PIV Measurements on a Blowing Flap

Science.gov (United States)

Hutcheson, Florence V.; Stead, Daniel J.

2004-01-01

PIV measurements of the flow in the region of a flap side edge are presented for several blowing flap configurations. The test model is a NACA 63(sub 2)-215 Hicks Mod-B main-element airfoil with a half-span Fowler flap. Air is blown from small slots located along the flap side edge on either the top, bottom or side surfaces. The test set up is described and flow measurements for a baseline and three blowing flap configurations are presented. The effects that the flap tip jets have on the structure of the flap side edge flow are discussed for each of the flap configurations tested. The results indicate that blowing air from a slot located along the top surface of the flap greatly weakened the top vortex system and pushed it further off the top surface. Blowing from the bottom flap surface kept the strong side vortex further outboard while blowing from the side surface only strengthened the vortex system or accelerated the merging of the side vortex to the flap top surface. It is concluded that blowing from the top or bottom surfaces of the flap may lead to a reduction of flap side edge noise.

Changes in genomic methylation patterns during the formation of triploid asexual dandelion lineages

NARCIS (Netherlands)

Verhoeven, K.J.F.; Van Dijk, P.J.; Biere, A.

2010-01-01

DNA methylation is an epigenetic mechanism that has the potential to affect plant phenotypes and that is responsive to environmental and genomic stresses such as hybridization and polyploidization. We explored de novo methylation variation that arises during the formation of triploid asexual

Blow-up for a three dimensional Keller-Segel model with consumption of chemoattractant

Science.gov (United States)

Jiang, Jie; Wu, Hao; Zheng, Songmu

2018-04-01

We investigate blow-up properties for the initial-boundary value problem of a Keller-Segel model with consumption of chemoattractant when the spatial dimension is three. Through a kinetic reformulation of the Keller-Segel system, we first derive some higher-order estimates and obtain certain blow-up criteria for the local classical solutions. These blow-up criteria generalize the results in [4,5] from the whole space R3 to the case of bounded smooth domain Ω ⊂R3. Lower global blow-up estimate on ‖ n ‖ L∞ (Ω) is also obtained based on our higher-order estimates. Moreover, we prove local non-degeneracy for blow-up points.

Field observations of the electrostatic charges of blowing snow in Hokkaido, Japan

Science.gov (United States)

Omiya, S.; Sato, A.

2011-12-01

An electrostatic charge of blowing snow may be a contributing factor in the formation of a snow drift and a snow cornice, and changing of the trajectory of own motion. However, detailed electrification characteristics of blowing snow are not known as there are few reports of charge measurements. We carried out field observations of the electrostatic charges of blowing snow in Tobetsu, Hokkaido, Japan in the mid winter of 2011. An anemovane and a thermohygrometer were used for the meteorological observation. Charge-to-mass ratios of blowing snow were obtained by a Faraday-cage, an electrometer and an electric balance. In this observation period, the air temperature during the blowing snow event was -6.5 to -0.5 degree Celsius. The measured charges in this observation were consistent with the previous studies in sign, which is negative, but they were smaller than the previous one. In most cases, the measured values increased with the temperature decrease, which corresponds with previous studies. However, some results contradicted the tendency, and the maximum value was obtained on the day of the highest air temperature of -0.5 degree Celsius. This discrepancy may be explained from the difference of the snow surface condition on observation day. The day when the maximum value was obtained, the snow surface was covered with old snow, and hard. On the other hand, in many other cases, the snow surface was covered with the fresh snow, and soft. Blowing snow particles on the hard surface can travel longer distance than on the soft one. Therefore, it can be surmised that the hard surface makes the blowing snow particles accumulate a lot of negative charges due to a large number of collisions to the surface. This can be supported by the results of the wind tunnel experiments by Omiya and Sato (2011). By this field observation, it was newly suggested that the electrostatic charge of blowing snow are influenced greatly by the difference of the snow surface condition. REFERENCE

Blow up of solutions to ordinary differential equations arising in nonlinear dispersive problems

Directory of Open Access Journals (Sweden)

Milena Dimova

2018-03-01

Full Text Available We study a new class of ordinary differential equations with blow up solutions. Necessary and sufficient conditions for finite blow up time are proved. Based on the new differential equation, a revised version of the concavity method of Levine is proposed. As an application we investigate the non-existence of global solutions to the Cauchy problem of Klein-Gordon, and to the double dispersive equations. We obtain necessary and sufficient condition for finite time blow up with arbitrary positive energy. A very general sufficient condition for blow up is also given.

The effects of local blowing perturbations on thermal turbulent structures

Science.gov (United States)

Liu, Can; Araya, Guillermo; Leonardi, Stefano; Castillo, Luciano

2013-11-01

Blowing is an active flow control technique with several industrial applications, particularly in film cooling of turbine blades. In the past, the effects of localized blowing have been mostly analyzed on the velocity field and its influence of the flow parameters and turbulence structures (Krogstad and Kourakine, 2000). However, little literature can be found on the effects of blowing on the coherent thermal structures. In the present study, an incompressible turbulent channel flow with given steady blowing at the wall is simulated via DNS by means of five spanwise holes. The Reynolds number based on the friction velocity and half channel height is approximately Re = 394 and the molecular Prandtl number is Pr = 0.71. Temperature is considered a passive scalar with isothermal conditions at the wall. Different blowing amplitudes and perturbing angles (with respect to the streamwise direction) are applied to find out their effects on the turbulent thermal structures by means of a two-point correlation analysis. In addition, local reduction and increase of drag are connected to vorticity. The corresponding influence of perturbing amplitudes and angles on the energy budget of thermal fluctuations and turbulent Prandtl numbers are also shown and discussed.

Developing and teaching the virtue-ethics foundations of healthcare whistle blowing.

Science.gov (United States)

Faunce, Thomas

2004-10-01

Healthcare whistle blowing, despite the benefits it has brought to healthcare systems in many developed countries, remains generally regarded as a pariah activity by many of the most influential healthcare professionals and regulatory institutions. Few if any medical schools or law department health law and bioethics classes, teach whistle blowing in a formal sense. Yet without exception, public inquiries initiated by healthcare whistle blowers have validated their central allegations and demonstrated that the whistle blowers themselves were sincere in their desire to implement the fundamental virtues and principles of medical ethics, bioethics and public health law. In many jurisdictions, the law, this time remarkably in advance of professional opinion, has offered legislative protection for reasonable allegations of whistleblowers made in good faith and in the public interest concerning a substantial and imminent threat to public safety. One reason for this paradoxical position, explored here, is that healthcare whistle blowing lacks a firm virtue-based theoretical bioethical and jurisprudential foundation. The hypothesis discussed is that the lack of this bioethical and jurisprudential substrate has contributed to a situation where healthcare whistle blowing suffers in terms of institutional support due to its lack of academic legitimacy. This article commences the process of redressing this imbalance by attempting to lay the theoretical foundations for healthcare whistle blowing. As a case study, this article concludes by discussing the Personal and Professional Development course at the ANU Medical School where healthcare whistle blowing is a formal part of a virtue-based curriculum that emphasises the foundational importance of conscience. Illustrative elements of that program are discussed.

Occurrence of blow fly species (Diptera: calliphoridae) in Phitsanulok Province, Northern Thailand.

Science.gov (United States)

Bunchu, Nophawan; Sukontason, Kom; Sanit, Sangob; Chidburee, Polprecha; Kurahashi, Hiromu; Sukontason, Kabkaew L

2012-12-01

Based on the current forensic importance of blow flies (Diptera: Calliphoridae), their biological aspects have been studied increasingly worldwide. The blow fly fauna in Phitsanulok Province, Northern Thailand was studied from May 2009 to April 2010 in the residential, agricultural, mountainous and forested areas of Muang, Wat Bot, Nakhon Thai and Wang Thong districts, respectively, in order to know the occurrence of blow flies in this province. Collections were carried out monthly using commercial funnel fly traps and sweeping methods, with 1-day tainted pork viscera as bait. Identification of adult blow flies exhibited 14 634 specimens, comprising of 5 subfamilies, 14 genera and 36 species. Chrysomya megacephala (Fabricius, 1794) and Achoetandrus rufifacies (Macquart, 1843) were the most and second most abundant species trapped, respectively. These two species of carrion flies prevailed in all the types of land investigated. We calculated and compared the diversity indices, species evenness and richness, and similarity coefficients of the blow fly species in various areas. The data from this study may be used to identify the potential of forensicallyimportant fly species within Phitsanulok Province and fulfill the information on blow fly fauna in Thailand.

Blow-up boundary regimes for general quasilinear parabolic equations in multidimensional domains

International Nuclear Information System (INIS)

Shishkov, A E; Shchelkov, A G

1999-01-01

A new approach (not based on the techniques of barriers) to the study of asymptotic properties of the generalized solutions of parabolic initial boundary-value problems with finite-time blow-up of the boundary values is proposed. Precise conditions on the blow-up pattern are found that guarantee uniform localization of the solution for an arbitrary compactly supported initial function. The main result of the paper consists in obtaining precise sufficient conditions for the singular (or blow-up) set of an arbitrary solution to remain within the boundary of the domain

Heterotic Mini-landscape in blow-up

CERN Document Server

Bizet, Nana Geraldine Cabo

2013-01-01

Localization properties of fields in compact extra dimensions are crucial ingredients for string model building, particularly in the framework of orbifold compactifications. Realistic models often require a slight deviation from the orbifold point, that can be analyzed using field theoretic methods considering (singlet) fields with nontrivial vacuum expectation values. Some of these fields correspond to blow-up modes that represent the resolution of orbifold singularities. Improving on previous analyses we give here an explicit example of the blow-up of a model from the heterotic Mini-landscape. An exact identification of the blow-up modes at various fixed points and fixed tori with orbifold twisted fields is given. We match the massless spectra and identify the blow-up modes as non-universal axions of compactified string theory. We stress the important role of the Green-Schwarz anomaly polynomial for the description of the resolution of orbifold singularities.

