible physical phases of the model are also completely driven by the corresponding single equations simultaneously on all tetrahedron recursive lattices. In this respect, the spontaneous magnetization, the free energy, the entropy, and the specific heat of the model are studied in detail.

  18. Droplet Reaction and Evaporation of Agents Model (DREAM). Glass model results; Sand model plans

    NARCIS (Netherlands)

    Hin, A.R.T.

    2006-01-01

    The Agent Fate Program is generating an extensive set of quality agent fate data which is being used to develop highly accurate secondary evaporation predictive models. Models are being developed that cover a wide range of traditional chemical warfare agents deposited onto surfaces routinely found o

  19. Base composition at mtDNA boundaries suggests a DNA triple helix model for human mitochondrial DNA large-scale rearrangements.

    Science.gov (United States)

    Rocher, Christophe; Letellier, Thierry; Copeland, William C; Lestienne, Patrick

    2002-06-01

    Different mechanisms have been proposed to account for mitochondrial DNA (mtDNA) instability based on the presence of short homologous sequences (direct repeats, DR) at the potential boundaries of mtDNA rearrangements. Among them, slippage-mispairing of the replication complex during the asymmetric replication cycle of the mammalian mitochondrial DNA has been proposed to account for the preferential localization of deletions. This mechanism involves a transfer of the replication complex from the first neo-synthesized heavy (H) strand of the DR1, to the DR2, thus bypassing the intervening sequence and producing a deleted molecule. Nevertheless, the nature of the bonds between the DNA strands remains unknown as the forward sequence of DR2, beyond the replication complex, stays double-stranded. Here, we have analyzed the base composition of the DR at the boundaries of mtDNA deletions and duplications and found a skewed pyrimidine content of about 75% in the light-strand DNA template. This suggests the possible building of a DNA triple helix between the G-rich neo-synthesized DR1 and the base-paired homologous G.C-rich DR2. In vitro experiments with the purified human DNA polymerase gamma subunits enabled us to show that the third DNA strand may be used as a primer for DNA replication, using a template with the direct repeat forming a hairpin, with which the primer could initiate DNA replication. These data suggest a novel molecular basis for mitochondrial DNA rearrangements through the distributive nature of the DNA polymerase gamma, at the level of the direct repeats. A general model accounting for large-scale mitochondrial DNA deletion and duplication is proposed. These experiments extend to a DNA polymerase from an eucaryote source the use of a DNA triple helix strand as a primer, like other DNA polymerases from phage and bacterial origins.

  20. Probing the mechanism of amyloidogenesis through a tandem repeat of the PI3-SH3 domain suggests a generic model for protein aggregation and fibril formation.

    Science.gov (United States)

    Bader, Reto; Bamford, Richard; Zurdo, Jesús; Luisi, Ben F; Dobson, Christopher M

    2006-02-10

    Aggregation of the SH3 domain of the PI3 kinase, both as a single domain and as a tandem repeat in which the C terminus of one domain is linked to the N terminus of another by a flexible linker of ten glycine/serine residues, has been studied under a range of conditions in order to investigate the mechanism of protein aggregation and amyloid formation. The tandem repeat was found to form amyloid fibrils much more readily than the single domain under the acidic conditions used here, and the fibrils themselves have higher morphological homogeneity. The folding-unfolding transition of the PI3-SH3 domain shows two-state behaviour and is pH dependent; at pH 3.6, which is near the pH mid-point for folding and only slightly below the isoelectric point of the protein, both the single domain and the tandem repeat spontaneously form broad distributions of soluble oligomers without requirement for nucleation. Under prolonged incubation under these conditions, the oligomers convert into thin, curly fibrils that interact with thioflavin-T, suggesting that they contain an organised beta-sheet structure. Under more acidic conditions (pH 2.0) where the proteins are fully denatured and carry a positive net charge, long, straight fibrils are formed in a process having a pronounced lag phase. The latter was found to be reduced dramatically by the addition of oligomers exceeding a critical size of approximately 20 molecules. The results suggest that the process of aggregation of these SH3 domains can take place by a variety of mechanisms, ranging from downhill formation of relatively amorphous species to nucleated formation of highly organised structures, the relative importance of which varies greatly with solution conditions. Comparison with the behaviour of other amyloidogenic systems suggests that the general mechanistic features outlined here are likely to be common to at least a wide variety of peptides and proteins.

  1. Effect of geometry of rice kernels on drying modeling results

    Science.gov (United States)

    Geometry of rice grain is commonly represented by sphere, spheroid or ellipsoid shapes in the drying models. Models using simpler shapes are easy to solve mathematically, however, deviation from the true grain shape might lead to large errors in predictions of drying characteristics such as, moistur...

  2. Urban traffic noise assessment by combining measurement and model results

    NARCIS (Netherlands)

    Eerden, F.J.M. van der; Graafland, F.; Wessels, P.W.; Basten, T.G.H.

    2013-01-01

    A model based monitoring system is applied on a local scale in an urban area to obtain a better understanding of the traffic noise situation. The system consists of a scalable sensor network and an engineering model. A better understanding is needed to take appropriate and cost efficient measures,

  3. Periodic Integration: Further Results on Model Selection and Forecasting

    NARCIS (Netherlands)

    Ph.H.B.F. Franses (Philip Hans); R. Paap (Richard)

    1996-01-01

    textabstractThis paper considers model selection and forecasting issues in two closely related models for nonstationary periodic autoregressive time series [PAR]. Periodically integrated seasonal time series [PIAR] need a periodic differencing filter to remove the stochastic trend. On the other

  4. Results from modeling and simulation of chemical downstream etch systems

    Energy Technology Data Exchange (ETDEWEB)

    Meeks, E.; Vosen, S.R.; Shon, J.W.; Larson, R.S.; Fox, C.A.; Buchenauer

    1996-05-01

    This report summarizes modeling work performed at Sandia in support of Chemical Downstream Etch (CDE) benchmark and tool development programs under a Cooperative Research and Development Agreement (CRADA) with SEMATECH. The Chemical Downstream Etch (CDE) Modeling Project supports SEMATECH Joint Development Projects (JDPs) with Matrix Integrated Systems, Applied Materials, and Astex Corporation in the development of new CDE reactors for wafer cleaning and stripping processes. These dry-etch reactors replace wet-etch steps in microelectronics fabrication, enabling compatibility with other process steps and reducing the use of hazardous chemicals. Models were developed at Sandia to simulate the gas flow, chemistry and transport in CDE reactors. These models address the essential components of the CDE system: a microwave source, a transport tube, a showerhead/gas inlet, and a downstream etch chamber. The models have been used in tandem to determine the evolution of reactive species throughout the system, and to make recommendations for process and tool optimization. A significant part of this task has been in the assembly of a reasonable set of chemical rate constants and species data necessary for successful use of the models. Often the kinetic parameters were uncertain or unknown. For this reason, a significant effort was placed on model validation to obtain industry confidence in the model predictions. Data for model validation were obtained from the Sandia Molecular Beam Mass Spectrometry (MBMS) experiments, from the literature, from the CDE Benchmark Project (also part of the Sandia/SEMATECH CRADA), and from the JDP partners. The validated models were used to evaluate process behavior as a function of microwave-source operating parameters, transport-tube geometry, system pressure, and downstream chamber geometry. In addition, quantitative correlations were developed between CDE tool performance and operation set points.

  5. Wave-current interactions: model development and preliminary results

    Science.gov (United States)

    Mayet, Clement; Lyard, Florent; Ardhuin, Fabrice

    2013-04-01

    The coastal area concentrates many uses that require integrated management based on diagnostic and predictive tools to understand and anticipate the future of pollution from land or sea, and learn more about natural hazards at sea or activity on the coast. The realistic modelling of coastal hydrodynamics needs to take into account various processes which interact, including tides, surges, and sea state (Wolf [2008]). These processes act at different spatial scales. Unstructured-grid models have shown the ability to satisfy these needs, given that a good mesh resolution criterion is used. We worked on adding a sea state forcing in a hydrodynamic circulation model. The sea state model is the unstructured version of WAVEWATCH III c (Tolman [2008]) (which version is developed at IFREMER, Brest (Ardhuin et al. [2010]) ), and the hydrodynamic model is the 2D barotropic module of the unstructured-grid finite element model T-UGOm (Le Bars et al. [2010]). We chose to use the radiation stress approach (Longuet-Higgins and Stewart [1964]) to represent the effect of surface waves (wind waves and swell) in the barotropic model, as previously done by Mastenbroek et al. [1993]and others. We present here some validation of the model against academic cases : a 2D plane beach (Haas and Warner [2009]) and a simple bathymetric step with analytic solution for waves (Ardhuin et al. [2008]). In a second part we present realistic application in the Ushant Sea during extreme event. References Ardhuin, F., N. Rascle, and K. Belibassakis, Explicit wave-averaged primitive equations using a generalized Lagrangian mean, Ocean Modelling, 20 (1), 35-60, doi:10.1016/j.ocemod.2007.07.001, 2008. Ardhuin, F., et al., Semiempirical Dissipation Source Functions for Ocean Waves. Part I: Definition, Calibration, and Validation, J. Phys. Oceanogr., 40 (9), 1917-1941, doi:10.1175/2010JPO4324.1, 2010. Haas, K. A., and J. C. Warner, Comparing a quasi-3D to a full 3D nearshore circulation model: SHORECIRC and

  6. Similarities in the structure of the transcriptional repressor AmtR in two different space groups suggest a model for the interaction with GlnK.

    Science.gov (United States)

    Sevvana, Madhumati; Hasselt, Kristin; Grau, Florian C; Burkovski, Andreas; Muller, Yves A

    2017-03-01

    AmtR belongs to the TetR family of transcription regulators and is a global nitrogen regulator that is induced under nitrogen-starvation conditions in Corynebacterium glutamicum. AmtR regulates the expression of transporters and enzymes for the assimilation of ammonium and alternative nitrogen sources, for example urea, amino acids etc. The recognition of operator DNA by homodimeric AmtR is not regulated by small-molecule effectors as in other TetR-family members but by a trimeric adenylylated PII-type signal transduction protein named GlnK. The crystal structure of ligand-free AmtR (AmtRorth) has been solved at a resolution of 2.1 Å in space group P21212. Comparison of its quaternary assembly with the previously solved native AmtR structure (PDB entry 5dy1) in a trigonal crystal system (AmtRtri) not only shows how a solvent-content reduction triggers a space-group switch but also suggests a model for how dimeric AmtR might stoichiometrically interact with trimeric adenylylated GlnK.

  7. Box photosynthesis modeling results for WRF/CMAQ LSM

    Data.gov (United States)

    U.S. Environmental Protection Agency — Box Photosynthesis model simulations for latent heat and ozone at 6 different FLUXNET sites. This dataset is associated with the following publication: Ran, L., J....

  8. Review of the dWind Model Conceptual Results

    Energy Technology Data Exchange (ETDEWEB)

    Baring-Gould, Ian; Gleason, Michael; Preus, Robert; Sigrin, Ben

    2015-09-16

    This presentation provides an overview of the dWind model, including its purpose, background, and current status. Baring-Gould presented this material as part of the September 2015 WINDExchange webinar.

  9. Results of the 2013 UT modeling benchmark obtained with models implemented in CIVA

    Energy Technology Data Exchange (ETDEWEB)

    Toullelan, Gwénaël; Raillon, Raphaële; Chatillon, Sylvain [CEA, LIST, 91191Gif-sur-Yvette (France); Lonne, Sébastien [EXTENDE, Le Bergson, 15 Avenue Emile Baudot, 91300 MASSY (France)

    2014-02-18

    The 2013 Ultrasonic Testing (UT) modeling benchmark concerns direct echoes from side drilled holes (SDH), flat bottom holes (FBH) and corner echoes from backwall breaking artificial notches inspected with a matrix phased array probe. This communication presents the results obtained with the models implemented in the CIVA software: the pencilmodel is used to compute the field radiated by the probe, the Kirchhoff approximation is applied to predict the response of FBH and notches and the SOV (Separation Of Variables) model is used for the SDH responses. The comparison between simulated and experimental results are presented and discussed.

  10. Meta-analysis of gene expression patterns in animal models of prenatal alcohol exposure suggests role for protein synthesis inhibition and chromatin remodeling

    Science.gov (United States)

    Rogic, Sanja; Wong, Albertina; Pavlidis, Paul

    2017-01-01

    Background Prenatal alcohol exposure (PAE) can result in an array of morphological, behavioural and neurobiological deficits that can range in their severity. Despite extensive research in the field and a significant progress made, especially in understanding the range of possible malformations and neurobehavioral abnormalities, the molecular mechanisms of alcohol responses in development are still not well understood. There have been multiple transcriptomic studies looking at the changes in gene expression after PAE in animal models, however there is a limited apparent consensus among the reported findings. In an effort to address this issue, we performed a comprehensive re-analysis and meta-analysis of all suitable, publically available expression data sets. Methods We assembled ten microarray data sets of gene expression after PAE in mouse and rat models consisting of samples from a total of 63 ethanol-exposed and 80 control animals. We re-analyzed each data set for differential expression and then used the results to perform meta-analyses considering all data sets together or grouping them by time or duration of exposure (pre- and post-natal, acute and chronic, respectively). We performed network and Gene Ontology enrichment analysis to further characterize the identified signatures. Results For each sub-analysis we identified signatures of differential expressed genes that show support from multiple studies. Overall, the changes in gene expression were more extensive after acute ethanol treatment during prenatal development than in other models. Considering the analysis of all the data together, we identified a robust core signature of 104 genes down-regulated after PAE, with no up-regulated genes. Functional analysis reveals over-representation of genes involved in protein synthesis, mRNA splicing and chromatin organization. Conclusions Our meta-analysis shows that existing studies, despite superficial dissimilarity in findings, share features that allow us

  11. Preliminary results of a three-dimensional radiative transfer model

    Energy Technology Data Exchange (ETDEWEB)

    O`Hirok, W. [Univ. of California, Santa Barbara, CA (United States)

    1995-09-01

    Clouds act as the primary modulator of the Earth`s radiation at the top of the atmosphere, within the atmospheric column, and at the Earth`s surface. They interact with both shortwave and longwave radiation, but it is primarily in the case of shortwave where most of the uncertainty lies because of the difficulties in treating scattered solar radiation. To understand cloud-radiative interactions, radiative transfer models portray clouds as plane-parallel homogeneous entities to ease the computational physics. Unfortunately, clouds are far from being homogeneous, and large differences between measurement and theory point to a stronger need to understand and model cloud macrophysical properties. In an attempt to better comprehend the role of cloud morphology on the 3-dimensional radiation field, a Monte Carlo model has been developed. This model can simulate broadband shortwave radiation fluxes while incorporating all of the major atmospheric constituents. The model is used to investigate the cloud absorption anomaly where cloud absorption measurements exceed theoretical estimates and to examine the efficacy of ERBE measurements and cloud field experiments. 3 figs.

  12. Observations and modeling of northern mid-latitude recurring slope lineae (RSL) suggest recharge by a present-day martian briny aquifer

    Science.gov (United States)

    Stillman, David E.; Michaels, Timothy I.; Grimm, Robert E.; Hanley, Jennifer

    2016-02-01

    Recurring slope lineae (RSL) are narrow (0.5-5 m) dark features on Mars that incrementally lengthen down steep slopes, fade in colder seasons, and recur annually. These features have been identified from the northern to southern mid-latitudes. Here, we describe how observations of northern mid-latitude RSL in northern Chryse Planitia and southwestern Acidalia Planitia (CAP) suggest that brines start flowing before northern spring equinox and continue for more than half a Mars-year (490 ± 40 sols, spanning solar longitude 337° ± 11°-224° ± 20°). All CAP RSL are found on the steep slopes of craters and their source zones are at or below the elevation of the surrounding plains. Spacecraft-derived surface temperature observations cannot resolve individual RSL, so thermal modeling was used to determine that CAP RSL have a freezing temperature of 238-252 K, freeze and melt diurnally, and flow only occurs within the top ∼8 cm of the regolith. Furthermore, we calculate that a typical CAP RSL has a water budget of 1.5-5.6 m3/m of headwall. Therefore, such a large water budget makes annual recharge via atmospheric or subsurface diffusion sources unlikely. Alternatively, we hypothesize that the most plausible RSL source is a briny aquifer with a freezing temperature less than or equal to the mean annual CAP surface temperature (220-225 K). The annual cycle is as follows: in late autumn, the shallowest part of the brine feeding the source zone freezes, forming an ice dam. As spring approaches, temperatures rise and the dam is breached. Brine is discharged and the RSL initially lengthens rapidly (>1.86 m/sol), the lengthening rate then slows considerably, to ∼0.25 m/sol. Eventually, the losses equal the discharge rate and the RSL reaches its equilibrium phase. As brine flows in the RSL some of the water is lost to the atmosphere, therefore the freezing temperature of the brine within the RSL is higher (238-252 K) as the brine transitions to a super-eutectic salt

  13. Learning semantic query suggestions

    NARCIS (Netherlands)

    E. Meij; M. Bron; L. Hollink; B. Huurnink; M. de Rijke

    2009-01-01

    An important application of semantic web technology is recognizing human-defined concepts in text. Query transformation is a strategy often used in search engines to derive queries that are able to return more useful search results than the original query and most popular search engines provide faci

  14. Reply: New results justify open discussion of alternative models

    Science.gov (United States)

    Newman, Andrew; Stein, Seth; Weber, John; Engeln, Joseph; Mao, Aitlin; Dixon, Timothy

    A millennium ago, Jewish sages wrote that “the rivalry of scholars increases wisdom.” In contrast, Schweig et al. (Eos, this issue) demand that “great caution” be exercised in discussing alternatives to their model of high seismic hazard in the New Madrid seismic zone (NMSZ). We find this view surprising; we have no objection to their and their coworkers' extensive efforts promoting their model in a wide variety of public media, but see no reason not to explore a lower-hazard alternative based on both new data and reanalysis of data previously used to justify their model. In our view, the very purpose of collecting new data and reassessing existing data is to promote spirited testing and improvement of existing hypotheses. For New Madrid, such open reexamination seems scientifically appropriate, given the challenge of understanding intraplate earthquakes, and socially desirable because of the public policy implications.

  15. Transmission resonance Raman spectroscopy: experimental results versus theoretical model calculations.

    Science.gov (United States)

    Gonzálvez, Alicia G; González Ureña, Ángel

    2012-10-01

    A laser spectroscopic technique is described that combines transmission and resonance-enhanced Raman inelastic scattering together with low laser power (view, a model for the Raman signal dependence on the sample thickness is also presented. Essentially, the model considers the sample to be homogeneous and describes the underlying physics using only three parameters: the Raman cross-section, the laser-radiation attenuation cross-section, and the Raman signal attenuation cross-section. The model was applied successfully to describe the sample-size dependence of the Raman signal in both β-carotene standards and carrot roots. The present technique could be useful for direct, fast, and nondestructive investigations in food quality control and analytical or physiological studies of animal and human tissues.

  16. Results on a Binding Neuron Model and Their Implications for Modified Hourglass Model for Neuronal Network

    Directory of Open Access Journals (Sweden)

    Viswanathan Arunachalam

    2013-01-01

    Full Text Available The classical models of single neuron like Hodgkin-Huxley point neuron or leaky integrate and fire neuron assume the influence of postsynaptic potentials to last till the neuron fires. Vidybida (2008 in a refreshing departure has proposed models for binding neurons in which the trace of an input is remembered only for a finite fixed period of time after which it is forgotten. The binding neurons conform to the behaviour of real neurons and are applicable in constructing fast recurrent networks for computer modeling. This paper develops explicitly several useful results for a binding neuron like the firing time distribution and other statistical characteristics. We also discuss the applicability of the developed results in constructing a modified hourglass network model in which there are interconnected neurons with excitatory as well as inhibitory inputs. Limited simulation results of the hourglass network are presented.

  17. Some vaccination strategies for the SEIR epidemic model. Preliminary results

    CERN Document Server

    De la Sen, M; Alonso-Quesada, S

    2011-01-01

    This paper presents a vaccination-based control strategy for a SEIR (susceptible plus infected plus infectious plus removed populations) propagation disease model. The model takes into account the total population amounts as a refrain for the illness transmission since its increase makes more difficult contacts among susceptible and infected. The control objective is the asymptotically tracking of the removed-by-immunity population to the total population while achieving simultaneously the remaining population (i.e. susceptible plus infected plus infectious) to asymptotically tend to zero.

  18. Results from Development of Model Specifications for Multifamily Energy Retrofits

    Energy Technology Data Exchange (ETDEWEB)

    Brozyna, K.

    2012-08-01

    Specifications, modeled after CSI MasterFormat, provide the trade contractors and builders with requirements and recommendations on specific building materials, components and industry practices that comply with the expectations and intent of the requirements within the various funding programs associated with a project. The goal is to create a greater level of consistency in execution of energy efficiency retrofits measures across the multiple regions a developer may work. IBACOS and Mercy Housing developed sample model specifications based on a common building construction type that Mercy Housing encounters.

  19. Results From Development of Model Specifications for Multifamily Energy Retrofits

    Energy Technology Data Exchange (ETDEWEB)

    Brozyna, Kevin [IBACOS, Inc., Pittsburgh, PA (United States)

    2012-08-01

    Specifications, modeled after CSI MasterFormat, provide the trade contractors and builders with requirements and recommendations on specific building materials, components and industry practices that comply with the expectations and intent of the requirements within the various funding programs associated with a project. The goal is to create a greater level of consistency in execution of energy efficiency retrofits measures across the multiple regions a developer may work. IBACOS and Mercy Housing developed sample model specifications based on a common building construction type that Mercy Housing encounters.

  20. Some Results On The Modelling Of TSS Manufacturing Lines

    Directory of Open Access Journals (Sweden)

    Viorel MÎNZU

    2000-12-01

    Full Text Available This paper deals with the modelling of a particular class of manufacturing lines, governed by a decentralised control strategy so that they balance themselves. Such lines are known as “bucket brigades” and also as “TSS lines”, after their first implementation, at Toyota, in the 70’s. A first study of their behaviour was based upon modelling as stochastic dynamic systems, which emphasised, in the frame of the so-called “Normative Model”, a sufficient condition for self-balancing, that means for autonomous functioning at a steady production rate (stationary behaviour. Under some particular conditions, a simulation analysis of TSS lines could be made on non-linear block diagrams, showing that the state trajectories are piecewise continuous in between occurrences of certain discrete events, which determine their discontinuity. TSS lines may therefore be modelled as hybrid dynamic systems, more specific, with autonomous switching and autonomous impulses (jumps. A stability analysis of such manufacturing lines is allowed by modelling them as hybrid dynamic systems with discontinuous motions.

  1. Development of in vitro models for investigating spatially fractionated irradiation: physics and biological results

    Science.gov (United States)

    Blockhuys, S; Vanhoecke, B; Paelinck, L; Bracke, M; DeWagter, C

    2009-03-01

    We present different in vitro experimental models which allow us to evaluate the effect of spatially fractionated dose distributions on metabolic activity. We irradiated a monolayer of MCF-7/6 human breast cancer cells with a steep and a smooth 6 MV x-ray dose gradient. In the steep gradient model, we irradiated the cells with three separate small fields. We also developed two smooth gradient models. In the first model, the cells are cultured in a T25 flask and irradiated with a smooth dose gradient over the length of the flask, while in the second one, the cells are cultured in a 96-well plate and also irradiated over the length of the plate. In an attempt to correlate the spatially fractionated dose distributions with metabolic activity, the effect of irradiation was evaluated by means of the MTT assay. This assay is used to determine the metabolic activity by measuring the amount of formazan formed after the conversion of MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) by cellular dehydrogenases. The results obtained with our different models suggest a dose-specific effect on metabolic activity, characterized by an increased formazan optical density occurring in the dose range 1.0-4.0 Gy in the steep dose gradient model and in the dose ranges 4.2-6.5 Gy and 2.3-5.1 Gy in the two smooth dose gradient models. The corresponding times for maximal formazan accumulation were 5-7 days in the steep dose gradient model and day 9-13 and day 9-11 in the smooth dose gradient models. Altogether, our results suggest that the MTT assay may be used as a biological dose-response meter to monitor the radiotherapeutic effectiveness.

  2. Development of in vitro models for investigating spatially fractionated irradiation: physics and biological results

    Energy Technology Data Exchange (ETDEWEB)

    Blockhuys, S; Vanhoecke, B; Bracke, M [Laboratory Experimental Cancer Research, Ghent University Hospital, De Pintelaan 185, B-9000 Gent (Belgium); Paelinck, L; De Wagter, C [Department of Radiotherapy, Ghent University Hospital, De Pintelaan 185, B-9000 Gent (Belgium)], E-mail: Stephanie.Blockhuys@ugent.be

    2009-03-21

    We present different in vitro experimental models which allow us to evaluate the effect of spatially fractionated dose distributions on metabolic activity. We irradiated a monolayer of MCF-7/6 human breast cancer cells with a steep and a smooth 6 MV x-ray dose gradient. In the steep gradient model, we irradiated the cells with three separate small fields. We also developed two smooth gradient models. In the first model, the cells are cultured in a T25 flask and irradiated with a smooth dose gradient over the length of the flask, while in the second one, the cells are cultured in a 96-well plate and also irradiated over the length of the plate. In an attempt to correlate the spatially fractionated dose distributions with metabolic activity, the effect of irradiation was evaluated by means of the MTT assay. This assay is used to determine the metabolic activity by measuring the amount of formazan formed after the conversion of MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) by cellular dehydrogenases. The results obtained with our different models suggest a dose-specific effect on metabolic activity, characterized by an increased formazan optical density occurring in the dose range 1.0-4.0 Gy in the steep dose gradient model and in the dose ranges 4.2-6.5 Gy and 2.3-5.1 Gy in the two smooth dose gradient models. The corresponding times for maximal formazan accumulation were 5-7 days in the steep dose gradient model and day 9-13 and day 9-11 in the smooth dose gradient models. Altogether, our results suggest that the MTT assay may be used as a biological dose-response meter to monitor the radiotherapeutic effectiveness.

  3. Regionalization of climate model results for the North Sea

    Energy Technology Data Exchange (ETDEWEB)

    Kauker, F. [Alfred-Wegener-Institut fuer Polar- und Meeresforschung, Bremerhaven (Germany); Storch, H. von [GKSS-Forschungszentrum Geesthacht GmbH (Germany). Inst. fuer Hydrophysik

    2000-07-01

    A dynamical downscaling for the North Sea is presented. The numerical model used for the study is the coupled ice-ocean model OPYC. In a hindcast of the years 1979 to 1993 it was forced with atmospheric forcing of the ECMWF reanalysis. The models capability in simulating the observed mean state and variability in the North Sea is demonstrated by the hindcast. Two time scale ranges, from weekly to seasonal and the longer-than-seasonal time scales are investigated. Shorter time scales, for storm surges, are not captured by the model formulation. The main modes of variability of sea level, sea-surface circulation, sea-surface temperature, and sea-surface salinity are described and connections to atmospheric phenomena, like the NAO, are discussed. T106 ''time-slice'' simulations with a ''2 x CO{sub 2}'' horizon are used to estimate the effects of a changing climate on the shelf sea ''North Sea''. The ''2 x CO{sub 2}'' changes in the surface forcing are accompanied by changes in the lateral oceanic boundary conditions taken from a global coupled climate model. For ''2 x CO{sub 2}'' the time mean sea level increases up to 25 cm in the German Bight in the winter, where 15 cm are due to the surface forcing and 10 cm due to thermal expansion. This change is compared to the ''natural'' variability as simulated in the ECMWF integration and found to be not outside the range spanned by it. The variability of sea level on the weekly-to-seasonal time-scales is significantly reduced in the scenario integration. The variability on the longer-than-seasonal time-scales in the control and scenario runs is much smaller then in the ECMWF integration. This is traced back to the use of ''time-slice'' experiments. Discriminating between locally forced changes and changes induced at the lateral oceanic boundaries of the model in the circulation and

  4. A Dissipative Model for Hydrogen Storage: Existence and Regularity Results

    CERN Document Server

    Chiodaroli, Elisabetta

    2010-01-01

    We prove global existence of a solution to an initial and boundary value problem for a highly nonlinear PDE system. The problem arises from a termomechanical dissipative model describing hydrogen storage by use of metal hydrides. In order to treat the model from an analytical point of view, we formulate it as a phase transition phenomenon thanks to the introduction of a suitable phase variable. Continuum mechanics laws lead to an evolutionary problem involving three state variables: the temperature, the phase parameter and the pressure. The problem thus consists of three coupled partial differential equations combined with initial and boundary conditions. Existence and regularity of the solutions are here investigated by means of a time discretization-a priori estimate-passage to the limit procedure joined with compactness and monotonicity arguments.

  5. A putative positive feedback regulation mechanism in CsACS2 expression suggests a modified model for sex determination in cucumber (Cucumis sativus L.).

    Science.gov (United States)

    Li, Zheng; Wang, Shu; Tao, Qianyi; Pan, Junsong; Si, Longting; Gong, Zhenhui; Cai, Run

    2012-07-01

    It is well established that the plant hormone ethylene plays a key role in cucumber sex determination. Since the unisexual control gene M was cloned and shown to encode an ethylene synthase, instead of an ethylene receptor, the 'one-hormone hypothesis', which was used to explain the cucumber sex phenotype, has been challenged. Here, the physiological function of CsACS2 (the gene encoded by the M locus) was studied using the transgenic tobacco system. The results indicated that overexpression of CsACS2 increased ethylene production in the tobacco plant, and the native cucumber promoter had no activity in transgenic tobacco (PM). However, when PM plants were treated with exogenous ethylene, CsACS2 expression could be detected. In cucumber, ethylene treatment could also induce transcription of CsACS2, while inhibition of ethylene action reduced the expression level. These findings suggest a positive feedback regulation mechanism for CsACS2, and a modified 'one-hormone hypothesis' for sex determination in cucumber is proposed.

  6. Electrical conductivity of old oceanic mantle in the northwestern Pacific I: 1-D profiles suggesting differences in thermal structure not predictable from a plate cooling model

    Science.gov (United States)

    Baba, Kiyoshi; Tada, Noriko; Matsuno, Tetsuo; Liang, Pengfei; Li, Ruibai; Zhang, Luolei; Shimizu, Hisayoshi; Abe, Natsue; Hirano, Naoto; Ichiki, Masahiro; Utada, Hisashi

    2017-08-01

    Seafloor magnetotelluric (MT) experiments were recently conducted in two areas of the northwestern Pacific to investigate the nature of the old oceanic upper mantle. The areas are far from any tectonic activity, and "normal" mantle structure is therefore expected. The data were carefully analyzed to reduce the effects of coastlines and seafloor topographic changes, which are significant boundaries in electrical conductivity and thus distort seafloor MT data. An isotropic, one-dimensional electrical conductivity profile was estimated for each area. The profiles were compared with those obtained from two previous study areas in the northwestern Pacific. Between the four profiles, significant differences were observed in the thickness of the resistive layer beyond expectations based on cooling of homogeneous oceanic lithosphere over time. This surprising feature is now further clarified from what was suggested in a previous study. To explain the observed spatial variation, dynamic processes must be introduced, such as influence of the plume associated with the formation of the Shatsky Rise, or spatially non-uniform, small-scale convection in the asthenosphere. There is significant room of further investigation to determine a reasonable and comprehensive interpretation of the lithosphere-asthenosphere system beneath the northwestern Pacific. The present results demonstrate that electrical conductivity provides key information for such investigation.[Figure not available: see fulltext.

  7. Vaccination strategies for SEIR models using feedback linearization. Preliminary results

    CERN Document Server

    De la Sen, M; Alonso-Quesada, S

    2011-01-01

    A linearization-based feedback-control strategy for a SEIR epidemic model is discussed. The vaccination objective is the asymptotically tracking of the removed-by-immunity population to the total population while achieving simultaneously the remaining population (i.e. susceptible plus infected plus infectious) to asymptotically tend to zero. The disease controlpolicy is designed based on a feedback linearization technique which provides a general method to generate families of vaccination policies with sound technical background.

  8. Recent results in the NJL model with heavy quarks

    CERN Document Server

    Feldmann, T

    1996-01-01

    We investigate the interplay of chiral and heavy quark symmetries by using the NJL quark model. Heavy quarks with finite masses m(Q) as well as the limit m(Q) to infinity are studied. We found large corrections to the heavy mass scaling law for the pseudoscalar decay constant. The influence of external momenta on the shape parameters of the Isgur-Wise form factor is discussed.

  9. Blade element momentum modeling of inflow with shear in comparison with advanced model results

    DEFF Research Database (Denmark)

    Aagaard Madsen, Helge; Riziotis, V.; Zahle, Frederik

    2012-01-01

    There seems to be a significant uncertainty in aerodynamic and aeroelastic simulations on megawatt turbines operating in inflow with considerable shear, in particular with the engineering blade element momentum (BEM) model, commonly implemented in the aeroelastic design codes used by industry....... Computations with advanced vortex and computational fluid dynamics models are used to provide improved insight into the complex flow phenomena and rotor aerodynamics caused by the sheared inflow. One consistent result from the advanced models is the variation of induced velocity as a function of azimuth when...... a higher power than in uniform flow. On the basis of the consistent azimuthal induction variations seen in the advanced model results, three different BEM implementation methods are discussed and tested in the same aeroelastic code. A full local BEM implementation on an elemental stream tube in both...

