Effect of glycyrrhetinic acid on lipid raft model at the air/water interface.

Science.gov (United States)

Sakamoto, Seiichi; Uto, Takuhiro; Shoyama, Yukihiro

2015-02-01

To investigate an interfacial behavior of the aglycon of glycyrrhizin (GC), glycyrrhetinic acid (GA), with a lipid raft model consisting of equimolar ternary mixtures of N-palmitoyl sphingomyelin (PSM), dioleoylphosphatidylcholine (DOPC), and cholesterol (CHOL), Langmuir monolayer techniques were systematically conducted. Surface pressure (π)-molecular area (A) and surface potential (ΔV)-A isotherms showed that the adsorbed GA at the air/water interface was desorbed into the bulk upon compression of the lipid monolayer. In situ morphological analysis by Brewster angle microscopy and fluorescence microscopy revealed that the raft domains became smaller as the concentrations of GA in the subphase (CGA) increased, suggesting that GA promotes the formation of fluid networks related to various cellular processes via lipid rafts. In addition, ex situ morphological analysis by atomic force microscopy revealed that GA interacts with lipid raft by lying down at the surface. Interestingly, the distinctive striped regions were formed at CGA=5.0 μM. This phenomenon was observed to be induced by the interaction of CHOL with adsorbed GA and is involved in the membrane-disrupting activity of saponin and its aglycon. A quantitative comparison of GA with GC (Sakamoto et al., 2013) revealed that GA interacts more strongly with the raft model than GC in the monolayer state. Various biological activities of GA are known to be stronger than those of GC. This fact allows us to hypothesize that differences in the interactions of GA/GC with the model monolayer correlate to their degree of exertion for numerous activities. Copyright © 2014 Elsevier B.V. All rights reserved.

Altered dynamics of a lipid raft associated protein in a kidney model of Fabry disease.

Science.gov (United States)

Labilloy, Anatália; Youker, Robert T; Bruns, Jennifer R; Kukic, Ira; Kiselyov, Kirill; Halfter, Willi; Finegold, David; do Monte, Semiramis Jamil Hadad; Weisz, Ora A

2014-02-01

Accumulation of globotriaosylceramide (Gb3) and other neutral glycosphingolipids with galactosyl residues is the hallmark of Fabry disease, a lysosomal storage disorder caused by deficiency of the enzyme alpha-galactosidase A (α-gal A). These lipids are incorporated into the plasma membrane and intracellular membranes, with a preference for lipid rafts. Disruption of raft mediated cell processes is implicated in the pathogenesis of several human diseases, but little is known about the effects of the accumulation of glycosphingolipids on raft dynamics in the context of Fabry disease. Using siRNA technology, we have generated a polarized renal epithelial cell model of Fabry disease in Madin-Darby canine kidney cells. These cells present increased levels of Gb3 and enlarged lysosomes, and progressively accumulate zebra bodies. The polarized delivery of both raft-associated and raft-independent proteins was unaffected by α-gal A knockdown, suggesting that accumulation of Gb3 does not disrupt biosynthetic trafficking pathways. To assess the effect of α-gal A silencing on lipid raft dynamics, we employed number and brightness (N&B) analysis to measure the oligomeric status and mobility of the model glycosylphosphatidylinositol (GPI)-anchored protein GFP-GPI. We observed a significant increase in the oligomeric size of antibody-induced clusters of GFP-GPI at the plasma membrane of α-gal A silenced cells compared with control cells. Our results suggest that the interaction of GFP-GPI with lipid rafts may be altered in the presence of accumulated Gb3. The implications of our results with respect to the pathogenesis of Fabry disease are discussed. © 2013 Elsevier Inc. All rights reserved.

Wrinkles, folds, and plasticity in granular rafts

Science.gov (United States)

Jambon-Puillet, Etienne; Josserand, Christophe; Protière, Suzie

2017-09-01

We investigate the mechanical response of a compressed monolayer of large and dense particles at a liquid-fluid interface: a granular raft. Upon compression, rafts first wrinkle; then, as the confinement increases, the deformation localizes in a unique fold. This characteristic buckling pattern is usually associated with floating elastic sheets, and as a result, particle laden interfaces are often modeled as such. Here, we push this analogy to its limits by comparing quantitative measurements of the raft morphology to a theoretical continuous elastic model of the interface. We show that, although powerful to describe the wrinkle wavelength, the wrinkle-to-fold transition, and the fold shape, this elastic description does not capture the finer details of the experiment. We describe an unpredicted secondary wavelength, a compression discrepancy with the model, and a hysteretic behavior during compression cycles, all of which are a signature of the intrinsic discrete and frictional nature of granular rafts. It suggests also that these composite materials exhibit both plastic transition and jamming dynamics.

Generation of stable lipid raft microdomains in the enterocyte brush border by selective endocytic removal of non-raft membrane

DEFF Research Database (Denmark)

Danielsen, E Michael; Hansen, Gert H

2013-01-01

The small intestinal brush border has an unusually high proportion of glycolipids which promote the formation of lipid raft microdomains, stabilized by various cross-linking lectins. This unique membrane organization acts to provide physical and chemical stability to the membrane that faces...... functions to enrich the contents of lipid raft components in the brush border. The lipophilic fluorescent marker FM, taken up into early endosomes in the terminal web region (TWEEs), was absent from detergent resistant membranes (DRMs), implying an association with non-raft membrane. Furthermore, neither...... major lipid raft-associated brush border enzymes nor glycolipids were detected by immunofluorescence microscopy in subapical punctae resembling TWEEs. Finally, two model raft lipids, BODIPY-lactosylceramide and BODIPY-GM1, were not endocytosed except when cholera toxin subunit B (CTB) was present...

Compartmentalized cAMP Signaling Associated With Lipid Raft and Non-raft Membrane Domains in Adult Ventricular Myocytes.

Science.gov (United States)

Agarwal, Shailesh R; Gratwohl, Jackson; Cozad, Mia; Yang, Pei-Chi; Clancy, Colleen E; Harvey, Robert D

2018-01-01

Aim: Confining cAMP production to discrete subcellular locations makes it possible for this ubiquitous second messenger to elicit unique functional responses. Yet, factors that determine how and where the production of this diffusible signaling molecule occurs are incompletely understood. The fluid mosaic model originally proposed that signal transduction occurs through random interactions between proteins diffusing freely throughout the plasma membrane. However, it is now known that the movement of membrane proteins is restricted, suggesting that the plasma membrane is segregated into distinct microdomains where different signaling proteins can be concentrated. In this study, we examined what role lipid raft and non-raft membrane domains play in compartmentation of cAMP signaling in adult ventricular myocytes. Methods and Results: The freely diffusible fluorescence resonance energy transfer-based biosensor Epac2-camps was used to measure global cytosolic cAMP responses, while versions of the probe targeted to lipid raft (Epac2-MyrPalm) and non-raft (Epac2-CAAX) domains were used to monitor local cAMP production near the plasma membrane. We found that β-adrenergic receptors, which are expressed in lipid raft and non-raft domains, produce cAMP responses near the plasma membrane that are distinctly different from those produced by E-type prostaglandin receptors, which are expressed exclusively in non-raft domains. We also found that there are differences in basal cAMP levels associated with lipid raft and non-raft domains, and that this can be explained by differences in basal adenylyl cyclase activity associated with each of these membrane environments. In addition, we found evidence that phosphodiesterases 2, 3, and 4 work together in regulating cAMP activity associated with both lipid raft and non-raft domains, while phosphodiesterase 3 plays a more prominent role in the bulk cytoplasmic compartment. Conclusion: These results suggest that different membrane

Lipid composition of membrane rafts, isolated with and without detergent, from the spleen of a mouse model of Gaucher disease.

Science.gov (United States)

Hattersley, Kathryn J; Hein, Leanne K; Fuller, Maria

2013-12-06

Biological membranes are composed of functionally relevant liquid-ordered and liquid-disordered domains that coexist. Within the liquid-ordered domains are low-density microdomains known as rafts with a unique lipid composition that is crucial for their structure and function. Lipid raft composition is altered in sphingolipid storage disorders, and here we determined the lipid composition using a detergent and detergent-free method in spleen tissue, the primary site of pathology, in a mouse model of the sphingolipid storage disorder, Gaucher disease. The accumulating lipid, glucosylceramide, was 30- and 50-fold elevated in the rafts with the detergent and detergent-free method, respectively. Secondary accumulation of di- and trihexosylceramide resided primarily in the rafts with both methods. The phospholipids distributed differently with more than half residing in the rafts with the detergent-free method and less than 10% with the detergent method, with the exception of the fully saturated species that were primarily in the rafts. Individual isoforms of sphingomyelin correlated with detergent-free extraction and more than half resided in the raft fractions. However, this correlation was not seen with the detergent extraction method as sphingomyelin species were spread across both the raft and non-raft domains. Therefore caution must be exercised when interpreting phospholipid distribution in raft domains as it differs considerably depending on the method of isolation. Importantly, both methods revealed the same lipid alterations in the raft domains in the spleen of the Gaucher disease mouse model highlighting that either method is appropriate to determine membrane lipid changes in the diseased state. Copyright © 2013 Elsevier Inc. All rights reserved.

Na/K-ATPase regulates bovine sperm capacitation through raft- and non-raft-mediated signaling mechanisms.

Science.gov (United States)

Rajamanickam, Gayathri D; Kastelic, John P; Thundathil, Jacob C

2017-11-01

Highly dynamic lipid microdomains (rafts) in the sperm plasma membrane contain several signaling proteins that regulate sperm capacitation. Na/K-ATPase isoforms (testis-specific isoform ATP1A4 and ubiquitous isoform ATP1A1) are abundant in bovine sperm plasma membrane. We previously reported that incubation of bovine sperm with ouabain, a specific Na/K-ATPase ligand, induced tyrosine phosphorylation of several sperm proteins during capacitation. The objective of this study was to investigate the roles of lipid rafts and non-rafts in Na/K-ATPase enzyme activity and signaling during bovine sperm capacitation. Content of ATP1A4 and, to a lesser extent, ATP1A1 was increased in raft and non-raft fractions of capacitated sperm, although non-raft enzyme activities of both isoforms were higher than the corresponding activities in rafts from capacitated sperm. Yet, ATP1A4 was the predominant isoform responsible for total Na/K-ATPase activity in both rafts and non-rafts. A comparative increase in phosphorylation of signaling molecules was observed in both raft (CAV1) and non-raft (EGFR and ERK1/2) membrane fractions during capacitation. Although SRC was phosphorylated in both membrane fractions, the non-raft fraction possessed more of this activated form. We also inferred, by immunoprecipitation, that ATP1A4 interacted with CAV1 and EGFR in the raft fraction, whereas interactions of ATP1A4 with SRC, EGFR, and ERK1/2 occurred in the non-raft fraction of ouabain-capacitated sperm; conversely, ATP1A1 interacted only with CAV1 in both fractions of uncapacitated and capacitated sperm. In conclusion, both raft and non-raft cohorts of Na/K-ATPase isoforms contributed to phosphorylation of signaling molecules during bovine sperm capacitation. © 2017 Wiley Periodicals, Inc.

Life raft stabilizer

Science.gov (United States)

Radnofsky, M. I.; Barnett, J. H., Jr.; Harrison, F. L.; Marak, R. J. (Inventor)

1973-01-01

An improved life raft stabilizer for reducing rocking and substantially precluding capsizing is discussed. The stabilizer may be removably attached to the raft and is defined by flexible side walls which extend a considerable depth downwardly to one another in the water. The side walls, in conjunction with the floor of the raft, form a ballast enclosure. A weight is placed in the bottom of the enclosure and water port means are provided in the walls. Placement of the stabilizer in the water allows the weighted bottom to sink, producing submerged deployment thereof and permitting water to enter the enclosure through the port means, thus forming a ballast for the raft.

Modelling snow ice and superimposed ice on landfast sea ice in Kongsfjorden, Svalbard

Directory of Open Access Journals (Sweden)

Caixin Wang

2015-08-01

Full Text Available Snow ice and superimposed ice formation on landfast sea ice in a Svalbard fjord, Kongsfjorden, was investigated with a high-resolution thermodynamic snow and sea-ice model, applying meteorological weather station data as external forcing. The model shows that sea-ice formation occurs both at the ice bottom and at the snow/ice interface. Modelling results indicated that the total snow ice and superimposed ice, which formed at the snow/ice interface, was about 14 cm during the simulation period, accounting for about 15% of the total ice mass and 35% of the total ice growth. Introducing a time-dependent snow density improved the modelled results, and a time-dependent oceanic heat flux parameterization yielded reasonable ice growth at the ice bottom. Model results suggest that weather conditions, in particular air temperature and precipitation, as well as snow thermal properties and surface albedo are the most critical factors for the development of snow ice and superimposed ice in Kongsfjorden. While both warming air and higher precipitation led to increased snow ice and superimposed ice forming in Kongsfjorden in the model runs, the processes were more sensitive to precipitation than to air temperature.

A comparative study on the raft chemical properties of various alginate antacid raft-forming products.

Science.gov (United States)

Dettmar, Peter W; Gil-Gonzalez, Diana; Fisher, Jeanine; Flint, Lucy; Rainforth, Daniel; Moreno-Herrera, Antonio; Potts, Mark

2018-01-01

Research to measure the chemical characterization of alginate rafts for good raft performance and ascertain how formulation can affect chemical parameters. A selection of alginate formulations was investigated all claiming to be proficient raft formers with significance between products established and ranked. Procedures were selected which demonstrated the chemical characterization allowing rafts to effectively impede the reflux into the esophagus or in severe cases to be refluxed preferentially into the esophagus and exert a demulcent effect, with focus of current research on methods which complement previous studies centered on physical properties. The alginate content was analyzed by a newly developed HPLC method. Methods were used to determine the neutralization profile and the acid neutralization within the raft determined along with how raft structure affects neutralization. Alginate content of Gaviscon Double Action (GDA) within the raft was significantly superior (p raft acid neutralization capacity were GDA and Rennie Duo, the latter product not being a raft former. Raft structure was key and GDA had the right level of porosity to allow for longer duration of neutralization. Alginate formulations require three chemical reactions to take place simultaneously: transformation to alginic acid, sodium carbonate reacting to form carbon dioxide, calcium releasing free calcium ions to bind with alginic acid providing strength to raft formation. GDA was significantly superior (p <.0001) to all other comparators.

Membrane raft association is a determinant of plasma membrane localization.

Science.gov (United States)

Diaz-Rohrer, Blanca B; Levental, Kandice R; Simons, Kai; Levental, Ilya

2014-06-10

The lipid raft hypothesis proposes lateral domains driven by preferential interactions between sterols, sphingolipids, and specific proteins as a central mechanism for the regulation of membrane structure and function; however, experimental limitations in defining raft composition and properties have prevented unequivocal demonstration of their functional relevance. Here, we establish a quantitative, functional relationship between raft association and subcellular protein sorting. By systematic mutation of the transmembrane and juxtamembrane domains of a model transmembrane protein, linker for activation of T-cells (LAT), we generated a panel of variants possessing a range of raft affinities. These mutations revealed palmitoylation, transmembrane domain length, and transmembrane sequence to be critical determinants of membrane raft association. Moreover, plasma membrane (PM) localization was strictly dependent on raft partitioning across the entire panel of unrelated mutants, suggesting that raft association is necessary and sufficient for PM sorting of LAT. Abrogation of raft partitioning led to mistargeting to late endosomes/lysosomes because of a failure to recycle from early endosomes. These findings identify structural determinants of raft association and validate lipid-driven domain formation as a mechanism for endosomal protein sorting.

Millennial-scale interaction between ice sheets and ocean circulation during marine isotope stage 100

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Masao eOhno

2016-05-01

Full Text Available Waxing/waning of the ice sheets and the associated change in thermohaline circulation have played an important role in global climate change since major continental ice sheets appeared in the northern hemisphere about 2.75 million years ago. In the earliest glacial stages, however, establishment of the linkage between ice sheet development and ocean circulation remain largely unclear. Here we show new high-resolution records of marine isotope stage 100 recovered from deep-sea sediments on the Gardar Drift, in the subpolar North Atlantic. Results of a wide range of analyses clearly reveal the influence of millennial-scale variability in iceberg discharge on ocean surface condition and bottom current variability in the subpolar North Atlantic during marine isotope stage 100. We identified eight events of ice-rafted debris, which occurred mostly with decreases in sea surface temperature and in current components indicating North Atlantic Deep Water. These decreases are interpreted by weakened deep water formation linked to iceberg discharge, similarly to observations from the last glacial period. Dolomite fraction of the ice-rafted events in early MIS 100 like the last glacial Heinrich events suggests massive collapse of the Laurentide ice sheet in North America. At the same time, our early glacial data suggest differences from the last glacial period: absence of 1470-year periodicity in the interactions between ice sheets and ocean, and northerly shift of the ice-rafted debris belt. Our high-resolution data largely improve the picture of ice-sheet/ocean interactions on millennial time scales in the early glacial period after major Northern Hemisphere glaciation.

Lipid raft involvement in yeast cell growth and death

Energy Technology Data Exchange (ETDEWEB)

Mollinedo, Faustino, E-mail: fmollin@usal.es [Instituto de Biología Molecular y Celular del Cáncer, Centro de Investigación del Cáncer, Consejo Superior de Investigaciones Científicas - Universidad de Salamanca, Salamanca (Spain)

2012-10-10

The notion that cellular membranes contain distinct microdomains, acting as scaffolds for signal transduction processes, has gained considerable momentum. In particular, a class of such domains that is rich in sphingolipids and cholesterol, termed as lipid rafts, is thought to compartmentalize the plasma membrane, and to have important roles in survival and cell death signaling in mammalian cells. Likewise, yeast lipid rafts are membrane domains enriched in sphingolipids and ergosterol, the yeast counterpart of mammalian cholesterol. Sterol-rich membrane domains have been identified in several fungal species, including the budding yeast Saccharomyces cerevisiae, the fission yeast Schizosaccharomyces pombe as well as the pathogens Candida albicans and Cryptococcus neoformans. Yeast rafts have been mainly involved in membrane trafficking, but increasing evidence implicates rafts in a wide range of additional cellular processes. Yeast lipid rafts house biologically important proteins involved in the proper function of yeast, such as proteins that control Na{sup +}, K{sup +}, and pH homeostasis, which influence many cellular processes, including cell growth and death. Membrane raft constituents affect drug susceptibility, and drugs interacting with sterols alter raft composition and membrane integrity, leading to yeast cell death. Because of the genetic tractability of yeast, analysis of yeast rafts could be an excellent model to approach unanswered questions of mammalian raft biology, and to understand the role of lipid rafts in the regulation of cell death and survival in human cells. A better insight in raft biology might lead to envisage new raft-mediated approaches to the treatment of human diseases where regulation of cell death and survival is critical, such as cancer and neurodegenerative diseases.

Lipid raft involvement in yeast cell growth and death

International Nuclear Information System (INIS)

Mollinedo, Faustino

2012-01-01

The notion that cellular membranes contain distinct microdomains, acting as scaffolds for signal transduction processes, has gained considerable momentum. In particular, a class of such domains that is rich in sphingolipids and cholesterol, termed as lipid rafts, is thought to compartmentalize the plasma membrane, and to have important roles in survival and cell death signaling in mammalian cells. Likewise, yeast lipid rafts are membrane domains enriched in sphingolipids and ergosterol, the yeast counterpart of mammalian cholesterol. Sterol-rich membrane domains have been identified in several fungal species, including the budding yeast Saccharomyces cerevisiae, the fission yeast Schizosaccharomyces pombe as well as the pathogens Candida albicans and Cryptococcus neoformans. Yeast rafts have been mainly involved in membrane trafficking, but increasing evidence implicates rafts in a wide range of additional cellular processes. Yeast lipid rafts house biologically important proteins involved in the proper function of yeast, such as proteins that control Na + , K + , and pH homeostasis, which influence many cellular processes, including cell growth and death. Membrane raft constituents affect drug susceptibility, and drugs interacting with sterols alter raft composition and membrane integrity, leading to yeast cell death. Because of the genetic tractability of yeast, analysis of yeast rafts could be an excellent model to approach unanswered questions of mammalian raft biology, and to understand the role of lipid rafts in the regulation of cell death and survival in human cells. A better insight in raft biology might lead to envisage new raft-mediated approaches to the treatment of human diseases where regulation of cell death and survival is critical, such as cancer and neurodegenerative diseases.

Self Righting Life Raft

Science.gov (United States)

1982-01-01

The Givens Buoy Raft was designed and manufactured for inventor Jim Givens of Givens Marine Survival Co. Inc., by RPR Industries, Inc. The Raft consists of a canopied topside and an underwater hemispheric ballast chamber. It has a heavy ballast stabilization system, adopted from NASA technology, which negates the capsizing problem. A "flapper valve" admits large amounts of water to the hemisphere chamber providing ballast to keep the center of gravity constant; stabilization system compensates for changes in wave angle and weight shifting of raft occupants. Mr. Givens has an exclusive patent license for use of the NASA technology. Produced in various sizes, capacities range from six to 20 persons. Raft is housed in a canister, available in several configurations. A pull on a line triggers the automatic inflation process, which takes 12 seconds. The raft has been credited with saving 230 lives in the last five years. It has found wide acceptance with operators of fishing boats, pleasure craft and other vessels. The Coast Guard is purchasing the rafts for use on its rescue helicopters and the Navy has a development program to adapt the system. The Coast Guard last year announced a proposed amendment of its regulations that would require large ballast chambers on inflatable life rafts.

Generation of stable lipid raft microdomains in the enterocyte brush border by selective endocytic removal of non-raft membrane.

Directory of Open Access Journals (Sweden)

E Michael Danielsen

Full Text Available The small intestinal brush border has an unusually high proportion of glycolipids which promote the formation of lipid raft microdomains, stabilized by various cross-linking lectins. This unique membrane organization acts to provide physical and chemical stability to the membrane that faces multiple deleterious agents present in the gut lumen, such as bile salts, digestive enzymes of the pancreas, and a plethora of pathogens. In the present work, we studied the constitutive endocytosis from the brush border of cultured jejunal explants of the pig, and the results indicate that this process functions to enrich the contents of lipid raft components in the brush border. The lipophilic fluorescent marker FM, taken up into early endosomes in the terminal web region (TWEEs, was absent from detergent resistant membranes (DRMs, implying an association with non-raft membrane. Furthermore, neither major lipid raft-associated brush border enzymes nor glycolipids were detected by immunofluorescence microscopy in subapical punctae resembling TWEEs. Finally, two model raft lipids, BODIPY-lactosylceramide and BODIPY-GM1, were not endocytosed except when cholera toxin subunit B (CTB was present. In conclusion, we propose that constitutive, selective endocytic removal of non-raft membrane acts as a sorting mechanism to enrich the brush border contents of lipid raft components, such as glycolipids and the major digestive enzymes. This sorting may be energetically driven by changes in membrane curvature when molecules move from a microvillar surface to an endocytic invagination.

Generation of stable lipid raft microdomains in the enterocyte brush border by selective endocytic removal of non-raft membrane.

Science.gov (United States)

Danielsen, E Michael; Hansen, Gert H

2013-01-01

The small intestinal brush border has an unusually high proportion of glycolipids which promote the formation of lipid raft microdomains, stabilized by various cross-linking lectins. This unique membrane organization acts to provide physical and chemical stability to the membrane that faces multiple deleterious agents present in the gut lumen, such as bile salts, digestive enzymes of the pancreas, and a plethora of pathogens. In the present work, we studied the constitutive endocytosis from the brush border of cultured jejunal explants of the pig, and the results indicate that this process functions to enrich the contents of lipid raft components in the brush border. The lipophilic fluorescent marker FM, taken up into early endosomes in the terminal web region (TWEEs), was absent from detergent resistant membranes (DRMs), implying an association with non-raft membrane. Furthermore, neither major lipid raft-associated brush border enzymes nor glycolipids were detected by immunofluorescence microscopy in subapical punctae resembling TWEEs. Finally, two model raft lipids, BODIPY-lactosylceramide and BODIPY-GM1, were not endocytosed except when cholera toxin subunit B (CTB) was present. In conclusion, we propose that constitutive, selective endocytic removal of non-raft membrane acts as a sorting mechanism to enrich the brush border contents of lipid raft components, such as glycolipids and the major digestive enzymes. This sorting may be energetically driven by changes in membrane curvature when molecules move from a microvillar surface to an endocytic invagination.

Ice flow Modelling of the Greenland Ice Sheet

DEFF Research Database (Denmark)

Nielsen, Lisbeth Tangaa

Models of ice flow have a range of application in glaciology, including investigating the large-scale response of ice sheets to changes in climate, assimilating data to estimate unknown conditions beneath the ice sheet, and in interpreting proxy records obtained from ice cores, among others. In t...... a steady state with respect to the reference climate at the end of the simulation and that the mass balance of the ice sheet at this time was more sensitive to recent climate fluctuations than the temperature forcing in the early or mid-Holocene.......Models of ice flow have a range of application in glaciology, including investigating the large-scale response of ice sheets to changes in climate, assimilating data to estimate unknown conditions beneath the ice sheet, and in interpreting proxy records obtained from ice cores, among others....... In this PhD project, the use of ice flow models for the interpretation of the age-structure of the Greenland ice sheet, i.e. the depth within the ice, at which ice deposited at given times are found at present day. Two different observational data sets of this archive were investigated. Further, paleo...

Research status of wave energy conversion (WEC) device of raft structure

Science.gov (United States)

Dong, Jianguo; Gao, Jingwei; Tao, Liang; Zheng, Peng

2017-10-01

This paper has briefly described the concept of wave energy generation and six typical conversion devices. As for raft structure, detailed analysis is provided from its development process to typical devices. Taking the design process and working principle of Plamis as an example, the general principle of raft structure is briefly described. After that, a variety of raft structure models are introduced. Finally, the advantages and disadvantages, and development trend of raft structure are pointed out.

Contribution of Deformation to Sea Ice Mass Balance: A Case Study From an N-ICE2015 Storm

Science.gov (United States)

Itkin, Polona; Spreen, Gunnar; Hvidegaard, Sine Munk; Skourup, Henriette; Wilkinson, Jeremy; Gerland, Sebastian; Granskog, Mats A.

2018-01-01

The fastest and most efficient process of gaining sea ice volume is through the mechanical redistribution of mass as a consequence of deformation events. During the ice growth season divergent motion produces leads where new ice grows thermodynamically, while convergent motion fractures the ice and either piles the resultant ice blocks into ridges or rafts one floe under the other. Here we present an exceptionally detailed airborne data set from a 9 km2 area of first year and second year ice in the Transpolar Drift north of Svalbard that allowed us to estimate the redistribution of mass from an observed deformation event. To achieve this level of detail we analyzed changes in sea ice freeboard acquired from two airborne laser scanner surveys just before and right after a deformation event brought on by a passing low-pressure system. A linear regression model based on divergence during this storm can explain 64% of freeboard variability. Over the survey region we estimated that about 1.3% of level sea ice volume was pressed together into deformed ice and the new ice formed in leads in a week after the deformation event would increase the sea ice volume by 0.5%. As the region is impacted by about 15 storms each winter, a simple linear extrapolation would result in about 7% volume increase and 20% deformed ice fraction at the end of the season.

Millennial-scale instability of the Antarctic Ice Sheet during the last glaciation.

NARCIS (Netherlands)

Kanfoush, S.L.; Hodell, D.A.; Charles, C.D.; Guilderson, T.P.; Mortyn, P.G.

2000-01-01

Records of ice-rafted detritus (IRD) concentration in deep-sea cores from the southeast Atlantic Ocean reveal millennial-scale pulses of IRD delivery between 20,000 and 74,000 years ago. Prominent IRD layers correlate across the Polar Frontal Zone, suggesting episodes of Antarctic Ice Sheet

Two-dimensional Forster resonance energy transfer (2-D FRET) and the membrane raft hypothesis

OpenAIRE

Acasandrei, Maria; Dale, Robert; VAN DE VEN, Martin; AMELOOT, Marcel

2006-01-01

A model for analyzing Forster resonance energy transfer (FRET) data in relation to the cell plasma membrane raft hypothesis is developed to take into account: (a) the distribution of FRET donors and acceptors at the surface of probing antibody fragments specific for a putative raft component; (b) partitioning of the raft component between raft and non-raft areas of the membrane; and (c) the dependence of the raft partition on the expression level of the considered component. Analysis of relev...

Regional variations in provenance and abundance of ice-rafted clasts in Arctic Ocean sediments: Implications for the configuration of late Quaternary oceanic and atmospheric circulation in the Arctic

Science.gov (United States)

Phillips, R.L.; Grantz, A.

2001-01-01

The composition and distribution of ice-rafted glacial erratics in late Quaternary sediments define the major current systems of the Arctic Ocean and identify two distinct continental sources for the erratics. In the southern Amerasia basin up to 70% of the erratics are dolostones and limestones (the Amerasia suite) that originated in the carbonate-rich Paleozoic terranes of the Canadian Arctic Islands. These clasts reached the Arctic Ocean in glaciers and were ice-rafted to the core sites in the clockwise Beaufort Gyre. The concentration of erratics decreases northward by 98% along the trend of the gyre from southeastern Canada basin to Makarov basin. The concentration of erratics then triples across the Makarov basin flank of Lomonosov Ridge and siltstone, sandstone and siliceous clasts become dominant in cores from the ridge and the Eurasia basin (the Eurasia suite). The bedrock source for the siltstone and sandstone clasts is uncertain, but bedrock distribution and the distribution of glaciation in northern Eurasia suggest the Taymyr Peninsula-Kara Sea regions. The pattern of clast distribution in the Arctic Ocean sediments and the sharp northward decrease in concentration of clasts of Canadian Arctic Island provenance in the Amerasia basin support the conclusion that the modem circulation pattern of the Arctic Ocean, with the Beaufort Gyre dominant in the Amerasia basin and the Transpolar drift dominant in the Eurasia basin, has controlled both sea-ice and glacial iceberg drift in the Arctic Ocean during interglacial intervals since at least the late Pleistocene. The abruptness of the change in both clast composition and concentration on the Makarov basin flank of Lomonosov Ridge also suggests that the boundary between the Beaufort Gyre and the Transpolar Drift has been relatively stable during interglacials since that time. Because the Beaufort Gyre is wind-driven our data, in conjunction with the westerly directed orientation of sand dunes that formed during

Ice shelf fracture parameterization in an ice sheet model

Science.gov (United States)

Sun, Sainan; Cornford, Stephen L.; Moore, John C.; Gladstone, Rupert; Zhao, Liyun

2017-11-01

Floating ice shelves exert a stabilizing force onto the inland ice sheet. However, this buttressing effect is diminished by the fracture process, which on large scales effectively softens the ice, accelerating its flow, increasing calving, and potentially leading to ice shelf breakup. We add a continuum damage model (CDM) to the BISICLES ice sheet model, which is intended to model the localized opening of crevasses under stress, the transport of those crevasses through the ice sheet, and the coupling between crevasse depth and the ice flow field and to carry out idealized numerical experiments examining the broad impact on large-scale ice sheet and shelf dynamics. In each case we see a complex pattern of damage evolve over time, with an eventual loss of buttressing approximately equivalent to halving the thickness of the ice shelf. We find that it is possible to achieve a similar ice flow pattern using a simple rule of thumb: introducing an enhancement factor ˜ 10 everywhere in the model domain. However, spatially varying damage (or equivalently, enhancement factor) fields set at the start of prognostic calculations to match velocity observations, as is widely done in ice sheet simulations, ought to evolve in time, or grounding line retreat can be slowed by an order of magnitude.

Ice shelf fracture parameterization in an ice sheet model

Directory of Open Access Journals (Sweden)

S. Sun

2017-11-01

Full Text Available Floating ice shelves exert a stabilizing force onto the inland ice sheet. However, this buttressing effect is diminished by the fracture process, which on large scales effectively softens the ice, accelerating its flow, increasing calving, and potentially leading to ice shelf breakup. We add a continuum damage model (CDM to the BISICLES ice sheet model, which is intended to model the localized opening of crevasses under stress, the transport of those crevasses through the ice sheet, and the coupling between crevasse depth and the ice flow field and to carry out idealized numerical experiments examining the broad impact on large-scale ice sheet and shelf dynamics. In each case we see a complex pattern of damage evolve over time, with an eventual loss of buttressing approximately equivalent to halving the thickness of the ice shelf. We find that it is possible to achieve a similar ice flow pattern using a simple rule of thumb: introducing an enhancement factor ∼ 10 everywhere in the model domain. However, spatially varying damage (or equivalently, enhancement factor fields set at the start of prognostic calculations to match velocity observations, as is widely done in ice sheet simulations, ought to evolve in time, or grounding line retreat can be slowed by an order of magnitude.

Effect analysis of geometric parameters of floating raft on isolation performance

Directory of Open Access Journals (Sweden)

LI Shangda

2017-12-01

Full Text Available [Objectives] This paper focuses on the effects of the geometric parameters of a floating raft on isolation performance.[Methods] Based on the idea that the weight of a floating raft remains constant, a parametric finite element model is established using geometric parameters, and the effects of the geometric parameters when isolation performance is measured by vibration level difference are discussed.[Results] The effects of the geometric parameters of a floating raft on isolation performance are mainly reflected in the middle and high frequency areas. The most important geometric parameters which have an impact on isolation performance are the raft's height, length to width ratio and number of ribs. Adjusting the geometric parameters of the raft is one effective way to avoid the vibration frequency of mechanical equipment.[Conclusions] This paper has some practical value for the engineering design of floating raft isolation systems.

Roles of Raft-Anchored Adaptor Cbp/PAG1 in Spatial Regulation of c-Src Kinase

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Oneyama, Chitose; Suzuki, Takashi; Okada, Masato

2014-01-01

The tyrosine kinase c-Src is upregulated in numerous human cancers, implying a role for c-Src in cancer progression. Previously, we have shown that sequestration of activated c-Src into lipid rafts via a transmembrane adaptor, Cbp/PAG1, efficiently suppresses c-Src-induced cell transformation in Csk-deficient cells, suggesting that the transforming activity of c-Src is spatially regulated via Cbp in lipid rafts. To dissect the molecular mechanisms of the Cbp-mediated regulation of c-Src, a combined analysis was performed that included mathematical modeling and in vitro experiments in a c-Src- or Cbp-inducible system. c-Src activity was first determined as a function of c-Src or Cbp levels, using focal adhesion kinase (FAK) as a crucial c-Src substrate. Based on these experimental data, two mathematical models were constructed, the sequestration model and the ternary model. The computational analysis showed that both models supported our proposal that raft localization of Cbp is crucial for the suppression of c-Src function, but the ternary model, which includes a ternary complex consisting of Cbp, c-Src, and FAK, also predicted that c-Src function is dependent on the lipid-raft volume. Experimental analysis revealed that c-Src activity is elevated when lipid rafts are disrupted and the ternary complex forms in non-raft membranes, indicating that the ternary model accurately represents the system. Moreover, the ternary model predicted that, if Cbp enhances the interaction between c-Src and FAK, Cbp could promote c-Src function when lipid rafts are disrupted. These findings underscore the crucial role of lipid rafts in the Cbp-mediated negative regulation of c-Src-transforming activity, and explain the positive role of Cbp in c-Src regulation under particular conditions where lipid rafts are perturbed. PMID:24675741

Down-regulation of lipid raft-associated onco-proteins via cholesterol-dependent lipid raft internalization in docosahexaenoic acid-induced apoptosis.

Science.gov (United States)

Lee, Eun Jeong; Yun, Un-Jung; Koo, Kyung Hee; Sung, Jee Young; Shim, Jaegal; Ye, Sang-Kyu; Hong, Kyeong-Man; Kim, Yong-Nyun

2014-01-01

Lipid rafts, plasma membrane microdomains, are important for cell survival signaling and cholesterol is a critical lipid component for lipid raft integrity and function. DHA is known to have poor affinity for cholesterol and it influences lipid rafts. Here, we investigated a mechanism underlying the anti-cancer effects of DHA using a human breast cancer cell line, MDA-MB-231. We found that DHA decreased cell surface levels of lipid rafts via their internalization, which was partially reversed by cholesterol addition. With DHA treatment, caveolin-1, a marker for rafts, and EGFR were colocalized with LAMP-1, a lysosomal marker, in a cholesterol-dependent manner, indicating that DHA induces raft fusion with lysosomes. DHA not only displaced several raft-associated onco-proteins, including EGFR, Hsp90, Akt, and Src, from the rafts but also decreased total levels of those proteins via multiple pathways, including the proteasomal and lysosomal pathways, thereby decreasing their activities. Hsp90 overexpression maintained its client proteins, EGFR and Akt, and attenuated DHA-induced cell death. In addition, overexpression of Akt or constitutively active Akt attenuated DHA-induced apoptosis. All these data indicate that the anti-proliferative effect of DHA is mediated by targeting of lipid rafts via decreasing cell surface lipid rafts by their internalization, thereby decreasing raft-associated onco-proteins via proteasomal and lysosomal pathways and decreasing Hsp90 chaperone function. © 2013.

The high-level marine shell-bearing deposits of Clava, Inverness-shire, and their origin as glacial rafts

Science.gov (United States)

Merritt, J. W.

The enigmatic high-level, till-covered, cold water marine shell-bearing deposits at Clava, Inverness-shire, are described systematically in the light of new observations made at sites documented in the literature. The marine deposits, named here as the Clava Shelly Formation, include three members, the unfossiliferous Clava sand, the underlying Clava shelly clay and a shelly diamicton known as the Clava shelly till. The first two members form a conformable coarsening-upwards sequence containing a shallow water, high-boreal to low-Arctic fauna and flora. The Clava shelly till is essentially glacially re-sedimented glaciomarine clay containing a sparse fauna, but its stratigraphic relationship and age are not absolutely clear. The shelly clay is ascribed to a Mid-Devensian interstadial episode on the basis of amino-acid dating. It is concluded that the Clava shelly clay, and several discrete masses of Clava sand and shelly till, are glacially transported allochthons derived from the Great Glen. The rafts were probably detached as a result of high pore water pressure building up in laterally restricted aquifers beneath a confined glacier that flowed north-eastwards across the Loch Ness basin. This glacier was deflected eastwards and upwards towards Clava by ice flowing from the northern Highlands along the Beauly Firth during the build-up of the last Scottish ice-sheet. The rafts were stacked at the ice margin when the glacier entered the Nairn Valley before being overriden by the expanding ice-sheet.

Raft tectonics in northern Campos Basin; Tectonica de jangada (raft tectonics) na area norte da Bacia de Campos

Energy Technology Data Exchange (ETDEWEB)

Castro, Marilia R. de [Universidade Estadual do Norte Fluminense (UENF), Campos dos Goytacases, RJ (Brazil)]|[PETROBRAS, Macae, RJ (Brazil). Unidade de Negocio da Bacia de Campos; Fugita, Adhemar M. [Universidade do Estado, Rio de Janeiro, RJ (Brazil). Programa de Recursos Humanos da ANP

2004-07-01

In the northern area of Campos Basin salt gliding/spreading processes promoted the break-up and transport of Cretaceous and Tertiary rocks overlying the evaporites. This process is known as raft tectonics, and it represents the most extreme form of thin-skinned extension above the salt decollement surface. Three distinct geotectonic domains were recognized that formed in response to the raft tectonics. The first one, confined to the shallower shelf portion of the basin, is characterized by minor extension (pre-raft domain), probably because of small salt thickness and low gradient. In the second domain (or disorganized rafts domain), located in distal platformal and slope areas, seismic sections show the occurrence of blocks or rafts with angular shapes, sometimes imbricated and frequently discontinuous. In the third domain, or domain of organized rafts, located in bacinal region, seismic sections show a more continuous raft pattern, often folded because of salt compression in the distal portions of the basin. The main purposes of this work is to characterize these three tectonic domains distinguished by raft tectonics, as well as their importance in hydrocarbon accumulations in calcarenites. (author)

Integrative Analysis of Subcellular Quantitative Proteomics Studies Reveals Functional Cytoskeleton Membrane-Lipid Raft Interactions in Cancer.

Science.gov (United States)

Shah, Anup D; Inder, Kerry L; Shah, Alok K; Cristino, Alexandre S; McKie, Arthur B; Gabra, Hani; Davis, Melissa J; Hill, Michelle M

2016-10-07

Lipid rafts are dynamic membrane microdomains that orchestrate molecular interactions and are implicated in cancer development. To understand the functions of lipid rafts in cancer, we performed an integrated analysis of quantitative lipid raft proteomics data sets modeling progression in breast cancer, melanoma, and renal cell carcinoma. This analysis revealed that cancer development is associated with increased membrane raft-cytoskeleton interactions, with ∼40% of elevated lipid raft proteins being cytoskeletal components. Previous studies suggest a potential functional role for the raft-cytoskeleton in the action of the putative tumor suppressors PTRF/Cavin-1 and Merlin. To extend the observation, we examined lipid raft proteome modulation by an unrelated tumor suppressor opioid binding protein cell-adhesion molecule (OPCML) in ovarian cancer SKOV3 cells. In agreement with the other model systems, quantitative proteomics revealed that 39% of OPCML-depleted lipid raft proteins are cytoskeletal components, with microfilaments and intermediate filaments specifically down-regulated. Furthermore, protein-protein interaction network and simulation analysis showed significantly higher interactions among cancer raft proteins compared with general human raft proteins. Collectively, these results suggest increased cytoskeleton-mediated stabilization of lipid raft domains with greater molecular interactions as a common, functional, and reversible feature of cancer cells.

Regulation of AMPA receptor localization in lipid rafts

Science.gov (United States)

Hou, Qingming; Huang, Yunfei; Amato, Stephen; Snyder, Solomon H.; Huganir, Richard L.; Man, Heng-Ye

2009-01-01

Lipid rafts are special microdomains enriched in cholesterol, sphingolipids and certain proteins, and play important roles in a variety of cellular functions including signal transduction and protein trafficking. We report that in cultured cortical and hippocampal neurons the distribution of lipid rafts is development-dependent. Lipid rafts in mature neurons exist on the entire cell-surface and display a high degree of mobility. AMPA receptors co-localize and associate with lipid rafts in the plasma membrane. The association of AMPARs with rafts is under regulation; through the NOS–NO pathway, NMDA receptor activity increases AMPAR localization in rafts. During membrane targeting, AMPARs insert into or at close proximity of the surface raft domains. Perturbation of lipid rafts dramatically suppresses AMPA receptor exocytosis, resulting in significant reduction in AMPAR cell-surface expression. PMID:18411055

Targeted radionuclide therapy with RAFT-RGD radiolabelled with (90)Y or (177)Lu in a mouse model of αvβ3-expressing tumours.

Science.gov (United States)

Bozon-Petitprin, A; Bacot, S; Gauchez, A S; Ahmadi, M; Bourre, J C; Marti-Batlle, D; Perret, P; Broisat, A; Riou, L M; Claron, M; Boturyn, D; Fagret, D; Ghezzi, Catherine; Vuillez, J P

2015-02-01

The αvβ3 integrin plays an important role in tumour-induced angiogenesis, tumour proliferation, survival and metastasis. The tetrameric RGD-based peptide, regioselectively addressable functionalized template-(cyclo-[RGDfK])4 (RAFT-RGD), specifically targets the αvβ3 integrin in vitro and in vivo. The aim of this study was to evaluate the therapeutic potential of RAFT-RGD radiolabelled with β(-) emitters in a nude mouse model of αvβ3 integrin-expressing tumours. Biodistribution and SPECT/CT imaging studies were performed after injection of (90)Y-RAFT-RGD or (177)Lu-RAFT-RGD in nude mice subcutaneously xenografted with αvβ3 integrin-expressing U-87 MG cells. Experimental targeted radionuclide therapy with (90)Y-RAFT-RGD or (177)Lu-RAFT-RGD and (90)Y-RAFT-RAD or (177)Lu-RAFT-RAD (nonspecific controls) was evaluated by intravenous injection of the radionuclides into mice bearing αvβ3 integrin-expressing U-87 MG tumours of different sizes (small or large) or bearing TS/A-pc tumours that do not express αvβ3. Tumour volume doubling time was used to evaluate the efficacy of each treatment. Injection of 37 MBq of (90)Y-RAFT-RGD into mice with large αvβ3-positive tumours or 37 MBq of (177)Lu-RAFT-RGD into mice with small αvβ3-positive tumours caused significant growth delays compared to mice treated with 37 MBq of (90)Y-RAFT-RAD or 37 MBq of (177)Lu-RAFT-RAD or untreated mice. In contrast, injection of 30 MBq of (90)Y-RAFT-RGD had no effect on the growth of αvβ3-negative tumours. (90)Y-RAFT-RGD and (177)Lu-RAFT-RGD are potent agents targeting αvβ3-expressing tumours for internal targeted radiotherapy.

Generation of organotypic raft cultures from primary human keratinocytes.

Science.gov (United States)

Anacker, Daniel; Moody, Cary

2012-02-22

The development of organotypic epithelial raft cultures has provided researchers with an efficient in vitro system that faithfully recapitulates epithelial differentiation. There are many uses for this system. For instance, the ability to grow three-dimensional organotypic raft cultures of keratinocytes has been an important milestone in the study of human papillomavirus (HPV)(1). The life cycle of HPV is tightly linked to the differentiation of squamous epithelium(2). Organotypic epithelial raft cultures as demonstrated here reproduce the entire papillomavirus life cycle, including virus production(3,4,5). In addition, these raft cultures exhibit dysplastic lesions similar to those observed upon in vivo infection with HPV. Hence this system can also be used to study epithelial cell cancers, as well as the effect of drugs on epithelial cell differentiation in general. Originally developed by Asselineau and Prunieras(6) and modified by Kopan et al.(7), the organotypic epithelial raft culture system has matured into a general, relatively easy culture model, which involves the growth of cells on collagen plugs maintained at an air-liquid interface (Figure 1A). Over the course of 10-14 days, the cells stratify and differentiate, forming a full thickness epithelium that produces differentiation-specific cytokeratins. Harvested rafts can be examined histologically, as well as by standard molecular and biochemical techniques. In this article, we describe a method for the generation of raft cultures from primary human keratinocytes. The same technique can be used with established epithelial cell lines, and can easily be adapted for use with epithelial tissue from normal or diseased biopsies(8). Many viruses target either the cutaneous or mucosal epithelium as part of their replicative life cycle. Over the past several years, the feasibility of using organotypic raft cultures as a method of studying virus-host cell interactions has been shown for several herpesviruses, as

Global ice sheet modeling

International Nuclear Information System (INIS)

Hughes, T.J.; Fastook, J.L.

1994-05-01

The University of Maine conducted this study for Pacific Northwest Laboratory (PNL) as part of a global climate modeling task for site characterization of the potential nuclear waste respository site at Yucca Mountain, NV. The purpose of the study was to develop a global ice sheet dynamics model that will forecast the three-dimensional configuration of global ice sheets for specific climate change scenarios. The objective of the third (final) year of the work was to produce ice sheet data for glaciation scenarios covering the next 100,000 years. This was accomplished using both the map-plane and flowband solutions of our time-dependent, finite-element gridpoint model. The theory and equations used to develop the ice sheet models are presented. Three future scenarios were simulated by the model and results are discussed

Polynyas and Ice Production Evolution in the Ross Sea (PIPERS)

Science.gov (United States)

Ackley, S. F.

2017-12-01

One focus of the PIPERS cruise into the Ross Sea ice cover during April-June 2017 was the Terra Nova Bay (TNB) polynya where joint measurements of air-ice-ocean wave interaction were conducted over twelve days. In Terra Nova Bay, measurements were made in three katabatic wind events each with sustained winds over 35 ms-1 and air temperatures below -15C. Near shore, intense wave fields with wave amplitudes of over 2m and 7-9 sec periods built and large amounts of frazil ice crystals grew. The frazil ice gathered initially into short and narrow plumes that eventually were added laterally to create longer and wider streaks or bands. Breaking waves within these wider streaks were dampened which appeared to enhance the development of pancake ice. Eventually, the open water areas between the streaks sealed off, developing a complete ice cover of 100 percent concentration (80-90 percent pancakes, 20-10 percent frazil) over a wide front (30km). The pancakes continued to grow in diameter and thickness as waves alternately contracted and expanded the ice cover, with the thicker larger floes further diminishing the wave field and lateral motion between pancakes until the initial pancake ice growth ceased. The equilibrium thickness of the ice was 20-30cm in the pancake ice. While the waves had died off however, katabatic wind velocities were sustained and resulted in a wide area of concentrated, rafted, pancake ice that was rapidly advected downstream until the end of the katabatic event. High resolution TerraSar-X radar satellite imagery showed the length of the ice area produced in one single event extended over 300km or ten times the length of the open water area during one polynya event. The TNB polynya is therefore an "ice factory" where frazil ice is manufactured into pancake ice floes that are then pushed out of the assembly area and advected, rafted (and occasionally piled up into "dragon skin" ice), until the katabatic wind dies off at the coastal source.

With or without rafts? Alternative views on cell membranes.

Science.gov (United States)

Sevcsik, Eva; Schütz, Gerhard J

2016-02-01

The fundamental mechanisms of protein and lipid organization at the plasma membrane have continued to engage researchers for decades. Among proposed models, one idea has been particularly successful which assumes that sterol-dependent nanoscopic phases of different lipid chain order compartmentalize proteins, thereby modulating protein functionality. This model of membrane rafts has sustainably sparked the fields of membrane biophysics and biology, and shifted membrane lipids into the spotlight of research; by now, rafts have become an integral part of our terminology to describe a variety of cell biological processes. But is the evidence clear enough to continue supporting a theoretical concept which has resisted direct proof by observation for nearly twenty years? In this essay, we revisit findings that gave rise to and substantiated the raft hypothesis, discuss its impact on recent studies, and present alternative mechanisms to account for plasma membrane heterogeneity. © 2015 WILEY Periodicals, Inc.

Desmosome Assembly and Disassembly Are Membrane Raft-Dependent

Science.gov (United States)

Faundez, Victor; Koval, Michael; Mattheyses, Alexa L.; Kowalczyk, Andrew P.

2014-01-01

Strong intercellular adhesion is critical for tissues that experience mechanical stress, such as the skin and heart. Desmosomes provide adhesive strength to tissues by anchoring desmosomal cadherins of neighboring cells to the intermediate filament cytoskeleton. Alterations in assembly and disassembly compromise desmosome function and may contribute to human diseases, such as the autoimmune skin blistering disease pemphigus vulgaris (PV). We previously demonstrated that PV auto-antibodies directed against the desmosomal cadherin desmoglein 3 (Dsg3) cause loss of adhesion by triggering membrane raft-mediated Dsg3 endocytosis. We hypothesized that raft membrane microdomains play a broader role in desmosome homeostasis by regulating the dynamics of desmosome assembly and disassembly. In human keratinocytes, Dsg3 is raft associated as determined by biochemical and super resolution immunofluorescence microscopy methods. Cholesterol depletion, which disrupts rafts, prevented desmosome assembly and adhesion, thus functionally linking rafts to desmosome formation. Interestingly, Dsg3 did not associate with rafts in cells lacking desmosomal proteins. Additionally, PV IgG-induced desmosome disassembly occurred by redistribution of Dsg3 into raft-containing endocytic membrane domains, resulting in cholesterol-dependent loss of adhesion. These findings demonstrate that membrane rafts are required for desmosome assembly and disassembly dynamics, suggesting therapeutic potential for raft targeting agents in desmosomal diseases such as PV. PMID:24498201

Wave–ice interactions in the neXtSIM sea-ice model

Directory of Open Access Journals (Sweden)

T. D. Williams

2017-09-01

Full Text Available In this paper we describe a waves-in-ice model (WIM, which calculates ice breakage and the wave radiation stress (WRS. This WIM is then coupled to the new sea-ice model neXtSIM, which is based on the elasto-brittle (EB rheology. We highlight some numerical issues involved in the coupling and investigate the impact of the WRS, and of modifying the EB rheology to lower the stiffness of the ice in the area where the ice has broken up (the marginal ice zone or MIZ. In experiments in the absence of wind, we find that wind waves can produce noticeable movement of the ice edge in loose ice (concentration around 70 % – up to 36 km, depending on the material parameters of the ice that are used and the dynamical model used for the broken ice. The ice edge position is unaffected by the WRS if the initial concentration is higher (≳ 0.9. Swell waves (monochromatic waves with low frequency do not affect the ice edge location (even for loose ice, as they are attenuated much less than the higher-frequency components of a wind wave spectrum, and so consequently produce a much lower WRS (by about an order of magnitude at least.In the presence of wind, we find that the wind stress dominates the WRS, which, while large near the ice edge, decays exponentially away from it. This is in contrast to the wind stress, which is applied over a much larger ice area. In this case (when wind is present the dynamical model for the MIZ has more impact than the WRS, although that effect too is relatively modest. When the stiffness in the MIZ is lowered due to ice breakage, we find that on-ice winds produce more compression in the MIZ than in the pack, while off-ice winds can cause the MIZ to be separated from the pack ice.