Investigation of Airfoil Aeroacoustics with Blowing Control Mechanism

Directory of Open Access Journals (Sweden)

Baha ZAFER

2016-11-01

Full Text Available In this investigation, it is dealt with computational aero-acoustic analysis of an airfoil with jet blowing. The airfoil shape is selected as NACA0015 profile with jet blowing on upper surface. The calculations of analysis are done by using commercial finite volume solver. The k-ε turbulence model is used for the turbulence modeling and the Ffowcs Williams and Hawking acoustic analogy model is run for determination of acoustic data. The numerical results are compared with experimental data for computed Sound Pressure Level without jet blowing and well agreement is observed. In the case of jet blowing, the effects of different jet angle, velocity ratio and angle of attack on airfoil are investigated and noise levels of non jet cases and jet blowing cases are studied.

Methylation of ribonucleic acid by the carcinogens dimethyl sulphate, N-methyl-N-nitrosourea and N-methyl-N′-nitro-N-nitrosoguanidine. Comparisons of chemical analyses at the nucleoside and base levels

Science.gov (United States)

Lawley, P. D.; Shah, S. A.

1972-01-01

1. The following methods for hydrolysis of methyl-14C-labelled RNA, and for chromatographic isolation and determination of the products, were investigated: enzymic digestion to nucleosides at pH6 or 8; alkaline hydrolysis and conversion into nucleosides; hydrolysis by acid to pyrimidine nucleotides and purine bases, or completely to bases; chromatography on Dowex 50 (NH4+ form) at pH6 or 8.9, or on Dowex 50 (H+ form), or on Sephadex G-10. 2. The suitability of the various methods for determination of methylation products was assessed. The principal product, 7-methylguanosine, was unstable under the conditions used for determinations of nucleosides. 3- and 7-Methyladenine and 3- and 7-methylguanine are best determined as bases; 1-methyladenine and 3-methylcytosine can be isolated as either nucleosides or bases; O6-methylguanine is unstable under the acid hydrolysis conditions used and can be determined as the nucleoside; 3-methyluracil was detected, but may be derived from methylation of the ionized form of uracil. 3. Differences between the patterns of methylation of RNA and homopolyribonucleotides by the N-methyl-N-nitroso compounds and dimethyl sulphate were found: the nitroso compounds were able to methylate O-6 of guanine, were relatively more reactive at N-7 of adenine and probably at N-3 of guanine, but less reactive at N-1 of adenine, N-3 of cytosine and probably at N-3 of uridine. They probably reacted more with the ribose–phosphate chain, but no products from this were identified. 4. The possible influences of these differences on biological action of the methylating agents is discussed. Nitroso compounds may differ principally in their ability to induce miscoding in the Watson–Crick sense by reaction at O-6 of guanine. Both types of agent may induce miscoding to a lesser extent through methylation at N-3 of guanine; both can methylate N atoms, presumably preventing Watson–Crick hydrogen-bonding. N-Methyl-N-nitrosourea can degrade RNA, possibly

Complex formation of technetium with the methyl esters of MAG2 and MAG1

International Nuclear Information System (INIS)

Noll, B.; Noll, S.; Grosse, B.; Johannsen, B.; Spies, H.

1993-01-01

Mercaptoacetylglycine methyl ester (MAG 2 ester) and mercaptoacetyldiglycine methyl ester (MAG 1 ester) were included to investigate complex formation of SH/amide ligands with technetium. The studies are aimed at finding out how blocking the carboxylic groups influences the complexation reaction, with a view to finding an approach to new lipophilic species. (orig./BBR)

Whistle-blowing

International Nuclear Information System (INIS)

Fitzgerald, K.

1990-01-01

In this paper five engineers in nuclear power, aerospace, and air-traffic control recount their experiences in following their consciences. Exposing errors or unethical conduct in any occupation is risky, but when engineering judgement is involved, the risks of blowing the whistle acquire an added dimension. A technical decision cannot always be categorized as strictly right or wrong - unlike situations in which an organization is falsifying documents or overcharging for a product. Consequently, the engineer must be convinced of being right and then wait, sometimes years and even decades after lives are lost or millions of dollars are spent, to be proved right or wrong. Frequently, the whistle-blower's career is destroyed in the meantime. In the following cases, which date from the 1970s and 1980s, the whistle-blowers have by now been vindicated to a degree for their actions, though the verdict may not be unanimous. And the careers of the first group may have even benefitted by blowing the whistle

Mathematical model of whole-process calculation for bottom-blowing copper smelting

Science.gov (United States)

Li, Ming-zhou; Zhou, Jie-min; Tong, Chang-ren; Zhang, Wen-hai; Li, He-song

2017-11-01

The distribution law of materials in smelting products is key to cost accounting and contaminant control. Regardless, the distribution law is difficult to determine quickly and accurately by mere sampling and analysis. Mathematical models for material and heat balance in bottom-blowing smelting, converting, anode furnace refining, and electrolytic refining were established based on the principles of material (element) conservation, energy conservation, and control index constraint in copper bottom-blowing smelting. Simulation of the entire process of bottom-blowing copper smelting was established using a self-developed MetCal software platform. A whole-process simulation for an enterprise in China was then conducted. Results indicated that the quantity and composition information of unknown materials, as well as heat balance information, can be quickly calculated using the model. Comparison of production data revealed that the model can basically reflect the distribution law of the materials in bottom-blowing copper smelting. This finding provides theoretical guidance for mastering the performance of the entire process.

Blow-up: A Free Lunch?

Directory of Open Access Journals (Sweden)

Jan Koenderink

2012-02-01

Full Text Available We consider operations that change the size of images, either shrinks or blow-ups. Image processing offers numerous possibilities, put at everyone's disposal with such computer programs as Adobe Photoshop. We consider a different class of operations, aimed at immediate visual awareness, rather than pixel arrays. We demonstrate cases of blow-ups that do not sacrifice apparent resolution. This apparent information gain is due to “amodal occlusion.”

Study of radiation formation of methyl-iodide Part 2

International Nuclear Information System (INIS)

Bartonicek, B.; Schweiner, Z.; Bednar, J.; Hladky, E.

1975-01-01

Purified methane, ethylene, iodine, methyl iodide, ethyl iodide and hydrogen iodide were irradiated and/or pyrolyzed in Pyrex ampoules by 60 Co-γ-radiation at temperatures between 150 and 450 deg C. The results on radiolysis and pyrolysis were as follows: 1., The most thermally stable product is hydrogen iodide in which already at 450 deg C essen-tially all originally present iodine appears. 2., The radiolytic formation of methyl iodide and hydrogen iodide is positively influenced by the rise in temperature, This and the absolute values of yields indicate a chain mechanism of radiolytic (and pyrolytic) decomposition of the mixture. 3., The ratio of equilibrium concentrations [HI]/[CH 3 I] increases with increasing temperature of pyrolysis showing that HI is the end product of the thermal chain reaction. Methyl iodide is likely to contribute (by its thermal decomposition) to the initiation and propagation of this chain reaction. 4., The negligible temperature dependence of G(H 2 ) and the absence of molecular hydrogen among the products of pyrolytic decomposition of methane-iodine mixtures shows, that (up to 450 deg C) H atoms do not play any role in the thermal chain decomposition of these mixtures. (K.A.)

{sup 13}C-METHYL FORMATE: OBSERVATIONS OF A SAMPLE OF HIGH-MASS STAR-FORMING REGIONS INCLUDING ORION-KL AND SPECTROSCOPIC CHARACTERIZATION

Energy Technology Data Exchange (ETDEWEB)

Favre, Cécile; Bergin, Edwin A.; Crockett, Nathan R.; Neill, Justin L. [Department of Astronomy, University of Michigan, 500 Church Street, Ann Arbor, MI 48109 (United States); Carvajal, Miguel [Dpto. Física Aplicada, Unidad Asociada CSIC, Facultad de Ciencias Experimentales, Universidad de Huelva, E-21071 Huelva (Spain); Field, David [Department of Physics and Astronomy, University of Aarhus, Ny Munkegade 120, DK-8000 Aarhus C (Denmark); Jørgensen, Jes K.; Bisschop, Suzanne E. [Centre for Star and Planet Formation, Niels Bohr Institute, University of Copenhagen, Juliane Maries Vej 30, DK-2100 Copenhagen Ø (Denmark); Brouillet, Nathalie; Despois, Didier; Baudry, Alain [Univ. Bordeaux, LAB, UMR 5804, F-33270, Floirac (France); Kleiner, Isabelle [Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA), CNRS, UMR 7583, Université de Paris-Est et Paris Diderot, 61, Av. du Général de Gaulle, F-94010 Créteil Cedex (France); Margulès, Laurent; Huet, Thérèse R.; Demaison, Jean, E-mail: cfavre@umich.edu, E-mail: miguel.carvajal@dfa.uhu.es [Laboratoire de Physique des Lasers, Atomes et Molécules, UMR CNRS 8523, Université Lille I, F-59655 Villeneuve d' Ascq Cedex (France)

2015-01-01

We have surveyed a sample of massive star-forming regions located over a range of distances from the Galactic center for methyl formate, HCOOCH{sub 3}, and its isotopologues H{sup 13}COOCH{sub 3} and HCOO{sup 13}CH{sub 3}. The observations were carried out with the APEX telescope in the frequency range 283.4-287.4 GHz. Based on the APEX observations, we report tentative detections of the {sup 13}C-methyl formate isotopologue HCOO{sup 13}CH{sub 3} toward the following four massive star-forming regions: Sgr B2(N-LMH), NGC 6334 IRS 1, W51 e2, and G19.61-0.23. In addition, we have used the 1 mm ALMA science verification observations of Orion-KL and confirm the detection of the {sup 13}C-methyl formate species in Orion-KL and image its spatial distribution. Our analysis shows that the {sup 12}C/{sup 13}C isotope ratio in methyl formate toward the Orion-KL Compact Ridge and Hot Core-SW components (68.4 ± 10.1 and 71.4 ± 7.8, respectively) are, for both the {sup 13}C-methyl formate isotopologues, commensurate with the average {sup 12}C/{sup 13}C ratio of CO derived toward Orion-KL. Likewise, regarding the other sources, our results are consistent with the {sup 12}C/{sup 13}C in CO. We also report the spectroscopic characterization, which includes a complete partition function, of the complex H{sup 13}COOCH{sub 3} and HCOO{sup 13}CH{sub 3} species. New spectroscopic data for both isotopomers H{sup 13}COOCH{sub 3} and HCOO{sup 13}CH{sub 3}, presented in this study, have made it possible to measure this fundamentally important isotope ratio in a large organic molecule for the first time.