  10. The physical model of a terraced plot: first results

    Science.gov (United States)

    Perlotto, Chiara; D'Agostino, Vincenzo; Buzzanca, Giacomo

    2017-04-01

    Terrace building have been expanded in the 19th century because of the increased demographic pressure and the need to crop additional areas at steeper slopes. Terraces are also important to regulate the hydrological behavior of the hillslope. Few studies are available in literature on rainfall-runoff processes and flood risk mitigation in terraced areas. Bench terraces, reducing the terrain slope and the length of the overland flow, quantitatively control the runoff flow velocity, facilitating the drainage and thus leading to a reduction of soil erosion. The study of the hydrologic-hydraulic function of terraced slopes is essential in order to evaluate their possible use to cooperate for flood-risk mitigation also preserving the landscape value. This research aims to better focus the times of the hydrological response, which are determined by a hillslope plot bounded by a dry-stone wall, considering both the overland flow and the groundwater. A physical model, characterized by a quasi-real scale, has been built to reproduce the behavior of a 3% outward sloped terrace at bare soil condition. The model consists of a steel metal box (1 m large, 3.3 m long, 2 m high) containing the hillslope terrain. The terrain is equipped with two piezometers, 9 TDR sensors measuring the volumetric water content, a surface spillway at the head releasing the steady discharge under test, a scale at the wall base to measure the outflowing discharge. The experiments deal with different initial moisture condition (non-saturated and saturated), and discharges of 19.5, 12.0 and 5.0 l/min. Each experiment has been replicated, conducting a total number of 12 tests. The volumetric water content analysis produced by the 9 TDR sensors was able to provide a quite satisfactory representation of the soil moisture during the runs. Then, different lag times at the outlet since the inflow initiation were measured both for runoff and groundwater. Moreover, the time of depletion and the piezometer

  11. A Comparison of Results From NASA's Meteoroid Engineering Model to the LDEF Cratering Record

    Science.gov (United States)

    Ehlert, S.; Moorhead, A.; Cooke, W. J.

    2017-01-01

    NASA's Long Duration Exposure Facility (LDEF) has provided an extensive record of the meteoroid environment in Low Earth Orbit. LDEF's combination of fixed orientation, large collecting area, and long lifetime imposes constraints on the absolute flux of potentially hazardous meteoroids. The relative impact rate on each of LDEF's fourteen surfaces arises from the underlying velocity distribution and directionality of the meteoroid environment. For the first time, we model the meteoroid environment encountered by LDEF over its operational lifetime using NASA's Meteoroid Engineering Model Release 2 (MEMR2) and compare the model results with the observed craters of potentially hazardous meteoroids (i.e. crater diameters larger than approximately 0.6 mm). We discuss the extent to which the observations and model agree and how the impact rates across all of the LDEF surfaces may suggest improvements to the underlying assumptions that go into future versions of MEM.

  12. Modelling nitrogen and phosphorus cycles and dissolved oxygen in the Zhujiang Estuary Ⅱ. Model results

    Institute of Scientific and Technical Information of China (English)

    Guan Weibing; Wong Lai-Ah; Xu Dongfeng

    2001-01-01

    In the present study, the ecosystem-based water quality model was applied to the Pearl River (Zhujiang) Estuary. The model results successfully represent the distribution trend of nutrients and dissolved oxygen both in the horizontal and vertical planes during the flood season, and it shows that the model has taken into consideration the key part of the dynamical, chemical and biological processes existing in the Zhujiang Estuary. The further studies illustrate that nitrogen is in plenty while phosphorus and light limit the phytoplankton biomass in the Zhujiang Estuary during the flood season.

  13. Deepening Sleep by Hypnotic Suggestion

    Science.gov (United States)

    Cordi, Maren J.; Schlarb, Angelika A.; Rasch, Björn

    2014-01-01

    Study Objectives: Slow wave sleep (SWS) plays a critical role in body restoration and promotes brain plasticity; however, it markedly declines across the lifespan. Despite its importance, effective tools to increase SWS are rare. Here we tested whether a hypnotic suggestion to “sleep deeper” extends the amount of SWS. Design: Within-subject, placebo-controlled crossover design. Setting: Sleep laboratory at the University of Zurich, Switzerland. Participants: Seventy healthy females 23.27 ± 3.17 y. Intervention: Participants listened to an auditory text with hypnotic suggestions or a control tape before napping for 90 min while high-density electroencephalography was recorded. Measurements and Results: After participants listened to the hypnotic suggestion to “sleep deeper” subsequent SWS was increased by 81% and time spent awake was reduced by 67% (with the amount of SWS or wake in the control condition set to 100%). Other sleep stages remained unaffected. Additionally, slow wave activity was significantly enhanced after hypnotic suggestions. During the hypnotic tape, parietal theta power increases predicted the hypnosis-induced extension of SWS. Additional experiments confirmed that the beneficial effect of hypnotic suggestions on SWS was specific to the hypnotic suggestion and did not occur in low suggestible participants. Conclusions: Our results demonstrate the effectiveness of hypnotic suggestions to specifically increase the amount and duration of slow wave sleep (SWS) in a midday nap using objective measures of sleep in young, healthy, suggestible females. Hypnotic suggestions might be a successful tool with a lower risk of adverse side effects than pharmacological treatments to extend SWS also in clinical and elderly populations. Citation: Cordi MJ, Schlarb AA, Rasch B. Deepening sleep by hypnotic suggestion. SLEEP 2014;37(6):1143-1152. PMID:24882909

  14. Exact results in modeling planetary atmospheres-III

    Energy Technology Data Exchange (ETDEWEB)

    Pelkowski, J. [Institut fuer Atmosphaere und Umwelt, J.W. Goethe Universitaet Frankfurt, Campus Riedberg, Altenhoferallee 1, D-60438 Frankfurt a.M. (Germany)], E-mail: Pelkowski@meteor.uni-frankfurt.de; Chevallier, L. [Observatoire de Paris-Meudon, Laboratoire LUTH, 5 Place Jules Janssen, 92195 Meudon cedex (France); Rutily, B. [Universite de Lyon, F-69003 Lyon (France); Universite Lyon 1, Observatoire de Lyon, 9 avenue Charles Andre, F-69230 Saint-Genis-Laval (France); CNRS, UMR 5574, Centre de Recherche Astrophysique de Lyon (France); Ecole Normale Superieure de Lyon, F-69007 Lyon (France); Titaud, O. [Centro de Modelamiento Matematico, UMI 2807 CNRS-UChile, Blanco Encalada 2120 - 7 Piso, Casilla 170 - Correo 3, Santiago (Chile)

    2008-01-15

    We apply the semi-gray model of our previous paper to the particular case of the Earth's atmosphere, in order to illustrate quantitatively the inverse problem associated with the direct problem we dealt with before. From given climatological values of the atmosphere's spherical albedo and transmittance for visible radiation, the single-scattering albedo and the optical thickness in the visible are inferred, while the infrared optical thickness is deduced for given global average surface temperature. Eventually, temperature distributions in terms of the infrared optical depth will be shown for a terrestrial atmosphere assumed to be semi-gray and, locally, in radiative and thermodynamic equilibrium.

  15. Exact results in modeling planetary atmospheres-I. Gray atmospheres

    Energy Technology Data Exchange (ETDEWEB)

    Chevallier, L. [Observatoire de Paris-Meudon, Laboratoire LUTH, 5 Place Jules Janssen, 92195 Meudon cedex (France)]. E-mail: loic.chevallier@obspm.fr; Pelkowski, J. [Institut fuer Meteorologie und Geophysik, J.W. Goethe Universitaet Frankfurt, Robert Mayer Strasse 1, D-60325 Frankfurt (Germany); Rutily, B. [Universite de Lyon, Lyon, F-69000 (France) and Universite Lyon 1, Villeurbanne, F-69622 (France) and Centre de Recherche Astronomique de Lyon, Observatoire de Lyon, 9 avenue Charles Andre, Saint-Genis Laval cedex, F-69561 (France) and CNRS, UMR 5574; Ecole Normale Superieure de Lyon, Lyon (France)

    2007-04-15

    An exact model is proposed for a gray, isotropically scattering planetary atmosphere in radiative equilibrium. The slab is illuminated on one side by a collimated beam and is bounded on the other side by an emitting and partially reflecting ground. We provide expressions for the incident and reflected fluxes on both boundary surfaces, as well as the temperature of the ground and the temperature distribution in the atmosphere, assuming the latter to be in local thermodynamic equilibrium. Tables and curves of the temperature distribution are included for various values of the optical thickness. Finally, semi-infinite atmospheres illuminated from the outside or by sources at infinity is dealt with.

  16. Exploring the uncertainties of early detection results: model-based interpretation of mayo lung project

    Directory of Open Access Journals (Sweden)

    Berman Barbara

    2011-03-01

    Full Text Available Abstract Background The Mayo Lung Project (MLP, a randomized controlled clinical trial of lung cancer screening conducted between 1971 and 1986 among male smokers aged 45 or above, demonstrated an increase in lung cancer survival since the time of diagnosis, but no reduction in lung cancer mortality. Whether this result necessarily indicates a lack of mortality benefit for screening remains controversial. A number of hypotheses have been proposed to explain the observed outcome, including over-diagnosis, screening sensitivity, and population heterogeneity (initial difference in lung cancer risks between the two trial arms. This study is intended to provide model-based testing for some of these important arguments. Method Using a micro-simulation model, the MISCAN-lung model, we explore the possible influence of screening sensitivity, systematic error, over-diagnosis and population heterogeneity. Results Calibrating screening sensitivity, systematic error, or over-diagnosis does not noticeably improve the fit of the model, whereas calibrating population heterogeneity helps the model predict lung cancer incidence better. Conclusions Our conclusion is that the hypothesized imperfection in screening sensitivity, systematic error, and over-diagnosis do not in themselves explain the observed trial results. Model fit improvement achieved by accounting for population heterogeneity suggests a higher risk of cancer incidence in the intervention group as compared with the control group.

  17. Large Deviation Results for Generalized Compound Negative Binomial Risk Models

    Institute of Scientific and Technical Information of China (English)

    Fan-chao Kong; Chen Shen

    2009-01-01

    In this paper we extend and improve some results of the large deviation for random sums of random variables.Let {Xn;n≥1} be a sequence of non-negative,independent and identically distributed random variables with common heavy-tailed distribution function F and finite mean μ∈R+,{N(n);n≥0} be a sequence of negative binomial distributed random variables with a parameter p ∈(0,1),n≥0,let {M(n);n≥0} be a Poisson process with intensity λ0.Suppose {N(n);n≥0},{Xn;n≥1} and {M(n);n≥0} are mutually results.These results can be applied to certain problems in insurance and finance.

  18. Modeling of arylamide helix mimetics in the p53 peptide binding site of hDM2 suggests parallel and anti-parallel conformations are both stable.

    Directory of Open Access Journals (Sweden)

    Jonathan C Fuller

    Full Text Available The design of novel α-helix mimetic inhibitors of protein-protein interactions is of interest to pharmaceuticals and chemical genetics researchers as these inhibitors provide a chemical scaffold presenting side chains in the same geometry as an α-helix. This conformational arrangement allows the design of high affinity inhibitors mimicking known peptide sequences binding specific protein substrates. We show that GAFF and AutoDock potentials do not properly capture the conformational preferences of α-helix mimetics based on arylamide oligomers and identify alternate parameters matching solution NMR data and suitable for molecular dynamics simulation of arylamide compounds. Results from both docking and molecular dynamics simulations are consistent with the arylamides binding in the p53 peptide binding pocket. Simulations of arylamides in the p53 binding pocket of hDM2 are consistent with binding, exhibiting similar structural dynamics in the pocket as simulations of known hDM2 binders Nutlin-2 and a benzodiazepinedione compound. Arylamide conformations converge towards the same region of the binding pocket on the 20 ns time scale, and most, though not all dihedrals in the binding pocket are well sampled on this timescale. We show that there are two putative classes of binding modes for arylamide compounds supported equally by the modeling evidence. In the first, the arylamide compound lies parallel to the observed p53 helix. In the second class, not previously identified or proposed, the arylamide compound lies anti-parallel to the p53 helix.

  19. Theoretical Modeling of ISO Results on Planetary Nebula NGC 7027

    Science.gov (United States)

    Yan, M.; Federman, S. R.; Dalgarno, A.; Bjorkman, J. E.

    1999-04-01

    We present a thermal and chemical model of the neutral envelope of planetary nebula NGC 7027. In our model, the neutral envelope is composed of a thin dense shell of constant density and an outer stellar wind region with the usual inverse-square law density profile. The thermal and chemical structure is calculated with the assumption that the incident radiation field on the inner surface equals 0.5×105 times Draine's fit to the average interstellar far-ultraviolet field. The rate coefficient for H2 formation on grains is assumed to be 1/5 the usual value to take into account the lower dust-gas mass ratio in the neutral envelope of NGC 7027. The calculated temperature in the dense shell decreases from 3000 to under 200 K. Once the temperature drops to 200 K, we assume that it remains at 200 K until the outer edge of the dense shell is reached, so that the observed intensities of CO J=16-15, 15-14, and 14-13 lines can be reproduced. The 200 K temperature can be interpreted as the average temperature of the shocked gas just behind the forward shock front in the framework of the interacting stellar wind theory. We calculate the intensities of the molecular far-infrared rotational lines by using a revised version of the escape probability formalism. The theoretical intensities for rotational lines of CO (from J=29-28 to J=14-13), CH+, OH, and CH are shown to be in good agreement with ISO observations. The H2 rovibrational line intensities are also calculated and are in agreement with available observations.

  20. Combining forming results via weld models to powerful numerical assemblies

    NARCIS (Netherlands)

    Kose, K.; Rietman, Bert

    2004-01-01

    Forming simulations generally give satisfying results with respect to thinning, stresses, changed material properties and, with a proper springback calculation, the geometric form. The joining of parts by means of welding yields an extra change of the material properties and the residual stresses.

  1. Combining forming results via weld models to powerful numerical assemblies

    NARCIS (Netherlands)

    Kose, K.; Rietman, B.

    2004-01-01

    Forming simulations generally give satisfying results with respect to thinning, stresses, changed material properties and, with a proper springback calculation, the geometric form. The joining of parts by means of welding yields an extra change of the material properties and the residual stresses. W

  2. Ionospheric Poynting Flux and Joule Heating Modeling Challenge: Latest Results and New Models.

    Science.gov (United States)

    Shim, J. S.; Rastaetter, L.; Kuznetsova, M. M.; Knipp, D. J.; Zheng, Y.; Cosgrove, R. B.; Newell, P. T.; Weimer, D. R.; Fuller-Rowell, T. J.; Wang, W.

    2014-12-01

    Poynting Flux and Joule Heating in the ionosphere - latest results from the challenge and updates at the CCMC. With the addition of satellite tracking and display features in the online analysis tool and at the Community Coordinated Modeling Center (CCMC), we are now able to obtain Poynting flux and Joule heating values from a wide variety of ionospheric models. In addition to Poynting fluxes derived from electric and magnetic field measurements from the Defense Meteorological Satellite Program (DMSP) satellites for a recent modeling challenge, we can now use a Poynting Flux model derived from FAST satellite observations for comparison. Poynting Fluxes are also correlated using Ovation Prime maps of precipitation patterns during the same time periods to assess how "typical" the events in the challenge are.

  3. Modeling Framework and Results to Inform Charging Infrastructure Investments

    Energy Technology Data Exchange (ETDEWEB)

    Melaina, Marc W [National Renewable Energy Laboratory (NREL), Golden, CO (United States); Wood, Eric W [National Renewable Energy Laboratory (NREL), Golden, CO (United States)

    2017-09-01

    The plug-in electric vehicle (PEV) market is experiencing rapid growth with dozens of battery electric (BEV) and plug-in hybrid electric (PHEV) models already available and billions of dollars being invested by automotive manufacturers in the PEV space. Electric range is increasing thanks to larger and more advanced batteries and significant infrastructure investments are being made to enable higher power fast charging. Costs are falling and PEVs are becoming more competitive with conventional vehicles. Moreover, new technologies such as connectivity and automation hold the promise of enhancing the value proposition of PEVs. This presentation outlines a suite of projects funded by the U.S. Department of Energy's Vehicle Technology Office to conduct assessments of the economic value and charging infrastructure requirements of the evolving PEV market. Individual assessments include national evaluations of PEV economic value (assuming 73M PEVs on the road in 2035), national analysis of charging infrastructure requirements (with community and corridor level resolution), and case studies of PEV ownership in Columbus, OH and Massachusetts.

  4. Constraining performance assessment models with tracer test results: a comparison between two conceptual models

    Science.gov (United States)

    McKenna, Sean A.; Selroos, Jan-Olof

    Tracer tests are conducted to ascertain solute transport parameters of a single rock feature over a 5-m transport pathway. Two different conceptualizations of double-porosity solute transport provide estimates of the tracer breakthrough curves. One of the conceptualizations (single-rate) employs a single effective diffusion coefficient in a matrix with infinite penetration depth. However, the tracer retention between different flow paths can vary as the ratio of flow-wetted surface to flow rate differs between the path lines. The other conceptualization (multirate) employs a continuous distribution of multiple diffusion rate coefficients in a matrix with variable, yet finite, capacity. Application of these two models with the parameters estimated on the tracer test breakthrough curves produces transport results that differ by orders of magnitude in peak concentration and time to peak concentration at the performance assessment (PA) time and length scales (100,000 years and 1,000 m). These differences are examined by calculating the time limits for the diffusive capacity to act as an infinite medium. These limits are compared across both conceptual models and also against characteristic times for diffusion at both the tracer test and PA scales. Additionally, the differences between the models are examined by re-estimating parameters for the multirate model from the traditional double-porosity model results at the PA scale. Results indicate that for each model the amount of the diffusive capacity that acts as an infinite medium over the specified time scale explains the differences between the model results and that tracer tests alone cannot provide reliable estimates of transport parameters for the PA scale. Results of Monte Carlo runs of the transport models with varying travel times and path lengths show consistent results between models and suggest that the variation in flow-wetted surface to flow rate along path lines is insignificant relative to variability in

  5. Lowest Astronomical Tide in the North Sea derived from a vertically referenced shallow water model, and an assessment of its suggested sense of safety

    NARCIS (Netherlands)

    Slobbe, D.C.; Klees, R.; Verlaan, M.; Dorst, L.; Gerritsen, H.

    2012-01-01

    In this study, LAT will be modeled relative to a geoid, after which the ellipsoidal heights of LAT will be obtained by adding geoid heights to the modeled LAT values. The use of a geoid instead of MSL has the advantage that the former can be realized everywhere and does not leave a gap along the

  6. Standard Model Higgs results from ATLAS and CMS experiments

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00221190; The ATLAS collaboration

    2016-01-01

    The properties of the Higgs boson particle were measured with the ATLAS and CMS experiments at the LHC at the centre-of-mass energies 7 TeV and 8 TeV. The combined data samples of the ATLAS and CMS experiments were used for the measurements of the Higgs boson mass and couplings. Furthermore, the CP and spin analysis done separately with the CMS and ATLAS experiments are described. Moreover, first results of the Higgs boson cross section at the centre-of-mass energy 13 TeV in the channels H->ZZ->4leptons and H->gamma+gamma with the ATLAS detector are presented.

  7. Molecular modeling and simulation studies of recombinant laccase from Yersinia enterocolitica suggests significant role in the biotransformation of non-steroidal anti-inflammatory drugs.

    Science.gov (United States)

    Singh, Deepti; Rawat, Surender; Waseem, Mohd; Gupta, Sunita; Lynn, Andrew; Nitin, Mukesh; Ramchiary, Nirala; Sharma, Krishna Kant

    2016-01-08

    The YacK gene from Yersinia enterocolitica strain 7, cloned in pET28a vector and expressed in Escherichia coli BL21 (DE3), showed laccase activity when oxidized with 2,2'-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) (ABTS) and guaiacol. The recombinant laccase protein was purified and characterized biochemically with a molecular mass of ≈58 KDa on SDS-PAGE and showed positive zymogram with ABTS. The protein was highly robust with optimum pH 9.0 and stable at 70 °C upto 12 h with residual activity of 70%. Kinetic constants, Km values, for ABTS and guaiacol were 675 μM and 2070 μM, respectively, with corresponding Vmax values of 0.125 μmol/ml/min and 6500 μmol/ml/min. It also possess antioxidative property against BSA and Cu(2+)/H2O2 model system. Constant pH MD simulation studies at different protonation states of the system showed ABTS to be most stable at acidic pH, whereas, diclofenac at neutral pH. Interestingly, aspirin drifted out of the binding pocket at acidic and neutral pH, but showed stable binding at alkaline pH. The biotransformation of diclofenac and aspirin by laccase also corroborated the in silico results. This is the first report on biotransformation of non-steroidal anti-inflammatory drugs (NSAIDs) using recombinant laccase from gut bacteria, supported by in silico simulation studies.

  8. Molecular modeling and simulation studies of recombinant laccase from Yersinia enterocolitica suggests significant role in the biotransformation of non-steroidal anti-inflammatory drugs

    Energy Technology Data Exchange (ETDEWEB)

    Singh, Deepti; Rawat, Surender [Laboratory of Enzymology and Recombinant DNA Technology, Department of Microbiology, Maharshi Dayanand University, Rohtak 124001, Haryana (India); Waseem, Mohd; Gupta, Sunita; Lynn, Andrew [School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067 (India); Nitin, Mukesh; Ramchiary, Nirala [School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067 (India); Sharma, Krishna Kant, E-mail: kekulsharma@gmail.com [Laboratory of Enzymology and Recombinant DNA Technology, Department of Microbiology, Maharshi Dayanand University, Rohtak 124001, Haryana (India)

    2016-01-08

    The YacK gene from Yersinia enterocolitica strain 7, cloned in pET28a vector and expressed in Escherichia coli BL21 (DE3), showed laccase activity when oxidized with 2,2′-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) (ABTS) and guaiacol. The recombinant laccase protein was purified and characterized biochemically with a molecular mass of ≈58 KDa on SDS-PAGE and showed positive zymogram with ABTS. The protein was highly robust with optimum pH 9.0 and stable at 70 °C upto 12 h with residual activity of 70%. Kinetic constants, K{sub m} values, for ABTS and guaiacol were 675 μM and 2070 μM, respectively, with corresponding Vmax values of 0.125 μmol/ml/min and 6500 μmol/ml/min. It also possess antioxidative property against BSA and Cu{sup 2+}/H{sub 2}O{sub 2} model system. Constant pH MD simulation studies at different protonation states of the system showed ABTS to be most stable at acidic pH, whereas, diclofenac at neutral pH. Interestingly, aspirin drifted out of the binding pocket at acidic and neutral pH, but showed stable binding at alkaline pH. The biotransformation of diclofenac and aspirin by laccase also corroborated the in silico results. This is the first report on biotransformation of non-steroidal anti-inflammatory drugs (NSAIDs) using recombinant laccase from gut bacteria, supported by in silico simulation studies. - Highlights: • Laccase from Yersinia enterocolitica strain 7 was expressed in Escherichia coli BL21 (DE3). • Recombinant laccase was found to be thermostable and alkali tolerant. • The in silico and experimental studied proves the biotransformation of NSAIDs. • Laccase binds to ligands differentially under different protonation state. • Laccase also possesses free radical scavenging property.

  9. Modeling of Na airglow emission and first results on the nocturnal variation at midlatitude

    Science.gov (United States)

    Bag, T.; Sunil Krishna, M. V.; Singh, Vir

    2015-12-01

    A model for sodium airglow emission is developed by incorporating all the known reaction mechanisms. The neutral, ionic, and photochemical mechanisms are successfully implemented into this model. The values of reaction rate coefficients are based upon the theoretical calculations as well as from experimental observations. The densities of major species are calculated using the continuity equations, whereas for the minor, intermediating, and short-lived species steady state approximation method is used. The modeled results are validated with the rocket, lidar, and photometer observations for a branching ratio of 0.04 for the production of Na(2P) in the reaction NaO + O → Na(2P, 2S). The inputs have been obtained from other physics-based models and ground- and satellite-based observations to give the combined volume emission rate (VER) of Na airglow between 80 and 110 km altitude. In the present study, the model is used to understand the nocturnal variation of Na VER during the solstice conditions. The model results suggest a variation of peak emission layer between 85 and 90 km during summer solstice condition, indicating a lower value of peak emission rate during summer solstice. The emission rates bear a strong correlation with the O3 density during summer solstice, whereas the magnitude of VER follows the Na density during winter solstice. The altitude of peak VER shows an upward shift of 5 km during winter solstice.

  10. Stress Resultant Based Elasto-Viscoplastic Thick Shell Model

    Directory of Open Access Journals (Sweden)

    Pawel Woelke

    2012-01-01

    Full Text Available The current paper presents enhancement introduced to the elasto-viscoplastic shell formulation, which serves as a theoretical base for the finite element code EPSA (Elasto-Plastic Shell Analysis [1–3]. The shell equations used in EPSA are modified to account for transverse shear deformation, which is important in the analysis of thick plates and shells, as well as composite laminates. Transverse shear forces calculated from transverse shear strains are introduced into a rate-dependent yield function, which is similar to Iliushin's yield surface expressed in terms of stress resultants and stress couples [12]. The hardening rule defined by Bieniek and Funaro [4], which allows for representation of the Bauschinger effect on a moment-curvature plane, was previously adopted in EPSA and is used here in the same form. Viscoplastic strain rates are calculated, taking into account the transverse shears. Only non-layered shells are considered in this work.

  11. High-energy radiation damage in zirconia: modeling results

    Energy Technology Data Exchange (ETDEWEB)

    Zarkadoula, Eva; Devanathan, Ram; Weber, William J.; Seaton, Michael; Todorov, Ilian; Nordlund, Kai; Dove, Martin T.; Trachenko, Kostya

    2014-02-28

    Zirconia has been viewed as a material of exceptional resistance to amorphization by radiation damage, and was consequently proposed as a candidate to immobilize nuclear waste and serve as a nuclear fuel matrix. Here, we perform molecular dynamics simulations of radiation damage in zirconia in the range of 0.1-0.5 MeV energies with the account of electronic energy losses. We find that the lack of amorphizability co-exists with a large number of point defects and their clusters. These, importantly, are largely disjoint from each other and therefore represent a dilute damage that does not result in the loss of long-range structural coherence and amorphization. We document the nature of these defects in detail, including their sizes, distribution and morphology, and discuss practical implications of using zirconia in intense radiation environments.

  12. High-energy radiation damage in zirconia: modeling results

    Energy Technology Data Exchange (ETDEWEB)

    Zarkadoula, Evangelia [Queen Mary, University of London; Devanathan, Ram [Pacific Northwest National Laboratory (PNNL); Weber, William J [ORNL; Seaton, M [Daresbury Laboratory, UK; Todorov, I T [Daresbury Laboratory, UK; Nordlund, Kai [University of Helsinki; Dove, Martin T [Queen Mary, University of London; Trachenko, Kostya [Queen Mary, University of London

    2014-01-01

    Zirconia is viewed as a material of exceptional resistance to amorphization by radiation damage, and consequently proposed as a candidate to immobilize nuclear waste and serve as an inert nuclear fuel matrix. Here, we perform molecular dynamics simulations of radiation damage in zirconia in the range of 0.1-0.5 MeV energies with account of electronic energy losses. We nd that the lack of amorphizability co-exists with a large number of point defects and their clusters. These, importantly, are largely isolated from each other and therefore represent a dilute damage that does not result in the loss of long-range structural coherence and amorphization. We document the nature of these defects in detail, including their sizes, distribution and morphology, and discuss practical implications of using zirconia in intense radiation environments.

  13. High-energy radiation damage in zirconia: Modeling results

    Energy Technology Data Exchange (ETDEWEB)

    Zarkadoula, E., E-mail: zarkadoulae@ornl.gov [School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom); SEPnet, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom); Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 (United States); Devanathan, R. [Nuclear Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352 (United States); Weber, W. J. [Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 (United States); Department of Materials Science and Engineering, University of Tennessee, Knoxville, Tennessee 37996 (United States); Seaton, M. A.; Todorov, I. T. [STFC Daresbury Laboratory, Scientific Computing Department, Keckwick Lane, Daresbury, Warrington, Cheshire WA4 4AD (United Kingdom); Nordlund, K. [University of Helsinki, P.O. Box 43, FIN-00014 Helsinki (Finland); Dove, M. T. [School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom); Trachenko, K. [School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom); SEPnet, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom)

    2014-02-28

    Zirconia is viewed as a material of exceptional resistance to amorphization by radiation damage, and consequently proposed as a candidate to immobilize nuclear waste and serve as an inert nuclear fuel matrix. Here, we perform molecular dynamics simulations of radiation damage in zirconia in the range of 0.1–0.5 MeV energies with account of electronic energy losses. We find that the lack of amorphizability co-exists with a large number of point defects and their clusters. These, importantly, are largely isolated from each other and therefore represent a dilute damage that does not result in the loss of long-range structural coherence and amorphization. We document the nature of these defects in detail, including their sizes, distribution, and morphology, and discuss practical implications of using zirconia in intense radiation environments.

  14. A porosity gradient in 67P/C-G nucleus suggested from CONSERT and SESAME-PP results: an interpretation based on new laboratory permittivity measurements of porous icy analogues.

    Science.gov (United States)

    Brouet, Y.; Levasseur-Regourd, A. C.; Sabouroux, P.; Neves, L.; Encrenaz, P.; Poch, O.; Pommerol, A.; Thomas, N.; Kofman, W.; Le Gall, A.; Ciarletti, V.; Hérique, A.; Lethuillier, A.

    2016-09-01

    The Rosetta spacecraft made a rendezvous with comet 67P/Churyumov-Gerasimenko (67P) in August 2014, soon after the Philae module landed on the small lobe of the nucleus on 12 November 2014. The CONSERT instrument, onboard Rosetta and Philae, sounded the upper part of the interior of 67P with radiowaves at 90 MHz and determined an average of the real part of the permittivity (hereafter ɛ') equal to about 1.27. The SESAME-PP instrument, onboard Philae, sounded the near-surface of the small lobe in the 400-800 Hz range and determined a lower limit of ɛ' equal to 2.45. We use a semi-empirical formula obtained from measurements of ɛ' performed in the laboratory at 243 K on water ice and ice-basaltic dust mixtures, with a controlled porosity in the 31-91% range and a dust-to-ice volumetric ratio in the 0.1-2.8 range, to interpret the results of the two instruments, taking into account the temperature and frequency dependencies. A graphical method is proposed to derive ranges of porosity and dust-mass fraction from a value of ɛ' derived from observations. The non-dispersive behaviour of ɛ' below 175 K, allows us to compare the values of ɛ' obtained by CONSERT and SESAME-PP. We show that the porosity of the small lobe of 67P increases with depth. Based on new measurements of analogues of complex extraterrestrial organic matter, the so-called tholins, we also suggest that, for the dust component in the cometary material, the presence of silicates has more effect on ɛ' than organic materials.

  15. A porosity gradient in 67P/C-G nucleus suggested from CONSERT and SESAME-PP results: an interpretation based on new laboratory permittivity measurements of porous icy analogues

    Science.gov (United States)

    Brouet, Y.; Levasseur-Regourd, A. C.; Sabouroux, P.; Neves, L.; Encrenaz, P.; Poch, O.; Pommerol, A.; Thomas, N.; Kofman, W.; Le Gall, A.; Ciarletti, V.; Hérique, A.; Lethuillier, A.; Carrasco, N.; Szopa, C.

    2016-11-01

    The Rosetta spacecraft made a rendezvous with comet 67P/Churyumov-Gerasimenko (67P) in 2014 August, soon after the Philae module landed on the small lobe of the nucleus on 2014 November 12. The CONSERT instrument, onboard Rosetta and Philae, sounded the upper part of the interior of 67P with radiowaves at 90 MHz and determined an average of the real part of the permittivity (hereafter ɛ΄) equal to about 1.27. The SESAME-PP instrument, onboard Philae, sounded the near-surface of the small lobe in the 400-800 Hz range and determined a lower limit of ɛ΄ equal to 2.45. We use a semi-empirical formula obtained from measurements of ɛ΄ performed in the laboratory at 243 K on water ice and ice-basaltic dust mixtures, with a controlled porosity in the 31-91 per cent range and a dust-to-ice volumetric ratio in the 0.1-2.8 range, to interpret the results of the two instruments, taking into account the temperature and frequency dependences. A graphical method is proposed to derive ranges of porosity and dust-mass fraction from a value of ɛ΄ derived from observations. The non-dispersive behaviour of ɛ΄ below 175 K, allows us to compare the values of ɛ΄ obtained by CONSERT and SESAME-PP. We show that the porosity of the small lobe of 67P increases with depth. Based on new measurements of analogues of complex extraterrestrial organic matter, the so-called tholins, we also suggest that, for the dust component in the cometary material, the presence of silicates has more effect on ɛ΄ than organic materials.

  16. First results from the International Urban Energy Balance Model Comparison: Model Complexity

    Science.gov (United States)

    Blackett, M.; Grimmond, S.; Best, M.

    2009-04-01

    A great variety of urban energy balance models has been developed. These vary in complexity from simple schemes that represent the city as a slab, through those which model various facets (i.e. road, walls and roof) to more complex urban forms (including street canyons with intersections) and features (such as vegetation cover and anthropogenic heat fluxes). Some schemes also incorporate detailed representations of momentum and energy fluxes distributed throughout various layers of the urban canopy layer. The models each differ in the parameters they require to describe the site and the in demands they make on computational processing power. Many of these models have been evaluated using observational datasets but to date, no controlled comparisons have been conducted. Urban surface energy balance models provide a means to predict the energy exchange processes which influence factors such as urban temperature, humidity, atmospheric stability and winds. These all need to be modelled accurately to capture features such as the urban heat island effect and to provide key information for dispersion and air quality modelling. A comparison of the various models available will assist in improving current and future models and will assist in formulating research priorities for future observational campaigns within urban areas. In this presentation we will summarise the initial results of this international urban energy balance model comparison. In particular, the relative performance of the models involved will be compared based on their degree of complexity. These results will inform us on ways in which we can improve the modelling of air quality within, and climate impacts of, global megacities. The methodology employed in conducting this comparison followed that used in PILPS (the Project for Intercomparison of Land-Surface Parameterization Schemes) which is also endorsed by the GEWEX Global Land Atmosphere System Study (GLASS) panel. In all cases, models were run

  17. An interpretation of the CONSERT and SESAME-PP results based on new permittivity measurements of porous water ice and ice-basaltic/organic dust mixtures suggests an increase of porosity with depth in 67P.