Oceanic rafting by a coastal community.

Science.gov (United States)

Fraser, Ceridwen I; Nikula, Raisa; Waters, Jonathan M

2011-03-07

Oceanic rafting is thought to play a fundamental role in assembling the biological communities of isolated coastal ecosystems. Direct observations of this key ecological and evolutionary process are, however, critically lacking. The importance of macroalgal rafting as a dispersal mechanism has remained uncertain, largely owing to lack of knowledge about the capacity of fauna to survive long voyages at sea and successfully make landfall and establish. Here, we directly document the rafting of a diverse assemblage of intertidal organisms across several hundred kilometres of open ocean, from the subantarctic to mainland New Zealand. Multispecies analyses using phylogeographic and ecological data indicate that 10 epifaunal invertebrate species rafted on six large bull kelp specimens for several weeks from the subantarctic Auckland and/or Snares Islands to the Otago coast of New Zealand, a minimum distance of some 400-600 km. These genetic data are the first to demonstrate that passive rafting can enable simultaneous trans-oceanic transport and landfall of numerous coastal taxa.

Intermediate Radical Termination Theory in Elucidation of RAFT Kinetics and Comparison to Experimental Data

Directory of Open Access Journals (Sweden)

M. Baqeri-Jagharq

2008-12-01

Full Text Available In current work a comprehensive mechanism based on intermediate radical termination theory is assumed for RAFT polymerization of styrene over cumyl dithiobenzoate as RAFT agent. Rate constants for addition (ka and fragmentation reactions (kf are set to 6×106 and 5×104 respectively, which lead to an equilibrium constant value of K = ka/kf = 1.2 x 102. Moment equations method was used to model this mechanism and the results were compared to experimental data to verify modeling. The effects of changing RAFT agent concentration on conversion, molecular weight and polydispersity index of the final product were investigated through the modeling. According to the results, the likelihood of living polymerization increases with raising RAFT agent concentration which leads to linearity of conversion and molecular weight curves and therefore lowering the polydispersity index and narrowing the molecular weight distribution.

Lipid Raft: A Floating Island Of Death or Survival

Science.gov (United States)

George, Kimberly S.; Wu, Shiyong

2012-01-01

Lipid rafts are microdomains of the plasma membrane enriched in cholesterol and sphingolipids, and play an important role in the initiation of many pharmacological agent-induced signaling pathways and toxicological effects. The structure of lipid rafts is dynamic, resulting in an ever-changing content of both lipids and proteins. Cholesterol, as a major component of lipid rafts, is critical for the formation and configuration of lipid rafts microdomains, which provide signaling platforms capable of activating both pro-apoptotic and anti-apoptotic signaling pathways. A change of cholesterol level can result in lipid rafts disruption and activate or deactivate raft-associated proteins, such as death receptor proteins, protein kinases, and calcium channels. Several anti-cancer drugs are able to suppress growth and induce apoptosis of tumor cells through alteration of lipid raft contents via disrupting lipid raft integrity. PMID:22289360

An ice sheet model validation framework for the Greenland ice sheet

Science.gov (United States)

Price, Stephen F.; Hoffman, Matthew J.; Bonin, Jennifer A.; Howat, Ian M.; Neumann, Thomas; Saba, Jack; Tezaur, Irina; Guerber, Jeffrey; Chambers, Don P.; Evans, Katherine J.; Kennedy, Joseph H.; Lenaerts, Jan; Lipscomb, William H.; Perego, Mauro; Salinger, Andrew G.; Tuminaro, Raymond S.; van den Broeke, Michiel R.; Nowicki, Sophie M. J.

2017-01-01

We propose a new ice sheet model validation framework - the Cryospheric Model Comparison Tool (CmCt) - that takes advantage of ice sheet altimetry and gravimetry observations collected over the past several decades and is applied here to modeling of the Greenland ice sheet. We use realistic simulations performed with the Community Ice Sheet Model (CISM) along with two idealized, non-dynamic models to demonstrate the framework and its use. Dynamic simulations with CISM are forced from 1991 to 2013, using combinations of reanalysis-based surface mass balance and observations of outlet glacier flux change. We propose and demonstrate qualitative and quantitative metrics for use in evaluating the different model simulations against the observations. We find that the altimetry observations used here are largely ambiguous in terms of their ability to distinguish one simulation from another. Based on basin-scale and whole-ice-sheet-scale metrics, we find that simulations using both idealized conceptual models and dynamic, numerical models provide an equally reasonable representation of the ice sheet surface (mean elevation differences of framework demonstrates that our proposed metrics can distinguish relatively better from relatively worse simulations and that dynamic ice sheet models, when appropriately initialized and forced with the right boundary conditions, demonstrate a predictive skill with respect to observed dynamic changes that have occurred on Greenland over the past few decades. An extensible design will allow for continued use of the CmCt as future altimetry, gravimetry, and other remotely sensed data become available for use in ice sheet model validation.

The Hamburg sea-ice model

International Nuclear Information System (INIS)

Stoessel, A.; Owens, W.B.

1992-10-01

The general purpose of the model is to simulate sea ice dynamically as well as thermodynamically. Pure sea-ice models are generally highly dependent on the specified atmospheric and oceanic forcing, especially on the winds and the vertical oceanic heat flux. In order to reduce these dependencies, the sea-ice [SI] model was extended to optionally include a prognostic oceanic mixed layer [OML], a diagnostic atmospheric surface layer [ASL] and/or a diagnostic atmospheric boundary layer [ABL], thus shifting the forcing levels further away from the surface (i.e. from the sea ice) and simultaneously providing a modification of the forcing considering boundary-layer adjustments to the instantaneous sea-ice conditions given by the SI model. A further major extension of the model is the (optional) employment of a prognostic snow layer. The special application characterising the present code was sea-ice simulation in the Southern Ocean, employing a spherical, circumpolar grid with a resolution of 2.5 in latitude and 5 in longitude, extending from 50 S to 80 S and using a daily time step. (orig.)

CICE, The Los Alamos Sea Ice Model

Energy Technology Data Exchange (ETDEWEB)

2017-05-12

The Los Alamos sea ice model (CICE) is the result of an effort to develop a computationally efficient sea ice component for a fully coupled atmosphere–land–ocean–ice global climate model. It was originally designed to be compatible with the Parallel Ocean Program (POP), an ocean circulation model developed at Los Alamos National Laboratory for use on massively parallel computers. CICE has several interacting components: a vertical thermodynamic model that computes local growth rates of snow and ice due to vertical conductive, radiative and turbulent fluxes, along with snowfall; an elastic-viscous-plastic model of ice dynamics, which predicts the velocity field of the ice pack based on a model of the material strength of the ice; an incremental remapping transport model that describes horizontal advection of the areal concentration, ice and snow volume and other state variables; and a ridging parameterization that transfers ice among thickness categories based on energetic balances and rates of strain. It also includes a biogeochemical model that describes evolution of the ice ecosystem. The CICE sea ice model is used for climate research as one component of complex global earth system models that include atmosphere, land, ocean and biogeochemistry components. It is also used for operational sea ice forecasting in the polar regions and in numerical weather prediction models.

Targeted radionuclide therapy with RAFT-RGD radiolabelled with {sup 90}Y or {sup 177}Lu in a mouse model of αvβ3-expressing tumours

Energy Technology Data Exchange (ETDEWEB)

Bozon-Petitprin, A.; Bacot, S.; Ahmadi, M.; Marti-Batlle, D.; Perret, P.; Broisat, A.; Riou, L.M. [INSERM, U1039, Grenoble (France); Universite de Grenoble, UMR-S1039, Grenoble (France); Gauchez, A.S.; Bourre, J.C.; Fagret, D.; Vuillez, J.P. [INSERM, U1039, Grenoble (France); Universite de Grenoble, UMR-S1039, Grenoble (France); CHRU Grenoble, Hopital Michallon, Service de Medecine Nucleaire, Grenoble (France); Claron, M.; Boturyn, D. [CNRS, UMR 5250, Departement de Chimie Moleculaire, Grenoble (France); Ghezzi, Catherine [INSERM, U1039, Grenoble (France); Universite de Grenoble, UMR-S1039, Grenoble (France); INSERM U1039, Radiopharmaceutiques biocliniques, Batiment Jean Roget, Domaine de la Merci, Faculte de Medecine, La Tronche (France)

2014-08-28

The αvβ3 integrin plays an important role in tumour-induced angiogenesis, tumour proliferation, survival and metastasis. The tetrameric RGD-based peptide, regioselectively addressable functionalized template-(cyclo-[RGDfK]){sub 4} (RAFT-RGD), specifically targets the αvβ3 integrin in vitro and in vivo. The aim of this study was to evaluate the therapeutic potential of RAFT-RGD radiolabelled with β{sup -} emitters in a nude mouse model of αvβ3 integrin-expressing tumours. Biodistribution and SPECT/CT imaging studies were performed after injection of {sup 90}Y-RAFT-RGD or {sup 177}Lu-RAFT-RGD in nude mice subcutaneously xenografted with αvβ3 integrin-expressing U-87 MG cells. Experimental targeted radionuclide therapy with {sup 90}Y-RAFT-RGD or {sup 177}Lu-RAFT-RGD and {sup 90}Y-RAFT-RAD or {sup 177}Lu-RAFT-RAD (nonspecific controls) was evaluated by intravenous injection of the radionuclides into mice bearing αvβ3 integrin-expressing U-87 MG tumours of different sizes (small or large) or bearing TS/A-pc tumours that do not express αvβ3. Tumour volume doubling time was used to evaluate the efficacy of each treatment. Injection of 37 MBq of {sup 90}Y-RAFT-RGD into mice with large αvβ3-positive tumours or 37 MBq of {sup 177}Lu-RAFT-RGD into mice with small αvβ3-positive tumours caused significant growth delays compared to mice treated with 37 MBq of {sup 90}Y-RAFT-RAD or 37 MBq of {sup 177}Lu-RAFT-RAD or untreated mice. In contrast, injection of 30 MBq of {sup 90}Y-RAFT-RGD had no effect on the growth of αvβ3-negative tumours. {sup 90}Y-RAFT-RGD and {sup 177}Lu-RAFT-RGD are potent agents targeting αvβ3-expressing tumours for internal targeted radiotherapy. (orig.)

Sea Ice Summer Camp: Bringing Together Arctic Sea Ice Modelers and Observers

Science.gov (United States)

Perovich, D. K.; Holland, M. M.

2016-12-01

The Arctic sea ice has undergone dramatic change and numerical models project this to continue for the foreseeable future. Understanding the mechanisms behind sea ice loss and its consequences for the larger Arctic and global systems is of critical importance if we are to anticipate and plan for the future. One impediment to progress is a disconnect between the observational and modeling communities. A sea ice summer camp was held in Barrow Alaska from 26 May to 1 June 2016 to overcome this impediment and better integrate the sea ice community. The 25 participants were a mix of modelers and observers from 13 different institutions at career stages from graduate student to senior scientist. The summer camp provided an accelerated program on sea ice observations and models and also fostered future collaborative interdisciplinary activities. Each morning was spent in the classroom with a daily lecture on an aspect of modeling or remote sensing followed by practical exercises. Topics included using models to assess sensitivity, to test hypotheses and to explore sources of uncertainty in future Arctic sea ice loss. The afternoons were spent on the ice making observations. There were four observational activities; albedo observations, ice thickness measurements, ice coring and physical properties, and ice morphology surveys. The last field day consisted of a grand challenge where the group formulated a hypothesis, developed an observational and modeling strategy to test the hypothesis, and then integrated the observations and model results. The impacts of changing sea ice are being felt today in Barrow Alaska. We opened a dialog with Barrow community members to further understand these changes. This included an evening discussion with two Barrow sea ice experts and a community presentation of our work in a public lecture at the Inupiat Heritage Center.

Capabilities and performance of Elmer/Ice, a new-generation ice sheet model

Directory of Open Access Journals (Sweden)

O. Gagliardini

2013-08-01

Full Text Available The Fourth IPCC Assessment Report concluded that ice sheet flow models, in their current state, were unable to provide accurate forecast for the increase of polar ice sheet discharge and the associated contribution to sea level rise. Since then, the glaciological community has undertaken a huge effort to develop and improve a new generation of ice flow models, and as a result a significant number of new ice sheet models have emerged. Among them is the parallel finite-element model Elmer/Ice, based on the open-source multi-physics code Elmer. It was one of the first full-Stokes models used to make projections for the evolution of the whole Greenland ice sheet for the coming two centuries. Originally developed to solve local ice flow problems of high mechanical and physical complexity, Elmer/Ice has today reached the maturity to solve larger-scale problems, earning the status of an ice sheet model. Here, we summarise almost 10 yr of development performed by different groups. Elmer/Ice solves the full-Stokes equations, for isotropic but also anisotropic ice rheology, resolves the grounding line dynamics as a contact problem, and contains various basal friction laws. Derived fields, like the age of the ice, the strain rate or stress, can also be computed. Elmer/Ice includes two recently proposed inverse methods to infer badly known parameters. Elmer is a highly parallelised code thanks to recent developments and the implementation of a block preconditioned solver for the Stokes system. In this paper, all these components are presented in detail, as well as the numerical performance of the Stokes solver and developments planned for the future.

Synaptic membrane rafts: traffic lights for local neurotrophin signaling?

Science.gov (United States)

Zonta, Barbara; Minichiello, Liliana

2013-10-18

Lipid rafts, cholesterol and lipid rich microdomains, are believed to play important roles as platforms for the partitioning of transmembrane and synaptic proteins involved in synaptic signaling, plasticity, and maintenance. There is increasing evidence of a physical interaction between post-synaptic densities and post-synaptic lipid rafts. Localization of proteins within lipid rafts is highly regulated, and therefore lipid rafts may function as traffic lights modulating and fine-tuning neuronal signaling. The tyrosine kinase neurotrophin receptors (Trk) and the low-affinity p75 neurotrophin receptor (p75(NTR)) are enriched in neuronal lipid rafts together with the intermediates of downstream signaling pathways, suggesting a possible role of rafts in neurotrophin signaling. Moreover, neurotrophins and their receptors are involved in the regulation of cholesterol metabolism. Cholesterol is an important component of lipid rafts and its depletion leads to gradual loss of synapses, underscoring the importance of lipid rafts for proper neuronal function. Here, we review and discuss the idea that translocation of neurotrophin receptors in synaptic rafts may account for the selectivity of their transduced signals.

Synaptic membrane rafts: traffic lights for local neurotrophin signalling?

Directory of Open Access Journals (Sweden)

Barbara eZonta

2013-10-01

Full Text Available Lipid rafts, cholesterol and lipid rich microdomains, are believed to play important roles as platforms for the partitioning of transmembrane and synaptic proteins involved in synaptic signalling, plasticity and maintenance. There is increasing evidence of a physical interaction between post-synaptic densities and post-synaptic lipid rafts. Localization of proteins within lipid rafts is highly regulated, and therefore lipid rafts may function as traffic lights modulating and fine-tuning neuronal signalling. The tyrosine kinase neurotrophin receptors (Trk and the low-affinity p75 neurotrophin receptor (p75NTR are enriched in neuronal lipid rafts together with the intermediates of downstream signalling pathways, suggesting a possible role of rafts in neurotrophin signalling. Moreover, neurotrophins and their receptors are involved in the regulation of cholesterol metabolism. Cholesterol is an important component of lipid rafts and its depletion leads to gradual loss of synapses, underscoring the importance of lipid rafts for proper neuronal function. Here, we review and discuss the idea that translocation of neurotrophin receptors in synaptic rafts may account for the selectivity of their transduced signals.

Docosahexaenoic acid alters Gsα localization in lipid raft and potentiates adenylate cyclase.

Science.gov (United States)

Zhu, Zhuoran; Tan, Zhoubin; Li, Yan; Luo, Hongyan; Hu, Xinwu; Tang, Ming; Hescheler, Jürgen; Mu, Yangling; Zhang, Lanqiu

2015-01-01

Supplementation with docosahexaenoic acid (DHA), an ω-3 polyunsaturated fatty acid (PUFA), recently has become popular for the amelioration of depression; however the molecular mechanism of DHA action remains unclear. The aim of this study was to investigate the mechanism underlying the antidepressant effect of DHA by evaluating Gsα localization in lipid raft and the activity of adenylate cyclase in an in vitro glioma cell model. Lipid raft fractions from C6 glioma cells treated chronically with DHA were isolated by sucrose gradient ultracentrifugation. The content of Gsα in lipid raft was analyzed by immunoblotting and colocalization of Gsα with lipid raft was subjected to confocal microscopic analysis. The intracellular cyclic adenosine monophosphate (cAMP) level was determined by cAMP immunoassay kit. DHA decreased the amount of Gsα in lipid raft, whereas whole cell lysate Gsα was not changed. Confocal microscopic analysis demonstrated that colocalization of Gsα with lipid raft was decreased, whereas DHA increased intracellular cAMP accumulation in a dose-dependent manner. Interestingly, we found that DHA increased the lipid raft level, instead of disrupting it. The results of this study suggest that DHA may exert its antidepressant effect by translocating Gsα from lipid raft and potentiating the activity of adenylate cyclase. Importantly, the reduced Gsα in lipid raft by DHA is independent of disruption of lipid raft. Overall, the study provides partial preclinical evidence supporting a safe and effective therapy using DHA for depression. Copyright © 2015 Elsevier Inc. All rights reserved.

Lipid Raft, Regulator of Plasmodesmal Callose Homeostasis.

Science.gov (United States)

Iswanto, Arya Bagus Boedi; Kim, Jae-Yean

2017-04-03

A bstract: The specialized plasma membrane microdomains known as lipid rafts are enriched by sterols and sphingolipids. Lipid rafts facilitate cellular signal transduction by controlling the assembly of signaling molecules and membrane protein trafficking. Another specialized compartment of plant cells, the plasmodesmata (PD), which regulates the symplasmic intercellular movement of certain molecules between adjacent cells, also contains a phospholipid bilayer membrane. The dynamic permeability of plasmodesmata (PDs) is highly controlled by plasmodesmata callose (PDC), which is synthesized by callose synthases (CalS) and degraded by β-1,3-glucanases (BGs). In recent studies, remarkable observations regarding the correlation between lipid raft formation and symplasmic intracellular trafficking have been reported, and the PDC has been suggested to be the regulator of the size exclusion limit of PDs. It has been suggested that the alteration of lipid raft substances impairs PDC homeostasis, subsequently affecting PD functions. In this review, we discuss the substantial role of membrane lipid rafts in PDC homeostasis and provide avenues for understanding the fundamental behavior of the lipid raft-processed PDC.

Characterization of rapid climate changes through isotope analyses of ice and entrapped air in the NEEM ice core

DEFF Research Database (Denmark)

Guillevic, Myriam

Greenland ice core have revealed the occurrence of rapid climatic instabilities during the last glacial period, known as Dansgaard-Oeschger (DO) events, while marine cores from the North Atlantic have evidenced layers of ice rafted debris deposited by icebergs melt, caused by the collapse...... mechanisms at play. Recent analytical developments have made possible to measure new paleoclimate proxies in Greenland ice cores. In this thesis we first contribute to these analytical developments by measuring the new innovative parameter 17O-excess at LSCE (Laboratoire des Sciences du Climatet de l......'Environnement, France). At the Centre for Ice and Climate (CIC, Denmark) we contribute to the development of a protocol for absolute referencing of methane gas isotopes, and making full air standard with known concentration and isotopic composition of methane. Then, air (δ15N) and water stable isotope measurements from...

Two-Phase Contiguous Supported Lipid Bilayer Model for Membrane Rafts via Polymer Blotting and Stenciling.

Science.gov (United States)

Richards, Mark J; Daniel, Susan

2017-02-07

The supported lipid bilayer has been portrayed as a useful model of the cell membrane compatible with many biophysical tools and techniques that demonstrate its appeal in learning about the basic features of the plasma membrane. However, some of its potential has yet to be realized, particularly in the area of bilayer patterning and phase/composition heterogeneity. In this work, we generate contiguous bilayer patterns as a model system that captures the general features of membrane domains and lipid rafts. Micropatterned polymer templates of two types are investigated for generating patterned bilayer formation: polymer blotting and polymer lift-off stenciling. While these approaches have been used previously to create bilayer arrays by corralling bilayers patches with various types of boundaries impenetrable to bilayer diffusion, unique to the methods presented here, there are no physical barriers to diffusion. In this work, interfaces between contiguous lipid phases define the pattern shapes, with continuity between them allowing transfer of membrane-bound biomolecules between the phases. We examine effectors of membrane domain stability including temperature and cholesterol content to investigate domain dynamics. Contiguous patterning of supported bilayers as a model of lipid rafts expands the application of the SLB to an area with current appeal and brings with it a useful toolset for characterization and analysis. These combined tools should be helpful to researchers investigating lipid raft dynamics and function and biomolecule partitioning studies. Additionally, this patterning technique may be useful for applications such as bioseparations that exploit differences in lipid phase partitioning or creation of membranes that bind species like viruses preferentially at lipid phase boundaries, to name a few.

Comparing flow-through and static ice cave models for Shoshone Ice Cave

Directory of Open Access Journals (Sweden)

Kaj E. Williams

2015-05-01

Full Text Available In this paper we suggest a new ice cave type: the “flow-through” ice cave. In a flow-through ice cave external winds blow into the cave and wet cave walls chill the incoming air to the wet-bulb temperature, thereby achieving extra cooling of the cave air. We have investigated an ice cave in Idaho, located in a lava tube that is reported to have airflow through porous wet end-walls and could therefore be a flow-through cave. We have instrumented the site and collected data for one year. In order to determine the actual ice cave type present at Shoshone, we have constructed numerical models for static and flow-through caves (dynamic is not relevant here. The models are driven with exterior measurements of air temperature, relative humidity and wind speed. The model output is interior air temperature and relative humidity. We then compare the output of both models to the measured interior air temperatures and relative humidity. While both the flow-through and static cave models are capable of preserving ice year-round (a net zero or positive ice mass balance, both models show very different cave air temperature and relative humidity output. We find the empirical data support a hybrid model of the static and flow-through models: permitting a static ice cave to have incoming air chilled to the wet-bulb temperature fits the data best for the Shoshone Ice Cave.

RAFT polymerization and some of its applications.

Science.gov (United States)

Moad, Graeme; Rizzardo, Ezio; Thang, San H

2013-08-01

Reversible addition-fragmentation chain transfer (RAFT) is one of the most robust and versatile methods for controlling radical polymerization. With appropriate selection of the RAFT agent for the monomers and reaction conditions, it is applicable to the majority of monomers subject to radical polymerization. The process can be used in the synthesis of well-defined homo-, gradient, diblock, triblock, and star polymers and more complex architectures, which include microgels and polymer brushes. In this Focus Review we describe how the development of RAFT and RAFT application has been facilitated by the adoption of continuous flow techniques using tubular reactors and through the use of high-throughput methodology. Applications described include the use of RAFT in the preparation of polymers for optoelectronics, block copolymer therapeutics, and star polymer rheology control agents. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Regulation of AMPA receptor localization in lipid rafts

OpenAIRE

Hou, Qingming; Huang, Yunfei; Amato, Stephen; Snyder, Solomon H.; Huganir, Richard L.; Man, Heng-Ye

2008-01-01

Lipid rafts are special microdomains enriched in cholesterol, sphingolipids and certain proteins, and play important roles in a variety of cellular functions including signal transduction and protein trafficking. We report that in cultured cortical and hippocampal neurons the distribution of lipid rafts is development-dependent. Lipid rafts in mature neurons exist on the entire cell-surface and display a high degree of mobility. AMPA receptors co-localize and associate with lipid rafts in the...

Multiscale Models of Melting Arctic Sea Ice

Science.gov (United States)

2014-09-30

Sea ice reflectance or albedo , a key parameter in climate modeling, is primarily determined by melt pond and ice floe configurations. Ice - albedo ...determine their albedo - a key parameter in climate modeling. Here we explore the possibility of a conceptual sea ice climate model passing through a...bifurcation points. Ising model for melt ponds on Arctic sea ice Y. Ma, I. Sudakov, and K. M. Golden Abstract: The albedo of melting

Inception of the Laurentide Ice Sheet using asynchronous coupling of a regional atmospheric model and an ice model

Science.gov (United States)

Birch, L.; Cronin, T.; Tziperman, E.

2017-12-01

The climate over the past 0.8 million years has been dominated by ice ages. Ice sheets have grown about every 100 kyrs, starting from warm interglacials, until they spanned continents. State-of-the-art global climate models (GCMs) have difficulty simulating glacial inception, or the transition of Earth's climate from an interglacial to a glacial state. It has been suggested that this failure may be related to their poorly resolved local mountain topography, due to their coarse spatial resolution. We examine this idea as well as the possible role of ice flow dynamics missing in GCMs. We investigate the growth of the Laurentide Ice Sheet at 115 kya by focusing on the mountain glaciers of Canada's Baffin Island, where geologic evidence indicates the last inception occurred. We use the Weather Research and Forecasting model (WRF) in a regional, cloud-resolving configuration with resolved mountain terrain to explore how quickly Baffin Island could become glaciated with the favorable yet realizable conditions of 115 kya insolation, cool summers, and wet winters. Using the model-derived mountain glacier mass balance, we force an ice sheet model based on the shallow-ice approximation, capturing the ice flow that may be critical to the spread of ice sheets away from mountain ice caps. The ice sheet model calculates the surface area newly covered by ice and the change in the ice surface elevation, which we then use to run WRF again. Through this type of iterated asynchronous coupling, we investigate how the regional climate responds to both larger areas of ice cover and changes in ice surface elevation. In addition, we use the NOAH-MP Land model to characterize the importance of land processes, like refreezing. We find that initial ice growth on the Penny Ice Cap causes regional cooling that increases the accumulation on the Barnes Ice Cap. We investigate how ice and topography changes on Baffin Island may impact both the regional climate and the large-scale circulation.

RAFT polymerization mediated bioconjugation strategies

OpenAIRE

Bulmuş, Volga

2011-01-01

This review aims to highlight the use of RAFT polymerization in the synthesis of polymer bioconjugates. It covers two main bioconjugation strategies using the RAFT process: (i) post-polymerization bioconjugations using pre-synthesized reactive polymers, and (ii) bioconjugations via in situ polymerization using biomolecule-modified monomers or chain transfer agents. © 2011 The Royal Society of Chemistry.

RAFT: a computer program for fault tree risk calculations

International Nuclear Information System (INIS)

Seybold, G.D.

1977-11-01

A description and user instructions are presented for RAFT, a FORTRAN computer code for calculation of a risk measure for fault tree cut sets. RAFT calculates release quantities and a risk measure based on the product of probability and release quantity for cut sets of fault trees modeling the accidental release of radioactive material from a nuclear fuel cycle facility. Cut sets and their probabilities are supplied as input to RAFT from an external fault tree analysis code. Using the total inventory available of radioactive material, along with release fractions for each event in a cut set, the release terms are calculated for each cut set. Each release term is multiplied by the cut set probability to yield the cut set risk measure. RAFT orders the dominant cut sets on the risk measure. The total risk measure of processed cut sets and their fractional contributions are supplied as output. Input options are available to eliminate redundant cut sets, apply threshold values on cut set probability and risk, and control the total number of cut sets output. Hash addressing is used to remove redundant cut sets from the analysis. Computer hardware and software restrictions are given along with a sample problem and cross-reference table of the code. Except for the use of file management utilities, RAFT is written exclusively in FORTRAN language and is operational on a Control Data, CYBER 74-18--series computer system. 4 figures

Transnational Sea-Ice Transport in a Warmer, More Mobile Arctic

Science.gov (United States)

Newton, R.; Tremblay, B.; Pfirman, S. L.; DeRepentigny, P.

2015-12-01

As the Arctic sea ice thins, summer ice continues to shrink in its area, and multi-year ice becomes rarer, winter ice is not disappearing from the Arctic Basin. Rather, it is ever more dominated by first year ice. And each summer, as the total coverage withdraws, the first year ice is able travel faster and farther, carrying any ice-rafted material with it. Micro-organisms, sediments, pollutants and river runoff all move across the Arctic each summer and are deposited hundreds of kilometers from their origins. Analyzing Arctic sea ice drift patterns in the context of the exclusive economic zones (EEZs) of the Arctic nations raises concerns about the changing fate of "alien" ice which forms within one country's EEZ, then drifts and melts in another country's EEZ. We have developed a new data set from satellite-based ice-drift data that allows us to track groups of ice "pixels" forward from their origin to their destination, or backwards from their melting location to their point of formation. The software has been integrated with model output to extend the tracking of sea ice to include climate projections. Results indicate, for example, that Russian sea ice dominates "imports" to the EEZ of Norway, as expected, but with increasing ice mobility it is also is exported into the EEZs of other countries, including Canada and the United States. Regions of potential conflict are identified, including several national borders with extensive and/or changing transboundary sea ice transport. These data are a starting point for discussion of transborder questions raised by "alien" ice and the material it may import from one nation's EEZ to another's.

Mesoscale organization of domains in the plasma membrane - beyond the lipid raft.

Science.gov (United States)

Lu, Stella M; Fairn, Gregory D

2018-04-01

The plasma membrane is compartmentalized into several distinct regions or domains, which show a broad diversity in both size and lifetime. The segregation of lipids and membrane proteins is thought to be driven by the lipid composition itself, lipid-protein interactions and diffusional barriers. With regards to the lipid composition, the immiscibility of certain classes of lipids underlies the "lipid raft" concept of plasmalemmal compartmentalization. Historically, lipid rafts have been described as cholesterol and (glyco)sphingolipid-rich regions of the plasma membrane that exist as a liquid-ordered phase that are resistant to extraction with non-ionic detergents. Over the years the interest in lipid rafts grew as did the challenges with studying these nanodomains. The term lipid raft has fallen out of favor with many scientists and instead the terms "membrane raft" or "membrane nanodomain" are preferred as they connote the heterogeneity and dynamic nature of the lipid-protein assemblies. In this article, we will discuss the classical lipid raft hypothesis and its limitations. This review will also discuss alternative models of lipid-protein interactions, annular lipid shells, and larger membrane clusters. We will also discuss the mesoscale organization of plasmalemmal domains including visible structures such as clathrin-coated pits and caveolae.

Sensitivity of open-water ice growth and ice concentration evolution in a coupled atmosphere-ocean-sea ice model

Science.gov (United States)

Shi, Xiaoxu; Lohmann, Gerrit

2017-09-01

A coupled atmosphere-ocean-sea ice model is applied to investigate to what degree the area-thickness distribution of new ice formed in open water affects the ice and ocean properties. Two sensitivity experiments are performed which modify the horizontal-to-vertical aspect ratio of open-water ice growth. The resulting changes in the Arctic sea-ice concentration strongly affect the surface albedo, the ocean heat release to the atmosphere, and the sea-ice production. The changes are further amplified through a positive feedback mechanism among the Arctic sea ice, the Atlantic Meridional Overturning Circulation (AMOC), and the surface air temperature in the Arctic, as the Fram Strait sea ice import influences the freshwater budget in the North Atlantic Ocean. Anomalies in sea-ice transport lead to changes in sea surface properties of the North Atlantic and the strength of AMOC. For the Southern Ocean, the most pronounced change is a warming along the Antarctic Circumpolar Current (ACC), owing to the interhemispheric bipolar seasaw linked to AMOC weakening. Another insight of this study lies on the improvement of our climate model. The ocean component FESOM is a newly developed ocean-sea ice model with an unstructured mesh and multi-resolution. We find that the subpolar sea-ice boundary in the Northern Hemisphere can be improved by tuning the process of open-water ice growth, which strongly influences the sea ice concentration in the marginal ice zone, the North Atlantic circulation, salinity and Arctic sea ice volume. Since the distribution of new ice on open water relies on many uncertain parameters and the knowledge of the detailed processes is currently too crude, it is a challenge to implement the processes realistically into models. Based on our sensitivity experiments, we conclude a pronounced uncertainty related to open-water sea ice growth which could significantly affect the climate system sensitivity.

A summary review of modelling oil in ice

International Nuclear Information System (INIS)

Khelifa, A.

2009-01-01

The increase of maritime shipping and industrial developments in the Arctic increases the risk for potential oil spills in ice. Such spills are difficult to track, may contaminate vast areas after the melting season and may take months to clean. As such, there is a need for robust spill models that can predict the trajectory and fate of soil spilled in ice. This paper summarized the results obtained from a recent review on the state of knowledge on modelling approaches developed during the last 4 decades to predict transport and weathering of oil spilled in ice-infested waters. It showed that modelling oil spills on ice is much less developed than oil-spill modelling in open water. There appears to be a lag between the advancement of understanding the fate and behaviour and the integration of the results into operational oil-spill models. The most widely used method consists of adapting existing open-water oil spill models to ice-infested waters by introducing a correction factor proportional to ice coverage to key processes controlling the transport and weathering of oil in ice. Few models use a quadratic scaling factor. As such most existing oil spill models are inadequate to accurately reproduce field observations related to oil spills in ice. Existing data shows that variations of evaporation and emulsification rates are not linearly correlated with the percentage of ice coverage. The decrease in these rates is a function of the ice coverage, the type of ice, and varies with time after the spill. The study found that future models for oil spill in ice-infested waters should be combined with robust ice models coupled with atmospheric models, circulation models and wave models which includes the effect of ice. The dynamic approach was shown to adapt well to coupling with ice models. 81 refs., 2 tabs.

Development of a new anti-cancer agent for targeted radionuclide therapy: β- radiolabeled RAFT-RGD

International Nuclear Information System (INIS)

Petitprin, A.

2013-01-01

β-emitters radiolabeled RAFT-RGD as new agents for internal targeted radiotherapy. The αvβ3 integrin is known to play an important role in tumor-induced angiogenesis, tumor proliferation, survival and metastasis. Because of its overexpression on neo-endothelial cells such as those present in growing tumors, as well as on tumor cells of various origins, αvβ3 integrin is an attractive molecular target for diagnosis and therapy of the rapidly growing and metastatic tumors. A tetrameric RGD-based peptide, regioselectively addressable functionalized template-(cyclo-[RGDfK])4 (RAFT-RGD), specifically targets integrin αvβ3 in vitro and in vivo. RAFT-RGD has been used for tumor imaging and drug targeting. This study is the first to evaluate the therapeutic potential of the β-emitters radiolabeled tetrameric RGD peptide RAFT-RGD in a Nude mouse model of αvβ3 -expressing tumors. An injection of 37 MBq of 90 Y-RAFT-RGD or 177 Lu-RAFT-RGD in mice with αvβ3 -positive tumors caused a significant growth delay as compared with mice treated with 37 MBq of 90 Y-RAFT-RAD or 177 Lu-RAFT-RAD or untreated mice. In comparison, an injection of 30 MBq of 90 Y-RAFT-RGD had no efficacy for the treatment of αvβ3 -negative tumors. 90 Y-RAFT-RGD and 177 Lu-RAFT-RGD are potent αvβ3 -expressing tumor targeting agents for internal targeted radiotherapy. (author)

Selective association of outer surface lipoproteins with the lipid rafts of Borrelia burgdorferi.

Science.gov (United States)

Toledo, Alvaro; Crowley, Jameson T; Coleman, James L; LaRocca, Timothy J; Chiantia, Salvatore; London, Erwin; Benach, Jorge L

2014-03-11

lipid rafts, little is known about their structural contribution to these domains. Borrelia burgdorferi, the agent of Lyme disease, has lipid rafts, which are novel structures in bacteria. Here, we have shown that the raft-associated lipoproteins OspA and OspB selectively contribute to lipid rafts. A similar but non-raft-associated lipoprotein, OspC, cannot substitute for the role of OspA and OspB. In this study, we have demonstrated that lipoprotein association with lipid rafts is selective, further suggesting a functional adaptation to different stages of the spirochete life cycle. The results of this study are of broader importance and can serve as a model for other bacteria that also possess cholesterol in their membranes and, therefore, may share lipid raft traits with Borrelia.

The Settlement Behavior of Piled Raft Interaction in Undrained Soil

DEFF Research Database (Denmark)

Ghalesari, Abbasali Taghavi; Barari, Amin; Amini, Pedram Fardad

2013-01-01

Offshore piled raft foundations are one of the most commonly used foundations in offshore structures. When a raft foundation alone does not satisfy the design requirements, the addition of piles may improve both the ultimate load capacity and the settlement performance of the raft. In this paper......, the behavior of a piled raft on undrained soil is studied based on a series of parametric studies on the average and differential settlement of piled raft using three-dimensional finite element analysis. The settlement behavior is found to be dependent on the number of piles and raft thickness....

On ripples and rafts: Curvature induced nanoscale structures in lipid membranes

International Nuclear Information System (INIS)

Schmid, Friederike; Dolezel, Stefan; Meinhardt, Sebastian; Lenz, Olaf

2014-01-01

We develop an elastic theory that predicts the spontaneous formation of nanoscale structures in lipid bilayers which locally phase separate between two phases with different spontaneous monolayer curvature. The theory rationalizes in a unified manner the observation of a variety of nanoscale structures in lipid membranes: Rippled states in one-component membranes, lipid rafts in multicomponent membranes. Furthermore, we report on recent observations of rippled states and rafts in simulations of a simple coarse-grained model for lipid bilayers, which are compatible with experimental observations and with our elastic model

Radiation-induced controlled polymerization of acrylic acid by RAFT and RAFT-MADIX methods in protic solvents

Science.gov (United States)

Sütekin, S. Duygu; Güven, Olgun

2018-01-01

The kinetic investigation of one-pot synthesis of poly(acrylic acid) (PAA) prepared via gamma radiation induced controlled polymerization was reported. PAA homopolymers were prepared by Reversible Addition-Fragmentation Chain Transfer (RAFT) polymerization in the presence of trithiocarbonate-based chain transfer agent (CTA) 2-(Dodecylthiocarbonothioylthio)-2-methylpropionic acid (DDMAT) and also by Reversible Addition-Fragmentation/Macromolecular Design by Inter-change of Xanthates (RAFT/MADIX) polymerization in the presence of a xanthate based CTA O-ethyl-S-(1-methoxycarbonyl) ethyl dithiocarbonate (RA1). The polymerizations were performed at room temperature by the virtue of ionizing radiation. Protic solvents were used for the RAFT polymerization of AA considering environmental profits. The linear first-order kinetic plot, close control of molecular weight by the monomer/CTA molar ratio supported that the polymerization proceeds in a living fashion. The linear increase in molecular weight with conversion monitored by Size Exclusion Chromatography (SEC) is another proof of controlling of polymerization. [Monomer]/[RAFT] ratio and conversion was controlled to obtain PAA in the molecular weight range of 6900-35,800 with narrow molecular weight distributions. Reaction kinetics and effect of the amount of RAFT agent were investigated in detail. Between two different types of CTA, trithiocarbonate based DDMAT was found to be more efficient in terms of low dispersity (Đ) and linear first-order kinetic behavior for the radiation induced controlled synthesis of PAA homopolymers.

Glacial Cycles and ice-sheet modelling

NARCIS (Netherlands)

Oerlemans, J.

1982-01-01

An attempt is made to simulate the Pleistocene glacial cycles with a numerical model of the Northern Hemisphere ice sheets. This model treats the vertically-integrated ice flow along a meridian, including computation of bedrock adjustment and temperature distribution in the ice. Basal melt water is

Modeling Europa's Ice-Ocean Interface

Science.gov (United States)

Elsenousy, A.; Vance, S.; Bills, B. G.

2014-12-01

This work focuses on modeling the ice-ocean interface on Jupiter's Moon (Europa); mainly from the standpoint of heat and salt transfer relationship with emphasis on the basal ice growth rate and its implications to Europa's tidal response. Modeling the heat and salt flux at Europa's ice/ocean interface is necessary to understand the dynamics of Europa's ocean and its interaction with the upper ice shell as well as the history of active turbulence at this area. To achieve this goal, we used McPhee et al., 2008 parameterizations on Earth's ice/ocean interface that was developed to meet Europa's ocean dynamics. We varied one parameter at a time to test its influence on both; "h" the basal ice growth rate and on "R" the double diffusion tendency strength. The double diffusion tendency "R" was calculated as the ratio between the interface heat exchange coefficient αh to the interface salt exchange coefficient αs. Our preliminary results showed a strong double diffusion tendency R ~200 at Europa's ice-ocean interface for plausible changes in the heat flux due to onset or elimination of a hydrothermal activity, suggesting supercooling and a strong tendency for forming frazil ice.

Analysis of raft foundations for spent fuel pool in nuclear facilities

International Nuclear Information System (INIS)

Subramanian, K.V.; Kashikar, A.V.; Nath, C.; Shintre, C.C.

2005-01-01

Foundation rafts are analysed as a plate on elastic foundation with the representation of the foundation media using the Winkler idealisation i.e. series of linear uncoupled springs. The elastic constant of the Winkler springs is derived using the sub-grade modulus. However, the Winkler approach has limitations due to incompatibility of the deflections at raft-soil interface. The deflection of the raft at the point of contact and the deformation of the foundation media at this point of contact are incompatible in this approach. This particularly influences flexible rafts and further if the foundation media is soil. This paper discusses the analysis of raft, in general, and the analysis of the foundation raft for a Spent Fuel pool facility using 'variable k approach' where deformations at a node and influencing nodes are computed using Boussinesq's theory. The limitations stated above are overcome in this approach. Some studies on the sensitivity of parameters were carried out in the form of variation of moduli of elasticity of concrete and deformation modulus of soil. Analysis is also performed with conventional method using 'Winkler' soil springs. It is concluded that the Winkler model does not correctly predict the behaviour of the mat both qualitatively and quantitatively and could lead to underestimation of soil pressures leading to unconservative design. The approach involving soil structure interaction like the one presented here is hence recommended for important structures like those involved in Nuclear facilities. (authors)

optimizing conventional des concrete raft ng conventional design

African Journals Online (AJOL)

eobe

concrete cross section area of raft slab foundation ... accurately modeling boundary cond never be ... the design of reinforced concrete flat ... undation and soil layer configuration adopted for the finite element analy .... After the application of.

Variational Ridging in Sea Ice Models

Science.gov (United States)

Roberts, A.; Hunke, E. C.; Lipscomb, W. H.; Maslowski, W.; Kamal, S.

2017-12-01

This work presents the results of a new development to make basin-scale sea ice models aware of the shape, porosity and extent of individual ridges within the pack. We have derived an analytic solution for the Euler-Lagrange equation of individual ridges that accounts for non-conservative forces, and therefore the compressive strength of individual ridges. Because a region of the pack is simply a collection of paths of individual ridges, we are able to solve the Euler-Lagrange equation for a large-scale sea ice field also, and therefore the compressive strength of a region of the pack that explicitly accounts for the macro-porosity of ridged debris. We make a number of assumptions that have simplified the problem, such as treating sea ice as a granular material in ridges, and assuming that bending moments associated with ridging are perturbations around an isostatic state. Regardless of these simplifications, the ridge model is remarkably predictive of macro-porosity and ridge shape, and, because our equations are analytic, they do not require costly computations to solve the Euler-Lagrange equation of ridges on the large scale. The new ridge model is therefore applicable to large-scale sea ice models. We present results from this theoretical development, as well as plans to apply it to the Regional Arctic System Model and a community sea ice code. Most importantly, the new ridging model is particularly useful for pinpointing gaps in our observational record of sea ice ridges, and points to the need for improved measurements of the evolution of porosity of deformed ice in the Arctic and Antarctic. Such knowledge is not only useful for improving models, but also for improving estimates of sea ice volume derived from altimetric measurements of sea ice freeboard.

Lipid Raft, Regulator of Plasmodesmal Callose Homeostasis

Directory of Open Access Journals (Sweden)

Arya Bagus Boedi Iswanto

2017-04-01

Full Text Available Abstract: The specialized plasma membrane microdomains known as lipid rafts are enriched by sterols and sphingolipids. Lipid rafts facilitate cellular signal transduction by controlling the assembly of signaling molecules and membrane protein trafficking. Another specialized compartment of plant cells, the plasmodesmata (PD, which regulates the symplasmic intercellular movement of certain molecules between adjacent cells, also contains a phospholipid bilayer membrane. The dynamic permeability of plasmodesmata (PDs is highly controlled by plasmodesmata callose (PDC, which is synthesized by callose synthases (CalS and degraded by β-1,3-glucanases (BGs. In recent studies, remarkable observations regarding the correlation between lipid raft formation and symplasmic intracellular trafficking have been reported, and the PDC has been suggested to be the regulator of the size exclusion limit of PDs. It has been suggested that the alteration of lipid raft substances impairs PDC homeostasis, subsequently affecting PD functions. In this review, we discuss the substantial role of membrane lipid rafts in PDC homeostasis and provide avenues for understanding the fundamental behavior of the lipid raft–processed PDC.

The IceCube Computing Infrastructure Model

CERN Multimedia

CERN. Geneva

2012-01-01

Besides the big LHC experiments a number of mid-size experiments is coming online which need to define new computing models to meet the demands on processing and storage requirements of those experiments. We present the hybrid computing model of IceCube which leverages GRID models with a more flexible direct user model as an example of a possible solution. In IceCube a central datacenter at UW-Madison servers as Tier-0 with a single Tier-1 datacenter at DESY Zeuthen. We describe the setup of the IceCube computing infrastructure and report on our experience in successfully provisioning the IceCube computing needs.

Analysis of detergent-free lipid rafts isolated from CD4+ T cell line: interaction with antigen presenting cells promotes coalescing of lipid rafts

Directory of Open Access Journals (Sweden)

Kennedy Colleen

2011-12-01

Full Text Available Abstract Background Lipid rafts present on the plasma membrane play an important role in spatiotemporal regulation of cell signaling. Physical and chemical characterization of lipid raft size and assessment of their composition before, and after cell stimulation will aid in developing a clear understanding of their regulatory role in cell signaling. We have used visual and biochemical methods and approaches for examining individual and lipid raft sub-populations isolated from a mouse CD4+ T cell line in the absence of detergents. Results Detergent-free rafts were analyzed before and after their interaction with antigen presenting cells. We provide evidence that the average diameter of lipid rafts isolated from un-stimulated T cells, in the absence of detergents, is less than 100 nm. Lipid rafts on CD4+ T cell membranes coalesce to form larger structures, after interacting with antigen presenting cells even in the absence of a foreign antigen. Conclusions Findings presented here indicate that lipid raft coalescence occurs during cellular interactions prior to sensing a foreign antigen.

Genotype-induced changes in biophysical properties of frontal cortex lipid raft from APP/PS1 transgenic mice

Directory of Open Access Journals (Sweden)

Mario L Diaz

2012-11-01

Full Text Available Alterations in the lipid composition of lipid rafts have been demonstrated both in human brain and transgenic mouse models, and it has been postulated that aberrant lipid composition in lipid rafts is partly responsible for neuronal degeneration. In order to assess the impact of lipid changes on lipid raft functional properties, we have aimed at determining relevant physicochemical modifications in lipid rafts purified from frontal cortex of wild type (WT and APP/PS1 double transgenic mice. By means of steady-state fluorescence anisotropy analyses using two lipid soluble fluorescent probes, TMA-DPH (1-[(4-trimethyl-aminophenyl]-6-phenyl-1,3,5-hexatriene and DPH (1,6-diphenyl-1,3,5-hexatriene, we demonstrate that cortical lipid rafts from WT and APP/PS1 animals exhibit different biophysical behaviours, depending on genotype but also on age. Thus, aged APP/PS1 animals exhibited slightly more liquid-ordered lipid rafts than WT counterparts. Membrane microviscosity napp analyses demonstrate that WT lipid rafts are more fluid than APP/PS1 animals of similar age, both at the aqueous interface and hydrophobic core of the membrane. napp in APP/PS1 animals was higher for DPH than for TMA-DPH under similar experimental conditions, indicating that the internal core of the membrane is more viscous than the raft membrane at the aqueous interface. The most dramatic changes in biophysical properties of lipid rafts were observed when membrane cholesterol was depleted with methyl-beta-cyclodextrin. Overall, our results indicate that APP/PS1 genotype strongly affects physicochemical properties of lipid raft. Such alterations appear not to be homogeneous across the raft membrane axis, but rather are more prominent at the membrane plane. These changes correlate with aberrant proportions of sphingomyelin, cholesterol and saturated fatty acids, as well as polyunsaturated fatty acids, measured in lipid rafts from frontal cortex in this familial model of

The response of grounded ice to ocean temperature forcing in a coupled ice sheet-ice shelf-ocean cavity model

Science.gov (United States)

Goldberg, D. N.; Little, C. M.; Sergienko, O. V.; Gnanadesikan, A.

2010-12-01

Ice shelves provide a pathway for the heat content of the ocean to influence continental ice sheets. Changes in the rate or location of basal melting can alter their geometry and effect changes in stress conditions at the grounding line, leading to a grounded ice response. Recent observations of ice streams and ice shelves in the Amundsen Sea sector of West Antarctica have been consistent with this story. On the other hand, ice dynamics in the grounding zone control flux into the shelf and thus ice shelf geometry, which has a strong influence on the circulation in the cavity beneath the shelf. Thus the coupling between the two systems, ocean and ice sheet-ice shelf, can be quite strong. We examine the response of the ice sheet-ice shelf-ocean cavity system to changes in ocean temperature using a recently developed coupled model. The coupled model consists a 3-D ocean model (GFDL's Generalized Ocean Layered Dynamics model, or GOLD) to a two-dimensional ice sheet-ice shelf model (Goldberg et al, 2009), and allows for changing cavity geometry and a migrating grounding line. Steady states of the coupled system are found even under considerable forcing. The ice shelf morphology and basal melt rate patterns of the steady states exhibit detailed structure, and furthermore seem to be unique and robust. The relationship between temperature forcing and area-averaged melt rate is influenced by the response of ice shelf morphology to thermal forcing, and is found to be sublinear in the range of forcing considered. However, results suggest that area-averaged melt rate is not the best predictor of overall system response, as grounding line stability depends on local aspects of the basal melt field. Goldberg, D N, D M Holland and C G Schoof, 2009. Grounding line movement and ice shelf buttressing in marine ice sheets, Journal of Geophysical Research-Earth Surfaces, 114, F04026.

Accelerated Combinatorial High Throughput Star Polymer Synthesis via a Rapid One-Pot Sequential Aqueous RAFT (rosa-RAFT) Polymerization Scheme.

Science.gov (United States)

Cosson, Steffen; Danial, Maarten; Saint-Amans, Julien Rosselgong; Cooper-White, Justin J

2017-04-01

Advanced polymerization methodologies, such as reversible addition-fragmentation transfer (RAFT), allow unprecedented control over star polymer composition, topology, and functionality. However, using RAFT to produce high throughput (HTP) combinatorial star polymer libraries remains, to date, impracticable due to several technical limitations. Herein, the methodology "rapid one-pot sequential aqueous RAFT" or "rosa-RAFT," in which well-defined homo-, copolymer, and mikto-arm star polymers can be prepared in very low to medium reaction volumes (50 µL to 2 mL) via an "arm-first" approach in air within minutes, is reported. Due to the high conversion of a variety of acrylamide/acrylate monomers achieved during each successive short reaction step (each taking 3 min), the requirement for intermediary purification is avoided, drastically facilitating and accelerating the star synthesis process. The presented methodology enables RAFT to be applied to HTP polymeric bio/nanomaterials discovery pipelines, in which hundreds of complex polymeric formulations can be rapidly produced, screened, and scaled up for assessment in a wide range of applications. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Lipid raft association restricts CD44-ezrin interaction and promotion of breast cancer cell migration.