Methyl Gallate Inhibits Osteoclast Formation and Function by Suppressing Akt and Btk-PLCγ2-Ca2+ Signaling and Prevents Lipopolysaccharide-Induced Bone Loss.

Science.gov (United States)

Baek, Jong Min; Kim, Ju-Young; Lee, Chang Hoon; Yoon, Kwon-Ha; Lee, Myeung Su

2017-03-07

In the field of bone research, various natural derivatives have emerged as candidates for osteoporosis treatment by targeting abnormally elevated osteoclastic activity. Methyl gallate, a plant-derived phenolic compound, is known to have numerous pharmacological effects against inflammation, oxidation, and cancer. Our purpose was to explore the relation between methyl gallate and bone metabolism. Herein, we performed screening using methyl gallate by tartrate resistant acid phosphatase (TRAP) staining and revealed intracellular mechanisms responsible for methyl gallate-mediated regulation of osteoclastogenesis by Western blotting and quantitative reverse transcription polymerase chain reaction (RT-PCR). Furthermore, we assessed the effects of methyl gallate on the characteristics of mature osteoclasts. We found that methyl gallate significantly suppressed osteoclast formation through Akt and Btk-PLCγ2-Ca 2+ signaling. The blockade of these pathways was confirmed through transduction of cells with a CA-Akt retrovirus and evaluation of Ca 2+ influx intensity (staining with Fluo-3/AM). Indeed, methyl gallate downregulated the formation of actin ring-positive osteoclasts and resorption pit areas. In agreement with in vitro results, we found that administration of methyl gallate restored osteoporotic phenotype stimulated by acute systemic injection of lipopolysaccharide in vivo according to micro-computed tomography and histological analysis. Our data strongly indicate that methyl gallate may be useful for the development of a plant-based antiosteoporotic agent.

Methyl Gallate Inhibits Osteoclast Formation and Function by Suppressing Akt and Btk-PLCγ2-Ca2+ Signaling and Prevents Lipopolysaccharide-Induced Bone Loss

Directory of Open Access Journals (Sweden)

Jong Min Baek

2017-03-01

Full Text Available In the field of bone research, various natural derivatives have emerged as candidates for osteoporosis treatment by targeting abnormally elevated osteoclastic activity. Methyl gallate, a plant-derived phenolic compound, is known to have numerous pharmacological effects against inflammation, oxidation, and cancer. Our purpose was to explore the relation between methyl gallate and bone metabolism. Herein, we performed screening using methyl gallate by tartrate resistant acid phosphatase (TRAP staining and revealed intracellular mechanisms responsible for methyl gallate-mediated regulation of osteoclastogenesis by Western blotting and quantitative reverse transcription polymerase chain reaction (RT-PCR. Furthermore, we assessed the effects of methyl gallate on the characteristics of mature osteoclasts. We found that methyl gallate significantly suppressed osteoclast formation through Akt and Btk-PLCγ2-Ca2+ signaling. The blockade of these pathways was confirmed through transduction of cells with a CA-Akt retrovirus and evaluation of Ca2+ influx intensity (staining with Fluo-3/AM. Indeed, methyl gallate downregulated the formation of actin ring-positive osteoclasts and resorption pit areas. In agreement with in vitro results, we found that administration of methyl gallate restored osteoporotic phenotype stimulated by acute systemic injection of lipopolysaccharide in vivo according to micro-computed tomography and histological analysis. Our data strongly indicate that methyl gallate may be useful for the development of a plant-based antiosteoporotic agent.

Use of cooling tower blow down in ethanol fermentation.

Science.gov (United States)

Rajagopalan, N; Singh, V; Panno, B; Wilcoxon, M

2010-01-01

Reducing water consumption in bioethanol production conserves an increasingly scarce natural resource, lowers production costs, and minimizes effluent management issues. The suitability of cooling tower blow down water for reuse in fermentation was investigated as a means to lower water consumption. Extensive chemical characterization of the blow down water revealed low concentrations of toxic elements and total dissolved solids. Fermentation carried out with cooling tower blow down water resulted in similar levels of ethanol and residual glucose as a control study using deionized water. The study noted good tolerance by yeast to the specific scale and corrosion inhibitors found in the cooling tower blow down water. This research indicates that, under appropriate conditions, reuse of blow down water from cooling towers in fermentation is feasible.

Assessing the stretch-blow moulding FE simulation of PET over a large process window

Science.gov (United States)

Nixon, J.; Menary, G. H.; Yan, S.

2017-10-01

Injection stretch blow moulding has been extensively researched for numerous years and is a well-established method of forming thin-walled containers. This paper is concerned with validating the finite element analysis of the stretch-blow-moulding (SBM) process in an effort to progress the development of injection stretch blow moulding of poly(ethylene terephthalate). Extensive data was obtained experimentally over a wide process window accounting for material temperature, air flow rate and stretch-rod speed while capturing cavity pressure, stretch-rod reaction force, in-mould contact timing and material thickness distribution. This data was then used to assess the accuracy of the correlating FE simulation constructed using ABAQUS/Explicit solver and an appropriate user-defined viscoelastic material subroutine. Results reveal that the simulation was able to pick up the general trends of how the pressure, reaction force and in-mould contact timings vary with the variation in preform temperature and air flow rate. Trends in material thickness were also accurately predicted over the length of the bottle relative to the process conditions. The knowledge gained from these analyses provides insight into the mechanisms of bottle formation, subsequently improving the blow moulding simulation and potentially providing a reduction in production costs.

Holes at High Blowing Ratios

Directory of Open Access Journals (Sweden)

Phillip M. Ligrani

1996-01-01

Full Text Available Experimental results are presented which describe the development and structure of flow downstream of a single row of holes with compound angle orientations producing film cooling at high blowing ratios. This film cooling configuration is important because similar arrangements are frequently employed on the first stage of rotating blades of operating gas turbine engines. With this configuration, holes are spaced 6d apart in the spanwise direction, with inclination angles of 24 degrees, and angles of orientation of 50.5 degrees. Blowing ratios range from 1.5 to 4.0 and the ratio of injectant to freestream density is near 1.0. Results show that spanwise averaged adiabatic effectiveness, spanwise-averaged iso-energetic Stanton number ratios, surveys of streamwise mean velocity, and surveys of injectant distributions change by important amounts as the blowing ratio increases. This is due to injectant lift-off from the test surface just downstream of the holes.

Blow-out of nonpremixed turbulent jet flames at sub-atmospheric pressures

KAUST Repository

Wang, Qiang; Hu, Longhua; Chung, Suk-Ho

2016-01-01

Blow-out limits of nonpremixed turbulent jet flames in quiescent air at sub-atmospheric pressures (50–100 kPa) were studied experimentally using propane fuel with nozzle diameters ranging 0.8–4 mm. Results showed that the fuel jet velocity at blow-out limit increased with increasing ambient pressure and nozzle diameter. A Damköhler (Da) number based model was adopted, defined as the ratio of characteristic mixing time and characteristic reaction time, to include the effect of pressure considering the variations in laminar burning velocity and thermal diffusivity with pressure. The critical lift-off height at blow-out, representing a characteristic length scale for mixing, had a linear relationship with the theoretically predicted stoichiometric location along the jet axis, which had a weak dependence on ambient pressure. The characteristic mixing time (critical lift-off height divided by jet velocity) adjusted to the characteristic reaction time such that the critical Damköhler at blow-out conditions maintained a constant value when varying the ambient pressure.

Blow-out of nonpremixed turbulent jet flames at sub-atmospheric pressures

KAUST Repository

Wang, Qiang

2016-12-09

Blow-out limits of nonpremixed turbulent jet flames in quiescent air at sub-atmospheric pressures (50–100 kPa) were studied experimentally using propane fuel with nozzle diameters ranging 0.8–4 mm. Results showed that the fuel jet velocity at blow-out limit increased with increasing ambient pressure and nozzle diameter. A Damköhler (Da) number based model was adopted, defined as the ratio of characteristic mixing time and characteristic reaction time, to include the effect of pressure considering the variations in laminar burning velocity and thermal diffusivity with pressure. The critical lift-off height at blow-out, representing a characteristic length scale for mixing, had a linear relationship with the theoretically predicted stoichiometric location along the jet axis, which had a weak dependence on ambient pressure. The characteristic mixing time (critical lift-off height divided by jet velocity) adjusted to the characteristic reaction time such that the critical Damköhler at blow-out conditions maintained a constant value when varying the ambient pressure.