    Science.gov (United States)

    Brouet, Yann; Levasseur-Regourd, Anny-Chantal; Sabouroux, Pierre; Neves, Luisa; Encrenaz, Pierre; Poch, Olivier; Pommerol, Antoine; Thomas, Nicolas; Kofman, Wlodek; Le Gall, Alice; Ciarletti, Valérie; Hérique, Alain; Lethuillier, Anthony

    2016-10-01

    The CONSERT bistatic radar on Rosetta and Philae sounded the interior of the small lobe of 67P/C-G at 90 MHz and determined the average of the real part of the complex permittivity (hereafter ɛ') to be equal to 1.27±0.05 [1,2]. The permittivity probe (PP) of the SESAME package sounded the near-surface in the 400-800 Hz range and derived a lower limit of ɛ' equal to 2.45±0.20 [3,4]. At the time of the measurements, the temperature was found to be below 150 K at Philae's location and expected to be close or below 100 K inside the nucleus [4-6].The complex permittivity depends of the frequency, the composition, the porosity and the temperature of the material [7,8,9]. These parameters have to be taken into account to interpret the permittivity values. The non-dispersive behavior of ɛ' below 150 K [9], allows us to compare the CONSERT and SESAME-PP results and to interpret their difference in terms of porosity and/or composition. For this purpose we use a semi-empirical formula obtained from reproducible permittivity measurements performed in the laboratory at 243 K on water ice particles and ice-basaltic dust mixtures [10], with a controlled porosity in the 26-91% range and dust-to-ice volumetric ratios in the 0.1-2.8 range. The influence of the presence of organic materials on ɛ' is also discussed based on new measurements of analogues of complex extraterrestrial organic matter [11]. Our results suggest an increase of the porosity of the small lobe of 67P with depth [11], in agreement Lethuillier et al. [4]'s conclusion using a different method.[1]Kofman et al., 1998. Adv. Space Res., 21, 1589.[2]Ciarletti et al., 2015. A&A, 583, A40.[3]Seidensticker et al., 2007. Space Sci. Rev., 128, 301.[4]Lethuillier et al., 2016. A&A, 591, A32.[5]Spohn et al., 2015. Science, 349, aab0464.[6]Festou et al. (Eds.), Comets II. Univ. of Arizona Press.[7]Campbell and Ulrichs, 1969. J. Geophys. Res., 74, 5867.[8]Brouet et al., 2015. A&A, 583, A39.[9]Mattei et al., 2014. Icarus

  18. PICASSO VISION instrument design, engineering model test results, and flight model development status

    Science.gov (United States)

    Näsilä, Antti; Holmlund, Christer; Mannila, Rami; Näkki, Ismo; Ojanen, Harri J.; Akujärvi, Altti; Saari, Heikki; Fussen, Didier; Pieroux, Didier; Demoulin, Philippe

    2016-10-01

    PICASSO - A PICo-satellite for Atmospheric and Space Science Observations is an ESA project led by the Belgian Institute for Space Aeronomy, in collaboration with VTT Technical Research Centre of Finland Ltd, Clyde Space Ltd. (UK) and Centre Spatial de Liège (BE). The test campaign for the engineering model of the PICASSO VISION instrument, a miniaturized nanosatellite spectral imager, has been successfully completed. The test results look very promising. The proto-flight model of VISION has also been successfully integrated and it is waiting for the final integration to the satellite platform.

  19. Modelling combustion reactions for gas flaring and its resulting emissions

    Directory of Open Access Journals (Sweden)

    O. Saheed Ismail

    2016-07-01

    Full Text Available Flaring of associated petroleum gas is an age long environmental concern which remains unabated. Flaring of gas maybe a very efficient combustion process especially steam/air assisted flare and more economical than utilization in some oil fields. However, it has serious implications for the environment. This study considered different reaction types and operating conditions for gas flaring. Six combustion equations were generated using the mass balance concept with varying air and combustion efficiency. These equations were coded with a computer program using 12 natural gas samples of different chemical composition and origin to predict the pattern of emission species from gas flaring. The effect of key parameters on the emission output is also shown. CO2, CO, NO, NO2 and SO2 are the anticipated non-hydrocarbon emissions of environmental concern. Results show that the quantity and pattern of these chemical species depended on percentage excess/deficiency of stoichiometric air, natural gas type, reaction type, carbon mass content, impurities, combustion efficiency of the flare system etc. These emissions degrade the environment and human life, so knowing the emission types, pattern and flaring conditions that this study predicts is of paramount importance to governments, environmental agencies and the oil and gas industry.

  20. Modelling of a water plasma flow: I. Basic results

    Energy Technology Data Exchange (ETDEWEB)

    KotalIk, Pavel [INP Greifswald, Friedrich-Ludwig-Jahn-Strasse 19, 17489 Greifswald (Germany)

    2006-06-21

    One-fluid MHD equations are numerically solved for an axisymmetric flow of thermal water plasma inside and outside a discharge chamber of a plasma torch with water vortex stabilization of electric arc. Comparisons with experimental data and previous calculations are given. For arc currents of 300-600 A, the respective temperatures and velocities in the range 16 700-26 400 K and 2300-6900 m s{sup -1} are obtained at the centre of the nozzle exit. The flow velocity on axis increases by 1-2 km s{sup -1} in the 5 mm long nozzle. Ohmic heating and radiative losses are two competitive processes influencing most the plasma temperature and velocity. The radiative losses represent 39% to 46% of the torch power of 69-174 kW when optical thickness of 3 mm is assumed for the plasma column. In front of the cathode, inside the discharge chamber, a recirculation zone is predicted and discussed. Effects of the temperature dependence of the plasma viscosity and sound velocity and of the optical thickness are examined. It is shown that the results such as waviness of the Mach number isolines are direct consequences of these dependences. Different lengths of 55 and 60 mm of the water vortex stabilized part of the electric arc do not substantially influence the plasma temperature and velocity at the nozzle exit.

  1. Is expert peer review obsolete? A model suggests that post-publication reader review may exceed the accuracy of traditional peer review.

    Science.gov (United States)

    Herron, Daniel M

    2012-08-01

    The peer review process is the gold standard by which academic manuscripts are vetted for publication. However, some investigators have raised concerns regarding its unopposed supremacy, including lack of expediency, susceptibility to editorial bias and statistical limitation due to the small number of reviewers used. Post-publication review-in which the article is assessed by the general readership of the journal instead of a small group of appointed reviewers-could potentially supplement or replace the peer-review process. In this study, we created a computer model to compare the traditional peer-review process to that of post-publication reader review. We created a mathematical model of the manuscript review process. A hypothetical manuscript was randomly assigned a "true value" representing its intrinsic quality. We modeled a group of three expert peer reviewers and compared it to modeled groups of 10, 20, 50, or 100 reader-reviewers. Reader-reviewers were assumed to be less skillful at reviewing and were thus modeled to be only ¼ as accurate as expert reviewers. Percentage of correct assessments was calculated for each group. 400,000 hypothetical manuscripts were modeled. The accuracy of the reader-reviewer group was inferior to the expert reviewer group in the 10-reviewer trial (93.24% correct vs. 97.67%, p reader-reviewer group surpassed the expert reviewer group in accuracy when 50 or 100 reader-reviewers were used (97.92 and 99.20% respectively, p reader-reviewers can surpass that of a small group of expert reviewers if the group of public reviewers is of sufficient size. Further study will be required to determine whether the mathematical assumptions of this model are valid in actual use.

  2. Chemical and isotopic fractionation of wet andesite in a temperature gradient: Experiments and models suggesting a new mechanism of magma differentiation

    Science.gov (United States)

    Huang, F.; Lundstrom, C. C.; Glessner, J.; Ianno, A.; Boudreau, A.; Li, J.; Ferré, E. C.; Marshak, S.; DeFrates, J.

    2009-02-01

    Piston-cylinder experiments were conducted to investigate the behavior of partially molten wet andesite held within an imposed temperature gradient at 0.5 GPa. In one experiment, homogenous andesite powder (USGS rock standard AGV-1) with 4 wt.% H 2O was sealed in a double capsule assembly for 66 days. The temperature at one end of this charge was held at 950 °C, and the temperature at the other end was kept at 350 °C. During the experiment, thermal migration (i.e., diffusion in a thermal gradient) took place, and the andesite underwent compositional and mineralogical differentiation. The run product can be broadly divided into three portions: (1) the top third, at the hot end, contained 100% melt; (2) the middle-third contained crystalline phases plus progressively less melt; and (3) the bottom third, at the cold end, consisted of a fine-grained, almost entirely crystalline solid of granitic composition. Bulk major- and trace-element compositions change down temperature gradient, reflecting the systematic change in modal mineralogy. These changes mimic differentiation trends produced by fractional crystallization. The change in composition throughout the run product indicates that a fully connected hydrous silicate melt existed throughout the charge, even in the crystalline, cold bottom region. Electron Backscatter Diffraction analysis of the run product indicates that no preferred crystallographic orientation of minerals developed in the run product. However, a significant anisotropy of magnetic susceptibility was observed, suggesting that new crystals of magnetite were elongated in the direction of the thermal gradient. Further, petrographic observation reveals alignment of hornblende parallel to the thermal gradient. Finally, the upper half of the run product shows large systematic variations in Fe-Mg isotopic composition reflecting thermal diffusion, with the hot end systematically enriched in light isotopes. The overall δ 56Fe IRMM-14 and δ 26Mg DSM-3

  3. Error statistics of hidden Markov model and hidden Boltzmann model results

    Directory of Open Access Journals (Sweden)

    Newberg Lee A

    2009-07-01

    Full Text Available Abstract Background Hidden Markov models and hidden Boltzmann models are employed in computational biology and a variety of other scientific fields for a variety of analyses of sequential data. Whether the associated algorithms are used to compute an actual probability or, more generally, an odds ratio or some other score, a frequent requirement is that the error statistics of a given score be known. What is the chance that random data would achieve that score or better? What is the chance that a real signal would achieve a given score threshold? Results Here we present a novel general approach to estimating these false positive and true positive rates that is significantly more efficient than are existing general approaches. We validate the technique via an implementation within the HMMER 3.0 package, which scans DNA or protein sequence databases for patterns of interest, using a profile-HMM. Conclusion The new approach is faster than general naïve sampling approaches, and more general than other current approaches. It provides an efficient mechanism by which to estimate error statistics for hidden Markov model and hidden Boltzmann model results.

  4. Error statistics of hidden Markov model and hidden Boltzmann model results

    Science.gov (United States)

    Newberg, Lee A

    2009-01-01

    Background Hidden Markov models and hidden Boltzmann models are employed in computational biology and a variety of other scientific fields for a variety of analyses of sequential data. Whether the associated algorithms are used to compute an actual probability or, more generally, an odds ratio or some other score, a frequent requirement is that the error statistics of a given score be known. What is the chance that random data would achieve that score or better? What is the chance that a real signal would achieve a given score threshold? Results Here we present a novel general approach to estimating these false positive and true positive rates that is significantly more efficient than are existing general approaches. We validate the technique via an implementation within the HMMER 3.0 package, which scans DNA or protein sequence databases for patterns of interest, using a profile-HMM. Conclusion The new approach is faster than general naïve sampling approaches, and more general than other current approaches. It provides an efficient mechanism by which to estimate error statistics for hidden Markov model and hidden Boltzmann model results. PMID:19589158

  5. Implementing the Simple Biosphere Model (SiB) in a general circulation model: Methodologies and results

    Science.gov (United States)

    Sato, N.; Sellers, P. J.; Randall, D. A.; Schneider, E. K.; Shukla, J.; Kinter, J. L., III; Hou, Y.-T.; Albertazzi, E.

    1989-01-01

    The Simple Biosphere MOdel (SiB) of Sellers et al., (1986) was designed to simulate the interactions between the Earth's land surface and the atmosphere by treating the vegetation explicitly and relistically, thereby incorporating biophysical controls on the exchanges of radiation, momentum, sensible and latent heat between the two systems. The steps taken to implement SiB in a modified version of the National Meteorological Center's spectral GCM are described. The coupled model (SiB-GCM) was used with a conventional hydrological model (Ctl-GCM) to produce summer and winter simulations. The same GCM was used with a conventional hydrological model (Ctl-GCM) to produce comparable 'control' summer and winter variations. It was found that SiB-GCM produced a more realistic partitioning of energy at the land surface than Ctl-GCM. Generally, SiB-GCM produced more sensible heat flux and less latent heat flux over vegetated land than did Ctl-GCM and this resulted in the development of a much deeper daytime planetary boundary and reduced precipitation rates over the continents in SiB-GCM. In the summer simulation, the 200 mb jet stream and the wind speed at 850 mb were slightly weakened in the SiB-GCM relative to the Ctl-GCM results and equivalent analyses from observations.

  6. Transitioning from Student to Teacher in the Master-Apprentice Model of Piano Pedagogy: An Exploratory Study of Challenges, Solutions, Resources, Reflections, and Suggestions for the Future

    Science.gov (United States)

    Slawsky, Melissa Maccarelli

    2011-01-01

    While many music educators learn how to teach through teacher training programs, the standard mode of transmission in which piano teachers learn to teach applied piano is through proficiency of the instrument under the guidance of a master teacher. This tacit development of pedagogical knowledge occurs through the master-apprentice model of…

  7. Transitioning from Student to Teacher in the Master-Apprentice Model of Piano Pedagogy: An Exploratory Study of Challenges, Solutions, Resources, Reflections, and Suggestions for the Future

    Science.gov (United States)

    Slawsky, Melissa Maccarelli

    2011-01-01

    While many music educators learn how to teach through teacher training programs, the standard mode of transmission in which piano teachers learn to teach applied piano is through proficiency of the instrument under the guidance of a master teacher. This tacit development of pedagogical knowledge occurs through the master-apprentice model of…

  8. Higher plant modelling for life support applications: first results of a simple mechanistic model

    Science.gov (United States)

    Hezard, Pauline; Dussap, Claude-Gilles; Sasidharan L, Swathy

    2012-07-01

    In the case of closed ecological life support systems, the air and water regeneration and food production are performed using microorganisms and higher plants. Wheat, rice, soybean, lettuce, tomato or other types of eatable annual plants produce fresh food while recycling CO2 into breathable oxygen. Additionally, they evaporate a large quantity of water, which can be condensed and used as potable water. This shows that recycling functions of air revitalization and food production are completely linked. Consequently, the control of a growth chamber for higher plant production has to be performed with efficient mechanistic models, in order to ensure a realistic prediction of plant behaviour, water and gas recycling whatever the environmental conditions. Purely mechanistic models of plant production in controlled environments are not available yet. This is the reason why new models must be developed and validated. This work concerns the design and test of a simplified version of a mathematical model coupling plant architecture and mass balance purposes in order to compare its results with available data of lettuce grown in closed and controlled chambers. The carbon exchange rate, water absorption and evaporation rate, biomass fresh weight as well as leaf surface are modelled and compared with available data. The model consists of four modules. The first one evaluates plant architecture, like total leaf surface, leaf area index and stem length data. The second one calculates the rate of matter and energy exchange depending on architectural and environmental data: light absorption in the canopy, CO2 uptake or release, water uptake and evapotranspiration. The third module evaluates which of the previous rates is limiting overall biomass growth; and the last one calculates biomass growth rate depending on matter exchange rates, using a global stoichiometric equation. All these rates are a set of differential equations, which are integrated with time in order to provide

  9. PV Performance Modeling Methods and Practices: Results from the 4th PV Performance Modeling Collaborative Workshop.

    Energy Technology Data Exchange (ETDEWEB)

    Stein, Joshua [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2017-03-01

    In 2014, the IEA PVPS Task 13 added the PVPMC as a formal activity to its technical work plan for 2014-2017. The goal of this activity is to expand the reach of the PVPMC to a broader international audience and help to reduce PV performance modeling uncertainties worldwide. One of the main deliverables of this activity is to host one or more PVPMC workshops outside the US to foster more international participation within this collaborative group. This report reviews the results of the first in a series of these joint IEA PVPS Task 13/PVPMC workshops. The 4th PV Performance Modeling Collaborative Workshop was held in Cologne, Germany at the headquarters of TÜV Rheinland on October 22-23, 2015.

  10. A Two-Moment Bulk Microphysics Coupled with a Mesoscale Model WRF: Model Description and First Results

    Institute of Scientific and Technical Information of China (English)

    GAO Wenhua; ZHAO Fengsheng; HU Zhijin; FENG Xua

    2011-01-01

    The Chinese Academy of Meteorological Sciences (CAMS) two-moment bulk microphysics scheme was adopted in this study to investigate the representation of cloud and precipitation processes under different environmental conditions.The scheme predicts the mixing ratio of water vapor as well as the mixing ratios and nnmber concentrations of cloud droplets,rain,ice,snow,and graupel.A new parameterization approach to simulate heterogeneous droplet activation was developed in this scheme.Furthermore,the improved CAMS scheme was coupled with the Weather Research and Forecasting model (WRF v3.1),which made it possible to simulate the microphysics of clouds and precipitation as well as the cloud-aerosol interactions in selected atmospheric condition.The rain event occurring on 27 28 December 2008 in eastern China was simulated using the CAMS scheme and three sophisticated microphysics schemes in the WRF model.Results showed that the simulated 36-h accumulated precipitations were generally agreed with observation data,and the CAMS scheme performed well in the southern area of the nested donain.The radar reflectivity,the averaged precipitation intensity,and the hydrometeor mixing ratios simulated by the CAMS scheme were generally consistent with those from other microphysics schemes.The hydrometeor number concentrations simulated by the CAMS scheme were also close to the experiential values in stratus clouds.The model results suggest that the CAMS scheme performs reasonably well in describing the microphysics of clouds and precipitation in the mesoscale WRF model.

  11. Global blackout following the K/T Chicxulub impact: Results of impact and atmospheric modeling

    Science.gov (United States)

    Pope, K. O.; Ocampo, A. C.; Baines, K. H.; Ivanov, B. A.

    1993-01-01

    Several recent studies have suggested that shock decomposition of anhydrite (CaSO4) target rocks during the K/T Chicxulub impact would have ejected tremendous amounts of sulfur gas into the stratosphere. One of the many potential biospheric effects of this sulfur gas is the generation of a sulfuric acid (H2SO4) aerosol layer capable of causing darkness and severe disruption of photosynthesis for periods of years. In this paper we report the preliminary results of our modeling of shock pressures within the anhydrites and of light attenuation by the H2SO4 aerosol cloud. These models indicate that earlier studies over-estimated the amount of sulfur gas produced, but that more than enough was produced to extend global blackout conditions 4-6 times longer than the approximately 3 month predictions for silicate dust alone.

  12. Discrete Element Modeling Results of Proppant Rearrangement in the Cooke Conductivity Cell

    Energy Technology Data Exchange (ETDEWEB)

    Earl Mattson; Hai Huang; Michael Conway; Lisa O' Connell

    2014-02-01

    The study of propped fracture conductivity began in earnest with the development of the Cooke cell which later became part of the initial API standard. Subsequent developments included a patented multicell design to conduct 4 tests in a press at the same time. Other modifications have been used by various investigators. Recent studies by the Stim-Lab proppant consortium have indicated that the flow field across a Cooke proppant conductivity testing cell may not be uniform as initially believed which resulted is significantly different conductivity results. Post test analysis of low temperature metal alloy injections at the termination of proppant testing prior to the release of the applied stress suggest that higher flow is to be expected along the sides and top of the proppant pack than compared to the middle of the pack. To evaluate these experimental findings, a physics-based two-dimensional (2-D) discrete element model (DEM) was developed and applied to simulate proppant rearrangement during stress loading in the Cooke conductivity cell and the resulting porosity field. Analysis of these simulations are critical to understanding the impact of modification to the testing cell as well as understanding key proppant conductivity issues such as how these effects are manifested in proppant concentration testing results. The 2-D DEM model was constructed to represent a realistic cross section of the Cooke cell with a distribution of four material properties, three that represented the Cooke cell (steel, sandstone,square rings), and one representing the proppant. In principle, Cooke cell materials can be approximated as assemblies of independent discrete elements (particles) of various sizes and material properties that interact via cohesive interactions, repulsive forces, and frictional forces. The macroscopic behavior can then be modeled as the collective behavior of many interacting discrete elements. This DEM model is particularly suitable for modeling proppant

  13. A scaling theory for the size distribution of emitted dust aerosols suggests climate models underestimate the size of the global dust cycle

    CERN Document Server

    Kok, Jasper F

    2010-01-01

    Mineral dust aerosols impact Earth's radiation budget through interactions with clouds, ecosystems, and radiation, which constitutes a substantial uncertainty in understanding past and predicting future climate changes. One of the causes of this large uncertainty is that the size distribution of emitted dust aerosols is poorly understood. The present study shows that regional and global circulation models (GCMs) overestimate the emitted fraction of clay aerosols (< 2 {\\mu}m diameter) by a factor of ~2 - 8 relative to measurements. This discrepancy is resolved by deriving a simple theoretical expression of the emitted dust size distribution that is in excellent agreement with measurements. This expression is based on the physics of the scale-invariant fragmentation of brittle materials, which is shown to be applicable to dust emission. Because clay aerosols produce a strong radiative cooling, the overestimation of the clay fraction causes GCMs to also overestimate the radiative cooling of a given quantity o...

  14. A scaling theory for the size distribution of emitted dust aerosols suggests climate models underestimate the size of the global dust cycle.

    Science.gov (United States)

    Kok, Jasper F

    2011-01-18

    Mineral dust aerosols impact Earth's radiation budget through interactions with clouds, ecosystems, and radiation, which constitutes a substantial uncertainty in understanding past and predicting future climate changes. One of the causes of this large uncertainty is that the size distribution of emitted dust aerosols is poorly understood. The present study shows that regional and global circulation models (GCMs) overestimate the emitted fraction of clay aerosols (climate predictions in dusty regions. On a global scale, the dust cycle in most GCMs is tuned to match radiative measurements, such that the overestimation of the radiative cooling of a given quantity of emitted dust has likely caused GCMs to underestimate the global dust emission rate. This implies that the deposition flux of dust and its fertilizing effects on ecosystems may be substantially larger than thought.

  15. Auditory function in the Tc1 mouse model of down syndrome suggests a limited region of human chromosome 21 involved in otitis media.

    Directory of Open Access Journals (Sweden)

    Stephanie Kuhn

    Full Text Available Down syndrome is one of the most common congenital disorders leading to a wide range of health problems in humans, including frequent otitis media. The Tc1 mouse carries a significant part of human chromosome 21 (Hsa21 in addition to the full set of mouse chromosomes and shares many phenotypes observed in humans affected by Down syndrome with trisomy of chromosome 21. However, it is unknown whether Tc1 mice exhibit a hearing phenotype and might thus represent a good model for understanding the hearing loss that is common in Down syndrome. In this study we carried out a structural and functional assessment of hearing in Tc1 mice. Auditory brainstem response (ABR measurements in Tc1 mice showed normal thresholds compared to littermate controls and ABR waveform latencies and amplitudes were equivalent to controls. The gross anatomy of the middle and inner ears was also similar between Tc1 and control mice. The physiological properties of cochlear sensory receptors (inner and outer hair cells: IHCs and OHCs were investigated using single-cell patch clamp recordings from the acutely dissected cochleae. Adult Tc1 IHCs exhibited normal resting membrane potentials and expressed all K(+ currents characteristic of control hair cells. However, the size of the large conductance (BK Ca(2+ activated K(+ current (I(K,f, which enables rapid voltage responses essential for accurate sound encoding, was increased in Tc1 IHCs. All physiological properties investigated in OHCs were indistinguishable between the two genotypes. The normal functional hearing and the gross structural anatomy of the middle and inner ears in the Tc1 mouse contrast to that observed in the Ts65Dn model of Down syndrome which shows otitis media. Genes that are trisomic in Ts65Dn but disomic in Tc1 may predispose to otitis media when an additional copy is active.

  16. Physiologically based pharmacokinetic modeling of human exposure to perfluorooctanoic acid suggests historical non drinking-water exposures are important for predicting current serum concentrations.

    Science.gov (United States)

    Worley, Rachel Rogers; Yang, Xiaoxia; Fisher, Jeffrey

    2017-09-01

    Manufacturing of perfluorooctanoic acid (PFOA), a synthetic chemical with a long half-life in humans, peaked between 1970 and 2002, and has since diminished. In the United States, PFOA is detected in the blood of >99% of people tested, but serum concentrations have decreased since 1999. Much is known about exposure to PFOA in drinking water; however, the impact of non-drinking water PFOA exposure on serum PFOA concentrations is not well characterized. The objective of this research is to apply physiologically based pharmacokinetic (PBPK) modeling and Monte Carlo analysis to evaluate the impact of historic non-drinking water PFOA exposure on serum PFOA concentrations. In vitro to in vivo extrapolation was utilized to inform descriptions of PFOA transport in the kidney. Monte Carlo simulations were incorporated to evaluate factors that account for the large inter-individual variability of serum PFOA concentrations measured in individuals from North Alabama in 2010 and 2016, and the Mid-Ohio River Valley between 2005 and 2008. Predicted serum PFOA concentrations were within two-fold of experimental data. With incorporation of Monte Carlo simulations, the model successfully tracked the large variability of serum PFOA concentrations measured in populations from the Mid-Ohio River Valley. Simulation of exposure in a population of 45 adults from North Alabama successfully predicted 98% of individual serum PFOA concentrations measured in 2010 and 2016, respectively, when non-drinking water ingestion of PFOA exposure was included. Variation in serum PFOA concentrations may be due to inter-individual variability in the disposition of PFOA and potentially elevated historical non-drinking water exposures. Published by Elsevier Inc.

  17. Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and non-random loss

    Energy Technology Data Exchange (ETDEWEB)

    Lavrov, Dennis V.; Boore, Jeffrey L.; Brown, Wesley M.

    2001-11-08

    We determined the complete mtDNA sequences of the millipedes Narceus annularus and Thyropygus sp. (Arthropoda: Diplopoda) and identified in both genomes all 37 genes typical for metazoan mtDNA. The arrangement of these genes is identical in the two millipedes, but differs from that inferred to be ancestral for arthropods by the location of four genes/gene clusters. This novel gene arrangement is unusual for animal mtDNA, in that genes with opposite transcriptional polarities are clustered in the genome and the two clusters are separated by two non-coding regions. The only exception to this pattern is the gene for cysteine tRNA, which is located in the part of the genome that otherwise contains all genes with the opposite transcriptional polarity. We suggest that a mechanism involving complete mtDNA duplication followed by the loss of genes, predetermined by their transcriptional polarity and location in the genome, could generate this gene arrangement from the one ancestral for arthropods. The proposed mechanism has important implications for phylogenetic inferences that are drawn on the basis of gene arrangement comparisons.

  18. Sea ice thermohaline dynamics and biogeochemistry in the Arctic Ocean: Empirical and model results

    Science.gov (United States)

    Duarte, Pedro; Meyer, Amelie; Olsen, Lasse M.; Kauko, Hanna M.; Assmy, Philipp; Rösel, Anja; Itkin, Polona; Hudson, Stephen R.; Granskog, Mats A.; Gerland, Sebastian; Sundfjord, Arild; Steen, Harald; Hop, Haakon; Cohen, Lana; Peterson, Algot K.; Jeffery, Nicole; Elliott, Scott M.; Hunke, Elizabeth C.; Turner, Adrian K.

    2017-07-01

    Large changes in the sea ice regime of the Arctic Ocean have occurred over the last decades justifying the development of models to forecast sea ice physics and biogeochemistry. The main goal of this study is to evaluate the performance of the Los Alamos Sea Ice Model (CICE) to simulate physical and biogeochemical properties at time scales of a few weeks and to use the model to analyze ice algal bloom dynamics in different types of ice. Ocean and atmospheric forcing data and observations of the evolution of the sea ice properties collected from 18 April to 4 June 2015, during the Norwegian young sea ICE expedition, were used to test the CICE model. Our results show the following: (i) model performance is reasonable for sea ice thickness and bulk salinity; good for vertically resolved temperature, vertically averaged Chl a concentrations, and standing stocks; and poor for vertically resolved Chl a concentrations. (ii) Improving current knowledge about nutrient exchanges, ice algal recruitment, and motion is critical to improve sea ice biogeochemical modeling. (iii) Ice algae may bloom despite some degree of basal melting. (iv) Ice algal motility driven by gradients in limiting factors is a plausible mechanism to explain their vertical distribution. (v) Different ice algal bloom and net primary production (NPP) patterns were identified in the ice types studied, suggesting that ice algal maximal growth rates will increase, while sea ice vertically integrated NPP and biomass will decrease as a result of the predictable increase in the area covered by refrozen leads in the Arctic Ocean.

  19. Long-Term Engagement in Authentic Research with NASA (LEARN): Innovative Practices Suggested By a New Model for Teacher Research Experiences

    Science.gov (United States)

    Pippin, M. R.; Joseph, J. D.; Yang, M. M.; Omar, A. H.; Crecelius, S.; Harte, T.; Lewis, P. M., Jr.; Taylor, J.; Bujosa, R.; Moulton, C.; Haggard, C. S.; Hyater-Adams, S.; Kollmeyer, R.; Weisman, A.

    2014-12-01

    NASA's LEARN Project is an innovative program that provides long-term immersion in the practice of atmospheric science for middle and high school in-service teachers. Working alongside NASA scientists and using authentic NASA Science Mission Directorate research data, teachers develop individual research topics of interest during two weeks in the summer while on-site at NASA Langley. With continued, intensive mentoring by NASA scientists, the teachers further develop their research throughout the academic year through virtual group meetings and data team meetings mirroring scientific collaborations. At the end of the first year, LEARN teachers present scientific posters. The LEARN experience has had such an impact that multiple teachers from the first two cohorts have elected to continue their research. The LEARN project evaluation has provided insights into particularly effective elements of this new approach. Findings indicate that teachers' perceptions of the scientific enterprise have changed, and that LEARN provided substantial resources to help them take real-world research to their students. This presentation will focus on key factors from LEARN's implementation that inform best practices for the incorporation of authentic scientific research into teacher professional development experiences. We suggest that these factors should be considered in the development of other such experiences, including: (1) The involvement of a single scientist as both the project leader/manager and the project scientist, to ensure that the project can meet teachers' needs. (2) An emphasis on framing and approaching scientific research questions, so that teachers can learn to evaluate the feasibility of studies based on scope, scale, and availability of data. (3) Long term, ongoing relationships where teachers and scientists work as collaborators, beyond the workshop "mold." (4) A focus on meeting the needs of individual teachers, whether their needs relate to elements of

  20. A model-based telecoupling analysis for the Patagonian shelf: a new suggested template on how to study global seabirds-fisheries interactions for sustainability

    Science.gov (United States)

    Huettmann, F.; Raya Rey, A.

    2016-12-01

    The Southwest Atlantic Ocean, and the extended Patagonian shelf in particular, presents us with a very complex ecosystem of global relevance for food security and global peace. It is a highly productive area and it maintains a great diversity and abundance of seabird species. Fisheries have been identified as a main stressor for the marine ecosystems and as one of the main causes of seabird population declines. Using the framework of telecoupling - a sophisticated description of natural and socioeconomic interactions over large distances - here we present a fresh holistic look at the dynamic fisheries and (endangered) seabird interactions for the Patagonian shelf. While data are sparse, we employ machine learning-based predictions for a more holistic overview. We found that these waters of the Patagonian Shelf are significantly affected by many nations and outside players. We found that the input, output and spill-over of the Patagonian shelf ecosystem are distributed virtually all over the globe. In addition, we also found `losers' (=nations and their citizens that are left out entirely from this global resource and its governance). Our findings are based on best-available public trade and fish harvest analysis for this region, linked with predictive modeling (machine learning and geographic information systems GIS) to generalize for nine seabird species. We conveniently extend this analysis with a perspective from the financial sector and policy that enables the Patagonian fisheries as international investment and development projects. As increasingly recognized elsewhere, we believe that telecoupling can serve as a new but rather sophisticated study template highlighting wider complexities, bottlenecks and sensitivities for a vastly improved conservation research on oceans and global sustainability questions.

  1. How primordial is the structure of comet 67P/C-G? Combined collisional and dynamical models suggest a late formation

    CERN Document Server

    Jutzi, M; Toliou, A; Morbidelli, A; Brasser, R

    2016-01-01

    There is an active debate about whether the properties of comets as observed today are primordial or, alternatively, if they are a result of collisional evolution or other processes. We investigate the effects of collisions on a comet with a structure like 67P/C-G. We develop scaling laws for the critical specific impact energies required for a significant shape alteration. These are then used in simulations of the combined dynamical and collisional evolution of comets in order to study the survival probability of a primordially formed object with a shape like 67P/C-G. The effects of impacts on comet 67P/C-G are studied using a SPH shock physics code. The resulting critical specific impact energy defines a minimal projectile size which is used to compute the number of shape-changing collisions in a set of dynamical simulations. These simulations follow the dispersion of the trans-Neptunian disk during the giant planet instability, the formation of a scattered disk, and produce 87 objects that penetrate into t...