LENUS (Irish Health Repository)

Donatello, Simona

2012-12-01

Cancer cell migration is an early event in metastasis, the main cause of breast cancer-related deaths. Cholesterol-enriched membrane domains called lipid rafts influence the function of many molecules, including the raft-associated protein CD44. We describe a novel mechanism whereby rafts regulate interactions between CD44 and its binding partner ezrin in migrating breast cancer cells. Specifically, in nonmigrating cells, CD44 and ezrin localized to different membranous compartments: CD44 predominantly in rafts, and ezrin in nonraft compartments. After the induction of migration (either nonspecific or CD44-driven), CD44 affiliation with lipid rafts was decreased. This was accompanied by increased coprecipitation of CD44 and active (threonine-phosphorylated) ezrin-radixin-moesin (ERM) proteins in nonraft compartments and increased colocalization of CD44 with the nonraft protein, transferrin receptor. Pharmacological raft disruption using methyl-β-cyclodextrin also increased CD44-ezrin coprecipitation and colocalization, further suggesting that CD44 interacts with ezrin outside rafts during migration. Conversely, promoting CD44 retention inside lipid rafts by pharmacological inhibition of depalmitoylation virtually abolished CD44-ezrin interactions. However, transient single or double knockdown of flotillin-1 or caveolin-1 was not sufficient to increase cell migration over a short time course, suggesting complex crosstalk mechanisms. We propose a new model for CD44-dependent breast cancer cell migration, where CD44 must relocalize outside lipid rafts to drive cell migration. This could have implications for rafts as pharmacological targets to down-regulate cancer cell migration.

Lipid Raft Association Restricts CD44-Ezrin Interaction and Promotion of Breast Cancer Cell Migration

Science.gov (United States)

Donatello, Simona; Babina, Irina S.; Hazelwood, Lee D.; Hill, Arnold D.K.; Nabi, Ivan R.; Hopkins, Ann M.

2012-01-01

Cancer cell migration is an early event in metastasis, the main cause of breast cancer-related deaths. Cholesterol-enriched membrane domains called lipid rafts influence the function of many molecules, including the raft-associated protein CD44. We describe a novel mechanism whereby rafts regulate interactions between CD44 and its binding partner ezrin in migrating breast cancer cells. Specifically, in nonmigrating cells, CD44 and ezrin localized to different membranous compartments: CD44 predominantly in rafts, and ezrin in nonraft compartments. After the induction of migration (either nonspecific or CD44-driven), CD44 affiliation with lipid rafts was decreased. This was accompanied by increased coprecipitation of CD44 and active (threonine-phosphorylated) ezrin-radixin-moesin (ERM) proteins in nonraft compartments and increased colocalization of CD44 with the nonraft protein, transferrin receptor. Pharmacological raft disruption using methyl-β-cyclodextrin also increased CD44-ezrin coprecipitation and colocalization, further suggesting that CD44 interacts with ezrin outside rafts during migration. Conversely, promoting CD44 retention inside lipid rafts by pharmacological inhibition of depalmitoylation virtually abolished CD44-ezrin interactions. However, transient single or double knockdown of flotillin-1 or caveolin-1 was not sufficient to increase cell migration over a short time course, suggesting complex crosstalk mechanisms. We propose a new model for CD44-dependent breast cancer cell migration, where CD44 must relocalize outside lipid rafts to drive cell migration. This could have implications for rafts as pharmacological targets to down-regulate cancer cell migration. PMID:23031255

Identification of Novel Raft Marker Protein, FlotP in Bacillus anthracis.

Science.gov (United States)

Somani, Vikas K; Aggarwal, Somya; Singh, Damini; Prasad, Tulika; Bhatnagar, Rakesh

2016-01-01

Lipid rafts are dynamic, nanoscale assemblies of specific proteins and lipids, distributed heterogeneously on eukaryotic membrane. Flotillin-1, a conserved eukaryotic raft marker protein (RMP) harbor SPFH (Stomatin, Prohibitin, Flotillin, and HflK/C) and oligomerization domains to regulate various cellular processes through its interactions with other signaling or transport proteins. Rafts were thought to be absent in prokaryotes hitherto, but recent report of its presence and significance in physiology of Bacillus subtilis prompted us to investigate the same in pathogenic bacteria (PB) also. In prokaryotes, proteins of SPFH2a subfamily show highest identity to SPFH domain of Flotillin-1. Moreover, bacterial genome organization revealed that Flotillin homolog harboring SPFH2a domain exists in an operon with an upstream gene containing NFeD domain. Here, presence of RMP in PB was initially investigated in silico by analyzing the presence of SPFH2a, oligomerization domains in the concerned gene and NfeD domain in the adjacent upstream gene. After investigating 300 PB, four were found to harbor RMP. Among them, domains of Bas0525 (FlotP) of Bacillus anthracis (BA) showed highest identity with characteristic domains of RMP. Considering the global threat of BA as the bioterror agent, it was selected as a model for further in vitro characterization of rafts in PB. In silico and in vitro analysis showed significant similarity of FlotP with numerous attributes of Flotillin-1. Its punctate distribution on membrane with exclusive localization in detergent resistant membrane fraction; strongly favors presence of raft with RMP FlotP in BA. Furthermore, significant effect of Zaragozic acid (ZA), a raft associated lipid biosynthesis inhibitor, on several patho-physiological attributes of BA such as growth, morphology, membrane rigidity etc., were also observed. Specifically, a considerable decrease in membrane rigidity, strongly recommended presence of an unknown raft associated

Coordinated Mapping of Sea Ice Deformation Features with Autonomous Vehicles

Science.gov (United States)

Maksym, T.; Williams, G. D.; Singh, H.; Weissling, B.; Anderson, J.; Maki, T.; Ackley, S. F.

2016-12-01

Decreases in summer sea ice extent in the Beaufort and Chukchi Seas has lead to a transition from a largely perennial ice cover, to a seasonal ice cover. This drives shifts in sea ice production, dynamics, ice types, and thickness distribution. To examine how the processes driving ice advance might also impact the morphology of the ice cover, a coordinated ice mapping effort was undertaken during a field campaign in the Beaufort Sea in October, 2015. Here, we present observations of sea ice draft topography from six missions of an Autonomous Underwater Vehicle run under different ice types and deformation features observed during autumn freeze-up. Ice surface features were also mapped during coordinated drone photogrammetric missions over each site. We present preliminary results of a comparison between sea ice surface topography and ice underside morphology for a range of sample ice types, including hummocked multiyear ice, rubble fields, young ice ridges and rafts, and consolidated pancake ice. These data are compared to prior observations of ice morphological features from deformed Antarctic sea ice. Such data will be useful for improving parameterizations of sea ice redistribution during deformation, and for better constraining estimates of airborne or satellite sea ice thickness.

Sea ice biogeochemistry: a guide for modellers.

Directory of Open Access Journals (Sweden)

Letizia Tedesco

Full Text Available Sea ice is a fundamental component of the climate system and plays a key role in polar trophic food webs. Nonetheless sea ice biogeochemical dynamics at large temporal and spatial scales are still rarely described. Numerical models may potentially contribute integrating among sparse observations, but available models of sea ice biogeochemistry are still scarce, whether their relevance for properly describing the current and future state of the polar oceans has been recently addressed. A general methodology to develop a sea ice biogeochemical model is presented, deriving it from an existing validated model application by extension of generic pelagic biogeochemistry model parameterizations. The described methodology is flexible and considers different levels of ecosystem complexity and vertical representation, while adopting a strategy of coupling that ensures mass conservation. We show how to apply this methodology step by step by building an intermediate complexity model from a published realistic application and applying it to analyze theoretically a typical season of first-year sea ice in the Arctic, the one currently needing the most urgent understanding. The aim is to (1 introduce sea ice biogeochemistry and address its relevance to ocean modelers of polar regions, supporting them in adding a new sea ice component to their modelling framework for a more adequate representation of the sea ice-covered ocean ecosystem as a whole, and (2 extend our knowledge on the relevant controlling factors of sea ice algal production, showing that beyond the light and nutrient availability, the duration of the sea ice season may play a key-role shaping the algal production during the on going and upcoming projected changes.

The Lipid Raft Proteome of African Trypanosomes Contains Many Flagellar Proteins.

Science.gov (United States)

Sharma, Aabha I; Olson, Cheryl L; Engman, David M

2017-08-24

Lipid rafts are liquid-ordered membrane microdomains that form by preferential association of 3-β-hydroxysterols, sphingolipids and raft-associated proteins often having acyl modifications. We isolated lipid rafts of the protozoan parasite Trypanosoma brucei and determined the protein composition of lipid rafts in the cell. This analysis revealed a striking enrichment of flagellar proteins and several putative signaling proteins in the lipid raft proteome. Calpains and intraflagellar transport proteins, in particular, were found to be abundant in the lipid raft proteome. These findings provide additional evidence supporting the notion that the eukaryotic cilium/flagellum is a lipid raft-enriched specialized structure with high concentrations of sterols, sphingolipids and palmitoylated proteins involved in environmental sensing and cell signaling.

Triple Isotope Water Measurements of Lake Untersee Ice using Off-Axis ICOS

Science.gov (United States)

Berman, E. S.; Huang, Y. W.; Andersen, D. T.; Gupta, M.; McKay, C. P.

2015-12-01

Lake Untersee (71.348°S, 13.458°E) is the largest surface freshwater lake in the interior of the Gruber Mountains of central Queen Maud Land in East Antarctica. The lake is permanently covered with ice, is partly bounded by glacier ice and has a mean annual air temperature of -10°C. In contrast to other Antarctic lakes the dominating physical process controlling ice-cover dynamics is low summer temperatures and high wind speeds resulting in sublimation rather than melting as the main mass-loss process. The ice-cover of the lake is composed of lake-water ice formed during freeze-up and rafted glacial ice derived from the Anuchin Glacier. The mix of these two fractions impacts the energy balance of the lake, which directly affects ice-cover thickness. Ice-cover is important if one is to understand the physical, chemical, and biological linkages within these unique, physically driven ecosystems. We have analyzed δ2H, δ18O, and δ17O from samples of lake and glacier ice collected at Lake Untersee in Dec 2014. Using these data we seek to answer two specific questions: Are we able to determine the origin and history of the lake ice, discriminating between rafted glacial ice and lake water? Can isotopic gradients in the surface ice indicate the ablation (sublimation) rate of the surface ice? The triple isotope water analyzer developed by Los Gatos Research (LGR 912-0032) uses LGR's patented Off-Axis ICOS (Integrated Cavity Output Spectroscopy) technology and incorporates proprietary internal thermal control for high sensitivity and optimal instrument stability. This analyzer measures δ2H, δ18O, and δ17O from water, as well as the calculated d-excess and 17O-excess. The laboratory precision in high performance mode for both δ17O and δ18O is 0.03 ‰, and for δ2H is 0.2 ‰. Methodology and isotope data from Lake Untersee samples are presented. Figure: Ice samples were collected across Lake Untersee from both glacial and lake ice regions for this study.

Polarimetric SAR interferometry applied to land ice: modeling

DEFF Research Database (Denmark)

Dall, Jørgen; Papathanassiou, Konstantinos; Skriver, Henning

2004-01-01

This paper introduces a few simple scattering models intended for the application of polarimetric SAR interfer-ometry to land ice. The principal aim is to eliminate the penetration bias hampering ice sheet elevation maps generated with single-channel SAR interferometry. The polarimetric coherent...... scattering models are similar to the oriented-volume model and the random-volume-over-ground model used in vegetation studies, but the ice models are adapted to the different geometry of land ice. Also, due to compaction, land ice is not uniform; a fact that must be taken into account for large penetration...... depths. The validity of the scattering models is examined using L-band polarimetric interferometric SAR data acquired with the EMISAR system over an ice cap located in the percolation zone of the Greenland ice sheet. Radar reflectors were deployed on the ice surface prior to the data acquisition in order...

Assessing the nature of lipid raft membranes

DEFF Research Database (Denmark)

Niemelä, Perttu S; Ollila, Samuli; Hyvönen, Marja T

2007-01-01

of highly ordered lateral domains rich in sphingomyelin and cholesterol (CHOL). These domains, called functional lipid rafts, have been suggested to take part in a variety of dynamic cellular processes such as membrane trafficking, signal transduction, and regulation of the activity of membrane proteins......-scale simulations to elucidate the properties of ternary raft mixtures with CHOL, palmitoylsphingomyelin (PSM), and palmitoyloleoylphosphatidylcholine. We simulate two bilayers of 1,024 lipids for 100 ns in the liquid-ordered phase and one system of the same size in the liquid-disordered phase. The studies provide...... heterogeneity more difficult. The findings reveal aspects of the role of favored (specific) lipid-lipid interactions within rafts and clarify the prominent role of CHOL in altering the properties of the membrane locally in its neighborhood. Also, we show that the presence of PSM and CHOL in rafts leads...

Chemical driving force for rafting in superalloys

CSIR Research Space (South Africa)

Nabarro, FRN

1997-08-15

Full Text Available The author provides a brief overview of the chemical driving forces for rafting in superalloys. Until recently, all theories of the driving force for rafting have considered the compositions of the two phases to be fixed, although accepting...

Lipid raft microdomains: key sites for Coxsackievirus A9 infectious cycle

International Nuclear Information System (INIS)

Triantafilou, Kathy; Triantafilou, Martha

2003-01-01

Lipid rafts have an important property to preferentially concentrate some proteins, while excluding others. Lipid rafts can also act as functional platforms for multiple signalling and trafficking processes. Several reports have shown that lipid rafts play a crucial role in the assembly of several enveloped viruses and possibly their cell entry. In this study we investigated the importance of lipid raft formation in Coxsackievirus A9 (CAV-9) entry and cell infection. Here by using a variety of biochemical and biophysical methods, we report that receptor molecules integrin αvβ3 and GRP78, which are implicated in CAV-9 infection as well as accessory molecules such as MHC class I, are accumulated in increased concentrations in lipid rafts following CAV-9 infection. In addition our studies revealed that raft integrity is essential for this virus since CAV-9 activates the Raf/MAPK signalling pathway within the raft and raft-disrupting drugs such as nystatin and MCD can successfully inhibit CAV-9 infection

Hummocky moraine: sedimentary record of stagnant Laurentide Ice Sheet lobes resting on soft beds

Science.gov (United States)

Eyles, N.; Boyce, J. I.; Barendregt, R. W.

1999-02-01

Over large areas of the western interior plains of North America, hummocky moraine (HM) formed at the margins of Laurentide Ice Sheet (LIS) lobes that flowed upslope against topographic highs. Current depositional models argue that HM was deposited supraglacially from stagnant debris-rich ice (`disintegration moraine'). Across southern Alberta, Canada, map and outcrop data show that HM is composed of fine-grained till as much as 25 m thick containing rafts of soft, glaciotectonized bedrock and sediment. Chaotic, non-oriented HM commonly passes downslope into weakly-oriented hummocks (`washboard moraine') that are transitional to drumlins in topographic lows; the same subsurface stratigraphy and till facies is present throughout. These landforms, and others such as doughnut-like `rim ridges', flat-topped `moraine plateaux' and linear disintegration ridges, are identified as belonging to subglacially-deposited soft-bed terrain. This terrain is the record of ice lobes moving over deformation till derived from weakly-lithified, bentonite-rich shale. Drumlins record continued active ice flow in topographic lows during deglaciation whereas HM was produced below the outer stagnant margins of ice lobes by gravitational loading (`pressing') of remnant dead ice blocks into wet, plastic till. Intervening zones of washboard moraine mark the former boundary of active and stagnant ice and show `hybrid' drumlins whose streamlined form has been altered by subglacial pressing (` humdrums') below dead ice. The presence of hummocky moraine over a very large area of interior North America provides additional support for glaciological models of a soft-bedded Laurentide Ice Sheet.

Cholesterol accumulation in Niemann Pick type C (NPC) model cells causes a shift in APP localization to lipid rafts

International Nuclear Information System (INIS)

Kosicek, Marko; Malnar, Martina; Goate, Alison; Hecimovic, Silva

2010-01-01

It has been suggested that cholesterol may modulate amyloid-β (Aβ) formation, a causative factor of Alzheimer's disease (AD), by regulating distribution of the three key proteins in the pathogenesis of AD (β-amyloid precursor protein (APP), β-secretase (BACE1) and/or presenilin 1 (PS1)) within lipid rafts. In this work we tested whether cholesterol accumulation upon NPC1 dysfunction, which causes Niemann Pick type C disease (NPC), causes increased partitioning of APP into lipid rafts leading to increased CTF/Aβ formation in these cholesterol-rich membrane microdomains. To test this we used CHO NPC1 -/- cells (NPC cells) and parental CHOwt cells. By sucrose density gradient centrifugation we observed a shift in fl-APP/CTF compartmentalization into lipid raft fractions upon cholesterol accumulation in NPC vs. wt cells. Furthermore, γ-secretase inhibitor treatment significantly increased fl-APP/CTF distribution in raft fractions in NPC vs. wt cells, suggesting that upon cholesterol accumulation in NPC1-null cells increased formation of APP-CTF and its increased processing towards Aβ occurs in lipid rafts. Our results support that cholesterol overload, such as in NPC disease, leads to increased partitioning of APP/CTF into lipid rafts resulting in increased amyloidogenic processing of APP in these cholesterol-rich membranes. This work adds to the mechanism of the cholesterol-effect on APP processing and the pathogenesis of Alzheimer's disease and supports the role of lipid rafts in these processes.

Investigation of land ice-ocean interaction with a fully coupled ice-ocean model: 1. Model description and behavior

Science.gov (United States)

Goldberg, D. N.; Little, C. M.; Sergienko, O. V.; Gnanadesikan, A.; Hallberg, R.; Oppenheimer, M.

2012-06-01

Antarctic ice shelves interact closely with the ocean cavities beneath them, with ice shelf geometry influencing ocean cavity circulation, and heat from the ocean driving changes in the ice shelves, as well as the grounded ice streams that feed them. We present a new coupled model of an ice stream-ice shelf-ocean system that is used to study this interaction. The model is capable of representing a moving grounding line and dynamically responding ocean circulation within the ice shelf cavity. Idealized experiments designed to investigate the response of the coupled system to instantaneous increases in ocean temperature show ice-ocean system responses on multiple timescales. Melt rates and ice shelf basal slopes near the grounding line adjust in 1-2 years, and downstream advection of the resulting ice shelf thinning takes place on decadal timescales. Retreat of the grounding line and adjustment of grounded ice takes place on a much longer timescale, and the system takes several centuries to reach a new steady state. During this slow retreat, and in the absence of either an upward-or downward-sloping bed or long-term trends in ocean heat content, the ice shelf and melt rates maintain a characteristic pattern relative to the grounding line.

Lipid alterations in lipid rafts from Alzheimer's disease human brain cortex.

Science.gov (United States)

Martín, Virginia; Fabelo, Noemí; Santpere, Gabriel; Puig, Berta; Marín, Raquel; Ferrer, Isidre; Díaz, Mario

2010-01-01

Lipid rafts are membrane microdomains intimately associated with cell signaling. These biochemical microstructures are characterized by their high contents of sphingolipids, cholesterol and saturated fatty acids and a reduced content of polyunsaturated fatty acids (PUFA). Here, we have purified lipid rafts of human frontal brain cortex from normal and Alzheimer's disease (AD) and characterized their biochemical lipid composition. The results revealed that lipid rafts from AD brains exhibit aberrant lipid profiles compared to healthy brains. In particular, lipid rafts from AD brains displayed abnormally low levels of n-3 long chain polyunsaturated fatty acids (LCPUFA, mainly 22:6n-3, docosahexaenoic acid) and monoenes (mainly 18:1n-9, oleic acid), as well as reduced unsaturation and peroxidability indexes. Also, multiple relationships between phospholipids and fatty acids were altered in AD lipid rafts. Importantly, no changes were observed in the mole percentage of lipid classes and fatty acids in rafts from normal brains throughout the lifespan (24-85 years). These indications point to the existence of homeostatic mechanisms preserving lipid raft status in normal frontal cortex. The disruption of such mechanisms in AD brains leads to a considerable increase in lipid raft order and viscosity, which may explain the alterations in lipid raft signaling observed in AD.

Lipid raft regulates the initial spreading of melanoma A375 cells by modulating β1 integrin clustering.

Science.gov (United States)

Wang, Ruifei; Bi, Jiajia; Ampah, Khamal Kwesi; Zhang, Chunmei; Li, Ziyi; Jiao, Yang; Wang, Xiaoru; Ba, Xueqing; Zeng, Xianlu

2013-08-01

Cell adhesion and spreading require integrins-mediated cell-extracellular matrix interaction. Integrins function through binding to extracellular matrix and subsequent clustering to initiate focal adhesion formation and actin cytoskeleton rearrangement. Lipid raft, a liquid ordered plasma membrane microdomain, has been reported to play major roles in membrane motility by regulating cell surface receptor function. Here, we identified that lipid raft integrity was required for β1 integrin-mediated initial spreading of melanoma A375 cells on fibronectin. We found that lipid raft disruption with methyl-β-cyclodextrin led to the inability of focal adhesion formation and actin cytoskeleton rearrangement by preventing β1 integrin clustering. Furthermore, we explored the possible mechanism by which lipid raft regulates β1 integrin clustering and demonstrated that intact lipid raft could recruit and modify some adaptor proteins, such as talin, α-actinin, vinculin, paxillin and FAK. Lipid raft could regulate the location of these proteins in lipid raft fractions and facilitate their binding to β1 integrin, which may be crucial for β1 integrin clustering. We also showed that lipid raft disruption impaired A375 cell migration in both transwell and wound healing models. Together, these findings provide a new insight for the relationship between lipid raft and the regulation of integrins. Copyright © 2013 Elsevier Ltd. All rights reserved.

Association between tetrodotoxin resistant channels and lipid rafts regulates sensory neuron excitability.

Directory of Open Access Journals (Sweden)

Alessandro Pristerà

Full Text Available Voltage-gated sodium channels (VGSCs play a key role in the initiation and propagation of action potentials in neurons. Na(V1.8 is a tetrodotoxin (TTX resistant VGSC expressed in nociceptors, peripheral small-diameter neurons able to detect noxious stimuli. Na(V1.8 underlies the vast majority of sodium currents during action potentials. Many studies have highlighted a key role for Na(V1.8 in inflammatory and chronic pain models. Lipid rafts are microdomains of the plasma membrane highly enriched in cholesterol and sphingolipids. Lipid rafts tune the spatial and temporal organisation of proteins and lipids on the plasma membrane. They are thought to act as platforms on the membrane where proteins and lipids can be trafficked, compartmentalised and functionally clustered. In the present study we investigated Na(V1.8 sub-cellular localisation and explored the idea that it is associated with lipid rafts in nociceptors. We found that Na(V1.8 is distributed in clusters along the axons of DRG neurons in vitro and ex vivo. We also demonstrated, by biochemical and imaging studies, that Na(V1.8 is associated with lipid rafts along the sciatic nerve ex vivo and in DRG neurons in vitro. Moreover, treatments with methyl-β-cyclodextrin (MβCD and 7-ketocholesterol (7KC led to the dissociation between rafts and Na(V1.8. By calcium imaging we demonstrated that the lack of association between rafts and Na(V1.8 correlated with impaired neuronal excitability, highlighted by a reduction in the number of neurons able to conduct mechanically- and chemically-evoked depolarisations. These findings reveal the sub-cellular localisation of Na(V1.8 in nociceptors and highlight the importance of the association between Na(V1.8 and lipid rafts in the control of nociceptor excitability.

Differential association of the Na+/H+ Exchanger Regulatory Factor (NHERF) family of adaptor proteins with the raft- and the non-raft brush border membrane fractions of NHE3.

Science.gov (United States)

Sultan, Ayesha; Luo, Min; Yu, Qin; Riederer, Brigitte; Xia, Weiliang; Chen, Mingmin; Lissner, Simone; Gessner, Johannes E; Donowitz, Mark; Yun, C Chris; deJonge, Hugo; Lamprecht, Georg; Seidler, Ursula

2013-01-01

Trafficking, brush border membrane (BBM) retention, and signal-specific regulation of the Na+/H+ exchanger NHE3 is regulated by the Na+/H+ Exchanger Regulatory Factor (NHERF) family of PDZ-adaptor proteins, which enable the formation of multiprotein complexes. It is unclear, however, what determines signal specificity of these NHERFs. Thus, we studied the association of NHE3, NHERF1 (EBP50), NHERF2 (E3KARP), and NHERF3 (PDZK1) with lipid rafts in murine small intestinal BBM. Detergent resistant membranes ("lipid rafts") were isolated by floatation of Triton X-incubated small intestinal BBM from a variety of knockout mouse strains in an Optiprep step gradient. Acid-activated NHE3 activity was measured fluorometrically in BCECF-loaded microdissected villi, or by assessment of CO2/HCO3(-) mediated increase in fluid absorption in perfused jejunal loops of anethetized mice. NHE3 was found to partially associate with lipid rafts in the native BBM, and NHE3 raft association had an impact on NHE3 transport activity and regulation in vivo. NHERF1, 2 and 3 were differentially distributed to rafts and non-rafts, with NHERF2 being most raft-associated and NHERF3 entirely non-raft associated. NHERF2 expression enhanced the localization of NHE3 to membrane rafts. The use of acid sphingomyelinase-deficient mice, which have altered membrane lipid as well as lipid raft composition, allowed us to test the validity of the lipid raft concept in vivo. The differential association of the NHERFs with the raft-associated and the non-raft fraction of NHE3 in the brush border membrane is one component of the differential and signal-specific NHE3 regulation by the different NHERFs. © 2013 S. Karger AG, Basel.

Characterization of lipid rafts in human platelets using nuclear magnetic resonance: A pilot study

Directory of Open Access Journals (Sweden)

Joshua F. Ceñido

2017-07-01

Full Text Available Lipid microdomains (‘lipid rafts’ are plasma membrane subregions, enriched in cholesterol and glycosphingolipids, which participate dynamically in cell signaling and molecular trafficking operations. One strategy for the study of the physicochemical properties of lipid rafts in model membrane systems has been the use of nuclear magnetic resonance (NMR, but until now this spectroscopic method has not been considered a clinically relevant tool. We performed a proof-of-concept study to test the feasibility of using NMR to study lipid rafts in human tissues. Platelets were selected as a cost-effective and minimally invasive model system in which lipid rafts have previously been studied using other approaches. Platelets were isolated from plasma of medication-free adult research participants (n=13 and lysed with homogenization and sonication. Lipid-enriched fractions were obtained using a discontinuous sucrose gradient. Association of lipid fractions with GM1 ganglioside was tested using HRP-conjugated cholera toxin B subunit dot blot assays. 1H high resolution magic-angle spinning nuclear magnetic resonance (HRMAS NMR spectra obtained with single-pulse Bloch decay experiments yielded spectral linewidths and intensities as a function of temperature. Rates of lipid lateral diffusion that reported on raft size were measured with a two-dimensional stimulated echo longitudinal encode-decode NMR experiment. We found that lipid fractions at 10–35% sucrose density associated with GM1 ganglioside, a marker for lipid rafts. NMR spectra of the membrane phospholipids featured a prominent ‘centerband’ peak associated with the hydrocarbon chain methylene resonance at 1.3 ppm; the linewidth (full width at half-maximum intensity of this ‘centerband’ peak, together with the ratio of intensities between the centerband and ‘spinning sideband’ peaks, agreed well with values reported previously for lipid rafts in model membranes. Decreasing

Development of optimum design from static response of pile–raft interaction

DEFF Research Database (Denmark)

Taghavi Ghalesari, A; Barari, Amin; Fardad Amini, P

2015-01-01

Piled raft foundations are among the most commonly used support structures for offshore projects. When a raft foundation alone does not satisfy the design requirements, piles may be added to improve the ultimate load capacity and the settlement performance of the raft. In this study, design...... for the piled raft were highly influenced by the number of piles and the raft thickness. Optimal design configurations of piles for cohesive soils are discussed. Increasing the pile spacing decreased the pile butt load ratio by allowing for a more uniform load distribution between the piles....

Effects of RAFT Agent on the Selective Approach of Molecularly Imprinted Polymers

OpenAIRE

Asman, Saliza; Mohamad, Sharifah; Sarih, Norazilawati

2015-01-01

Two types of reversible addition-fragmentation chain transfer molecularly imprinted polymers (RAFT-MIPs) were synthesized using different monomers, which were methacrylic acid functionalized β-cyclodextrin (MAA-β-CD) and 2-hydroxyethyl methacrylate functionalized β-cyclodextrin (HEMA-β-CD), via reversible addition-fragmentation chain transfer (RAFT) polymerization, and were represented as RAFT-MIP(MAA-β-CD) and RAFT-MIP(HEMA-β-CD), respectively. Both RAFT-MIPs were systematically characterize...

A sensitivity analysis for a thermomechanical model of the Antarctic ice sheet and ice shelves

Science.gov (United States)

Baratelli, F.; Castellani, G.; Vassena, C.; Giudici, M.

2012-04-01

The outcomes of an ice sheet model depend on a number of parameters and physical quantities which are often estimated with large uncertainty, because of lack of sufficient experimental measurements in such remote environments. Therefore, the efforts to improve the accuracy of the predictions of ice sheet models by including more physical processes and interactions with atmosphere, hydrosphere and lithosphere can be affected by the inaccuracy of the fundamental input data. A sensitivity analysis can help to understand which are the input data that most affect the different predictions of the model. In this context, a finite difference thermomechanical ice sheet model based on the Shallow-Ice Approximation (SIA) and on the Shallow-Shelf Approximation (SSA) has been developed and applied for the simulation of the evolution of the Antarctic ice sheet and ice shelves for the last 200 000 years. The sensitivity analysis of the model outcomes (e.g., the volume of the ice sheet and of the ice shelves, the basal melt rate of the ice sheet, the mean velocity of the Ross and Ronne-Filchner ice shelves, the wet area at the base of the ice sheet) with respect to the model parameters (e.g., the basal sliding coefficient, the geothermal heat flux, the present-day surface accumulation and temperature, the mean ice shelves viscosity, the melt rate at the base of the ice shelves) has been performed by computing three synthetic numerical indices: two local sensitivity indices and a global sensitivity index. Local sensitivity indices imply a linearization of the model and neglect both non-linear and joint effects of the parameters. The global variance-based sensitivity index, instead, takes into account the complete variability of the input parameters but is usually conducted with a Monte Carlo approach which is computationally very demanding for non-linear complex models. Therefore, the global sensitivity index has been computed using a development of the model outputs in a

Raft River Geothermal Aquaculture Experiment. Phase II

Energy Technology Data Exchange (ETDEWEB)

Campbell, D.K.; Rose, F.L.; Kent, J.C.; Watson, L.R.; Sullivan, J.F.

1979-08-01

Channel catfish, tilapia and Malaysian prawns were cultured directly in geothermal water for approximately seven months at the Department of Energy, Raft River Geothermal Site, to evaluate the organisms throughout a grow-out cycle. Parameters evaluated included survival, growth, bioaccumulation of metals and fluoride, collagen synthesis, and bone calcium levels. Growth at Raft River was slightly lower than at a companion commercial facility at Buhl, Idaho, but was attributed to facility differences rather than an adverse impact of geothermal water. No significant differences were recorded between Raft River and Buhl fish for bone calcium or collagen concentrations. No significant accumulation of heavy metals by fish or prawns was recorded.

Global ice sheet/RSL simulations using the higher-order Ice Sheet System Model.

Science.gov (United States)

Larour, E. Y.; Ivins, E. R.; Adhikari, S.; Schlegel, N.; Seroussi, H. L.; Morlighem, M.

2017-12-01

Relative sea-level rise is driven by processes that are intimately linked to the evolution ofglacial areas and ice sheets in particular. So far, most Earth System models capable of projecting theevolution of RSL on decadal to centennial time scales have relied on offline interactions between RSL andice sheets. In particular, grounding line and calving front dynamics have not been modeled in a way that istightly coupled with Elasto-Static Adjustment (ESA) and/or Glacial-Isostatic Adjustment (GIA). Here, we presenta new simulation of the entire Earth System in which both Greenland and Antarctica ice sheets are tightly coupledto an RSL model that includes both ESA and GIA at resolutions and time scales compatible with processes suchas grounding line dynamics for Antarctica ice shelves and calving front dynamics for Greenland marine-terminatingglaciers. The simulations rely on the Ice Sheet System Model (ISSM) and show the impact of higher-orderice flow dynamics and coupling feedbacks between ice flow and RSL. We quantify the exact impact of ESA andGIA inclusion on grounding line evolution for large ice shelves such as the Ronne and Ross ice shelves, as well asthe Agasea Embayment ice streams, and demonstate how offline vs online RSL simulations diverge in the long run,and the consequences for predictions of sea-level rise.This work was performed at the California Institute of Technology's Jet Propulsion Laboratory undera contract with the National Aeronautics and Space Administration's Cryosphere Science Program.

The Potsdam Parallel Ice Sheet Model (PISM-PIK) - Part 1: Model description

Science.gov (United States)

Winkelmann, R.; Martin, M. A.; Haseloff, M.; Albrecht, T.; Bueler, E.; Khroulev, C.; Levermann, A.

2011-09-01

We present the Potsdam Parallel Ice Sheet Model (PISM-PIK), developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009). Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA) is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA) dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011) and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP). A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011).

Biomedical applications of polymers derived by reversible addition - fragmentation chain-transfer (RAFT).

Science.gov (United States)

Fairbanks, Benjamin D; Gunatillake, Pathiraja A; Meagher, Laurence

2015-08-30

RAFT- mediated polymerization, providing control over polymer length and architecture as well as facilitating post polymerization modification of end groups, has been applied to virtually every facet of biomedical materials research. RAFT polymers have seen particularly extensive use in drug delivery research. Facile generation of functional and telechelic polymers permits straightforward conjugation to many therapeutic compounds while synthesis of amphiphilic block copolymers via RAFT allows for the generation of self-assembled structures capable of carrying therapeutic payloads. With the large and growing body of literature employing RAFT polymers as drug delivery aids and vehicles, concern over the potential toxicity of RAFT derived polymers has been raised. While literature exploring this complication is relatively limited, the emerging consensus may be summed up in three parts: toxicity of polymers generated with dithiobenzoate RAFT agents is observed at high concentrations but not with polymers generated with trithiocarbonate RAFT agents; even for polymers generated with dithiobenzoate RAFT agents, most reported applications call for concentrations well below the toxicity threshold; and RAFT end-groups may be easily removed via any of a variety of techniques that leave the polymer with no intrinsic toxicity attributable to the mechanism of polymerization. The low toxicity of RAFT-derived polymers and the ability to remove end groups via straightforward and scalable processes make RAFT technology a valuable tool for practically any application in which a polymer of defined molecular weight and architecture is desired. Copyright © 2015. Published by Elsevier B.V.

Functional Proteomic Analysis of Lipid Raft Kinase Complexes

Science.gov (United States)

2009-08-01

0.0 623 + + + + + IPI00219425 PVR Isoform Beta of Poliovirus receptor precursor Non-raft 9 86/372 + + + + + 19.0 1.5 12.7 17 3 5.7 21 0 70.0 1st EXP...Counts No. Prob. Both Acc.Number Gene Symbol Description Fraction Uni. Pep. IPI00219425 PVR Isoform Beta of Poliovirus receptor precursor Raft 2 25...372 + + 1.0 0.0 3.3 1 0 3.3 1 0 3.3 624 + + + + + IPI00022661 PVRL2 Isoform Delta of Poliovirus receptor-related protein 2 precursor Non-raft 7 92/538

Ice-sheet modelling accelerated by graphics cards

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Brædstrup, Christian Fredborg; Damsgaard, Anders; Egholm, David Lundbek

2014-11-01

Studies of glaciers and ice sheets have increased the demand for high performance numerical ice flow models over the past decades. When exploring the highly non-linear dynamics of fast flowing glaciers and ice streams, or when coupling multiple flow processes for ice, water, and sediment, researchers are often forced to use super-computing clusters. As an alternative to conventional high-performance computing hardware, the Graphical Processing Unit (GPU) is capable of massively parallel computing while retaining a compact design and low cost. In this study, we present a strategy for accelerating a higher-order ice flow model using a GPU. By applying the newest GPU hardware, we achieve up to 180× speedup compared to a similar but serial CPU implementation. Our results suggest that GPU acceleration is a competitive option for ice-flow modelling when compared to CPU-optimised algorithms parallelised by the OpenMP or Message Passing Interface (MPI) protocols.

A sea ice model for the marginal ice zone with an application to the Greenland Sea

DEFF Research Database (Denmark)

Pedersen, Leif Toudal; Coon, Max D.

2004-01-01

A model is presented that describes the formation, transport, and desalinization of frazil and pancake ice as it is formed in marginal seas. This model uses as input the total ice concentration evaluated from Special Sensor Microwave Imager and wind speed and direction. The model calculates...... the areal concentration, thickness, volume concentration, and salinity of frazil ice as well as the areal concentration, thickness, and salinity of pancakes. A simple parameterization for the Odden region of the Greenland Sea is presented. The model is run for the winter of 1996-1997. There are direct...... observations of the thickness and salinity of pancakes and the volume concentration of frazil ice to compare with the model. The model results compare very well with the measured data. This new ice model can be tuned to work in marginal seas elsewhere to calculate ice thickness, motion, and brine rejection...

SPH Modelling of Sea-ice Pack Dynamics

Science.gov (United States)

Staroszczyk, Ryszard

2017-12-01

The paper is concerned with the problem of sea-ice pack motion and deformation under the action of wind and water currents. Differential equations describing the dynamics of ice, with its very distinct mateFfigrial responses in converging and diverging flows, express the mass and linear momentum balances on the horizontal plane (the free surface of the ocean). These equations are solved by the fully Lagrangian method of smoothed particle hydrodynamics (SPH). Assuming that the ice behaviour can be approximated by a non-linearly viscous rheology, the proposed SPH model has been used to simulate the evolution of a sea-ice pack driven by wind drag stresses. The results of numerical simulations illustrate the evolution of an ice pack, including variations in ice thickness and ice area fraction in space and time. The effects of different initial ice pack configurations and of different conditions assumed at the coast-ice interface are examined. In particular, the SPH model is applied to a pack flow driven by a vortex wind to demonstrate how well the Lagrangian formulation can capture large deformations and displacements of sea ice.

Calibration of sea ice dynamic parameters in an ocean-sea ice model using an ensemble Kalman filter

Science.gov (United States)

Massonnet, F.; Goosse, H.; Fichefet, T.; Counillon, F.

2014-07-01

The choice of parameter values is crucial in the course of sea ice model development, since parameters largely affect the modeled mean sea ice state. Manual tuning of parameters will soon become impractical, as sea ice models will likely include more parameters to calibrate, leading to an exponential increase of the number of possible combinations to test. Objective and automatic methods for parameter calibration are thus progressively called on to replace the traditional heuristic, "trial-and-error" recipes. Here a method for calibration of parameters based on the ensemble Kalman filter is implemented, tested and validated in the ocean-sea ice model NEMO-LIM3. Three dynamic parameters are calibrated: the ice strength parameter P*, the ocean-sea ice drag parameter Cw, and the atmosphere-sea ice drag parameter Ca. In twin, perfect-model experiments, the default parameter values are retrieved within 1 year of simulation. Using 2007-2012 real sea ice drift data, the calibration of the ice strength parameter P* and the oceanic drag parameter Cw improves clearly the Arctic sea ice drift properties. It is found that the estimation of the atmospheric drag Ca is not necessary if P* and Cw are already estimated. The large reduction in the sea ice speed bias with calibrated parameters comes with a slight overestimation of the winter sea ice areal export through Fram Strait and a slight improvement in the sea ice thickness distribution. Overall, the estimation of parameters with the ensemble Kalman filter represents an encouraging alternative to manual tuning for ocean-sea ice models.

Coupling of climate models and ice sheet models by surface mass balance gradients: application to the Greenland Ice Sheet

Directory of Open Access Journals (Sweden)

M. M. Helsen

2012-03-01

Full Text Available It is notoriously difficult to couple surface mass balance (SMB results from climate models to the changing geometry of an ice sheet model. This problem is traditionally avoided by using only accumulation from a climate model, and parameterizing the meltwater run-off as a function of temperature, which is often related to surface elevation (H_s. In this study, we propose a new strategy to calculate SMB, to allow a direct adjustment of SMB to a change in ice sheet topography and/or a change in climate forcing. This method is based on elevational gradients in the SMB field as computed by a regional climate model. Separate linear relations are derived for ablation and accumulation, using pairs of H_s and SMB within a minimum search radius. The continuously adjusting SMB forcing is consistent with climate model forcing fields, also for initially non-glaciated areas in the peripheral areas of an ice sheet. When applied to an asynchronous coupled ice sheet – climate model setup, this method circumvents traditional temperature lapse rate assumptions. Here we apply it to the Greenland Ice Sheet (GrIS. Experiments using both steady-state forcing and glacial-interglacial forcing result in realistic ice sheet reconstructions.

Reducing uncertainty in high-resolution sea ice models.

Energy Technology Data Exchange (ETDEWEB)

Peterson, Kara J.; Bochev, Pavel Blagoveston

2013-07-01

Arctic sea ice is an important component of the global climate system, reflecting a significant amount of solar radiation, insulating the ocean from the atmosphere and influencing ocean circulation by modifying the salinity of the upper ocean. The thickness and extent of Arctic sea ice have shown a significant decline in recent decades with implications for global climate as well as regional geopolitics. Increasing interest in exploration as well as climate feedback effects make predictive mathematical modeling of sea ice a task of tremendous practical import. Satellite data obtained over the last few decades have provided a wealth of information on sea ice motion and deformation. The data clearly show that ice deformation is focused along narrow linear features and this type of deformation is not well-represented in existing models. To improve sea ice dynamics we have incorporated an anisotropic rheology into the Los Alamos National Laboratory global sea ice model, CICE. Sensitivity analyses were performed using the Design Analysis Kit for Optimization and Terascale Applications (DAKOTA) to determine the impact of material parameters on sea ice response functions. Two material strength parameters that exhibited the most significant impact on responses were further analyzed to evaluate their influence on quantitative comparisons between model output and data. The sensitivity analysis along with ten year model runs indicate that while the anisotropic rheology provides some benefit in velocity predictions, additional improvements are required to make this material model a viable alternative for global sea ice simulations.

Analysis of lipid raft molecules in the living brain slices.

Science.gov (United States)

Kotani, Norihiro; Nakano, Takanari; Ida, Yui; Ito, Rina; Hashizume, Miki; Yamaguchi, Arisa; Seo, Makoto; Araki, Tomoyuki; Hojo, Yasushi; Honke, Koichi; Murakoshi, Takayuki

2017-08-24

Neuronal plasma membrane has been thought to retain a lot of lipid raft components which play important roles in the neural function. Although the biochemical analyses of lipid raft using brain tissues have been extensively carried out in the past 20 years, many of their experimental conditions do not coincide with those of standard neuroscience researches such as neurophysiology and neuropharmacology. Hence, the physiological methods for lipid raft analysis that can be compatible with general neuroscience have been required. Herein, we developed a system to physiologically analyze ganglioside GM1-enriched lipid rafts in brain tissues using the "Enzyme-Mediated Activation of Radical Sources (EMARS)" method that we reported (Kotani N. et al. Proc. Natl. Acad. Sci. U S A 105, 7405-7409 (2008)). The EMARS method was applied to acute brain slices prepared from mouse brains in aCSF solution using the EMARS probe, HRP-conjugated cholera toxin subunit B, which recognizes ganglioside GM1. The membrane molecules present in the GM1-enriched lipid rafts were then labeled with fluorescein under the physiological condition. The fluorescein-tagged lipid raft molecules called "EMARS products" distributed differentially among various parts of the brain. On the other hand, appreciable differences were not detected among segments along the longitudinal axis of the hippocampus. We further developed a device to label the lipid raft molecules in acute hippocampal slices under two different physiological conditions to detect dynamics of the lipid raft molecules during neural excitation. Using this device, several cell membrane molecules including Thy1, known as a lipid raft resident molecule in neurons, were confirmed by the EMARS method in living hippocampal slices. Copyright © 2017 Elsevier Ltd. All rights reserved.

Modeling Commercial Turbofan Engine Icing Risk With Ice Crystal Ingestion

Science.gov (United States)

Jorgenson, Philip C. E.; Veres, Joseph P.

2013-01-01

The occurrence of ice accretion within commercial high bypass aircraft turbine engines has been reported under certain atmospheric conditions. Engine anomalies have taken place at high altitudes that have been attributed to ice crystal ingestion, partially melting, and ice accretion on the compression system components. The result was degraded engine performance, and one or more of the following: loss of thrust control (roll back), compressor surge or stall, and flameout of the combustor. As ice crystals are ingested into the fan and low pressure compression system, the increase in air temperature causes a portion of the ice crystals to melt. It is hypothesized that this allows the ice-water mixture to cover the metal surfaces of the compressor stationary components which leads to ice accretion through evaporative cooling. Ice accretion causes a blockage which subsequently results in the deterioration in performance of the compressor and engine. The focus of this research is to apply an engine icing computational tool to simulate the flow through a turbofan engine and assess the risk of ice accretion. The tool is comprised of an engine system thermodynamic cycle code, a compressor flow analysis code, and an ice particle melt code that has the capability of determining the rate of sublimation, melting, and evaporation through the compressor flow path, without modeling the actual ice accretion. A commercial turbofan engine which has previously experienced icing events during operation in a high altitude ice crystal environment has been tested in the Propulsion Systems Laboratory (PSL) altitude test facility at NASA Glenn Research Center. The PSL has the capability to produce a continuous ice cloud which are ingested by the engine during operation over a range of altitude conditions. The PSL test results confirmed that there was ice accretion in the engine due to ice crystal ingestion, at the same simulated altitude operating conditions as experienced previously in

Lipid rafts generate digital-like signal transduction in cell plasma membranes.

Science.gov (United States)

Suzuki, Kenichi G N

2012-06-01

Lipid rafts are meso-scale (5-200 nm) cell membrane domains where signaling molecules assemble and function. However, due to their dynamic nature, it has been difficult to unravel the mechanism of signal transduction in lipid rafts. Recent advanced imaging techniques have revealed that signaling molecules are frequently, but transiently, recruited to rafts with the aid of protein-protein, protein-lipid, and/or lipid-lipid interactions. Individual signaling molecules within the raft are activated only for a short period of time. Immobilization of signaling molecules by cytoskeletal actin filaments and scaffold proteins may facilitate more efficient signal transmission from rafts. In this review, current opinions of how the transient nature of molecular interactions in rafts generates digital-like signal transduction in cell membranes, and the benefits this phenomenon provides, are discussed. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Modelling the Antarctic Ice Sheet

DEFF Research Database (Denmark)

Pedersen, Jens Olaf Pepke; Holm, A.

2015-01-01

to sea level high stands during past interglacial periods. A number of AIS models have been developed and applied to try to understand the workings of the AIS and to form a robust basis for future projections of the AIS contribution to sea level change. The recent DCESS (Danish Center for Earth System......The Antarctic ice sheet is a major player in the Earth’s climate system and is by far the largest depository of fresh water on the planet. Ice stored in the Antarctic ice sheet (AIS) contains enough water to raise sea level by about 58 m, and ice loss from Antarctica contributed significantly...

Wave-induced stress and breaking of sea ice in a coupled hydrodynamic discrete-element wave-ice model

Science.gov (United States)

Herman, Agnieszka

2017-11-01

In this paper, a coupled sea ice-wave model is developed and used to analyze wave-induced stress and breaking in sea ice for a range of wave and ice conditions. The sea ice module is a discrete-element bonded-particle model, in which ice is represented as cuboid grains floating on the water surface that can be connected to their neighbors by elastic joints. The joints may break if instantaneous stresses acting on them exceed their strength. The wave module is based on an open-source version of the Non-Hydrostatic WAVE model (NHWAVE). The two modules are coupled with proper boundary conditions for pressure and velocity, exchanged at every wave model time step. In the present version, the model operates in two dimensions (one vertical and one horizontal) and is suitable for simulating compact ice in which heave and pitch motion dominates over surge. In a series of simulations with varying sea ice properties and incoming wavelength it is shown that wave-induced stress reaches maximum values at a certain distance from the ice edge. The value of maximum stress depends on both ice properties and characteristics of incoming waves, but, crucially for ice breaking, the location at which the maximum occurs does not change with the incoming wavelength. Consequently, both regular and random (Jonswap spectrum) waves break the ice into floes with almost identical sizes. The width of the zone of broken ice depends on ice strength and wave attenuation rates in the ice.

Erythropoietin Receptor Signaling Is Membrane Raft Dependent

Science.gov (United States)

McGraw, Kathy L.; Fuhler, Gwenny M.; Johnson, Joseph O.; Clark, Justine A.; Caceres, Gisela C.; Sokol, Lubomir; List, Alan F.

2012-01-01

Upon erythropoietin (Epo) engagement, Epo-receptor (R) homodimerizes to activate JAK2 and Lyn, which phosphorylate STAT5. Although recent investigations have identified key negative regulators of Epo-R signaling, little is known about the role of membrane localization in controlling receptor signal fidelity. Here we show a critical role for membrane raft (MR) microdomains in creation of discrete signaling platforms essential for Epo-R signaling. Treatment of UT7 cells with Epo induced MR assembly and coalescence. Confocal microscopy showed that raft aggregates significantly increased after Epo stimulation (mean, 4.3±1.4(SE) vs. 25.6±3.2 aggregates/cell; p≤0.001), accompanied by a >3-fold increase in cluster size (p≤0.001). Raft fraction immunoblotting showed Epo-R translocation to MR after Epo stimulation and was confirmed by fluorescence microscopy in Epo stimulated UT7 cells and primary erythroid bursts. Receptor recruitment into MR was accompanied by incorporation of JAK2, Lyn, and STAT5 and their activated forms. Raft disruption by cholesterol depletion extinguished Epo induced Jak2, STAT5, Akt and MAPK phosphorylation in UT7 cells and erythroid progenitors. Furthermore, inhibition of the Rho GTPases Rac1 or RhoA blocked receptor recruitment into raft fractions, indicating a role for these GTPases in receptor trafficking. These data establish a critical role for MR in recruitment and assembly of Epo-R and signal intermediates into discrete membrane signaling units. PMID:22509308

Application of GRACE to the Evaluation of an Ice Flow Model of the Greenland Ice Sheet

Science.gov (United States)

Schlegel, N.; Wiese, D. N.; Watkins, M. M.; Larour, E. Y.; Box, J. E.; Fettweis, X.; van den Broeke, M. R.; Morlighem, M.; Boening, C.; Seroussi, H. L.

2014-12-01

Quantifying Greenland's future contribution to sea level rise is a challenging task and requires accurate estimates of ice flow sensitivity to climate change. Transient ice flow models are promising tools for estimating future ice sheet behavior. However, confidence in these types of future projections is low, especially because evaluation of model historical runs is so challenging due to the scarcity of continental-wide data for validation. For more than a decade, NASA's GRACE has continuously acquired time-variable measurements of the Earth's gravity field and has provided unprecedented surveillance of mass balance of the ice sheets, offering an opportunity for ice sheet model evaluation. Here, we take advantage of a new high-resolution (~300 km) monthly mascon solution for the purpose of mass balance comparison with an independent, historical ice flow model simulation using the Ice Sheet System Model (ISSM). The comparison highlights which regions of the ice sheet differ most from GRACE. Investigation of regional differences in trends and seasonal amplitudes between simulations forced with three different Regional Climate Model (RCM)-based estimates of surface mass balance (SMB) allows us to make conclusions about the relative contributions of various error sources in the model hindcast. This study constitutes the first regional comparison of GRACE data and an ice sheet model. Conclusions will aid in the improvement of RCM SMB estimates as well as ice sheet simulation estimates of present and future rates of sea level rise. This work was performed at the California Institute of Technology's Jet Propulsion Laboratory under a contract with the National Aeronautics and Space Administration's Cryosphere Program and President's and Director's Fund Program.

Level-Ice Melt Ponds in the Los Alamos Sea Ice Model, CICE

Science.gov (United States)

2012-12-06

terms obtained using the Bitz and Lips- comb (1999) thermodynamic model. The thickness distribution ( Thorndike et al., 1975) employs 5 ice thickness...D.L., 2004. A model of melt pond evolution on sea ice. J. Geophys. Res. 109, C12007. http://dx.doi.org/10.1029/2004JC002361. Thorndike , A.S., Rothrock

Cordilleran Ice Sheet meltwater delivery to the coastal waters of the northeast Pacific Ocean

Science.gov (United States)

Hendy, I. L.; Taylor, M.; Gombiner, J. H.; Hemming, S. R.; Bryce, J. G.; Blichert-Toft, J.