Numerical study of blow-up in the Davey-Stewartson system

KAUST Repository

Klein, Christian

2013-03-01

Nonlinear dispersive partial differential equations such as the nonlinear Schrödinger equations can have solutions that blow up. We numerically study the long time behavior and potential blow-up of solutions to the focusing Davey-Stewartson II equation by analyzing perturbations of the lump and the Ozawa solutions. It is shown in this way that both are unstable to blow-up and dispersion, and that blow-up in the Ozawa solution is generic.

Numerical study of blow-up in the Davey-Stewartson system

KAUST Repository

Klein, Christian; Muite, Benson; Roidot, Kristelle

2013-01-01

Nonlinear dispersive partial differential equations such as the nonlinear Schrödinger equations can have solutions that blow up. We numerically study the long time behavior and potential blow-up of solutions to the focusing Davey-Stewartson II equation by analyzing perturbations of the lump and the Ozawa solutions. It is shown in this way that both are unstable to blow-up and dispersion, and that blow-up in the Ozawa solution is generic.

INCOMPRESSIBLE LAMINAR BOUNDARY LAYER CONTROL BY BLOWING AND SUCTION

Directory of Open Access Journals (Sweden)

AZZEDINE NAHOUI

2013-12-01

Full Text Available A two-dimensional incompressible laminar boundary layer and its control using blowing and suction over a flat plate and around the NACA 0012 and 661012 profiles, is studied numerically. The study is based on the Prandtl boundary layer model using the finite differences method and the Crank-Nicolson scheme. The velocity distribution, the boundary layer thickness and the friction coefficient, are determined and presented with and without control. The application of the control technique, has demonstrated its positive effect on the transition point and the friction coefficient. Both control procedures are compared for different lengths, speeds and angles of blowing and suction.

Control rod blow out protection system

International Nuclear Information System (INIS)

Dietrich, J.R.; Flinn, W.S.; Groves, M.D.

1979-01-01

An absorber element blow-out protection system for a nuclear reactor having a pressure vessel through which a coolant is circulated. The blow-out protection system includes devices which hydraulically couple groups of guide tubes in which the absorber elements move, the coupling devices limiting coolant lift flow rate to a level commensurate with the raising of individual absorber elements but insufficient to raise a plurality of absorber elements simultaneously

Advanced Trailing Edge Blowing Concepts for Fan Noise Control

Directory of Open Access Journals (Sweden)

Cezar RIZEA

2012-03-01

Full Text Available This study documents trailing edge blowing research performed to reduce rotor / stator interaction noise in turbofan engines. The existing technique of filling every velocity deficit requires a large amount of air and is therefore impractical. The purpose of this research is to investigate new blowing configurations in order to achieve noise reduction with lesser amounts of air. Using the new configurations air is not injected into every fan blade, but is instead varied circumferentially. For example, blowing air may be applied to alternating fan blades. This type of blowing configuration both reduces the amount of air used and changes the spectral shape of the tonal interaction noise. The original tones at the blade passing frequency and its harmonics are reduced and new tones are introduced between them. This change in the tonal spectral shape increases the performance of acoustic liners used in conjunction with trailing edge blowing.

Blowing snow sublimation and transport over Antarctica from 11 years of CALIPSO observations

Directory of Open Access Journals (Sweden)

S. P. Palm

2017-11-01

Full Text Available Blowing snow processes commonly occur over the earth's ice sheets when the 10 m wind speed exceeds a threshold value. These processes play a key role in the sublimation and redistribution of snow thereby influencing the surface mass balance. Prior field studies and modeling results have shown the importance of blowing snow sublimation and transport on the surface mass budget and hydrological cycle of high-latitude regions. For the first time, we present continent-wide estimates of blowing snow sublimation and transport over Antarctica for the period 2006–2016 based on direct observation of blowing snow events. We use an improved version of the blowing snow detection algorithm developed for previous work that uses atmospheric backscatter measurements obtained from the CALIOP (Cloud-Aerosol Lidar with Orthogonal Polarization lidar aboard the CALIPSO (Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation satellite. The blowing snow events identified by CALIPSO and meteorological fields from MERRA-2 are used to compute the blowing snow sublimation and transport rates. Our results show that maximum sublimation occurs along and slightly inland of the coastline. This is contrary to the observed maximum blowing snow frequency which occurs over the interior. The associated temperature and moisture reanalysis fields likely contribute to the spatial distribution of the maximum sublimation values. However, the spatial pattern of the sublimation rate over Antarctica is consistent with modeling studies and precipitation estimates. Overall, our results show that the 2006–2016 Antarctica average integrated blowing snow sublimation is about 393 ± 196 Gt yr−1, which is considerably larger than previous model-derived estimates. We find maximum blowing snow transport amount of 5 Mt km−1 yr−1 over parts of East Antarctica and estimate that the average snow transport from continent to ocean is about 3.7 Gt yr−1. These

Blow-Up Time for Nonlinear Heat Equations with Transcendental Nonlinearity

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Hee Chul Pak

2012-01-01

Full Text Available A blow-up time for nonlinear heat equations with transcendental nonlinearity is investigated. An upper bound of the first blow-up time is presented. It is pointed out that the upper bound of the first blow-up time depends on the support of the initial datum.

Effects of free-stream turbulence intensity and blowing ratio on film cooling of turbine blade leading edge

International Nuclear Information System (INIS)

Kim, S. M.; Kim, Youn J.; Cho, H. H.

2001-01-01

We used a cylindrical model which simulates turbine blade leading edge to investigate the effects of free-stream turbulence intensity and blowing ratio on film cooling of turbine blade leading edge. Tests are carried out in a low-speed wind tunnel on a cylindrical model with three rows of injection holes. Mainstream Reynolds number based on the cylinder diameter was 7.1x10 4 . Two types of turbulence grid are used to increase a free-stream turbulence intensity. The effect of coolant blowing ratio was studied for various blowing ratios. For each blowing ratios, wall temperatures around the surface of the test model are measured by thermocouples installed inside the model. Results show that blowing ratios have small effect on spanwise-averaged film effectiveness at high free-stream turbulence intensity. However, an increase in free-stream turbulence intensity enhances significantly spanwise-averaged film effectiveness at low blowing ratio

Methyl Iodide Decomposition at BWR Conditions

International Nuclear Information System (INIS)

Pop, Mike; Bell, Merl

2012-09-01

Based on favourable results from short-term testing of methanol addition to an operating BWR plant, AREVA has performed numerous studies in support of necessary Engineering and Plant Safety Evaluations prior to extended injection of methanol. The current paper presents data from a study intended to provide further understanding of the decomposition of methyl iodide as it affects the assessment of methyl iodide formation with the application of methanol at BWR Plants. This paper describes the results of the decomposition testing under UV-C light at laboratory conditions and its effect on the subject methyl iodide production evaluation. The study as to the formation and decomposition of methyl iodide as it is effected by methanol addition is one phase of a larger AREVA effort to provide a generic plant Safety Evaluation prior to long-term methanol injection to an operating BWR. Other testing phases have investigated the compatibility of methanol with fuel construction materials, plant structural materials, plant consumable materials (i.e. elastomers and coatings), and ion exchange resins. Methyl iodide is known to be very unstable, typically preserved with copper metal or other stabilizing materials when produced and stored. It is even more unstable when exposed to light, heat, radiation, and water. Additionally, it is known that methyl iodide will decompose radiolytically, and that this effect may be simulated using ultra-violet radiation (UV-C) [2]. In the tests described in this paper, the use of a UV-C light source provides activation energy for the formation of methyl iodide. Thus is similar to the effect expected from Cherenkov radiation present in a reactor core after shutdown. Based on the testing described in this paper, it is concluded that injection of methanol at concentrations below 2.5 ppm in BWR applications to mitigate IGSCC of internals is inconsequential to the accident conditions postulated in the FSAR as they are related to methyl iodide formation

Blow Flies Visiting Decaying Alligators: Is Succession Synchronous or Asynchronous?

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Mark P. Nelder

2009-01-01

Full Text Available Succession patterns of adult blow flies (Diptera: Calliphoridae on decaying alligators were investigated in Mobile (Ala, USA during August 2002. The most abundant blow fly species visiting the carcasses were Chrysomya rufifacies (Macquart, Cochliomyia macellaria (Fabricus, Chrysomya megacephala (Fabricus, Phormia regina (Meigen, and Lucilia coeruleiviridis (Macquart. Lucilia coeruleiviridis was collected more often during the early stages of decomposition, followed by Chrysomya spp., Cochliomyia macellaria, and Phormia regina in the later stages. Lucilia coeruleiviridis was the only synchronous blow fly on the three carcasses; other blow fly species exhibited only site-specific synchrony. Using dichotomous correlations and analyses of variance, we demonstrated that blow fly-community succession was asynchronous among three alligators; however, Monte Carlo simulations indicate that there was some degree of synchrony between the carcasses.

Blow fly maggots (Diptera: Calliphoridae)from a human corpse in a vehicle.

Science.gov (United States)

Sribanditmongkol, Pongruk; Monum, Tawachai; Wannasan, Anchalee; Tomberlin, Jeffery K; Sukontason, Kom; Sukontason, Kabkaew L

2014-09-01

Correct species identification and development data of insects associated with a cadaver can help estimate the time of colonization which could be used to infer a minimal post-mortem interval (minPMI) for forensic investigations. Human remains are found in a variety of locations ranging from open fields to inside automobiles. We report the investigation of blow fly larvae collected from a decomposing body located in the trunk of a car. There were two blow fly (Diptera: Calliphoridae) species: Achoetandrus rufifacies (Macquart) and Chrysomya megacephala (Fabricius). Blow flies can enter the vehicle and colonize human remains. Based on age estimations of third stage larvae of A. rufifacies, the minPMI was estimated to be 4-5 days, which was within the range of 3-5 days estimated by other forensically relevant information.