  2. Comparison of TS and ANN Models with the Results of Emission Scenarios in Rainfall Prediction

    Directory of Open Access Journals (Sweden)

    S. Babaei Hessar

    2016-02-01

    Full Text Available Introduction: Precipitation is one of the most important and sensitive parameters of the tropical climate that influence the catchments hydrological regime. The prediction of rainfall is vital for strategic planning and water resources management. Despite its importance, statistical rainfall forecasting, especially for long-term, has been proven to be a great challenge due to the dynamic nature of climate phenomena and random fluctuations involved in the process. Various methods, such as time series and artificial neural network models, have been proposed to predict the level of rainfall. But there is not enough attention to global warming and climate change issues. The main aim of this study is to investigate the conformity of artificial neural network and time series models with climate scenarios. Materials and Methods: For this study, 50 years of daily rainfall data (1961 to 2010 of the synoptic station of Urmia, Tabriz and Khoy was investigated. Data was obtained from Meteorological Organization of Iran. In the present study, the results of two Artificial Neural Network (ANN and Time Seri (TS methods were compared with the result of the Emission Scenarios (A2 & B1. HadCM3 model in LARS-WG software was used to generate rainfall for the next 18 years (2011-2029. The results of models were compared with climate scenarios over the next 18 years in the three synoptic stations located in the basin of the Lake Urmia. At the first stage, the best model of time series method was selected. The precipitation was estimated for the next 18 years using these models. For the same period, precipitation was forecast using artificial neural networks. Finally, the results of two models were compared with data generated under two scenarios (B1 and A2 in LARS-WG. Results and Discussion: Different order of AR, MA and ARMA was examined to select the best model of TS The results show that AR(1 was suitable for Tabriz and Khoy stations .In the Urmia station MA(1 was

  3. Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs.

    Directory of Open Access Journals (Sweden)

    Christopher D Brown

    Full Text Available Genetic variants in cis-regulatory elements or trans-acting regulators frequently influence the quantity and spatiotemporal distribution of gene transcription. Recent interest in expression quantitative trait locus (eQTL mapping has paralleled the adoption of genome-wide association studies (GWAS for the analysis of complex traits and disease in humans. Under the hypothesis that many GWAS associations tag non-coding SNPs with small effects, and that these SNPs exert phenotypic control by modifying gene expression, it has become common to interpret GWAS associations using eQTL data. To fully exploit the mechanistic interpretability of eQTL-GWAS comparisons, an improved understanding of the genetic architecture and causal mechanisms of cell type specificity of eQTLs is required. We address this need by performing an eQTL analysis in three parts: first we identified eQTLs from eleven studies on seven cell types; then we integrated eQTL data with cis-regulatory element (CRE data from the ENCODE project; finally we built a set of classifiers to predict the cell type specificity of eQTLs. The cell type specificity of eQTLs is associated with eQTL SNP overlap with hundreds of cell type specific CRE classes, including enhancer, promoter, and repressive chromatin marks, regions of open chromatin, and many classes of DNA binding proteins. These associations provide insight into the molecular mechanisms generating the cell type specificity of eQTLs and the mode of regulation of corresponding eQTLs. Using a random forest classifier with cell specific CRE-SNP overlap as features, we demonstrate the feasibility of predicting the cell type specificity of eQTLs. We then demonstrate that CREs from a trait-associated cell type can be used to annotate GWAS associations in the absence of eQTL data for that cell type. We anticipate that such integrative, predictive modeling of cell specificity will improve our ability to understand the mechanistic basis of human

  4. A Novel In Vitro CypD-Mediated p53 Aggregation Assay Suggests a Model for Mitochondrial Permeability Transition by Chaperone Systems.

    Science.gov (United States)

    Lebedev, Ivan; Nemajerova, Alice; Foda, Zachariah H; Kornaj, Maja; Tong, Michael; Moll, Ute M; Seeliger, Markus A

    2016-10-09

    Tissue necrosis as a consequence of ischemia-reperfusion injury and oxidative damage is a leading cause of permanent disability and death worldwide. The complete mechanism by which cells undergo necrosis upon oxidative stress is not understood. In response to an oxidative insult, wild-type p53 has been implicated as a central regulatory component of the mitochondrial permeability transition (mPT), triggering necrosis. This process is associated with cellular stabilization and translocation of p53 into the mitochondrial matrix. Here, we probe the mechanism by which p53 activates the key mPT regulator cyclophilin D (CypD). We explore the involvement of Trap1, an Hsp90-related mitochondrial matrix protein and a member of the mitochondrial unfolded protein response, and its ability to suppress mPT in a p53-dependent manner. Our study finds that catalytically active CypD causes strong aggregation of wild-type p53 protein (both full-length and isolated DNA-binding domain) into amyloid-type fibrils in vitro. The responsible CypD residues for this activity were mapped by NMR to the active site amino acids R55, F60, F113, and W121. The data also present a new proline isomerization assay for CypD by monitoring the aggregation of p53 as an indicator of CypD activity. Moreover, we find that the inhibition of Trap1 by the mitochondria-specific HSP90 ATPase antagonist Gamitrinib strongly sensitizes primary mouse embryonic fibroblasts to mPT and permeability transition pore opening in a p53- and CypD-dependent manner. We propose a mechanism by which the influx of unfolded p53 into the mitochondrial matrix in response to oxidative stress indirectly activates the normally inhibited CypD by displacing it from Trap1 complexes. This activates CypD's isomerase activity. Liberated CypD then isomerizes multiple proteins including p53 (causing p53 aggregation) and the structural components of the mPTP pore, inducing pore opening. This working model can now be tested in the future

  5. The Prevalence of Risk Factors of Coronary Artery Disease in the Patients who Underwent Coronary Artery Bypass Graft, Shiraz, Iran: Suggesting a Model

    Directory of Open Access Journals (Sweden)

    Mohammad Ali Ostovan

    2014-12-01

    Full Text Available Background: Cardiovascular diseases are the main cause of 40% of deaths in Iran annually. Many patients undergoing coronary artery bypass graft surgery have previous cardiovascular risk factors which could be prevented. Objectives: The present study aimed to assess the prevalence of cardiovascular risk factors in the patients undergoing coronary artery bypass graft surgery. Materials and Methods: In this cross-sectional (descriptive – analytical study, a data collecting form was used. A total of 246 patients were selected from six hospitals of Shiraz using random stratification. Descriptive statistics were presented through figures and tables and t-test was used to analyze the continuous variables. All the statistical analyses were performed using the SPSS statistical software (version 15.0. Besides, P < 0.05 was considered as statistically significant. Results: Among the study patients, only 11.67% had no risk factors and 88.33% had one or more risk factors. The most common risk factors observed in the patients were hypertension, obesity and overweight, hyperlipidemia, and diabetes mellitus. The results showed a significant difference between males and females regarding the prevalence of hypertension (P = 0.001, diabetes (P = 0.028, hypercholesterolemia (P = 0.020, and cigarette smoking (P = 0.001. In addition, the patients' mean levels of cholesterol, LDL, triglyceride, and fasting blood sugar were higher than the acceptable level, while that of HDL was lower than the accepted level. Conclusions:: These patients are recommended to be trained regarding lifestyle changes. Also, prevention strategies can play an important role in reducing patient morbidity and mortality.

  6. How modeling can reconcile apparently discrepant experimental results: the case of pacemaking in dopaminergic neurons.

    Directory of Open Access Journals (Sweden)

    Guillaume Drion

    2011-05-01

    Full Text Available Midbrain dopaminergic neurons are endowed with endogenous slow pacemaking properties. In recent years, many different groups have studied the basis for this phenomenon, often with conflicting conclusions. In particular, the role of a slowly-inactivating L-type calcium channel in the depolarizing phase between spikes is controversial, and the analysis of slow oscillatory potential (SOP recordings during the blockade of sodium channels has led to conflicting conclusions. Based on a minimal model of a dopaminergic neuron, our analysis suggests that the same experimental protocol may lead to drastically different observations in almost identical neurons. For example, complete L-type calcium channel blockade eliminates spontaneous firing or has almost no effect in two neurons differing by less than 1% in their maximal sodium conductance. The same prediction can be reproduced in a state of the art detailed model of a dopaminergic neuron. Some of these predictions are confirmed experimentally using single-cell recordings in brain slices. Our minimal model exhibits SOPs when sodium channels are blocked, these SOPs being uncorrelated with the spiking activity, as has been shown experimentally. We also show that block of a specific conductance (in this case, the SK conductance can have a different effect on these two oscillatory behaviors (pacemaking and SOPs, despite the fact that they have the same initiating mechanism. These results highlight the fact that computational approaches, besides their well known confirmatory and predictive interests in neurophysiology, may also be useful to resolve apparent discrepancies between experimental results.

  7. Testing of Subgrid—Scale Stress Models by Using Results from Direct Numerical SImulations

    Institute of Scientific and Technical Information of China (English)

    HongruiGONG

    1998-01-01

    The most commonly used dynamic subgrid models,Germano's model and dynamic kinetic energy model,and their base models-the Smagorinsky model and the kinetic energy model,were tested using results from direct numerical simulations of various turbulent flows.In germano's dynamic model,the model coefficient was treated as a constant within the test filter,This treatment is conceptually inconsistent.An iteration procedure was proposed to calculate the model coefficient and an improved correlation coefficient was found.

  8. Structural and vibrational study of graphene oxide via coronene based models: theoretical and experimental results

    Science.gov (United States)

    Almeida de Mendonça, João Paulo; Henrique de Lima, Alessandro; Amaral Junqueira, Georgia Maria; Gianini Quirino, Welber; Legnani, Cristiano; Oliveira Maciel, Indhira; Sato, Fernando

    2016-05-01

    We use the Coronene (C24H12), a simple and finite molecule, to make a model to study the spectroscopic and structural alterations generated by oxygenated groups in graphene oxide (GO). Based on the Lerf-Klinowski model, we chose the hydroxyl [OH-], the carboxyl [COOH-] and the epoxy [the ring C2O inside the molecule] as our radicals of interest and study their collective and isolated effects. We perform geometry optimization, vibrational IR (via AM1 and DFT-B3LYP) and Raman spectra (via DFT-B3LYP) of a series of functionalized coronene molecules. As results, we obtain some useful data for the analysis of IR and Raman spectra of GO, which facilitate the understanding and identification of the peaks found in the experiment. Finally, we suggest a new model to study GO, producing an accurate signature when compared to our experimental data. Such molecule shows in more details of the structural effects caused by functionalization when compared to experimental data.

  9. Measuring the Topological Susceptibility in a Fixed Sector: Results for Sigma Models

    CERN Document Server

    Bautista, Irais; Dromard, Arthur; Gerber, Urs; Hofmann, Christoph P; Mejía-Díaz, Héctor; Wagner, Marc

    2015-01-01

    For field theories with a topological charge Q, it is often of interest to measure the topological susceptibility chi_t = ( - ^2 ) / V. If we manage to perform a Monte Carlo simulation where Q changes frequently, chi_t can be evaluated directly. However, for local update algorithms and fine lattices, the auto-correlation time with respect to Q tends to be extremely long, which invalidates the direct approach. Nevertheless, the measurement of chi_t is still feasible, even when the entire Markov chain is topologically frozen. We test a method for this purpose, based on the correlation of the topological charge density, as suggested by Aoki, Fukaya, Hashimoto and Onogi. Our studies in non-linear sigma-models yield accurate results for chi_t, which confirm that the method is applicable. Unfortunately, for increasing volume the wanted signal gets rapidly suppressed, and this method requires huge statistics.

  10. Influence of Earth crust composition on continental collision style in Precambrian conditions: Results of supercomputer modelling

    Science.gov (United States)

    Zavyalov, Sergey; Zakharov, Vladimir

    2016-04-01

    A number of issues concerning Precambrian geodynamics still remain unsolved because of uncertainity of many physical (thermal regime, lithosphere thickness, crust thickness, etc.) and chemical (mantle composition, crust composition) parameters, which differed considerably comparing to the present day values. In this work, we show results of numerical supercomputations based on petrological and thermomechanical 2D model, which simulates the process of collision between two continental plates, each 80-160 km thick, with various convergence rates ranging from 5 to 15 cm/year. In the model, the upper mantle temperature is 150-200 ⁰C higher than the modern value, while the continental crust radiogenic heat production is higher than the present value by the factor of 1.5. These settings correspond to Archean conditions. The present study investigates the dependence of collision style on various continental crust parameters, especially on crust composition. The 3 following archetypal settings of continental crust composition are examined: 1) completely felsic continental crust; 2) basic lower crust and felsic upper crust; 3) basic upper crust and felsic lower crust (hereinafter referred to as inverted crust). Modeling results show that collision with completely felsic crust is unlikely. In the case of basic lower crust, a continental subduction and subsequent continental rocks exhumation can take place. Therefore, formation of ultra-high pressure metamorphic rocks is possible. Continental subduction also occurs in the case of inverted continental crust. However, in the latter case, the exhumation of felsic rocks is blocked by upper basic layer and their subsequent interaction depends on their volume ratio. Thus, if the total inverted crust thickness is about 15 km and the thicknesses of the two layers are equal, felsic rocks cannot be exhumed. If the total thickness is 30 to 40 km and that of the felsic layer is 20 to 25 km, it breaks through the basic layer leading to

  11. Comparison of Statistical Multifragmentation Model simulations with Canonical Thermodynamical Model results: a few representative cases

    CERN Document Server

    Botvina, A; Gupta, S Das; Mishustin, I

    2008-01-01

    The statistical multifragmentation model (SMM) has been widely used to explain experimental data of intermediate energy heavy ion collisions. A later entrant in the field is the canonical thermodynamic model (CTM) which is also being used to fit experimental data. The basic physics of both the models is the same, namely that fragments are produced according to their statistical weights in the available phase space. However, they are based on different statistical ensembles, and the methods of calculation are different: while the SMM uses Monte-Carlo simulations, the CTM solves recursion relations. In this paper we compare the predictions of the two models for a few representative cases.

  12. Interpreting Behavioral Genetic Results: Suggestions for Counselors and Clients.

    Science.gov (United States)

    Gatz, Margaret

    1990-01-01

    Contends treatment strategies often are premised on modifying either environmental factors or clients' interpretations of the interpersonal environment, but a more complete analysis would take into account the role played by genetic transmission in an individual's personality. Recommends when developing interventions both counselors and clients…

  13. Regression mixture models : Does modeling the covariance between independent variables and latent classes improve the results?

    NARCIS (Netherlands)

    Lamont, A.E.; Vermunt, J.K.; Van Horn, M.L.

    2016-01-01

    Regression mixture models are increasingly used as an exploratory approach to identify heterogeneity in the effects of a predictor on an outcome. In this simulation study, we tested the effects of violating an implicit assumption often made in these models; that is, independent variables in the

  14. Modeling drifting snow in Antarctica with a regional climate model: 2. Results

    NARCIS (Netherlands)

    Lenaerts, J.T.M.; van den Broeke, M.R.

    2012-01-01

    This paper presents a model study of the impact of drifting snow on the lower atmosphere, surface snow characteristics, and surface mass balance of Antarctica. We use the regional atmospheric climate model RACMO2.1/ANT with a high horizontal resolution (27 km), equipped with a drifting snow routine

  15. Modeling drifting snow in Antarctica with a regional climate model: 2. Results

    NARCIS (Netherlands)

    Lenaerts, J.T.M.|info:eu-repo/dai/nl/314850163; van den Broeke, M.R.|info:eu-repo/dai/nl/073765643

    2012-01-01

    This paper presents a model study of the impact of drifting snow on the lower atmosphere, surface snow characteristics, and surface mass balance of Antarctica. We use the regional atmospheric climate model RACMO2.1/ANT with a high horizontal resolution (27 km), equipped with a drifting snow routine

  16. In Silico Model for Developmental Toxicity: How to Use QSAR Models and Interpret Their Results.

    Science.gov (United States)

    Marzo, Marco; Roncaglioni, Alessandra; Kulkarni, Sunil; Barton-Maclaren, Tara S; Benfenati, Emilio

    2016-01-01

    Modeling developmental toxicity has been a challenge for (Q)SAR model developers due to the complexity of the endpoint. Recently, some new in silico methods have been developed introducing the possibility to evaluate the integration of existing methods by taking advantage of various modeling perspectives. It is important that the model user is aware of the underlying basis of the different models in general, as well as the considerations and assumptions relative to the specific predictions that are obtained from these different models for the same chemical. The evaluation on the predictions needs to be done on a case-by-case basis, checking the analogs (possibly using structural, physicochemical, and toxicological information); for this purpose, the assessment of the applicability domain of the models provides further confidence in the model prediction. In this chapter, we present some examples illustrating an approach to combine human-based rules and statistical methods to support the prediction of developmental toxicity; we also discuss assumptions and uncertainties of the methodology.

  17. Large-scale features of Pliocene climate: results from the Pliocene Model Intercomparison Project

    Directory of Open Access Journals (Sweden)

    A. M. Haywood

    2013-01-01

    Full Text Available Climate and environments of the mid-Pliocene warm period (3.264 to 3.025 Ma have been extensively studied. Whilst numerical models have shed light on the nature of climate at the time, uncertainties in their predictions have not been systematically examined. The Pliocene Model Intercomparison Project quantifies uncertainties in model outputs through a coordinated multi-model and multi-model/data intercomparison. Whilst commonalities in model outputs for the Pliocene are clearly evident, we show substantial variation in the sensitivity of models to the implementation of Pliocene boundary conditions. Models appear able to reproduce many regional changes in temperature reconstructed from geological proxies. However, data/model comparison highlights that models potentially underestimate polar amplification. To assert this conclusion with greater confidence, limitations in the time-averaged proxy data currently available must be addressed. Furthermore, sensitivity tests exploring the known unknowns in modelling Pliocene climate specifically relevant to the high latitudes are essential (e.g. palaeogeography, gateways, orbital forcing and trace gasses. Estimates of longer-term sensitivity to CO2 (also known as Earth System Sensitivity; ESS, support previous work suggesting that ESS is greater than Climate Sensitivity (CS, and suggest that the ratio of ESS to CS is between 1 and 2, with a "best" estimate of 1.5.

  18. Recent results of searches for beyond Standard Model physics in ATLAS

    CERN Document Server

    Serkin, Leonid; The ATLAS collaboration

    2017-01-01

    Recent results of searches for beyond Standard Model physics in ATLAS are presented, with particular focus on searches for new phenomena in high jet multiplicity final states. No significant excess are observed and limits are set on several signal models.

  19. The MARINA model (Model to Assess River Inputs of Nutrients to seAs): Model description and results for China.

    Science.gov (United States)

    Strokal, Maryna; Kroeze, Carolien; Wang, Mengru; Bai, Zhaohai; Ma, Lin

    2016-08-15

    Chinese agriculture has been developing fast towards industrial food production systems that discharge nutrient-rich wastewater into rivers. As a result, nutrient export by rivers has been increasing, resulting in coastal water pollution. We developed a Model to Assess River Inputs of Nutrients to seAs (MARINA) for China. The MARINA Nutrient Model quantifies river export of nutrients by source at the sub-basin scale as a function of human activities on land. MARINA is a downscaled version for China of the Global NEWS-2 (Nutrient Export from WaterSheds) model with an improved approach for nutrient losses from animal production and population. We use the model to quantify dissolved inorganic and organic nitrogen (N) and phosphorus (P) export by six large rivers draining into the Bohai Gulf (Yellow, Hai, Liao), Yellow Sea (Yangtze, Huai) and South China Sea (Pearl) in 1970, 2000 and 2050. We addressed uncertainties in the MARINA Nutrient model. Between 1970 and 2000 river export of dissolved N and P increased by a factor of 2-8 depending on sea and nutrient form. Thus, the risk for coastal eutrophication increased. Direct losses of manure to rivers contribute to 60-78% of nutrient inputs to the Bohai Gulf and 20-74% of nutrient inputs to the other seas in 2000. Sewage is an important source of dissolved inorganic P, and synthetic fertilizers of dissolved inorganic N. Over half of the nutrients exported by the Yangtze and Pearl rivers originated from human activities in downstream and middlestream sub-basins. The Yellow River exported up to 70% of dissolved inorganic N and P from downstream sub-basins and of dissolved organic N and P from middlestream sub-basins. Rivers draining into the Bohai Gulf are drier, and thus transport fewer nutrients. For the future we calculate further increases in river export of nutrients. The MARINA Nutrient model quantifies the main sources of coastal water pollution for sub-basins. This information can contribute to formulation of

  20. Large-Scale Features of Pliocene Climate: Results from the Pliocene Model Intercomparison Project

    Science.gov (United States)

    Haywood, A. M.; Hill, D.J.; Dolan, A. M.; Otto-Bliesner, B. L.; Bragg, F.; Chan, W.-L.; Chandler, M. A.; Contoux, C.; Dowsett, H. J.; Jost, A.; Kamae, Y.; Lohmann, G.; Lunt, D. J.; Abe-Ouchi, A.; Pickering, S. J.; Ramstein, G.; Rosenbloom, N. A.; Salzmann, U.; Sohl, L.; Stepanek, C.; Ueda, H.; Yan, Q.; Zhang, Z.

    2013-01-01

    Climate and environments of the mid-Pliocene warm period (3.264 to 3.025 Ma) have been extensively studied.Whilst numerical models have shed light on the nature of climate at the time, uncertainties in their predictions have not been systematically examined. The Pliocene Model Intercomparison Project quantifies uncertainties in model outputs through a coordinated multi-model and multi-mode data intercomparison. Whilst commonalities in model outputs for the Pliocene are clearly evident, we show substantial variation in the sensitivity of models to the implementation of Pliocene boundary conditions. Models appear able to reproduce many regional changes in temperature reconstructed from geological proxies. However, data model comparison highlights that models potentially underestimate polar amplification. To assert this conclusion with greater confidence, limitations in the time-averaged proxy data currently available must be addressed. Furthermore, sensitivity tests exploring the known unknowns in modelling Pliocene climate specifically relevant to the high latitudes are essential (e.g. palaeogeography, gateways, orbital forcing and trace gasses). Estimates of longer-term sensitivity to CO2 (also known as Earth System Sensitivity; ESS), support previous work suggesting that ESS is greater than Climate Sensitivity (CS), and suggest that the ratio of ESS to CS is between 1 and 2, with a "best" estimate of 1.5.

  1. The Evaluation Model About the Result of Enterprise Technological Innovation Based on DAGF Algorithm

    Institute of Scientific and Technical Information of China (English)

    LikeMao; ZigangZhang

    2004-01-01

    Based on DAGF Algorithm, an evaluation model about the result of enterprise's technological innovation is proposed. Furthermore, establishment of its system of evaluation indicators and DAGF Algorithm are discussed in detail. Besides, the result of the case shows that the model is fit for evaluation of the result of enterprise's technological innovation.

  2. Encouraging Sustainable Transport Choices in American Households: Results from an Empirically Grounded Agent-Based Model

    Directory of Open Access Journals (Sweden)

    Davide Natalini

    2013-12-01

    Full Text Available The transport sector needs to go through an extended process of decarbonisation to counter the threat of climate change. Unfortunately, the International Energy Agency forecasts an enormous growth in the number of cars and greenhouse gas emissions by 2050. Two issues can thus be identified: (1 the need for a new methodology that could evaluate the policy performances ex-ante and (2 the need for more effective policies. To help address these issues, we developed an Agent-Based Model called Mobility USA aimed at: (1 testing whether this could be an effective approach in analysing ex-ante policy implementation in the transport sector; and (2 evaluating the effects of alternative policy scenarios on commuting behaviours in the USA. Particularly, we tested the effects of two sets of policies, namely market-based and preference-change ones. The model results suggest that this type of agent-based approach will provide a useful tool for testing policy interventions and their effectiveness.

  3. Carbon sequestration via reaction with basaltic rocks: geochemical modeling and experimental results

    Science.gov (United States)

    Rosenbauer, Robert J.; Thomas, Burt; Bischoff, James L.; Palandri, James

    2012-01-01

    Basaltic rocks are potential repositories for sequestering carbon dioxide (CO2) because of their capacity for trapping CO2 in carbonate minerals. We carried out a series of thermodynamic equilibrium models and high pressure experiments, reacting basalt with CO2-charged fluids over a range of conditions from 50 to 200 °C at 300 bar. Results indicate basalt has a high reactivity to CO2 acidified brine. Carbon dioxide is taken up from solution at all temperatures from 50 to 200 °C, 300 bar, but the maximum extent and rate of reaction occurs at 100 °C, 300 bar. Reaction path simulations utilizing the geochemical modeling program CHILLER predicted an equilibrium carbonate alteration assemblage of calcite, magnesite, and siderite, but the only secondary carbonate identified in the experiments was a ferroan magnesite. The amount of uptake at 100 °C, 300 bar ranged from 8% by weight for a typical tholeite to 26% for a picrite. The actual amount of CO2 uptake and extent of rock alteration coincides directly with the magnesium content of the rock suggesting that overall reaction extent is controlled by bulk basalt Mg content. In terms of sequestering CO2, an average basaltic MgO content of 8% is equivalent to 2.6 × 108 metric ton CO2/km3 basalt.

  4. Natural abiotic formation of oxalic acid in soils: results from aromatic model compounds and soil samples.

    Science.gov (United States)

    Studenroth, Sabine; Huber, Stefan G; Kotte, Karsten; Schöler, Heinz F

    2013-02-05

    Oxalic acid is the smallest dicarboxylic acid and plays an important role in soil processes (e.g., mineral weathering and metal detoxification in plants). We have first proven its abiotic formation in soils and investigated natural abiotic degradation processes based on the oxidation of soil organic matter, enhanced by Fe(3+) and H(2)O(2) as hydroxyl radical suppliers. Experiments with the model compound catechol and further hydroxylated benzenes were performed to examine a common degradation pathway and to presume a general formation mechanism of oxalic acid. Two soil samples were tested for the release of oxalic acid and the potential effects of various soil parameters on oxalic acid formation. Additionally, the soil samples were treated with different soil sterilization methods to prove the oxalic acid formation under abiotic soil conditions. Different series of model experiments were conducted to determine a range of factors including Fe(3+), H(2)O(2), reaction time, pH, and chloride concentration on oxalic acid formation. Under certain conditions, catechol is degraded up to 65.6% to oxalic acid referring to carbon. In serial experiments with two soil samples, oxalic acid was produced, and the obtained results are suggestive of an abiotic degradation process. In conclusion, Fenton-like conditions with low Fe(3+) concentrations and an excess of H(2)O(2) as well as acidic conditions were required for an optimal oxalic acid formation. The presence of chloride reduced oxalic acid formation.

  5. Segregation analysis of the testis-determining autosomal trait, Tda, that differs between the C57Bl/6J and DBA/2J mouse strains suggests a multigenic threshold model.

    Science.gov (United States)

    Eisner, J R; Eales, B A; Biddle, F G

    1996-04-01

    The testis-determining autosomal trait (Tda) of the mouse was uncovered when the Y chromosome of the poschiavinus variety of Mus musculus domesticus was introduced into the C57BL/6J laboratory strain background. Testis development is normal in the F1 generation but, in the backcross and subsequent crosses to C57BL/6J females, XY individuals with the poschiavinus Y chromosome expressed bilateral ovaries or various combinations of an ovotestis with a contralateral ovary or testis or bilateral ovotestes and few had testes bilaterally. In other strain backgrounds, such as DBA/2J, XY individuals with the poschiavinus Y chromosome always expressed normal testes bilaterally. The first breeding analysis of this difference in the interaction of strain background with the poschiavinus Y chromosome suggested that the Tda trait was due to a single gene, but attempts to map it failed. We constructed two strains of C57BL/6J and DBA/2J that are consomic for the poschiavinus Y chromosome in order to conduct a segregation analysis of the Tda trait. In the C57BL/6J.Y-POS consomic strain, liability to express incomplete testis development is normally distributed and thresholds in development specify the probability of different classes of ovary, ovotestis, and testis combinations. Testis development is complete in the DBA/2J.Y-POS consomic strain. We demonstrated previously that the Tda trait of C57BL/6J is recessive to that of DBA/2J and the segregating first backcross generation of embryos rejected the single-gene model. We have extended our analysis to a F2 generation of embryos that also rejects a single-gene model. We also report a test mating analysis of the first backcross generation. It was initiated to provide an independent assessment of the single-gene model, but the analysis of the distribution of test mating results suggests that the difference in the Tda trait between C57BL/6J and DBA/2J may be due to a small number of loci, possibly four or five, and that the

  6. Evaluation model for the implementation results of mine law based on neural network

    Science.gov (United States)

    Gu, Tao; Li, Xu

    2010-04-01

    To evaluate the implementation results of mine safety production law, the evaluation model based on neural network is presented. In this model, 63 indicators which can describe the mine law effectively are proposed. The evaluation system is developed by using the model and the 63 indicators. The evaluation results show that the proposed method has high accuracy. We can effectively estimate the score of one mine for its carrying out the safety law. The estimate results are of scientific credibility and impartiality.

  7. Modeling chemistry in and above snow at Summit, Greenland – Part 1: Model description and results

    Directory of Open Access Journals (Sweden)

    J. L. Thomas

    2010-12-01

    Full Text Available Sun-lit snow is increasingly recognized as a chemical reactor that plays an active role in uptake, transformation, and release of atmospheric trace gases. Snow is known to influence boundary layer air on a local scale, and given the large global surface coverage of snow may also be significant on regional and global scales.

    We present a new detailed one-dimensional snow chemistry module that has been coupled to the 1-D atmospheric boundary layer model MISTRA, we refer to the coupled model as MISTRA-SNOW. The new 1-D snow module, which is dynamically coupled to the overlaying atmospheric model, includes heat transport in the snowpack, molecular diffusion, and wind pumping of gases in the interstitial air. The model includes gas phase photochemistry and chemical reactions both in the interstitial air and the atmosphere. Heterogeneous and multiphase chemistry on atmospheric aerosol is considered explicitly. The chemical interaction of interstitial air with snow grains is simulated assuming chemistry in a liquid (aqueous layer on the grain surface. The model was used to investigate snow as the source of nitrogen oxides (NOx and gas phase reactive bromine in the atmospheric boundary layer in the remote snow covered Arctic (over the Greenland ice sheet as well as to investigate the link between halogen cycling and ozone depletion that has been observed in interstitial air. The model is validated using data taken 10 June–13 June, 2008 as part of the Greenland Summit Halogen-HOx experiment (GSHOX. The model predicts that reactions involving bromide and nitrate impurities in the surface snow at Summit can sustain atmospheric NO and BrO mixing ratios measured at Summit during this period.

  8. The BirthPlace collaborative practice model: results from the San Diego Birth Center Study.

    Science.gov (United States)

    Swartz; Jackson; Lang; Ecker; Ganiats; Dickinson; Nguyen

    1998-07-01

    compared along with cost-effectiveness and acceptance of the model by patients. Data collection occurred primarily through medical record abstraction with the addition of two patient questionnaires. Comparability of the cohorts was established by using a validated methodology to determine medical/perinatal risk and birth center eligibility, which included assessment by two CNMs and an independent blind review by a perinatologist. The cost analysis uses a resource-utilization approach and new methodologies such as activity-based-costing to compare costs from both the perspective of the payor and the health care provider. Patient satisfaction was measured using a self-administered patient questionnaire.Results: Current preliminary results from approximately 38% of the final expected study sample are available. Crude and adjusted analysis have been conducted. Overall, the preliminary results suggest similar morbidity and mortality in the two groups. Fetal deaths are 0.75% in the index and 0.64% in the comparison group, with early neonatal deaths at 0.26% and 0.23%, respectively. The traditional care group showed adjusted rate differences of 5.83% more major maternal intrapartum complications and 9% more NICU admissions. While the birth center group showed adjusted rate differences of 5.5% more low birth weight and 0.95% more preterm birth. For other outcomes, the birth center group showed an adjusted rate difference of 22.34% more exclusive breastfeeding at discharge. Also, there was less utilization of cesarean section and assisted delivery in the birth center group as compared to the traditional care group. The adjusted rate difference for normal spontaneous vaginal deliveries in nulliparas was 10.23% more in the birth center group, with similar results in multiparas with and without history of cesarean (28.88% and 7.84%, respectively). Preliminary results also show that the average total cost for pregnancy-related services paid by California Medicaid was $4,550 for the

  9. A Neighborhood-Scale Green Infrastructure Retrofit: Experimental Results, Model Simulations, and Resident Perspectives

    Science.gov (United States)

    Jefferson, A.; Avellaneda, P. M.; Jarden, K. M.; Turner, V. K.; Grieser, J.

    2016-12-01

    Distributed green infrastructure approaches to stormwater management that can be retrofit into existing development are of growing interest, but questions remain about their effectiveness at the watershed-scale. In suburban northeastern Ohio, homeowners on a residential street with 55% impervious surface were given the opportunity for free rain barrels, rain gardens, and bioretention cells. Of 163 parcels, only 22 owners (13.5%) chose to participate, despite intense outreach efforts. After pre-treatment monitoring, 37 rain barrels, 7 rain gardens, and 16 street-side bioretention cells were installed in 2013-2014. Using a paired watershed approach, a reduction in up to 33% of peak flow and 40% of total runoff volume per storm was measured in the storm sewer. Using the monitoring data, a calibrated and validated SWMM model was built to explore the long-term effectiveness of the green infrastructure against a wider range of hydrological conditions. Model results confirm the effectiveness of green infrastructure in reducing surface runoff and increasing infiltration and evaporation. Based on 20 years of historical precipitation data, the model shows that the green infrastructure is capable of reducing flows by >40% at the 1, 2, and 5 year return period, suggesting some resilience to projected increases in precipitation intensity in a changing climate. Further, in this project, more benefit is derived from the street-side bioretention cells than from the rain barrels and gardens that treat rooftop runoff. Substantial hydrological gains were achieved despite low homeowner participation. Surveys indicate that many residents viewed stormwater as the city's problem and had negative perceptions of green infrastructure, despite slightly pro-environment values generally. Overall, this study demonstrates green infrastructure's hydrological effectiveness but raises challenging questions about overcoming social barriers retrofits at the neighborhood scale.