2014-12-01

Cordilleran Ice Sheet (CIS) delivered meltwater to the NE Pacific Ocean off BC and WA via glacial lake outburst floods (GLOFs), ice rafting and subglacial meltwater discharge. A deglacial glaciomarine sedimentation record is preserved in the well dated ~50-kyr core MD02-2496 (48˚58.47' N, 127˚02.14' W, water depth 1243 m), collected off Vancouver Island. To understand the history of the relationship between the CIS, climate and meltwater discharge, high resolution, multi-proxy geochemical records from the interval that captures the Fraser Glaciation (~30-10 ka) were generated. These proxies include Mg/Ca temperatures and δ18Oseawater from planktonic foraminiferal sp. N. pachyderma and G. bulloides, elemental and organic carbon (Corg) geochemistry of bulk sediments, ɛNd and K/Ar dating of the rose by > 3°C to 10-12°C in association with an additional IRD event at ~14.8 ka sourced from a ~75 Ma felsic volcanic source, likely the Southern Coast Plutonic Complex. At no point in the δ18Oseawater reconstruction is an obvious meltwater isotopic signature recorded despite the sedimentary evidence for both ice rafting and outburst flooding. Thus CIS meltwater likely entered the NE Pacific Ocean via hyperpycnal flow.

Modelling ice microphysics of mixed-phase clouds

Science.gov (United States)

Ahola, J.; Raatikainen, T.; Tonttila, J.; Romakkaniemi, S.; Kokkola, H.; Korhonen, H.

2017-12-01

The low-level Arctic mixed-phase clouds have a significant role for the Arctic climate due to their ability to absorb and reflect radiation. Since the climate change is amplified in polar areas, it is vital to apprehend the mixed-phase cloud processes. From a modelling point of view, this requires a high spatiotemporal resolution to capture turbulence and the relevant microphysical processes, which has shown to be difficult.In order to solve this problem about modelling mixed-phase clouds, a new ice microphysics description has been developed. The recently published large-eddy simulation cloud model UCLALES-SALSA offers a good base for a feasible solution (Tonttila et al., Geosci. Mod. Dev., 10:169-188, 2017). The model includes aerosol-cloud interactions described with a sectional SALSA module (Kokkola et al., Atmos. Chem. Phys., 8, 2469-2483, 2008), which represents a good compromise between detail and computational expense.Newly, the SALSA module has been upgraded to include also ice microphysics. The dynamical part of the model is based on well-known UCLA-LES model (Stevens et al., J. Atmos. Sci., 56, 3963-3984, 1999) which can be used to study cloud dynamics on a fine grid.The microphysical description of ice is sectional and the included processes consist of formation, growth and removal of ice and snow particles. Ice cloud particles are formed by parameterized homo- or heterogeneous nucleation. The growth mechanisms of ice particles and snow include coagulation and condensation of water vapor. Autoconversion from cloud ice particles to snow is parameterized. The removal of ice particles and snow happens by sedimentation and melting.The implementation of ice microphysics is tested by initializing the cloud simulation with atmospheric observations from the Indirect and Semi-Direct Aerosol Campaign (ISDAC). The results are compared to the model results shown in the paper of Ovchinnikov et al. (J. Adv. Model. Earth Syst., 6, 223-248, 2014) and they show a good

Slush Fund: Modeling the Multiphase Physics of Oceanic Ices

Science.gov (United States)

Buffo, J.; Schmidt, B. E.

2016-12-01

The prevalence of ice interacting with an ocean, both on Earth and throughout the solar system, and its crucial role as the mediator of exchange between the hydrosphere below and atmosphere above, have made quantifying the thermodynamic, chemical, and physical properties of the ice highly desirable. While direct observations of these quantities exist, their scarcity increases with the difficulty of obtainment; the basal surfaces of terrestrial ice shelves remain largely unexplored and the icy interiors of moons like Europa and Enceladus have never been directly observed. Our understanding of these entities thus relies on numerical simulation, and the efficacy of their incorporation into larger systems models is dependent on the accuracy of these initial simulations. One characteristic of seawater, likely shared by the oceans of icy moons, is that it is a solution. As such, when it is frozen a majority of the solute is rejected from the forming ice, concentrating in interstitial pockets and channels, producing a two-component reactive porous media known as a mushy layer. The multiphase nature of this layer affects the evolution and dynamics of the overlying ice mass. Additionally ice can form in the water column and accrete onto the basal surface of these ice masses via buoyancy driven sedimentation as frazil or platelet ice. Numerical models hoping to accurately represent ice-ocean interactions should include the multiphase behavior of these two phenomena. While models of sea ice have begun to incorporate multiphase physics into their capabilities, no models of ice shelves/shells explicitly account for the two-phase behavior of the ice-ocean interface. Here we present a 1D multiphase model of floating oceanic ice that includes parameterizations of both density driven advection within the `mushy layer' and buoyancy driven sedimentation. The model is validated against contemporary sea ice models and observational data. Environmental stresses such as supercooling and

Progressive friction mobilization and enhanced Janssen's screening in confined granular rafts

Science.gov (United States)

Saavedra V., Oscar; Elettro, Hervé; Melo, Francisco

2018-04-01

Confined two-dimensional assemblies of floating particles, known as granular rafts, are prone to develop a highly nonlinear response under compression. Here we investigate the transition to the friction-dominated jammed state and map the gradual development of the internal stress profile with flexible pressure sensors distributed along the raft surface. Surprisingly, we observe that the surface stress screening builds up much more slowly than previously thought and that the typical screening distance later dramatically decreases. We explain this behavior in terms of progressive friction mobilization, where the full amplitude of the frictional forces is only reached after a macroscopic local displacement. At further stages of compression, rafts of large length-to-width aspect ratio experience much stronger screenings than the full mobilization limit described by the Janssen's model. We solve this paradox using a simple mathematical analysis and show that such enhanced screening can be attributed to a localized compaction front, essentially shielding the far field from compressive stresses.

Modifying Lipid Rafts Promotes Regeneration and Functional Recovery

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Nardos G. Tassew

2014-08-01

Full Text Available Ideal strategies to ameliorate CNS damage should promote both neuronal survival and axon regeneration. The receptor Neogenin promotes neuronal apoptosis. Its ligand prevents death, but the resulting repulsive guidance molecule a (RGMa-Neogenin interaction also inhibits axonal growth, countering any prosurvival benefits. Here, we explore strategies to inhibit Neogenin, thus simultaneously enhancing survival and regeneration. We show that bone morphogenetic protein (BMP and RGMa-dependent recruitment of Neogenin into lipid rafts requires an interaction between RGMa and Neogenin subdomains. RGMa or Neogenin peptides that prevent this interaction, BMP inhibition by Noggin, or reduction of membrane cholesterol all block Neogenin raft localization, promote axon outgrowth, and prevent neuronal apoptosis. Blocking Neogenin raft association influences axonal pathfinding, enhances survival in the developing CNS, and promotes survival and regeneration in the injured adult optic nerve and spinal cord. Moreover, lowering cholesterol disrupts rafts and restores locomotor function after spinal cord injury. These data reveal a unified strategy to promote both survival and regeneration in the CNS.

Modeling the Fracture of Ice Sheets on Parallel Computers

Energy Technology Data Exchange (ETDEWEB)

Waisman, Haim [Columbia Univ., New York, NY (United States); Tuminaro, Ray [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2013-10-10

The objective of this project was to investigate the complex fracture of ice and understand its role within larger ice sheet simulations and global climate change. This objective was achieved by developing novel physics based models for ice, novel numerical tools to enable the modeling of the physics and by collaboration with the ice community experts. At the present time, ice fracture is not explicitly considered within ice sheet models due in part to large computational costs associated with the accurate modeling of this complex phenomena. However, fracture not only plays an extremely important role in regional behavior but also influences ice dynamics over much larger zones in ways that are currently not well understood. To this end, our research findings through this project offers significant advancement to the field and closes a large gap of knowledge in understanding and modeling the fracture of ice sheets in the polar regions. Thus, we believe that our objective has been achieved and our research accomplishments are significant. This is corroborated through a set of published papers, posters and presentations at technical conferences in the field. In particular significant progress has been made in the mechanics of ice, fracture of ice sheets and ice shelves in polar regions and sophisticated numerical methods that enable the solution of the physics in an efficient way.

Evidence for a dynamic East Antarctic ice sheet during the mid-Miocene climate transition

Science.gov (United States)

Pierce, Elizabeth L.; van de Flierdt, Tina; Williams, Trevor; Hemming, Sidney R.; Cook, Carys P.; Passchier, Sandra

2017-11-01

The East Antarctic ice sheet underwent a major expansion during the Mid-Miocene Climate Transition, around 14 Ma, lowering sea level by ∼60 m. However, direct or indirect evidence of where changes in the ice sheet occurred is limited. Here we present new insights on timing and locations of ice sheet change from two drill sites offshore East Antarctica. IODP Site U1356, Wilkes Land, and ODP Site 1165, Prydz Bay are located adjacent to two major ice drainage areas, the Wilkes Subglacial Basin and the Lambert Graben. Ice-rafted detritus (IRD), including dropstones, was deposited in concentrations far exceeding those known in the rest of the Miocene succession at both sites between 14.1 and 13.8 Ma, indicating that large amounts of IRD-bearing icebergs were calved from independent drainage basins during this relatively short interval. At Site U1356, the IRD was delivered in distinct pulses, suggesting that the overall ice advance was punctuated by short periods of ice retreat in the Wilkes Subglacial Basin. Provenance analysis of the mid-Miocene IRD and fine-grained sediments provides additional insights on the movement of the ice margin and subglacial geology. At Site U1356, the dominant 40Ar/39Ar thermochronological age of the ice-rafted hornblende grains is 1400-1550 Ma, differing from the majority of recent IRD in the area, from which we infer an inland source area of this thermochronological age extending along the eastern part of the Adélie Craton, which forms the western side of the Wilkes Subglacial Basin. Neodymium isotopic compositions from the terrigenous fine fraction at Site U1356 imply that the ice margin periodically expanded from high ground well into the Wilkes Subglacial Basin during periods of MMCT ice growth. At Site 1165, MMCT pebble-sized IRD are sourced from both the local Lambert Graben and the distant Aurora Subglacial Basin drainage area. Together, the occurrence and provenance of the IRD and glacially-eroded sediment at these two marine

Formulation and optimisation of raft-forming chewable tablets containing H2 antagonist.

Science.gov (United States)

Prajapati, Shailesh T; Mehta, Anant P; Modhia, Ishan P; Patel, Chhagan N

2012-10-01

The purpose of this research work was to formulate raft-forming chewable tablets of H2 antagonist (Famotidine) using a raft-forming agent along with an antacid- and gas-generating agent. Tablets were prepared by wet granulation and evaluated for raft strength, acid neutralisation capacity, weight variation, % drug content, thickness, hardness, friability and in vitro drug release. Various raft-forming agents were used in preliminary screening. A 2(3) full-factorial design was used in the present study for optimisation. The amount of sodium alginate, amount of calcium carbonate and amount sodium bicarbonate were selected as independent variables. Raft strength, acid neutralisation capacity and drug release at 30 min were selected as responses. Tablets containing sodium alginate were having maximum raft strength as compared with other raft-forming agents. Acid neutralisation capacity and in vitro drug release of all factorial batches were found to be satisfactory. The F5 batch was optimised based on maximum raft strength and good acid neutralisation capacity. Drug-excipient compatibility study showed no interaction between the drug and excipients. Stability study of the optimised formulation showed that the tablets were stable at accelerated environmental conditions. It was concluded that raft-forming chewable tablets prepared using an optimum amount of sodium alginate, calcium carbonate and sodium bicarbonate could be an efficient dosage form in the treatment of gastro oesophageal reflux disease.

Surface chemistry of lipid raft and amyloid Aβ (1-40) Langmuir monolayer.

Science.gov (United States)

Thakur, Garima; Pao, Christine; Micic, Miodrag; Johnson, Sheba; Leblanc, Roger M

2011-10-15

Lipid rafts being rich in cholesterol and sphingolipids are considered to provide ordered lipid environment in the neuronal membranes, where it is hypothesized that the cleavage of amyloid precursor protein (APP) to Aβ (1-40) and Aβ (1-42) takes place. It is highly likely that the interaction of lipid raft components like cholesterol, sphingomylein or GM1 leads to nucleation of Aβ and results in aggregation or accumulation of amyloid plaques. One has investigated surface pressure-area isotherms of the lipid raft and Aβ (1-40) Langmuir monolayer. The compression-decompression cycles and the stability of the lipid raft Langmuir monolayer are crucial parameters for the investigation of interaction of Aβ (1-40) with the lipid raft Langmuir monolayer. It was revealed that GM1 provides instability to the lipid raft Langmuir monolayer. Adsorption of Aβ (1-40) onto the lipid raft Langmuir monolayer containing neutral (POPC) or negatively charged phospholipid (DPPG) was examined. The adsorption isotherms revealed that the concentration of cholesterol was important for adsorption of Aβ (1-40) onto the lipid raft Langmuir monolayer containing POPC whereas for the lipid raft Langmuir monolayer containing DPPG:cholesterol or GM1 did not play any role. In situ UV-vis absorption spectroscopy supported the interpretation of results for the adsorption isotherms. Copyright © 2011 Elsevier B.V. All rights reserved.

Lenalidomide induces lipid raft assembly to enhance erythropoietin receptor signaling in myelodysplastic syndrome progenitors.

Science.gov (United States)

McGraw, Kathy L; Basiorka, Ashley A; Johnson, Joseph O; Clark, Justine; Caceres, Gisela; Padron, Eric; Heaton, Ruth; Ozawa, Yukiyasu; Wei, Sheng; Sokol, Lubomir; List, Alan F

2014-01-01

Anemia remains the principal management challenge for patients with lower risk Myelodysplastic Syndromes (MDS). Despite appropriate cytokine production and cellular receptor display, erythropoietin receptor (EpoR) signaling is impaired. We reported that EpoR signaling is dependent upon receptor localization within lipid raft microdomains, and that disruption of raft integrity abolishes signaling capacity. Here, we show that MDS erythroid progenitors display markedly diminished raft assembly and smaller raft aggregates compared to normal controls (p = 0.005, raft number; p = 0.023, raft size). Because lenalidomide triggers raft coalescence in T-lymphocytes promoting immune synapse formation, we assessed effects of lenalidomide on raft assembly in MDS erythroid precursors and UT7 cells. Lenalidomide treatment rapidly induced lipid raft formation accompanied by EpoR recruitment into raft fractions together with STAT5, JAK2, and Lyn kinase. The JAK2 phosphatase, CD45, a key negative regulator of EpoR signaling, was displaced from raft fractions. Lenalidomide treatment prior to Epo stimulation enhanced both JAK2 and STAT5 phosphorylation in UT7 and primary MDS erythroid progenitors, accompanied by increased STAT5 DNA binding in UT7 cells, and increased erythroid colony forming capacity in both UT7 and primary cells. Raft induction was associated with F-actin polymerization, which was blocked by Rho kinase inhibition. These data indicate that deficient raft integrity impairs EpoR signaling, and provides a novel strategy to enhance EpoR signal fidelity in non-del(5q) MDS.

Polynyas in a dynamic-thermodynamic sea-ice model

Directory of Open Access Journals (Sweden)

E. Ö. Ólason

2010-04-01

Full Text Available The representation of polynyas in viscous-plastic dynamic-thermodynamic sea-ice models is studied in a simplified test domain, in order to give recommendations about parametrisation choices. Bjornsson et al. (2001 validated their dynamic-thermodynamic model against a polynya flux model in a similar setup and we expand on that work here, testing more sea-ice rheologies and new-ice thickness formulations. The two additional rheologies tested give nearly identical results whereas the two new-ice thickness parametrisations tested give widely different results. Based on our results we argue for using the new-ice thickness parametrisation of Hibler (1979. We also implement a new parametrisation for the parameter h⁰ from Hibler's scheme, based on ideas from a collection depth parametrisation for flux polynya models.

Well-Defined Macromolecules Using Horseradish Peroxidase as a RAFT Initiase.

Science.gov (United States)

Danielson, Alex P; Bailey-Van Kuren, Dylan; Lucius, Melissa E; Makaroff, Katherine; Williams, Cameron; Page, Richard C; Berberich, Jason A; Konkolewicz, Dominik

2016-02-01

Enzymatic catalysis and control over macromolecular architectures from reversible addition-fragmentation chain transfer polymerization (RAFT) are combined to give a new method of making polymers. Horseradish peroxidase (HRP) is used to catalytically generate radicals using hydrogen peroxide and acetylacetone as a mediator. RAFT is used to control the polymer structure. HRP catalyzed RAFT polymerization gives acrylate and acrylamide polymers with relatively narrow molecular weight distributions. The polymerization is rapid, typically exceeding 90% monomer conversion in 30 min. Complex macromolecular architectures including a block copolymer and a protein-polymer conjugate are synthesized using HRP to catalytically initiate RAFT polymerization. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Docosahexaenoic acid modifies the clustering and size of lipid rafts and the lateral organization and surface expression of MHC class I of EL4 cells.

Science.gov (United States)

Shaikh, Saame Raza; Rockett, Benjamin Drew; Salameh, Muhammad; Carraway, Kristen

2009-09-01

An emerging molecular mechanism by which docosahexaenoic acid (DHA) exerts its effects is modification of lipid raft organization. The biophysical model, based on studies with liposomes, shows that DHA avoids lipid rafts because of steric incompatibility between DHA and cholesterol. The model predicts that DHA does not directly modify rafts; rather, it incorporates into nonrafts to modify the lateral organization and/or conformation of membrane proteins, such as the major histocompatibility complex (MHC) class I. Here, we tested predictions of the model at a cellular level by incorporating oleic acid, eicosapentaenoic acid (EPA), and DHA, compared with a bovine serum albumin (BSA) control, into the membranes of EL4 cells. Quantitative microscopy showed that DHA, but not EPA, treatment, relative to the BSA control diminished lipid raft clustering and increased their size. Approximately 30% of DHA was incorporated directly into rafts without changing the distribution of cholesterol between rafts and nonrafts. Quantification of fluorescence colocalization images showed that DHA selectively altered MHC class I lateral organization by increasing the fraction of the nonraft protein into rafts compared with BSA. Both DHA and EPA treatments increased antibody binding to MHC class I compared with BSA. Antibody titration showed that DHA and EPA did not change MHC I conformation but increased total surface levels relative to BSA. Taken together, our findings are not in agreement with the biophysical model. Therefore, we propose a model that reconciles contradictory viewpoints from biophysical and cellular studies to explain how DHA modifies lipid rafts on several length scales. Our study supports the notion that rafts are an important target of DHA's mode of action.

The raft foundation reinforcement construction technology of Hongyun Building B tower

Science.gov (United States)

Liu, Yu; Yin, Suhua; Wu, Yanli; Zhao, Ying

2017-08-01

The foundation of Hongyun building B tower is made of raft board foundation which is 3300mm in the thickness include four kinds of reinforcement Φ32, Φ28, Φ12 and 12 steel grade two, in respective. It is researched that the raft foundation mass concrete construction technology is expatiated from temperature and cracks of the raft foundation and the temperature control and monitoring of the concrete base slab construction and concrete curing. According to the characteristics with large volume and thickness of the engineering of raft foundation, the construction of the reinforced force was calculated and the quality control measures were used to the reinforcement binding and connection, so it is success that Hongyun Building B tower raft foundation reinforced construction.

Large-Ensemble modeling of past and future variations of the Antarctic Ice Sheet with a coupled ice-Earth-sea level model

Science.gov (United States)

Pollard, David; DeConto, Robert; Gomez, Natalya

2016-04-01

To date, most modeling of the Antarctic Ice Sheet's response to future warming has been calibrated using recent and modern observations. As an alternate approach, we apply a hybrid 3-D ice sheet-shelf model to the last deglacial retreat of Antarctica, making use of geologic data of the last ~20,000 years to test the model against the large-scale variations during this period. The ice model is coupled to a global Earth-sea level model to improve modeling of the bedrock response and to capture ocean-ice gravitational interactions. Following several recent ice-sheet studies, we use Large Ensemble (LE) statistical methods, performing sets of 625 runs from 30,000 years to present with systematically varying model parameters. Objective scores for each run are calculated using modern data and past reconstructed grounding lines, relative sea level records, cosmogenic elevation-age data and uplift rates. The LE results are analyzed to calibrate 4 particularly uncertain model parameters that concern marginal ice processes and interaction with the ocean. LE's are extended into the future with climates following RCP scenarios. An additional scoring criterion tests the model's ability to reproduce estimated sea-level high stands in the warm mid-Pliocene, for which drastic retreat mechanisms of hydrofracturing and ice-cliff failure are needed in the model. The LE analysis provides future sea-level-rise envelopes with well-defined parametric uncertainty bounds. Sensitivities of future LE results to Pliocene sea-level estimates, coupling to the Earth-sea level model, and vertical profiles of Earth properties, will be presented.

FE-simulation of the initial stages of rafting in nickel-base superalloys

International Nuclear Information System (INIS)

Bioermann, H.; Feng Hua; Mughrabi, H.

2000-01-01

In the present work, the model of Socrate and Parks which takes into account the plastic deformation and which applies the method of finite elements (FE) using an energy-perturbation approach will be extended by the introduction of a further contribution to the driving force for rafting, cf. This additional driving force is based on the local variation of the hydrostatic stresses arising from the anisotropic distribution of dislocations after deformation, in combination with the different lattice parameters of the two phases γ and γ'. It is an alternative formulation of the driving force introduced recently. With the present model, the initial stages of rafting and the build-up of internal stresses and strains are determined. (orig.)

The Potsdam Parallel Ice Sheet Model (PISM-PIK – Part 1: Model description

Directory of Open Access Journals (Sweden)

R. Winkelmann

2011-09-01

Full Text Available We present the Potsdam Parallel Ice Sheet Model (PISM-PIK, developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009. Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011 and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP. A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011.

Processes driving sea ice variability in the Bering Sea in an eddying ocean/sea ice model: Mean seasonal cycle

Science.gov (United States)

Li, Linghan; McClean, Julie L.; Miller, Arthur J.; Eisenman, Ian; Hendershott, Myrl C.; Papadopoulos, Caroline A.

2014-12-01

The seasonal cycle of sea ice variability in the Bering Sea, together with the thermodynamic and dynamic processes that control it, are examined in a fine resolution (1/10°) global coupled ocean/sea-ice model configured in the Community Earth System Model (CESM) framework. The ocean/sea-ice model consists of the Los Alamos National Laboratory Parallel Ocean Program (POP) and the Los Alamos Sea Ice Model (CICE). The model was forced with time-varying reanalysis atmospheric forcing for the time period 1970-1989. This study focuses on the time period 1980-1989. The simulated seasonal-mean fields of sea ice concentration strongly resemble satellite-derived observations, as quantified by root-mean-square errors and pattern correlation coefficients. The sea ice energy budget reveals that the seasonal thermodynamic ice volume changes are dominated by the surface energy flux between the atmosphere and the ice in the northern region and by heat flux from the ocean to the ice along the southern ice edge, especially on the western side. The sea ice force balance analysis shows that sea ice motion is largely associated with wind stress. The force due to divergence of the internal ice stress tensor is large near the land boundaries in the north, and it is small in the central and southern ice-covered region. During winter, which dominates the annual mean, it is found that the simulated sea ice was mainly formed in the northern Bering Sea, with the maximum ice growth rate occurring along the coast due to cold air from northerly winds and ice motion away from the coast. South of St Lawrence Island, winds drive the model sea ice southwestward from the north to the southwestern part of the ice-covered region. Along the ice edge in the western Bering Sea, model sea ice is melted by warm ocean water, which is carried by the simulated Bering Slope Current flowing to the northwest, resulting in the S-shaped asymmetric ice edge. In spring and fall, similar thermodynamic and dynamic

Grounding line transient response in marine ice sheet models

Directory of Open Access Journals (Sweden)

A. S. Drouet

2013-03-01

Full Text Available Marine ice-sheet stability is mostly controlled by the dynamics of the grounding line, i.e. the junction between the grounded ice sheet and the floating ice shelf. Grounding line migration has been investigated within the framework of MISMIP (Marine Ice Sheet Model Intercomparison Project, which mainly aimed at investigating steady state solutions. Here we focus on transient behaviour, executing short-term simulations (200 yr of a steady ice sheet perturbed by the release of the buttressing restraint exerted by the ice shelf on the grounded ice upstream. The transient grounding line behaviour of four different flowline ice-sheet models has been compared. The models differ in the physics implemented (full Stokes and shallow shelf approximation, the numerical approach, as well as the grounding line treatment. Their overall response to the loss of buttressing is found to be broadly consistent in terms of grounding line position, rate of surface elevation change and surface velocity. However, still small differences appear for these latter variables, and they can lead to large discrepancies (> 100% observed in terms of ice sheet contribution to sea level when cumulated over time. Despite the recent important improvements of marine ice-sheet models in their ability to compute steady state configurations, our results question the capacity of these models to compute short-term reliable sea-level rise projections.

Proteomic Analysis of Lipid Raft-Like Detergent-Resistant Membranes of Lens Fiber Cells.

Science.gov (United States)

Wang, Zhen; Schey, Kevin L

2015-12-01

Plasma membranes of lens fiber cells have high levels of long-chain saturated fatty acids, cholesterol, and sphingolipids-key components of lipid rafts. Thus, lipid rafts are expected to constitute a significant portion of fiber cell membranes and play important roles in lens biology. The purpose of this study was to characterize the lens lipid raft proteome. Quantitative proteomics, both label-free and iTRAQ methods, were used to characterize lens fiber cell lipid raft proteins. Detergent-resistant, lipid raft membrane (DRM) fractions were isolated by sucrose gradient centrifugation. To confirm protein localization to lipid rafts, protein sensitivity to cholesterol removal by methyl-β-cyclodextrin was quantified by iTRAQ analysis. A total of 506 proteins were identified in raft-like detergent-resistant membranes. Proteins identified support important functions of raft domains in fiber cells, including trafficking, signal transduction, and cytoskeletal organization. In cholesterol-sensitivity studies, 200 proteins were quantified and 71 proteins were strongly affected by cholesterol removal. Lipid raft markers flotillin-1 and flotillin-2 and a significant fraction of AQP0, MP20, and AQP5 were found in the DRM fraction and were highly sensitive to cholesterol removal. Connexins 46 and 50 were more abundant in nonraft fractions, but a small fraction of each was found in the DRM fraction and was strongly affected by cholesterol removal. Quantification of modified AQP0 confirmed that fatty acylation targeted this protein to membrane raft domains. These data represent the first comprehensive profile of the lipid raft proteome of lens fiber cells and provide information on membrane protein organization in these cells.

Tunable, Quantitative Fenton-RAFT Polymerization via Metered Reagent Addition.

Science.gov (United States)

Nothling, Mitchell D; McKenzie, Thomas G; Reyhani, Amin; Qiao, Greg G

2018-05-10

A continuous supply of radical species is a key requirement for activating chain growth and accessing quantitative monomer conversions in reversible addition-fragmentation chain transfer (RAFT) polymerization. In Fenton-RAFT, activation is provided by hydroxyl radicals, whose indiscriminate reactivity and short-lived nature poses a challenge to accessing extended polymerization times and quantitative monomer conversions. Here, an alternative Fenton-RAFT procedure is presented, whereby radical generation can be finely controlled via metered dosing of a component of the Fenton redox reaction (H 2 O 2 ) using an external pumping system. By limiting the instantaneous flux of radicals and ensuring sustained radical generation over tunable time periods, metered reagent addition reduces unwanted radical "wasting" reactions and provides access to consistent quantitative monomer conversions with high chain-end fidelity. Fine tuning of radical concentration during polymerization is achieved simply via adjustment of reagent dose rate, offering significant potential for automation. This modular strategy holds promise for extending traditional RAFT initiation toward more tightly regulated radical concentration profiles and affords excellent prospects for the automation of Fenton-RAFT polymerization. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Aminopeptidase N/CD13 is associated with raft membrane microdomains in monocytes

DEFF Research Database (Denmark)

Navarrete Santos, A; Roentsch, J; Danielsen, E M

2000-01-01

as in adhesion and cell-cell interactions. Here, we report for the first time that aminopeptidase N/CD13 in monocytes is partially localized in detergent-insoluble membrane microdomains enriched in cholesterol, glycolipids, and glycosylphosphoinositol-anchored proteins, referred to as "rafts." Raft fractions...... of monocytes were characterized by the presence of GM1 ganglioside as raft marker molecule and by the high level of tyrosine-phosphorylated proteins. Furthermore, similar to polarized cells, rafts in monocytic cells lack Na(+), K(+)-ATPase. Cholesterol depletion of monocytes by methyl-beta-cyclodextrin greatly...... reduces raft localization of aminopeptidase N/CD13 without affecting ala-p-nitroanilide cleaving activity of cells....

Heinrich event 1: an example of dynamical ice-sheet reaction to oceanic changes

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J. Álvarez-Solas

2011-11-01

Full Text Available Heinrich events, identified as enhanced ice-rafted detritus (IRD in North Atlantic deep sea sediments (Heinrich, 1988; Hemming, 2004 have classically been attributed to Laurentide ice-sheet (LIS instabilities (MacAyeal, 1993; Calov et al., 2002; Hulbe et al., 2004 and assumed to lead to important disruptions of the Atlantic meridional overturning circulation (AMOC and North Atlantic deep water (NADW formation. However, recent paleoclimate data have revealed that most of these events probably occurred after the AMOC had already slowed down or/and NADW largely collapsed, within about a thousand years (Hall et al., 2006; Hemming, 2004; Jonkers et al., 2010; Roche et al., 2004, implying that the initial AMOC reduction could not have been caused by the Heinrich events themselves.

Here we propose an alternative driving mechanism, specifically for Heinrich event 1 (H1; 18 to 15 ka BP, by which North Atlantic ocean circulation changes are found to have strong impacts on LIS dynamics. By combining simulations with a coupled climate model and a three-dimensional ice sheet model, our study illustrates how reduced NADW and AMOC weakening lead to a subsurface warming in the Nordic and Labrador Seas resulting in rapid melting of the Hudson Strait and Labrador ice shelves. Lack of buttressing by the ice shelves implies a substantial ice-stream acceleration, enhanced ice-discharge and sea level rise, with peak values 500–1500 yr after the initial AMOC reduction. Our scenario modifies the previous paradigm of H1 by solving the paradox of its occurrence during a cold surface period, and highlights the importance of taking into account the effects of oceanic circulation on ice-sheets dynamics in order to elucidate the triggering mechanism of Heinrich events.

Extensive sphingolipid depletion does not affect lipid raft integrity or lipid raft localization and efflux function of the ABC transporter MRP1

NARCIS (Netherlands)

Klappe, Karin; Dijkhuis, Anne-Jan; Hummel, Ina; van Dam, Annie; Ivanova, Pavlina T.; Milne, Stephen B.; Myers, David S.; Brown, H. Alex; Permentier, Hjalmar; Kok, Jan W.

2010-01-01

We show that highly efficient depletion of sphingolipids in two different cell lines does not abrogate the ability to isolate Lubrol-based DRMs (detergent-resistant membranes) or detergent-free lipid rafts from these cells. Compared with control, DRM/detergent-free lipid raft fractions contain equal

The shedding activity of ADAM17 is sequestered in lipid rafts

International Nuclear Information System (INIS)

Tellier, Edwige; Canault, Matthias; Rebsomen, Laure; Bonardo, Bernadette; Juhan-Vague, Irene; Nalbone, Gilles; Peiretti, Franck

2006-01-01

The tumor necrosis factor-alpha (TNF) converting enzyme (ADAM17) is a metalloprotease-disintegrin responsible for the cleavage of several biologically active transmembrane proteins. However, the substrate specificity of ADAM17 and the regulation of its shedding activity are still poorly understood. Here, we report that during its transport through the Golgi apparatus, ADAM17 is included in cholesterol-rich membrane microdomains (lipid rafts) where its prodomain is cleaved by furin. Consequently, ADAM17 shedding activity is sequestered in lipid rafts, which is confirmed by the fact that metalloproteinase inhibition increases the proportion of ADAM17 substrates (TNF and its receptors TNFR1 and TNFR2) in lipid rafts. Membrane cholesterol depletion increases the ADAM17-dependent shedding of these substrates demonstrating the importance of lipid rafts in the control of this process. Furthermore, ADAM17 substrates are present in different proportions in lipid rafts, suggesting that the entry of each of these substrates in these particular membrane microdomains is specifically regulated. Our data support the idea that one of the mechanisms regulating ADAM17 substrate cleavage involves protein partitioning in lipid rafts

Toward a Value for Guided Rafting on Southern Rivers

Science.gov (United States)

J. Michael Bowker; Donald B.K. English; Jason A. Donovan

1996-01-01

This study examines per trip consumer surplus associated with guided whitewater rafting on two southern rivers. First, household recreation demand functions are estimated based on the individual travel cost model using truncated count data regression methods and alternative price specifications. Findings show mean per trip consumer surplus point estimates between $89...

Synthesis and characterization of telechelic polymethacrylates via RAFT polymerization

NARCIS (Netherlands)

Lima, V.G.R.; Jiang, X.; Brokken-Zijp, J.C.M.; Schoenmakers, P.J.; Klumperman, B.; Linde, van der R.

2005-01-01

The reversible addn.-fragmentation chain transfer (RAFT) polymn. technique has been employed to synthesize linear a,w -telechelic polymers with either hydroxyl or carboxyl end groups. Me methacrylate, Bu methacrylate, and Bu acrylate were polymd. with RAFT polymn. The polymns. exhibited the usual

Synthesis and characterization of telechelic polymers prepared by RAFT

NARCIS (Netherlands)

Lima, V.G.R.; Brokken-Zijp, J.C.M.; Klumperman, B.; Benthem - van Duuren, van A.M.G.; Linde, van der R.

2003-01-01

The reversible addn.-fragmentation chain transfer (RAFT) polymn. technique was employed to synthesize telechelic polymers. Me methacrylate, Bu methacrylate were polymd. using RAFT polymn. The polymns. exhibit the usual characteristics of living processes, and were followed by a two-step chain-end

A modified discrete element model for sea ice dynamics

Institute of Scientific and Technical Information of China (English)

LI Baohui; LI Hai; LIU Yu; WANG Anliang; JI Shunying

2014-01-01

Considering the discontinuous characteristics of sea ice on various scales, a modified discrete element mod-el (DEM) for sea ice dynamics is developed based on the granular material rheology. In this modified DEM, a soft sea ice particle element is introduced as a self-adjustive particle size function. Each ice particle can be treated as an assembly of ice floes, with its concentration and thickness changing to variable sizes un-der the conservation of mass. In this model, the contact forces among ice particles are calculated using a viscous-elastic-plastic model, while the maximum shear forces are described with the Mohr-Coulomb fric-tion law. With this modified DEM, the ice flow dynamics is simulated under the drags of wind and current in a channel of various widths. The thicknesses, concentrations and velocities of ice particles are obtained, and then reasonable dynamic process is analyzed. The sea ice dynamic process is also simulated in a vortex wind field. Taking the influence of thermodynamics into account, this modified DEM will be improved in the future work.

Global ice volume variations through the last glacial cycle simulated by a 3-D ice-dynamical model

NARCIS (Netherlands)

Bintanja, R.; Wal, R.S.W. van de; Oerlemans, J.

2002-01-01

A coupled ice sheet—ice shelf—bedrock model was run at 20km resolution to simulate the evolution of global ice cover during the last glacial cycle. The mass balance model uses monthly mean temperature and precipitation as input and incorporates the albedo—mass balance feedback. The model is forced

Climate Modeling: Ocean Cavities below Ice Shelves

Energy Technology Data Exchange (ETDEWEB)

Petersen, Mark Roger [Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Computer, Computational, and Statistical Sciences Division

2016-09-12

The Accelerated Climate Model for Energy (ACME), a new initiative by the U.S. Department of Energy, includes unstructured-mesh ocean, land-ice, and sea-ice components using the Model for Prediction Across Scales (MPAS) framework. The ability to run coupled high-resolution global simulations efficiently on large, high-performance computers is a priority for ACME. Sub-ice shelf ocean cavities are a significant new capability in ACME, and will be used to better understand how changing ocean temperature and currents influence glacial melting and retreat. These simulations take advantage of the horizontal variable-resolution mesh and adaptive vertical coordinate in MPAS-Ocean, in order to place high resolution below ice shelves and near grounding lines.

Probabilistic Modeling and Risk Assessment of Cable Icing

DEFF Research Database (Denmark)

Roldsgaard, Joan Hee

This dissertation addresses the issues related to icing of structures with special emphasis on bridge cables. Cable supported bridges in cold climate suffers for ice accreting on the cables, this poses three different undesirable situations. Firstly the changed shape of the cable due to ice...... preliminary framework is modified for assessing the probability of occurrence of in-cloud and precipitation icing and its duration. Different probabilistic models are utilized for the representation of the meteorological variables and their appropriateness is evaluated both through goodness-of-fit tests...... are influencing the two icing mechanisms and their duration. The model is found to be more sensitive to changes in the discretization levels of the input variables. Thirdly the developed operational probabilistic framework for the assessment of the expected number of occurrences of ice/snow accretion on bridge...

Involvement of glycosphingolipid-enriched lipid rafts in inflammatory responses.

Science.gov (United States)

Iwabuchi, Kazuhisa

2015-01-01

Glycosphingolipids (GSLs) are membrane components consisting of hydrophobic ceramide and hydrophilic sugar moieties. GSLs cluster with cholesterol in cell membranes to form GSL-enriched lipid rafts. Biochemical analyses have demonstrated that GSL-enriched lipid rafts contain several kinds of transducer molecules, including Src family kinases. Among the GSLs, lactosylceramide (LacCer, CDw17) can bind to various microorganisms, is highly expressed on the plasma membranes of human phagocytes, and forms lipid rafts containing the Src family tyrosine kinase Lyn. LacCer-enriched lipid rafts mediate immunological and inflammatory reactions, including superoxide generation, chemotaxis, and non-opsonic phagocytosis. Therefore, LacCer-enriched membrane microdomains are thought to function as pattern recognition receptors (PRRs), which recognize pathogen-associated molecular patterns (PAMPs) expressed on microorganisms. LacCer also serves as a signal transduction molecule for functions mediated by CD11b/CD18-integrin (αM/β2-integrin, CR3, Mac-1), as well as being associated with several key cellular processes. LacCer recruits PCKα/ε and phospholipase A2 to stimulate PECAM-1 expression in human monocytes and their adhesion to endothelial cells, as well as regulating β1-integrin clustering and endocytosis on cell surfaces. This review describes the organizational and inflammation-related functions of LacCer-enriched lipid rafts.

An ice crystal model for jupiter's moon Europa

DEFF Research Database (Denmark)

Dahl-Jensen, Dorthe; schmidt, Karen Guldbae

2003-01-01

A simple model for crystal growth in the ice shell of Europa has been made in order to estimate the size of ice crystals at Europa's surface. If mass is lost from the surface of Europa due to sputtering processes, and the ice thickness is constant in time, ice crystals will be transported upwards...

Separation of actin-dependent and actin-independent lipid rafts

NARCIS (Netherlands)

Klappe, Karin; Hummel, Ina; Kok, Jan Willem

2013-01-01

Lipid rafts have been isolated on the basis of their resistance to various detergents and more recently by using detergent-free procedures. The actin cytoskeleton is now recognized as a dynamic regulator of lipid raft stability. We carefully analyzed the effects of the cortical actin-disrupting

Rapid, long-distance dispersal by pumice rafting.

Directory of Open Access Journals (Sweden)

Scott E Bryan

Full Text Available Pumice is an extremely effective rafting agent that can dramatically increase the dispersal range of a variety of marine organisms and connect isolated shallow marine and coastal ecosystems. Here we report on a significant recent pumice rafting and long-distance dispersal event that occurred across the southwest Pacific following the 2006 explosive eruption of Home Reef Volcano in Tonga. We have constrained the trajectory, and rate, biomass and biodiversity of transfer, discovering more than 80 species and a substantial biomass underwent a >5000 km journey in 7-8 months. Differing microenvironmental conditions on the pumice, caused by relative stability of clasts at the sea surface, promoted diversity in biotic recruitment. Our findings emphasise pumice rafting as an important process facilitating the distribution of marine life, which have implications for colonisation processes and success, the management of sensitive marine environments, and invasive pest species.

Ice Sheet Model Intercomparison Project (ISMIP6) Contribution to CMIP6

Science.gov (United States)

Nowicki, Sophie M. J.; Payne, Tony; Larour, Eric; Seroussi, Helene; Goelzer, Heiko; Lipscomb, William; Gregory, Jonathan; Abe-Ouchi, Ayako; Shepherd, Andrew

2016-01-01

Reducing the uncertainty in the past, present, and future contribution of ice sheets to sea-level change requires a coordinated effort between the climate and glaciology communities. The Ice Sheet Model Intercomparison Project for CMIP6 (ISMIP6) is the primary activity within the Coupled Model Intercomparison Project phase 6 (CMIP6) focusing on the Greenland and Antarctic ice sheets. In this paper, we describe the framework for ISMIP6 and its relationship with other activities within CMIP6. The ISMIP6 experimental design relies on CMIP6 climate models and includes, for the first time within CMIP, coupled ice-sheetclimate models as well as standalone ice-sheet models. To facilitate analysis of the multi-model ensemble and to generate a set of standard climate inputs for standalone ice-sheet models, ISMIP6 defines a protocol for all variables related to ice sheets. ISMIP6 will provide a basis for investigating the feedbacks, impacts, and sea-level changes associated with dynamic ice sheets and for quantifying the uncertainty in ice-sheet-sourced global sea-level change.

Ice Sheet Model Intercomparison Project (ISMIP6) contribution to CMIP6

Science.gov (United States)

Nowicki, Sophie M.J.; Payne, Tony; Larour, Eric; Seroussi, Helene; Goelzer, Heiko; Lipscomb, William; Gregory, Jonathan; Abe-Ouchi, Ayako; Shepherd, Andrew

2018-01-01

Reducing the uncertainty in the past, present and future contribution of ice sheets to sea-level change requires a coordinated effort between the climate and glaciology communities. The Ice Sheet Model Intercomparison Project for CMIP6 (ISMIP6) is the primary activity within the Coupled Model Intercomparison Project – phase 6 (CMIP6) focusing on the Greenland and Antarctic Ice Sheets. In this paper, we describe the framework for ISMIP6 and its relationship to other activities within CMIP6. The ISMIP6 experimental design relies on CMIP6 climate models and includes, for the first time within CMIP, coupled ice sheet – climate models as well as standalone ice sheet models. To facilitate analysis of the multi-model ensemble and to generate a set of standard climate inputs for standalone ice sheet models, ISMIP6 defines a protocol for all variables related to ice sheets. ISMIP6 will provide a basis for investigating the feedbacks, impacts, and sea-level changes associated with dynamic ice sheets and for quantifying the uncertainty in ice-sheet-sourced global sea-level change. PMID:29697697

RAFT technology for the production of advanced photoresist polymers

Science.gov (United States)

Sheehan, Michael T.; Farnham, William B.; Okazaki, Hiroshi; Sounik, James R.; Clark, George

2008-03-01

Reversible Addition Fragmentation Chain Transfer (RAFT) technology has been developed for use in producing high yield low polydispersity (PD) polymers for many applications. RAFT technology is being used to produce low PD polymers and to allow control of the polymer architecture. A variety of polymers are being synthesized for use in advanced photoresists using this technique. By varying the RAFT reagent used we can modulate the system reactivity of the RAFT reagent and optimize it for use in acrylate or methacrylate monomer systems (193 and 193i photoresist polymers) or for use in styrenic monomer systems (248 nm photoresist polymers) to achieve PD as low as 1.05. RAFT polymerization technology also allows us to produce block copolymers using a wide variety of monomers. These block copolymers have been shown to be useful in self assembly polymer applications to produce unique and very small feature sizes. The mutual compatibilities of all the components within a single layer 193 photoresist are very important in order to achieve low LWR and low defect count. The advent of immersion imaging demands an additional element of protection at the solid/liquid interface. We have used RAFT technology to produce block copolymers comprising a random "resist" block with composition and size based on conventional dry photoresist materials, and a "low surface energy" block for use in 193i lithography. The relative block lengths and compositions may be varied to tune solution behavior, surface energy, contact angles, and solubility in developer. The use of this technique will be explored to produce polymers used in hydrophobic single layer resists as well as additives compatible with the main photoresist polymer.

An investigation of the astronomical theory of the ice ages using a simple climate-ice sheet model

Science.gov (United States)

Pollard, D.

1978-01-01

The astronomical theory of the Quaternary ice ages is incorporated into a simple climate model for global weather; important features of the model include the albedo feedback, topography and dynamics of the ice sheets. For various parameterizations of the orbital elements, the model yields realistic assessments of the northern ice sheet. Lack of a land-sea heat capacity contrast represents one of the chief difficulties of the model.

Surfactant-Free RAFT Emulsion Polymerization of Styrene Using Thermoresponsive macroRAFT Agents: Towards Smart Well-Defined Block Copolymers with High Molecular Weights

Directory of Open Access Journals (Sweden)

Steffen Eggers

2017-12-01

Full Text Available The combination of reversible addition–fragmentation chain transfer (RAFT and emulsion polymerization has recently attracted much attention as a synthetic tool for high-molecular-weight block copolymers and their micellar nano-objects. Up to recently, though, the use of thermoresponsive polymers as both macroRAFT agents and latex stabilizers was impossible in aqueous media due to their hydrophobicity at the usually high polymerization temperatures. In this work, we present a straightforward surfactant-free RAFT emulsion polymerization to obtain thermoresponsive styrenic block copolymers with molecular weights of around 100 kDa and their well-defined latexes. The stability of the aqueous latexes is achieved by adding 20 vol % of the cosolvent 1,4-dioxane (DOX, increasing the phase transition temperature (PTT of the used thermoresponsive poly(N-acryloylpyrrolidine (PAPy macroRAFT agents above the polymerization temperature. Furthermore, this cosolvent approach is combined with the use of poly(N,N-dimethylacrylamide-block-poly(N-acryloylpiperidine-co-N-acryloylpyrrolidine (PDMA-b-P(APi-co-APy as the macroRAFT agent owning a short stabilizing PDMA end block and a widely adjustable PTT of the P(APi-co-APy block in between 4 and 47 °C. The temperature-induced collapse of the latter under emulsion polymerization conditions leads to the formation of RAFT nanoreactors, which allows for a very fast chain growth of the polystyrene (PS block. In dynamic light scattering (DLS, as well as cryo-transmission electron microscopy (cryoTEM, moreover, all created latexes indeed reveal a high (temperature stability and a reversible collapse of the thermoresponsive coronal block upon heating. Hence, this paper pioneers a versatile way towards amphiphilic thermoresponsive high-molecular-weight block copolymers and their nano-objects with tailored corona switchability.

Bottom Fixed Platform Dynamics Models Assessing Surface Ice Interactions for Transitional Depth Structures in the Great Lakes: FAST8 – IceDyn

Energy Technology Data Exchange (ETDEWEB)

Karr, Dale G. [Univ. of Michigan, Ann Arbor, MI (United States); Yu, Bingbin [Principle Power, Inc., Emeryville, CA (United States); Sirnivas, Senu [National Renewable Energy Lab. (NREL), Golden, CO (United States)

2015-04-01

To create long-term solutions for offshore wind turbines in a variety of environmental conditions, CAE tools are needed to model the design-driving loads that interact with an offshore wind turbine system during operation. This report describes our efforts in augmenting existing CAE tools used for offshore wind turbine analysis with a new module that can provide simulation capabilities for ice loading on the system. This augmentation was accomplished by creating an ice-loading module coupled to FAST8, the CAE tool maintained by the NREL for simulating land-based and offshore wind turbine dynamics. The new module includes both static and dynamic ice loading that can be applied during a dynamic simulation of the response of an offshore wind turbine. The ice forces can be prescribed, or influenced by the structure’s compliant response, or by the dynamics of both the structure and the ice floe. The new module covers ice failure modes of spalling, buckling, crushing, splitting, and bending. The supporting structure of wind turbines can be modeled as a vertical or sloping form at the waterline. The Inward Battered Guide Structure (IBGS) foundation designed by Keystone Engineering for the Great Lakes was used to study the ice models coupled to FAST8. The IBGS foundation ice loading simulations in FAST8 were compared to the baseline simulation case without ice loading. The ice conditions reflecting those from Lake Huron at Port Huron and Lake Michigan at North Manitou were studied under near rated wind speed of 12 m/s for the NREL 5-MW reference turbine. Simulations were performed on ice loading models 1 through 4 and ice model 6 with their respective sub-models. The purpose of ice model 5 is to investigate ice loading on sloping structures such as ice-cones on a monopile and is not suitable for multi-membered jacketed structures like the IBGS foundation. The key response parameters from the simulations, shear forces and moments from the tower base and IBGS foundation

Uncertainty Quantification for Large-Scale Ice Sheet Modeling

Energy Technology Data Exchange (ETDEWEB)

Ghattas, Omar [Univ. of Texas, Austin, TX (United States)

2016-02-05

This report summarizes our work to develop advanced forward and inverse solvers and uncertainty quantification capabilities for a nonlinear 3D full Stokes continental-scale ice sheet flow model. The components include: (1) forward solver: a new state-of-the-art parallel adaptive scalable high-order-accurate mass-conservative Newton-based 3D nonlinear full Stokes ice sheet flow simulator; (2) inverse solver: a new adjoint-based inexact Newton method for solution of deterministic inverse problems governed by the above 3D nonlinear full Stokes ice flow model; and (3) uncertainty quantification: a novel Hessian-based Bayesian method for quantifying uncertainties in the inverse ice sheet flow solution and propagating them forward into predictions of quantities of interest such as ice mass flux to the ocean.

Analysis of Sea Ice Cover Sensitivity in Global Climate Model

Directory of Open Access Journals (Sweden)

V. P. Parhomenko

2014-01-01

Full Text Available The paper presents joint calculations using a 3D atmospheric general circulation model, an ocean model, and a sea ice evolution model. The purpose of the work is to analyze a seasonal and annual evolution of sea ice, long-term variability of a model ice cover, and its sensitivity to some parameters of model as well to define atmosphere-ice-ocean interaction.Results of 100 years simulations of Arctic basin sea ice evolution are analyzed. There are significant (about 0.5 m inter-annual fluctuations of an ice cover.The ice - atmosphere sensible heat flux reduced by 10% leads to the growth of average sea ice thickness within the limits of 0.05 m – 0.1 m. However in separate spatial points the thickness decreases up to 0.5 m. An analysis of the seasonably changing average ice thickness with decreasing, as compared to the basic variant by 0.05 of clear sea ice albedo and that of snow shows the ice thickness reduction in a range from 0.2 m up to 0.6 m, and the change maximum falls for the summer season of intensive melting. The spatial distribution of ice thickness changes shows, that on the large part of the Arctic Ocean there was a reduction of ice thickness down to 1 m. However, there is also an area of some increase of the ice layer basically in a range up to 0.2 m (Beaufort Sea. The 0.05 decrease of sea ice snow albedo leads to reduction of average ice thickness approximately by 0.2 m, and this value slightly depends on a season. In the following experiment the ocean – ice thermal interaction influence on the ice cover is estimated. It is carried out by increase of a heat flux from ocean to the bottom surface of sea ice by 2 W/sq. m in comparison with base variant. The analysis demonstrates, that the average ice thickness reduces in a range from 0.2 m to 0.35 m. There are small seasonal changes of this value.The numerical experiments results have shown, that an ice cover and its seasonal evolution rather strongly depend on varied parameters

Icing modelling in NSMB with chimera overset grids

Energy Technology Data Exchange (ETDEWEB)

Pena, D. [Ècole Polytechnique de Montréal (Canada); ICUBE, Strasbourg University (France); Deloze, T.; Laurendeau, E. [Ècole Polytechnique de Montréal (Canada); Hoarau, Y. [ICUBE, Strasbourg University (France)

2015-03-10

In aerospace Engineering, the accurate simulation of ice accretion is a key element to increase flight safety and avoid accidents related to icing effects. The icing code developed in the NSMB solver is based on an Eulerian formulation for droplets tracking, an iterative Messinger model using a modified water runback scheme for ice thickness calculation and mesh deformation to track the ice/air interface through time. The whole process is parallelized with MPI and applied with chimera grids.