THIRD-GENERATION FOAM BLOWING AGENTS FOR FOAM INSULATION

Science.gov (United States)

The report gives results of a study of third-generation blowing agents for foam insulation. (NOTE: the search for third-generation foam blowing agents has led to the realization that, as the number of potential substitutes increases, new concerns, such as their potential to act a...

Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers.

Science.gov (United States)

Cervera, M T; Ruiz-García, L; Martínez-Zapater, J M

2002-12-01

AFLP analysis using restriction enzyme isoschizomers that differ in their sensitivity to methylation of their recognition sites has been used to analyse the methylation state of anonymous CCGG sequences in Arabidopsis thaliana. The technique was modified to improve the quality of fingerprints and to visualise larger numbers of scorable fragments. Sequencing of amplified fragments indicated that detection was generally associated with non-methylation of the cytosine to which the isoschizomer is sensitive. Comparison of EcoRI/ HpaII and EcoRI/ MspI patterns in different ecotypes revealed that 35-43% of CCGG sites were differentially digested by the isoschizomers. Interestingly, the pattern of digestion among different plants belonging to the same ecotype is highly conserved, with the rate of intra-ecotype methylation-sensitive polymorphisms being less than 1%. However, pairwise comparisons of methylation patterns between samples belonging to different ecotypes revealed differences in up to 34% of the methylation-sensitive polymorphisms. The lack of correlation between inter-ecotype similarity matrices based on methylation-insensitive or methylation-sensitive polymorphisms suggests that whatever the mechanisms regulating methylation may be, they are not related to nucleotide sequence variation.

Simulation of the Two Stages Stretch-Blow Molding Process: Infrared Heating and Blowing Modeling

International Nuclear Information System (INIS)

Bordival, M.; Schmidt, F. M.; Le Maoult, Y.; Velay, V.

2007-01-01

In the Stretch-Blow Molding (SBM) process, the temperature distribution of the reheated perform affects drastically the blowing kinematic, the bottle thickness distribution, as well as the orientation induced by stretching. Consequently, mechanical and optical properties of the final bottle are closely related to heating conditions. In order to predict the 3D temperature distribution of a rotating preform, numerical software using control-volume method has been developed. Since PET behaves like a semi-transparent medium, the radiative flux absorption was computed using Beer Lambert law. In a second step, 2D axi-symmetric simulations of the SBM have been developed using the finite element package ABAQUS registered . Temperature profiles through the preform wall thickness and along its length were computed and applied as initial condition. Air pressure inside the preform was not considered as an input variable, but was automatically computed using a thermodynamic model. The heat transfer coefficient applied between the mold and the polymer was also measured. Finally, the G'sell law was used for modeling PET behavior. For both heating and blowing stage simulations, a good agreement has been observed with experimental measurements. This work is part of the European project ''APT P ACK'' (Advanced knowledge of Polymer deformation for Tomorrow's PACKaging)

Simulation of the Two Stages Stretch-Blow Molding Process: Infrared Heating and Blowing Modeling

Science.gov (United States)

Bordival, M.; Schmidt, F. M.; Le Maoult, Y.; Velay, V.

2007-05-01

In the Stretch-Blow Molding (SBM) process, the temperature distribution of the reheated perform affects drastically the blowing kinematic, the bottle thickness distribution, as well as the orientation induced by stretching. Consequently, mechanical and optical properties of the final bottle are closely related to heating conditions. In order to predict the 3D temperature distribution of a rotating preform, numerical software using control-volume method has been developed. Since PET behaves like a semi-transparent medium, the radiative flux absorption was computed using Beer Lambert law. In a second step, 2D axi-symmetric simulations of the SBM have been developed using the finite element package ABAQUS®. Temperature profiles through the preform wall thickness and along its length were computed and applied as initial condition. Air pressure inside the preform was not considered as an input variable, but was automatically computed using a thermodynamic model. The heat transfer coefficient applied between the mold and the polymer was also measured. Finally, the G'sell law was used for modeling PET behavior. For both heating and blowing stage simulations, a good agreement has been observed with experimental measurements. This work is part of the European project "APT_PACK" (Advanced knowledge of Polymer deformation for Tomorrow's PACKaging).

RESEARCH ON THE INFLUENCE OF BLOWING AGENT ON SELECTED PROPERTIES OF EXTRUDED CELLULAR PRODUCTS

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Tomasz Garbacz

2015-11-01

Full Text Available As a part of a more comprehensive research project, the present study was undertaken to investigate the effect of the type and content of blowing agents in the polymeric materials being processed on the structure and selected physical and mechanical properties of the obtained extrusion parts. In the experiment, the content of the blowing agent (0–2.0% by mass, fed into the processed polymer were adopted as a variable factor. In the studies presented in the article, the blowing agents of endothermic decomposition characteristics (Hydrocerol BIH 70, Hydrocerol BM 70 and the exothermic decomposition characteristics (PLC 751 occurring in the granulated form with a diameter of 1.2 to 1.8 mm were used. Based on the results of investigating porosity, porous structure image analysis as well as microscopic examination of the structure, it has been found that the favorable content of the blowing agent in the polymeric material should be of up to 0.8% by mass. With such a content of the blowing agent in the polymeric material, favorable strength properties are retained in porous parts, the pore distribution is uniform and the pores have similar sizes.

Secondary organic aerosol formation and composition from the photo-oxidation of methyl chavicol (estragole)

Science.gov (United States)

Pereira, K. L.; Hamilton, J. F.; Rickard, A. R.; Bloss, W. J.; Alam, M. S.; Camredon, M.; Muñoz, A.; Vázquez, M.; Borrás, E.; Ródenas, M.

2014-06-01

The increasing demand for palm oil for uses in biofuel and food products is leading to rapid expansion of oil palm agriculture. Methyl chavicol (also known as estragole and 1-allyl-4-methoxybenzene) is an oxygenated biogenic volatile organic compound (VOC) that was recently identified as the main floral emission from an oil palm plantation in Malaysian Borneo. The emissions of methyl chavicol observed may impact regional atmospheric chemistry, but little is known of its ability to form secondary organic aerosol (SOA). The photo-oxidation of methyl chavicol was investigated at the European Photoreactor chamber as a part of the atmospheric chemistry of methyl chavicol (ATMECH) project. Aerosol samples were collected using a particle into liquid sampler (PILS) and analysed offline using an extensive range of instruments including; high-performance liquid chromatography mass spectrometry (HPLC-ITMS), high-performance liquid chromatography quadrupole time-of-flight mass spectrometry (HPLC-QTOFMS) and Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). The SOA yield was determined as 18 and 29% for an initial VOC mixing ratio of 212 and 460 ppbv (parts per billion by volume) respectively; using a VOC:NOx ratio of ~5:1. In total, 59 SOA compounds were observed and the structures of 10 compounds have been identified using high-resolution tandem mass spectrometry. The addition of hydroxyl and/or nitro-functional groups to the aromatic ring appears to be an important mechanistic pathway for aerosol formation. This results in the formation of compounds with both low volatility and high O:C ratios, where functionalisation rather than fragmentation is mainly observed as a result of the stability of the ring. The SOA species observed can be characterised as semi-volatile to low-volatility oxygenated organic aerosol (SVOOA and LVOOA) components and therefore may be important in aerosol formation and growth.

An electrostatic charge measurement of blowing snow particles focusing on collision frequency to the snow surface

Science.gov (United States)

Omiya, S.; Sato, A.

2010-12-01

Blowing snow particles are known to have an electrostatic charge. This charge may be a contributing factor in the formation of snow drifts and snow cornices and changing of the trajectory of blowing snow particles. These formations and phenomena can cause natural disaster such as an avalanche and a visibility deterioration, and obstruct transportation during winter season. Therefore, charging phenomenon of the blowing snow particles is an important issue in terms of not only precise understanding of the particle motion but disaster prevention. The primary factor of charge accumulation to the blowing snow particles is thought to be due to “saltation” of them. The “saltation” is one of movement forms of blowing snow: when the snow particles are transported by the wind, they repeat frictional collisions with the snow surface. In previous studies, charge-to-mass ratios measured in the field were approximately -50 to -10 μC/kg, and in the wind tunnel were approximately -0.8 to -0.1 μC/kg. While there were qualitatively consistent in sign, negative, there were huge gaps quantitatively between them. One reason of those gaps is speculated to be due to differences in fetch. In other words, the difference of the collision frequency of snow particles to the snow surface has caused the gaps. But it is merely a suggestion and that has not been confirmed. The purpose of this experiment is to measure the charge of blowing snow particles focusing on the collision frequency and clarify the relationship between them. Experiments were carried out in the cryogenic wind tunnel of Snow and Ice Research Center (NIED, JAPAN). A Faraday cage and an electrometer were used to measure the charge of snow particles. These experiments were conducted over the hard snow surface condition to prevent the erosion of the snow surface and the generation of new snow particles from the surface. The collision frequency of particle was controlled by changing the wind velocity (4.5 to 7 m/s) under

Droplet-born air blowing: novel dissolving microneedle fabrication.

Science.gov (United States)

Kim, Jung Dong; Kim, Miroo; Yang, Huisuk; Lee, Kwang; Jung, Hyungil

2013-09-28

The microneedle-mediated drug delivery system has been developed to provide painless self-administration of drugs in a patient-friendly manner. Current dissolving microneedle fabrication methods, however, require harsh conditions for biological drugs and also have problems standardizing the drug dose. Here, we suggested the droplet-born air blowing (DAB) method, which provides gentle (4-25 °C) and fast (≤10min) microneedle fabrication conditions without drug loss. The amount of drug in the microneedle can be controlled by the pressure and time of droplet dispenser and the air blowing shapes this droplet to the microneedle, providing a force sufficient to penetrate skin. Also, the introduction of a base structure of two layered DAB-microneedle could provide complete drug delivery without wasting of drug. The DAB-based insulin loaded microneedle shows similar bioavailability (96.6±2.4%) and down regulation of glucose level compared with subcutaneous injection. We anticipate that DAB described herein will be suitable to design dissolving microneedles for use in biological drug delivery to patients. Copyright © 2013 Elsevier B.V. All rights reserved.