  10. The Economic Consequences of a Large EMU Results of Macroeconomic Model Simulations

    Directory of Open Access Journals (Sweden)

    Fritz Breuss

    1997-05-01

    Full Text Available Recent economic forecasts increase the probability that firstly, the EMU can start as planned on January 1, 1999 and secondly, that it will start with a large group of countries. The economic implications of the artificially unification of "hard-currency" and "soft-currency" countries are analysed by means of macroeconomic model simulations. The results of a large "non-optimal" EMU are as expected. On the one hand, there are positive income effects for all countries although unevenly distributed over the participants on the other hand, the internal (inflation and external (value of the Euro vis-à-vis the Dollar stability are at risk. The "hard-currency" group will be the major winner (in terms of real GDP and employment, whereas the "soft-currency" group has to carry the adjustment costs to a regime of fixed exchange rates (Euro which results in slower growth, decline in employment and a deterioration of their budgetary position. The necessary convergence of prices and interest rates leads to an increase (decrease of inflation and interest rates in the "hard-currency" countries ("soft-currency" countries. If the EMU will start with a large group there will be a tendency to devalue the Euro against the Dollar. As a consequence of the uneven economic performance of a large (non-optimal EMU I would suggest to start the EMU with a core group of "hard-currency" countries. After this mini EMU succeeded the other Member States could join the EMU.

  11. Potential impact of EU Common Agriculture Policy on Croatian dairy sector - modelling results

    Directory of Open Access Journals (Sweden)

    Magdalena Zrakić

    2015-07-01

    Full Text Available Milk in terms of production value has the second biggest share in Croatian agricultural sector in 2013 (CBS, 2014. It could be speculated that after the abolition of quotas in the European Union, the declining trend in domestic production will continue and that exposure to free European market will significantly affect the competitiveness of domestic production. The aim of this paper is to analyse the prospects of Croatian dairy industry (sector under certain conditions of the EU Common Agricultural Policy (CAP and to present projections simulated with the help of partial equilibrium model AGMEMOD. The main model inputs are policy and macroeconomic variables, supply-use balances of agro-food products and producer prices. The Baseline projections has shown that in 2025 in line with the CAP implementation there might be a decrease of dairy cows number by 33 %, the raw milk price by 14 % and the collected cow’s milk amount by 13 % compared to the five-year average of 2008-2012. The positive effect was noted in productivity, according to the simulation, with an increase by 25 %, which consequently may lead to increased deliveries to dairies for about 17 %. Therefore preliminary results show that accounting for milk processing the dairy sector in Croatia might obtain a favourable situation by 2025. Taking into account the EU market situation, there is an opportunity to increase milk processing given the current level of prices in the EU market and global markets, and taking into account the abolition of milk quotas. Also, the results suggest, according to the experience of other states, that the utilization of funds of 1st and 2nd pillar of the CAP (utilization measures across projects in order to improve the production structure and efficiency will play an important role.

  12. THE CORRELATION OF EXPERIMENTAL RESULTS OF THE COMPOSITE MATERIALS HARDNESS WITH THEORETICAL RESULTS OF A MATHEMATICAL MODEL

    Directory of Open Access Journals (Sweden)

    Minodora Maria PASARE

    2014-05-01

    Full Text Available In this paper is about of the Hays-Kendall theoretical model of testing the microhardness of the composites materials of NiP/SiC type. We used an indenter to establish the microhardness of the composite and different types of loads. The microhardness can be interpreted using a theoretical model Hays-Kendall and the Kick model.

  13. Photovoltaic Grid-Connected Modeling and Characterization Based on Experimental Results

    Science.gov (United States)

    Humada, Ali M.; Hojabri, Mojgan; Sulaiman, Mohd Herwan Bin; Hamada, Hussein M.; Ahmed, Mushtaq N.

    2016-01-01

    A grid-connected photovoltaic (PV) system operates under fluctuated weather condition has been modeled and characterized based on specific test bed. A mathematical model of a small-scale PV system has been developed mainly for residential usage, and the potential results have been simulated. The proposed PV model based on three PV parameters, which are the photocurrent, IL, the reverse diode saturation current, Io, the ideality factor of diode, n. Accuracy of the proposed model and its parameters evaluated based on different benchmarks. The results showed that the proposed model fitting the experimental results with high accuracy compare to the other models, as well as the I-V characteristic curve. The results of this study can be considered valuable in terms of the installation of a grid-connected PV system in fluctuated climatic conditions. PMID:27035575

  14. Large-scale features of Pliocene climate: results from the Pliocene Model Intercomparison Project

    Directory of Open Access Journals (Sweden)

    A. M. Haywood

    2012-07-01

    Full Text Available Climate and environments of the mid-Pliocene Warm Period (3.264 to 3.025 Ma have been extensively studied. Whilst numerical models have shed light on the nature of climate at the time, uncertainties in their predictions have not been systematically examined. The Pliocene Model Intercomparison Project quantifies uncertainties in model outputs through a co-ordinated multi-model and multi-model/data intercomparison. Whilst commonalities in model outputs for the Pliocene are evident, we show substantial variation in the sensitivity of models to the implementation of Pliocene boundary conditions. Models appear able to reproduce many regional changes in temperature reconstructed from geological proxies. However, data/model comparison highlights the potential for models to underestimate polar amplification. To assert this conclusion with greater confidence, limitations in the time-averaged proxy data currently available must be addressed. Sensitivity tests exploring the "known unknowns" in modelling Pliocene climate specifically relevant to the high-latitudes are also essential (e.g. palaeogeography, gateways, orbital forcing and trace gasses. Estimates of longer-term sensitivity to CO2 (also known as Earth System Sensitivity; ESS, suggest that ESS is greater than Climate Sensitivity (CS, and that the ratio of ESS to CS is between 1 and 2, with a best estimate of 1.5.

  15. Extension of Some Classical Results on Ruin Probability to Delayed Renewal Model

    Institute of Scientific and Technical Information of China (English)

    Chun Su; Tao Jiang; Qi-he Tang

    2002-01-01

    Embrechts and Veraverbeke[2] investigated the renewal risk model and gave a tail equivalence relationship of the ruin probabilities ψ(x) under the assumption that the claim size is heavy-tailed, which is regarded as a classical result in the context of extremal value theory. In this note we extend this result to the delayed renewal risk model.

  16. Conceptual Incoherence as a Result of the use of Multiple Historical Models in School Textbooks

    Science.gov (United States)

    Gericke, Niklas M.; Hagberg, Mariana

    2010-08-01

    This paper explores the occurrence of conceptual incoherence in upper secondary school textbooks resulting from the use of multiple historical models. Swedish biology and chemistry textbooks, as well as a selection of books from English speaking countries, were examined. The purpose of the study was to identify which models are used to represent the phenomenon of gene function in textbooks and to investigate how these models relate to historical scientific models and subject matter contexts. Models constructed for specific use in textbooks were identified using concept mapping. The data were further analyzed by content analysis. The study shows that several different historical models are used in parallel in textbooks to describe gene function. Certain historical models were used more often then others and the most recent scientific views were rarely referred to in the textbooks. Hybrid models were used frequently, i.e. most of the models in the textbooks consisted of a number of components of several historical models. Since the various historical models were developed as part of different scientific frameworks, hybrid models exhibit conceptual incoherence, which may be a source of confusion for students. Furthermore, the use of different historical models was linked to particular subject contexts in the textbooks studied. The results from Swedish and international textbooks were similar, indicating the general applicability of our conclusions.

  17. COMPUTATIONAL FLUID DYNAMICS MODELING OF SCALED HANFORD DOUBLE SHELL TANK MIXING - CFD MODELING SENSITIVITY STUDY RESULTS

    Energy Technology Data Exchange (ETDEWEB)

    JACKSON VL

    2011-08-31

    The primary purpose of the tank mixing and sampling demonstration program is to mitigate the technical risks associated with the ability of the Hanford tank farm delivery and celtification systems to measure and deliver a uniformly mixed high-level waste (HLW) feed to the Waste Treatment and Immobilization Plant (WTP) Uniform feed to the WTP is a requirement of 24590-WTP-ICD-MG-01-019, ICD-19 - Interface Control Document for Waste Feed, although the exact definition of uniform is evolving in this context. Computational Fluid Dynamics (CFD) modeling has been used to assist in evaluating scaleup issues, study operational parameters, and predict mixing performance at full-scale.

  18. Seeking for the rational basis of the Median Model: the optimal combination of multi-model ensemble results

    Directory of Open Access Journals (Sweden)

    A. Riccio

    2007-12-01

    Full Text Available In this paper we present an approach for the statistical analysis of multi-model ensemble results. The models considered here are operational long-range transport and dispersion models, also used for the real-time simulation of pollutant dispersion or the accidental release of radioactive nuclides.

    We first introduce the theoretical basis (with its roots sinking into the Bayes theorem and then apply this approach to the analysis of model results obtained during the ETEX-1 exercise. We recover some interesting results, supporting the heuristic approach called "median model", originally introduced in Galmarini et al. (2004a, b.

    This approach also provides a way to systematically reduce (and quantify model uncertainties, thus supporting the decision-making process and/or regulatory-purpose activities in a very effective manner.

  19. Seeking for the rational basis of the median model: the optimal combination of multi-model ensemble results

    Directory of Open Access Journals (Sweden)

    A. Riccio

    2007-04-01

    Full Text Available In this paper we present an approach for the statistical analysis of multi-model ensemble results. The models considered here are operational long-range transport and dispersion models, also used for the real-time simulation of pollutant dispersion or the accidental release of radioactive nuclides.

    We first introduce the theoretical basis (with its roots sinking into the Bayes theorem and then apply this approach to the analysis of model results obtained during the ETEX-1 exercise. We recover some interesting results, supporting the heuristic approach called "median model", originally introduced in Galmarini et al. (2004a, b.

    This approach also provides a way to systematically reduce (and quantify model uncertainties, thus supporting the decision-making process and/or regulatory-purpose activities in a very effective manner.

  20. Preliminary Results of the first European Source Apportionment intercomparison for Receptor and Chemical Transport Models

    Science.gov (United States)

    Belis, Claudio A.; Pernigotti, Denise; Pirovano, Guido

    2017-04-01

    Source Apportionment (SA) is the identification of ambient air pollution sources and the quantification of their contribution to pollution levels. This task can be accomplished using different approaches: chemical transport models and receptor models. Receptor models are derived from measurements and therefore are considered as a reference for primary sources urban background levels. Chemical transport model have better estimation of the secondary pollutants (inorganic) and are capable to provide gridded results with high time resolution. Assessing the performance of SA model results is essential to guarantee reliable information on source contributions to be used for the reporting to the Commission and in the development of pollution abatement strategies. This is the first intercomparison ever designed to test both receptor oriented models (or receptor models) and chemical transport models (or source oriented models) using a comprehensive method based on model quality indicators and pre-established criteria. The target pollutant of this exercise, organised in the frame of FAIRMODE WG 3, is PM10. Both receptor models and chemical transport models present good performances when evaluated against their respective references. Both types of models demonstrate quite satisfactory capabilities to estimate the yearly source contributions while the estimation of the source contributions at the daily level (time series) is more critical. Chemical transport models showed a tendency to underestimate the contribution of some single sources when compared to receptor models. For receptor models the most critical source category is industry. This is probably due to the variety of single sources with different characteristics that belong to this category. Dust is the most problematic source for Chemical Transport Models, likely due to the poor information about this kind of source in the emission inventories, particularly concerning road dust re-suspension, and consequently the

  1. Numerical modelling of radon-222 entry into houses: An outline of techniques and results

    DEFF Research Database (Denmark)

    Andersen, C.E.

    2001-01-01

    Numerical modelling is a powerful tool for studies of soil gas and radon-222 entry into houses. It is the purpose of this paper to review some main techniques and results. In the past, modelling has focused on Darcy flow of soil gas (driven by indoor–outdoor pressure differences) and combined...... diffusive and advective transport of radon. Models of different complexity have been used. The simpler ones are finite-difference models with one or two spatial dimensions. The more complex models allow for full three-dimensional and time dependency. Advanced features include: soil heterogeneity, anisotropy......, fractures, moisture, non-uniform soil temperature, non-Darcy flow of gas, and flow caused by changes in the atmospheric pressure. Numerical models can be used to estimate the importance of specific factors for radon entry. Models are also helpful when results obtained in special laboratory or test structure...

  2. Parallel Path Magnet Motor: Development of the Theoretical Model and Analysis of Experimental Results

    Science.gov (United States)

    Dirba, I.; Kleperis, J.

    2011-01-01

    Analytical and numerical modelling is performed for the linear actuator of a parallel path magnet motor. In the model based on finite-element analysis, the 3D problem is reduced to a 2D problem, which is sufficiently precise in a design aspect and allows modelling the principle of a parallel path motor. The paper also describes a relevant numerical model and gives comparison with experimental results. The numerical model includes all geometrical and physical characteristics of the motor components. The magnetic flux density and magnetic force are simulated using FEMM 4.2 software. An experimental model has also been developed and verified for the core of switchable magnetic flux linear actuator and motor. The results of experiments are compared with those of theoretical/analytical and numerical modelling.

  3. Comparison of fully coupled hydroelastic computation and segmented model test results for slamming and whipping loads

    Directory of Open Access Journals (Sweden)

    Jung-Hyun Kim

    2014-12-01

    Full Text Available This paper presents a numerical analysis of slamming and whipping using a fully coupled hydroelastic model. The coupled model uses a 3-D Rankine panel method, a 1-D or 3-D finite element method, and a 2-D Generalized Wagner Model (GWM, which are strongly coupled in time domain. First, the GWM is validated against results of a free drop test of wedges. Second, the fully coupled method is validated against model test results for a 10,000 twenty-foot equivalent unit (TEU containership. Slamming pressures and whipping responses to regular waves are compared. A spatial distribution of local slamming forces is measured using 14 force sensors in the model test, and it is compared with the integration of the pressure distribution by the computation. Furthermore, the pressure is decomposed into the added mass, impact, and hydrostatic components, in the computational results. The validity and characteristics of the numerical model are discussed.

  4. Comparison between InfoWorks hydraulic results and a physical model of an urban drainage system.

    Science.gov (United States)

    Rubinato, Matteo; Shucksmith, James; Saul, Adrian J; Shepherd, Will

    2013-01-01

    Urban drainage systems are frequently analysed using hydraulic modelling software packages such as InfoWorks CS or MIKE-Urban. The use of such modelling tools allows the evaluation of sewer capacity and the likelihood and impact of pluvial flood events. Models can also be used to plan major investments such as increasing storage capacity or the implementation of sustainable urban drainage systems. In spite of their widespread use, when applied to flooding the results of hydraulic models are rarely compared with field or laboratory (i.e. physical modelling) data. This is largely due to the time and expense required to collect reliable empirical data sets. This paper describes a laboratory facility which will enable an urban flood model to be verified and generic approaches to be built. Results are presented from the first phase of testing, which compares the sub-surface hydraulic performance of a physical scale model of a sewer network in Yorkshire, UK, with downscaled results from a calibrated 1D InfoWorks hydraulic model of the site. A variety of real rainfall events measured in the catchment over a period of 15 months (April 2008-June 2009) have been both hydraulically modelled and reproduced in the physical model. In most cases a comparison of flow hydrographs generated in both hydraulic and physical models shows good agreement in terms of velocities which pass through the system.

  5. Empirical Evaluation of the Proposed eXSCRUM Model-Results of a Case Study

    Directory of Open Access Journals (Sweden)

    M Rizwan Jameel Qureshi

    2011-05-01

    Full Text Available Agile models promote fast development. XP and Scrum are the most widely used agile models. This paper investigates the phases of XP and Scrum models in order to identify their potentials and drawbacks. XP model has certain drawbacks, such as not suitable for maintenance projects and poor performance for medium and large-scale development projects. Scrum model has certain limitations, such as lacked in engineering practices. Since, both XP and Scrum models contain good features and strengths but still there are improvement possibilities in these models. Majority of the software development companies are reluctant to switch from traditional methodologies to agile methodologies for development of industrial projects. A fine integration, of software management of the Scrum model and engineering practices of XP model, is very much required to accumulate the strengths and remove the limitations of both models. This is achieved by proposing an eXScrum model. The proposed model is validated by conducting a controlled case study. The results of case study show that the proposed integrated eXScrum model enriches the potentials of both XP and Scrum models and eliminates their drawbacks.

  6. Updating Finite Element Model of a Wind Turbine Blade Section Using Experimental Modal Analysis Results

    DEFF Research Database (Denmark)

    Luczak, Marcin; Manzato, Simone; Peeters, Bart;

    2014-01-01

    of model parameters was selected for the model updating process. Design of experiment and response surface method was implemented to find values of model parameters yielding results closest to the experimental. The updated finite element model is producing results more consistent with the measurement...... is to validate finite element model of the modified wind turbine blade section mounted in the flexible support structure accordingly to the experimental results. Bend-twist coupling was implemented by adding angled unidirectional layers on the suction and pressure side of the blade. Dynamic test and simulations...... were performed on a section of a full scale wind turbine blade provided by Vestas Wind Systems A/S. The numerical results are compared to the experimental measurements and the discrepancies are assessed by natural frequency difference and modal assurance criterion. Based on sensitivity analysis, set...

  7. Reinventing suggestion systems for continuous improvement

    NARCIS (Netherlands)

    Schuring, R.W.; Luijten, Harald

    2001-01-01

    This article reports an experiment to increase the effectiveness of a suggestion system by deliberately applying principles of the kaizen and performance management. Design rules for suggestion systems are derived from these theories. The suggestion system that resulted differs from traditional

  8. Reinventing suggestion systems for continuous improvement

    NARCIS (Netherlands)

    Schuring, Roel W.; Luijten, Harald

    2001-01-01

    This article reports an experiment to increase the effectiveness of a suggestion system by deliberately applying principles of the kaizen and performance management. Design rules for suggestion systems are derived from these theories. The suggestion system that resulted differs from traditional sugg

  9. Diverse magmatic effects of subducting a hot slab in SW Japan: Results from forward modeling

    Science.gov (United States)

    Kimura, Jun-Ichi; Gill, James B.; Kunikiyo, Tomoyuki; Osaka, Isaku; Shimoshioiri, Yusuke; Katakuse, Maiko; Kakubuchi, Susumu; Nagao, Takashi; Furuyama, Katsuhiko; Kamei, Atsushi; Kawabata, Hiroshi; Nakajima, Junichi; van Keken, Peter E.; Stern, Robert J.

    2014-03-01

    response to the subduction of the young Shikoku Basin of the Philippine Sea Plate, arc magmas erupted in SW Japan throughout the late Cenozoic. Many magma types are present including ocean island basalt (OIB), shoshonite (SHO), arc-type alkali basalt (AB), typical subalkalic arc basalt (SAB), high-Mg andesite (HMA), and adakite (ADK). OIB erupted since the Japan Sea back-arc basin opened, whereas subsequent arc magmas accompanied subduction of the Shikoku Basin. However, there the origin of the magmas in relation to hot subduction is debated. Using new major and trace element and Sr-Nd-Pb-Hf isotope analyses of 324 lava samples from seven Quaternary volcanoes, we investigated the genetic conditions of the magma suites using a geochemical mass balance model, Arc Basalt Simulator version 4 (ABS4), that uses these data to solve for the parameters such as pressure/temperature of slab dehydration/melting and slab flux fraction, pressure, and temperature of mantle melting. The calculations suggest that those magmas originated from slab melts that induced flux melting of mantle peridotite. The suites differ mostly in the mass fraction of slab-melt flux, increasing from SHO through AB, SAB, HMA, to ADK. The pressure and temperature of mantle melting decreases in the same order. The suites differ secondarily in the ratio of altered oceanic crust to sediment in the source of the slab melt. The atypical suites associated with hot subduction result from unusually large mass fractions of slab melt and unusually cool mantle temperatures.

  10. Results of the Regional Earthquake Likelihood Models (RELM) test of earthquake forecasts in California.

    Science.gov (United States)

    Lee, Ya-Ting; Turcotte, Donald L; Holliday, James R; Sachs, Michael K; Rundle, John B; Chen, Chien-Chih; Tiampo, Kristy F

    2011-10-04

    The Regional Earthquake Likelihood Models (RELM) test of earthquake forecasts in California was the first competitive evaluation of forecasts of future earthquake occurrence. Participants submitted expected probabilities of occurrence of M ≥ 4.95 earthquakes in 0.1° × 0.1° cells for the period 1 January 1, 2006, to December 31, 2010. Probabilities were submitted for 7,682 cells in California and adjacent regions. During this period, 31 M ≥ 4.95 earthquakes occurred in the test region. These earthquakes occurred in 22 test cells. This seismic activity was dominated by earthquakes associated with the M = 7.2, April 4, 2010, El Mayor-Cucapah earthquake in northern Mexico. This earthquake occurred in the test region, and 16 of the other 30 earthquakes in the test region could be associated with it. Nine complete forecasts were submitted by six participants. In this paper, we present the forecasts in a way that allows the reader to evaluate which forecast is the most "successful" in terms of the locations of future earthquakes. We conclude that the RELM test was a success and suggest ways in which the results can be used to improve future forecasts.

  11. Fate and Transport of Graphene Oxide in Granular Porous Media: Experimental Results and Modeling

    Science.gov (United States)

    Gao, Bin

    2014-05-01

    Although graphene oxide (GO) has been used in many applications to improve human life quality, its environmental fate and behavior are still largely unknown. In this work, a range of laboratory experiments were conducted to explore the aggregation, deposition, and transport mechanisms of GO nano-sheets in porous media under various conditions. Stability experimental data showed that both cation valence and pH showed significant effect on the aggregation of GO sheets. The measured critical coagulation concentrations were in good agreement with the predictions of the extended Schulze-Hardy rule. Sand column experimental results indicated that deposition and transport of GO in porous media were strongly dependent on solution ionic strength. Particularly, GO showed high mobility under low ionic strength conditions in both saturated and unsaturated columns. Increasing ionic strength dramatically increased the retention of GO in porous media, mainly through secondary-minimum deposition. Recovery rates of GO in unsaturated sand columns were lower than that in saturated columns under the same ionic strength conditions, suggesting moisture content also played an important role in the retention of GO in porous media. Findings from the bubble column experiments showed that the GO did not attach to the air-water interface, which is consistent with the XDLVO predictions. Additional retention mechanisms, such as film straining, thus could be responsible to the reduced mobility of GO in unsaturated porous media. The breakthrough curves of GO in saturated and unsaturated columns could be accurately simulated by an advection-dispersion-reaction model.

  12. A new procedure to built a model covariance matrix: first results

    Science.gov (United States)

    Barzaghi, R.; Marotta, A. M.; Splendore, R.; Borghi, A.

    2012-04-01

    In order to validate the results of geophysical models a common procedure is to compare model predictions with observations by means of statistical tests. A limit of this approach is the lack of a covariance matrix associated to model results, that may frustrate the achievement of a confident statistical significance of the results. Trying to overcome this limit, we have implemented a new procedure to build a model covariance matrix that could allow a more reliable statistical analysis. This procedure has been developed in the frame of the thermo-mechanical model described in Splendore et al. (2010), that predicts the present-day crustal velocity field in the Tyrrhenian due to Africa-Eurasia convergence and to lateral rheological heterogeneities of the lithosphere. Modelled tectonic velocity field has been compared to the available surface velocity field based on GPS observation, determining the best fit model and the degree of fitting, through the use of a χ2 test. Once we have identified the key models parameters and defined their appropriate ranges of variability, we have run 100 different models for 100 sets of randomly values of the parameters extracted within the corresponding interval, obtaining a stack of 100 velocity fields. Then, we calculated variance and empirical covariance for the stack of results, taking into account also cross-correlation, obtaining a positive defined, diagonal matrix that represents the covariance matrix of the model. This empirical approach allows us to define a more robust statistical analysis with respect the classic approach. Reference Splendore, Marotta, Barzaghi, Borghi and Cannizzaro, 2010. Block model versus thermomechanical model: new insights on the present-day regional deformation in the surroundings of the Calabrian Arc. In: Spalla, Marotta and Gosso (Eds) Advances in Interpretation of Geological Processes: Refinement of Multi scale Data and Integration in Numerical Modelling. Geological Society, London, Special

  13. Evaluating Direct Radiative Effects of Absorbing Aerosols on Atmospheric Dynamics with Aquaplanet and Regional Model Results

    Science.gov (United States)

    Can, Ö.; Tegen, I.; Quaas, J.

    2015-12-01

    Effects of absorbing aerosol on atmospheric dynamics are usually investigated with help of general circulation models or also regional models that represent the atmospheric system as realistic as possible. Reducing the complexity of models used to study the effects of absorbing aerosol on atmospheric dynamics helps to understand underlying mechanisms. In this study, by using ECHAM6 General Circulation Model (GCM) in an Aquaplanet setting and using simplified aerosol climatology, an initial idealization step has been taken. The analysis only considers direct radiative effects, furthering the reduction of complex model results. The simulations include cases including aerosol radiative forcing, no aerosol forcing, coarse mode aerosol forcing only (as approximation for mineral dust forcing) and forcing with increased aerosol absorption. The results showed that increased absorption affects cloud cover mainly in subtropics. Hadley circulation is found to be weakened in the increased absorption case. To compare the results of the idealized model with a more realistic model setting, the results of the regional model COSMO-MUSCAT that includes interactive mineral dust aerosol and considers the effects of dust radiative forcing are also analyzed. The regional model computes the atmospheric circulation for the year 2007 twice, including the feedback of dust and excluding the dust aerosol forcing. It is investigated to which extent the atmospheric response to the dust forcing agrees with the simplified Aquaplanet results. As expected, in the regional model mineral dust causes an increase in the temperature right above the dust layer while reducing the temperature close to the surface. In both models the presence of aerosol forcing leads to increased specific humidity, close to ITCZ. Notwithstanding the difference magnitudes, comparisons of the global aquaplanet and the regional model showed similar patterns. Further detailed comparisons will be presented.

  14. Glyoxal as a tracer of VOC oxidation chemistry: Comparison of measurements with model results for Blodgett Forest, California

    Science.gov (United States)

    Huisman, Andrew; Carlton, Annmarie; Keutsch, Frank

    2010-05-01

    We present a study investigating Volatile Organic Compound (VOC) oxidation chemistry in the context of regional ozone (O3) production during the BEARPEX 2007 and 2009 campaigns at Blodgett Forest Research Station (BFRS) in the Sierra Nevada mountains, CA. Measurements are compared with results from a regional model (US EPA CMAQ) and a zero dimensional (0-D) box model based on the Master Chemical Mechanism (MCM). We use glyoxal (CHOCHO) and formaldehyde (HCHO) as tracers for generalized oxidation processes and employ ratios of compounds (e.g. CHOCHO / HCHO, CHOCHO / MPAN) to study plume evolution as doing so attenuates the influence of meteorology. One of the goals of this study is to investigate the utility of glyoxal as a tracer of VOC oxidation chemistry for measurement/model comparisons, for which formaldehyde has served in the past. In this context, we investigate the discrepancies between models and measurements, and the degree to which these can be attributed to the representation of glyoxal chemistry (e.g. yields) or whether these discrepancies reflect VOC-HOx-NOx oxidation more generally, which has implications for ozone and secondary organic aerosol formation. Model results from CMAQ and the 0-D box model substantially overestimate the absolute measured concentration of CHOCHO at BFRS, and the CMAQ model also shows poor agreement with the diurnal profile. The 0-D box model also overestimates CHOCHO in data taken at the Caltech Indoor Air Chambers, suggesting that 2nd- and/or higher-generation yields of CHOCHO from isoprene are substantially overestimated in the MCM. 0-D model results that use attenuated 2nd- and higher-generation production of CHOCHO from isoprene show enhanced agreement with chamber results. We will present model results of the 0-D Box Model from BFRS employing these reduced yields that show improved agreement with measurements and also compare these results with the other models. We also present results obtained with two modifications of

  15. Suggestibility and negative priming: two replication studies.

    Science.gov (United States)

    David, Daniel; Brown, Richard J

    2002-07-01

    Research suggests that inhibiting the effect of irrelevant stimuli on subsequent thought and action (cognitive inhibition) may be an important component of suggestibility. Two small correlation studies were conducted to address the relationship between different aspects of suggestibility and individual differences in cognitive inhibition, operationalized as the degree of negative priming generated by to-be-ignored stimuli in a semantic categorization task. The first study found significant positive correlations between negative priming, hypnotic suggestibility, and creative imagination; a significant negative correlation was obtained between negative priming and interrogative suggestibility, demonstrating the discriminant validity of the study results. The second study replicated the correlation between negative priming and hypnotic suggestibility, using a different suggestibility measurement procedure that assessed subjective experience and hypnotic involuntariness as well as objective responses to suggestions. These studies support the notion that the ability to engage in cognitive inhibition may be an important component of hypnotic responsivity and maybe of other forms of suggestibility.

  16. Models of convection-driven tectonic plates - A comparison of methods and results

    Science.gov (United States)

    King, Scott D.; Gable, Carl W.; Weinstein, Stuart A.

    1992-01-01

    Recent numerical studies of convection in the earth's mantle have included various features of plate tectonics. This paper describes three methods of modeling plates: through material properties, through force balance, and through a thin power-law sheet approximation. The results obtained are compared using each method on a series of simple calculations. From these results, scaling relations between the different parameterizations are developed. While each method produces different degrees of deformation within the surface plate, the surface heat flux and average plate velocity agree to within a few percent. The main results are not dependent upon the plate modeling method and herefore are representative of the physical system modeled.

  17. [Suggestion and hypnosis in hysteria].

    Science.gov (United States)

    Berner, P

    1995-12-15

    Suggestive influences allow to resolve ambiguities. Normally they are only accepted if they correspond with the knowledge and believes of the subject. Under hypnosis or under the impact of serious psychic perturbations one may take up reality constructions which are not in conformity with these criteria. The restriction of consciousness and the ignoring of certain functions permitting this are the common basis of hypnosis and hysteria. But suggestions do not cause the later; they may only shape the symptomatology. Hypnosis can create a terrain facilitating the resolution of the problems underlying hysteria but it does not represent the treatment of hysteria.

  18. Dermal uptake of phthalates from clothing: comparison of model to human participant results

    DEFF Research Database (Denmark)

    Morrison, Glenn; Weschler, Charles J.; Bekö, Gabriel

    2016-01-01

    In this research, we extend a model of transdermal uptake of phthalates to include a layer of clothing. When compared with experimental results, this model better estimates dermal uptake of diethylphthalate (DEP) and di-n-butylphthalate (DnBP) than a previous model. It also demonstrates that upta...... the cotton-phthalate system will be challenging until data on partition coefficients are quantified for other combinations of SVOCs, fabric materials and environmental conditions....

  19. Planck intermediate results XXIX. All-sky dust modelling with Planck, IRAS, and WISE observations

    DEFF Research Database (Denmark)

    Ade, P. A. R.; Aghanim, N.; Alves, M. I. R.

    2016-01-01

    . The present work extends the DL dust modelling carried out on nearby galaxies using Herschel and Spitzer data to Galactic dust emission. We employ the DL dust model to generate maps of the dust mass surface density Sigma(Md), the dust optical extinction A(V), and the starlight intensity heating the bulk......We present all-sky modelling of the high resolution Planck, IRAS, andWISE infrared (IR) observations using the physical dust model presented by Draine & Li in 2007 (DL, ApJ, 657, 810). We study the performance and results of this model, and discuss implications for future dust modelling...... of the dust, parametrized by U-min. The DL model reproduces the observed spectral energy distribution (SED) satisfactorily over most of the sky, with small deviations in the inner Galactic disk and in low ecliptic latitude areas, presumably due to zodiacal light contamination. In the Andromeda galaxy (M31...

  20. Admission Laboratory Results to Enhance Prediction Models of Postdischarge Outcomes in Cardiac Care.

    Science.gov (United States)

    Pine, Michael; Fry, Donald E; Hannan, Edward L; Naessens, James M; Whitman, Kay; Reband, Agnes; Qian, Feng; Schindler, Joseph; Sonneborn, Mark; Roland, Jaclyn; Hyde, Linda; Dennison, Barbara A

    Predictive modeling for postdischarge outcomes of inpatient care has been suboptimal. This study evaluated whether admission numerical laboratory data added to administrative models from New York and Minnesota hospitals would enhance the prediction accuracy for 90-day postdischarge deaths without readmission (PD-90) and 90-day readmissions (RA-90) following inpatient care for cardiac patients. Risk-adjustment models for the prediction of PD-90 and RA-90 were designed for acute myocardial infarction, percutaneous cardiac intervention, coronary artery bypass grafting, and congestive heart failure. Models were derived from hospital claims data and were then enhanced with admission laboratory predictive results. Case-level discrimination, goodness of fit, and calibration were used to compare administrative models (ADM) and laboratory predictive models (LAB). LAB models for the prediction of PD-90 were modestly enhanced over ADM, but negligible benefit was seen for RA-90. A consistent predictor of PD-90 and RA-90 was prolonged length of stay outliers from the index hospitalization.

  1. GENERAL APROACH TO MODELING NONLINEAR AMPLITUDE AND FREQUENCY DEPENDENT HYSTERESIS EFFECTS BASED ON EXPERIMENTAL RESULTS

    Directory of Open Access Journals (Sweden)

    Christopher Heine

    2014-08-01

    Full Text Available A detailed description of the rubber parts’ properties is gaining in importance in the current simulation models of multi-body simulation. One application example is a multi-body simulation of the washing machine movement. Inside the washing machine, there are different force transmission elements, which consist completely or partly of rubber. Rubber parts or, generally, elastomers usually have amplitude-dependant and frequency-dependent force transmission properties. Rheological models are used to describe these properties. A method for characterization of the amplitude and frequency dependence of such a rheological model is presented within this paper. Within this method, the used rheological model can be reduced or expanded in order to illustrate various non-linear effects. An original result is given with the automated parameter identification. It is fully implemented in Matlab. Such identified rheological models are intended for subsequent implementation in a multi-body model. This allows a significant enhancement of the overall model quality.

  2. Results and Comparison from the SAM Linear Fresnel Technology Performance Model: Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Wagner, M. J.