Multiblock copolymers synthesized in aqueous dispersions using multifunctional RAFT agents

NARCIS (Netherlands)

Bussels, R.; Bergman-Göttgens, C.M.; Meuldijk, J.; Koning, C.E.

2005-01-01

Triblock copolymers were synthesized in aqueous dispersions in two polymerization steps using a low molar mass difunctional dithiocarbamate-based RAFT agent, and in merely one polymerization step using a macromolecular difunctional dithiocarbamate-based RAFT agent. Segmented block copolymers

Numerical and physical modelling of oil spreading in broken ice

International Nuclear Information System (INIS)

Gjoesteen, Janne K. Oekland

2002-01-01

The present work focuses on oil spreading in broken ice and the content of this thesis falls into three categories: 1) The physical and numerical modelling of oil spreading in ice. 2) Ice models and parameters describing the ice cover. 3) Experiments on oil spreading in broken ice. A background study was carried out to investigate existing models for simulating oil in broken ice. Most of them describe motion of oil simply as a function of the ice motion and do not take advantage of the possibilities that recent ice models provide. We decided to choose another direction, starting from scratch with equations describing the flow of oil on top of a water surface. The equations were implemented numerically, including proper boundary conditions to account for the presence of physical restrictions in the form of ice floes in the simulation area. The implementation was designed to be able to apply data on ice motion calculated by an existing dynamic ice model. A first validation of the model was carried out using existing experimental data. As those data were obtained in a different setting, the recorded parameters and set-up of the experiment were not ideal for our purpose. However, we were able to conclude that our model behaviour was reasonable. We have carried out statistical analysis on meteorological data of wind speeds, temperatures, flow sizes and ice thickness to obtain probability distributions describing the parameters. Those data has been collected in the Pechora Sea. Wind and temperature had been recorded for a period of 30-40 years. For this region we also had available Argos satellite data from four buoys drifting in the ice in April-June 1998. The Argos data were carefully analysed to suggest probability distributions and return periods for certain speeds. (Indoor basin tests were carried out to obtain data on spreading of oil in broken ice. A set of 20 tests was conducted, each with different type of oil, ice concentration, slush concentration or ice

Numerical and physical modelling of oil spreading in broken ice

Energy Technology Data Exchange (ETDEWEB)

Gjoesteen, Janne K. Oekland

2002-07-01

The present work focuses on oil spreading in broken ice and the content of this thesis falls into three categories: 1) The physical and numerical modelling of oil spreading in ice. 2) Ice models and parameters describing the ice cover. 3) Experiments on oil spreading in broken ice. A background study was carried out to investigate existing models for simulating oil in broken ice. Most of them describe motion of oil simply as a function of the ice motion and do not take advantage of the possibilities that recent ice models provide. We decided to choose another direction, starting from scratch with equations describing the flow of oil on top of a water surface. The equations were implemented numerically, including proper boundary conditions to account for the presence of physical restrictions in the form of ice floes in the simulation area. The implementation was designed to be able to apply data on ice motion calculated by an existing dynamic ice model. A first validation of the model was carried out using existing experimental data. As those data were obtained in a different setting, the recorded parameters and set-up of the experiment were not ideal for our purpose. However, we were able to conclude that our model behaviour was reasonable. We have carried out statistical analysis on meteorological data of wind speeds, temperatures, flow sizes and ice thickness to obtain probability distributions describing the parameters. Those data has been collected in the Pechora Sea. Wind and temperature had been recorded for a period of 30-40 years. For this region we also had available Argos satellite data from four buoys drifting in the ice in April-June 1998. The Argos data were carefully analysed to suggest probability distributions and return periods for certain speeds. (Indoor basin tests were carried out to obtain data on spreading of oil in broken ice. A set of 20 tests was conducted, each with different type of oil, ice concentration, slush concentration or ice

Molecularly Imprinted Polymer Synthesis Using RAFT Polymerisation

International Nuclear Information System (INIS)

Cormack, P.A.G.; Faizatul Shimal Mehamod; Faizatul Shimal Mehamod

2013-01-01

In this paper, the synthesis and characterisation of caffeine-imprinted polymers are described. The polymers were prepared in monolithic form via both reversible addition-fragmentation chain-transfer (RAFT) polymerisation and conventional free radical polymerisation, using methacrylic acid and ethylene glycol dimethacrylate as the functional monomer and crosslinking agent, respectively. The potential benefits in applying RAFT polymerisation techniques towards the synthesis of molecularly imprinted polymers (MIPs) are explored and elucidated. The pore structures of the polymers produced were characterised by nitrogen sorption porosimetry and the molecular recognition properties of representative products were evaluated in high-performance liquid chromatography (HPLC) mode. Molecular imprinting effects were confirmed by analysing the relative retentions of analytes on imprinted and non-imprinted HPLC stationary phases. It was found that a caffeine-imprinted polymer synthesised by RAFT polymerisation was superior to a polymer prepared using a conventional synthetic approach; the imprinting factor and column efficiency were found to be higher for the former material. (author)

Raft-like membrane domains in pathogenic microorganisms.

Science.gov (United States)

Farnoud, Amir M; Toledo, Alvaro M; Konopka, James B; Del Poeta, Maurizio; London, Erwin

2015-01-01

The lipid bilayer of the plasma membrane is thought to be compartmentalized by the presence of lipid-protein microdomains. In eukaryotic cells, microdomains composed of sterols and sphingolipids, commonly known as lipid rafts, are believed to exist, and reports on the presence of sterol- or protein-mediated microdomains in bacterial cell membranes are also appearing. Despite increasing attention, little is known about microdomains in the plasma membrane of pathogenic microorganisms. This review attempts to provide an overview of the current state of knowledge of lipid rafts in pathogenic fungi and bacteria. The current literature on characterization of microdomains in pathogens is reviewed, and their potential role in growth, pathogenesis, and drug resistance is discussed. Better insight into the structure and function of membrane microdomains in pathogenic microorganisms might lead to a better understanding of their pathogenesis and development of raft-mediated approaches for therapy. Copyright © 2015 Elsevier Inc. All rights reserved.

Raft river geoscience case study, volume 1

Science.gov (United States)

Dolenc, M. R.; Hull, L. C.; Mizell, S. A.; Russell, B. F.; Skiba, P. A.; Strawn, J. A.; Tullis, J. A.; Garber, R.

1981-11-01

The Raft River Geothermal Site has been evaluated over the past eight years by the United States Geological Survey and the Idaho National Engineering Laboratory as a moderate-temperature geothermal resource. The geoscience data gathered in the drilling and testing of seven geothermal wells suggest that the Raft River thermal reservoir is: (1) produced from fractures found at the contact metamorphic zone apparently the base of detached normal faulting from the Bridge and Horse Well Fault zones of the Jim Sage Mountains; (2) anisotropic, with the major axis of hydraulic conductivity coincident to the Bridge Fault Zone; (3) hydraulically connected to the shallow thermal fluid of the Crook and BLM wells based upon both geochemistry and pressure response; (4) controlled by a mixture of diluted meteoric water recharging from the northwest and a saline sodium chloride water entering from the southwest. Although the hydrogeologic environment of the Raft River geothermal area is very complex and unique, it is typical of many Basin and Range systems.

Modelling the future of the arctic sea ice cover

OpenAIRE

Myklebust, Erik Bryhn

2017-01-01

Record lows in sea ice cover have recently sparked new interest in the small ice cap instability. The change in albedo when sea ice becomes open water introduces a nonlinearity called the ice-albedo feedback. Forcing a joint energy- balance and sea ice model can lead to unstable ice caps in certain parameter regimes. When the ice caps are unstable, a small perturbation will initiate a tipping point in the sea ice cover. For tipping points in general, a number of studies have pointed out that ...

Three-dimensional analysis for piled raft machine foundation embedded in sand

Directory of Open Access Journals (Sweden)

Mahmood Mahmood

2018-01-01

Full Text Available Three-dimensional analysis for the dynamic response of a piled raft foundation subjected to vertical vibration is presented in this study. The analysis considers several factors affecting the amplitude of displacement for deep foundation such as pile cap embedment, pile cap thickness, relative density of the sand and the boundary effect. A validation for an experimental piled raft model depending on a scale factor of (20 using at (Plaxis 3D computer program was performed. The sand is simulated using Mohr-Coloumb model while the concrete is simulated as linear elastic material. It has been found that embedding the pile cap in the soil and increasing its thickness lead to decrease the maximum amplitude of displacement. Furthermore, the predictions showed that increasing the distance between the foundation and the boundaries and increasing the relative density of the sand can significantly minimize the dynamic response of the foundation.

In search of laterally heterogeneous viscosity models of Glacial Isostatic Adjustment with the ICE-6G_C global ice history model

Science.gov (United States)

Li, Tanghua; Wu, Patrick; Steffen, Holger; Wang, Hansheng

2018-05-01

Most models of Glacial Isostatic Adjustment (GIA) assume that the Earth is laterally homogeneous. However, seismic and geological observations clearly show that the Earth's mantle is laterally heterogeneous. Previous studies of GIA with lateral heterogeneity mostly focused on its effect or sensitivity on GIA predictions, and it is not clear to what extent can lateral heterogeneity solve the misfits between GIA predictions and observations. Our aim is to search for the best 3D viscosity models that can simultaneously fit the global relative sea-level (RSL) data, the peak uplift rates (u-dot from GNSS) and peak gravity-rate-of-change (g-dot from the GRACE satellite mission) in Laurentia and Fennoscandia. However, the search is dependent on the ice and viscosity model inputs - the latter depends on the background viscosity and the seismic tomography models used. In this paper, the ICE-6G_C ice model, with Bunge & Grand's seismic tomography model and background viscosity models close to VM5 will be assumed. A Coupled Laplace-Finite Element Method is used to compute gravitationally self-consistent sea level change with time dependent coastlines and rotational feedback in addition to changes in deformation, gravity and the state of stress. Several laterally heterogeneous models are found to fit the global sea level data better than laterally homogeneous models. Two of these laterally heterogeneous models also fit the ICE-6G_C peak g-dot and u-dot rates observed in Laurentia simultaneously. However, even with the introduction of lateral heterogeneity, no model that is able to fit the present-day g-dot and uplift rate data in Fennoscandia has been found. Therefore, either the ice history of ICE-6G_C in Fennoscandia and Barent Sea needs some modifications, or the sub-lithospheric property/non-thermal effect underneath northern Europe must be different from that underneath Laurentia.

Lipid raft integrity affects GABAA receptor, but not NMDA receptor modulation by psychopharmacological compounds.

Science.gov (United States)

Nothdurfter, Caroline; Tanasic, Sascha; Di Benedetto, Barbara; Uhr, Manfred; Wagner, Eva-Maria; Gilling, Kate E; Parsons, Chris G; Rein, Theo; Holsboer, Florian; Rupprecht, Rainer; Rammes, Gerhard

2013-07-01

Lipid rafts have been shown to play an important role for G-protein mediated signal transduction and the function of ligand-gated ion channels including their modulation by psychopharmacological compounds. In this study, we investigated the functional significance of the membrane distribution of NMDA and GABAA receptor subunits in relation to the accumulation of the tricyclic antidepressant desipramine (DMI) and the benzodiazepine diazepam (Diaz). In the presence of Triton X-100, which allowed proper separation of the lipid raft marker proteins caveolin-1 and flotillin-1 from the transferrin receptor, all receptor subunits were shifted to the non-raft fractions. In contrast, under detergent-free conditions, NMDA and GABAA receptor subunits were detected both in raft and non-raft fractions. Diaz was enriched in non-raft fractions without Triton X-100 in contrast to DMI, which preferentially accumulated in lipid rafts. Impairment of lipid raft integrity by methyl-β-cyclodextrine (MβCD)-induced cholesterol depletion did not change the inhibitory effect of DMI at the NMDA receptor, whereas it enhanced the potentiating effect of Diaz at the GABAA receptor at non-saturating concentrations of GABA. These results support the hypothesis that the interaction of benzodiazepines with the GABAA receptor likely occurs outside of lipid rafts while the antidepressant DMI acts on ionotropic receptors both within and outside these membrane microdomains.

Sensitivity of whitewater rafting consumers surplus to pecuniary travel cost specifications

Science.gov (United States)

Donald B.K. English; J. Michael Bowker

1996-01-01

Considerable research has examined how different ways of accounting for onsite and travel time affect surplus estimates from travel cost models. However, little has been done regarding different definitions of out-of-pocket costs. Estimates of per trip consumer surplus are developed for a zonal travel cost model for outfitted rafting on the Chattooga River. Nine price...

Summer Arctic sea ice albedo in CMIP5 models

OpenAIRE

Koenigk, T.; Devasthale, A.; Karlsson, K.-G.

2014-01-01

Spatial and temporal variations of summer sea ice albedo over the Arctic are analyzed using an ensemble of historical CMIP5 model simulations. The results are compared to the CLARA-SAL product that is based on long-term satellite observations. The summer sea ice albedo varies substantially among CMIP5 models, and many models show large biases compared to the CLARA-SAL product. Single summer months show an extreme spread of ice albedo among models; July values vary between 0....

αVβ3 Integrin-Targeted Radionuclide Therapy with 64Cu-cyclam-RAFT-c(-RGDfK-)4.

Science.gov (United States)

Jin, Zhao-Hui; Furukawa, Takako; Degardin, Mélissa; Sugyo, Aya; Tsuji, Atsushi B; Yamasaki, Tomoteru; Kawamura, Kazunori; Fujibayashi, Yasuhisa; Zhang, Ming-Rong; Boturyn, Didier; Dumy, Pascal; Saga, Tsuneo

2016-09-01

The transmembrane cell adhesion receptor αVβ3 integrin (αVβ3) has been identified as an important molecular target for cancer imaging and therapy. We have developed a tetrameric cyclic RGD (Arg-Gly-Asp) peptide-based radiotracer (64)Cu-cyclam-RAFT-c(-RGDfK-)4, which successfully captured αVβ3-positive tumors and angiogenesis by PET. Here, we subsequently evaluated its therapeutic potential and side effects using an established αVβ3-positive tumor mouse model. Mice with subcutaneous U87MG glioblastoma xenografts received single administrations of 37 and 74 MBq of (64)Cu-cyclam-RAFT-c(-RGDfK-)4 (37 MBq/nmol), peptide control, or vehicle solution and underwent tumor growth evaluation. Side effects were assessed in tumor-bearing and tumor-free mice in terms of body weight, routine hematology, and hepatorenal functions. Biodistribution of (64)Cu-cyclam-RAFT-c(-RGDfK-)4 with ascending peptide doses (0.25-10 nmol) and with the therapeutic dose of 2 nmol were determined at 3 hours and at various time points (2 minutes-24 hours) postinjection, respectively, based on which radiation-absorbed doses were estimated. The results revealed that (64)Cu-cyclam-RAFT-c(-RGDfK-)4 dose dependently slowed down the tumor growth. The mean tumor doses were 1.28 and 1.81 Gy from 37 and 74 MBq of (64)Cu-cyclam-RAFT-c(-RGDfK-)4, respectively. Peptide dose study showed that the tumor uptake of (64)Cu-cyclam-RAFT-c(-RGDfK-)4 dose dependently decreased at doses ≥1 nmol, indicating a saturation of αVβ3 with the administered therapeutic doses (1 and 2 nmol). Combined analysis of the data from tumor-bearing and tumor-free mice revealed no significant toxicity caused by 37-74 MBq of (64)Cu-cyclam-RAFT-c(-RGDfK-)4 Our study demonstrates the therapeutic efficacy and safety of (64)Cu-cyclam-RAFT-c(-RGDfK-)4 for αVβ3-targeted radionuclide therapy. (64)Cu-cyclam-RAFT-c(-RGDfK-)4 would be a promising theranostic drug for cancer imaging and therapy. Mol Cancer Ther; 15(9); 2076-85. ©2016 AACR

Towards a Universal Calving Law: Modeling Ice Shelves Using Damage Mechanics

Science.gov (United States)

Whitcomb, M.; Bassis, J. N.; Price, S. F.; Lipscomb, W. H.

2017-12-01

Modeling iceberg calving from ice shelves and ice tongues is a particularly difficult problem in glaciology because of the wide range of observed calving rates. Ice shelves naturally calve large tabular icebergs at infrequent intervals, but may instead calve smaller bergs regularly or disintegrate due to hydrofracturing in warmer conditions. Any complete theory of iceberg calving in ice shelves must be able to generate realistic calving rate values depending on the magnitudes of the external forcings. Here we show that a simple damage evolution law, which represents crevasse distributions as a continuum field, produces reasonable estimates of ice shelf calving rates when added to the Community Ice Sheet Model (CISM). Our damage formulation is based on a linear stability analysis and depends upon the bulk stress and strain rate in the ice shelf, as well as the surface and basal melt rates. The basal melt parameter in our model enhances crevasse growth near the ice shelf terminus, leading to an increased iceberg production rate. This implies that increasing ocean temperatures underneath ice shelves will drive ice shelf retreat, as has been observed in the Amundsen and Bellingshausen Seas. We show that our model predicts broadly correct calving rates for ice tongues ranging in length from 10 km (Erebus) to over 100 km (Drygalski), by matching the computed steady state lengths to observations. In addition, we apply the model to idealized Antarctic ice shelves and show that we can also predict realistic ice shelf extents. Our damage mechanics model provides a promising, computationally efficient way to compute calving fluxes and links ice shelf stability to climate forcing.

Direct surface PEGylation of nanodiamond via RAFT polymerization

International Nuclear Information System (INIS)

Shi, Yingge; Liu, Meiying; Wang, Ke; Huang, Hongye; Wan, Qing; Tao, Lei; Fu, Lihua; Zhang, Xiaoyong; Wei, Yen

2015-01-01

Graphical abstract: In this paper, we describe an efficient, practical and novel method to modify ND via direct immobilization of chain transfer agent for RAFT polymerization. - Highlights: • Surface PEGylation of ND via RAFT polymerization. • ND with high water dispersibility and excellent biocompatibility. • Controlled living polymerization. - Abstract: Nanodiamond (ND) is a novel class of carbon nanomaterials, which has been extensively investigated for biomedical applications because of its small size, high surface area and excellent biocompatibility. However, the biomedical applications of unmodified ND are still largely restricted because of their poor dispersibility in both aqueous and organic medium. In this work, we reported a novel strategy for the surface modification of ND via reversible addition fragmentation chain transfer (RAFT) polymerization. For preparation of the PEGylated ND (pPEGMA-ND), chain transfer agent (CTA) was immobilized onto ND through reaction between the hydroxyl group of ND and the carboxyl group of CTA, which was used as the initiator for surface-initiated RAFT polymerization. The successful preparation of pPEGMA-ND was characterized by nuclear magnetic resonance spectroscopy, Fourier transform infrared spectroscopy, X-ray photoelectron spectra and thermal gravimetric analysis in detail. Results demonstrated that pPEGMA-ND exhibited enhanced water dispersibility and desirable biocompatibility, making it promising for biomedical applications.

Direct surface PEGylation of nanodiamond via RAFT polymerization

Energy Technology Data Exchange (ETDEWEB)

Shi, Yingge [Department of Chemistry and Jiangxi Provincial Key Laboratory of New Energy Chemistry, Nanchang University, 999 Xuefu Avenue, Nanchang 330031 (China); School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004 (China); Liu, Meiying [Department of Chemistry and Jiangxi Provincial Key Laboratory of New Energy Chemistry, Nanchang University, 999 Xuefu Avenue, Nanchang 330031 (China); Wang, Ke [Department of Chemistry and the Tsinghua Center for Frontier Polymer Research, Tsinghua University, Beijing 100084 (China); Huang, Hongye; Wan, Qing [Department of Chemistry and Jiangxi Provincial Key Laboratory of New Energy Chemistry, Nanchang University, 999 Xuefu Avenue, Nanchang 330031 (China); Tao, Lei [Department of Chemistry and the Tsinghua Center for Frontier Polymer Research, Tsinghua University, Beijing 100084 (China); Fu, Lihua [School of Chemistry and Chemical Engineering, Guangxi University, Nanning 530004 (China); Zhang, Xiaoyong, E-mail: xiaoyongzhang1980@gmail.com [Department of Chemistry and Jiangxi Provincial Key Laboratory of New Energy Chemistry, Nanchang University, 999 Xuefu Avenue, Nanchang 330031 (China); Wei, Yen, E-mail: weiyen@tsinghua.edu.cn [Department of Chemistry and the Tsinghua Center for Frontier Polymer Research, Tsinghua University, Beijing 100084 (China)

2015-12-01

Graphical abstract: In this paper, we describe an efficient, practical and novel method to modify ND via direct immobilization of chain transfer agent for RAFT polymerization. - Highlights: • Surface PEGylation of ND via RAFT polymerization. • ND with high water dispersibility and excellent biocompatibility. • Controlled living polymerization. - Abstract: Nanodiamond (ND) is a novel class of carbon nanomaterials, which has been extensively investigated for biomedical applications because of its small size, high surface area and excellent biocompatibility. However, the biomedical applications of unmodified ND are still largely restricted because of their poor dispersibility in both aqueous and organic medium. In this work, we reported a novel strategy for the surface modification of ND via reversible addition fragmentation chain transfer (RAFT) polymerization. For preparation of the PEGylated ND (pPEGMA-ND), chain transfer agent (CTA) was immobilized onto ND through reaction between the hydroxyl group of ND and the carboxyl group of CTA, which was used as the initiator for surface-initiated RAFT polymerization. The successful preparation of pPEGMA-ND was characterized by nuclear magnetic resonance spectroscopy, Fourier transform infrared spectroscopy, X-ray photoelectron spectra and thermal gravimetric analysis in detail. Results demonstrated that pPEGMA-ND exhibited enhanced water dispersibility and desirable biocompatibility, making it promising for biomedical applications.

Geochemical and sedimentological properties of Heinrich layers H2 and H1 off the Hudson Strait ice-surging source areas: ice-rafting vs water-laid down depositional mechanisms

Science.gov (United States)

Nuttin, L.; Hillaire-Marcel, C.

2012-12-01

The ~9 m-long core HU08-029-004PC was raised from the lower Labrador Sea slope (2674 m water-depth), approximately 180 km off Hudson Strait shelf edge. It yielded a high resolution record spanning the last 35 ka. The sequence includes layers with abundant detrital carbonates produced by glacial erosion of Paleozoic rocks and released into the Labrador Sea through ice streaming processes in Hudson Strait and Ungava Bay. These layers are assigned to 'Heinrich events' 3 (at core bottom), 2 and 1. Sedimentological properties and U and Th isotope measurements are used to document depositional mechanisms and durations of these layers. Data suggest: i) intense ice-rafting deposition (IRD) due to iceberg calving at the ice-stream edge, as illustrated by the coarse fraction content of the layers, and ii) sub-glacial meltwater flushing over the Hudson Strait sill, carrying fine silt-size, carbonate-rich glacial flour to the shelf-edge. Such suspended sediment pulses led to the spreading of turbidites mostly into the deep Labrador Sea, through the NAMOC system. Others late-glacial events, such as the ~ 8.2 ka final drainage of Lake Agassiz, are also recorded in the study core, whereas the H0 layer, exclusively observed in the western Labrador Sea is missing. CAT-scan images, mineralogical data, carbonate abundance, %>106 μm fraction (mostly IRD here), U-Th isotope data and 14C ages of planktic foraminifera assemblages (Neogloboquadrina pachyderma, l.) are used to further document H2 (760 to 700 cm) and H1 (588 to 488 cm). The H-layers contain up to 60% of fine detrital carbonates (about 2/3 calcite, 1/3 dolomite). Whereas the fine calcitic material points to sediment sources (basal till/water-laid glacial sediments) in the Hudson Strait and Ungava Bay, i.e., originating from the glacial erosion of Paleozoic carbonates from the area, the dolomitic component might have several origins (from Proterozoic and Paleozoic limestones in the Hudson Bay and Strait, to northwestern

Sea-ice deformation in a coupled ocean–sea-ice model and in satellite remote sensing data

Directory of Open Access Journals (Sweden)

G. Spreen

2017-07-01

Full Text Available A realistic representation of sea-ice deformation in models is important for accurate simulation of the sea-ice mass balance. Simulated sea-ice deformation from numerical simulations with 4.5, 9, and 18 km horizontal grid spacing and a viscous–plastic (VP sea-ice rheology are compared with synthetic aperture radar (SAR satellite observations (RGPS, RADARSAT Geophysical Processor System for the time period 1996–2008. All three simulations can reproduce the large-scale ice deformation patterns, but small-scale sea-ice deformations and linear kinematic features (LKFs are not adequately reproduced. The mean sea-ice total deformation rate is about 40 % lower in all model solutions than in the satellite observations, especially in the seasonal sea-ice zone. A decrease in model grid spacing, however, produces a higher density and more localized ice deformation features. The 4.5 km simulation produces some linear kinematic features, but not with the right frequency. The dependence on length scale and probability density functions (PDFs of absolute divergence and shear for all three model solutions show a power-law scaling behavior similar to RGPS observations, contrary to what was found in some previous studies. Overall, the 4.5 km simulation produces the most realistic divergence, vorticity, and shear when compared with RGPS data. This study provides an evaluation of high and coarse-resolution viscous–plastic sea-ice simulations based on spatial distribution, time series, and power-law scaling metrics.

Glypican-1 mediates both prion protein lipid raft association and disease isoform formation.

Directory of Open Access Journals (Sweden)

David R Taylor

2009-11-01

Full Text Available In prion diseases, the cellular form of the prion protein, PrP(C, undergoes a conformational conversion to the infectious isoform, PrP(Sc. PrP(C associates with lipid rafts through its glycosyl-phosphatidylinositol (GPI anchor and a region in its N-terminal domain which also binds to heparan sulfate proteoglycans (HSPGs. We show that heparin displaces PrP(C from rafts and promotes its endocytosis, suggesting that heparin competes with an endogenous raft-resident HSPG for binding to PrP(C. We then utilised a transmembrane-anchored form of PrP (PrP-TM, which is targeted to rafts solely by its N-terminal domain, to show that both heparin and phosphatidylinositol-specific phospholipase C can inhibit its association with detergent-resistant rafts, implying that a GPI-anchored HSPG targets PrP(C to rafts. Depletion of the major neuronal GPI-anchored HSPG, glypican-1, significantly reduced the raft association of PrP-TM and displaced PrP(C from rafts, promoting its endocytosis. Glypican-1 and PrP(C colocalised on the cell surface and both PrP(C and PrP(Sc co-immunoprecipitated with glypican-1. Critically, treatment of scrapie-infected N2a cells with glypican-1 siRNA significantly reduced PrP(Sc formation. In contrast, depletion of glypican-1 did not alter the inhibitory effect of PrP(C on the beta-secretase cleavage of the Alzheimer's amyloid precursor protein. These data indicate that glypican-1 is a novel cellular cofactor for prion conversion and we propose that it acts as a scaffold facilitating the interaction of PrP(C and PrP(Sc in lipid rafts.

Phase diagrams of lipid mixtures relevant to the study of membrane rafts

DEFF Research Database (Denmark)

Goni, Felix; Alonso, Alicia; Bagatolli, Luis

2008-01-01

The present paper reviews the phase properties of phosphatidylcholine-sphingomyelin-cholesterol mixtures, that are often used as models for membrane "raft" microdomains. The available data based on X-ray, microscopic and spectroscopic observations, surface pressure and calorimetric measurements, ...

On The Importance of Connecting Laboratory Measurements of Ice Crystal Growth with Model Parameterizations: Predicting Ice Particle Properties

Science.gov (United States)

Harrington, J. Y.

2017-12-01

Parameterizing the growth of ice particles in numerical models is at an interesting cross-roads. Most parameterizations developed in the past, including some that I have developed, parse model ice into numerous categories based primarily on the growth mode of the particle. Models routinely possess smaller ice, snow crystals, aggregates, graupel, and hail. The snow and ice categories in some models are further split into subcategories to account for the various shapes of ice. There has been a relatively recent shift towards a new class of microphysical models that predict the properties of ice particles instead of using multiple categories and subcategories. Particle property models predict the physical characteristics of ice, such as aspect ratio, maximum dimension, effective density, rime density, effective area, and so forth. These models are attractive in the sense that particle characteristics evolve naturally in time and space without the need for numerous (and somewhat artificial) transitions among pre-defined classes. However, particle property models often require fundamental parameters that are typically derived from laboratory measurements. For instance, the evolution of particle shape during vapor depositional growth requires knowledge of the growth efficiencies for the various axis of the crystals, which in turn depends on surface parameters that can only be determined in the laboratory. The evolution of particle shapes and density during riming, aggregation, and melting require data on the redistribution of mass across a crystals axis as that crystal collects water drops, ice crystals, or melts. Predicting the evolution of particle properties based on laboratory-determined parameters has a substantial influence on the evolution of some cloud systems. Radiatively-driven cirrus clouds show a broader range of competition between heterogeneous nucleation and homogeneous freezing when ice crystal properties are predicted. Even strongly convective squall

Neuroglobin overexpression plays a pivotal role in neuroprotection through mitochondrial raft-like microdomains in neuroblastoma SK-N-BE2 cells.

Science.gov (United States)

Garofalo, Tina; Ferri, Alberto; Sorice, Maurizio; Azmoon, Pardis; Grasso, Maria; Mattei, Vincenzo; Capozzi, Antonella; Manganelli, Valeria; Misasi, Roberta

2018-04-01

Since stressing conditions induce a relocalization of endogenous human neuroglobin (NGB) to mitochondria, this research is aimed to evaluate the protective role of NGB overexpression against neurotoxic stimuli, through mitochondrial lipid raft-associated complexes. To this purpose, we built a neuronal model of oxidative stress by the use of human dopaminergic neuroblastoma cells, SK-N-BE2, stably overexpressing NGB by transfection and treated with 1-methyl-4-phenylpyridinium ion (MPP+). We preliminary observed the redistribution of NGB to mitochondria following MPP+ treatment. The analysis of mitochondrial raft-like microdomains revealed that, following MPP+ treatment, NGB translocated to raft fractions (Triton X-100-insoluble), where it interacts with ganglioside GD3. Interestingly, the administration of agents capable of perturbating microdomain before MPP+ treatment, significantly affected viability in SK-N-BE2-NGB cells. The overexpression of NGB was able to abrogate the mitochondrial injuries on complex IV activity or mitochondrial morphology induced by MPP+ administration. The protective action of NGB on mitochondria only takes place if the mitochondrial lipid(s) rafts-like microdomains are intact, indeed NGB fails to protect complex IV activity when purified mitochondria were treated with the lipid rafts disruptor methyl-β-cyclodextrin. Thus, our unique in vitro model of stably transfected cells overexpressing endogenous NGB allowed us to suggest that the role in neuroprotection played by NGB is reliable only through interaction with mitochondrial lipid raft-associated complexes. Copyright © 2018 Elsevier Inc. All rights reserved.

An Imminent Revolution in Modeling Interactions of Ice Sheets With Climate

Science.gov (United States)

Hughes, T.

2008-12-01

Modeling continental ice sheets was inaugurated by meteorologists William Budd and Uwe Radok, with mathematician Richard Jenssen, in 1971. Their model calculated the thermal and mechanical regime using measured surface accumulation rates, temperatures, and elevations, and bed topography. This top-down approach delivered a basal thermal regime of temperatures or melting rates for an assumed basal geothermal heat flux. When Philippe Huybrechts and others incorporated time, largely unknownpast surface conditions had a major effect on present basal thermal conditions. This approach produced ice-sheet models with only a slow response to external forcing, whereas the glacial geological record and climate records from ice and ocean cores show that ice sheets can have rapid changes in size and shape independent of external forcing. These top-down models were wholly inadequate for reconstructing former ice sheets at the LGM for CLIMAP in 1981. Ice-sheet areas,elevations, and volumes provided the albedo, surface topography, and sea-surface area as input to climate models. A bottom-up model based on dated glacial geology was developed to provide the areal extent and basal thermal regime of ice sheets at the LGM. Basal thermal conditions determined ice-bed coupling and therefore the elevation of ice sheets. High convex ice surfaces for slow sheet flow lower about 20 percent when a frozen bed becomes thawed. As further basal melting drowns bedrock bumps that "pin" basal ice, the ice surface becomes concave in fast stream flow that ends as low floating ice shelves at marine ice margins. A revolution in modeling interactions between glaciation, climate, and sea level is driven by new Greenland and Antarctic data from Earth-orbiting satellites, airborne and surface traverses, and deep drilling. We anticipate continuous data acquisition of surface albedo, accumulation/ablation rates, elevations, velocities, and temperatures over a whole ice sheet, mapping basal thermal conditions

The foundation mass concrete construction technology of Hongyun Building B tower raft

Science.gov (United States)

Liu, Yu; Yin, Suhua; Wu, Yanli; Zhao, Ying

2017-08-01

The foundation of Hongyun building B tower is made of raft board foundation which is 3300mm in the thickness and 2800mm beside side of the core tube. It is researched that the raft foundation mass concrete construction technology is expatiated from temperature and cracks of the raft foundation and the temperature control and monitoring of the concrete base slab construction and concrete curing.

Dynamic clustering and dispersion of lipid rafts contribute to fusion competence of myogenic cells

Energy Technology Data Exchange (ETDEWEB)

Mukai, Atsushi [Department of Regenerative Medicine, National Institute for Longevity Sciences, National Center for Geriatrics and Gerontology, 36-3 Gengo, Morioka, Oobu, Aichi 474-8522 (Japan); Kurisaki, Tomohiro [Department of Growth Regulation, Institute for Frontier Medical Sciences, Kyoto University, 53 Shogoin-Kawahara-cho, Sakyo-ku, Kyoto 606-8507 (Japan); Sato, Satoshi B. [Research Center for Low Temperature and Material Sciences, Kyoto University, Yoshida-honmachi, Kyoto 606-8501 (Japan); Kobayashi, Toshihide [Lipid Biology Laboratory, Discovery Research Institute, RIKEN, Wako, Saitama 351-0198 (Japan); Kondoh, Gen [Laboratory of Animal Experiments for Regeneration, Institute for Frontier Medical Sciences, Kyoto University, 53 Shogoin-Kawahara-cho, Sakyo-ku, Kyoto 606-8507 (Japan); Hashimoto, Naohiro, E-mail: nao@nils.go.jp [Department of Regenerative Medicine, National Institute for Longevity Sciences, National Center for Geriatrics and Gerontology, 36-3 Gengo, Morioka, Oobu, Aichi 474-8522 (Japan)

2009-10-15

Recent research indicates that the leading edge of lamellipodia of myogenic cells (myoblasts and myotubes) contains presumptive fusion sites, yet the mechanisms that render the plasma membrane fusion-competent remain largely unknown. Here we show that dynamic clustering and dispersion of lipid rafts contribute to both cell adhesion and plasma membrane union during myogenic cell fusion. Adhesion-complex proteins including M-cadherin, {beta}-catenin, and p120-catenin accumulated at the leading edge of lamellipodia, which contains the presumptive fusion sites of the plasma membrane, in a lipid raft-dependent fashion prior to cell contact. In addition, disruption of lipid rafts by cholesterol depletion directly prevented the membrane union of myogenic cell fusion. Time-lapse recording showed that lipid rafts were laterally dispersed from the center of the lamellipodia prior to membrane fusion. Adhesion proteins that had accumulated at lipid rafts were also removed from the presumptive fusion sites when lipid rafts were laterally dispersed. The resultant lipid raft- and adhesion complex-free area at the leading edge fused with the opposing plasma membrane. These results demonstrate a key role for dynamic clustering/dispersion of lipid rafts in establishing fusion-competent sites of the myogenic cell membrane, providing a novel mechanistic insight into the regulation of myogenic cell fusion.

Dynamic clustering and dispersion of lipid rafts contribute to fusion competence of myogenic cells

International Nuclear Information System (INIS)

Mukai, Atsushi; Kurisaki, Tomohiro; Sato, Satoshi B.; Kobayashi, Toshihide; Kondoh, Gen; Hashimoto, Naohiro

2009-01-01

Recent research indicates that the leading edge of lamellipodia of myogenic cells (myoblasts and myotubes) contains presumptive fusion sites, yet the mechanisms that render the plasma membrane fusion-competent remain largely unknown. Here we show that dynamic clustering and dispersion of lipid rafts contribute to both cell adhesion and plasma membrane union during myogenic cell fusion. Adhesion-complex proteins including M-cadherin, β-catenin, and p120-catenin accumulated at the leading edge of lamellipodia, which contains the presumptive fusion sites of the plasma membrane, in a lipid raft-dependent fashion prior to cell contact. In addition, disruption of lipid rafts by cholesterol depletion directly prevented the membrane union of myogenic cell fusion. Time-lapse recording showed that lipid rafts were laterally dispersed from the center of the lamellipodia prior to membrane fusion. Adhesion proteins that had accumulated at lipid rafts were also removed from the presumptive fusion sites when lipid rafts were laterally dispersed. The resultant lipid raft- and adhesion complex-free area at the leading edge fused with the opposing plasma membrane. These results demonstrate a key role for dynamic clustering/dispersion of lipid rafts in establishing fusion-competent sites of the myogenic cell membrane, providing a novel mechanistic insight into the regulation of myogenic cell fusion.

A network model for characterizing brine channels in sea ice

Science.gov (United States)

Lieblappen, Ross M.; Kumar, Deip D.; Pauls, Scott D.; Obbard, Rachel W.

2018-03-01

The brine pore space in sea ice can form complex connected structures whose geometry is critical in the governance of important physical transport processes between the ocean, sea ice, and surface. Recent advances in three-dimensional imaging using X-ray micro-computed tomography have enabled the visualization and quantification of the brine network morphology and variability. Using imaging of first-year sea ice samples at in situ temperatures, we create a new mathematical network model to characterize the topology and connectivity of the brine channels. This model provides a statistical framework where we can characterize the pore networks via two parameters, depth and temperature, for use in dynamical sea ice models. Our approach advances the quantification of brine connectivity in sea ice, which can help investigations of bulk physical properties, such as fluid permeability, that are key in both global and regional sea ice models.

Reconstructing the post-LGM decay of the Eurasian Ice Sheets with Ice Sheet Models; data-model comparison and focus on the Storfjorden (Svalbard) ice stream dynamics history

Science.gov (United States)

Petrini, Michele; Kirchner, Nina; Colleoni, Florence; Camerlenghi, Angelo; Rebesco, Michele; Lucchi, Renata G.; Forte, Emanuele; Colucci, Renato R.

2017-04-01

The challenge of reconstructing palaeo-ice sheets past growth and decay represent a critical task to better understand mechanisms of present and future global climate change. Last Glacial Maximum (LGM), and the subsequent deglaciation until Pre-Industrial time (PI) represent an excellent testing ground for numerical Ice Sheet Models (ISMs), due to the abundant data available that can be used in an ISM as boundary conditions, forcings or constraints to test the ISMs results. In our study, we simulate with ISMs the post-LGM decay of the Eurasian Ice Sheets, with a focus on the marine-based Svalbard-Barents Sea-Kara Sea Ice Sheet. In particular, we aim to reconstruct the Storfjorden ice stream dynamics history by comparing the model results with the marine geological data (MSGLs, GZWs, sediment cores analysis) available from the area, e.g., Pedrosa et al. 2011, Rebesco et al. 2011, 2013, Lucchi et al. 2013. Two hybrid SIA/SSA ISMs are employed, GRISLI, Ritz et al. 2001, and PSU, Pollard&DeConto 2012. These models differ mainly in the complexity with which grounding line migration is treated. Climate forcing is interpolated by means of climate indexes between LGM and PI climate. Regional climate indexes are constructed based on the non-accelerated deglaciation transient experiment carried out with CCSM3, Liu et al. 2009. Indexes representative of the climate evolution over Siberia, Svalbard and Scandinavia are employed. The impact of such refined representation as opposed to the common use of the NGRIP δ18O index for transient experiments is analysed. In this study, the ice-ocean interaction is crucial to reconstruct the Storfjorden ice stream dynamics history. To investigate the sensitivity of the ice shelf/stream retreat to ocean temperature, we allow for a space-time variation of basal melting under the ice shelves by testing two-equations implementations based on Martin et al. 2011 forced with simulated ocean temperature and salinity from the TraCE-21ka coupled

A Model of Icebergs and Sea Ice in a Joint Continuum Framework

Science.gov (United States)

VaÅková, Irena; Holland, David M.

2017-11-01

The ice mélange, a mixture of sea ice and icebergs, often present in front of outlet glaciers in Greenland or ice shelves in Antarctica, can have a profound effect on the dynamics of the ice-ocean system. The current inability to numerically model the ice mélange motivates a new modeling approach proposed here. A continuum sea-ice model is taken as a starting point and icebergs are represented as thick and compact pieces of sea ice held together by large tensile and shear strength, selectively introduced into the sea-ice rheology. In order to modify the rheology correctly, an iceberg tracking procedure is implemented within a semi-Lagrangian time-stepping scheme, designed to exactly preserve iceberg shape through time. With the proposed treatment, sea ice and icebergs are considered a single fluid with spatially varying rheological properties. Mutual interactions are thus automatically included without the need for further parametrization. An important advantage of the presented framework for an ice mélange model is its potential to be easily included within sea-ice components of existing climate models.

The Relationship between fenestrations, sieve plates and rafts in liver sinusoidal endothelial cells.

Directory of Open Access Journals (Sweden)

Dmitri Svistounov

Full Text Available Fenestrations are transcellular pores in endothelial cells that facilitate transfer of substrates between blood and the extravascular compartment. In order to understand the regulation and formation of fenestrations, the relationship between membrane rafts and fenestrations was investigated in liver sinusoidal endothelial cells where fenestrations are grouped into sieve plates. Three dimensional structured illumination microscopy, scanning electron microscopy, internal reflectance fluorescence microscopy and two-photon fluorescence microscopy were used to study liver sinusoidal endothelial cells isolated from mice. There was an inverse distribution between sieve plates and membrane rafts visualized by structured illumination microscopy and the fluorescent raft stain, Bodipy FL C5 ganglioside GM1. 7-ketocholesterol and/or cytochalasin D increased both fenestrations and lipid-disordered membrane, while Triton X-100 decreased both fenestrations and lipid-disordered membrane. The effects of cytochalasin D on fenestrations were abrogated by co-administration of Triton X-100, suggesting that actin disruption increases fenestrations by its effects on membrane rafts. Vascular endothelial growth factor (VEGF depleted lipid-ordered membrane and increased fenestrations. The results are consistent with a sieve-raft interaction, where fenestrations form in non-raft lipid-disordered regions of endothelial cells once the membrane-stabilizing effects of actin cytoskeleton and membrane rafts are diminished.

Carbon Dioxide Transfer Through Sea Ice: Modelling Flux in Brine Channels

Science.gov (United States)

Edwards, L.; Mitchelson-Jacob, G.; Hardman-Mountford, N.

2010-12-01

For many years sea ice was thought to act as a barrier to the flux of CO2 between the ocean and atmosphere. However, laboratory-based and in-situ observations suggest that while sea ice may in some circumstances reduce or prevent transfer (e.g. in regions of thick, superimposed multi-year ice), it may also be highly permeable (e.g. thin, first year ice) with some studies observing significant fluxes of CO2. Sea ice covered regions have been observed to act both as a sink and a source of atmospheric CO2 with the permeability of sea ice and direction of flux related to sea ice temperature and the presence of brine channels in the ice, as well as seasonal processes such as whether the ice is freezing or thawing. Brine channels concentrate dissolved inorganic carbon (DIC) as well as salinity and as these dense waters descend through both the sea ice and the surface ocean waters, they create a sink for CO2. Calcium carbonate (ikaite) precipitation in the sea ice is thought to enhance this process. Micro-organisms present within the sea ice will also contribute to the CO2 flux dynamics. Recent evidence of decreasing sea ice extent and the associated change from a multi-year ice to first-year ice dominated system suggest the potential for increased CO2 flux through regions of thinner, more porous sea ice. A full understanding of the processes and feedbacks controlling the flux in these regions is needed to determine their possible contribution to global CO2 levels in a future warming climate scenario. Despite the significance of these regions, the air-sea CO2 flux in sea ice covered regions is not currently included in global climate models. Incorporating this carbon flux system into Earth System models requires the development of a well-parameterised sea ice-air flux model. In our work we use the Los Alamos sea ice model, CICE, with a modification to incorporate the movement of CO2 through brine channels including the addition of DIC processes and ice algae production to

Improvement of Aconitum napellus micropropagation by liquid culture on floating membrane rafts.

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Watad, A A; Kochba, M; Nissim, A; Gaba, V

1995-03-01

An efficient method was developed using floating membrane rafts (Liferaft(™)) for the micropropagation of Aconitum napellus (Ranunculaceae), a cut flower crop with a low natural propagation rate. This was achieved by introducing shoot tips into culture on Murashige and Skoog's (1962) solid medium, or liquid medium-supported rafts, supplemented by different levels of benzyl adenine (BA). Optimum shoot proliferation on solid medium required 4mg/l BA, whereas for expiants supported on rafts optimal proliferation was achieved at 0.25mg/l BA. Maximum shoot proliferation was found using the floating rafts (propagation ratio of 4.2 per month), 45% higher than the maximum value on solid medium. A similar value could be obtained on solid medium after a period of 2 months. The optimal response to BA was similar for fresh weight gain and shoot length. Growth in a shallow layer of liquid in shake flasks gives a similar shoot multiplication rate to that on floating rafts; however, submerged leaves brown and die.

Modeling and Grid Generation of Iced Airfoils

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Vickerman, Mary B.; Baez, Marivell; Braun, Donald C.; Hackenberg, Anthony W.; Pennline, James A.; Schilling, Herbert W.

2007-01-01

SmaggIce Version 2.0 is a software toolkit for geometric modeling and grid generation for two-dimensional, singleand multi-element, clean and iced airfoils. A previous version of SmaggIce was described in Preparing and Analyzing Iced Airfoils, NASA Tech Briefs, Vol. 28, No. 8 (August 2004), page 32. To recapitulate: Ice shapes make it difficult to generate quality grids around airfoils, yet these grids are essential for predicting ice-induced complex flow. This software efficiently creates high-quality structured grids with tools that are uniquely tailored for various ice shapes. SmaggIce Version 2.0 significantly enhances the previous version primarily by adding the capability to generate grids for multi-element airfoils. This version of the software is an important step in streamlining the aeronautical analysis of ice airfoils using computational fluid dynamics (CFD) tools. The user may prepare the ice shape, define the flow domain, decompose it into blocks, generate grids, modify/divide/merge blocks, and control grid density and smoothness. All these steps may be performed efficiently even for the difficult glaze and rime ice shapes. Providing the means to generate highly controlled grids near rough ice, the software includes the creation of a wrap-around block (called the "viscous sublayer block"), which is a thin, C-type block around the wake line and iced airfoil. For multi-element airfoils, the software makes use of grids that wrap around and fill in the areas between the viscous sub-layer blocks for all elements that make up the airfoil. A scripting feature records the history of interactive steps, which can be edited and replayed later to produce other grids. Using this version of SmaggIce, ice shape handling and grid generation can become a practical engineering process, rather than a laborious research effort.

How accurate are estimates of glacier ice thickness? Results from ITMIX, the Ice Thickness Models Intercomparison eXperiment

DEFF Research Database (Denmark)

Farinotti, Daniel; Brinkerhoff, Douglas J.; Clarke, Garry K. C.

2017-01-01

Knowledge of the ice thickness distribution of glaciers and ice caps is an important prerequisite for many glaciological and hydrological investigations. A wealth of approaches has recently been presented for inferring ice thickness from characteristics of the surface. With the Ice Thickness Models...

Modelling sea ice formation in the Terra Nova Bay polynya

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Sansiviero, M.; Morales Maqueda, M. Á.; Fusco, G.; Aulicino, G.; Flocco, D.; Budillon, G.

2017-02-01

Antarctic sea ice is constantly exported from the shore by strong near surface winds that open leads and large polynyas in the pack ice. The latter, known as wind-driven polynyas, are responsible for significant water mass modification due to the high salt flux into the ocean associated with enhanced ice growth. In this article, we focus on the wind-driven Terra Nova Bay (TNB) polynya, in the western Ross Sea. Brine rejected during sea ice formation processes that occur in the TNB polynya densifies the water column leading to the formation of the most characteristic water mass of the Ross Sea, the High Salinity Shelf Water (HSSW). This water mass, in turn, takes part in the formation of Antarctic Bottom Water (AABW), the densest water mass of the world ocean, which plays a major role in the global meridional overturning circulation, thus affecting the global climate system. A simple coupled sea ice-ocean model has been developed to simulate the seasonal cycle of sea ice formation and export within a polynya. The sea ice model accounts for both thermal and mechanical ice processes. The oceanic circulation is described by a one-and-a-half layer, reduced gravity model. The domain resolution is 1 km × 1 km, which is sufficient to represent the salient features of the coastline geometry, notably the Drygalski Ice Tongue. The model is forced by a combination of Era Interim reanalysis and in-situ data from automatic weather stations, and also by a climatological oceanic dataset developed from in situ hydrographic observations. The sensitivity of the polynya to the atmospheric forcing is well reproduced by the model when atmospheric in situ measurements are combined with reanalysis data. Merging the two datasets allows us to capture in detail the strength and the spatial distribution of the katabatic winds that often drive the opening of the polynya. The model resolves fairly accurately the sea ice drift and sea ice production rates in the TNB polynya, leading to

Quantifying uncertainty and sensitivity in sea ice models

Energy Technology Data Exchange (ETDEWEB)

Urrego Blanco, Jorge Rolando [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Hunke, Elizabeth Clare [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Urban, Nathan Mark [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

2016-07-15

The Los Alamos Sea Ice model has a number of input parameters for which accurate values are not always well established. We conduct a variance-based sensitivity analysis of hemispheric sea ice properties to 39 input parameters. The method accounts for non-linear and non-additive effects in the model.

Lipid raft-associated β-adducin is required for PSGL-1-mediated neutrophil rolling on P-selectin.

Science.gov (United States)

Xu, Tingshuang; Liu, Wenai; Yang, Chen; Ba, Xueqing; Wang, Xiaoguang; Jiang, Yong; Zeng, Xianlu

2015-02-01

Lipid rafts, a liquid-ordered plasma membrane microdomain, are related to cell-surface receptor function. PSGL-1, a major surface receptor protein for leukocyte, also acts as a signaling receptor in leukocyte rolling. To investigate the role of lipid raft in PSGL-1 signaling in human neutrophils, we quantitatively analyzed lipid raft proteome of human promyelocytic leukemia cell line HL-60 cells and identified a lipid raft-associated protein β-adducin. PSGL-1 ligation induced dissociation of the raft-associated protein β-adducin from lipid rafts and actin, as well as phosphorylation of β-adducin, indicating a transient uncoupling of lipid rafts from the actin cytoskeleton. Knockdown of β-adducin greatly attenuated HL-60 cells rolling on P-selectin. We also showed that Src kinase is crucial for PSGL-1 ligation-induced β-adducin phosphorylation and relocation. Taken together, these results show that β-adducin is a pivotal lipid raft-associated protein in PSGL-1-mediated neutrophil rolling on P-selectin. © Society for Leukocyte Biology.

An Ice Model That is Consistent with Composite Rheology in GIA Modelling

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Huang, P.; Patrick, W.

2017-12-01

There are several popular approaches in constructing ice history models. One of them is mainly based on thermo-mechanical ice models with forcing or boundary conditions inferred from paleoclimate data. The second one is mainly based on the observed response of the Earth to glacial loading and unloading, a process called Glacial Isostatic Adjustment or GIA. The third approach is a hybrid version of the first and second approaches. In this presentation, we will follow the second approach which also uses geological data such as ice flow, terminal moraine data and simple ice dynamic for the ice sheet re-construction (Peltier & Andrew 1976). The global ice model ICE-6G (Peltier et al. 2015) and all its predecessors (Tushingham & Peltier 1991, Peltier 1994, 1996, 2004, Lambeck et al. 2014) are constructed this way with the assumption that mantle rheology is linear. However, high temperature creep experiments on mantle rocks show that non-linear creep laws can also operate in the mantle. Since both linear (e.g. diffusion creep) and non-linear (e.g. dislocation) creep laws can operate simultaneously in the mantle, mantle rheology is likely composite, where the total creep is the sum of both linear and onlinear creep. Preliminary GIA studies found that composite rheology can fit regional RSL observations better than that from linear rheology(e.g. van der Wal et al. 2010). The aim of this paper is to construct ice models in Laurentia and Fennoscandia using this second approach, but with composite rheology, so that its predictions can fit GIA observations such as global RSL data, land uplift rate and g-dot simultaneously in addition to geological data and simple ice dynamics. The g-dot or gravity-rate-of-change data is from the GRACE gravity mission but with the effects of hydrology removed. Our GIA model is based on the Coupled Laplace-Finite Element method as described in Wu(2004) and van der Wal et al.(2010). It is found that composite rheology generally supports a thicker

Characterization of the functions and proteomes associated with membrane rafts in chicken sperm.