Employee perceptions regarding whistle-blowing in the workplace: A South African perspective

Directory of Open Access Journals (Sweden)

Sandra Perks

2008-11-01

Full Text Available The purpose of whistle-blowing is to eradicate unethical behaviour in the work place. This article investigates the perceptions of South African employees (n=387 employed in medium and large organisations regarding whistle-blowing. Respondents regard personal viewpoints and the supportive organisational environment as determining factors for whistle-blowing. South African employees have faced minimal negative consequences and will again engage in whistle-blowing, regardless of union support. Organisations can create a whistle-blowing culture by having a personal code of ethics, using hotlines, having an ethical committee, engaging in periodic ethics training and doing an annual ethical audit.

Millimeter Wave Spectrum of the Two Monosulfur Derivatives of Methyl Formate: s- and O-Methyl Thioformate, in the Ground and the First Excited Torsional States

Science.gov (United States)

Jabri, Atef; Motiyenko, R. A.; Margulès, L.; Guillemin, J.-C.; Alekseev, E. A.; Kleiner, Isabelle; Tercero, Belén; Cernicharo, Jose

2017-06-01

Methyl formate CH_{3}OC(O)H is a relatively abundant component of the interstellar medium (ISM). Thus, we decided to study its sulfur derivatives as they can be reasonably proposed for detection in the ISM. In fact there is two relatively stable isomers for methyl thioformate, S-Methyl thioformate CH_{3}SC(O)H and O-Methyl thiofomate CH_{3}OC(S)H. Theoretical investigations on these molecules have been done recently by Senent et al.. Previous experimental investigations were performed only for the S-Methyl thioformate in the 10-41 GHz spectral range by Jones et al. and Caminati et al.. For the present study both isomers were synthesized and the millimeter wave spectrum was then recorded for the first time from 150 to 660 GHz with the Lille's spectrometer based on solid-state sources. The internal rotation effect on the millimeter wave spectra is not the same for these two molecules because the barrier height to internal rotation is relatively low for the S- isomer (V_{3} ≈ 140 \\wn) and rather high for the O- isomer (V_{3} ≈ 700 \\wn). Analysis of the ground and excited torsional states performed with the BELGI-C_{s} code will be presented and discussed. We will provide the search for methyl thioformate in different sources. E. Chruchwell, G. Winnewisser, A&A, 45, 229 (1975) M. L. Senent, C. Puzzarini, M. Hochlaf, R. Dominguez-Gomez, and M. Carvajal, J. Chem. Phys., 141, 104303 (2014) G. I. L. Jones, D. G. Lister, N. L. Owen, J. Mol. Spectrosc., 60, 348 (1976) W. Caminati, B. P. V. Eijck, D. G. Lister, J. Mol. Spectrosc., 90, 15 (1981) J. T. Hougen, I. Kleiner, and M. Godefroid, J. Mol. Spectrosc. 163, 559 (1994)

Polypropylenes foam consisting of thermally expandable microcapsule as blowing agent

Science.gov (United States)

Jeoung, Sun Kyung; Hwang, Ye Jin; Lee, Hyun Wook; Kwak, Sung Bok; Han, In-Soo; Ha, Jin Uk

2016-03-01

The structure of thermally expandable microcapsule (TEMs) is consisted of a thermoplastic shell which is filled with liquid hydrocarbon at core. The shell of TEMs becomes soft when the temperature is higher than boiling temperature of liquid hydrocarbon. The shell of TEMs is expanded under the high temperature because the inner pressure of TEMs is increased by vaporization of hydrocarbon core. Therefore, the TEMs are applicable for blowing agents and light weight fillers. In this research, we fabricated the polypropylene (PP) foam by using the TEMs and chemical blowing agents and compared to their physical properties. The density of the specimen was decreased when the contents of chemical blowing agents and TEMs were increased. In addition, the mechanical properties (i.e. tensile strength and impact strength) of specimens were deteriorated with increasing amount of chemical blowing agents and TEMs. However, PP foam produced with TEMs showed higher impact strength than the one with the chemical blowing agent. In order to clarify the dependence of impact strength of PP foam as the blowing agent, the morphology difference of the PP foams was investigated. Expanding properties of PP foams produced with TEMs was changed with TEMs content of PP foams. Processing conditions also influenced the mechanical properties of PP foam containing TEMs.

MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data.

Science.gov (United States)

Kilaru, Varun; Barfield, Richard T; Schroeder, James W; Smith, Alicia K; Conneely, Karen N

2012-03-01

Recent evidence suggests that DNA methylation changes may underlie numerous complex traits and diseases. The advent of commercial, array-based methods to interrogate DNA methylation has led to a profusion of epigenetic studies in the literature. Array-based methods, such as the popular Illumina GoldenGate and Infinium platforms, estimate the proportion of DNA methylated at single-base resolution for thousands of CpG sites across the genome. These arrays generate enormous amounts of data, but few software resources exist for efficient and flexible analysis of these data. We developed a software package called MethLAB (http://genetics.emory.edu/conneely/MethLAB) using R, an open source statistical language that can be edited to suit the needs of the user. MethLAB features a graphical user interface (GUI) with a menu-driven format designed to efficiently read in and manipulate array-based methylation data in a user-friendly manner. MethLAB tests for association between methylation and relevant phenotypes by fitting a separate linear model for each CpG site. These models can incorporate both continuous and categorical phenotypes and covariates, as well as fixed or random batch or chip effects. MethLAB accounts for multiple testing by controlling the false discovery rate (FDR) at a user-specified level. Standard output includes a spreadsheet-ready text file and an array of publication-quality figures. Considering the growing interest in and availability of DNA methylation data, there is a great need for user-friendly open source analytical tools. With MethLAB, we present a timely resource that will allow users with no programming experience to implement flexible and powerful analyses of DNA methylation data.

Synthesis of a novel adaptive wavelet optimized neural cascaded steam blow-off control system for a nuclear power plant

International Nuclear Information System (INIS)

Malik, A.H.; Memon, A.A.; Arshad, F.

2013-01-01

Blow-Off System Controller (MIMO AWNN-SBOSC) is designed based on real time dynamic parametric plant data of steam blow-off system with conventional Single-Input Multi-Output Proportional plus Integral plus Derivative Controller (SIMO PIDC). The proposed MIMO AWANN-SBOSC is designed using three Multi-Input Single-Output Adaptive Wavelet Neural Network based Steam Blow-Off System Controllers (MISO AWNN-SBOSC). The hidden layer of each MISO AWNN-SBOSC is formulated using Mother Wavelet Transforms (MWT). Using nonlinear dynamic neural data of designed MIMO AWNN-SBOSC, a Multi-Input Multi-Output Adaptive Wavelet Neural Network based Steam Blow-Off System Model (MIMO AWNN-SBOSM) is developed in cascaded mode. MIMO AWNN-SBOSM is designed using two MISO AWNN-SBOSM. All training, testing and validation of MIMO AWNN-SBOSC and MIMO AWNN-SBOSM are carried out in MA TLAB while all simulation experiments are performed in Visual C. The results of the new design is evaluated against conventional controller based measured data and found robust, fast and much better in performance. (author)

Molecular identification of blow flies recovered from human cadavers during crime scene investigations in Malaysia.

Science.gov (United States)

Kavitha, Rajagopal; Nazni, Wasi Ahmad; Tan, Tian Chye; Lee, Han Lim; Isa, Mohd Noor Mat; Azirun, Mohd Sofian

2012-12-01

Forensic entomology applies knowledge about insects associated with decedent in crime scene investigation. It is possible to calculate a minimum postmortem interval (PMI) by determining the age and species of the oldest blow fly larvae feeding on decedent. This study was conducted in Malaysia to identify maggot specimens collected during crime scene investigations. The usefulness of the molecular and morphological approach in species identifications was evaluated in 10 morphologically identified blow fly larvae sampled from 10 different crime scenes in Malaysia. The molecular identification method involved the sequencing of a total length of 2.2 kilo base pairs encompassing the 'barcode' fragments of the mitochondrial cytochrome oxidase I (COI), cytochrome oxidase II (COII) and t-RNA leucine genes. Phylogenetic analyses confirmed the presence of Chrysomya megacephala, Chrysomya rufifacies and Chrysomya nigripes. In addition, one unidentified blow fly species was found based on phylogenetic tree analysis.

Methanogenesis from acetate by Methanosarcina barkeri: Catalysis of acetate formation from methyl iodide, CO/sub 2/, and H/sub 2/ by the enzyme system involved

Energy Technology Data Exchange (ETDEWEB)

Laufer, K; Eikmanns, B; Frimmer, U; Thauer, R K

1987-04-01

Cell suspensions of Methanosarcina barkeri grown on acetate catalyze the formation of methane and CO/sub 2/ from acetate as well as an isotopic exchange between the carboxyl group of acetate and CO/sub 2/. Here we report that these cells also mediate the synthesis of acetate from methyl iodide, CO/sub 2/, and reducing equivalents (H/sub 2/ or CO), the methyl group of acetate being derived from methyl iodide and the carboxyl group from CO/sub 2/. Methyl chloride and methyltosylate but not methanol can substitute for methyl iodide in this reaction. Acetate formation from methyl iodide, CO/sub 2/, and reducing equivalents is coupled with the phosphorylation of ADP. Evidence is presented that methyl iodide is incorporated into the methyl group of acetate via a methyl corrinoid intermediate (deduced from inhibition experiments with propyl iodide) and that CO/sub 2/ is assimilated into the carboxyl group via a C/sub 1/ intermediate which does not exchange with free formate or free CO. The effects of protonophores, of the proton-translocating ATPase inhibitor N,N'-dicyclohexylcarbodiimide, and of arsenate on acetate formation are interpreted to indicate that the reduction of CO/sub 2/ to the oxidation level of the carboxyl group of acetate requires the presence of an electrochemical proton potential and that acetyl-CoA or acetyl-phosphate rather than free acetate is the immediate product of the condensation reaction. These results are dicsussed with respect to the mechanism of methanogenesis from acetate.