    2012-04-01

    This paper presents the new Linear Fresnel technology performance model in NREL's System Advisor Model. The model predicts the financial and technical performance of direct-steam-generation Linear Fresnel power plants, and can be used to analyze a range of system configurations. This paper presents a brief discussion of the model formulation and motivation, and provides extensive discussion of the model performance and financial results. The Linear Fresnel technology is also compared to other concentrating solar power technologies in both qualitative and quantitative measures. The Linear Fresnel model - developed in conjunction with the Electric Power Research Institute - provides users with the ability to model a variety of solar field layouts, fossil backup configurations, thermal receiver designs, and steam generation conditions. This flexibility aims to encompass current market solutions for the DSG Linear Fresnel technology, which is seeing increasing exposure in fossil plant augmentation and stand-alone power generation applications.

  3. Effect of Estimated Daily Global Solar Radiation Data on the Results of Crop Growth Models

    Directory of Open Access Journals (Sweden)

    Herbert Formayer

    2007-10-01

    Full Text Available The results of previous studies have suggested that estimated daily globalradiation (RG values contain an error that could compromise the precision of subsequentcrop model applications. The following study presents a detailed site and spatial analysis ofthe RG error propagation in CERES and WOFOST crop growth models in Central Europeanclimate conditions. The research was conducted i at the eight individual sites in Austria andthe Czech Republic where measured daily RG values were available as a reference, withseven methods for RG estimation being tested, and ii for the agricultural areas of the CzechRepublic using daily data from 52 weather stations, with five RG estimation methods. In thelatter case the RG values estimated from the hours of sunshine using the ångström-Prescottformula were used as the standard method because of the lack of measured RG data. At thesite level we found that even the use of methods based on hours of sunshine, which showedthe lowest bias in RG estimates, led to a significant distortion of the key crop model outputs.When the ångström-Prescott method was used to estimate RG, for example, deviationsgreater than ±10 per cent in winter wheat and spring barley yields were noted in 5 to 6 percent of cases. The precision of the yield estimates and other crop model outputs was lowerwhen RG estimates based on the diurnal temperature range and cloud cover were used (mean bias error 2.0 to 4.1 per cent. The methods for estimating RG from the diurnal temperature range produced a wheat yield bias of more than 25 per cent in 12 to 16 per cent of the seasons. Such uncertainty in the crop model outputs makes the reliability of any seasonal yield forecasts or climate change impact assessments questionable if they are based on this type of data. The spatial assessment of the RG data uncertainty propagation over the winter wheat yields also revealed significant differences within the study area. We

  4. The Economic Consequences of a Large EMU Results of Macroeconomic Model Simulations

    Directory of Open Access Journals (Sweden)

    Fritz Breuss

    1997-05-01

    Full Text Available Recent economic forecasts increase the probability that firstly, the EMU can start as planned on January 1, 1999 and secondly, that it will start with a large group of countries. The economic implications of the artificially unification of "hard-currency" and "soft-currency" countries are analysed by means of macroeconomic model simulations. The results of a large "non-optimal" EMU are as expected. On the one hand, there are positive income effects for all countries although unevenly distributed over the participants on the other hand, the internal (inflation and external (value of the Euro vis-à-vis the Dollar stability are at risk. The "hard-currency" group will be the major winner (in terms of real GDP and employment, whereas the "soft-currency" group has to carry the adjustment costs to a regime of fixed exchange rates (Euro which results in slower growth, decline in employment and a deterioration of their budgetary position. The necessary convergence of prices and interest rates leads to an increase (decrease of inflation and interest rates in the "hard-currency" countries ("soft-currency" countries. If the EMU will start with a large group there will be a tendency to devalue the Euro against the Dollar. As a consequence of the uneven economic performance of a large (non-optimal EMU I would suggest to start the EMU with a core group of "hard-currency" countries. After this mini EMU succeeded the other Member States could join the EMU.

  5. The Economic Consequences of a Large EMU – Results of Macroeconomic Model Simulations

    Directory of Open Access Journals (Sweden)

    Fritz Breuss

    1997-05-01

    Full Text Available Recent economic forecasts increase the probability that firstly, the EMU can start as planned on January 1, 1999 and secondly, that it will start with a large group of countries. The economic implications of the artificially unification of "hard-currency" and "soft-currency" countries are analysed by means of macroeconomic model simulations. The results of a large "non-optimal" EMU are as expected. On the one hand, there are positive income effects for all countries – although unevenly distributed over the participants – on the other hand, the internal (inflation and external (value of the Euro vis-à-vis the Dollar stability are at risk. The "hard-currency" group will be the major winner (in terms of real GDP and employment, whereas the "soft-currency" group has to carry the adjustment costs to a regime of fixed exchange rates (Euro which results in slower growth, decline in employment and a deterioration of their budgetary position. The necessary convergence of prices and interest rates leads to an increase (decrease of inflation and interest rates in the "hard-currency" countries ("soft-currency" countries. If the EMU will start with a large group there will be a tendency to devalue the Euro against the Dollar. As a consequence of the uneven economic performance of a large (non-optimal EMU I would suggest to start the EMU with a core group of "hard-currency" countries. After this mini EMU succeeded the other Member States could join the EMU.

  6. Integrating Domain Knowledge Differences into Modeling User Clicks on Search Result Pages

    NARCIS (Netherlands)

    Karanam, S.; van Oostendorp, H.

    2016-01-01

    Computational cognitive models developed so far do not incorporate any effect of individual differences in domain knowledge of users in predicting user clicks on search result pages. We address this problem using a cognitive model of information search which enables us to use two semantic spaces

  7. Modelling of water potential and water uptake rate of tomato plants in the greenhouse: preliminary results.

    NARCIS (Netherlands)

    Bruggink, G.T.; Schouwink, H.E.; Gieling, Th.H.

    1988-01-01

    A dynamic model is presented which predicts water potential and water uptake rate of greenhouse tomato plants using transpiration rate as input. The model assumes that water uptake is the resultant of water potential and hydraulic resistance, and that water potential is linearly related to water con

  8. The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results

    NARCIS (Netherlands)

    G.L. Falchetto,; Coster, D.; Coelho, R.; Scott, B. D.; Figini, L.; Kalupin, D.; Nardon, E.; Nowak, S.; L.L. Alves,; Artaud, J. F.; Basiuk, V.; João P.S. Bizarro,; C. Boulbe,; Dinklage, A.; Farina, D.; B. Faugeras,; Ferreira, J.; Figueiredo, A.; Huynh, P.; Imbeaux, F.; Ivanova-Stanik, I.; Jonsson, T.; H.-J. Klingshirn,; Konz, C.; Kus, A.; Marushchenko, N. B.; Pereverzev, G.; M. Owsiak,; Poli, E.; Peysson, Y.; R. Reimer,; Signoret, J.; Sauter, O.; Stankiewicz, R.; Strand, P.; Voitsekhovitch, I.; Westerhof, E.; T. Zok,; Zwingmann, W.; ITM-TF contributors,; ASDEX Upgrade team,; JET-EFDA Contributors,

    2014-01-01

    A selection of achievements and first physics results are presented of the European Integrated Tokamak Modelling Task Force (EFDA ITM-TF) simulation framework, which aims to provide a standardized platform and an integrated modelling suite of validated numerical codes for the simulation and

  9. Conceptual Incoherence as a Result of the Use of Multiple Historical Models in School Textbooks

    Science.gov (United States)

    Gericke, Niklas M.; Hagberg, Mariana

    2010-01-01

    This paper explores the occurrence of conceptual incoherence in upper secondary school textbooks resulting from the use of multiple historical models. Swedish biology and chemistry textbooks, as well as a selection of books from English speaking countries, were examined. The purpose of the study was to identify which models are used to represent…

  10. AFSC/RACE/GAP/Laman: Model Results of Aleutian Island POP distributions

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The data supporting the "Model Results of Aleutian Island POP distributions" manuscript are distribution and abundance of Pacific ocean perch from RACEBase,...

  11. Results of a modeling workshop concerning development of the Beluga coal resource in Alaska

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This report summarizes the results of a modeling workshop concerning development of the Beluga coal resource in Alaska. The workshop was facilitated by the AEA Group...

  12. Removal of arsenic from wastewaters by cryptocrystalline magnesite: complimenting experimental results with modelling

    CSIR Research Space (South Africa)

    Masindi, Vhahangwele

    2016-02-01

    Full Text Available -1 Journal of Cleaner Production Removal of arsenic from wastewaters by cryptocrystalline magnesite: complimenting experimental results with modelling Vhahangwele Masindi W. Mugera Gitari Keywords: Arsenic Mine leachates Cryptocrystalline...

  13. Experimental and modelling results of a parallel-plate based active magnetic regenerator

    DEFF Research Database (Denmark)

    Tura, A.; Nielsen, Kaspar Kirstein; Rowe, A.

    2012-01-01

    The performance of a permanent magnet magnetic refrigerator (PMMR) using gadolinium parallel plates is described. The configuration and operating parameters are described in detail. Experimental results are compared to simulations using an established twodimensional model of an active magnetic...

  14. User's guide to Model Viewer, a program for three-dimensional visualization of ground-water model results

    Science.gov (United States)

    Hsieh, Paul A.; Winston, Richard B.

    2002-01-01

    Model Viewer is a computer program that displays the results of three-dimensional groundwater models. Scalar data (such as hydraulic head or solute concentration) may be displayed as a solid or a set of isosurfaces, using a red-to-blue color spectrum to represent a range of scalar values. Vector data (such as velocity or specific discharge) are represented by lines oriented to the vector direction and scaled to the vector magnitude. Model Viewer can also display pathlines, cells or nodes that represent model features such as streams and wells, and auxiliary graphic objects such as grid lines and coordinate axes. Users may crop the model grid in different orientations to examine the interior structure of the data. For transient simulations, Model Viewer can animate the time evolution of the simulated quantities. The current version (1.0) of Model Viewer runs on Microsoft Windows 95, 98, NT and 2000 operating systems, and supports the following models: MODFLOW-2000, MODFLOW-2000 with the Ground-Water Transport Process, MODFLOW-96, MOC3D (Version 3.5), MODPATH, MT3DMS, and SUTRA (Version 2D3D.1). Model Viewer is designed to directly read input and output files from these models, thus minimizing the need for additional postprocessing. This report provides an overview of Model Viewer. Complete instructions on how to use the software are provided in the on-line help pages.

  15. Updating the CHAOS series of field models using Swarm data and resulting candidate models for IGRF-12

    DEFF Research Database (Denmark)

    Finlay, Chris; Olsen, Nils; Tøffner-Clausen, Lars

    th order spline representation with knot points spaced at 0.5 year intervals. The resulting field model is able to consistently fit data from six independent low Earth orbit satellites: Oersted, CHAMP, SAC-C and the three Swarm satellites. As an example, we present comparisons of the excellent model......Ten months of data from ESA's Swarm mission, together with recent ground observatory monthly means, are used to update the CHAOS series of geomagnetic field models with a focus on time-changes of the core field. As for previous CHAOS field models quiet-time, night-side, data selection criteria...

  16. The comparison of measured impedance of the bladder tissue with the computational modeling results

    Directory of Open Access Journals (Sweden)

    ahmad keshtkar

    2015-11-01

    Full Text Available Introduction: The electrical impedance spectroscopy technique can be used to measure the electrical impedance of the human bladder tissue, for differentiating pathological changes in the urothelium. Methods: In this study, the electrical impedance spectroscopy technique and then, a numerical technique, finite element analysis (FEA were used to model the electrical properties of this tissue to predict the impedance spectrum of the normal and malignant areas of this organ. Results: After determining and comparing the modeled data with the experimental results, it is believed that there are some factors that may affect the measurement results. Thus, the effect of inflammation, edema, changes in the applied pressure over the probe and the distensible property of the bladder tissue were considered. Furthermore, the current distribution inside the human bladder tissue was modeled in normal and malignant cases using the FEA. This model results showed that very little of the current actually flows through the urothelium and much of the injected current flows through the connective tissue beneath the urothelium. Conclusion: The results of the models do not explain the measurements results. In conclusion, there are many factors, which may account for discrepancies between the measured and modeled data.

  17. New Results on Robust Model Predictive Control for Time-Delay Systems with Input Constraints

    Directory of Open Access Journals (Sweden)

    Qing Lu

    2014-01-01

    Full Text Available This paper investigates the problem of model predictive control for a class of nonlinear systems subject to state delays and input constraints. The time-varying delay is considered with both upper and lower bounds. A new model is proposed to approximate the delay. And the uncertainty is polytopic type. For the state-feedback MPC design objective, we formulate an optimization problem. Under model transformation, a new model predictive controller is designed such that the robust asymptotical stability of the closed-loop system can be guaranteed. Finally, the applicability of the presented results are demonstrated by a practical example.

  18. Theoretical results on the tandem junction solar cell based on its Ebers-Moll transistor model

    Science.gov (United States)

    Goradia, C.; Vaughn, J.; Baraona, C. R.

    1980-01-01

    A one-dimensional theoretical model of the tandem junction solar cell (TJC) with base resistivity greater than about 1 ohm-cm and under low level injection has been derived. This model extends a previously published conceptual model which treats the TJC as an npn transistor. The model gives theoretical expressions for each of the Ebers-Moll type currents of the illuminated TJC and allows for the calculation of the spectral response, I(sc), V(oc), FF and eta under variation of one or more of the geometrical and material parameters and 1MeV electron fluence. Results of computer calculations based on this model are presented and discussed. These results indicate that for space applications, both a high beginning of life efficiency, greater than 15% AM0, and a high radiation tolerance can be achieved only with thin (less than 50 microns) TJC's with high base resistivity (greater than 10 ohm-cm).

  19. RELATIONSHIP BETWEEN ISO 9001 CERTIFICATION MATURITY AND EFQM BUSINESS EXCELLENCE MODEL RESULTS

    Directory of Open Access Journals (Sweden)

    Luis Miguel Fonseca

    2015-07-01

    Full Text Available Purpose: This exploratory research evaluates if there a relationship between the number of years since an organization has achieved ISO 9001 certification and the highest level of recognition received by the same organization with the EFQM Business Excellence Model.Methodology/Approach: After state of the art review a detailed comparison between both models was made. Fifty two Portuguese organizations were considered and Correlation coefficient Spearman Rho was used to investigate the possible relationships.Findings: Conclusion is that there is indeed a moderate positive correlation between these two variables, the higher the number of years of ISO 9001 certification, the higher the results of the organization EFQM model evaluation and recognition. This supports the assumption that ISO 9001 International Standard by incorporating many of the principles present in the EFQM Business Excellence Model is consistent with this model and can be considered as a step towards that direction.Research Limitation/implication: Due to the dynamic nature of these models that might change over time and the possible time delays between implementation and results, more in-depth studies like experimental design or a longitudinal quasi-experimental design could be used to confirm the results of this investigation.Originality/Value of paper: This research gives additional insights on conjunct studies of both models. The use of external evaluation results carried out by the independent EFQM assessors minimizes the possible bias of previous studies accessing the value of ISO 9001 certification.

  20. Early Results from a Multi-Thermal Model for the Cooling of Post-Flare Loops

    Science.gov (United States)

    Reeves, K. K.; Warren, H. P.

    2002-01-01

    We have developed a multi-thermal model for the cooling of post-flare loops. The model consists of an arcade of many nested loops that reconnect and begin cooling at slightly different times, and have different cooling profiles because of the different loop lengths across the arcade. Cooling due to both conductive and radiative processes is taken into account. The free parameters in the model include initial temperature and density in the loop, loop width and the initial loop length. The results from the model are then compared to TRACE and SXT observations. Our many-loop model does a much better job of predicting the SXT and TRACE light curves than a similar model with only one loop.

  1. NACA 0012 benchmark model experimental flutter results with unsteady pressure distributions

    Science.gov (United States)

    Rivera, Jose A., Jr.; Dansberry, Bryan E.; Bennett, Robert M.; Durham, Michael H.; Silva, Walter A.

    1992-01-01

    The Structural Dynamics Division at NASA Langley Research Center has started a wind tunnel activity referred to as the Benchmark Models Program. The primary objective of the program is to acquire measured dynamic instability and corresponding pressure data that will be useful for developing and evaluating aeroelastic type CFD codes currently in use or under development. The program is a multi-year activity that will involve testing of several different models to investigate various aeroelastic phenomena. This paper describes results obtained from a second wind tunnel test of the first model in the Benchmark Models Program. This first model consisted of a rigid semispan wing having a rectangular planform and a NACA 0012 airfoil shape which was mounted on a flexible two degree-of-freedom mount system. Experimental flutter boundaries and corresponding unsteady pressure distribution data acquired over two model chords located at the 60 and 95 percent span stations are presented.

  2. Dinosaur Peptides Suggest Mechanisms of Protein Survival

    Energy Technology Data Exchange (ETDEWEB)

    San Antonio, James D.; Schweitzer, Mary H.; Jensen, Shane T.; Kalluri, Raghu; Buckley, Michael; Orgel, Joseph P.R.O. (Harvard-Med); (IIT); (NCSU); (UPENN); (Manchester); (Orthovita)

    2011-09-16

    Eleven collagen peptide sequences recovered from chemical extracts of dinosaur bones were mapped onto molecular models of the vertebrate collagen fibril derived from extant taxa. The dinosaur peptides localized to fibril regions protected by the close packing of collagen molecules, and contained few acidic amino acids. Four peptides mapped to collagen regions crucial for cell-collagen interactions and tissue development. Dinosaur peptides were not represented in more exposed parts of the collagen fibril or regions mediating intermolecular cross-linking. Thus functionally significant regions of collagen fibrils that are physically shielded within the fibril may be preferentially preserved in fossils. These results show empirically that structure-function relationships at the molecular level could contribute to selective preservation in fossilized vertebrate remains across geological time, suggest a 'preservation motif', and bolster current concepts linking collagen structure to biological function. This non-random distribution supports the hypothesis that the peptides are produced by the extinct organisms and suggests a chemical mechanism for survival.

  3. Environmental Model Interoperability Enabled by Open Geospatial Standards - Results of a Feasibility Study (Invited)

    Science.gov (United States)

    Benedict, K. K.; Yang, C.; Huang, Q.

    2010-12-01

    The availability of high-speed research networks such as the US National Lambda Rail and the GÉANT network, scalable on-demand commodity computing resources provided by public and private "cloud" computing systems, and increasing demand for rapid access to the products of environmental models for both research and public policy development contribute to a growing need for the evaluation and development of environmental modeling systems that distribute processing, storage, and data delivery capabilities between network connected systems. In an effort to address the feasibility of developing a standards-based distributed modeling system in which model execution systems are physically separate from data storage and delivery systems, the research project presented in this paper developed a distributed dust forecasting system in which two nested atmospheric dust models are executed at George Mason University (GMU, in Fairfax, VA) while data and model output processing services are hosted at the University of New Mexico (UNM, in Albuquerque, NM). Exchange of model initialization and boundary condition parameters between the servers at UNM and the model execution systems at GMU is accomplished through Open Geospatial Consortium (OGC) Web Coverage Services (WCS) and Web Feature Services (WFS) while model outputs are pushed from GMU systems back to UNM using a REST web service interface. In addition to OGC and non-OGC web services for exchange between UNM and GMU, the servers at UNM also provide access to the input meteorological model products, intermediate and final dust model outputs, and other products derived from model outputs through OGC WCS, WFS, and OGC Web Map Services (WMS). The performance of the nested versus non-nested models is assessed in this research, with the results of the performance analysis providing the core content of the produced feasibility study. System integration diagram illustrating the storage and service platforms hosted at the Earth Data

  4. A Nuclear Interaction Model for Understanding Results of Single Event Testing with High Energy Protons

    Science.gov (United States)

    Culpepper, William X.; ONeill, Pat; Nicholson, Leonard L.

    2000-01-01

    An internuclear cascade and evaporation model has been adapted to estimate the LET spectrum generated during testing with 200 MeV protons. The model-generated heavy ion LET spectrum is compared to the heavy ion LET spectrum seen on orbit. This comparison is the basis for predicting single event failure rates from heavy ions using results from a single proton test. Of equal importance, this spectra comparison also establishes an estimate of the risk of encountering a failure mode on orbit that was not detected during proton testing. Verification of the general results of the model is presented based on experiments, individual part test results, and flight data. Acceptance of this model and its estimate of remaining risk opens the hardware verification philosophy to the consideration of radiation testing with high energy protons at the board and box level instead of the more standard method of individual part testing with low energy heavy ions.

  5. A Tower Model for Lightning Overvoltage Studies Based on the Result of an FDTD Simulation

    Science.gov (United States)

    Noda, Taku

    This paper describes a method for deriving a transmission tower model for EMTP lightning overvoltage studies from a numerical electromagnetic simulation result obtained by the FDTD (Finite Difference Time Domain) method. The FDTD simulation carried out in this paper takes into account the following items which have been ignored or over-simplified in previously-presented simulations: (i) resistivity of the ground soil; (ii) arms, major slant elements, and foundations of the tower; (iii) development speed of the lightning return stroke. For validation purpose a pulse test of a 500-kV transmission tower is simulated, and a comparison with the measured result shows that the present FDTD simulation gives a sufficiently accurate result. Using this validated FDTD-based simulation method the insulator-string voltages of a tower for a lightning stroke are calculated, and based on the simulation result the parameter values of the proposed tower model for EMTP studies are determined in a systematic way. Since previously-presented models include trial-and-error process in the parameter determination, it can be said that the proposed model is more general in this regard. As an illustrative example, the 500-kV transmission tower mentioned above is modeled, and it is shown that the derived model closely reproduces the FDTD simulation result.

  6. Construction of an extended library of adult male 3D models: rationale and results

    Science.gov (United States)

    Broggio, D.; Beurrier, J.; Bremaud, M.; Desbrée, A.; Farah, J.; Huet, C.; Franck, D.

    2011-12-01

    In order to best cover the possible extent of heights and weights of male adults the construction of 25 whole body 3D models has been undertaken. Such a library is thought to be useful to specify the uncertainties and relevance of dosimetry calculations carried out with models representing individuals of average body heights and weights. Representative 3D models of Caucasian body types are selected in a commercial database according to their height and weight, and 3D models of the skeleton and internal organs are designed using another commercial dataset. A review of the literature enabled one to fix volume or mass target values for the skeleton, soft organs, skin and fat content of the selected individuals. The composition of the remainder tissue is fixed so that the weight of the voxel models equals the weight of the selected individuals. After mesh and NURBS modelling, volume adjustment of the selected body shapes and additional voxel-based work, 25 voxel models with 109 identified organs or tissue are obtained. Radiation transport calculations are carried out with some of the developed models to illustrate potential uses. The following points are discussed throughout this paper: justification of the fixed or obtained models' features regarding available and relevant literature data; workflow and strategy for major modelling steps; advantages and drawbacks of the obtained library as compared with other works. The construction hypotheses are explained and justified in detail since future calculation results obtained with this library will depend on them.

  7. A knockin mouse model for human ATP4aR703C mutation identified in familial gastric neuroendocrine tumors recapitulates the premalignant condition of the human disease and suggests new therapeutic strategies

    Directory of Open Access Journals (Sweden)

    Oriol Calvete

    2016-09-01

    Full Text Available By whole exome sequencing, we recently identified a missense mutation (p.R703C in the human ATP4a gene, which encodes the proton pump responsible for gastric acidification. This mutation causes an aggressive familial type I gastric neuroendocrine tumor in homozygous individuals. Affected individuals show an early onset of the disease, characterized by gastric hypoacidity, hypergastrinemia, iron-deficiency anemia, gastric intestinal metaplasia and, in one case, an associated gastric adenocarcinoma. Total gastrectomy was performed as the definitive treatment in all affected individuals. We now describe the generation and characterization of a knockin mouse model for the ATP4aR703C mutation to better understand the tumorigenesis process. Homozygous mice recapitulated most of the phenotypical alterations that were observed in human individuals, strongly suggesting that this mutation is the primary alteration responsible for disease development. Homozygous mice developed premalignant condition with severe hyperplasia, dysplasia and glandular metaplasia in the stomach. Interestingly, gastric acidification in homozygous mice, induced by treatment with 3% HCl acid in the drinking water, prevented (if treated from birth or partially reverted (if treated during adulthood the development of glandular metaplasia and dysplasia in the stomach and partially rescued the abnormal biochemical parameters. We therefore suggest that, in this model, achlorhydria contributes to tumorigenesis to a greater extent than hypergastrinemia. Furthermore, our mouse model represents a unique and novel tool for studying the pathologies associated with disturbances in gastric acid secretion.

  8. Suggestions on photons and fermions

    CERN Document Server

    Alvargonzalez, R

    2007-01-01

    In this paper we suggest a configuration of photons consistent with a spin $\\hbar$, and a configuration of the fermions coherent with a spin $\\hbar/2$. These suggested configurations open the way to further analyses which lead to the following conclusions: - There cannot exist elementary particles of spin $\\hbar/2$ with a mass inferior to $1m_e$ or with a radius greater than $1l_e$. - The electrostatic force derives from the centrifugal forces inherent to the spin and are propagated by photons. - The derivation of the electrostatic force explains the existence of positive and negative charges and Coulomb's law. - The enormous differences between the centrifugal forces and the centripetal forces at the surface of the protons give rise to quantic fluctuations of space which generate the energy flows necessary for equilibrium. These energy flows can explain gravitation and the strong force. - The mass of the proton, $m_p$, and the mass of the neutron, $m_n$, must each have a concrete value required for the cohes...

  9. Evaluation of streamflow simulation results of land surface models in GLDAS on the Tibetan plateau

    Science.gov (United States)

    Bai, Peng; Liu, Xiaomang; Yang, Tiantian; Liang, Kang; Liu, Changming

    2016-10-01

    The Global Land Data Assimilation System (GLDAS) project estimates long-term runoff based on land surface models (LSMs) and provides a potential way to solve the issue of nonexistent streamflow data in gauge-sparse regions such as the Tibetan Plateau (TP). However, the reliability of GLDAS runoff data must be validated before being practically applied. In this study, the streamflows simulated by four LSMs (CLM, Noah, VIC, and Mosaic) in GLDAS coupled with a river routing model are evaluated against observed streamflows in five river basins on the TP. The evaluation criteria include four aspects: monthly streamflow value, seasonal cycle of streamflow, annual streamflow trend, and streamflow component partitioning. The four LSMs display varying degrees of biases in monthly streamflow simulations: systematic overestimations are found in the Noah (1.74 ≤ bias ≤ 2.75) and CLM (1.22 ≤ bias ≤ 2.53) models, whereas systematic underestimations are observed in the VIC (0.36 ≤ bias ≤ 0.85) and Mosaic (0.34 ≤ bias ≤ 0.66) models. The Noah model shows the best performance in capturing the temporal variation in monthly streamflow and the seasonal cycle of streamflow, while the VIC model performs the best in terms of bias statistics. The Mosaic model provides the best performance in modeling annual runoff trends and runoff component partitioning. The possible reasons for the different performances of the LSMs are discussed in detail. In order to achieve more accurate streamflow simulations from the LSMs in GLDAS, suggestions are made to further improve the accuracy of the forcing data and parameterization schemes in all models.

  10. DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results

    Directory of Open Access Journals (Sweden)

    Gizzatkulov Nail M

    2010-08-01

    Full Text Available Abstract Background Systems biology research and applications require creation, validation, extensive usage of mathematical models and visualization of simulation results by end-users. Our goal is to develop novel method for visualization of simulation results and implement it in simulation software package equipped with the sophisticated mathematical and computational techniques for model development, verification and parameter fitting. Results We present mathematical simulation workbench DBSolve Optimum which is significantly improved and extended successor of well known simulation software DBSolve5. Concept of "dynamic visualization" of simulation results has been developed and implemented in DBSolve Optimum. In framework of the concept graphical objects representing metabolite concentrations and reactions change their volume and shape in accordance to simulation results. This technique is applied to visualize both kinetic response of the model and dependence of its steady state on parameter. The use of the dynamic visualization is illustrated with kinetic model of the Krebs cycle. Conclusion DBSolve Optimum is a user friendly simulation software package that enables to simplify the construction, verification, analysis and visualization of kinetic models. Dynamic visualization tool implemented in the software allows user to animate simulation results and, thereby, present them in more comprehensible mode. DBSolve Optimum and built-in dynamic visualization module is free for both academic and commercial use. It can be downloaded directly from http://www.insysbio.ru.

  11. Assessing the agricultural costs of climate change: Combining results from crop and economic models

    Science.gov (United States)

    Howitt, R. E.

    2016-12-01

    simultaneously. The paper will briefly discuss some examples of the direct embedding of results from plant growth models in economic models.

  12. New Results on Single-Channel Speech Separation Using Sinusoidal Modeling

    DEFF Research Database (Denmark)

    Mowlaee, Pejman; Christensen, Mads Græsbøll; Jensen, Søren Holdt

    2011-01-01

    We present new results on single-channel speech separation and suggest a new separation approach to improve the speech quality of separated signals from an observed mix- ture. The key idea is to derive a mixture estimator based on sinusoidal parameters. The proposed estimator is aimed at finding...

  13. Exact results for spin dynamics and fractionalization in the Kitaev Model.

    Science.gov (United States)

    Baskaran, G; Mandal, Saptarshi; Shankar, R

    2007-06-15

    We present certain exact analytical results for dynamical spin correlation functions in the Kitaev Model. It is the first result of its kind in nontrivial quantum spin models. The result is also novel: in spite of the presence of gapless propagating Majorana fermion excitations, dynamical two spin correlation functions are identically zero beyond nearest neighbor separation. This shows existence of a gapless but short range spin liquid. An unusual, all energy scale fractionalization of a spin-flip quanta, into two infinitely massive pi fluxes and a dynamical Majorana fermion, is shown to occur. As the Kitaev Model exemplifies topological quantum computation, our result presents new insights into qubit dynamics and generation of topological excitations.

  14. Empirical Results of Modeling EUR/RON Exchange Rate using ARCH, GARCH, EGARCH, TARCH and PARCH models

    Directory of Open Access Journals (Sweden)

    Andreea – Cristina PETRICĂ

    2017-03-01

    Full Text Available The aim of this study consists in examining the changes in the volatility of daily returns of EUR/RON exchange rate using on the one hand symmetric GARCH models (ARCH and GARCH and on the other hand the asymmetric GARCH models (EGARCH, TARCH and PARCH, since the conditional variance is time-varying. The analysis takes into account daily quotations of EUR/RON exchange rate over the period of 04th January 1999 to 13th June 2016. Thus, we are modeling heteroscedasticity by applying different specifications of GARCH models followed by looking for significant parameters and low information criteria (minimum Akaike Information Criterion. All models are estimated using the maximum likelihood method under the assumption of several distributions of the innovation terms such as: Normal (Gaussian distribution, Student’s t distribution, Generalized Error distribution (GED, Student’s with fixed df. Distribution, and GED with fixed parameter distribution. The predominant models turned out to be EGARCH and PARCH models, and the empirical results point out that the best model for estimating daily returns of EUR/RON exchange rate is EGARCH(2,1 with Asymmetric order 2 under the assumption of Student’s t distributed innovation terms. This can be explained by the fact that in case of EGARCH model, the restriction regarding the positivity of the conditional variance is automatically satisfied.

  15. Satellite data for systematic validation of wave model results in the Black Sea

    Science.gov (United States)

    Behrens, Arno; Staneva, Joanna

    2017-04-01

    The Black Sea is with regard to the availability of traditional in situ wave measurements recorded by usual waverider buoys a data sparse semi-enclosed sea. The only possibility for systematic validations of wave model results in such a regional area is the use of satellite data. In the frame of the COPERNICUS Marine Evolution System for the Black Sea that requires wave predictions, the third-generation spectral wave model WAM is used. The operational system is demonstrated based on four years' systematic comparisons with satellite data. The aim of this investigation was to answer two questions. Is the wave model able to provide a reliable description of the wave conditions in the Black Sea and are the satellite measurements suitable for validation purposes on such a regional scale ? Detailed comparisons between measured data and computed model results for the Black Sea including yearly statistics have been done for about 300 satellite overflights per year. The results discussed the different verification schemes needed to review the forecasting skills of the operational system. The good agreement between measured and modeled data supports the expectation that the wave model provides reasonable results and that the satellite data is of good quality and offer an appropriate validation alternative to buoy measurements. This is the required step towards further use of those satellite data for assimilation into the wave fields to improve the wave predictions. Additional support for the good quality of the wave predictions is provided by comparisons between ADCP measurements that are available for a short time period in February 2012 and the corresponding model results at a location near the Bulgarian coast in the western Black Sea. Sensitivity tests with different wave model options and different driving wind fields have been done which identify the appropriate model configuration that provides the best wave predictions. In addition to the comparisons between measured

  16. A computer model to forecast wetland vegetation changes resulting from restoration and protection in coastal Louisiana

    Science.gov (United States)

    Visser, Jenneke M.; Duke-Sylvester, Scott M.; Carter, Jacoby; Broussard, Whitney P.

    2013-01-01

    The coastal wetlands of Louisiana are a unique ecosystem that supports a diversity of wildlife as well as a diverse community of commercial interests of both local and national importance. The state of Louisiana has established a 5-year cycle of scientific investigation to provide up-to-date information to guide future legislation and regulation aimed at preserving this critical ecosystem. Here we report on a model that projects changes in plant community distribution and composition in response to environmental conditions. This model is linked to a suite of other models and requires input from those that simulate the hydrology and morphology of coastal Louisiana. Collectively, these models are used to assess how alternative management plans may affect the wetland ecosystem through explicit spatial modeling of the physical and biological processes affected by proposed modifications to the ecosystem. We have also taken the opportunity to advance the state-of-the-art in wetland plant community modeling by using a model that is more species-based in its description of plant communities instead of one based on aggregated community types such as brackish marsh and saline marsh. The resulting model provides an increased level of ecological detail about how wetland communities are expected to respond. In addition, the output from this model provides critical inputs for estimating the effects of management on higher trophic level species though a more complete description of the shifts in habitat.