Directory of Open Access Journals (Sweden)

Ai Ushiyama

Full Text Available Cellular membranes are heterogeneous, and this has a great impact on cellular function. Despite the central role of membrane functions in multiple cellular processes in sperm, their molecular mechanisms are poorly understood. Membrane rafts are specific membrane domains enriched in cholesterol, ganglioside GM1, and functional proteins, and they are involved in the regulation of a variety of cellular functions. Studies of the functional characterization of membrane rafts in mammalian sperm have demonstrated roles in sperm-egg binding and the acrosomal reaction. Recently, our biochemical and cell biological studies showed that membrane rafts are present and might play functional roles in chicken sperm. In this study, we isolated membrane rafts from chicken sperm as a detergent-resistant membranes (DRM floating on a density gradient in the presence of 1% Triton X-100, and characterized the function and proteomes associated with these domains. Biochemical comparison of the DRM between fresh and cryopreserved sperm demonstrated that cryopreservation induces cholesterol loss specifically from membrane rafts, indicating the functional connection with reduced post-thaw fertility in chicken sperm. Furthermore, using an avidin-biotin system, we found that sperm DRM is highly enriched in a 60 KDa single protein able to bind to the inner perivitelline layer. To identify possible roles of membrane rafts, quantitative proteomics, combined with a stable isotope dimethyl labeling approach, identified 82 proteins exclusively or relatively more associated with membrane rafts. Our results demonstrate the functional distinctions between membrane domains and provide compelling evidence that membrane rafts are involved in various cellular pathways inherent to chicken sperm.

Clomipramine counteracts lipid raft disturbance due to short-term muscle disuse.

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Bryndina, Irina G; Shalagina, Maria N; Sekunov, Alexey V; Zefirov, Andrei L; Petrov, Alexey M

2018-01-18

Disuse-induced skeletal muscle dysfunction is a serious consequence of long-term spaceflight, numerous diseases and conditions for which treatment possibilities are still strictly limited. We have previously shown that acute hindlimb suspension (HS)-mediated disuse disrupts membrane lipid rafts in the unloaded muscle. Here, we investigated whether pretreatment of rats with the inhibitor of acid sphingomyelinase, clomipramine (1.25mg/g/day, intramuscularly, for 5days before HS), is able to hinder the loss in lipid raft integrity in response to 12h of HS. Clomipramine pretreatment significantly counteracted the decrease in labeling of the plasma membranes with lipid raft markers (fluorescent cholera toxin B subunit and bodipy-GM1-ganglioside) specifically in the junctional regions of the suspended soleus muscle. This was associated with: a) enhancing raft disrupting potential of exogenous sphingomyelinase in the junctional membranes; b) prevention of both ceramide accumulation and cholesterol loss; c) prevention of decline in nicotinic acetylcholine receptor labeling in the unloaded muscle. Our data suggest that sphingomyelinase-mediated raft disturbance serves as one of the earlier events in HS effects. Copyright © 2017 Elsevier B.V. All rights reserved.

Modelling radiative transfer through ponded first-year Arctic sea ice with a plane-parallel model

Directory of Open Access Journals (Sweden)

T. Taskjelle

2017-09-01

Full Text Available Under-ice irradiance measurements were done on ponded first-year pack ice along three transects during the ICE12 expedition north of Svalbard. Bulk transmittances (400–900 nm were found to be on average 0.15–0.20 under bare ice, and 0.39–0.46 under ponded ice. Radiative transfer modelling was done with a plane-parallel model. While simulated transmittances deviate significantly from measured transmittances close to the edge of ponds, spatially averaged bulk transmittances agree well. That is, transect-average bulk transmittances, calculated using typical simulated transmittances for ponded and bare ice weighted by the fractional coverage of the two surface types, are in good agreement with the measured values. Radiative heating rates calculated from model output indicates that about 20 % of the incident solar energy is absorbed in bare ice, and 50 % in ponded ice (35 % in pond itself, 15 % in the underlying ice. This large difference is due to the highly scattering surface scattering layer (SSL increasing the albedo of the bare ice.

Modelling radiative transfer through ponded first-year Arctic sea ice with a plane-parallel model

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Taskjelle, Torbjørn; Hudson, Stephen R.; Granskog, Mats A.; Hamre, Børge

2017-09-01

Under-ice irradiance measurements were done on ponded first-year pack ice along three transects during the ICE12 expedition north of Svalbard. Bulk transmittances (400-900 nm) were found to be on average 0.15-0.20 under bare ice, and 0.39-0.46 under ponded ice. Radiative transfer modelling was done with a plane-parallel model. While simulated transmittances deviate significantly from measured transmittances close to the edge of ponds, spatially averaged bulk transmittances agree well. That is, transect-average bulk transmittances, calculated using typical simulated transmittances for ponded and bare ice weighted by the fractional coverage of the two surface types, are in good agreement with the measured values. Radiative heating rates calculated from model output indicates that about 20 % of the incident solar energy is absorbed in bare ice, and 50 % in ponded ice (35 % in pond itself, 15 % in the underlying ice). This large difference is due to the highly scattering surface scattering layer (SSL) increasing the albedo of the bare ice.

Ethanol Enhances TGF-β Activity by Recruiting TGF-β Receptors From Intracellular Vesicles/Lipid Rafts/Caveolae to Non-Lipid Raft Microdomains.

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Huang, Shuan Shian; Chen, Chun-Lin; Huang, Franklin W; Johnson, Frank E; Huang, Jung San

2016-04-01

Regular consumption of moderate amounts of ethanol has important health benefits on atherosclerotic cardiovascular disease (ASCVD). Overindulgence can cause many diseases, particularly alcoholic liver disease (ALD). The mechanisms by which ethanol causes both beneficial and harmful effects on human health are poorly understood. Here we demonstrate that ethanol enhances TGF-β-stimulated luciferase activity with a maximum of 0.5-1% (v/v) in Mv1Lu cells stably expressing a luciferase reporter gene containing Smad2-dependent elements. In Mv1Lu cells, 0.5% ethanol increases the level of P-Smad2, a canonical TGF-β signaling sensor, by ∼ 2-3-fold. Ethanol (0.5%) increases cell-surface expression of the type II TGF-β receptor (TβR-II) by ∼ 2-3-fold from its intracellular pool, as determined by I(125) -TGF-β-cross-linking/Western blot analysis. Sucrose density gradient ultracentrifugation and indirect immunofluorescence staining analyses reveal that ethanol (0.5% and 1%) also displaces cell-surface TβR-I and TβR-II from lipid rafts/caveolae and facilitates translocation of these receptors to non-lipid raft microdomains where canonical signaling occurs. These results suggest that ethanol enhances canonical TGF-β signaling by increasing non-lipid raft microdomain localization of the TGF-β receptors. Since TGF-β plays a protective role in ASCVD but can also cause ALD, the TGF-β enhancer activity of ethanol at low and high doses appears to be responsible for both beneficial and harmful effects. Ethanol also disrupts the location of lipid raft/caveolae of other membrane proteins (e.g., neurotransmitter, growth factor/cytokine, and G protein-coupled receptors) which utilize lipid rafts/caveolae as signaling platforms. Displacement of these membrane proteins induced by ethanol may result in a variety of pathologies in nerve, heart and other tissues. © 2015 Wiley Periodicals, Inc.

An object-oriented, coprocessor-accelerated model for ice sheet simulations

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Seddik, H.; Greve, R.

2013-12-01

Recently, numerous models capable of modeling the thermo-dynamics of ice sheets have been developed within the ice sheet modeling community. Their capabilities have been characterized by a wide range of features with different numerical methods (finite difference or finite element), different implementations of the ice flow mechanics (shallow-ice, higher-order, full Stokes) and different treatments for the basal and coastal areas (basal hydrology, basal sliding, ice shelves). Shallow-ice models (SICOPOLIS, IcIES, PISM, etc) have been widely used for modeling whole ice sheets (Greenland and Antarctica) due to the relatively low computational cost of the shallow-ice approximation but higher order (ISSM, AIF) and full Stokes (Elmer/Ice) models have been recently used to model the Greenland ice sheet. The advance in processor speed and the decrease in cost for accessing large amount of memory and storage have undoubtedly been the driving force in the commoditization of models with higher capabilities, and the popularity of Elmer/Ice (http://elmerice.elmerfem.com) with an active user base is a notable representation of this trend. Elmer/Ice is a full Stokes model built on top of the multi-physics package Elmer (http://www.csc.fi/english/pages/elmer) which provides the full machinery for the complex finite element procedure and is fully parallel (mesh partitioning with OpenMPI communication). Elmer is mainly written in Fortran 90 and targets essentially traditional processors as the code base was not initially written to run on modern coprocessors (yet adding support for the recently introduced x86 based coprocessors is possible). Furthermore, a truly modular and object-oriented implementation is required for quick adaptation to fast evolving capabilities in hardware (Fortran 2003 provides an object-oriented programming model while not being clean and requiring a tricky refactoring of Elmer code). In this work, the object-oriented, coprocessor-accelerated finite element

Effect of Dialkyl Ammonium Cationic Surfactants on the Microfluidity of Membranes Containing Raft Domains.

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Uyama, Makoto; Inoue, Kaori; Kinoshita, Koichi; Miyahara, Reiji; Yokoyama, Hirokazu; Nakano, Minoru

2018-01-01

It has been reported that a lot of receptors localize in lipid raft domains and that the microfluidity of these domains regulates the activation of these receptors. In this study, we focused on the lipid raft and in order to evaluate the physicochemical effects of surfactants on microfluidity of lipid membranes, we used liposomes comprising of egg-yolk L-α-phosphatidylcholine, egg-yolk sphingomyelin, and cholesterol as a model of cell membranes containing raft domains. The microfluidity of the domains was characterized by fluorescence spectrometry using 1,6-diphenyl-1,3,5-hexatriene and 2-dimethylamino-6-lauroylnaphthalene. Among several surfactants, dialkylammonium-type cationic surfactants most efficiently increased the microfluidity. It is therefore concluded that (1) the electrostatic interaction between the cationic surfactant and eggPC/eggSM/cholesterol liposome could be important, (2) surfactants with alkyl chains more effectively inserted into membranes than those with acyl chains, and (3) cationic surfactants with lower T m values have a greater ability to increase the fluidity.

Coupled model of INM-IO global ocean model, CICE sea ice model and SCM OIAS framework

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Bayburin, Ruslan; Rashit, Ibrayev; Konstantin, Ushakov; Vladimir, Kalmykov; Gleb, Dyakonov

2015-04-01

Status of coupled Arctic model of ocean and sea ice is presented. Model consists of INM IO global ocean component of high resolution, Los Alamos National Laboratory CICE sea ice model and a framework SCM OIAS for the ocean-ice-atmosphere-land coupled modeling on massively-parallel architectures. Model is currently under development at the Institute of Numerical Mathematics (INM), Hydrometeorological Center (HMC) and P.P. Shirshov Institute of Oceanology (IO). Model is aimed at modeling of intra-annual variability of hydrodynamics in Arctic and. The computational characteristics of the world ocean-sea ice coupled model governed by SCM OIAS are presented. The model is parallelized using MPI technologies and currently can use efficiently up to 5000 cores. Details of programming implementation, computational configuration and physical phenomena parametrization are analyzed in terms of intercoupling complex. Results of five year computational experiment of sea ice, snow and ocean state evolution in Arctic region on tripole grid with horizontal resolution of 3-5 kilometers, closed by atmospheric forcing field from repeating "normal" annual course taken from CORE1 experiment data base are presented and analyzed in terms of the state of vorticity and warm Atlantic water expansion.

Importance of aggregation and small ice crystals in cirrus clouds, based on observations and an ice particle growth model

Science.gov (United States)

Mitchell, David L.; Chai, Steven K.; Dong, Yayi; Arnott, W. Patrick; Hallett, John

1993-01-01

The 1 November 1986 FIRE I case study was used to test an ice particle growth model which predicts bimodal size spectra in cirrus clouds. The model was developed from an analytically based model which predicts the height evolution of monomodal ice particle size spectra from the measured ice water content (IWC). Size spectra from the monomodal model are represented by a gamma distribution, N(D) = N(sub o)D(exp nu)exp(-lambda D), where D = ice particle maximum dimension. The slope parameter, lambda, and the parameter N(sub o) are predicted from the IWC through the growth processes of vapor diffusion and aggregation. The model formulation is analytical, computationally efficient, and well suited for incorporation into larger models. The monomodal model has been validated against two other cirrus cloud case studies. From the monomodal size spectra, the size distributions which determine concentrations of ice particles less than about 150 mu m are predicted.

The implementation of sea ice model on a regional high-resolution scale

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Prasad, Siva; Zakharov, Igor; Bobby, Pradeep; McGuire, Peter

2015-09-01

The availability of high-resolution atmospheric/ocean forecast models, satellite data and access to high-performance computing clusters have provided capability to build high-resolution models for regional ice condition simulation. The paper describes the implementation of the Los Alamos sea ice model (CICE) on a regional scale at high resolution. The advantage of the model is its ability to include oceanographic parameters (e.g., currents) to provide accurate results. The sea ice simulation was performed over Baffin Bay and the Labrador Sea to retrieve important parameters such as ice concentration, thickness, ridging, and drift. Two different forcing models, one with low resolution and another with a high resolution, were used for the estimation of sensitivity of model results. Sea ice behavior over 7 years was simulated to analyze ice formation, melting, and conditions in the region. Validation was based on comparing model results with remote sensing data. The simulated ice concentration correlated well with Advanced Microwave Scanning Radiometer for EOS (AMSR-E) and Ocean and Sea Ice Satellite Application Facility (OSI-SAF) data. Visual comparison of ice thickness trends estimated from the Soil Moisture and Ocean Salinity satellite (SMOS) agreed with the simulation for year 2010-2011.

Testing the reliability of ice-cream cone model

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Pan, Zonghao; Shen, Chenglong; Wang, Chuanbing; Liu, Kai; Xue, Xianghui; Wang, Yuming; Wang, Shui

2015-04-01

Coronal Mass Ejections (CME)'s properties are important to not only the physical scene itself but space-weather prediction. Several models (such as cone model, GCS model, and so on) have been raised to get rid of the projection effects within the properties observed by spacecraft. According to SOHO/ LASCO observations, we obtain the 'real' 3D parameters of all the FFHCMEs (front-side full halo Coronal Mass Ejections) within the 24th solar cycle till July 2012, by the ice-cream cone model. Considering that the method to obtain 3D parameters from the CME observations by multi-satellite and multi-angle has higher accuracy, we use the GCS model to obtain the real propagation parameters of these CMEs in 3D space and compare the results with which by ice-cream cone model. Then we could discuss the reliability of the ice-cream cone model.

Tidal Modulation of Ice-shelf Flow: a Viscous Model of the Ross Ice Shelf

Science.gov (United States)

Brunt, Kelly M.; MacAyeal, Douglas R.

2014-01-01

Three stations near the calving front of the Ross Ice Shelf, Antarctica, recorded GPS data through a full spring-neap tidal cycle in November 2005. The data revealed a diurnal horizontal motion that varied both along and transverse to the long-term average velocity direction, similar to tidal signals observed in other ice shelves and ice streams. Based on its periodicity, it was hypothesized that the signal represents a flow response of the Ross Ice Shelf to the diurnal tides of the Ross Sea. To assess the influence of the tide on the ice-shelf motion, two hypotheses were developed. The first addressed the direct response of the ice shelf to tidal forcing, such as forces due to sea-surface slopes or forces due to sub-ice-shelf currents. The second involved the indirect response of ice-shelf flow to the tidal signals observed in the ice streams that source the ice shelf. A finite-element model, based on viscous creep flow, was developed to test these hypotheses, but succeeded only in falsifying both hypotheses, i.e. showing that direct tidal effects produce too small a response, and indirect tidal effects produce a response that is not smooth in time. This nullification suggests that a combination of viscous and elastic deformation is required to explain the observations.

Fluorescent Labeling and Biodistribution of Latex Nanoparticles Formed by Surfactant-Free RAFT Emulsion Polymerization.

Science.gov (United States)

Poon, Cheuk Ka; Tang, Owen; Chen, Xin-Ming; Kim, Byung; Hartlieb, Matthias; Pollock, Carol A; Hawkett, Brian S; Perrier, Sébastien

2017-10-01

The authors report the preparation of a novel range of functional polyacrylamide stabilized polystyrene nanoparticles, obtained by surfactant-free reversible addition-fragmentation chain transfer (RAFT) emulsion polymerization, their fluorescent tagging, cellular uptake, and biodistribution. The authors show the versatility of the RAFT emulsion process for the design of functional nanoparticles of well-defined size that can be used as drug delivery vectors. Functionalization with a fluorescent tag offers a useful visualization tool for tracing, localization, and clearance studies of these carriers in biological models. The studies are carried out by labeling the sterically stabilized latex particles chemically with rhodamine B. The fluorescent particles are incubated in a healthy human renal proximal tubular cell line model, and intravenously injected into a mouse model. Cellular localization and biodistribution of these particles on the biological models are explored. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Study on design method and vibration reduction characteristic of floating raft with periodic structure

Science.gov (United States)

Fang, Yuanyuan; Zuo, Yanyan; Xia, Zhaowang

2018-03-01

The noise level is getting higher with the development of high-power marine power plant. Mechanical noise is one of the most obvious noise sources which not only affect equipment reliability, riding comfort and working environment, but also enlarge underwater noise. The periodic truss type device which is commonly applied in fields of aerospace and architectural is introduced to floating raft construction in ship. Four different raft frame structure are designed in the paper. The vibration transmissibility is taken as an evaluation index to measure vibration isolation effect. A design scheme with the best vibration isolation effect is found by numerical method. Plate type and the optimized periodic truss type raft frame structure are processed to experimental verify vibration isolation effect of the structure of the periodic raft. The experimental results demonstrate that the same quality of the periodic truss floating raft has better isolation effect than that of the plate type floating raft.

pH responsive alginate polymeric rafts for controlled drug release by using box behnken response surface design.

Science.gov (United States)

Abbas, Ghulam; Hanif, Muhammad; Khan, Mahtab Ahmad

2017-01-01

Aim of the present work was to develop alginate raft forming tablets for controlled release pantoprazole sodium sesquihydrate (PSS). Box behnken design was used to optimize 15 formulations with three independent and three dependent variables. Physical tests of all formulations were within pharmacopoeial limits. Raft was characterized by their strength, thickness, resilience, acid neutralizing capacity, floating lag time and total floating time. Raft strength, thickness and resilience of optimized formulation AR9 were 7.43 ± 0.019 g, 5.8 ± 0.245 cm and greater than 480 min, respectively. Buffering and neutralizing capacity were 11.2 ± 1.01 and 6.5 ± 0.56 meq, respectively. Dissolution studies were performed by using simulated gastric fluid pH 1.2 and cumulative percentage release of optimized formulation AR9 was found 98%. First order release kinetics were followed and non-fickian diffusion was observed as value of n was greater than 0.45 in korsmeyer-peppas model. PSS, polymers, tablets and rafts were further characterized by Fourier transform infrared spectroscopy (FTIR), X-ray diffractometry (XRD) and differential scanning calorimetry (DSC). FTIR spectra of PSS, polymers and raft of optimized formulation AR9 showed peaks at 3223.09, 1688.17, 1586.67, 1302.64 and 1027.74 cm -1 due to -OH stretching, ester carbonyl group (C=O) stretching, existence of water and carboxylic group in raft, C-N stretching and -OH bending vibration showed no interaction between them. XRD showed diffraction lines indicates crystalline nature of PSS. DSC thermogram showed endothermic peaks at 250 °C for PSS. The developed raft was suitable for controlled release delivery of PSS.

Free oscillations in a climate model with ice-sheet dynamics

Science.gov (United States)

Kallen, E.; Crafoord, C.; Ghil, M.

1979-01-01

A study of stable periodic solutions to a simple nonlinear model of the ocean-atmosphere-ice system is presented. The model has two dependent variables: ocean-atmosphere temperature and latitudinal extent of the ice cover. No explicit dependence on latitude is considered in the model. Hence all variables depend only on time and the model consists of a coupled set of nonlinear ordinary differential equations. The globally averaged ocean-atmosphere temperature in the model is governed by the radiation balance. The reflectivity to incoming solar radiation, i.e., the planetary albedo, includes separate contributions from sea ice and from continental ice sheets. The major physical mechanisms active in the model are (1) albedo-temperature feedback, (2) continental ice-sheet dynamics and (3) precipitation-rate variations. The model has three-equilibrium solutions, two of which are linearly unstable, while one is linearly stable. For some choices of parameters, the stability picture changes and sustained, finite-amplitude oscillations obtain around the previously stable equilibrium solution. The physical interpretation of these oscillations points to the possibility of internal mechanisms playing a role in glaciation cycles.

Bimodal SLD Ice Accretion on a NACA 0012 Airfoil Model

Science.gov (United States)

Potapczuk, Mark; Tsao, Jen-Ching; King-Steen, Laura

2016-01-01

This presentation describes the results of ice accretion measurements on a NACA 0012 airfoil model, from the NASA Icing Research Tunnel, using an icing cloud composed of a bimodal distribution of Supercooled Large Droplets. The data consists of photographs, laser scans of the ice surface, and measurements of the mass of ice for each icing condition. The results of ice shapes accumulated as a result of exposure to an icing cloud with a bimodal droplet distribution were compared to the ice shapes resulting from an equivalent cloud composed of a droplet distribution with a standard bell curve shape.

A theory-based parameterization for heterogeneous ice nucleation and implications for the simulation of ice processes in atmospheric models

Science.gov (United States)

Savre, J.; Ekman, A. M. L.

2015-05-01

A new parameterization for heterogeneous ice nucleation constrained by laboratory data and based on classical nucleation theory is introduced. Key features of the parameterization include the following: a consistent and modular modeling framework for treating condensation/immersion and deposition freezing, the possibility to consider various potential ice nucleating particle types (e.g., dust, black carbon, and bacteria), and the possibility to account for an aerosol size distribution. The ice nucleating ability of each aerosol type is described using a contact angle (θ) probability density function (PDF). A new modeling strategy is described to allow the θ PDF to evolve in time so that the most efficient ice nuclei (associated with the lowest θ values) are progressively removed as they nucleate ice. A computationally efficient quasi Monte Carlo method is used to integrate the computed ice nucleation rates over both size and contact angle distributions. The parameterization is employed in a parcel model, forced by an ensemble of Lagrangian trajectories extracted from a three-dimensional simulation of a springtime low-level Arctic mixed-phase cloud, in order to evaluate the accuracy and convergence of the method using different settings. The same model setup is then employed to examine the importance of various parameters for the simulated ice production. Modeling the time evolution of the θ PDF is found to be particularly crucial; assuming a time-independent θ PDF significantly overestimates the ice nucleation rates. It is stressed that the capacity of black carbon (BC) to form ice in the condensation/immersion freezing mode is highly uncertain, in particular at temperatures warmer than -20°C. In its current version, the parameterization most likely overestimates ice initiation by BC.

Citrulline diet supplementation improves specific age-related raft changes in wild-type rodent hippocampus.

Science.gov (United States)

Marquet-de Rougé, Perrine; Clamagirand, Christine; Facchinetti, Patricia; Rose, Christiane; Sargueil, Françoise; Guihenneuc-Jouyaux, Chantal; Cynober, Luc; Moinard, Christophe; Allinquant, Bernadette

2013-10-01

The levels of molecules crucial for signal transduction processing change in the brain with aging. Lipid rafts are membrane microdomains involved in cell signaling. We describe here substantial biophysical and biochemical changes occurring within the rafts in hippocampus neurons from aging wild-type rats and mice. Using continuous sucrose density gradients, we observed light-, medium-, and heavy raft subpopulations in young adult rodent hippocampus neurons containing very low levels of amyloid precursor protein (APP) and almost no caveolin-1 (CAV-1). By contrast, old rodents had a homogeneous age-specific high-density caveolar raft subpopulation containing significantly more cholesterol (CHOL), CAV-1, and APP. C99-APP-Cter fragment detection demonstrates that the first step of amyloidogenic APP processing takes place in this caveolar structure during physiological aging of the rat brain. In this age-specific caveolar raft subpopulation, levels of the C99-APP-Cter fragment are exponentially correlated with those of APP, suggesting that high APP concentrations may be associated with a risk of large increases in beta-amyloid peptide levels. Citrulline (an intermediate amino acid of the urea cycle) supplementation in the diet of aged rats for 3 months reduced these age-related hippocampus raft changes, resulting in raft patterns tightly close to those in young animals: CHOL, CAV-1, and APP concentrations were significantly lower and the C99-APP-Cter fragment was less abundant in the heavy raft subpopulation than in controls. Thus, we report substantial changes in raft structures during the aging of rodent hippocampus and describe new and promising areas of investigation concerning the possible protective effect of citrulline on brain function during aging.

Ab-Initio-Based Kinetic Modeling to Understand RAFT Exchange: The Case of 2-Cyano-2-Propyl Dodecyl Trithiocarbonate and Styrene.

Science.gov (United States)

Desmet, Gilles B; De Rybel, Nils; Van Steenberge, Paul H M; D'hooge, Dagmar R; Reyniers, Marie-Françoise; Marin, Guy B

2018-01-01

Ab-initio-calculated rate coefficients for addition and fragmentation in reversible-addition fragmentation chain transfer (RAFT) polymerization of styrene with 2-cyano-2-propyl dodecyl trithiocarbonate initiated by azobisisobutyronitrile allow the reliable simulation of the experimentally observed conversion, number average chain length, and dispersity. The rate coefficient for addition of a macroradical R i to the macroRAFT agent R i X at 333 K (6.8 10 4 L mol -1 s -1 ) is significantly lower than to the initial RAFT agent R 0 X (3.2 10 6 L mol -1 s -1 ), mainly due to a difference in activation energy (15.4 vs 3.0 kJ mol -1 ), which causes the dispersity to spike in the beginning of the polymerization. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

An ice flow modeling perspective on bedrock adjustment patterns of the Greenland ice sheet

Directory of Open Access Journals (Sweden)

M. Olaizola

2012-11-01

Full Text Available Since the launch in 2002 of the Gravity Recovery and Climate Experiment (GRACE satellites, several estimates of the mass balance of the Greenland ice sheet (GrIS have been produced. To obtain ice mass changes, the GRACE data need to be corrected for the effect of deformation changes of the Earth's crust. Recently, a new method has been proposed where ice mass changes and bedrock changes are simultaneously solved. Results show bedrock subsidence over almost the entirety of Greenland in combination with ice mass loss which is only half of the currently standing estimates. This subsidence can be an elastic response, but it may however also be a delayed response to past changes. In this study we test whether these subsidence patterns are consistent with ice dynamical modeling results. We use a 3-D ice sheet–bedrock model with a surface mass balance forcing based on a mass balance gradient approach to study the pattern and magnitude of bedrock changes in Greenland. Different mass balance forcings are used. Simulations since the Last Glacial Maximum yield a bedrock delay with respect to the mass balance forcing of nearly 3000 yr and an average uplift at present of 0.3 mm yr⁻¹. The spatial pattern of bedrock changes shows a small central subsidence as well as more intense uplift in the south. These results are not compatible with the gravity based reconstructions showing a subsidence with a maximum in central Greenland, thereby questioning whether the claim of halving of the ice mass change is justified.

Mapping of a Hydrological Ice Sheet Drainage Basin on the West Greenland Ice Sheet Margin from ERS-1/2 SAR Interferometry, Ice-Radar Measurement, and Modelling

DEFF Research Database (Denmark)

Ahlstrøm, Andreas P.; Bøggild, C.E.; Stenseng, L.

2002-01-01

importance of the potential of the ice overburden pressure compared to the bedrock topography. The meltwater run-off for the basin delineations was modelled with an energy-balance model calibrated with observed ice-sheet ablation and compared to a 25 year time series of measured basin run-off. The standard......The hydrological ice-sheet basin draining into the Tasersiaq lake, West Greenland (66°13'N, 50°30'W), was delineated, First using standard digital elevation models (DEMs) for ice-sheet surface and bedrock, and subsequently using a new high-resolution dataset, with a surface DEM derived from repeat......-track interferometric synthetic aperture radar (SAR) and a bedrock topography derived from an airborne 60 MHz ice-penetrating radar. The extent of the delineation was calculated from a water-pressure potential as a function of the ice-sheet surface and bedrock elevations and a hydraulic factor κ describing the relative...

Current state and future perspectives on coupled ice-sheet - sea-level modelling

Science.gov (United States)

de Boer, Bas; Stocchi, Paolo; Whitehouse, Pippa L.; van de Wal, Roderik S. W.

2017-08-01

The interaction between ice-sheet growth and retreat and sea-level change has been an established field of research for many years. However, recent advances in numerical modelling have shed new light on the precise interaction of marine ice sheets with the change in near-field sea level, and the related stability of the grounding line position. Studies using fully coupled ice-sheet - sea-level models have shown that accounting for gravitationally self-consistent sea-level change will act to slow down the retreat and advance of marine ice-sheet grounding lines. Moreover, by simultaneously solving the 'sea-level equation' and modelling ice-sheet flow, coupled models provide a global field of relative sea-level change that is consistent with dynamic changes in ice-sheet extent. In this paper we present an overview of recent advances, possible caveats, methodologies and challenges involved in coupled ice-sheet - sea-level modelling. We conclude by presenting a first-order comparison between a suite of relative sea-level data and output from a coupled ice-sheet - sea-level model.

Inhibition of Akt signaling by exclusion from lipid rafts in normal and transformed epidermal keratinocytes

DEFF Research Database (Denmark)

Calay, Damien; Vind-Kezunovic, Dina; Frankart, Aurelie

2010-01-01

Lipid rafts are cholesterol-rich plasma membrane domains that regulate signal transduction. Because our earlier work indicated that raft disruption inhibited proliferation and caused cell death, we investigated here the role of membrane cholesterol, the crucial raft constituent, in the regulation...... of the phosphatidylinositol-3 kinase (PI3K)/Akt pathway. Raft disruption was achieved in normal human keratinocytes and precancerous (HaCaT) or transformed (A431) keratinocytes by cholesterol extraction or inactivation with methyl-beta-cyclodextrin, filipin III, or 5-cholestene-5-beta-ol. Lipid raft disruption did not affect...... in deactivation of mammalian target of rapamycin, activation of FoxO3a, and increased sensitivity to apoptosis stimuli. Lipid raft disruption abrogated the binding of Akt and the major Akt kinase, phosphatidylinositol-dependent kinase 1, to the membrane by pleckstrin-homology domains. Thus, the integrity of lipid...

Limbal Fibroblasts Maintain Normal Phenotype in 3D RAFT Tissue Equivalents Suggesting Potential for Safe Clinical Use in Treatment of Ocular Surface Failure.

Science.gov (United States)

Massie, Isobel; Dale, Sarah B; Daniels, Julie T

2015-06-01

Limbal epithelial stem cell deficiency can cause blindness, but transplantation of these cells on a carrier such as human amniotic membrane can restore vision. Unfortunately, clinical graft manufacture using amnion can be inconsistent. Therefore, we have developed an alternative substrate, Real Architecture for 3D Tissue (RAFT), which supports human limbal epithelial cells (hLE) expansion. Epithelial organization is improved when human limbal fibroblasts (hLF) are incorporated into RAFT tissue equivalent (TE). However, hLF have the potential to transdifferentiate into a pro-scarring cell type, which would be incompatible with therapeutic transplantation. The aim of this work was to assess the scarring phenotype of hLF in RAFT TEs in hLE+ and hLE- RAFT TEs and in nonairlifted and airlifted RAFT TEs. Diseased fibroblasts (dFib) isolated from the fibrotic conjunctivae of ocular mucous membrane pemphigoid (Oc-MMP) patients were used as a pro-scarring positive control against which hLF were compared using surrogate scarring parameters: matrix metalloproteinase (MMP) activity, de novo collagen synthesis, α-smooth muscle actin (α-SMA) expression, and transforming growth factor-β (TGF-β) secretion. Normal hLF and dFib maintained different phenotypes in RAFT TE. MMP-2 and -9 activity, de novo collagen synthesis, and α-SMA expression were all increased in dFib cf. normal hLF RAFT TEs, although TGF-β1 secretion did not differ between normal hLF and dFib RAFT TEs. Normal hLF do not progress toward a scarring-like phenotype during culture in RAFT TEs and, therefore, may be safe to include in therapeutic RAFT TE, where they can support hLE, although in vivo work is required to confirm this. dFib RAFT TEs (used in this study as a positive control) may be useful toward the development of an ex vivo disease model of Oc-MMP.

The Potsdam Parallel Ice Sheet Model (PISM-PIK) - Part 2: Dynamic equilibrium simulation of the Antarctic ice sheet

Science.gov (United States)

Martin, M. A.; Winkelmann, R.; Haseloff, M.; Albrecht, T.; Bueler, E.; Khroulev, C.; Levermann, A.

2011-09-01

We present a dynamic equilibrium simulation of the ice sheet-shelf system on Antarctica with the Potsdam Parallel Ice Sheet Model (PISM-PIK). The simulation is initialized with present-day conditions for bed topography and ice thickness and then run to steady state with constant present-day surface mass balance. Surface temperature and sub-shelf basal melt distribution are parameterized. Grounding lines and calving fronts are free to evolve, and their modeled equilibrium state is compared to observational data. A physically-motivated calving law based on horizontal spreading rates allows for realistic calving fronts for various types of shelves. Steady-state dynamics including surface velocity and ice flux are analyzed for whole Antarctica and the Ronne-Filchner and Ross ice shelf areas in particular. The results show that the different flow regimes in sheet and shelves, and the transition zone between them, are captured reasonably well, supporting the approach of superposition of SIA and SSA for the representation of fast motion of grounded ice. This approach also leads to a natural emergence of sliding-dominated flow in stream-like features in this new 3-D marine ice sheet model.

Juvenile-onset loss of lipid-raft domains in attractin-deficient mice

International Nuclear Information System (INIS)

Azouz, Abdallah; Gunn, Teresa M.; Duke-Cohan, Jonathan S.

2007-01-01

Mutations at the attractin (Atrn) locus in mice result in altered pigmentation on an agouti background, higher basal metabolic rate and juvenile-onset hypomyelination leading to neurodegeneration, while studies on human immune cells indicate a chemotaxis regulatory function. The underlying biochemical defect remains elusive. In this report we identify a role for attractin in plasma membrane maintenance. In attractin's absence there is a decline in plasma membrane glycolipid-enriched rafts from normal levels at 8 weeks to a complete absence by 24 weeks. The structural integrity of lipid rafts depends upon cholesterol and sphingomyelin, and can be identified by partitioning within of ganglioside GM 1 . Despite a significant fall in cellular cholesterol with maturity, and a lesser fall in both membrane and total cellular GM 1 , these parameters lag behind raft loss, and are normal when hypomyelination/neurodegeneration has already begun thus supporting consequence rather than cause. These findings can be recapitulated in Atrn-deficient cell lines propagated in vitro. Further, signal transduction through complex membrane receptor assemblies is not grossly disturbed despite the complete absence of lipid rafts. We find these results compatible with a role for attractin in plasma membrane maintenance and consistent with the proposal that the juvenile-onset hypomyelination and neurodegeneration represent a defect in attractin-mediated raft-dependent myelin biogenesis

Inhibition of Akt signaling by exclusion from lipid rafts in normal and transformed epidermal keratinocytes

DEFF Research Database (Denmark)

Calay, Damien; Vind-Kezunovic, Dina; Frankart, Aurelie

2010-01-01

Lipid rafts are cholesterol-rich plasma membrane domains that regulate signal transduction. Because our earlier work indicated that raft disruption inhibited proliferation and caused cell death, we investigated here the role of membrane cholesterol, the crucial raft constituent, in the regulation...

The multiphase physics of sea ice: a review for model developers

Directory of Open Access Journals (Sweden)

E. C. Hunke

2011-11-01

Full Text Available Rather than being solid throughout, sea ice contains liquid brine inclusions, solid salts, microalgae, trace elements, gases, and other impurities which all exist in the interstices of a porous, solid ice matrix. This multiphase structure of sea ice arises from the fact that the salt that exists in seawater cannot be incorporated into lattice sites in the pure ice component of sea ice, but remains in liquid solution. Depending on the ice permeability (determined by temperature, salinity and gas content, this brine can drain from the ice, taking other sea ice constituents with it. Thus, sea ice salinity and microstructure are tightly interconnected and play a significant role in polar ecosystems and climate. As large-scale climate modeling efforts move toward "earth system" simulations that include biological and chemical cycles, renewed interest in the multiphase physics of sea ice has strengthened research initiatives to observe, understand and model this complex system. This review article provides an overview of these efforts, highlighting known difficulties and requisite observations for further progress in the field. We focus on mushy layer theory, which describes general multiphase materials, and on numerical approaches now being explored to model the multiphase evolution of sea ice and its interaction with chemical, biological and climate systems.

Sea-level and solid-Earth deformation feedbacks in ice sheet modelling

Science.gov (United States)

Konrad, Hannes; Sasgen, Ingo; Klemann, Volker; Thoma, Malte; Grosfeld, Klaus; Martinec, Zdeněk

2014-05-01

The interactions of ice sheets with the sea level and the solid Earth are important factors for the stability of the ice shelves and the tributary inland ice (e.g. Thomas and Bentley, 1978; Gomez et al, 2012). First, changes in ice extent and ice thickness induce viscoelastic deformation of the Earth surface and Earth's gravity field. In turn, global and local changes in sea level and bathymetry affect the grounding line and, subsequently, alter the ice dynamic behaviour. Here, we investigate these feedbacks for a synthetic ice sheet configuration as well as for the Antarctic ice sheet using a three-dimensional thermomechanical ice sheet and shelf model, coupled to a viscoelastic solid-Earth and gravitationally self-consistent sea-level model. The respective ice sheet undergoes a forcing from rising sea level, warming ocean, and/or changing surface mass balance. The coupling is realized by exchanging ice thickness, Earth surface deformation and sea level periodically. We apply several sets of viscoelastic Earth parameters to our coupled model, e.g. simulating a low-viscous upper mantle present at the Antarctic Peninsula (Ivins et al., 2011). Special focus of our study lies on the evolution of Earth surface deformation and local sea level changes, as well as on the accompanying grounding line evolution. N. Gomez, D. Pollard, J. X. Mitrovica, P. Huybers, and P. U. Clark 2012. Evolution of a coupled marine ice sheet-sea level model, J. Geophys. Res., 117, F01013, doi:10.1029/2011JF002128. E. R. Ivins, M. M. Watkins, D.-N. Yuan, R. Dietrich, G. Casassa, and A. Rülke 2011. On-land ice loss and glacial isostatic adjustment at the Drake Passage: 2003-2009, J. Geophys. Res. 116, B02403, doi: 10.1029/2010JB007607 R. H. Thomas and C. R. Bentley 1978. A model for Holocene retreat of the West Antarctic Ice Sheet, Quaternary Research, 10 (2), pages 150-170, doi: 10.1016/0033-5894(78)90098-4.

Simulation of the Greenland Ice Sheet over two glacial–interglacial cycles: investigating a sub-ice-shelf melt parameterization and relative sea level forcing in an ice-sheet–ice-shelf model

Directory of Open Access Journals (Sweden)

S. L. Bradley

2018-05-01

Full Text Available Observational evidence, including offshore moraines and sediment cores, confirm that at the Last Glacial Maximum (LGM the Greenland ice sheet (GrIS expanded to a significantly larger spatial extent than seen at present, grounding into Baffin Bay and out onto the continental shelf break. Given this larger spatial extent and its close proximity to the neighbouring Laurentide Ice Sheet (LIS and Innuitian Ice Sheet (IIS, it is likely these ice sheets will have had a strong non-local influence on the spatial and temporal behaviour of the GrIS. Most previous paleo ice-sheet modelling simulations recreated an ice sheet that either did not extend out onto the continental shelf or utilized a simplified marine ice parameterization which did not fully include the effect of ice shelves or neglected the sensitivity of the GrIS to this non-local bedrock signal from the surrounding ice sheets. In this paper, we investigated the evolution of the GrIS over the two most recent glacial–interglacial cycles (240 ka BP to the present day using the ice-sheet–ice-shelf model IMAU-ICE. We investigated the solid earth influence of the LIS and IIS via an offline relative sea level (RSL forcing generated by a glacial isostatic adjustment (GIA model. The RSL forcing governed the spatial and temporal pattern of sub-ice-shelf melting via changes in the water depth below the ice shelves. In the ensemble of simulations, at the glacial maximums, the GrIS coalesced with the IIS to the north and expanded to the continental shelf break to the southwest but remained too restricted to the northeast. In terms of the global mean sea level contribution, at the Last Interglacial (LIG and LGM the ice sheet added 1.46 and −2.59 m, respectively. This LGM contribution by the GrIS is considerably higher (∼  1.26 m than most previous studies whereas the contribution to the LIG highstand is lower (∼  0.7 m. The spatial and temporal behaviour of the northern margin was

Lipid raft organization and function in the small intestinal brush border

DEFF Research Database (Denmark)

Danielsen, E M; Hansen, Gert Helge

2008-01-01

proteinases, are protected from untimely release into the gut lumen. Finally, anti-glycosyl antibodies, synthesized by plasma cells locally in the gut, are deposited on the brush border glycolipid rafts, protecting the epithelium from lumenal pathogens that exploit lipid rafts as portals for entry...... to the organism....

Modeling the evolution of the Laurentide Ice Sheet from MIS 3 to the Last Glacial Maximum: an approach using sea level modeling and ice flow dynamics

Science.gov (United States)

Weisenberg, J.; Pico, T.; Birch, L.; Mitrovica, J. X.

2017-12-01

The history of the Laurentide Ice Sheet since the Last Glacial Maximum ( 26 ka; LGM) is constrained by geological evidence of ice margin retreat in addition to relative sea-level (RSL) records in both the near and far field. Nonetheless, few observations exist constraining the ice sheet's extent across the glacial build-up phase preceding the LGM. Recent work correcting RSL records along the U.S. mid-Atlantic dated to mid-MIS 3 (50-35 ka) for glacial-isostatic adjustment (GIA) infer that the Laurentide Ice Sheet grew by more than three-fold in the 15 ky leading into the LGM. Here we test the plausibility of a late and extremely rapid glaciation by driving a high-resolution ice sheet model, based on a nonlinear diffusion equation for the ice thickness. We initialize this model at 44 ka with the mid-MIS 3 ice sheet configuration proposed by Pico et al. (2017), GIA-corrected basal topography, and mass balance representative of mid-MIS 3 conditions. These simulations predict rapid growth of the eastern Laurentide Ice Sheet, with rates consistent with achieving LGM ice volumes within 15 ky. We use these simulations to refine the initial ice configuration and present an improved and higher resolution model for North American ice cover during mid-MIS 3. In addition we show that assumptions of ice loads during the glacial phase, and the associated reconstructions of GIA-corrected basal topography, produce a bias that can underpredict ice growth rates in the late stages of the glaciation, which has important consequences for our understanding of the speed limit for ice growth on glacial timescales.

Experimental and Numerical Investigation of Towing Resistance of the Innovative Pneumatic Life Raft

Directory of Open Access Journals (Sweden)

Burciu Zbigniew

2017-06-01

Full Text Available The paper presents the experimental and numerical investigations of a novel design of a pneumatic life raft in calm water conditions. Two main issues were considered: the life raft performance under tow and its resistance in calm water conditions. The experiment and CFD simulations were performed by using the full scale prototype to eliminate the scale effect. The towing tank tests confirmed the results of numerical computations. The compatibility of the results of numerical and experimental tests was high mainly because the new life raft does not deform under the hydrodynamic and aerodynamic loads. The characteristics similar to rigid body behaviour result mainly from a new construction and materials used for manufacturing the life raft.

Lipid rafts exist as stable cholesterol-independent microdomains in the brush border membrane of enterocytes

DEFF Research Database (Denmark)

Hansen, Gert Helge; Immerdal, Lissi; Thorsen, Evy

2001-01-01

Glycosphingolipid/cholesterol-rich membranes ("rafts")can be isolated from many types of cells, but their existence as stable microdomains in the cell membrane has been elusive. Addressing this problem, we studied the distribution of galectin-4, a raft marker, and lactase, a protein excluded from...... rafts, on microvillar vesicles from the enterocyte brush border membrane. Magnetic beads coated with either anti-galectin-4 or anti-lactase antibodies were used for immunoisolation of vesicles followed by double immunogold labeling of the two proteins. A morphometric analysis revealed subpopulations...... of raft-rich and raft-poor vesicles by the following criteria: 1) the lactase/galectin-4 labeling ratio/vesicle captured by the anti-lactase beads was significantly higher (p

Regular network model for the sea ice-albedo feedback in the Arctic.

Science.gov (United States)

Müller-Stoffels, Marc; Wackerbauer, Renate

2011-03-01

The Arctic Ocean and sea ice form a feedback system that plays an important role in the global climate. The complexity of highly parameterized global circulation (climate) models makes it very difficult to assess feedback processes in climate without the concurrent use of simple models where the physics is understood. We introduce a two-dimensional energy-based regular network model to investigate feedback processes in an Arctic ice-ocean layer. The model includes the nonlinear aspect of the ice-water phase transition, a nonlinear diffusive energy transport within a heterogeneous ice-ocean lattice, and spatiotemporal atmospheric and oceanic forcing at the surfaces. First results for a horizontally homogeneous ice-ocean layer show bistability and related hysteresis between perennial ice and perennial open water for varying atmospheric heat influx. Seasonal ice cover exists as a transient phenomenon. We also find that ocean heat fluxes are more efficient than atmospheric heat fluxes to melt Arctic sea ice.

33 CFR 100.102 - Great Connecticut River Raft Race, Middletown, CT.

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Great Connecticut River Raft Race, Middletown, CT. 100.102 Section 100.102 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND... Raft Race, Middletown, CT. (a) Regulated Area. That section of the Connecticut River between Dart...

On the nature of the sea ice albedo feedback in simple models.

Science.gov (United States)

Moon, W; Wettlaufer, J S

2014-08-01

We examine the nature of the ice-albedo feedback in a long-standing approach used in the dynamic-thermodynamic modeling of sea ice. The central issue examined is how the evolution of the ice area is treated when modeling a partial ice cover using a two-category-thickness scheme; thin sea ice and open water in one category and "thick" sea ice in the second. The problem with the scheme is that the area evolution is handled in a manner that violates the basic rules of calculus, which leads to a neglected area evolution term that is equivalent to neglecting a leading-order latent heat flux. We demonstrate the consequences by constructing energy balance models with a fractional ice cover and studying them under the influence of increased radiative forcing. It is shown that the neglected flux is particularly important in a decaying ice cover approaching the transitions to seasonal or ice-free conditions. Clearly, a mishandling of the evolution of the ice area has leading-order effects on the ice-albedo feedback. Accordingly, it may be of considerable importance to reexamine the relevant climate model schemes and to begin the process of converting them to fully resolve the sea ice thickness distribution in a manner such as remapping, which does not in principle suffer from the pathology we describe.

Modeling the summertime evolution of sea-ice melt ponds

DEFF Research Database (Denmark)

Lüthje, Mikael; Feltham, D.L.; Taylor, P.D.

2006-01-01

We present a mathematical model describing the summer melting of sea ice. We simulate the evolution of melt ponds and determine area coverage and total surface ablation. The model predictions are tested for sensitivity to the melt rate of unponded ice, enhanced melt rate beneath the melt ponds...

Cholesterol, sphingolipids, and glycolipids: What do we know about their role in raft-like membranes?

DEFF Research Database (Denmark)

Rog, T.; Vattulainen, I.

2014-01-01

Lipids rafts are considered to be functional nanoscale membrane domains enriched in cholesterol and sphingolipids, characteristic in particular of the external leaflet of cell membranes. Lipids, together with membrane-associated proteins, are therefore considered to form nanoscale units with pote......Lipids rafts are considered to be functional nanoscale membrane domains enriched in cholesterol and sphingolipids, characteristic in particular of the external leaflet of cell membranes. Lipids, together with membrane-associated proteins, are therefore considered to form nanoscale units...... with potential specific functions. Although the understanding of the structure of rafts in living cells is quite limited, the possible functions of rafts are widely discussed in the literature, highlighting their importance in cellular functions. In this review, we discuss the understanding of rafts that has...... emerged based on recent atomistic and coarse-grained molecular dynamics simulation studies on the key lipid raft components, which include cholesterol, sphingolipids, glycolipids, and the proteins interacting with these classes of lipids. The simulation results are compared to experiments when possible...

The impact of the Ice Model on tau neutrino reconstruction in IceCube

Energy Technology Data Exchange (ETDEWEB)

Usner, Marcel; Kowalski, Marek [DESY Zeuthen (Germany); Collaboration: IceCube-Collaboration

2015-07-01

The IceCube Neutrino Observatory at the South Pole is a Cherenkov detector with an instrumented volume of about one cubic kilometer of the Antarctic ice. Tau neutrinos can be measured via the double bang signature that links two subsequent cascades from the neutrino interaction and the tau decay. Reconstruction of double bang events is currently limited to PeV energies and above where the decay length of the tau is greater than 50 m. At lower energies it is important to consider small effects that affect the propagation of Cherenkov photons in the ice. The most recent model of the glacial ice below South pole contains a tilt of the ice layers and an anisotropy of the scattering coefficient in the direction of the glacier flow. These effects cannot be incorporated trivially into the existing reconstruction methods and can have a significant impact on single and double cascade reconstruction. Updates on finding a solution to this problem are presented, and the effect on the reconstruction of tau neutrino events is discussed.

Polymer@gold Nanoparticles Prepared via RAFT Polymerization for Opto-Biodetection

Directory of Open Access Journals (Sweden)

Sónia O. Pereira

2018-02-01

Full Text Available Colloidal gold nanoparticles (Au NPs have been used in several biological applications, which include the exploitation of size- and shape-dependent Localized Surface Plasmon Resonance (LSPR in biosensing devices. In order to obtain functional and stable Au NPs in a physiological medium, surface modification and functionalization are crucial steps in these endeavors. Reversible addition-fragmentation chain transfer (RAFT polymerization meets this need offering the possibility of control over the composition and architecture of polymeric shells coating Au NPs. Furthermore, playing with a careful choice of monomers, RAFT polymerization allows the possibility to design a polymer shell with the desired functional groups aiming at Au based nanocomposites suitable for biorecognition and biotargeting. This review provides important aspects concerning the synthesis and optical properties of Au NPs as well as concepts of RAFT polymerization. Understanding these concepts is crucial to appreciate the chemical strategies available towards RAFT-polymer coated Au core-shell nanostructures, which are here reviewed. Finally, examples of applications in opto-biodetection devices are provided and the potential of responsive “smart” nanomaterials based on such structures can be applied to other biological applications.

Research Note 2: Egg raft density and feeding preference of Culex ...

African Journals Online (AJOL)

... useful for estimating the number of eggs in a culicine egg raft, making a decision on larvae food preference and using the easily available table sugar instead of the more expensive sucrose in adult rearing. Keywords:mosquito eggs, mosquito larvae, culicine mosquito, egg raft density. Nigerian Journal of Parasitology Vol.

Chiral twist drives raft formation and organization in membranes composed of rod-like particles

Science.gov (United States)

Lubensky, Tom C.