Development and implementation of Intelligent Soot Blowing Optimization System for TNB Janamanjung

Directory of Open Access Journals (Sweden)

Sundaram Taneshwaren

2017-01-01

Full Text Available With an ever increasing demand for energy, Malaysia has become a nation that thrives on solid power generation sector to meet the energy demand and supply market. In a coal fired power plant, soot blowing operation is commonly used as a cleaning mechanism inside the boiler. There are many types of sequence available for this soot blowing operation. Hence, there is no efficient ways in utilizing the soot blowing operation to enhance the efficiency of boiler. Soot blowing optimization requires specific set of data preparation and simulation in order to achieve the best modal. Computational Fluid Dynamics (CFD is used to model a 700MW super-critical boiler, whereby parameters with effect to soot blowing operation is studied. Two different boiler condition is studied to analyze parameters in a clean and faulty boiler. Artificial Neural Network (ANN is used to train neural network modal with back propagation method to determine the best modal that will be used to predict soot blowing operation. Combination of neural network different number of neurons, hidden layers, training algorithm, and training functions is trained to find the modal with lowest error. By improving soot blowing sequence, efficiency of boiler can be improved by providing best parameter and model. This model is then used as a reference for advisory tool whereby a Neural Network Predictive Tool is suggested to the station to predict the soot blowing operation that occurs.

Controlled Transverse Blow-up of Highenergy Proton Beams for Aperture Measurements and Loss Maps

CERN Document Server

Hӧfle, W; Redaelli, S; Schmidt, R; Valuch, D; Wollmann, D; Zerlauth, M

2012-01-01

A technique was developed to blow-up transversely in a controlled way high energy proton beams in the LHC. The technique is based on band limited white noise excitation that is injected into the transverse damper feedback loop. The injected signal can be gated to selectively blow-up individual trains of bunches. The speed of transverse blow-up can be precisely controlled. This opens the possibility to perform safely and efficiently aperture measurements and loss maps with high intensity bunch trains well above stored beam energies that are considered to be safe. In particular, lengthy procedures for measurements at top energy, otherwise requiring multiple fills of individual bunches, can be avoided. In this paper, the method is presented and results from beam measurements are discussed and compared with alternative blowup methods.

Helical instability in film blowing process: Analogy to buckling instability

Science.gov (United States)

Lee, Joo Sung; Kwon, Ilyoung; Jung, Hyun Wook; Hyun, Jae Chun

2017-12-01

The film blowing process is one of the most important polymer processing operations, widely used for producing bi-axially oriented film products in a single-step process. Among the instabilities observed in this film blowing process, i.e., draw resonance and helical motion occurring on the inflated film bubble, the helical instability is a unique phenomenon portraying the snake-like undulation motion of the bubble, having the period on the order of few seconds. This helical instability in the film blowing process is commonly found at the process conditions of a high blow-up ratio with too low a freezeline position and/or too high extrusion temperature. In this study, employing an analogy to the buckling instability for falling viscous threads, the compressive force caused by the pressure difference between inside and outside of the film bubble is introduced into the simulation model along with the scaling law derived from the force balance between viscous force and centripetal force of the film bubble. The simulation using this model reveals a close agreement with the experimental results of the film blowing process of polyethylene polymers such as low density polyethylene and linear low density polyethylene.

Methyl-Analyzer--whole genome DNA methylation profiling.

Science.gov (United States)

Xin, Yurong; Ge, Yongchao; Haghighi, Fatemeh G

2011-08-15

Methyl-Analyzer is a python package that analyzes genome-wide DNA methylation data produced by the Methyl-MAPS (methylation mapping analysis by paired-end sequencing) method. Methyl-MAPS is an enzymatic-based method that uses both methylation-sensitive and -dependent enzymes covering >80% of CpG dinucleotides within mammalian genomes. It combines enzymatic-based approaches with high-throughput next-generation sequencing technology to provide whole genome DNA methylation profiles. Methyl-Analyzer processes and integrates sequencing reads from methylated and unmethylated compartments and estimates CpG methylation probabilities at single base resolution. Methyl-Analyzer is available at http://github.com/epigenomics/methylmaps. Sample dataset is available for download at http://epigenomicspub.columbia.edu/methylanalyzer_data.html. fgh3@columbia.edu Supplementary data are available at Bioinformatics online.

New Perspectives on Blowing Snow Transport, Sublimation, and Layer Thermodynamic Structure over Antarctica

Science.gov (United States)

Palm, Steve; Kayetha, Vinay; Yang, Yuekui; Pauly, Rebecca M.

2017-01-01

Blowing snow over Antarctica is a widespread and frequent event. Satellite remote sensing using lidar has shown that blowing snow occurs over 70% of the time over large areas of Antarctica in winter. The transport and sublimation of blowing snow are important terms in the ice sheet mass balance equation and the latter is also an important part of the hydrological cycle. Until now the only way to estimate the magnitude of these processes was through model parameterization. We present a technique that uses direct satellite observations of blowing snow and model (MERRA-2) temperature and humidity fields to compute both transport and sublimation of blowing snow over Antarctica for the period 2006 to 2016. The results show a larger annual continent-wide integrated sublimation than current published estimates and a significant transport of snow from continent to ocean. The talk will also include the lidar backscatter structure of blowing snow layers that often reach heights of 200 to 300 m as well as the first dropsonde measurements of temperature, moisture and wind through blowing snow layers.

Some blow-up problems for a semilinear parabolic equation with a potential

Science.gov (United States)

Cheng, Ting; Zheng, Gao-Feng

The blow-up rate estimate for the solution to a semilinear parabolic equation u=Δu+V(x)|u in Ω×(0,T) with 0-Dirichlet boundary condition is obtained. As an application, it is shown that the asymptotic behavior of blow-up time and blow-up set of the problem with nonnegative initial data u(x,0)=Mφ(x) as M goes to infinity, which have been found in [C. Cortazar, M. Elgueta, J.D. Rossi, The blow-up problem for a semilinear parabolic equation with a potential, preprint, arXiv: math.AP/0607055, July 2006], is improved under some reasonable and weaker conditions compared with [C. Cortazar, M. Elgueta, J.D. Rossi, The blow-up problem for a semilinear parabolic equation with a potential, preprint, arXiv: math.AP/0607055, July 2006].

The investigation of lithium formate hydrate, sodium dithionate and N-methyl taurine as clinical EPR dosimeters

International Nuclear Information System (INIS)

Lelie, S.; Hole, E.O.; Duchateau, M.; Schroeyers, W.; Schreurs, S.; Verellen, D.

2013-01-01

Introduction: EPR-dosimetry using L-α-alanine is an established method for measuring high doses of ionizing radiation. However, since a minimum dose of approximately 4 Gy is required to achieve sufficient low uncertainties (1–2%) for clinical application, alternative dosimeter materials are being inquired. Lithium formate (LiFo) monohydrate has been studied by several groups and has revealed several promising properties in the low dose region (<4 Gy). The fading properties, however, are somewhat unpredictable, and depend on properties not yet fully uncovered. This paper reports the results from a study of lithium formate hydrate and N-methyl taurine as potential low dose EPR dosimeters. Methods and materials: Pellet shaped dosimeters of lithium formate monohydrate, lithium formate hydrate, sodium dithionate and N-methyl taurine were produced using a manual Weber press, L-α-alanine was obtained from Harwell dosimeters and irradiated using 60 kV and 6 MV X-ray beams, and Co-60 gamma-rays to a dose of 30 Gy and dose ranges of 0.5–100 Gy and 2–20 Gy respectively. The dosimeters were measured using an Electron Paramagnetic Resonance (EPR)-spectrometer. The detector responses for 6 MV and Co-60 radiation beams, the fading behaviors and signal shape in time were investigated. Results: Lithium formate monohydrate and lithium formate hydrate are apparently associated with near identical EPR-spectra (mainly one broad line), and the same spectrum arises for all radiation energies investigated. The shape of the EPR resonance remains constant with time, but the intensities decreases, and the fading is more prominent for the monohydrate than for the hydrate. The EPR resonance associated with N-methyl taurine is more complex than the resonance associated with LiFo and it changes with time, implying radical transitions and growth. Conclusions: The study showed that lithium formate hydrate is a strong candidate for EPR dosimetry with slightly better fading characteristics

Origins of transverse emittance blow-up during the LHC energy tramp

CERN Document Server

Kuhn, M; Arduini, G; Kain, V; Schaumann, M; Tomas, R

2014-01-01

During LHC Run 1 about 30 % of the potential peak performance was lost due to transverse emittance blow-up through the LHC cycle. Measurements indicated that the majority of the blow-up occurred during the energy ramp. Until the end of LHC Run 1 this emittance blow-up could not be eliminated. In this paper the measurements and observations of emittance growth through the ramp are summarized. Simulation results for growth due to Intra Beam Scattering will be shown and compared to measurements. A summary of investigations of other possible sources will be given and backed up with simulations where possible. Requirements for commissioning the LHC with beam in 2015 after Long Shutdown 1 to understand and control emittance blow-up will be listed.