  17. Updating Finite Element Model of a Wind Turbine Blade Section Using Experimental Modal Analysis Results

    Directory of Open Access Journals (Sweden)

    Marcin Luczak

    2014-01-01

    Full Text Available This paper presents selected results and aspects of the multidisciplinary and interdisciplinary research oriented for the experimental and numerical study of the structural dynamics of a bend-twist coupled full scale section of a wind turbine blade structure. The main goal of the conducted research is to validate finite element model of the modified wind turbine blade section mounted in the flexible support structure accordingly to the experimental results. Bend-twist coupling was implemented by adding angled unidirectional layers on the suction and pressure side of the blade. Dynamic test and simulations were performed on a section of a full scale wind turbine blade provided by Vestas Wind Systems A/S. The numerical results are compared to the experimental measurements and the discrepancies are assessed by natural frequency difference and modal assurance criterion. Based on sensitivity analysis, set of model parameters was selected for the model updating process. Design of experiment and response surface method was implemented to find values of model parameters yielding results closest to the experimental. The updated finite element model is producing results more consistent with the measurement outcomes.

  18. SModelS: A Tool for Making Systematic Use of Simplified Models Results

    Science.gov (United States)

    Waltenberger, Wolfgang; SModelS Group.

    2016-10-01

    We present an automated software tool ”SModelS” to systematically confront theories Beyond the Standard Model (BSM) with experimental data. The tool consists of a general procedure to decompose such BSM theories into their Simplified Models Spectra (SMS). In addition, SModelS features a database containing the majority of the published SMS results of CMS and ATLAS. These results consist of the 95% confidence level upper limits on signal production cross sections. The two components together allow us to quickly confront any BSM model with LHC results. As a show-case example we will briefly discuss an application of our procedure to a specific supersymmetric model. It is one of our ongoing efforts to extend the framework to include also efficiency maps produced either by the experimental collaborations, by efforts performed within the phenomenological groups, or possibly also by ourselves. While the current implementation can handle null results only, it is our ultimate goal to build the Next Standard Model in a bottom-up fashion from both negative and positive results of several experiments. The implementation is open source, written in python, and available from http://smodels.hephy.at.

  19. Gearbox Reliability Collaborative Phase 1 and 2: Testing and Modeling Results; Preprint

    Energy Technology Data Exchange (ETDEWEB)

    Keller, J.; Guo, Y.; LaCava, W.; Link, H.; McNiff, B.

    2012-05-01

    The Gearbox Reliability Collaborative (GRC) investigates root causes of wind turbine gearbox premature failures and validates design assumptions that affect gearbox reliability using a combined testing and modeling approach. Knowledge gained from the testing and modeling of the GRC gearboxes builds an understanding of how the selected loads and events translate into internal responses of three-point mounted gearboxes. This paper presents some testing and modeling results of the GRC research during Phase 1 and 2. Non-torque loads from the rotor including shaft bending and thrust, traditionally assumed to be uncoupled with gearbox, affect gear and bearing loads and resulting gearbox responses. Bearing clearance increases bearing loads and causes cyclic loading, which could contribute to a reduced bearing life. Including flexibilities of key drivetrain subcomponents is important in order to reproduce the measured gearbox response during the tests using modeling approaches.

  20. Results of recent Pacific-Arctic ice-ocean modeling studies at the Naval Postgraduate School

    Institute of Scientific and Technical Information of China (English)

    Jaclyn Clement Kinney; Wieslaw Maslowski

    2008-01-01

    Summary of results from a high - resolution pan - Arctic ice -'ocean model are presented for the northern North Pacific, Bering, Chukchi, and Beaufort seas.The main focus is on the mean circulation, communication from the Gulf of Alaska across the Bering Sea into the western Arctic Ocean and on mesoscale eddy activity within several important ecosystems. Model results from 1979 -2004 are compared to observations whenever possible. The high spatial model resolution at 1/12o (or~9 -km) in the horizontal and 45 levels in the vertical direction allows for representation of eddies with diameters as small as 36 km. However, we believe that upcoming new model integrations at even higher resolution will allow us to resolve even smaller eddies. This is especially important at the highest latitudes where the Rossby radius of deformation is as small as 10 km or less.

  1. Soil gas and radon entry into a simple test structure: Comparison of experimental and modelling results

    DEFF Research Database (Denmark)

    Andersen, C.E.; Søgaard-Hansen, J.; Majborn, B.

    1994-01-01

    A radon test structure has been established at a field site at Riso National Laboratory. Measurements have been made of soil gas entry rates, pressure couplings and radon depletion. The experimental results have been compared with results obtained from measured soil parameters and a two......-dimensional steady-state numerical model of Darcy flow and combined diffusive and advective transport of radon. For most probe locations, the calculated values of the pressure couplings and the radon depletion agree well with the measured values, thus verifying important elements of the Darcy flow approximation......, and the ability of the model to treat combined diffusive and advective transport of radon. However, the model gives an underestimation of the soil gas entry rate. Even if it is assumed that the soil has a permeability equal to the highest of the measured values, the model underestimates the soil gas entry rate...

  2. A Calibration of the Wierzbicki-Xue Damage Model Using Charpy Test Results

    Directory of Open Access Journals (Sweden)

    Kim Jong-Bong

    2015-01-01

    Full Text Available Damage models are frequently used to predict fractures in large deformation problems such as penetration of a projectile into a target. Though many damage models have been proposed so far, coefficients of each model have been provided for only a few materials. In this study, the coefficients of the Wierzbicki-Xue (2005 damage model for tungsten heavy alloy (DX2HCMF are determined using the Charpy impact test. The Wierzbicki-Xue fracture criterion is implemented into NET3D code in which a node-split algorithm is built in. By comparing the energy absorbed in the Charpy test with the results of finite element analysis, the fracture model coefficients are determined.

  3. Quantifying Uncertainty in Model Predictions for the Pliocene (Plio-QUMP): Initial results

    Science.gov (United States)

    Pope, J.O.; Collins, M.; Haywood, A.M.; Dowsett, H.J.; Hunter, S.J.; Lunt, D.J.; Pickering, S.J.; Pound, M.J.

    2011-01-01

    Examination of the mid-Pliocene Warm Period (mPWP; ~. 3.3 to 3.0. Ma BP) provides an excellent opportunity to test the ability of climate models to reproduce warm climate states, thereby assessing our confidence in model predictions. To do this it is necessary to relate the uncertainty in model simulations of mPWP climate to uncertainties in projections of future climate change. The uncertainties introduced by the model can be estimated through the use of a Perturbed Physics Ensemble (PPE). Developing on the UK Met Office Quantifying Uncertainty in Model Predictions (QUMP) Project, this paper presents the results from an initial investigation using the end members of a PPE in a fully coupled atmosphere-ocean model (HadCM3) running with appropriate mPWP boundary conditions. Prior work has shown that the unperturbed version of HadCM3 may underestimate mPWP sea surface temperatures at higher latitudes. Initial results indicate that neither the low sensitivity nor the high sensitivity simulations produce unequivocally improved mPWP climatology relative to the standard. Whilst the high sensitivity simulation was able to reconcile up to 6 ??C of the data/model mismatch in sea surface temperatures in the high latitudes of the Northern Hemisphere (relative to the standard simulation), it did not produce a better prediction of global vegetation than the standard simulation. Overall the low sensitivity simulation was degraded compared to the standard and high sensitivity simulations in all aspects of the data/model comparison. The results have shown that a PPE has the potential to explore weaknesses in mPWP modelling simulations which have been identified by geological proxies, but that a 'best fit' simulation will more likely come from a full ensemble in which simulations that contain the strengths of the two end member simulations shown here are combined. ?? 2011 Elsevier B.V.

  4. Coupling Landform Evolution and Soil Pedogenesis - Initial Results From the SSSPAM5D Model

    Science.gov (United States)

    Willgoose, G. R.; Welivitiya, W. D. D. P.; Hancock, G. R.; Cohen, S.

    2015-12-01

    Evolution of soil on a dynamic landform is a crucial next step in landscape evolution modelling. Some attempts have been taken such as MILESD by Vanwalleghem et al. to develop a first model which is capable of simultaneously evolving both the soil profile and the landform. In previous work we have presented physically based models for soil pedogenesis, mARM and SSSPAM. In this study we present the results of coupling a landform evolution model with our SSSPAM5D soil pedogenesis model. In previous work the SSSPAM5D soil evolution model was used to identify trends of the soil profile evolution on a static landform. Two pedogenetic processes, namely (1) armouring due to erosion, and (2) physical and chemical weathering were used in those simulations to evolve the soil profile. By incorporating elevation changes (due to erosion and deposition) we have advanced the SSSPAM5D modelling framework into the realm of landscape evolution. Simulations have been run using elevation and soil grading data of the engineered landform (spoil heap) at the Ranger Uranium Mine, Northern Territory, Australia. The results obtained for the coupled landform-soil evolution simulations predict the erosion of high slope areas, development of rudimentary channel networks in the landform and deposition of sediments in lowland areas, and qualitatively consistent with landform evolution models on their own. Examination of the soil profile characteristics revealed that hill crests are weathering dominated and tend to develop a thick soil layer. The steeper hillslopes at the edge of the landform are erosion dominated with shallow soils while the foot slopes are deposition dominated with thick soil layers. The simulation results of our coupled landform and soil evolution model provide qualitatively correct and timely characterization of the soil evolution on a dynamic landscape. Finally we will compare the characteristics of erosion and deposition predicted by the coupled landform-soil SSSPAM

  5. Ares I Scale Model Acoustic Test Above Deck Water Sound Suppression Results

    Science.gov (United States)

    Counter, Douglas D.; Houston, Janice D.

    2011-01-01

    The Ares I Scale Model Acoustic Test (ASMAT) program test matrix was designed to determine the acoustic reduction for the Liftoff acoustics (LOA) environment with an above deck water sound suppression system. The scale model test can be used to quantify the effectiveness of the water suppression system as well as optimize the systems necessary for the LOA noise reduction. Several water flow rates were tested to determine which rate provides the greatest acoustic reductions. Preliminary results are presented.

  6. Modelling global freshwater resources using WaterGAP 2.2 - model overview, selected results and applications

    Science.gov (United States)

    Müller Schmied, Hannes; Adam, Linda; Döll, Petra; Eisner, Stephanie; Flörke, Martina; Güntner, Andreas; Kynast, Ellen; Portmann, Felix T.; Riedel, Claudia; Schneider, Christoph; Song, Qi; Wattenbach, Martin; Zhang, Jing

    2014-05-01

    The estimation of global freshwater flows and storages and their dynamics is essential for the assessment of historical and future water availability both for mankind and ecosystems. WaterGAP 2 is a state-of-the-art water model covering the entire global land area (except Antarctica) on a 0.5° by 0.5° grid. WaterGAP consists of a set of water use models and a hydrological model. Five global water use models representing the sectors irrigation, domestic water demand, manufacturing industries, livestock farming and cooling of thermal power plants inform the sub-model GWSWUSE which calculates net water abstractions distinguishing surface water and groundwater sources. Water flows and storages are simulated by the WaterGAP Global Hydrology Model (WGHM). WGHM is calibrated against measured discharge for basins covering around 50 % of global land area. Since the original development of WaterGAP in the late 1990s, new input data and refined process algorithms have led to a significant improvement of the results. We present the current version WaterGAP 2.2 including selected results (e.g. discharge seasonality, water storage) and the global water balance for the time period 1971-2000. In addition, some examples of the application of WaterGAP output, e.g. within the GRACE community and for global environmental assessments are shown, reflecting the importance of global hydrology modeling in our globalized world.

  7. The use of the k - {epsilon} turbulence model within the Rossby Centre regional ocean climate model: parameterization development and results

    Energy Technology Data Exchange (ETDEWEB)

    Markus Meier, H.E. [Swedish Meteorological and Hydrological Inst., Norrkoeping (Sweden). Rossby Centre

    2000-09-01

    As mixing plays a dominant role for the physics of an estuary like the Baltic Sea (seasonal heat storage, mixing in channels, deep water mixing), different mixing parameterizations for use in 3D Baltic Sea models are discussed and compared. For this purpose two different OGCMs of the Baltic Sea are utilized. Within the Swedish regional climate modeling program, SWECLIM, a 3D coupled ice-ocean model for the Baltic Sea has been coupled with an improved version of the two-equation k - {epsilon} turbulence model with corrected dissipation term, flux boundary conditions to include the effect of a turbulence enhanced layer due to breaking surface gravity waves and a parameterization for breaking internal waves. Results of multi-year simulations are compared with observations. The seasonal thermocline is simulated satisfactory and erosion of the halocline is avoided. Unsolved problems are discussed. To replace the controversial equation for dissipation the performance of a hierarchy of k-models has been tested and compared with the k - {epsilon} model. In addition, it is shown that the results of the mixing parameterization depend very much on the choice of the ocean model. Finally, the impact of two mixing parameterizations on Baltic Sea climate is investigated. In this case the sensitivity of mean SST, vertical temperature and salinity profiles, ice season and seasonal cycle of heat fluxes is quite large.

  8. A chemical energy approach of avascular tumor growth: multiscale modeling and qualitative results.

    Science.gov (United States)

    Ampatzoglou, Pantelis; Dassios, George; Hadjinicolaou, Maria; Kourea, Helen P; Vrahatis, Michael N

    2015-01-01

    In the present manuscript we propose a lattice free multiscale model for avascular tumor growth that takes into account the biochemical environment, mitosis, necrosis, cellular signaling and cellular mechanics. This model extends analogous approaches by assuming a function that incorporates the biochemical energy level of the tumor cells and a mechanism that simulates the behavior of cancer stem cells. Numerical simulations of the model are used to investigate the morphology of the tumor at the avascular phase. The obtained results show similar characteristics with those observed in clinical data in the case of the Ductal Carcinoma In Situ (DCIS) of the breast.

  9. [DESCRIPTION AND PRESENTATION OF THE RESULTS OF ELECTROENCEPHALOGRAM PROCESSING USING AN INFORMATION MODEL].

    Science.gov (United States)

    Myznikov, I L; Nabokov, N L; Rogovanov, D Yu; Khankevich, Yu R

    2016-01-01

    The paper proposes to apply the informational modeling of correlation matrix developed by I.L. Myznikov in early 1990s in neurophysiological investigations, such as electroencephalogram recording and analysis, coherence description of signals from electrodes on the head surface. The authors demonstrate information models built using the data from studies of inert gas inhalation by healthy human subjects. In the opinion of the authors, information models provide an opportunity to describe physiological processes with a high level of generalization. The procedure of presenting the EEG results holds great promise for the broad application.

  10. An Enhanced Box-Wing Solar Radiation pressure model for BDS and initial results

    Science.gov (United States)

    Zhao, Qunhe; Wang, Xiaoya; Hu, Xiaogong; Guo, Rui; Shang, Lin; Tang, Chengpan; Shao, Fan

    2016-04-01

    Solar radiation pressure forces are the largest non-gravitational perturbations acting on GNSS satellites, which is difficult to be accurately modeled due to the complicated and changing satellite attitude and unknown surface material characteristics. By the end of 2015, there are more than 50 stations of the Multi-GNSS Experiment(MGEX) set-up by the IGS. The simple box-plate model relies on coarse assumptions about the dimensions and optical properties of the satellite due to lack of more detailed information. So, a physical model based on BOX-WING model is developed, which is more sophisticated and more detailed physical structure has been taken into account, then calculating pressure forces according to the geometric relations between light rays and surfaces. All the MGEX stations and IGS core stations had been processed for precise orbit determination tests with GPS and BDS observations. Calculation range covers all the two kinds of Eclipsing and non-eclipsing periods in 2015, and we adopted the un-differential observation mode and more accurate values of satellite phase centers. At first, we tried nine parameters model, and then eliminated the parameters with strong correlation between them, came into being five parameters of the model. Five parameters were estimated, such as solar scale, y-bias, three material coefficients of solar panel, x-axis and z-axis panels. Initial results showed that, in the period of yaw-steering mode, use of Enhanced ADBOXW model results in small improvement for IGSO and MEO satellites, and the Root-Mean-Square(RMS) error value of one-day arc orbit decreased by about 10%~30% except for C08 and C14. The new model mainly improved the along track acceleration, up to 30% while in the radial track was not obvious. The Satellite Laser Ranging(SLR) validation showed, however, that this model had higher prediction accuracy in the period of orbit-normal mode, compared to GFZ multi-GNSS orbit products, as well with relative post

  11. Comparison of multi-ħω shell-model results with MCAS

    Directory of Open Access Journals (Sweden)

    Svenne J. P.

    2014-03-01

    Full Text Available A multi-channel algebraic scattering (MCAS method has been used to obtain spectra of a number of light-mass nuclei, which are treated as a two-cluster system, here specifically a nucleon plus nucleus. To date, collective models have been used to specify the interactions between the nucleon and low-lying states of the nucleus that form the compound. For the case of the carbon isotopes, these studies have been complemented by sufficiently complex and complete shell-model calculations. Comparisons with the multi-ħω shell-model results provide new insights into the validity of those from MCAS.

  12. Spatial resolution effect on the simulated results of watershed scale models

    Science.gov (United States)

    Epelde, Ane; Antiguedad, Iñaki; Brito, David; Jauch, Eduardo; Neves, Ramiro; Sauvage, Sabine; Sánchez-Pérez, José Miguel

    2016-04-01

    Numerical models are useful tools for water resources planning, development and management. Currently, their use is being spread and more complex modeling systems are being employed for these purposes. The adding of complexity allows the simulation of water quality related processes. Nevertheless, this implies a considerable increase on the computational requirements, which usually is compensated on the models by a decrease on their spatial resolution. The spatial resolution of the models is known to affect the simulation of hydrological processes and therefore, also the nutrient exportation and cycling processes. However, the implication of the spatial resolution on the simulated results is rarely assessed. In this study, we examine the effect of the change in the grid size on the integrated and distributed results of the Alegria River watershed model (Basque Country, Northern Spain). Variables such as discharge, water table level, relative water content of soils, nitrogen exportation and denitrification are analyzed in order to quantify the uncertainty involved in the spatial discretization of the watershed scale models. This is an aspect that needs to be carefully considered when numerical models are employed in watershed management studies or quality programs.

  13. A mathematical model and simulation results of plasma enhanced chemical vapor deposition of silicon nitride films

    Science.gov (United States)

    Konakov, S. A.; Krzhizhanovskaya, V. V.

    2015-01-01

    We developed a mathematical model of Plasma Enhanced Chemical Vapor Deposition (PECVD) of silicon nitride thin films from SiH4-NH3-N2-Ar mixture, an important application in modern materials science. Our multiphysics model describes gas dynamics, chemical physics, plasma physics and electrodynamics. The PECVD technology is inherently multiscale, from macroscale processes in the chemical reactor to atomic-scale surface chemistry. Our macroscale model is based on Navier-Stokes equations for a transient laminar flow of a compressible chemically reacting gas mixture, together with the mass transfer and energy balance equations, Poisson equation for electric potential, electrons and ions balance equations. The chemical kinetics model includes 24 species and 58 reactions: 37 in the gas phase and 21 on the surface. A deposition model consists of three stages: adsorption to the surface, diffusion along the surface and embedding of products into the substrate. A new model has been validated on experimental results obtained with the "Plasmalab System 100" reactor. We present the mathematical model and simulation results investigating the influence of flow rate and source gas proportion on silicon nitride film growth rate and chemical composition.

  14. Method for evaluating prediction models that apply the results of randomized trials to individual patients

    Directory of Open Access Journals (Sweden)

    Kattan Michael W

    2007-06-01

    Full Text Available Abstract Introduction The clinical significance of a treatment effect demonstrated in a randomized trial is typically assessed by reference to differences in event rates at the group level. An alternative is to make individualized predictions for each patient based on a prediction model. This approach is growing in popularity, particularly for cancer. Despite its intuitive advantages, it remains plausible that some prediction models may do more harm than good. Here we present a novel method for determining whether predictions from a model should be used to apply the results of a randomized trial to individual patients, as opposed to using group level results. Methods We propose applying the prediction model to a data set from a randomized trial and examining the results of patients for whom the treatment arm recommended by a prediction model is congruent with allocation. These results are compared with the strategy of treating all patients through use of a net benefit function that incorporates both the number of patients treated and the outcome. We examined models developed using data sets regarding adjuvant chemotherapy for colorectal cancer and Dutasteride for benign prostatic hypertrophy. Results For adjuvant chemotherapy, we found that patients who would opt for chemotherapy even for small risk reductions, and, conversely, those who would require a very large risk reduction, would on average be harmed by using a prediction model; those with intermediate preferences would on average benefit by allowing such information to help their decision making. Use of prediction could, at worst, lead to the equivalent of an additional death or recurrence per 143 patients; at best it could lead to the equivalent of a reduction in the number of treatments of 25% without an increase in event rates. In the Dutasteride case, where the average benefit of treatment is more modest, there is a small benefit of prediction modelling, equivalent to a reduction of

  15. Proposed Schematics and Modeling Results for a Lunar Portable Life Support System

    Science.gov (United States)

    Conger, Bruce; Chullen, Cinda

    2009-01-01

    The Constellation Space Suit Element (CSSE) is an integrated assembly made up of primarily a Pressure Garment System (PGS) and a Portable Life Support System (PLSS). The PLSS is further composed of an oxygen (O2) subsystem, a ventilation subsystem, and a thermal subsystem. This paper baselines a detailed schematic of the CSSE PLSS to provide a basis for current and future CSSE PLSS development efforts. Both context diagrams and detailed schematics describe the hardware components and overall functions for all three of the PLSS subsystems. Additionally, PLSS functions are presented for multiple operational scenarios as follows: 1) Nominal Extravehicular Activity (EVA) Mode; 2) Umbilical Modes; a) No Recharge, b) With Recharge; 3) Decompression Sickness (DCS) Treatment Mode; 4) Buddy Mode; 5) Secondary O2 Modes; a) Helmet Purge; b) Suit Purge; c) Operational; and 5) PLSS Removed Umbilical Mode. A performance modeling effort is being performed to provide a preliminary confirmation of this layout and the current state of the thermal hydraulic modeling efforts being conducted for the PLSS is presented. The goal of these efforts is to provide realistic simulations of the PLSS under various modes of operation. Modeling approaches and assumptions are discussed as well as component model descriptions. Results from the models are included that show PLSS operations at steady-state and transient conditions. Finally, conclusions and recommendations are offered that summarize results, identify PLSS design weaknesses uncovered during review of the analysis results, and propose areas for improvement to increase model fidelity and accuracy.

  16. Modelled and Observed Diurnal SST Signals: "SSTDV:R.EX.-IM.A.M." Project Preliminary Results

    DEFF Research Database (Denmark)

    Karagali, Ioanna; Høyer, Jacob; LeBorgne, Pierre

    2013-01-01

    This study presents some of the preliminary results from the ESA Support To Science Element (STSE) funded project on the Diurnal Variability of the Sea Surface Temperature, regarding its Regional Extend and Implications in Atmospheric Modelling (SSTDV:R.EX.–IM.A.M.). During this phase...... of the project, the focus is on the regional extend of diurnal variability. Particularly, extensive sensitivity tests regarding the definition of SSTfound fields show that using only quality 5 SEVIRI data results in warmer foundation fields SSTfound while there is an added ∼0.2 K variability when using multi...... Ocean Turbulence Model (GOTM) is applied. Preliminary results show that the initial temperature profiles may give a warmer start-up in the model while the light extinction scheme is a controlling factor for the amplitude and vertical extend of the daily signal....

  17. Review on optical constants of Titan aerosols: Experimental results and modeling/observational data

    Science.gov (United States)

    Brassé, Coralie; Muñoz, Olga; Coll, Patrice; Raulin, François

    2014-05-01

    During the last years many studies have been performed to improve the experimental database of optical constants of Titan aerosols. Indeed, the determination of the optical constants of these particles is essential to quantify their capacity to absorb and to scatter solar radiation, and thus to evaluate their role on Titan's radiative balance and climate. The study of optical properties is also crucial to analyze and to better interpret many of Titan's observational data, in particular those acquired during the Cassini-Huygens mission. One way to determine Titan aerosols optical constant is to measure the optical constants of analogues of Titan complex organic material synthesized in the laboratory, usually named Titan's tholins (Sagan and Khare, 1979). But the optical constants depend on the chemical composition, the size and the shape of particles (Raulin et al., 2012). Those three parameters result from the experimental conditions such as energy source, gas mixing ratio, gas pressure, flow rate and irradiation time (Cable et al., 2012). Besides the determination of the refractive index in the laboratory, there are others methods using theoretical models or observational data. Nevertheless, theoretical models are based on laboratory data or/and observational data. The visible - near infrared spectral region of optical constants has been widely studied with laboratory analogues. Comparison of the obtained results suggest that tholins synthesized by Tran et al. (2003) and Majhoub et al. (2012) are the best representative of Titan aerosols with regards to their refractive indexes in this spectral region. The mid-infrared spectral range has been studied only by Imanaka et al. (2012) and slightly by Tran et al. (2003). In that spectral range, Titan tholins do not exhibit the features displayed by Kim and Courtin (2013) from Titan's observations. For spectral region of wavelengths smaller than 0.20µm or higher than 25µm, only the data from Khare et al. (1984) are

  18. Robustness of life cycle assessment results : influence of data variation and modelling choices on results for beverage packaging materials

    NARCIS (Netherlands)

    Harst-Wintraecken, van der E.J.M.

    2015-01-01

    Life cycle assessment (LCA) is a well-established method to evaluate the potential environmental impacts of product and service systems throughout their life cycles. However, it can happen that LCAs for the same product have different and even conflicting outcomes. LCA results need to be robust and

  19. Photospheric Current Spikes and Their Possible Association with Flares - Results from an HMI Data Driven Model

    Science.gov (United States)

    Goodman, Michael; Kwan, Chiman; Ayhan, Bulent; Shang, Eric L.

    2016-01-01

    A data driven, near photospheric magnetohydrodynamic model predicts spikes in the horizontal current density, and associated resistive heating rate per unit volume Q. The spikes appear as increases by orders of magnitude above background values in neutral line regions (NLRs) of active regions (ARs). The largest spikes typically occur a few hours to a few days prior to M or X flares. The spikes correspond to large vertical derivatives of the horizontal magnetic field. The model takes as input the photospheric magnetic field observed by the Helioseismic & Magnetic Imager (HMI) on the Solar Dynamics Observatory (SDO) satellite. This 2.5 D field is used to determine an analytic expression for a 3 D magnetic field, from which the current density, vector potential, and electric field are computed in every AR pixel for 14 ARs. The field is not assumed to be force-free. The spurious 6, 12, and 24 hour Doppler periods due to SDO orbital motion are filtered out of the time series of the HMI magnetic field for each pixel using a band pass filter. The subset of spikes analyzed at the pixel level are found to occur on HMI and granulation scales of 1 arcsec and 12 minutes. Spikes are found in ARs with and without M or X flares, and outside as well as inside NLRs, but the largest spikes are localized in the NLRs of ARs with M or X flares. The energy to drive the heating associated with the largest current spikes comes from bulk flow kinetic energy, not the electromagnetic field, and the current density is highly non-force free. The results suggest that, in combination with the model, HMI is revealing strong, convection driven, non-force free heating events on granulation scales, and that it is plausible these events are correlated with subsequent M or X flares. More and longer time series need to be analyzed to determine if such a correlation exists. Above an AR dependent threshold value of Q, the number of events N(Q) with heating rates greater than or equal to Q obeys a scale

  20. Action versus result-oriented schemes in a grassland agroecosystem: a dynamic modelling approach.

    Science.gov (United States)

    Sabatier, Rodolphe; Doyen, Luc; Tichit, Muriel

    2012-01-01

    Effects of agri-environment schemes (AES) on biodiversity remain controversial. While most AES are action-oriented, result-oriented and habitat-oriented schemes have recently been proposed as a solution to improve AES efficiency. The objective of this study was to compare action-oriented, habitat-oriented and result-oriented schemes in terms of ecological and productive performance as well as in terms of management flexibility. We developed a dynamic modelling approach based on the viable control framework to carry out a long term assessment of the three schemes in a grassland agroecosystem. The model explicitly links grazed grassland dynamics to bird population dynamics. It is applied to lapwing conservation in wet grasslands in France. We ran the model to assess the three AES scenarios. The model revealed the grazing strategies respecting ecological and productive constraints specific to each scheme. Grazing strategies were assessed by both their ecological and productive performance. The viable control approach made it possible to obtain the whole set of viable grazing strategies and therefore to quantify the management flexibility of the grassland agroecosystem. Our results showed that habitat and result-oriented scenarios led to much higher ecological performance than the action-oriented one. Differences in both ecological and productive performance between the habitat and result-oriented scenarios were limited. Flexibility of the grassland agroecosystem in the result-oriented scenario was much higher than in that of habitat-oriented scenario. Our model confirms the higher flexibility as well as the better ecological and productive performance of result-oriented schemes. A larger use of result-oriented schemes in conservation may also allow farmers to adapt their management to local conditions and to climatic variations.

  1. Action versus result-oriented schemes in a grassland agroecosystem: a dynamic modelling approach.

    Directory of Open Access Journals (Sweden)

    Rodolphe Sabatier

    Full Text Available Effects of agri-environment schemes (AES on biodiversity remain controversial. While most AES are action-oriented, result-oriented and habitat-oriented schemes have recently been proposed as a solution to improve AES efficiency. The objective of this study was to compare action-oriented, habitat-oriented and result-oriented schemes in terms of ecological and productive performance as well as in terms of management flexibility. We developed a dynamic modelling approach based on the viable control framework to carry out a long term assessment of the three schemes in a grassland agroecosystem. The model explicitly links grazed grassland dynamics to bird population dynamics. It is applied to lapwing conservation in wet grasslands in France. We ran the model to assess the three AES scenarios. The model revealed the grazing strategies respecting ecological and productive constraints specific to each scheme. Grazing strategies were assessed by both their ecological and productive performance. The viable control approach made it possible to obtain the whole set of viable grazing strategies and therefore to quantify the management flexibility of the grassland agroecosystem. Our results showed that habitat and result-oriented scenarios led to much higher ecological performance than the action-oriented one. Differences in both ecological and productive performance between the habitat and result-oriented scenarios were limited. Flexibility of the grassland agroecosystem in the result-oriented scenario was much higher than in that of habitat-oriented scenario. Our model confirms the higher flexibility as well as the better ecological and productive performance of result-oriented schemes. A larger use of result-oriented schemes in conservation may also allow farmers to adapt their management to local conditions and to climatic variations.

  2. The comparison of the results of numerical modeling and physical model experiment on laser polarization sensing of droplet clouds

    Science.gov (United States)

    Doroshkevich, A. A.; Bryukhanova, V. V.; Samokhvalov, I. V.; Stykon, A. P.

    2014-11-01

    The task of laser sensing of droplet clouds by coaxial lidar is considered. Lidar return due to single scattering is formed in the volume bounded by the radiation pattern of the transmitter, while the double-scattering is determined by a receiving system field of view. The volume of the scattering medium exceeding a receiving system field of view forms the signal higher scattering orders ( < 2). The results of the numerical modeling of the distribution (in the recording plane) polarization characteristics of lidar signal from droplet clouds in the double scattering approximation in comparison with the results of the physical model experiment simulating sounding of a droplet cloud are discussed in this paper.

  3. Lattice Hamiltonian approach to the Schwinger model. Further results from the strong coupling expansion

    Energy Technology Data Exchange (ETDEWEB)

    Szyniszewski, Marcin [Lancaster Univ. (United Kingdom). Dept. of Physics; Manchester Univ. (United Kingdom). NoWNano DTC; Cichy, Krzysztof [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC; Poznan Univ. (Poland). Faculty of Physics; Kujawa-Cichy, Agnieszka [Frankfurt Univ., Frankfurt am Main (Germany). Inst. fuer Theortische Physik

    2014-10-15

    We employ exact diagonalization with strong coupling expansion to the massless and massive Schwinger model. New results are presented for the ground state energy and scalar mass gap in the massless model, which improve the precision to nearly 10{sup -9}%. We also investigate the chiral condensate and compare our calculations to previous results available in the literature. Oscillations of the chiral condensate which are present while increasing the expansion order are also studied and are shown to be directly linked to the presence of flux loops in the system.

  4. Community study suggests segmentation strategies.

    Science.gov (United States)

    Gagnard, A

    1989-01-01

    Results of a sample survey commissioned by a voluntary health organization in a major metropolitan area describes why individuals give their time and money to charitable organizations and what approaches are likely to result in such donations. Within demographic subgroups, the variables of age and income proved to be important factors with respect to why people gave and what appeals they prefer. The variables of gender and education were found to be of somewhat less importance. Findings were compared with a national Gallup study conducted in 1987. In an era of increasingly specialized marketing for all organizations, the findings offer voluntary and fund-raising organizations a basis for determining appropriate appeals for demographic segments in a community.

  5. Application of a computationally efficient method to approximate gap model results with a probabilistic approach

    Science.gov (United States)

    Scherstjanoi, M.; Kaplan, J. O.; Lischke, H.

    2014-07-01

    To be able to simulate climate change effects on forest dynamics over the whole of Switzerland, we adapted the second-generation DGVM (dynamic global vegetation model) LPJ-GUESS (Lund-Potsdam-Jena General Ecosystem Simulator) to the Alpine environment. We modified model functions, tuned model parameters, and implemented new tree species to represent the potential natural vegetation of Alpine landscapes. Furthermore, we increased the computational efficiency of the model to enable area-covering simulations in a fine resolution (1 km) sufficient for the complex topography of the Alps, which resulted in more than 32 000 simulation grid cells. To this aim, we applied the recently developed method GAPPARD (approximating GAP model results with a Probabilistic Approach to account for stand Replacing Disturbances) (Scherstjanoi et al., 2013) to LPJ-GUESS. GAPPARD derives mean output values from a combination of simulation runs without disturbances and a patch age distribution defined by the disturbance frequency. With this computationally efficient method, which increased the model's speed by approximately the factor 8, we were able to faster detect the shortcomings of LPJ-GUESS functions and parameters. We used the adapted LPJ-GUESS together with GAPPARD to assess the influence of one climate change scenario on dynamics of tree species composition and biomass throughout the 21st century in Switzerland. To allow for comparison with the original model, we additionally simulated forest dynamics along a north-south transect through Switzerland. The results from this transect confirmed the high value of the GAPPARD method despite some limitations towards extreme climatic events. It allowed for the first time to obtain area-wide, detailed high-resolution LPJ-GUESS simulation results for a large part of the Alpine region.