2017-01-01

Lipid rafts are hypothesized to facilitate protein interaction, tension regulation, and trafficking in biological membranes, but the mechanisms responsible for their formation and maintenance are not clear. Insights into many other condensed matter phenomena have come from colloidal systems, whose micron-scale particles mimic basic properties of atoms and molecules but permit dynamic visualization with single-particle resolution. Recently, experiments showed that bidisperse mixtures of filamentous viruses can self-assemble into colloidal monolayers with thermodynamically stable rafts exhibiting chiral structure and repulsive interactions. We quantitatively explain these observations by modeling the membrane particles as chiral liquid crystals. Chiral twist promotes the formation of finite-sized rafts and mediates a repulsion that distributes them evenly throughout the membrane. Although this system is composed of filamentous viruses whose aggregation is entropically driven by dextran depletants instead of phospholipids and cholesterol with prominent electrostatic interactions, colloidal and biological membranes share many of the same physical symmetries. Chiral twist can contribute to the behavior of both systems and may account for certain stereospecific effects observed in molecular membranes. PMID:27999184

A network model for electrical transport in sea ice

International Nuclear Information System (INIS)

Zhu, J.; Golden, K.M.; Gully, A.; Sampson, C.

2010-01-01

Monitoring the thickness of sea ice is an important tool in assessing the impact of global warming on Earth's polar regions, and most methods of measuring ice thickness depend on detailed knowledge of its electrical properties. We develop a network model for the electrical conductivity of sea ice, which incorporates statistical measurements of the brine microstructure. The numerical simulations are in close agreement with direct measurements we made in Antarctica on the vertical conductivity of first year sea ice.

The pumice raft-forming 2012 Havre submarine eruption was effusive

Science.gov (United States)

Manga, Michael; Fauria, Kristen E.; Lin, Christina; Mitchell, Samuel J.; Jones, Meghan; Conway, Chris E.; Degruyter, Wim; Hosseini, Behnaz; Carey, Rebecca; Cahalan, Ryan; Houghton, Bruce F.; White, James D. L.; Jutzeler, Martin; Soule, S. Adam; Tani, Kenichiro

2018-05-01

A long-standing conceptual model for deep submarine eruptions is that high hydrostatic pressure hinders degassing and acceleration, and suppresses magma fragmentation. The 2012 submarine rhyolite eruption of Havre volcano in the Kermadec arc provided constraints on critical parameters to quantitatively test these concepts. This eruption produced a >1 km3 raft of floating pumice and a 0.1 km3 field of giant (>1 m) pumice clasts distributed down-current from the vent. We address the mechanism of creating these clasts using a model for magma ascent in a conduit. We use water ingestion experiments to address why some clasts float and others sink. We show that at the eruption depth of 900 m, the melt retained enough dissolved water, and hence had a low enough viscosity, that strain-rates were too low to cause brittle fragmentation in the conduit, despite mass discharge rates similar to Plinian eruptions on land. There was still, however, enough exsolved vapor at the vent depth to make the magma buoyant relative to seawater. Buoyant magma was thus extruded into the ocean where it rose, quenched, and fragmented to produce clasts up to several meters in diameter. We show that these large clasts would have floated to the sea surface within minutes, where air could enter pore space, and the fate of clasts is then controlled by the ability to trap gas within their pore space. We show that clasts from the raft retain enough gas to remain afloat whereas fragments from giant pumice collected from the seafloor ingest more water and sink. The pumice raft and the giant pumice seafloor deposit were thus produced during a clast-generating effusive submarine eruption, where fragmentation occurred above the vent, and the subsequent fate of clasts was controlled by their ability to ingest water.

Modeling Antarctic Ice Sheet retreat in warm climates: a historical perspective.

Science.gov (United States)

Pollard, D.; Deconto, R. M.; Gasson, E.

2016-12-01

Early modeling of Antarctic Ice Sheet size vs. climate focused on asymmetry between retreat and growth, with much greater warming needed to cause retreat from full ice cover, due to Height Mass Balance Feedback and albedo feedback. This led to a long-standing model-data conflict, with models needing 1000 to2000 ppmv atmospheric CO2 to produce retreat from full size, vs. proxy data of large ice fluctuations despite much lower CO2 since the Miocene.Subsequent modeling with marine ice physics found that the West Antarctic Ice Sheet could undergo repeated warm-period collapses with realistic past forcing. However, that yields only 3 to 7 m equivalent sea-level rise above modern, compared to 10 to 20 m or more suggested by some geologic data. Large subglacial basins in East Antarctica could be vulnerable to the same processes,but did not retreat in most models due to narrower and shallower sills.After recent modifications, some ice sheet models were able to produce warm-period collapse of major East Antarctic basins, with sea-level rise of up to 15 m. The modifications are (i) hydrofracturing by surface melt, and structural failure of ice cliffs, or (ii) numerical treatment at the grounding line. In these models, large retreat occurs both for past warmintervals, and also for future business-as-usual scenarios.Some interpretations of data in the late Oligocene and Miocene suggest yet larger fluctuations, between 50 to 100% of modern Antarctic size. That would require surface-melt driven retreat of some terrestrial East Antarctic ice, despite the hysteresis issue raised above. A recent study using a coupled climate-ice sheet model found that with a finer climate gridand more frequent coupling exchange, substantial retreat of terrestrial Antarctica can occur with 500 to 840 ppmv CO2, much lower than in earlier models. This will allow meaningful interactions between modeling and deeper-time geologic interpretations since the late Oligocene.

A Backscattering and Propagation Model for Radar Sounding of Ice Sheets

DEFF Research Database (Denmark)

Dall, Jørgen

2016-01-01

. The scattering and propagation properties of the icesheets are characterized using an empirical approach. The model comprises surface scattering from the air/ice interfaceand the ice/bed interface as well as volume scattering from the firn and the ice. Also specular reflection from the internal layers is modeled...

Myo1c regulates lipid raft recycling to control cell spreading, migration and Salmonella invasion.

Science.gov (United States)

Brandstaetter, Hemma; Kendrick-Jones, John; Buss, Folma

2012-04-15

A balance between endocytosis and membrane recycling regulates the composition and dynamics of the plasma membrane. Internalization and recycling of cholesterol- and sphingolipid-enriched lipid rafts is an actin-dependent process that is mediated by a specialized Arf6-dependent recycling pathway. Here, we identify myosin1c (Myo1c) as the first motor protein that drives the formation of recycling tubules emanating from the perinuclear recycling compartment. We demonstrate that the single-headed Myo1c is a lipid-raft-associated motor protein that is specifically involved in recycling of lipid-raft-associated glycosylphosphatidylinositol (GPI)-linked cargo proteins and their delivery to the cell surface. Whereas Myo1c overexpression increases the levels of these raft proteins at the cell surface, in cells depleted of Myo1c function through RNA interference or overexpression of a dominant-negative mutant, these tubular transport carriers of the recycling pathway are lost and GPI-linked raft markers are trapped in the perinuclear recycling compartment. Intriguingly, Myo1c only selectively promotes delivery of lipid raft membranes back to the cell surface and is not required for recycling of cargo, such as the transferrin receptor, which is mediated by parallel pathways. The profound defect in lipid raft trafficking in Myo1c-knockdown cells has a dramatic impact on cell spreading, cell migration and cholesterol-dependent Salmonella invasion; processes that require lipid raft transport to the cell surface to deliver signaling components and the extra membrane essential for cell surface expansion and remodeling. Thus, Myo1c plays a crucial role in the recycling of lipid raft membrane and proteins that regulate plasma membrane plasticity, cell motility and pathogen entry.

Sensitivity analysis for the coupling of a subglacial hydrology model with a 3D ice-sheet model.

Science.gov (United States)

Bertagna, L.; Perego, M.; Gunzburger, M.; Hoffman, M. J.; Price, S. F.

2017-12-01

When studying the movement of ice sheets, one of the most important factors that influence the velocity of the ice is the amount of friction against the bedrock. Usually, this is modeled by a friction coefficient that may depend on the bed geometry and other quantities, such as the temperature and/or water pressure at the ice-bedrock interface. These quantities are often assumed to be known (either by indirect measurements or by means of parameter estimation) and constant in time. Here, we present a 3D computational model for the simulation of the ice dynamics which incorporates a 2D model proposed by Hewitt (2011) for the subglacial water pressure. The hydrology model is fully coupled with the Blatter-Pattyn model for the ice sheet flow, as the subglacial water pressure appears in the expression for the ice friction coefficient, and the ice velocity appears as a source term in the hydrology model. We will present results on real geometries, and perform a sensitivity analysis with respect to the hydrology model parameters.

The Potsdam Parallel Ice Sheet Model (PISM-PIK – Part 2: Dynamic equilibrium simulation of the Antarctic ice sheet

Directory of Open Access Journals (Sweden)

M. A. Martin

2011-09-01

Full Text Available We present a dynamic equilibrium simulation of the ice sheet-shelf system on Antarctica with the Potsdam Parallel Ice Sheet Model (PISM-PIK. The simulation is initialized with present-day conditions for bed topography and ice thickness and then run to steady state with constant present-day surface mass balance. Surface temperature and sub-shelf basal melt distribution are parameterized. Grounding lines and calving fronts are free to evolve, and their modeled equilibrium state is compared to observational data. A physically-motivated calving law based on horizontal spreading rates allows for realistic calving fronts for various types of shelves. Steady-state dynamics including surface velocity and ice flux are analyzed for whole Antarctica and the Ronne-Filchner and Ross ice shelf areas in particular. The results show that the different flow regimes in sheet and shelves, and the transition zone between them, are captured reasonably well, supporting the approach of superposition of SIA and SSA for the representation of fast motion of grounded ice. This approach also leads to a natural emergence of sliding-dominated flow in stream-like features in this new 3-D marine ice sheet model.

Modelling large-scale ice-sheet–climate interactions following glacial inception

Directory of Open Access Journals (Sweden)

J. M. Gregory

2012-10-01

Full Text Available We have coupled the FAMOUS global AOGCM (atmosphere-ocean general circulation model to the Glimmer thermomechanical ice-sheet model in order to study the development of ice-sheets in north-east America (Laurentia and north-west Europe (Fennoscandia following glacial inception. This first use of a coupled AOGCM–ice-sheet model for a study of change on long palæoclimate timescales is made possible by the low computational cost of FAMOUS, despite its inclusion of physical parameterisations similar in complexity to higher-resolution AOGCMs. With the orbital forcing of 115 ka BP, FAMOUS–Glimmer produces ice caps on the Canadian Arctic islands, on the north-west coast of Hudson Bay and in southern Scandinavia, which grow to occupy the Keewatin region of the Canadian mainland and all of Fennoscandia over 50 ka. Their growth is eventually halted by increasing coastal ice discharge. The expansion of the ice-sheets influences the regional climate, which becomes cooler, reducing the ablation, and ice accumulates in places that initially do not have positive surface mass balance. The results suggest the possibility that the glaciation of north-east America could have begun on the Canadian Arctic islands, producing a regional climate change that caused or enhanced the growth of ice on the mainland. The increase in albedo (due to snow and ice cover is the dominant feedback on the area of the ice-sheets and acts rapidly, whereas the feedback of topography on SMB does not become significant for several centuries, but eventually has a large effect on the thickening of the ice-sheets. These two positive feedbacks are mutually reinforcing. In addition, the change in topography perturbs the tropospheric circulation, producing some reduction of cloud, and mitigating the local cooling along the margin of the Laurentide ice-sheet. Our experiments demonstrate the importance and complexity of the interactions between ice-sheets and local climate.

Explicit prediction of ice clouds in general circulation models

Science.gov (United States)

Kohler, Martin

1999-11-01

Although clouds play extremely important roles in the radiation budget and hydrological cycle of the Earth, there are large quantitative uncertainties in our understanding of their generation, maintenance and decay mechanisms, representing major obstacles in the development of reliable prognostic cloud water schemes for General Circulation Models (GCMs). Recognizing their relative neglect in the past, both observationally and theoretically, this work places special focus on ice clouds. A recent version of the UCLA - University of Utah Cloud Resolving Model (CRM) that includes interactive radiation is used to perform idealized experiments to study ice cloud maintenance and decay mechanisms under various conditions in term of: (1) background static stability, (2) background relative humidity, (3) rate of cloud ice addition over a fixed initial time-period and (4) radiation: daytime, nighttime and no-radiation. Radiation is found to have major effects on the life-time of layer-clouds. Optically thick ice clouds decay significantly slower than expected from pure microphysical crystal fall-out (taucld = 0.9--1.4 h as opposed to no-motion taumicro = 0.5--0.7 h). This is explained by the upward turbulent fluxes of water induced by IR destabilization, which partially balance the downward transport of water by snowfall. Solar radiation further slows the ice-water decay by destruction of the inversion above cloud-top and the resulting upward transport of water. Optically thin ice clouds, on the other hand, may exhibit even longer life-times (>1 day) in the presence of radiational cooling. The resulting saturation mixing ratio reduction provides for a constant cloud ice source. These CRM results are used to develop a prognostic cloud water scheme for the UCLA-GCM. The framework is based on the bulk water phase model of Ose (1993). The model predicts cloud liquid water and cloud ice separately, and which is extended to split the ice phase into suspended cloud ice (predicted

Application of a movable active vibration control system on a floating raft

Science.gov (United States)

Wang, Zhen; Mak, Cheuk Ming

2018-02-01

This paper presents a theoretical study of an inertial actuator connected to an accelerometer by a local feedback loop for active vibration control on a floating raft. On the criterion of the minimum power transmission from the vibratory machines to the flexible foundation in the floating raft, the best mounting positions for the inertial actuator on the intermediate mass of the floating raft are investigated. Simulation results indicate that the best mounting positions for the inertial actuator vary with frequency. To control time-varying excitations of vibratory machines on a floating raft effectively, an automatic control system based on real-time measurement of a cost function and automatically searching the best mounting position of the inertial actuator is proposed. To the best of our knowledge, it is the first time that an automatic control system is proposed to move an actuator automatically for controlling a time-varying excitation.

A New Discrete Element Sea-Ice Model for Earth System Modeling

Energy Technology Data Exchange (ETDEWEB)

Turner, Adrian Keith [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

2017-03-10

Sea ice forms a frozen crust of sea water oating in high-latitude oceans. It is a critical component of the Earth system because its formation helps to drive the global thermohaline circulation, and its seasonal waxing and waning in the high north and Southern Ocean signi cantly affects planetary albedo. Usually 4{6% of Earth's marine surface is covered by sea ice at any one time, which limits the exchange of heat, momentum, and mass between the atmosphere and ocean in the polar realms. Snow accumulates on sea ice and inhibits its vertical growth, increases its albedo, and contributes to pooled water in melt ponds that darken the Arctic ice surface in the spring. Ice extent and volume are subject to strong seasonal, inter-annual and hemispheric variations, and climatic trends, which Earth System Models (ESMs) are challenged to simulate accurately (Stroeve et al., 2012; Stocker et al., 2013). This is because there are strong coupled feedbacks across the atmosphere-ice-ocean boundary layers, including the ice-albedo feedback, whereby a reduced ice cover leads to increased upper ocean heating, further enhancing sea-ice melt and reducing incident solar radiation re ected back into the atmosphere (Perovich et al., 2008). A reduction in perennial Arctic sea-ice during the satellite era has been implicated in mid-latitude weather changes, including over North America (Overland et al., 2015). Meanwhile, most ESMs have been unable to simulate observed inter-annual variability and trends in Antarctic sea-ice extent during the same period (Gagne et al., 2014).

On the nature of the sea ice albedo feedback in simple models

OpenAIRE

Moon, Woosok; Wettlaufer, John S.

2013-01-01

We examine the nature of the ice-albedo feedback in a long standing approach used in the dynamic-thermodynamic modeling of sea ice. The central issue examined is how the evolution of the ice area is treated when modeling a partial ice cover using a two-category-thickness scheme; thin sea ice and open water in one category and "thick" sea ice in the second. The problem with the scheme is that the area-evolution is handled in a manner that violates the basic rules of calculus, which leads to a ...

Economic impacts of guided whitewater rafting: a study of five rivers

Science.gov (United States)

Donald B.K. English; J. Michael Bowker

1996-01-01

This paper presents estimates of the statewide economic impacts of guided whitewater rafting on five rivers in six states: the Nantahala (North Carolina), Gauley (West Virginia), Kennebec (Maine), Middle Fork of the Salmon (Idaho), and Chattooga (Georgia-South Carolina). Except for the Chattooga and Middle Fork, rafting is dependent on upstream dam releases. Guide fees...

Direct access to dithiobenzoate RAFT agent fragmentation rate coefficients by ESR spin-trapping.

Science.gov (United States)

Ranieri, Kayte; Delaittre, Guillaume; Barner-Kowollik, Christopher; Junkers, Thomas

2014-12-01

The β-scission rate coefficient of tert-butyl radicals fragmenting off the intermediate resulting from their addition to tert-butyl dithiobenzoate-a reversible addition-fragmentation chain transfer (RAFT) agent-is estimated via the recently introduced electron spin resonance (ESR)-trapping methodology as a function of temperature. The newly introduced ESR-trapping methodology is critically evaluated and found to be reliable. At 20 °C, a fragmentation rate coefficient of close to 0.042 s(-1) is observed, whereas the activation parameters for the fragmentation reaction-determined for the first time-read EA = 82 ± 13.3 kJ mol(-1) and A = (1.4 ± 0.25) × 10(13) s(-1) . The ESR spin-trapping methodology thus efficiently probes the stability of the RAFT adduct radical under conditions relevant for the pre-equilibrium of the RAFT process. It particularly indicates that stable RAFT adduct radicals are indeed formed in early stages of the RAFT poly-merization, at least when dithiobenzoates are employed as controlling agents as stipulated by the so-called slow fragmentation theory. By design of the methodology, the obtained fragmentation rate coefficients represent an upper limit. The ESR spin-trapping methodology is thus seen as a suitable tool for evaluating the fragmentation rate coefficients of a wide range of RAFT adduct radicals. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

78 FR 17087 - Special Local Regulation; New River Raft Race, New River; Fort Lauderdale, FL

Science.gov (United States)

2013-03-20

...-AA08 Special Local Regulation; New River Raft Race, New River; Fort Lauderdale, FL AGENCY: Coast Guard... on the New River in Fort Lauderdale, Florida during the Rotary Club of Fort Lauderdale New River Raft... States during the Rotary Club of Fort Lauderdale New River Raft Race. On March 23, 2013, Fort Lauderdale...

Surface Energy and Mass Balance Model for Greenland Ice Sheet and Future Projections

Science.gov (United States)

Liu, Xiaojian

The Greenland Ice Sheet contains nearly 3 million cubic kilometers of glacial ice. If the entire ice sheet completely melted, sea level would raise by nearly 7 meters. There is thus considerable interest in monitoring the mass balance of the Greenland Ice Sheet. Each year, the ice sheet gains ice from snowfall and loses ice through iceberg calving and surface melting. In this thesis, we develop, validate and apply a physics based numerical model to estimate current and future surface mass balance of the Greenland Ice Sheet. The numerical model consists of a coupled surface energy balance and englacial model that is simple enough that it can be used for long time scale model runs, but unlike previous empirical parameterizations, has a physical basis. The surface energy balance model predicts ice sheet surface temperature and melt production. The englacial model predicts the evolution of temperature and meltwater within the ice sheet. These two models can be combined with estimates of precipitation (snowfall) to estimate the mass balance over the Greenland Ice Sheet. We first compare model performance with in-situ observations to demonstrate that the model works well. We next evaluate how predictions are degraded when we statistically downscale global climate data. We find that a simple, nearest neighbor interpolation scheme with a lapse rate correction is able to adequately reproduce melt patterns on the Greenland Ice Sheet. These results are comparable to those obtained using empirical Positive Degree Day (PDD) methods. Having validated the model, we next drove the ice sheet model using the suite of atmospheric model runs available through the CMIP5 atmospheric model inter-comparison, which in turn built upon the RCP 8.5 (business as usual) scenarios. From this exercise we predict how much surface melt production will increase in the coming century. This results in 4-10 cm sea level equivalent, depending on the CMIP5 models. Finally, we try to bound melt water

An empirical firn-densification model comprising ice-lences

DEFF Research Database (Denmark)

Reeh, Niels; Fisher, D.A.; Koerner, R.M.

2005-01-01

a suitable value of the surface snow density. In the present study, a simple densification model is developed that specifically accounts for the content of ice lenses in the snowpack. An annual layer is considered to be composed of an ice fraction and a firn fraction. It is assumed that all meltwater formed...... changes reflect a volume change of the ice sheet with no corresponding change of mass, i.e. a volume change that does not influence global sea level....

From cyclic ice streaming to Heinrich-like events: the grow-and-surge instability in the Parallel Ice Sheet Model

Directory of Open Access Journals (Sweden)

J. Feldmann

2017-08-01

Full Text Available >Here we report on a cyclic, physical ice-discharge instability in the Parallel Ice Sheet Model, simulating the flow of a three-dimensional, inherently buttressed ice-sheet-shelf system which periodically surges on a millennial timescale. The thermomechanically coupled model on 1 km horizontal resolution includes an enthalpy-based formulation of the thermodynamics, a nonlinear stress-balance-based sliding law and a very simple subglacial hydrology. The simulated unforced surging is characterized by rapid ice streaming through a bed trough, resulting in abrupt discharge of ice across the grounding line which is eventually calved into the ocean. We visualize the central feedbacks that dominate the subsequent phases of ice buildup, surge and stabilization which emerge from the interaction between ice dynamics, thermodynamics and the subglacial till layer. Results from the variation of surface mass balance and basal roughness suggest that ice sheets of medium thickness may be more susceptible to surging than relatively thin or thick ones for which the surge feedback loop is damped. We also investigate the influence of different basal sliding laws (ranging from purely plastic to nonlinear to linear on possible surging. The presented mechanisms underlying our simulations of self-maintained, periodic ice growth and destabilization may play a role in large-scale ice-sheet surging, such as the surging of the Laurentide Ice Sheet, which is associated with Heinrich events, and ice-stream shutdown and reactivation, such as observed in the Siple Coast region of West Antarctica.

Lipid raft disarrangement as a result of neuropathological progresses: a novel strategy for early diagnosis?

Science.gov (United States)

Marin, R; Rojo, J A; Fabelo, N; Fernandez, C E; Diaz, M

2013-08-15

Lipid rafts are the preferential site of numerous membrane signaling proteins which are involved in neuronal functioning and survival. These proteins are organized in multiprotein complexes, or signalosomes, in close contact with lipid classes particularly represented in lipid rafts (i.e. cholesterol, sphingolipids and saturated fatty acids), which may contribute to physiological responses leading to neuroprotection. Increasing evidence indicates that alteration of lipid composition in raft structures as a consequence of neuropathologies, such as Alzheimer's disease (AD) and Parkinson's disease (PD), causes a dramatic increase in lipid raft order. These phenomena may correlate with perturbation of signalosome activities, likely contributing to neurodegenerative progression. Interestingly, significant disruption of stable raft microenvironments has been already observed in the first stages of either AD or PD, suggesting that these alterations may represent early events in the neuropathological development. In this regard, the search for biochemical markers, such as specific metabolic products altered in the brain at the first steps of the disease, presently represents an important challenge for early diagnostic strategies. Alterations of these biomarkers may be reflected in either plasma or cerebrospinal fluid, thus representing a potential strategy to predict an accurate diagnosis. We propose that pathologically-linked lipid raft markers may be interesting candidates to be explored at this level, although it has not been studied so far to what extent alteration of different signalosome components may be reflected in peripheral fluids. In this mini-review, we will discuss on relevant aspects of lipid rafts that contribute to the modulation of neuropathological events related to AD and PD. An interesting hypothesis is that anomalies on raft biomarkers measured at peripheral fluids might mirror the lipid raft pathology observed in early stages of AD and PD. Copyright

River predisposition to ice jams: a simplified geospatial model

Directory of Open Access Journals (Sweden)

S. De Munck

2017-07-01

Full Text Available Floods resulting from river ice jams pose a great risk to many riverside municipalities in Canada. The location of an ice jam is mainly influenced by channel morphology. The goal of this work was therefore to develop a simplified geospatial model to estimate the predisposition of a river channel to ice jams. Rather than predicting the timing of river ice breakup, the main question here was to predict where the broken ice is susceptible to jam based on the river's geomorphological characteristics. Thus, six parameters referred to potential causes for ice jams in the literature were initially selected: presence of an island, narrowing of the channel, high sinuosity, presence of a bridge, confluence of rivers, and slope break. A GIS-based tool was used to generate the aforementioned factors over regular-spaced segments along the entire channel using available geospatial data. An ice jam predisposition index (IJPI was calculated by combining the weighted optimal factors. Three Canadian rivers (province of Québec were chosen as test sites. The resulting maps were assessed from historical observations and local knowledge. Results show that 77 % of the observed ice jam sites on record occurred in river sections that the model considered as having high or medium predisposition. This leaves 23 % of false negative errors (missed occurrence. Between 7 and 11 % of the highly predisposed river sections did not have an ice jam on record (false-positive cases. Results, limitations, and potential improvements are discussed.

Landfast ice thickness in the Canadian Arctic Archipelago from observations and models

Science.gov (United States)

Howell, Stephen E. L.; Laliberté, Frédéric; Kwok, Ron; Derksen, Chris; King, Joshua

2016-07-01

Observed and modelled landfast ice thickness variability and trends spanning more than 5 decades within the Canadian Arctic Archipelago (CAA) are summarized. The observed sites (Cambridge Bay, Resolute, Eureka and Alert) represent some of the Arctic's longest records of landfast ice thickness. Observed end-of-winter (maximum) trends of landfast ice thickness (1957-2014) were statistically significant at Cambridge Bay (-4.31 ± 1.4 cm decade-1), Eureka (-4.65 ± 1.7 cm decade-1) and Alert (-4.44 ± 1.6 cm -1) but not at Resolute. Over the 50+-year record, the ice thinned by ˜ 0.24-0.26 m at Cambridge Bay, Eureka and Alert with essentially negligible change at Resolute. Although statistically significant warming in spring and fall was present at all sites, only low correlations between temperature and maximum ice thickness were present; snow depth was found to be more strongly associated with the negative ice thickness trends. Comparison with multi-model simulations from Coupled Model Intercomparison project phase 5 (CMIP5), Ocean Reanalysis Intercomparison (ORA-IP) and Pan-Arctic Ice-Ocean Modeling and Assimilation System (PIOMAS) show that although a subset of current generation models have a "reasonable" climatological representation of landfast ice thickness and distribution within the CAA, trends are unrealistic and far exceed observations by up to 2 orders of magnitude. ORA-IP models were found to have positive correlations between temperature and ice thickness over the CAA, a feature that is inconsistent with both observations and coupled models from CMIP5.

Sea ice - Multiyear cycles and white ice

Science.gov (United States)

Ledley, T. S.

1985-01-01

The multiyear thickness cycles represent one of the interesting features of the sea ice studies performed by Semtner (1976) and Washington et al. (1976) with simple thermodynamic models of sea ice. In the present article, a description is given of results which show that the insulating effect of snow on the surface of the sea ice is important in producing these multiyear cycles given the physics included in the model. However, when the formation of white ice is included, the cycles almost disappear. White ice is the ice which forms at the snow-ice interface when the snow layer becomes thick enough to depress the ice below the water level. Water infiltrates the snow by coming through the ice at leads and generally freezes there, forming white ice.

Results of the Marine Ice Sheet Model Intercomparison Project, MISMIP

Directory of Open Access Journals (Sweden)

F. Pattyn

2012-05-01

Full Text Available Predictions of marine ice-sheet behaviour require models that are able to robustly simulate grounding line migration. We present results of an intercomparison exercise for marine ice-sheet models. Verification is effected by comparison with approximate analytical solutions for flux across the grounding line using simplified geometrical configurations (no lateral variations, no effects of lateral buttressing. Unique steady state grounding line positions exist for ice sheets on a downward sloping bed, while hysteresis occurs across an overdeepened bed, and stable steady state grounding line positions only occur on the downward-sloping sections. Models based on the shallow ice approximation, which does not resolve extensional stresses, do not reproduce the approximate analytical results unless appropriate parameterizations for ice flux are imposed at the grounding line. For extensional-stress resolving "shelfy stream" models, differences between model results were mainly due to the choice of spatial discretization. Moving grid methods were found to be the most accurate at capturing grounding line evolution, since they track the grounding line explicitly. Adaptive mesh refinement can further improve accuracy, including fixed grid models that generally perform poorly at coarse resolution. Fixed grid models, with nested grid representations of the grounding line, are able to generate accurate steady state positions, but can be inaccurate over transients. Only one full-Stokes model was included in the intercomparison, and consequently the accuracy of shelfy stream models as approximations of full-Stokes models remains to be determined in detail, especially during transients.

Sea ice thermohaline dynamics and biogeochemistry in the Arctic Ocean: Empirical and model results

Science.gov (United States)

Duarte, Pedro; Meyer, Amelie; Olsen, Lasse M.; Kauko, Hanna M.; Assmy, Philipp; Rösel, Anja; Itkin, Polona; Hudson, Stephen R.; Granskog, Mats A.; Gerland, Sebastian; Sundfjord, Arild; Steen, Harald; Hop, Haakon; Cohen, Lana; Peterson, Algot K.; Jeffery, Nicole; Elliott, Scott M.; Hunke, Elizabeth C.; Turner, Adrian K.

2017-07-01

Large changes in the sea ice regime of the Arctic Ocean have occurred over the last decades justifying the development of models to forecast sea ice physics and biogeochemistry. The main goal of this study is to evaluate the performance of the Los Alamos Sea Ice Model (CICE) to simulate physical and biogeochemical properties at time scales of a few weeks and to use the model to analyze ice algal bloom dynamics in different types of ice. Ocean and atmospheric forcing data and observations of the evolution of the sea ice properties collected from 18 April to 4 June 2015, during the Norwegian young sea ICE expedition, were used to test the CICE model. Our results show the following: (i) model performance is reasonable for sea ice thickness and bulk salinity; good for vertically resolved temperature, vertically averaged Chl a concentrations, and standing stocks; and poor for vertically resolved Chl a concentrations. (ii) Improving current knowledge about nutrient exchanges, ice algal recruitment, and motion is critical to improve sea ice biogeochemical modeling. (iii) Ice algae may bloom despite some degree of basal melting. (iv) Ice algal motility driven by gradients in limiting factors is a plausible mechanism to explain their vertical distribution. (v) Different ice algal bloom and net primary production (NPP) patterns were identified in the ice types studied, suggesting that ice algal maximal growth rates will increase, while sea ice vertically integrated NPP and biomass will decrease as a result of the predictable increase in the area covered by refrozen leads in the Arctic Ocean.

AFM of the ultrastructural and mechanical properties of lipid-raft-disrupted and/or cold-treated endothelial cells.

Science.gov (United States)

Wu, Li; Huang, Jie; Yu, Xiaoxue; Zhou, Xiaoqing; Gan, Chaoye; Li, Ming; Chen, Yong

2014-02-01

The nonionic detergent extraction at 4 °C and the cholesterol-depletion-induced lipid raft disruption are the two widely used experimental strategies for lipid raft research. However, the effects of raft disruption and/or cold treatment on the ultrastructural and mechanical properties of cells are still unclear. Here, we evaluated the effects of raft disruption and/or cold (4 °C) treatment on these properties of living human umbilical vein endothelial cells (HUVECs). At first, the cholesterol-depletion-induced raft disruption was visualized by confocal microscopy and atomic force microscopy (AFM) in combination with fluorescent quantum dots. Next, the cold-induced cell contraction and the formation of end-branched filopodia were observed by confocal microscopy and AFM. Then, the cell-surface ultrastructures were imaged by AFM, and the data showed that raft disruption and cold treatment induced opposite effects on cell-surface roughness (a significant decrease and a significant increase, respectively). Moreover, the cell-surface mechanical properties (stiffness and adhesion force) of raft-disrupted- and/or cold-treated HUVECs were measured by the force measurement function of AFM. We found that raft disruption and cold treatment induced parallel effects on cell stiffness (increase) or adhesion force (decrease) and that the combination of the two treatments caused dramatically strengthened effects. Finally, raft disruption was found to significantly impair cell migration as previously reported, whereas temporary cold treatment only caused a slight but nonsignificant decrease in cell migration performed at physiological temperature. Although the mechanisms for causing these results might be complicated and more in-depth studies will be needed, our data may provide important information for better understanding the effects of raft disruption or cold treatment on cells and the two strategies for lipid raft research.

Groundwater flow modelling under ice sheet conditions. Scoping calculations

International Nuclear Information System (INIS)

Jaquet, O.; Namar, R.; Jansson, P.

2010-10-01

The potential impact of long-term climate changes has to be evaluated with respect to repository performance and safety. In particular, glacial periods of advancing and retreating ice sheet and prolonged permafrost conditions are likely to occur over the repository site. The growth and decay of ice sheets and the associated distribution of permafrost will affect the groundwater flow field and its composition. As large changes may take place, the understanding of groundwater flow patterns in connection to glaciations is an important issue for the geological disposal at long term. During a glacial period, the performance of the repository could be weakened by some of the following conditions and associated processes: - Maximum pressure at repository depth (canister failure). - Maximum permafrost depth (canister failure, buffer function). - Concentration of groundwater oxygen (canister corrosion). - Groundwater salinity (buffer stability). - Glacially induced earthquakes (canister failure). Therefore, the GAP project aims at understanding key hydrogeological issues as well as answering specific questions: - Regional groundwater flow system under ice sheet conditions. - Flow and infiltration conditions at the ice sheet bed. - Penetration depth of glacial meltwater into the bedrock. - Water chemical composition at repository depth in presence of glacial effects. - Role of the taliks, located in front of the ice sheet, likely to act as potential discharge zones of deep groundwater flow. - Influence of permafrost distribution on the groundwater flow system in relation to build-up and thawing periods. - Consequences of glacially induced earthquakes on the groundwater flow system. Some answers will be provided by the field data and investigations; the integration of the information and the dynamic characterisation of the key processes will be obtained using numerical modelling. Since most of the data are not yet available, some scoping calculations are performed using the

Groundwater flow modelling under ice sheet conditions. Scoping calculations

Energy Technology Data Exchange (ETDEWEB)

Jaquet, O.; Namar, R. (In2Earth Modelling Ltd (Switzerland)); Jansson, P. (Dept. of Physical Geography and Quaternary Geology, Stockholm Univ., Stockholm (Sweden))

2010-10-15

The potential impact of long-term climate changes has to be evaluated with respect to repository performance and safety. In particular, glacial periods of advancing and retreating ice sheet and prolonged permafrost conditions are likely to occur over the repository site. The growth and decay of ice sheets and the associated distribution of permafrost will affect the groundwater flow field and its composition. As large changes may take place, the understanding of groundwater flow patterns in connection to glaciations is an important issue for the geological disposal at long term. During a glacial period, the performance of the repository could be weakened by some of the following conditions and associated processes: - Maximum pressure at repository depth (canister failure). - Maximum permafrost depth (canister failure, buffer function). - Concentration of groundwater oxygen (canister corrosion). - Groundwater salinity (buffer stability). - Glacially induced earthquakes (canister failure). Therefore, the GAP project aims at understanding key hydrogeological issues as well as answering specific questions: - Regional groundwater flow system under ice sheet conditions. - Flow and infiltration conditions at the ice sheet bed. - Penetration depth of glacial meltwater into the bedrock. - Water chemical composition at repository depth in presence of glacial effects. - Role of the taliks, located in front of the ice sheet, likely to act as potential discharge zones of deep groundwater flow. - Influence of permafrost distribution on the groundwater flow system in relation to build-up and thawing periods. - Consequences of glacially induced earthquakes on the groundwater flow system. Some answers will be provided by the field data and investigations; the integration of the information and the dynamic characterisation of the key processes will be obtained using numerical modelling. Since most of the data are not yet available, some scoping calculations are performed using the

Inferring Ice Thickness from a Glacier Dynamics Model and Multiple Surface Datasets.

Science.gov (United States)

Guan, Y.; Haran, M.; Pollard, D.

2017-12-01

The future behavior of the West Antarctic Ice Sheet (WAIS) may have a major impact on future climate. For instance, ice sheet melt may contribute significantly to global sea level rise. Understanding the current state of WAIS is therefore of great interest. WAIS is drained by fast-flowing glaciers which are major contributors to ice loss. Hence, understanding the stability and dynamics of glaciers is critical for predicting the future of the ice sheet. Glacier dynamics are driven by the interplay between the topography, temperature and basal conditions beneath the ice. A glacier dynamics model describes the interactions between these processes. We develop a hierarchical Bayesian model that integrates multiple ice sheet surface data sets with a glacier dynamics model. Our approach allows us to (1) infer important parameters describing the glacier dynamics, (2) learn about ice sheet thickness, and (3) account for errors in the observations and the model. Because we have relatively dense and accurate ice thickness data from the Thwaites Glacier in West Antarctica, we use these data to validate the proposed approach. The long-term goal of this work is to have a general model that may be used to study multiple glaciers in the Antarctic.

Reducing Spread in Climate Model Projections of a September Ice-Free Arctic

Science.gov (United States)

Liu, Jiping; Song, Mirong; Horton, Radley M.; Hu, Yongyun

2013-01-01

This paper addresses the specter of a September ice-free Arctic in the 21st century using newly available simulations from the Coupled Model Intercomparison Project Phase 5 (CMIP5). We find that large spread in the projected timing of the September ice-free Arctic in 30 CMIP5 models is associated at least as much with different atmospheric model components as with initial conditions. Here we reduce the spread in the timing of an ice-free state using two different approaches for the 30 CMIP5 models: (i) model selection based on the ability to reproduce the observed sea ice climatology and variability since 1979 and (ii) constrained estimation based on the strong and persistent relationship between present and future sea ice conditions. Results from the two approaches show good agreement. Under a high-emission scenario both approaches project that September ice extent will drop to approx. 1.7 million sq km in the mid 2040s and reach the ice-free state (defined as 1 million sq km) in 2054-2058. Under a medium-mitigation scenario, both approaches project a decrease to approx.1.7 million sq km in the early 2060s, followed by a leveling off in the ice extent.

Lipid raft proteome reveals that oxidative phosphorylation system is associated with the plasma membrane.

Science.gov (United States)

Kim, Bong-Woo; Lee, Chang Seok; Yi, Jae-Sung; Lee, Joo-Hyung; Lee, Joong-Won; Choo, Hyo-Jung; Jung, Soon-Young; Kim, Min-Sik; Lee, Sang-Won; Lee, Myung-Shik; Yoon, Gyesoon; Ko, Young-Gyu

2010-12-01

Although accumulating proteomic analyses have supported the fact that mitochondrial oxidative phosphorylation (OXPHOS) complexes are localized in lipid rafts, which mediate cell signaling, immune response and host-pathogen interactions, there has been no in-depth study of the physiological functions of lipid-raft OXPHOS complexes. Here, we show that many subunits of OXPHOS complexes were identified from the lipid rafts of human adipocytes, C2C12 myotubes, Jurkat cells and surface biotin-labeled Jurkat cells via shotgun proteomic analysis. We discuss the findings of OXPHOS complexes in lipid rafts, the role of the surface ATP synthase complex as a receptor for various ligands and extracellular superoxide generation by plasma membrane oxidative phosphorylation complexes.

Hydroperoxide Traces in Common Cyclic Ethers as Initiators for Controlled RAFT Polymerizations.

Science.gov (United States)

Eggers, Steffen; Abetz, Volker

2018-04-01

Herein, a reversible addition-fragmentation chain transfer (RAFT) polymerization is introduced for reactive monomers like N-acryloylpyrrolidine or N,N-dimethylacrylamide working without a conventional radical initiator. As a very straightforward proof of principle, the method takes advantage of the usually inconvenient radical-generating hydroperoxide contaminations in cyclic ethers like tetrahydrofuran or 1,4-dioxane, which are very common solvents in polymer sciences. The polymerizations are surprisingly well controlled and the polymers can be extended with a second block, indicating their high livingness. "Solvent-initiated" RAFT polymerizations hence prove to be a feasible access to tailored materials with minimal experimental effort and standard laboratory equipment, only requiring the following ingredients: hydroperoxide-contaminated solvent, monomer, and RAFT agent. In other respects, however, the potential coinitiating ability of the used solvent is to be considered when investigating the kinetics of RAFT polymerizations or aiming for the synthesis of high-livingness polymers, e.g., multiblock copolymers. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Anisotropic mesh adaptation for marine ice-sheet modelling

Science.gov (United States)

Gillet-Chaulet, Fabien; Tavard, Laure; Merino, Nacho; Peyaud, Vincent; Brondex, Julien; Durand, Gael; Gagliardini, Olivier

2017-04-01

Improving forecasts of ice-sheets contribution to sea-level rise requires, amongst others, to correctly model the dynamics of the grounding line (GL), i.e. the line where the ice detaches from its underlying bed and goes afloat on the ocean. Many numerical studies, including the intercomparison exercises MISMIP and MISMIP3D, have shown that grid refinement in the GL vicinity is a key component to obtain reliable results. Improving model accuracy while maintaining the computational cost affordable has then been an important target for the development of marine icesheet models. Adaptive mesh refinement (AMR) is a method where the accuracy of the solution is controlled by spatially adapting the mesh size. It has become popular in models using the finite element method as they naturally deal with unstructured meshes, but block-structured AMR has also been successfully applied to model GL dynamics. The main difficulty with AMR is to find efficient and reliable estimators of the numerical error to control the mesh size. Here, we use the estimator proposed by Frey and Alauzet (2015). Based on the interpolation error, it has been found effective in practice to control the numerical error, and has some flexibility, such as its ability to combine metrics for different variables, that makes it attractive. Routines to compute the anisotropic metric defining the mesh size have been implemented in the finite element ice flow model Elmer/Ice (Gagliardini et al., 2013). The mesh adaptation is performed using the freely available library MMG (Dapogny et al., 2014) called from Elmer/Ice. Using a setup based on the inter-comparison exercise MISMIP+ (Asay-Davis et al., 2016), we study the accuracy of the solution when the mesh is adapted using various variables (ice thickness, velocity, basal drag, …). We show that combining these variables allows to reduce the number of mesh nodes by more than one order of magnitude, for the same numerical accuracy, when compared to uniform mesh

Lipid rafts and B cell signaling.

Science.gov (United States)

Gupta, Neetu; DeFranco, Anthony L

2007-10-01

B cells comprise an essential component of the humoral immune system. They are equipped with the unique ability to synthesize and secrete pathogen-neutralizing antibodies, and share with professional antigen presenting cells the ability to internalize foreign antigens, and process them for presentation to helper T cells. Recent evidence indicates that specialized cholesterol- and glycosphingolipid-rich microdomains in the plasma membrane commonly referred to as lipid rafts, serve to compartmentalize key signaling molecules during the different stages of B cell activation including B cell antigen receptor (BCR)-initiated signal transduction, endocytosis of BCR-antigen complexes, loading of antigenic peptides onto MHC class II molecules, MHC-II associated antigen presentation to helper T cells, and receipt of helper signals via the CD40 receptor. Here we review the recent literature arguing for a role of lipid rafts in the spatial organization of B cell function.

High temperature initiator-free RAFT polymerization of methyl methacrylate in a microwave reactor

NARCIS (Netherlands)

Paulus, R.M.; Becer, C.R.; Hoogenboom, R.; Schubert, U.S.

2009-01-01

The reversible additionfragmentation chain transfer (RAFT) polymerization of methyl methacrylate (MMA) was investigated under microwave irradiation. At first, a comparison was made between microwave and thermal heating for the RAFT polymerization of MMA with azobis(isobutyronitrile) (AIBN) as

Spatio-temporal Model of Endogenous ROS and Raft-Dependent WNT/Beta-Catenin Signaling Driving Cell Fate Commitment in Human Neural Progenitor Cells

Science.gov (United States)

Haack, Fiete; Lemcke, Heiko; Ewald, Roland; Rharass, Tareck; Uhrmacher, Adelinde M.

2015-01-01

Canonical WNT/β-catenin signaling is a central pathway in embryonic development, but it is also connected to a number of cancers and developmental disorders. Here we apply a combined in-vitro and in-silico approach to investigate the spatio-temporal regulation of WNT/β-catenin signaling during the early neural differentiation process of human neural progenitors cells (hNPCs), which form a new prospect for replacement therapies in the context of neurodegenerative diseases. Experimental measurements indicate a second signal mechanism, in addition to canonical WNT signaling, being involved in the regulation of nuclear β-catenin levels during the cell fate commitment phase of neural differentiation. We find that the biphasic activation of β-catenin signaling observed experimentally can only be explained through a model that combines Reactive Oxygen Species (ROS) and raft dependent WNT/β-catenin signaling. Accordingly after initiation of differentiation endogenous ROS activates DVL in a redox-dependent manner leading to a transient activation of down-stream β-catenin signaling, followed by continuous auto/paracrine WNT signaling, which crucially depends on lipid rafts. Our simulation studies further illustrate the elaborate spatio-temporal regulation of DVL, which, depending on its concentration and localization, may either act as direct inducer of the transient ROS/β-catenin signal or as amplifier during continuous auto-/parcrine WNT/β-catenin signaling. In addition we provide the first stochastic computational model of WNT/β-catenin signaling that combines membrane-related and intracellular processes, including lipid rafts/receptor dynamics as well as WNT- and ROS-dependent β-catenin activation. The model’s predictive ability is demonstrated under a wide range of varying conditions for in-vitro and in-silico reference data sets. Our in-silico approach is realized in a multi-level rule-based language, that facilitates the extension and modification of the

Climate Modeling and Causal Identification for Sea Ice Predictability

Energy Technology Data Exchange (ETDEWEB)

Hunke, Elizabeth Clare [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Urrego Blanco, Jorge Rolando [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Urban, Nathan Mark [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

2018-02-12

This project aims to better understand causes of ongoing changes in the Arctic climate system, particularly as decreasing sea ice trends have been observed in recent decades and are expected to continue in the future. As part of the Sea Ice Prediction Network, a multi-agency effort to improve sea ice prediction products on seasonal-to-interannual time scales, our team is studying sensitivity of sea ice to a collection of physical process and feedback mechanism in the coupled climate system. During 2017 we completed a set of climate model simulations using the fully coupled ACME-HiLAT model. The simulations consisted of experiments in which cloud, sea ice, and air-ocean turbulent exchange parameters previously identified as important for driving output uncertainty in climate models were perturbed to account for parameter uncertainty in simulated climate variables. We conducted a sensitivity study to these parameters, which built upon a previous study we made for standalone simulations (Urrego-Blanco et al., 2016, 2017). Using the results from the ensemble of coupled simulations, we are examining robust relationships between climate variables that emerge across the experiments. We are also using causal discovery techniques to identify interaction pathways among climate variables which can help identify physical mechanisms and provide guidance in predictability studies. This work further builds on and leverages the large ensemble of standalone sea ice simulations produced in our previous w14_seaice project.

Microvillar membrane microdomains exist at physiological temperature. Role of galectin-4 as lipid raft stabilizer revealed by "superrafts"

DEFF Research Database (Denmark)

Braccia, Anita; Villani, Maristella; Immerdal, Lissi

2003-01-01

rafts prepared by the two protocols were morphologically different but had essentially similar profiles of protein- and lipid components, showing that raft microdomains do exist at 37 degrees C and are not "low temperature artifacts." We also employed a novel method of sequential detergent extraction...... and the transmembrane aminopeptidase N, whereas the peripheral lipid raft protein annexin 2 was essentially absent. In conclusion, in the microvillar membrane, galectin-4, functions as a core raft stabilizer/organizer for other, more loosely raft-associated proteins. The superraft analysis might be applicable to other...

Proteomic analysis of BmN cell lipid rafts reveals roles in Bombyx mori nucleopolyhedrovirus infection.

Science.gov (United States)

Hu, Xiaolong; Zhu, Min; Liang, Zi; Kumar, Dhiraj; Chen, Fei; Zhu, Liyuan; Kuang, Sulan; Xue, Renyu; Cao, Guangli; Gong, Chengliang

2017-04-01

The mechanism of how Bombyx mori nucleopolyhedrovirus (BmNPV) enters cells is unknown. The primary components of membrane lipid rafts are proteins and cholesterol, and membrane lipid rafts are thought to be an active region for host-viral interactions. However, whether they contribute to the entry of BmNPV into silkworm cells remains unclear. In this study, we explored the membrane protein components of lipid rafts from BmN cells with mass spectrometry (MS). Proteins and cholesterol were investigated after establishing infection with BmNPV in BmN cells. In total, 222 proteins were identified in the lipid rafts, and Gene Ontology (GO) annotation analysis showed that more than 10% of these proteins had binding and catalytic functions. We then identified proteins that potentially interact between lipid rafts and BmNPV virions using the Virus Overlay Protein Blot Assay (VOPBA). A total of 65 proteins were analyzed with MS, and 7 were predicted to be binding proteins involved in BmNPV cellular invasion, including actin, kinesin light chain-like isoform X2, annexin B13, heat-shock protein 90, barrier-to-autointegration factor B-like and serine/arginine-rich splicing factor 1 A-like. When the cholesterol of the lipid rafts from the membrane was depleted by methyl-β-cyclodextrin (MβCD), BmNPV entry into BmN cells was blocked. However, supplying cholesterol into the medium rescued the BmNPV infection ability. These results show that membrane lipid rafts may be the active regions for the entry of BmNPV into cells, and the components of membrane lipid rafts may be candidate targets for improving the resistance of the silkworm to BmNPV.

Analysis of signal transduction in cell-free extracts and rafts of Xenopus eggs.

Science.gov (United States)

Tokmakov, Alexander A; Iwasaki, Tetsushi; Sato, Ken-Ichi; Fukami, Yasuo

2010-05-01

Intracellular signaling during egg activation/fertilization has been extensively studied using intact eggs, which can be manipulated by microinjection of different mRNAs, proteins, or chemical drugs. Furthermore, egg extracts, which retain high CSF activity (CSF-arrested extracts), were developed for studying fertilization/activation signal transduction, which have significant advantages as a model system. The addition of calcium to CSF-arrested extracts initiates a plethora of signaling events that take place during egg activation. Hence, the signaling downstream of calcium mobilization has been successfully studied in the egg extracts. Moreover, despite disruption of membrane-associated signaling compartments and ordered compartmentalization during extract preparation, CSF-arrested extracts can be successfully used to study early signaling events, which occur upstream of calcium release during egg activation/fertilization. In combination with the CSF-arrested extracts, activated egg rafts can reproduce some events of egg activation, including PLCgamma activation, IP3 production, transient calcium release, MAPK inactivation, and meiotic exit. This becomes possible due to complementation of the sperm-induced egg activation signaling machinery present in the rafts with the components of signal transduction system localized in the extracts. Herein, we describe protocols for studying molecular mechanisms of egg fertilization/activation using cell-free extracts and membrane rafts prepared from metaphase-arrested Xenopus eggs.

Hindcasting to measure ice sheet model sensitivity to initial states

Directory of Open Access Journals (Sweden)

A. Aschwanden

2013-07-01

Full Text Available Validation is a critical component of model development, yet notoriously challenging in ice sheet modeling. Here we evaluate how an ice sheet system model responds to a given forcing. We show that hindcasting, i.e. forcing a model with known or closely estimated inputs for past events to see how well the output matches observations, is a viable method of assessing model performance. By simulating the recent past of Greenland, and comparing to observations of ice thickness, ice discharge, surface speeds, mass loss and surface elevation changes for validation, we find that the short term model response is strongly influenced by the initial state. We show that the thermal and dynamical states (i.e. the distribution of internal energy and momentum can be misrepresented despite a good agreement with some observations, stressing the importance of using multiple observations. In particular we identify rates of change of spatially dense observations as preferred validation metrics. Hindcasting enables a qualitative assessment of model performance relative to observed rates of change. It thereby reduces the number of admissible initial states more rigorously than validation efforts that do not take advantage of observed rates of change.

Are lipid rafts involved in ABC transporter-mediated drug resistance of tumor cells?

NARCIS (Netherlands)

Kok, Jan Willem; Klappe, Karin; Hummel, Ina; Kroesen, Bart-Jan; Sietsma, Hannie; Meszaros, Peter

2008-01-01

Since their discovery, lipid rafts have been implicated in several cellular functions, including protein transport in polarized cells and signal transduction. Also in multidrug resistance lipid rafts may be important with regard to the localization of ATP-binding cassette (ABC) transporters in these

Antidepressants Accumulate in Lipid Rafts Independent of Monoamine Transporters to Modulate Redistribution of the G Protein, Gαs.