  6. Martian aeolian features and deposits - Comparisons with general circulation model results

    Science.gov (United States)

    Greeley, Ronald; Skypeck, Andrew; Pollack, James B.

    1993-01-01

    The relationships between near-surface winds and the distribution of wind-related features are investigated by means of a general circulation model of Mars' atmosphere. Predictions of wind surface stress as a function of season and dust optical depth are used to investigate the distribution and orientation of wind streaks, yardangs, and rock abundance on the surface. The global distribution of rocks on the surface correlates well with predicted wind stress, particularly during the dust storm season. The rocky areas are sites of strong winds, suggesting that fine material is swept away by the wind, leaving rocks and coarser material behind.

  7. Preliminary results of Physiological plant growth modelling for human life support in space

    Science.gov (United States)

    Sasidharan L, Swathy; Dussap, Claude-Gilles; Hezard, Pauline

    2012-07-01

    physiological plant model, in the case of lettuce (since the leaf metabolic model predominates), the developed model was verified with the carbon consumption of plant, as input. The model predicts the biomass production (as output) with respect to the quantum of light absorbed by the plant. The obtained result was found satisfying for the first initiation in the physiological plant modelling.

  8. Hypnotizability, not suggestion, influences false memory development.

    Science.gov (United States)

    Dasse, Michelle N; Elkins, Gary R; Weaver, Charles A

    2015-01-01

    Hypnotizability influences the development of false memories. In Experiment 1, participants heard a positive or negative suggestion regarding hypnosis and then listened to 8 Deese-Roediger-McDermott (DRM) false memory paradigm lists in a hypnotic state. Neither hypnosis nor prehypnotic suggestion affected memory. Highly hypnotizable participants were more accurate in recall and recognition. In Experiment 2, suggestions were delivered in the form of feedback. Participants heard a positive or negative suggestion about their performance prior to either the encoding or retrieval of 8 DRM lists. Neither accurate nor false memories were affected by the suggestion. Highly hypnotizable individuals recognized fewer critical lures if they received a negative suggestion about their performance. These results highlight the unusual role of hypnotizability in the creation of false memories.

  9. Chemical reaction path modeling of hydrothermal processes on Mars: Preliminary results

    Science.gov (United States)

    Plumlee, Geoffrey S.; Ridley, W. Ian

    1992-01-01

    Hydrothermal processes are thought to have had significant roles in the development of surficial mineralogies and morphological features on Mars. For example, a significant proportion of the Martian soil could consist of the erosional products of hydrothermally altered impact melt sheets. In this model, impact-driven, vapor-dominated hydrothermal systems hydrothermally altered the surrounding rocks and transported volatiles such as S and Cl to the surface. Further support for impact-driven hydrothermal alteration on Mars was provided by studies of the Ries crater, Germany, where suevite deposits were extensively altered to montmorillonite clays by inferred low-temperature (100-130 C) hydrothermal fluids. It was also suggested that surface outflow from both impact-driven and volcano-driven hydrothermal systems could generate the valley networks, thereby eliminating the need for an early warm wet climate. We use computer-driven chemical reaction path calculation to model chemical processes which were likely associated with postulated Martian hydrothermal systems.

  10. Accessible integration of agriculture, groundwater, and economic models using the Open Modeling Interface (OpenMI: methodology and initial results

    Directory of Open Access Journals (Sweden)

    T. Bulatewicz

    2010-03-01

    Full Text Available Policy for water resources impacts not only hydrological processes, but the closely intertwined economic and social processes dependent on them. Understanding these process interactions across domains is an important step in establishing effective and sustainable policy. Multidisciplinary integrated models can provide insight to inform this understanding, though the extent of software development necessary is often prohibitive, particularly for small teams of researchers. Thus there is a need for practical methods for building interdisciplinary integrated models that do not incur a substantial development effort. In this work we adopt the strategy of linking individual domain models together to build a multidisciplinary integrated model. The software development effort is minimized through the reuse of existing models and existing model-linking tools without requiring any changes to the model source codes, and linking these components through the use of the Open Modeling Interface (OpenMI. This was found to be an effective approach to building an agricultural-groundwater-economic integrated model for studying the effects of water policy in irrigated agricultural systems. The construction of the integrated model provided a means to evaluate the impacts of two alternative water-use policies aimed at reducing irrigated water use to sustainable levels in the semi-arid grasslands overlying the Ogallala Aquifer of the Central US. The results show how both the economic impact in terms of yield and revenue and the environmental impact in terms of groundwater level vary spatially throughout the study region for each policy. Accessible integration strategies are necessary if the practice of interdisciplinary integrated simulation is to become widely adopted.

  11. Fed state prior to hemorrhagic shock and polytrauma in a porcine model results in altered liver transcriptomic response.

    Directory of Open Access Journals (Sweden)

    Charles Determan

    Full Text Available Hemorrhagic shock is a leading cause of trauma-related mortality in both civilian and military settings. Resuscitation often results in reperfusion injury and survivors are susceptible to developing multiple organ failure (MOF. The impact of fed state on the overall response to shock and resuscitation has been explored in some murine models but few clinically relevant large animal models. We have previously used metabolomics to establish that the fed state results in a different metabolic response in the porcine liver following hemorrhagic shock and resuscitation. In this study, we used our clinically relevant model of hemorrhagic shock and polytrauma and the Illumina HiSeq platform to determine if the liver transcriptomic response is also altered with respect to fed state. Functional analysis of the response to shock and resuscitation confirmed several typical responses including carbohydrate metabolism, cytokine inflammation, decreased cholesterol synthesis, and apoptosis. Our findings also suggest that the fasting state, relative to a carbohydrate prefed state, displays decreased carbohydrate metabolism, increased cytoskeleton reorganization and decreased inflammation in response to hemorrhagic shock and reperfusion. Evidence suggests that this is a consequence of a shrunken, catabolic state of the liver cells which provides an anti-inflammatory condition that partially mitigates hepatocellar damage.

  12.  Functional Results-Oriented Healthcare Leadership: A Novel Leadership Model

    Directory of Open Access Journals (Sweden)

    Salem Said Al-Touby

    2012-03-01

    Full Text Available  This article modifies the traditional functional leadership model to accommodate contemporary needs in healthcare leadership based on two findings. First, the article argues that it is important that the ideal healthcare leadership emphasizes the outcomes of the patient care more than processes and structures used to deliver such care; and secondly, that the leadership must strive to attain effectiveness of their care provision and not merely targeting the attractive option of efficient operations. Based on these premises, the paper reviews the traditional Functional Leadership Model and the three elements that define the type of leadership an organization has namely, the tasks, the individuals, and the team. The article argues that concentrating on any one of these elements is not ideal and proposes adding a new element to the model to construct a novel Functional Result-Oriented healthcare leadership model. The recommended Functional-Results Oriented leadership model embosses the results element on top of the other three elements so that every effort on healthcare leadership is directed towards attaining excellent patient outcomes.

  13. Conversion of IVA Human Computer Model to EVA Use and Evaluation and Comparison of the Result to Existing EVA Models

    Science.gov (United States)

    Hamilton, George S.; Williams, Jermaine C.

    1998-01-01

    This paper describes the methods, rationale, and comparative results of the conversion of an intravehicular (IVA) 3D human computer model (HCM) to extravehicular (EVA) use and compares the converted model to an existing model on another computer platform. The task of accurately modeling a spacesuited human figure in software is daunting: the suit restricts the human's joint range of motion (ROM) and does not have joints collocated with human joints. The modeling of the variety of materials needed to construct a space suit (e. g. metal bearings, rigid fiberglass torso, flexible cloth limbs and rubber coated gloves) attached to a human figure is currently out of reach of desktop computer hardware and software. Therefore a simplified approach was taken. The HCM's body parts were enlarged and the joint ROM was restricted to match the existing spacesuit model. This basic approach could be used to model other restrictive environments in industry such as chemical or fire protective clothing. In summary, the approach provides a moderate fidelity, usable tool which will run on current notebook computers.

  14. Latest results from the EU project AVATAR: Aerodynamic modelling of 10 MW wind turbines

    DEFF Research Database (Denmark)

    Schepers O. Ceyhan, J. G.; Boorsma, K.; Gonzalez, A.;

    2016-01-01

    This paper presents the most recent results from the EU project AVATAR in which aerodynamic models are improved and validated for wind turbines on a scale of 10 MW and more. Measurements on a DU 00-W-212 airfoil are presented which have been taken in the pressurized DNW-HDG wind tunnel up to a Re...... results from 3D rotor models where a comparison is made between results from vortex wake methods and BEM methods at yawed conditions....... showed an unexpected large scatter which eventually was reduced by paying even more attention to grid independency and domain size in relation to grid topology. Moreover calculations are presented on flow devices (leading and trailing edge flaps and vortex generators). Finally results are shown between...

  15. Developing Methodologies for Applying TRMM-Estimated Precipitation Data to Hydrological Modeling of a South TX Watershed - Initial Results

    Science.gov (United States)

    Tobin, K. J.; Bennett, M. E.

    2007-05-01

    Previous experience with hydrological modeling in South Texas, which is located along the Texas-Mexico border, suggests that NWS ground measurements are too widely scattered to provide reliable precipitation input for modeling. In addition, a significant fraction of the study region is located at the edge of the coverage envelopes of the NWS NEXRAD weather radars present in the region limiting the accuracy of these systems to provide reliable precipitation estimates. Therefore, we are exploring whether TRMM estimated-precipitation data (3B42), in some form, can be used to support hydrological modeling in the Middle Rio Grande and Nueces River Basin watersheds. We have begun our modeling efforts by focusing on the middle Nueces watershed (7770 sq km). To model this largely rural watershed we selected the Soil and Water Assessment Tool (SWAT). Three precipitation datasets were selected for our initial model runs that include: (1) nearest NWS cooperative hourly rain gauge data, (2) three hourly TRMM 3B42 estimated precipitation, and (3) combination TRMM 3B42/NWS rain gauge datasets in which ground measurements are used for three hourly periods lacking high quality satellite microwave precipitation estimates as determined from TRMM 3G68 data. Three dataset were aggregated into an average daily estimate of precipitation for each TRMM grid cell. Manual calibration of was completed achieving model results that yield realistic monthly and annual water balances with both gauge and satellite estimate precipitation datasets. In the future, we plan to use the newly developed automatic calibration routine for SWAT, which is based on the Shuffled Complex Evolution algorithm, to optimize modeled discharge results from this study.

  16. Evidence for Symplectic Symmetry in Ab Initio No-Core Shell Model Results for Light Nuclei

    Energy Technology Data Exchange (ETDEWEB)

    Dytrych, Tomas; Sviratcheva, Kristina D.; Bahri, Chairul; Draayer, Jerry P.; /Louisiana State U.; Vary, James P.; /Iowa State U. /LLNL, Livermore /SLAC

    2007-04-24

    Clear evidence for symplectic symmetry in low-lying states of {sup 12}C and {sup 16}O is reported. Eigenstates of {sup 12}C and {sup 16}O, determined within the framework of the no-core shell model using the JISP16 NN realistic interaction, typically project at the 85-90% level onto a few of the most deformed symplectic basis states that span only a small fraction of the full model space. The results are nearly independent of whether the bare or renormalized effective interactions are used in the analysis. The outcome confirms Elliott's SU(3) model which underpins the symplectic scheme, and above all, points to the relevance of a symplectic no-core shell model that can reproduce experimental B(E2) values without effective charges as well as deformed spatial modes associated with clustering phenomena in nuclei.

  17. Model unspecific search in CMS. Results at 8 TeV

    Energy Technology Data Exchange (ETDEWEB)

    Albert, Andreas; Duchardt, Deborah; Hebbeker, Thomas; Knutzen, Simon; Lieb, Jonas; Meyer, Arnd; Pook, Tobias; Roemer, Jonas [III. Physikalisches Institut A, RWTH Aachen University (Germany)

    2016-07-01

    In the year 2012, CMS collected a total data set of approximately 20 fb{sup -1} in proton-proton collisions at √(s)=8 TeV. Dedicated searches for physics beyond the standard model are commonly designed with the signatures of a given theoretical model in mind. While this approach allows for an optimised sensitivity to the sought-after signal, it may cause unexpected phenomena to be overlooked. In a complementary approach, the Model Unspecific Search in CMS (MUSiC) analyses CMS data in a general way. Depending on the reconstructed final state objects (e.g. electrons), collision events are sorted into classes. In each of the classes, the distributions of selected kinematic variables are compared to standard model simulation. An automated statistical analysis is performed to quantify the agreement between data and prediction. In this talk, the analysis concept is introduced and selected results of the analysis of the 2012 CMS data set are presented.

  18. Comparison of measurements and model results for airborne sulphur and nitrogen components with kriging

    Energy Technology Data Exchange (ETDEWEB)

    Schaug, J.; Iversen, T.; Pedersen, U. (Norwegian Institute for Air Research, Lillestroem (Norway). Chemical Coordinating Centre of EMEP)

    1993-04-01

    Comparisons have been made between calculations from the Lagrangian model for acid deposition at Meteorological Synthesizing Centre-West (MSC-W) of EMEP and measurements at EMEP sites. Annual averages of aerosol sulphate, sulphate in precipitation and nitrate in precipitation were calculated and compared for selected sites. Site selection was based on data completeness and on results from EMEP interlaboratory exercises. The comparison for sulphates in precipitation and air led to a model underestimation in the north and model overestimation in a belt through the major source regions in central Europe. The comparisons also indicate irregularities at some sites which may be due to influence from local sources, or the data quality, although this is not substantiated. The model estimates of nitrate in precipitation compare well with the measurements, although some characteristic differences occur also for this component. 21 refs., 11 figs., 2 tabs.

  19. Model On DROID Response With Imperfect Trapping Tested On Experimental Results

    Science.gov (United States)

    Hijmering, R. A.; Kozorezov, A. G.; Verhoeve, P.; Martin, D. D. E.; Wigmore, J. K.; Venn, R.

    2009-12-01

    The DROID (Distributed Read-Out Imaging Detector) is being developed to overcome the limitation in sensitive area with the use of single STJ's (Superconducting Tunnel Junctions). The DROID configuration allows the reconstruction of the position of the photon absorption and therefore it can replace a number of single STJ's in a detector array. We present a 2D model which describes the response of DROIDs with partial trapping in the STJs. The model describes diffusion of quasiparticles (qps) and imperfect confinement via exchange of qps between the absorber and STJ. It incorporates possible diffusion mismatch between absorber and STJ, possible asymmetry between the STJs as well as between the base and top electrodes of the STJs, and photon absorption in the absorber or base or top film of the STJ. Dedicated experiments have been conducted to test the different aspects of the model. We find a good agreement between the model and experimental results.

  20. Preliminary mixed-layer model results for FIRE marine stratocumulus IFO conditions

    Science.gov (United States)

    Barlow, R.; Nicholls, S.

    1990-01-01

    Some preliminary results from the Turton and Nicholls mixed layer model using typical FIRE boundary conditions are presented. The model includes entrainment and drizzle parametrizations as well as interactive long and shortwave radiation schemes. A constraint on the integrated turbulent kinetic energy balance ensures that the model remains energetically consistent at all times. The preliminary runs were used to identify the potentially important terms in the heat and moisture budgets of the cloud layer, and to assess the anticipated diurnal variability. These are compared with typical observations from the C130. Sensitivity studies also revealed the remarkable stability of these cloud sheets: a number of negative feedback mechanisms appear to operate to maintain the cloud over an extended time period. These are also discussed. The degree to which such a modelling approach can be used to explain observed features, the specification of boundary conditions and problems of interpretation in non-horizontally uniform conditions is also raised.

  1. Global Monthly CO2 Flux Inversion Based on Results of Terrestrial Ecosystem Modeling

    Science.gov (United States)

    Deng, F.; Chen, J.; Peters, W.; Krol, M.

    2008-12-01

    Most of our understanding of the sources and sinks of atmospheric CO2 has come from inverse studies of atmospheric CO2 concentration measurements. However, the number of currently available observation stations and our ability to simulate the diurnal planetary boundary layer evolution over continental regions essentially limit the number of regions that can be reliably inverted globally, especially over continental areas. In order to overcome these restrictions, a nested inverse modeling system was developed based on the Bayesian principle for estimating carbon fluxes of 30 regions in North America and 20 regions for the rest of the globe. Inverse modeling was conducted in monthly steps using CO2 concentration measurements of 5 years (2000 - 2005) with the following two models: (a) An atmospheric transport model (TM5) is used to generate the transport matrix where the diurnal variation n of atmospheric CO2 concentration is considered to enhance the use of the afternoon-hour average CO2 concentration measurements over the continental sites. (b) A process-based terrestrial ecosystem model (BEPS) is used to produce hourly step carbon fluxes, which could minimize the limitation due to our inability to solve the inverse problem in a high resolution, as the background of our inversion. We will present our recent results achieved through a combination of the bottom-up modeling with BEPS and the top-down modeling based on TM5 driven by offline meteorological fields generated by the European Centre for Medium Range Weather Forecast (ECMFW).

  2. The interface free energy: Comparison of accurate Monte Carlo results for the 3D Ising model with effective interface models

    CERN Document Server

    Caselle, Michele; Panero, Marco

    2007-01-01

    We provide accurate Monte Carlo results for the free energy of interfaces with periodic boundary conditions in the 3D Ising model. We study a large range of inverse temperatures, allowing to control corrections to scaling. In addition to square interfaces, we study rectangular interfaces for a large range of aspect ratios u=L_1/L_2. Our numerical results are compared with predictions of effective interface models. This comparison verifies clearly the effective Nambu-Goto model up to two-loop order. Our data also allow us to obtain the estimates T_c sigma^-1/2=1.235(2), m_0++ sigma^-1/2=3.037(16) and R_+=f_+ sigma_0^2 =0.387(2), which are more precise than previous ones.

  3. Suggestions for Implementing Flipped Classroom in China

    Institute of Scientific and Technical Information of China (English)

    周婷

    2016-01-01

    Educators in the twenty-first century are constantly adopting new technologies and pedagogies. Flipped Classroom Model is one of the most promising approaches to transforming learning experiences, which has been applied to both K-12 edu-cation and higher education at home and abroad. Influenced by culture and learning styles, the effectiveness and concrete imple-mentation strategies of this teaching model is different in different countries. How to localize the model in China is an important question for educators to think about. The paper makes suggestions for implementing Flipped Classroom in China, aiming at helping teachers to flip their classrooms successfully.

  4. Simulating the mid-Pliocene climate with the MIROC general circulation model: experimental design and initial results

    Directory of Open Access Journals (Sweden)

    W.-L. Chan

    2011-11-01

    Full Text Available Recently, PlioMIP (Pliocene Model Intercomparison Project was established to assess the ability of various climate models to simulate the mid-Pliocene warm period (mPWP, 3.3–3.0 million years ago. We use MIROC4m, a fully coupled atmosphere-ocean general circulation model (AOGCM, and its atmospheric component alone to simulate the mPWP, utilizing up-to-date data sets designated in PlioMIP as boundary conditions and adhering to the protocols outlined. In this paper, a brief description of the model is given, followed by an explanation of the experimental design and implementation of the boundary conditions, such as topography and sea surface temperature. Initial results show increases of approximately 10°C in the zonal mean surface air temperature at high latitudes accompanied by a decrease in the equator-to-pole temperature gradient. Temperatures in the tropical regions increase more in the AOGCM. However, warming of the AOGCM sea surface in parts of the northern North Atlantic Ocean and Nordic Seas is less than that suggested by proxy data. An investigation of the model-data discrepancies and further model intercomparison studies can lead to a better understanding of the mid-Pliocene climate and of its role in assessing future climate change.

  5. Comparison of results of experimental research with numerical calculations of a model one-sided seal

    Directory of Open Access Journals (Sweden)

    Joachimiak Damian

    2015-06-01

    Full Text Available Paper presents the results of experimental and numerical research of a model segment of a labyrinth seal for a different wear level. The analysis covers the extent of leakage and distribution of static pressure in the seal chambers and the planes upstream and downstream of the segment. The measurement data have been compared with the results of numerical calculations obtained using commercial software. Based on the flow conditions occurring in the area subjected to calculations, the size of the mesh defined by parameter y+ has been analyzed and the selection of the turbulence model has been described. The numerical calculations were based on the measurable thermodynamic parameters in the seal segments of steam turbines. The work contains a comparison of the mass flow and distribution of static pressure in the seal chambers obtained during the measurement and calculated numerically in a model segment of the seal of different level of wear.

  6. Comparative Results on 3D Navigation of Quadrotor using two Nonlinear Model based Controllers

    Science.gov (United States)

    Bouzid, Y.; Siguerdidjane, H.; Bestaoui, Y.

    2017-01-01

    Recently the quadrotors are being increasingly employed in both military and civilian areas where a broad range of nonlinear flight control techniques are successfully implemented. With this advancement, it has become necessary to investigate the efficiency of these flight controllers by studying theirs features and compare their performance. In this paper, the control of Unmanned Aerial Vehicle (UAV) quadrotor, using two different approaches, is presented. The first controller is Nonlinear PID (NLPID) whilst the second one is Nonlinear Internal Model Control (NLIMC) that are used for the stabilization as well as for the 3D trajectory tracking. The numerical simulations have shown satisfactory results using nominal system model or disturbed model for both of them. The obtained results are analyzed with respect to several criteria for the sake of comparison.

  7. The Witten-Sakai-Sugimoto model: A brief review and some recent results

    Directory of Open Access Journals (Sweden)

    Rebhan Anton

    2015-01-01

    Full Text Available A brief review of the Witten-Sakai-Sugimoto model is given, which is a top-down holographic model of low-energy QCD with chiral quarks derived from type-IIA superstring theory. The main predictions of the model, in particular concerning meson spectra, the gluon condensate, the QCD string tension, the mass of the η′ and of baryons are discussed and compared quantitatively with available experimental and/or lattice results. Then some recent results of potential interest to the physics program at the future FAIR facility are presented: The spectrum of glueballs and their decay rates into pions, and the phase diagram of QCD at finite temperature, density, and magnetic field strength.

  8. Extending positive C-LASS results across multiple instructors and multiple classes of Modeling Instruction

    CERN Document Server

    Brewe, Eric; de la Garza, Jorge; Kramer, Laird H

    2013-01-01

    We report on a multi year study of student attitudes measured with the Colorado Learning Attitudes about Science Survey (C-LASS) in calculus-based introductory physics taught with the Modeling Instruction curriculum. We find that five of six instructors and eight of nine sections using Modeling Instruction showed improved attitudes from pre to post course. Cohen's d effect sizes range from 0.08 to 0.95 for individual instructors. The average effect was d = 0.45, with a 95% confidence interval of (0.26 to 0.64). These results build on previously published results showing positive shifts in attitudes from Modeling Instruction classes. We interpret these data in light of other published positive attitudinal shifts and explore mechanistic explanations for similarities and differences with other published positive shifts.

  9. Influence of Different Modeling Strategies for CFRP on Finite Element Simulation Results

    Directory of Open Access Journals (Sweden)

    Liu Xueshu

    2016-01-01

    Full Text Available Numerical simulation is used to predict the behavior and response of carbon fiber reinforced plastic (CFRP. Sometimes zero thickness of interface layer is introduced into the numerical model to investigate the inter-layer behavior like delamination. To investigate the influence of critical volume-type defect like void, usually appeared in matrix rich region at the interface between layers, on mechanical properties of CFRP, numerical models with different interface thickness were created and tensile property and three-point bending simulation results were compared to experimental ones. It is found that accurate result is obtained with increasing of the interface thickness and up to 20% that of layer thickness is recommended to model the matrix rich region.

  10. Model Parameter Estimation Experiment (MOPEX): Overview and Summary of the Second and Third Workshop Results

    Energy Technology Data Exchange (ETDEWEB)

    Duan, Q; Schaake, J; Andreassian, V; Franks, S; Gupta, H V; Gusev, Y M; Habets, F; Hall, A; Hay, L; Hogue, T; Huang, M; Leavesley, G; Liang, X; Nasonova, O N; Noilhan, J; Oudin, L; Sorooshian, S; Wagener, T; Wood, E F

    2005-02-10

    Model Parameter Estimation Experiment (MOPEX) is an international project aimed to develop enhanced techniques for the a priori estimation of parameters in hydrologic models and in land surface parameterization schemes of atmospheric models. MOPEX science strategy involves three major steps: data preparation, a priori parameter estimation methodology development, and demonstration of parameter transferability. A comprehensive MOPEX database has been developed that contains historical hydrometeorological data and land surface characteristics data for many hydrologic basins in the United States and in other countries. This database is continuing to be expanded to include more basins in all parts of the world. A number of international MOPEX workshops have been convened to bring together interested hydrologists and land surface modelers from all over world to exchange knowledge and experience in developing a priori parameter estimation techniques. This paper describes the results from the second and third MOPEX workshops. The specific objective of those workshops is to examine the state of a priori parameter estimation techniques and how they can be potentially improved with observations from well-monitored hydrologic basins. Participants of these MOPEX workshops were given data for 12 basins in the Southeastern United States and were asked to carry out a series of numerical experiments using a priori parameters as well as calibrated parameters developed for their respective hydrologic models. Eight different models have carried all out the required numerical experiments and the results from those models have been assembled for analysis in this paper. This paper presents an overview of the MOPEX experiment design. The experimental results are analyzed and the important lessons from the two workshops are discussed. Finally, a discussion of further work and future strategy is given.

  11. Results of an interactively coupled atmospheric chemistry - general circulation model. Comparison with observations

    Energy Technology Data Exchange (ETDEWEB)

    Hein, R.; Dameris, M.; Schnadt, C. [and others

    2000-01-01

    An interactively coupled climate-chemistry model which enables a simultaneous treatment of meteorology and atmospheric chemistry and their feedbacks is presented. This is the first model, which interactively combines a general circulation model based on primitive equations with a rather complex model of stratospheric and tropospheric chemistry, and which is computational efficient enough to allow long-term integrations with currently available computer resources. The applied model version extends from the Earth's surface up to 10 hPa with a relatively high number (39) of vertical levels. We present the results of a present-day (1990) simulation and compare it to available observations. We focus on stratospheric dynamics and chemistry relevant to describe the stratospheric ozone layer. The current model version ECHAM4.L39(DLR)/CHEM can realistically reproduce stratospheric dynamics in the Arctic vortex region, including stratospheric warming events. This constitutes a major improvement compared to formerly applied model versions. However, apparent shortcomings in Antarctic circulation and temperatures persist. The seasonal and interannual variability of the ozone layer is simulated in accordance with observations. Activation and deactivation of chlorine in the polar stratospheric vortices and their interhemispheric differences are reproduced. The consideration of the chemistry feedback on dynamics results in an improved representation of the spatial distribution of stratospheric water vapor concentrations, i.e., the simulated meriodional water vapor gradient in the stratosphere is realistic. The present model version constitutes a powerful tool to investigate, for instance, the combined direct and indirect effects of anthropogenic trace gas emissions, and the future evolution of the ozone layer. (orig.)

  12. Results of an interactively coupled atmospheric chemistry - general circulation model. Comparison with observations

    Energy Technology Data Exchange (ETDEWEB)

    Hein, R.; Dameris, M.; Schnadt, C. [and others

    2000-01-01

    An interactively coupled climate-chemistry model which enables a simultaneous treatment of meteorology and atmospheric chemistry and their feedbacks is presented. This is the first model, which interactively combines a general circulation model based on primitive equations with a rather complex model of stratospheric and tropospheric chemistry, and which is computational efficient enough to allow long-term integrations with currently available computer resources. The applied model version extends from the Earth's surface up to 10 hPa with a relatively high number (39) of vertical levels. We present the results of a present-day (1990) simulation and compare it to available observations. We focus on stratospheric dynamics and chemistry relevant to describe the stratospheric ozone layer. The current model version ECHAM4.L39(DLR)/CHEM can realistically reproduce stratospheric dynamics in the Arctic vortex region, including stratospheric warming events. This constitutes a major improvement compared to formerly applied model versions. However, apparent shortcomings in Antarctic circulation and temperatures persist. The seasonal and interannual variability of the ozone layer is simulated in accordance with observations. Activation and deactivation of chlorine in the polar stratospheric vortices and their interhemispheric differences are reproduced. The consideration of the chemistry feedback on dynamics results in an improved representation of the spatial distribution of stratospheric water vapor concentrations, i.e., the simulated meriodional water vapor gradient in the stratosphere is realistic. The present model version constitutes a powerful tool to investigate, for instance, the combined direct and indirect effects of anthropogenic trace gas emissions, and the future evolution of the ozone layer. (orig.)

  13. Optimal Geoid Modelling to determine the Mean Ocean Circulation - Project Overview and early Results

    Science.gov (United States)

    Fecher, Thomas; Knudsen, Per; Bettadpur, Srinivas; Gruber, Thomas; Maximenko, Nikolai; Pie, Nadege; Siegismund, Frank; Stammer, Detlef

    2017-04-01

    The ESA project GOCE-OGMOC (Optimal Geoid Modelling based on GOCE and GRACE third-party mission data and merging with altimetric sea surface data to optimally determine Ocean Circulation) examines the influence of the satellite missions GRACE and in particular GOCE in ocean modelling applications. The project goal is an improved processing of satellite and ground data for the preparation and combination of gravity and altimetry data on the way to an optimal MDT solution. Explicitly, the two main objectives are (i) to enhance the GRACE error modelling and optimally combine GOCE and GRACE [and optionally terrestrial/altimetric data] and (ii) to integrate the optimal Earth gravity field model with MSS and drifter information to derive a state-of-the art MDT including an error assessment. The main work packages referring to (i) are the characterization of geoid model errors, the identification of GRACE error sources, the revision of GRACE error models, the optimization of weighting schemes for the participating data sets and finally the estimation of an optimally combined gravity field model. In this context, also the leakage of terrestrial data into coastal regions shall be investigated, as leakage is not only a problem for the gravity field model itself, but is also mirrored in a derived MDT solution. Related to (ii) the tasks are the revision of MSS error covariances, the assessment of the mean circulation using drifter data sets and the computation of an optimal geodetic MDT as well as a so called state-of-the-art MDT, which combines the geodetic MDT with drifter mean circulation data. This paper presents an overview over the project results with focus on the geodetic results part.

  14. Impact of head models in N170 component source imaging: results in control subjects and ADHD patients

    Science.gov (United States)

    Beltrachini, L.; Blenkmann, A.; von Ellenrieder, N.; Petroni, A.; Urquina, H.; Manes, F.; Ibáñez, A.; Muravchik, C. H.

    2011-12-01

    The major goal of evoked related potential studies arise in source localization techniques to identify the loci of neural activity that give rise to a particular voltage distribution measured on the surface of the scalp. In this paper we evaluate the effect of the head model adopted in order to estimate the N170 component source in attention deficit hyperactivity disorder (ADHD) patients and control subjects, considering faces and words stimuli. The standardized low resolution brain electromagnetic tomography algorithm (sLORETA) is used to compare between the three shell spherical head model and a fully realistic model based on the ICBM-152 atlas. We compare their variance on source estimation and analyze the impact on the N170 source localization. Results show that the often used three shell spherical model may lead to erroneous solutions, specially on ADHD patients, so its use is not recommended. Our results also suggest that N170 sources are mainly located in the right occipital fusiform gyrus for faces stimuli and in the left occipital fusiform gyrus for words stimuli, for both control subjects and ADHD patients. We also found a notable decrease on the N170 estimated source amplitude on ADHD patients, resulting in a plausible marker of the disease.

  15. Polarized antiquark distributions from chiral quark-soliton model summary of the results

    CERN Document Server

    Göke, K; Polyakov, M V; Urbano, D

    2000-01-01

    In these short notes we present a parametrization of the results obtained in the chiral quark-soliton model for polarized antiquark distributions $\\Delta\\bar u$, $\\Delta\\bar d$ and $\\Delta\\bar s$ at a low normalization point around mu=0.6 GeV.

  16. Social approval of the community assessment model for odor dispersal: results from a citizen survey.

    Science.gov (United States)

    Tyndall, John C; Grudens-Schuck, Nancy; Harmon, Jay D; Hoff, Steve J

    2012-08-01

    Odors emitted from US Midwest hog production facilities present farmers, residents, and state regulatory agencies with a set of complex challenges. To predict odor exposure from multiple swine production sources simultaneously, and to determine siting recommendations for proposed new or enlarged hog facilities, researchers at Iowa State University designed the community assessment model for odor dispersion (CAM). A three-county citizen survey conducted in Iowa examined the level of hypothetical social acceptance of the modeling process, and level of trust in CAM results. While 69 % of respondents approved of modeling as a way to determine the most socially appropriate location for production sites, only 35 % would trust the results if potential odor exposure from a new facility were proposed to be built near their home. We analyzed approval of the CAM model, and level of trust, across a number of demographic, attitudinal, and belief factors regarding environmental quality and the hog industry. Overall, trust in CAM was uneven and varied across respondents. Those residents who would not trust CAM tended to be more concerned with environmental quality and less inclined to believe that the hog industry is critically important economically. Those who would not trust CAM results also had significantly more direct experience with odors. Findings point to predominantly positive, yet equivocal acceptance of CAM results among the citizenry, which is not unexpected given conflict typical of siting decisions in industry and waste disposal arenas. Recommendations are offered regarding the interaction of trust, beliefs and attitudes and the utility of CAM.

  17. Modeling of contact mechanics and friction limit surfaces for soft fingers in robotics, with experimental results

    Energy Technology Data