Science.gov (United States)

Erb, Samuel J; Schappi, Jeffrey M; Rasenick, Mark M

2016-09-16

Depression is a significant public health problem for which currently available medications, if effective, require weeks to months of treatment before patients respond. Previous studies have shown that the G protein responsible for increasing cAMP (Gαs) is increasingly localized to lipid rafts in depressed subjects and that chronic antidepressant treatment translocates Gαs from lipid rafts. Translocation of Gαs, which shows delayed onset after chronic antidepressant treatment of rats or of C6 glioma cells, tracks with the delayed onset of therapeutic action of antidepressants. Because antidepressants appear to specifically modify Gαs localized to lipid rafts, we sought to determine whether structurally diverse antidepressants accumulate in lipid rafts. Sustained treatment of C6 glioma cells, which lack 5-hydroxytryptamine transporters, showed marked concentration of several antidepressants in raft fractions, as revealed by increased absorbance and by mass fingerprint. Closely related molecules without antidepressant activity did not concentrate in raft fractions. Thus, at least two classes of antidepressants accumulate in lipid rafts and effect translocation of Gαs to the non-raft membrane fraction, where it activates the cAMP-signaling cascade. Analysis of the structural determinants of raft localization may both help to explain the hysteresis of antidepressant action and lead to design and development of novel substrates for depression therapeutics. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Modelling large-scale ice-sheet-climate interactions at the last glacial inception

Science.gov (United States)

Browne, O. J. H.; Gregory, J. M.; Payne, A. J.; Ridley, J. K.; Rutt, I. C.

2010-05-01

In order to investigate the interactions between coevolving climate and ice-sheets on multimillenial timescales, a low-resolution atmosphere-ocean general circulation model (AOGCM) has been coupled to a three-dimensional thermomechanical ice-sheet model. We use the FAMOUS AOGCM, which is almost identical in formulation to the widely used HadCM3 AOGCM, but on account of its lower resolution (7.5° longitude × 5° latitude in the atmosphere, 3.75°× 2.5° in the ocean) it runs about ten times faster. We use the community ice-sheet model Glimmer at 20 km resolution, with the shallow ice approximation and an annual degree-day scheme for surface mass balance. With the FAMOUS-Glimmer coupled model, we have simulated the growth of the Laurentide and Fennoscandian ice sheets at the last glacial inception, under constant orbital forcing and atmospheric composition for 116 ka BP. Ice grows in both regions, totalling 5.8 m of sea-level equivalent in 10 ka, slower than proxy records suggest. Positive climate feedbacks reinforce this growth at local scales (order hundreds of kilometres), where changes are an order of magnitude larger than on the global average. The albedo feedback (higher local albedo means a cooler climate) is important in the initial expansion of the ice-sheet area. The topography feedback (higher surface means a cooler climate) affects ice-sheet thickness and is not noticeable for the first 1 ka. These two feedbacks reinforce each other. Without them, the ice volume is ~90% less after 10 ka. In Laurentia, ice expands initially on the Canadian Arctic islands. The glaciation of the islands eventually cools the nearby mainland climate sufficiently to produce a positive mass balance there. Adjacent to the ice-sheets, cloud feedbacks tend to reduce the surface mass balance and restrain ice growth; this is an example of a local feedback whose simulation requires a model that includes detailed atmospheric physics.

Large-scale Modeling of the Greenland Ice Sheet on Long Timescales

DEFF Research Database (Denmark)

Solgaard, Anne Munck

is investigated as well as its early history. The studies are performed using an ice-sheet model in combination with relevant forcing from observed and modeled climate. Changes in ice-sheet geometry influences atmospheric flow (and vice versa) hereby changing the forcing patterns. Changes in the overall climate...... and climate model is included shows, however, that a Föhn effect is activated and hereby increasing temperatures inland and inhibiting further ice-sheet expansion into the interior. This indicates that colder than present temperatures are needed in order for the ice sheet to regrow to the current geometry....... Accordingto this hypothesis, two stages of uplift since the Late Miocene lead to the present-day topography. The results of the ice-sheet simulations show geometries in line with geologicobservations through the period, and it is found that the uplift events enhance the effect of the climatic deterioration...

Incorporation of ice sheet models into an Earth system model: Focus on methodology of coupling

Science.gov (United States)

Rybak, Oleg; Volodin, Evgeny; Morozova, Polina; Nevecherja, Artiom

2018-03-01

Elaboration of a modern Earth system model (ESM) requires incorporation of ice sheet dynamics. Coupling of an ice sheet model (ICM) to an AOGCM is complicated by essential differences in spatial and temporal scales of cryospheric, atmospheric and oceanic components. To overcome this difficulty, we apply two different approaches for the incorporation of ice sheets into an ESM. Coupling of the Antarctic ice sheet model (AISM) to the AOGCM is accomplished via using procedures of resampling, interpolation and assigning to the AISM grid points annually averaged meanings of air surface temperature and precipitation fields generated by the AOGCM. Surface melting, which takes place mainly on the margins of the Antarctic peninsula and on ice shelves fringing the continent, is currently ignored. AISM returns anomalies of surface topography back to the AOGCM. To couple the Greenland ice sheet model (GrISM) to the AOGCM, we use a simple buffer energy- and water-balance model (EWBM-G) to account for orographically-driven precipitation and other sub-grid AOGCM-generated quantities. The output of the EWBM-G consists of surface mass balance and air surface temperature to force the GrISM, and freshwater run-off to force thermohaline circulation in the oceanic block of the AOGCM. Because of a rather complex coupling procedure of GrIS compared to AIS, the paper mostly focuses on Greenland.

On the influence of model physics on simulations of Arctic and Antarctic sea ice

Directory of Open Access Journals (Sweden)

F. Massonnet

2011-09-01

Full Text Available Two hindcast (1983–2007 simulations are performed with the global, ocean-sea ice models NEMO-LIM2 and NEMO-LIM3 driven by atmospheric reanalyses and climatologies. The two simulations differ only in their sea ice component, while all other elements of experimental design (resolution, initial conditions, atmospheric forcing are kept identical. The main differences in the sea ice models lie in the formulation of the subgrid-scale ice thickness distribution, of the thermodynamic processes, of the sea ice salinity and of the sea ice rheology. To assess the differences in model skill over the period of investigation, we develop a set of metrics for both hemispheres, comparing the main sea ice variables (concentration, thickness and drift to available observations and focusing on both mean state and seasonal to interannual variability. Based upon these metrics, we discuss the physical processes potentially responsible for the differences in model skill. In particular, we suggest that (i a detailed representation of the ice thickness distribution increases the seasonal to interannual variability of ice extent, with spectacular improvement for the simulation of the recent observed summer Arctic sea ice retreats, (ii the elastic-viscous-plastic rheology enhances the response of ice to wind stress, compared to the classical viscous-plastic approach, (iii the grid formulation and the air-sea ice drag coefficient affect the simulated ice export through Fram Strait and the ice accumulation along the Canadian Archipelago, and (iv both models show less skill in the Southern Ocean, probably due to the low quality of the reanalyses in this region and to the absence of important small-scale oceanic processes at the models' resolution (~1°.

Caveolae/lipid rafts in fibroblast-like synoviocytes: ectopeptidase-rich membrane microdomains

DEFF Research Database (Denmark)

Riemann, D; Hansen, Gert Helge; Niels-Christiansen, L

2001-01-01

in the regulation of intra-articular levels of neuropeptides and chemotactic mediators as well as in adhesion and cell-cell interactions. Here, we report these peptidases in synoviocytes to be localized predominantly in glycolipid- and cholesterol-rich membrane microdomains known as 'rafts'. At the ultrastructural...... from about 60 to 160 nm. Cholesterol depletion of synoviocytes by methyl-beta-cyclodextrin disrupted >90% of the caveolae and reduced the raft localization of aminopeptidase N/CD13 without affecting Ala-p-nitroanilide-cleaving activity of confluent cell cultures. In co-culture experiments with T......-lymphocytes, cholesterol depletion of synoviocytes greatly reduced their capability to induce an early lymphocytic expression of aminopeptidase N/CD13. We propose caveolae/rafts to be peptidase-rich 'hot-spot' regions of the synoviocyte plasma membrane required for functional cell-cell interactions with lymphocytes...

Performance of the Goddard multiscale modeling framework with Goddard ice microphysical schemes

Science.gov (United States)

Chern, Jiun-Dar; Tao, Wei-Kuo; Lang, Stephen E.; Matsui, Toshihisa; Li, J.-L. F.; Mohr, Karen I.; Skofronick-Jackson, Gail M.; Peters-Lidard, Christa D.

2016-03-01

The multiscale modeling framework (MMF), which replaces traditional cloud parameterizations with cloud-resolving models (CRMs) within a host atmospheric general circulation model (GCM), has become a new approach for climate modeling. The embedded CRMs make it possible to apply CRM-based cloud microphysics directly within a GCM. However, most such schemes have never been tested in a global environment for long-term climate simulation. The benefits of using an MMF to evaluate rigorously and improve microphysics schemes are here demonstrated. Four one-moment microphysical schemes are implemented into the Goddard MMF and their results validated against three CloudSat/CALIPSO cloud ice products and other satellite data. The new four-class (cloud ice, snow, graupel, and frozen drops/hail) ice scheme produces a better overall spatial distribution of cloud ice amount, total cloud fractions, net radiation, and total cloud radiative forcing than earlier three-class ice schemes, with biases within the observational uncertainties. Sensitivity experiments are conducted to examine the impact of recently upgraded microphysical processes on global hydrometeor distributions. Five processes dominate the global distributions of cloud ice and snow amount in long-term simulations: (1) allowing for ice supersaturation in the saturation adjustment, (2) three additional correction terms in the depositional growth of cloud ice to snow, (3) accounting for cloud ice fall speeds, (4) limiting cloud ice particle size, and (5) new size-mapping schemes for snow and graupel. Despite the cloud microphysics improvements, systematic errors associated with subgrid processes, cyclic lateral boundaries in the embedded CRMs, and momentum transport remain and will require future improvement.

Modeling the heating and melting of sea ice through light absorption by microalgae

Science.gov (United States)

Zeebe, Richard E.; Eicken, Hajo; Robinson, Dale H.; Wolf-Gladrow, Dieter; Dieckmann, Gerhard S.

1996-01-01

In sea ice of polar regions, high concentrations of microalgae are observed during the spring. Algal standing stocks may attain peak values of over 300 mg chl a m-2 in the congelation ice habitat. As of yet, the effect of additional heating of sea ice through conversion of solar radiation into heat by algae has not been investigated in detail. Local effects, such as a decrease in albedo, increasing melt rates, and a decrease of the physical strength of ice sheets may occur. To investigate the effects of microalgae on the thermal regime of sea ice, a time-dependent, one-dimensional thermodynamic model of sea ice was coupled to a bio-optical model. A spectral one-stream model was employed to determine spectral attenuation by snow, sea ice, and microalgae. Beer's law was assumed to hold for every wavelength. Energy absorption was obtained by calculating the divergence of irradiance in every layer of the model (Δz = 1 cm). Changes in sea ice temperature profiles were calculated by solving the heat conduction equation with a finite difference scheme. Model results indicate that when algal biomass is concentrated at the bottom of congelation ice, melting of ice resulting from the additional conversion of solar radiation into heat may effectively destroy the algal habitat, thereby releasing algal biomass into the water column. An algal layer located in the top of the ice sheet induced a significant increase in sea ice temperature (ΔT > 0.3 K) for snow depths less than 5 cm and algal standing stocks higher than 150 mg chl a m-2. Furthermore, under these conditions, brine volume increased by 21% from 181 to 219 parts per thousand, which decreased the physical strength of the ice.

Data assimilation of surface altimetry on the North-Easter Ice Stream using the Ice Sheet System Model (ISSM)

Science.gov (United States)

Larour, Eric; Utke, Jean; Morlighem, Mathieu; Seroussi, Helene; Csatho, Beata; Schenk, Anton; Rignot, Eric; Khazendar, Ala

2014-05-01

Extensive surface altimetry data has been collected on polar ice sheets over the past decades, following missions such as Envisat and IceSat. This data record will further increase in size with the new CryoSat mission, the ongoing Operation IceBridge Mission and the soon to launch IceSat-2 mission. In order to make the best use of these dataset, ice flow models need to improve on the way they ingest surface altimetry to infer: 1) parameterizations of poorly known physical processes such as basal friction; 2) boundary conditions such as Surface Mass Balance (SMB). Ad-hoc sensitivity studies and adjoint-based inversions have so far been the way ice sheet models have attempted to resolve the impact of 1) on their results. As for boundary conditions or the lack thereof, most studies assume that they are a fixed quantity, which, though prone to large errors from the measurement itself, is not varied according to the simulated results. Here, we propose a method based on automatic differentiation to improve boundary conditions at the base and surface of the ice sheet during a short-term transient run for which surface altimetry observations are available. The method relies on minimizing a cost-function, the best fit between modeled surface evolution and surface altimetry observations, using gradients that are computed for each time step from automatic differentiation of the ISSM (Ice Sheet System Model) code. The approach relies on overloaded operators using the ADOLC (Automatic Differentiation by OverLoading in C++) package. It is applied to the 79 North Glacier, Greenland, for a short term transient spanning a couple of decades before the start of the retreat of the Zachariae Isstrom outlet glacier. Our results show adjustments required on the basal friction and the SMB of the whole basin to best fit surface altimetry observations, along with sensitivities each one of these parameters has on the overall cost function. Our approach presents a pathway towards assimilating

Basal friction evolution and crevasse distribution during the surge of Basin 3, Austfonna ice-cap - offline coupling between a continuum ice dynamic model and a discrete element model

Science.gov (United States)

Gong, Yongmei; Zwinger, Thomas; Åström, Jan; Gladstone, Rupert; Schellenberger, Thomas; Altena, Bas; Moore, John

2017-04-01

The outlet glacier at Basin 3, Austfonna ice-cap entered its active surge phase in autumn 2012. We assess the evolution of the basal friction during the surge through inverse modelling of basal friction coefficients using recent velocity observation from 2012 to 2014 in a continuum ice dynamic model Elmer/ice. The obtained basal friction coefficient distributions at different time instances are further used as a boundary condition in a discrete element model (HiDEM) that is capable of computing fracturing of ice. The inverted basal friction coefficient evolution shows a gradual 'unplugging' of the stagnant frontal area and northwards and inland expansion of the fast flowing region in the southern basin. The validation between the modeled crevasses distribution and the satellite observation in August 2013 shows a good agreement in shear zones inland and at the frontal area. Crevasse distributions of the summer before and after the glacier reached its maximum velocity in January 2013 (August 2012 and August 2014, respectively) are also evaluated. Previous studies suggest the triggering and development of the surge are linked to surface melt water penetrating through ice to form an efficient basal hydrology system thereby triggering a hydro- thermodynamic feedback. This preliminary offline coupling between a continuum ice dynamic model and a discrete element model will give a hint on future model development of linking supra-glacial to sub-glacial hydrology system.

A balanced water layer concept for subglacial hydrology in large-scale ice sheet models

Directory of Open Access Journals (Sweden)

S. Goeller

2013-07-01

Full Text Available There is currently no doubt about the existence of a widespread hydrological network under the Antarctic Ice Sheet, which lubricates the ice base and thus leads to increased ice velocities. Consequently, ice models should incorporate basal hydrology to obtain meaningful results for future ice dynamics and their contribution to global sea level rise. Here, we introduce the balanced water layer concept, covering two prominent subglacial hydrological features for ice sheet modeling on a continental scale: the evolution of subglacial lakes and balance water fluxes. We couple it to the thermomechanical ice-flow model RIMBAY and apply it to a synthetic model domain. In our experiments we demonstrate the dynamic generation of subglacial lakes and their impact on the velocity field of the overlaying ice sheet, resulting in a negative ice mass balance. Furthermore, we introduce an elementary parametrization of the water flux–basal sliding coupling and reveal the predominance of the ice loss through the resulting ice streams against the stabilizing influence of less hydrologically active areas. We point out that established balance flux schemes quantify these effects only partially as their ability to store subglacial water is lacking.

A balanced water layer concept for subglacial hydrology in large scale ice sheet models

Science.gov (United States)

Goeller, S.; Thoma, M.; Grosfeld, K.; Miller, H.

2012-12-01

There is currently no doubt about the existence of a wide-spread hydrological network under the Antarctic ice sheet, which lubricates the ice base and thus leads to increased ice velocities. Consequently, ice models should incorporate basal hydrology to obtain meaningful results for future ice dynamics and their contribution to global sea level rise. Here, we introduce the balanced water layer concept, covering two prominent subglacial hydrological features for ice sheet modeling on a continental scale: the evolution of subglacial lakes and balance water fluxes. We couple it to the thermomechanical ice-flow model RIMBAY and apply it to a synthetic model domain inspired by the Gamburtsev Mountains, Antarctica. In our experiments we demonstrate the dynamic generation of subglacial lakes and their impact on the velocity field of the overlaying ice sheet, resulting in a negative ice mass balance. Furthermore, we introduce an elementary parametrization of the water flux-basal sliding coupling and reveal the predominance of the ice loss through the resulting ice streams against the stabilizing influence of less hydrologically active areas. We point out, that established balance flux schemes quantify these effects only partially as their ability to store subglacial water is lacking.

Modelling and parameterizing the influence of tides on ice-shelf melt rates

Science.gov (United States)

Jourdain, N.; Molines, J. M.; Le Sommer, J.; Mathiot, P.; de Lavergne, C.; Gurvan, M.; Durand, G.

2017-12-01

Significant Antarctic ice sheet thinning is observed in several sectors of Antarctica, in particular in the Amundsen Sea sector, where warm circumpolar deep waters affect basal melting. The later has the potential to trigger marine ice sheet instabilities, with an associated potential for rapid sea level rise. It is therefore crucial to simulate and understand the processes associated with ice-shelf melt rates. In particular, the absence of tides representation in ocean models remains a caveat of numerous ocean hindcasts and climate projections. In the Amundsen Sea, tides are relatively weak and the melt-induced circulation is stronger than the tidal circulation. Using a regional 1/12° ocean model of the Amundsen Sea, we nonetheless find that tides can increase melt rates by up to 36% in some ice-shelf cavities. Among the processes that can possibly affect melt rates, the most important is an increased exchange at the ice/ocean interface resulting from the presence of strong tidal currents along the ice drafts. Approximately a third of this effect is compensated by a decrease in thermal forcing along the ice draft, which is related to an enhanced vertical mixing in the ocean interior in presence of tides. Parameterizing the effect of tides is an alternative to the representation of explicit tides in an ocean model, and has the advantage not to require any filtering of ocean model outputs. We therefore explore different ways to parameterize the effects of tides on ice shelf melt. First, we compare several methods to impose tidal velocities along the ice draft. We show that getting a realistic spatial distribution of tidal velocities in important, and can be deduced from the barotropic velocities of a tide model. Then, we explore several aspects of parameterized tidal mixing to reproduce the tide-induced decrease in thermal forcing along the ice drafts.

Representing grounding line migration in synchronous coupling between a marine ice sheet model and a z-coordinate ocean model

Science.gov (United States)

Goldberg, D. N.; Snow, K.; Holland, P.; Jordan, J. R.; Campin, J.-M.; Heimbach, P.; Arthern, R.; Jenkins, A.

2018-05-01

Synchronous coupling is developed between an ice sheet model and a z-coordinate ocean model (the MITgcm). A previously-developed scheme to allow continuous vertical movement of the ice-ocean interface of a floating ice shelf ("vertical coupling") is built upon to allow continuous movement of the grounding line, or point of floatation of the ice sheet ("horizontal coupling"). Horizontal coupling is implemented through the maintenance of a thin layer of ocean ( ∼ 1 m) under grounded ice, which is inflated into the real ocean as the ice ungrounds. This is accomplished through a modification of the ocean model's nonlinear free surface evolution in a manner akin to a hydrological model in the presence of steep bathymetry. The coupled model is applied to a number of idealized geometries and shown to successfully represent ocean-forced marine ice sheet retreat while maintaining a continuous ocean circulation.

Rotavirus infectious particles use lipid rafts during replication for transport to the cell surface in vitro and in vivo

International Nuclear Information System (INIS)

Cuadras, Mariela A.; Greenberg, Harry B.

2003-01-01

The pathway by which rotavirus is released from the cell is poorly understood but recent work has shown that, prior to cell lysis, rotavirus is released almost exclusively from the apical surface of the infected cell. By virtue of their unique biochemical and physical properties, viruses have exploited lipid rafts for host cell entry and/or assembly. Here we characterized the association of rhesus rotavirus (RRV) with lipid rafts during the rotavirus replication cycle. We found that newly synthesized infectious virus associates with rafts in vitro and in vivo. RRV proteins cosegregated with rafts on density gradients. Viral infectivity and genomic dsRNA also cosegregated with the raft fractions. Confocal microscopic analysis of raft and RRV virion proteins demonstrated colocalization within the cell. In addition, cholesterol depletion interfered with the association of RRV particles with rafts and reduced the release of infectious particles from the cell. Furthermore, murine rotavirus associates with lipid rafts in intestinal epithelial cells during a natural infection in vivo. Our results confirm the association of rotavirus infectious particles with rafts during replication in vitro and in vivo and strongly support the conclusion that this virus uses these microdomains for transport to the cell surface during replication

Implementing an empirical scalar constitutive relation for ice with flow-induced polycrystalline anisotropy in large-scale ice sheet models

Science.gov (United States)

Graham, Felicity S.; Morlighem, Mathieu; Warner, Roland C.; Treverrow, Adam

2018-03-01

The microstructure of polycrystalline ice evolves under prolonged deformation, leading to anisotropic patterns of crystal orientations. The response of this material to applied stresses is not adequately described by the ice flow relation most commonly used in large-scale ice sheet models - the Glen flow relation. We present a preliminary assessment of the implementation in the Ice Sheet System Model (ISSM) of a computationally efficient, empirical, scalar, constitutive relation which addresses the influence of the dynamically steady-state flow-compatible induced anisotropic crystal orientation patterns that develop when ice is subjected to the same stress regime for a prolonged period - sometimes termed tertiary flow. We call this the ESTAR flow relation. The effect on ice flow dynamics is investigated by comparing idealised simulations using ESTAR and Glen flow relations, where we include in the latter an overall flow enhancement factor. For an idealised embayed ice shelf, the Glen flow relation overestimates velocities by up to 17 % when using an enhancement factor equivalent to the maximum value prescribed in the ESTAR relation. Importantly, no single Glen enhancement factor can accurately capture the spatial variations in flow across the ice shelf generated by the ESTAR flow relation. For flow line studies of idealised grounded flow over varying topography or variable basal friction - both scenarios dominated at depth by bed-parallel shear - the differences between simulated velocities using ESTAR and Glen flow relations depend on the value of the enhancement factor used to calibrate the Glen flow relation. These results demonstrate the importance of describing the deformation of anisotropic ice in a physically realistic manner, and have implications for simulations of ice sheet evolution used to reconstruct paleo-ice sheet extent and predict future ice sheet contributions to sea level.

Characterization of Z-RAFT star polymerization of butyl acrylate by size-exclusion chromatography

NARCIS (Netherlands)

Boschmann, D.; Edam, R.; Schoenmakers, P.J.; Vana, P.

2009-01-01

Z-RAFT star polymerization of butyl acrylate using multifunctional trithiocarbonate-type RAFT agents carrying methyl propionate as the leaving group were used to form star polymers having 3, 4, and 6 arms. The polymerizations showed well controlled behavior up to high monomer conversions. By using a

Assessment of the sea-ice carbon pump: Insights from a three-dimensional ocean-sea-ice biogeochemical model (NEMO-LIM-PISCES

Directory of Open Access Journals (Sweden)

Sébastien Moreau

2016-08-01

Full Text Available Abstract The role of sea ice in the carbon cycle is minimally represented in current Earth System Models (ESMs. Among potentially important flaws, mentioned by several authors and generally overlooked during ESM design, is the link between sea-ice growth and melt and oceanic dissolved inorganic carbon (DIC and total alkalinity (TA. Here we investigate whether this link is indeed an important feature of the marine carbon cycle misrepresented in ESMs. We use an ocean general circulation model (NEMO-LIM-PISCES with sea-ice and marine carbon cycle components, forced by atmospheric reanalyses, adding a first-order representation of DIC and TA storage and release in/from sea ice. Our results suggest that DIC rejection during sea-ice growth releases several hundred Tg C yr−1 to the surface ocean, of which < 2% is exported to depth, leading to a notable but weak redistribution of DIC towards deep polar basins. Active carbon processes (mainly CaCO3 precipitation but also ice-atmosphere CO2 fluxes and net community production increasing the TA/DIC ratio in sea-ice modified ocean-atmosphere CO2 fluxes by a few Tg C yr−1 in the sea-ice zone, with specific hemispheric effects: DIC content of the Arctic basin decreased but DIC content of the Southern Ocean increased. For the global ocean, DIC content increased by 4 Tg C yr−1 or 2 Pg C after 500 years of model run. The simulated numbers are generally small compared to the present-day global ocean annual CO2 sink (2.6 ± 0.5 Pg C yr−1. However, sea-ice carbon processes seem important at regional scales as they act significantly on DIC redistribution within and outside polar basins. The efficiency of carbon export to depth depends on the representation of surface-subsurface exchanges and their relationship with sea ice, and could differ substantially if a higher resolution or different ocean model were used.

A combined approach of remote sensing and airborne electromagnetics to determine the volume of polynya sea ice in the Laptev Sea

Directory of Open Access Journals (Sweden)

L. Rabenstein

2013-06-01

Full Text Available A combined interpretation of synthetic aperture radar (SAR satellite images and helicopter electromagnetic (HEM sea-ice thickness data has provided an estimate of sea-ice volume formed in Laptev Sea polynyas during the winter of 2007/08. The evolution of the surveyed sea-ice areas, which were formed between late December 2007 and middle April 2008, was tracked using a series of SAR images with a sampling interval of 2–3 days. Approximately 160 km of HEM data recorded in April 2008 provided sea-ice thicknesses along profiles that transected sea ice varying in age from 1 to 116 days. For the volume estimates, thickness information along the HEM profiles was extrapolated to zones of the same age. The error of areal mean thickness information was estimated to be between 0.2 m for younger ice and up to 1.55 m for older ice, with the primary error source being the spatially limited HEM coverage. Our results have demonstrated that the modal thicknesses and mean thicknesses of level ice correlated with the sea-ice age, but that varying dynamic and thermodynamic sea-ice growth conditions resulted in a rather heterogeneous sea-ice thickness distribution on scales of tens of kilometers. Taking all uncertainties into account, total sea-ice area and volume produced within the entire surveyed area were 52 650 km2 and 93.6 ± 26.6 km3. The surveyed polynya contributed 2.0 ± 0.5% of the sea-ice produced throughout the Arctic during the 2007/08 winter. The SAR-HEM volume estimate compares well with the 112 km3 ice production calculated with a~high-resolution ocean sea-ice model. Measured modal and mean-level ice thicknesses correlate with calculated freezing-degree-day thicknesses with a factor of 0.87–0.89, which was too low to justify the assumption of homogeneous thermodynamic growth conditions in the area, or indicates a strong dynamic thickening of level ice by rafting of even thicker ice.

FEM analysis of foundation raft for 500 MWe pressurized heavy water reactor building

International Nuclear Information System (INIS)

Kulkarni, N.N.; Goray, J.S.; Joshi, M.H.; Paramasivam, V.

1989-01-01

Foundation raft supports the containment structure and internals for 500 MWe PHW reactor building. It also serves as bottom envelop of the containment structure. In view of this, the design of foundation raft assumes great importance. The foundation raft is subjected to various load, most significant of them are dead load of structure, equipment loads transferred through a system of floors, walls and structural steel columns, pressure load during accident conditions, seismic loads, earth pressure, uplift due to buoyancy loads, foundation reaction etc. In order to achieve optimum design, the detailed structural analysis is required to be performed methodically and in most realistic manner. Finite element methods which have come in vogue with the developments in digital computers can be successfully applied in this area. The paper describes the above methods in detail for the analysis of foundation raft for the various load combinations required to be considered for safe and optimum design

HC-130 Wing Life Raft Replacement Study

National Research Council Canada - National Science Library

Scher, Bob

1997-01-01

The U.S. Coast Guard (USCG) uses HC-130 aircraft for search and rescue (SAR) and other missions. The aircraft are presently equipped with two to four 20 person inflatable life rafts, stowed in cells in the wings...

Penetrating Shortwave Radiation and Sea Ice Algae feedbacks using the Community Earth System Model

Science.gov (United States)

Arntsen, A. E.; Perovich, D. K.; Bailey, D. A.; Holland, M. M.

2017-12-01

Transmittance of solar radiation through the sea ice cover determines energy transfer to the upper ocean in the form of heat as well as photosynthetically active radiation (PAR) available for the growth of under ice phytoplankton and bottom ice algal communities. A thinning ice cover, increased pond coverage, and earlier melt onset has increased light availability to the upper ocean in contemporary Arctic ice-covered waters. To investigate seasonal and spatial variability of solar shortwave irradiance penetrating the ice cover in the Beaufort and Chukchi Sea regions, we use the fully coupled Community Earth System Model (CESM) in conjunction with a multistream radiative transfer model constrained and initiated by in situ observations. Results inform the importance of light attenuation by ice-based algal pigments within large scale global climate models. We demonstrate the presence of bio-optical feedbacks related to a younger ice cover and examine how these relationships are impacting the trajectory of under ice blooms and the energy budget of the ice-ocean system.

Ice films follow structure zone model morphologies

International Nuclear Information System (INIS)

Cartwright, Julyan H.E.; Escribano, Bruno; Sainz-Diaz, C. Ignacio

2010-01-01

Ice films deposited at temperatures of 6-220 K and at low pressures in situ in a cryo-environmental scanning electron microscope show pronounced morphologies at the mesoscale consistent with the structure zone model of film growth. Water vapour was injected directly inside the chamber at ambient pressures ranging from 10 -4 Pa to 10 2 Pa. Several different substrates were used to exclude the influence of their morphology on the grown films. At the lowest temperatures the ice, which under these conditions is amorphous on the molecular scale, shows the mesoscale morphologies typical of the low-temperature zones of the structure zone model (SZM), including cauliflower, transition, spongelike and matchstick morphologies. Our experiments confirm that the SZM is independent of the chemical nature of the adsorbate, although the intermolecular interactions in water (hydrogen bonds) are different to those in ceramics or metals. At higher temperatures, on the other hand, where the ice is hexagonal crystalline on the molecular scale, it displays a complex palmlike morphology on the mesoscale.

Ice films follow structure zone model morphologies

Energy Technology Data Exchange (ETDEWEB)

Cartwright, Julyan H.E. [Instituto Andaluz de Ciencias de la Tierra, CSIC-Universidad de Granada, E-18071 Granada (Spain); Escribano, Bruno, E-mail: bruno.escribano.salazar@gmail.co [Instituto Andaluz de Ciencias de la Tierra, CSIC-Universidad de Granada, E-18071 Granada (Spain); Sainz-Diaz, C. Ignacio [Instituto Andaluz de Ciencias de la Tierra, CSIC-Universidad de Granada, E-18071 Granada (Spain)

2010-04-02

Ice films deposited at temperatures of 6-220 K and at low pressures in situ in a cryo-environmental scanning electron microscope show pronounced morphologies at the mesoscale consistent with the structure zone model of film growth. Water vapour was injected directly inside the chamber at ambient pressures ranging from 10{sup -4} Pa to 10{sup 2} Pa. Several different substrates were used to exclude the influence of their morphology on the grown films. At the lowest temperatures the ice, which under these conditions is amorphous on the molecular scale, shows the mesoscale morphologies typical of the low-temperature zones of the structure zone model (SZM), including cauliflower, transition, spongelike and matchstick morphologies. Our experiments confirm that the SZM is independent of the chemical nature of the adsorbate, although the intermolecular interactions in water (hydrogen bonds) are different to those in ceramics or metals. At higher temperatures, on the other hand, where the ice is hexagonal crystalline on the molecular scale, it displays a complex palmlike morphology on the mesoscale.

Insights into Spatial Sensitivities of Ice Mass Response to Environmental Change from the SeaRISE Ice Sheet Modeling Project I: Antarctica

Science.gov (United States)

Nowicki, Sophie; Bindschadler, Robert A.; Abe-Ouchi, Ayako; Aschwanden, Andy; Bueler, Ed; Choi, Hyengu; Fastook, Jim; Granzow, Glen; Greve, Ralf; Gutowski, Gail;

Automated parameter tuning applied to sea ice in a global climate model

Science.gov (United States)

Roach, Lettie A.; Tett, Simon F. B.; Mineter, Michael J.; Yamazaki, Kuniko; Rae, Cameron D.

2018-01-01

This study investigates the hypothesis that a significant portion of spread in climate model projections of sea ice is due to poorly-constrained model parameters. New automated methods for optimization are applied to historical sea ice in a global coupled climate model (HadCM3) in order to calculate the combination of parameters required to reduce the difference between simulation and observations to within the range of model noise. The optimized parameters result in a simulated sea-ice time series which is more consistent with Arctic observations throughout the satellite record (1980-present), particularly in the September minimum, than the standard configuration of HadCM3. Divergence from observed Antarctic trends and mean regional sea ice distribution reflects broader structural uncertainty in the climate model. We also find that the optimized parameters do not cause adverse effects on the model climatology. This simple approach provides evidence for the contribution of parameter uncertainty to spread in sea ice extent trends and could be customized to investigate uncertainties in other climate variables.

Forecasting Turbine Icing Events

DEFF Research Database (Denmark)

Davis, Neil; Hahmann, Andrea N.; Clausen, Niels-Erik

2012-01-01

In this study, we present a method for forecasting icing events. The method is validated at two European wind farms in with known icing events. The icing model used was developed using current ice accretion methods, and newly developed ablation algorithms. The model is driven by inputs from the WRF...... mesoscale model, allowing for both climatological estimates of icing and short term icing forecasts. The current model was able to detect periods of icing reasonably well at the warmer site. However at the cold climate site, the model was not able to remove ice quickly enough leading to large ice...

Ethanol alters cellular activation and CD14 partitioning in lipid rafts

International Nuclear Information System (INIS)

Dai Qun; Zhang Jun; Pruett, Stephen B.

2005-01-01

Alcohol consumption interferes with innate immunity. In vivo EtOH administration suppresses cytokine responses induced through Toll-like receptor 4 (TLR4) and inhibits TLR4 signaling. Actually, EtOH exhibits a generalized suppressive effect on signaling and cytokine responses induced by through most TLRs. However, the underlying mechanism remains unknown. RAW264.7 cells were treated with LPS or co-treated with EtOH or with lipid raft-disrupting drugs. TNF-α production, IRAK-1 activation, and CD14 partition were evaluated. EtOH or nystatin, a lipid raft-disrupting drug, suppressed LPS-induced production of TNF-α. The suppressive effect of EtOH on LPS-induced TNF-α production was additive with that of methyl-β-cyclodextrin (MCD), another lipid raft-disrupting drug. EtOH interfered with IRAK-1 activation, an early TLR4 intracellular signaling event. Cell fractionation analyses show that acute EtOH altered LPS-related partition of CD14, a critical component of the LPS receptor complex. These results suggest a novel mechanism of EtOH action that involves interference with lipid raft clustering induced by LPS. This membrane action of EtOH might be one of the mechanisms by which EtOH acts as a generalized suppressor for TLR signaling

Explicit simulation of ice particle habits in a Numerical Weather Prediction Model

Science.gov (United States)

Hashino, Tempei

2007-05-01

This study developed a scheme for explicit simulation of ice particle habits in Numerical Weather Prediction (NWP) Models. The scheme is called Spectral Ice Habit Prediction System (SHIPS), and the goal is to retain growth history of ice particles in the Eulerian dynamics framework. It diagnoses characteristics of ice particles based on a series of particle property variables (PPVs) that reflect history of microphysieal processes and the transport between mass bins and air parcels in space. Therefore, categorization of ice particles typically used in bulk microphysical parameterization and traditional bin models is not necessary, so that errors that stem from the categorization can be avoided. SHIPS predicts polycrystals as well as hexagonal monocrystals based on empirically derived habit frequency and growth rate, and simulates the habit-dependent aggregation and riming processes by use of the stochastic collection equation with predicted PPVs. Idealized two dimensional simulations were performed with SHIPS in a NWP model. The predicted spatial distribution of ice particle habits and types, and evolution of particle size distributions showed good quantitative agreement with observation This comprehensive model of ice particle properties, distributions, and evolution in clouds can be used to better understand problems facing wide range of research disciplines, including microphysics processes, radiative transfer in a cloudy atmosphere, data assimilation, and weather modification.

An Arctic Ice/Ocean Coupled Model with Wave Interactions

Science.gov (United States)

2015-09-30

discussed by DRI participants may aid our understanding as well, e.g. those conducted in the Hamburg Ship Model Basin. Our theoretical advances benefit...the project are – continued modifications to the Arctic wide WIM code in association with advances relating to a new ice/ocean model known as... Auckland , December 2014. Montiel, F. Transmission of ocean waves through a row of randomly perturbed circular ice floes. Minisymposium on Wave Motions of

Deep-apical tubules: dynamic lipid-raft microdomains in the brush-border region of enterocytes

DEFF Research Database (Denmark)

Hansen, Gert H; Pedersen, Jens; Niels-Christiansen, Lise-Lotte

2003-01-01

microdomains. Deep-apical tubules were positioned close to the actin rootlets of adjacent microvilli in the terminal web region, which had a diameter of 50-100 nm, and penetrated up to 1 microm into the cytoplasm. Markers for transcytosis, IgA and the polymeric immunoglobulin receptor, as well as the resident...... lipid raft-containing compartments, but little is otherwise known about these raft microdomains. We therefore studied in closer detail apical lipid-raft compartments in enterocytes by immunogold electron microscopy and biochemical analyses. Novel membrane structures, deep-apical tubules, were visualized...... brush-border enzyme aminopeptidase N, were present in these deep-apical tubules. We propose that deep-apical tubules are a specialized lipid-raft microdomain in the brush-border region functioning as a hub in membrane trafficking at the brush border. In addition, the sensitivity to cholesterol depletion...

Greenland ice sheet model parameters constrained using simulations of the Eemian Interglacial

Directory of Open Access Journals (Sweden)

A. Robinson

2011-04-01

Full Text Available Using a new approach to force an ice sheet model, we performed an ensemble of simulations of the Greenland Ice Sheet evolution during the last two glacial cycles, with emphasis on the Eemian Interglacial. This ensemble was generated by perturbing four key parameters in the coupled regional climate-ice sheet model and by introducing additional uncertainty in the prescribed "background" climate change. The sensitivity of the surface melt model to climate change was determined to be the dominant driver of ice sheet instability, as reflected by simulated ice sheet loss during the Eemian Interglacial period. To eliminate unrealistic parameter combinations, constraints from present-day and paleo information were applied. The constraints include (i the diagnosed present-day surface mass balance partition between surface melting and ice discharge at the margin, (ii the modeled present-day elevation at GRIP; and (iii the modeled elevation reduction at GRIP during the Eemian. Using these three constraints, a total of 360 simulations with 90 different model realizations were filtered down to 46 simulations and 20 model realizations considered valid. The paleo constraint eliminated more sensitive melt parameter values, in agreement with the surface mass balance partition assumption. The constrained simulations resulted in a range of Eemian ice loss of 0.4–4.4 m sea level equivalent, with a more likely range of about 3.7–4.4 m sea level if the GRIP δ¹⁸O isotope record can be considered an accurate proxy for the precipitation-weighted annual mean temperatures.

Efficiency of RAFT-synthesized PDMAEMA in gene transfer to the retina.

Science.gov (United States)

Bitoque, Diogo B; Simão, Sónia; Oliveira, Ana V; Machado, Susana; Duran, Margarita R; Lopes, Eduardo; da Costa, Ana M Rosa; Silva, Gabriela A

2017-01-01

Gene therapy has long been heralded as the new hope to evolve from symptomatic care of genetic pathologies to a full cure. Recent successes in using gene therapy for treating several ocular and haematopoietic pathologies have shown the great potential of this approach that, in the early days, relied on the use of viral vectors, which were considered by many to be undesirable for human treatment. Therefore, there is considerable interest and effort in developing non-viral vectors, with efficiency close to that of viral vectors. The aim of this study was to develop suitable non-viral carriers for gene therapy to treat pathologies affecting the retina. In this study poly(2-(N,N-dimethylamino)ethyl methacrylate), PDMAEMA was synthesized by reversible addition-fragmentation chain transfer (RAFT) and the in vitro cytocompatibility and transfection efficiency of a range of polymer:DNA ratios evaluated using a retinal cell line; in vivo biocompatibility was evaluated by ocular injection in C57BL/6 mice. The results showed that through RAFT, it is possible to produce a defined-size polymer that is compatible with cell viability in vitro and capable of efficiently directing gene expression in a polymer-DNA ratio-dependent manner. When injected into the eyes of mice, these vectors induced a transient, mild inflammation, characteristic of the implantation of medical devices. These results form the basis of future studies where RAFT-synthesized PDMAEMA will be used to deliver gene expression systems to the retina of mouse models of retinal pathologies. Copyright © 2014 John Wiley & Sons, Ltd. Copyright © 2014 John Wiley & Sons, Ltd.

Chronicling ice shelf history in the sediments left behind

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Rosenheim, B. E.; Subt, C.; Shevenell, A.; Guitard, M.; Vadman, K. J.; DeCesare, M.; Wellner, J. S.; Bart, P. J.; Lee, J. I.; Domack, E. W.; Yoo, K. C.; Hayes, J. M.

2017-12-01

Collapsing and retreating ice shelves leave unmistakable sediment sequences on the Antarctic margin. These sequences tell unequivocal stories of collapse or retreat through a typical progression of sub-ice shelf diamicton (marking the past positions of grounding lines), sequentially overlain by a granulated facies from beneath the ice shelf, ice rafted debris from the calving line, and finally open marine sediment. The timelines to these stories, however, are troublesome. Difficulties in chronicling these stories recorded in sediment have betrayed their importance to our understanding of a warming world in many cases. The difficulties involve the concerted lack of preservation/production of calcium carbonate tests from the water column above and admixture of relict organic material from older sources of carbon. Here, we summarize our advances in the last decade of overcoming difficulties associated with the paucity of carbonate and creating chronologies of ice shelf retreat into the deglacial history of Antarctica by exploiting the range of thermochemical stability in organic matter (Ramped PyrOx) from these sediment sequences. We describe our success in comparing Ramped PyrOx 14C dates with foraminiferal dates, the relationship between sediment facies and radiocarbon age spectrum, and our ability to push limits of dating sediments deposited underneath ice shelves. With attention to the caveats of recent dating developments, we summarize expectations that geologist should have when coring the Antarctic margins to discern deglacial history. Perhaps most important among these expectations is the ability to design coring expeditions without regard to our ability to date calcium carbonate microfossils within the cores, in essence removing suspense of knowing whether cores taken from crucial paleo ice channels and other bathymetric features will ultimately yield a robust chronology for its sedimentary sequence.

High Artic Glaciers and Ice Caps Ice Mass Change from GRACE, Regional Climate Model Output and Altimetry.

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Ciraci, E.; Velicogna, I.; Fettweis, X.; van den Broeke, M. R.

2016-12-01

The Arctic hosts more than the 75% of the ice covered regions outside from Greenland and Antarctica. Available observations show that increased atmospheric temperatures during the last century have contributed to a substantial glaciers retreat in all these regions. We use satellite gravimetry by the NASA's Gravity Recovery and Climate Experiment (GRACE), and apply a least square fit mascon approach to calculate time series of ice mass change for the period 2002-2016. Our estimates show that arctic glaciers have constantly contributed to the sea level rise during the entire observation period with a mass change of -170+/-20 Gt/yr equivalent to the 80% of the total ice mass change from the world Glacier and Ice Caps (GIC) excluding the Ice sheet peripheral GIC, which we calculated to be -215+/-32 GT/yr, with an acceleration of 9+/-4 Gt/yr2. The Canadian Archipelago is the main contributor to the total mass depletion with an ice mass trend of -73+/-9 Gt/yr and a significant acceleration of -7+/-3 Gt/yr2. The increasing mass loss is mainly determined by melting glaciers located in the northern part of the archipelago.In order to investigate the physical processes driving the observed ice mass loss we employ satellite altimetry and surface mass balance (SMB) estimates from Regional climate model outputs available for the same time period covered by the gravimetry data. We use elevation data from the NASA ICESat (2003-2009) and ESA CryoSat-2 (2010-2016) missions to estimate ice elevation changes. We compare GRACE ice mass estimates with time series of surface mass balance from the Regional Climate Model (RACMO-2) and the Modèle Atmosphérique Régional (MAR) and determine the portion of the total mass change explained by the SMB signal. We find that in Iceland and in the and the Canadian Archipelago the SMB signal explains most of the observed mass changes, suggesting that ice discharge may play a secondary role here. In other region, e.g. in Svalbar, the SMB signal

Flight Testing an Iced Business Jet for Flight Simulation Model Validation

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Ratvasky, Thomas P.; Barnhart, Billy P.; Lee, Sam; Cooper, Jon

2007-01-01

A flight test of a business jet aircraft with various ice accretions was performed to obtain data to validate flight simulation models developed through wind tunnel tests. Three types of ice accretions were tested: pre-activation roughness, runback shapes that form downstream of the thermal wing ice protection system, and a wing ice protection system failure shape. The high fidelity flight simulation models of this business jet aircraft were validated using a software tool called "Overdrive." Through comparisons of flight-extracted aerodynamic forces and moments to simulation-predicted forces and moments, the simulation models were successfully validated. Only minor adjustments in the simulation database were required to obtain adequate match, signifying the process used to develop the simulation models was successful. The simulation models were implemented in the NASA Ice Contamination Effects Flight Training Device (ICEFTD) to enable company pilots to evaluate flight characteristics of the simulation models. By and large, the pilots confirmed good similarities in the flight characteristics when compared to the real airplane. However, pilots noted pitch up tendencies at stall with the flaps extended that were not representative of the airplane and identified some differences in pilot forces. The elevator hinge moment model and implementation of the control forces on the ICEFTD were identified as a driver in the pitch ups and control force issues, and will be an area for future work.

Translating hydrologically-relevant variables from the ice sheet model SICOPOLIS to the Greenland Analog Project hydrologic modeling domain

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Vallot, Dorothée; Applegate, Patrick; Pettersson, Rickard

2013-04-01

Projecting future climate and ice sheet development requires sophisticated models and extensive field observations. Given the present state of our knowledge, it is very difficult to say what will happen with certainty. Despite the ongoing increase in atmospheric greenhouse gas concentrations, the possibility that a new ice sheet might form over Scandinavia in the far distant future cannot be excluded. The growth of a new Scandinavian Ice Sheet would have important consequences for buried nuclear waste repositories. The Greenland Analogue Project, initiated by the Swedish Nuclear Fuel and Waste Management Company (SKB), is working to assess the effects of a possible future ice sheet on groundwater flow by studying a constrained domain in Western Greenland by field measurements (including deep bedrock drilling in front of the ice sheet) combined with numerical modeling. To address the needs of the GAP project, we interpolated results from an ensemble of ice sheet model runs to the smaller and more finely resolved modeling domain used in the GAP project's hydrologic modeling. Three runs have been chosen with three fairly different positive degree-day factors among those that reproduced the modern ice margin at the borehole position. The interpolated results describe changes in hydrologically-relevant variables over two time periods, 115 ka to 80 ka, and 20 ka to 1 ka. In the first of these time periods, the ice margin advances over the model domain; in the second time period, the ice margin retreats over the model domain. The spatially-and temporally dependent variables that we treated include the ice thickness, basal melting rate, surface mass balance, basal temperature, basal thermal regime (frozen or thawed), surface temperature, and basal water pressure. The melt flux is also calculated.

Investigation of land ice-ocean interaction with a fully coupled ice-ocean model: 2. Sensitivity to external forcings

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Goldberg, D. N.; Little, C. M.; Sergienko, O. V.; Gnanadesikan, A.; Hallberg, R.; Oppenheimer, M.

2012-06-01

A coupled ice stream-ice shelf-ocean cavity model is used to assess the sensitivity of the coupled system to far-field ocean temperatures, varying from 0.0 to 1.8°C, as well as sensitivity to the parameters controlling grounded ice flow. A response to warming is seen in grounding line retreat and grounded ice loss that cannot be inferred from the response of integrated melt rates alone. This is due to concentrated thinning at the ice shelf lateral margin, and to processes that contribute to this thinning. Parameters controlling the flow of grounded ice have a strong influence on the response to sub-ice shelf melting, but this influence is not seen until several years after an initial perturbation in temperatures. The simulated melt rates are on the order of that observed for Pine Island Glacier in the 1990s. However, retreat rates are much slower, possibly due to unrepresented bedrock features.

Preparation of well-defined erythromycin imprinted non-woven fabrics via radiation-induced RAFT-mediated grafting

Science.gov (United States)

Söylemez, Meshude Akbulut; Barsbay, Murat; Güven, Olgun

2018-01-01

Radiation-induced RAFT polymerization technique was applied to synthesize well-defined molecularly imprinted polymers (MIPs) of erythromycin (ERY). Methacrylic acid (MAA) was grafted onto porous polyethylene (PE)/polypropylene (PP) nonwoven fabrics, under γ-irradiation by employing 2-pheny-2-propyl benzodithioate as the RAFT agent and ethylene glycol dimethacrylate (EGDMA) as the crosslinker. MAA/erythromycin ratios of 2/1, 4/1, 6/1 were tested to optimize the synthesis of MIPs. The highest binding capacity was encountered at a MAA/ERY ratio of 4/1. Non-imprinted polymers (NIPs) were also synthesized in the absence of ERY. The MIPs synthesized by RAFT method presented a better binding capacity compared to those prepared by conventional method where no RAFT agent was employed.

The influence of ice sheets on temperature during the past 38 million years inferred from a one-dimensional ice sheet-climate model

Science.gov (United States)

Stap, Lennert B.; van de Wal, Roderik S. W.; de Boer, Bas; Bintanja, Richard; Lourens, Lucas J.

2017-09-01

Since the inception of the Antarctic ice sheet at the Eocene-Oligocene transition (˜ 34 Myr ago), land ice has played a crucial role in Earth's climate. Through feedbacks in the climate system, land ice variability modifies atmospheric temperature changes induced by orbital, topographical, and greenhouse gas variations. Quantification of these feedbacks on long timescales has hitherto scarcely been undertaken. In this study, we use a zonally averaged energy balance climate model bidirectionally coupled to a one-dimensional ice sheet model, capturing the ice-albedo and surface-height-temperature feedbacks. Potentially important transient changes in topographic boundary conditions by tectonics and erosion are not taken into account but are briefly discussed. The relative simplicity of the coupled model allows us to perform integrations over the past 38 Myr in a fully transient fashion using a benthic oxygen isotope record as forcing to inversely simulate CO2. Firstly, we find that the results of the simulations over the past 5 Myr are dependent on whether the model run is started at 5 or 38 Myr ago. This is because the relation between CO2 and temperature is subject to hysteresis. When the climate cools from very high CO2 levels, as in the longer transient 38 Myr run, temperatures in the lower CO2 range of the past 5 Myr are higher than when the climate is initialised at low temperatures. Consequently, the modelled CO2 concentrations depend on the initial state. Taking the realistic warm initialisation into account, we come to a best estimate of CO2, temperature, ice-volume-equivalent sea level, and benthic δ18O over the past 38 Myr. Secondly, we study the influence of ice sheets on the evolution of global temperature and polar amplification by comparing runs with ice sheet-climate interaction switched on and off. By passing only albedo or surface height changes to the climate model, we can distinguish the separate effects of the ice-albedo and surface

An ice-cream cone model for coronal mass ejections

Science.gov (United States)

Xue, X. H.; Wang, C. B.; Dou, X. K.

2005-08-01

In this study, we use an ice-cream cone model to analyze the geometrical and kinematical properties of the coronal mass ejections (CMEs). Assuming that in the early phase CMEs propagate with near-constant speed and angular width, some useful properties of CMEs, namely the radial speed (v), the angular width (α), and the location at the heliosphere, can be obtained considering the geometrical shapes of a CME as an ice-cream cone. This model is improved by (1) using an ice-cream cone to show the near real configuration of a CME, (2) determining the radial speed via fitting the projected speeds calculated from the height-time relation in different azimuthal angles, (3) not only applying to halo CMEs but also applying to nonhalo CMEs.

Improved Upper Ocean/Sea Ice Modeling in the GISS GCM for Investigating Climate Change