Blow-up in nonlinear Schroedinger equations. II. Similarity structure of the blow-up singularity

DEFF Research Database (Denmark)

Rypdal, K.; Juul Rasmussen, Jens

1986-01-01

invariance and generalizations of the latter. This generalized "quasi-invariance" reveals the nature of the blow-up singularity and resolves an old controversy. Most of the previous work has been done on the cubic nonlinearity. We generalize the results to an arbitrary power nonlinearity....

Religiosity, Job Status and Whistle-Blowing: Evidence from Micro-Finance Companies

Directory of Open Access Journals (Sweden)

Emmanuel Selase Asamoah

2016-03-01

Full Text Available We investigate the effect of religiosity and job status on whistle-blowing among employees of micro finance companies in Ga-East district of Ghana. The intellectual dimension of religiosity informs and produces high sense of morality in an individual thus influencing whistle-blowing. Additionally, religion create the platform for building belief in certain rules and regulations as right or as wrong. Using quantitative approach for analyzing the effect between independent variables (job status and religiosity on the dependent variable (whistle-blowing, we show that though religiosity and job status can influence whistle-blowing, however in this study, the magnitude is negligible and perhaps other variables in concert with religiosity and job status may influence whistle-blowing activities in an organization. We conclude that that whistleblowing generally in the Ghanaian setting is yet to receive high prominence due to the general belief of lack of protection for persons who come out to expose wrongdoings and the general fear of harassment, victimization and loss of job by the whistle-blower.

Case-control study of candidate gene methylation and adenomatous polyp formation.

Science.gov (United States)

Alexander, M; Burch, J B; Steck, S E; Chen, C-F; Hurley, T G; Cavicchia, P; Shivappa, N; Guess, J; Zhang, H; Youngstedt, S D; Creek, K E; Lloyd, S; Jones, K; Hébert, J R

2017-02-01

Colorectal cancer (CRC) is one of the most common and preventable forms of cancer but remains the second leading cause of cancer-related death. Colorectal adenomas are precursor lesions that develop in 70-90 % of CRC cases. Identification of peripheral biomarkers for adenomas would help to enhance screening efforts. This exploratory study examined the methylation status of 20 candidate markers in peripheral blood leukocytes and their association with adenoma formation. Patients recruited from a local endoscopy clinic provided informed consent and completed an interview to ascertain demographic, lifestyle, and adenoma risk factors. Cases were individuals with a histopathologically confirmed adenoma, and controls included patients with a normal colonoscopy or those with histopathological findings not requiring heightened surveillance (normal biopsy, hyperplastic polyp). Methylation-specific polymerase chain reaction was used to characterize candidate gene promoter methylation. Odds ratios (ORs) and 95 % confidence intervals (95% CIs) were calculated using unconditional multivariable logistic regression to test the hypothesis that candidate gene methylation differed between cases and controls, after adjustment for confounders. Complete data were available for 107 participants; 36 % had adenomas (men 40 %, women 31 %). Hypomethylation of the MINT1 locus (OR 5.3, 95% CI 1.0-28.2) and the PER1 (OR 2.9, 95% CI 1.1-7.7) and PER3 (OR 11.6, 95% CI 1.6-78.5) clock gene promoters was more common among adenoma cases. While specificity was moderate to high for the three markers (71-97 %), sensitivity was relatively low (18-45 %). Follow-up of these epigenetic markers is suggested to further evaluate their utility for adenoma screening or surveillance.

Cycle Time Optimization of Chamomile Package 120 MI Product at Blow Molding Process

Directory of Open Access Journals (Sweden)

Yuni Hermawan

2012-11-01

Full Text Available Chamomile is a package which is applied for cosmetic. In industry this package is being processed by blow molding. Thereare many parameters that influence cycle time during production; in this project only three of them were varied, i.e. blowingpressure, blowing time and stopping time. Each parameter is determined three chosen level. Middle level is taken fromstandard setting of machining which is being used by industry. Top and bottom level is randomized. Three stopping time are0.1, 0.55, and 1.0 second. Blowing time are 10.5, 11.5 and 12.5 second. Where as, blowing pressures is 4, 5 and 6 bar.Combination of among levels is based on Box Behnken design. Those three parameters are called variable process. In theother hand, variable responses are cycle time and net weight. Each combination is replicated 5 times and then averaged. Thedata then is processed by using Minitab version 14th. Square regression of the model for cycle time is ?CT = 21,1300 - 0,0912X1 + 0,2000 X2 + 0,6313 X3 + 0,6100 X12 + 0,6975 X22 – 0,1000 X1 X2 – 0,1725 X1 X3 + 0,1100 X2 X3 and Net = 19,2933 –0,0088 X1 + 0,0175 X2 + 0,0712 X3 + 0,0133 X 21 + 0.0158 X22- 0.0217 X 23 + 0.0125 X1X2 - 0,0150 X1 X3 for product netweight. Where X1 is blowing pressure, X2 is blowing time and X3 is stopping time.The model developed then tested by lack offit testing, variance by ANOVA and R square. Second stage of model testing is residual test. Three tests are carry out, i.e.identically test and independency test and normality. Optimization of both values, cycle time and net weight, are searched byResponse Surface Method. By the method it is found that the optimum condition of cycle time is 20.5 seconds and net weightis 19.19 grams. The optimum condition is achieved when stopping is 0.1 second, blowing time 11.35 second and blowingpressure 5.1 bars.

Chemoselective Methylation of Phenolic Hydroxyl Group Prevents Quinone Methide Formation and Repolymerization During Lignin Depolymerization

Energy Technology Data Exchange (ETDEWEB)

Kim, Kwang Ho; Dutta, Tanmoy; Walter, Eric D.; Isern, Nancy G.; Cort, John R.; Simmons, Blake A.; Singh, Seema

2017-03-30

Chemoselective blocking of the phenolic hydroxyl (Ar-OH) group by methylation was found to suppress secondary repolymerization and charring during lignin depolymerization. Methylation of Ar-OH prevents formation of reactive quinone methide intermediates, which are partly responsible for undesirable secondary repolymerization reactions. Instead, this structurally modified lignin produces more relatively low molecular weight products from lignin depolymerization compared to unmodified lignin. This result demonstrates that structural modification of lignin is desirable for production of low molecular weight phenolic products. This approach could be directed toward alteration of natural lignification processes to produce biomass more amenable to chemical depolymerization.

'Whistle-blowing' and the quandary of policy implementation in Nigeria

African Journals Online (AJOL)

Nigeria as a country has undergone series of economic policies and Programs to bring her economy back on track. These policies range from National Development Plan to the present day whistle-blowing policy. The whistle blowing policy was introduced by the administration of President Buhari in December, 2016, with a ...

Blow-up : A free lunch?

NARCIS (Netherlands)

Koenderink, J.J.; Richards, W.; Van Doorn, A.J.

2012-01-01

We consider operations that change the size of images, either shrinks or blow-ups. Image processing offers numerous possibilities, put at everyone’s disposal with such computer programs as Adobe Photoshop. We consider a different class of operations, aimed at immediate visual awareness, rather than

Standard molar enthalpies of formation of 1-methyl-2-piperidinemethanol, 1-piperidineethanol, and 2-piperidineethanol

International Nuclear Information System (INIS)

Ribeiro da Silva, Manuel A.V.; Cabral, Joana I.T.A.

2006-01-01

The standard (p o =0.1MPa) molar enthalpies of combustion, Δ c H m o , for the liquid compounds 1-methyl-2-piperidinemethanol, 1-piperidineethanol, and 2-piperidineethanol, were measured by static bomb calorimetry, in oxygen, at T=298.15K. The standard molar enthalpies of vaporization, at T=298.15K, of these three liquid compounds were determined by Calvet microcalorimetry. -Δ c H m o (l)/(kJ.mol -1 )Δ l g H m o /(kJ.mol -1 )1-Methyl-2-piperidinemethanol4598.3+/-1.868. 22+/-0.711-Piperidineethanol4595.2+/-1.764.18+/-0.812 -Piperidineethanol4566.2+/-1.375.24+/-0.52 These values, were used to derive the standard molar enthalpies of formation of the compounds, at T=298.15K, in their liquid and gaseous phase, respectively. The derived standard molar enthalpies of formation, in the gaseous state, are analyzed in terms of enthalpic increments and interpreted in terms of molecular structure.

Thermal large Eddy simulations and experiments in the framework of non-isothermal blowing

International Nuclear Information System (INIS)

Brillant, G.

2004-06-01

The aim of this work is to study thermal large-eddy simulations and to determine the nonisothermal blowing impact on a turbulent boundary layer. An experimental study is also carried out in order to complete and validate simulation results. In a first time, we developed a turbulent inlet condition for the velocity and the temperature, which is necessary for the blowing simulations.We studied the asymptotic behavior of the velocity, the temperature and the thermal turbulent fluxes in a large-eddy simulation point of view. We then considered dynamics models for the eddy-diffusivity and we simulated a turbulent channel flow with imposed temperature, imposed flux and adiabatic walls. The numerical and experimental study of blowing permitted to obtain to the modifications of a thermal turbulent boundary layer with the blowing rate. We observed the consequences of the blowing on mean and rms profiles of velocity and temperature but also on velocity-velocity and velocity-temperature correlations. Moreover, we noticed an increase of the turbulent structures in the boundary layer with blowing. (author)

Theoretical studies on the free-blowing process of the vent pipes in the pressure suppression system

International Nuclear Information System (INIS)

Aust, E.

1979-01-01

This report deals with the free-blowing period of the vent pipes in a pressure suppression system, treating especially the analytical simulation of this period. In order to do this the equations presently laid down for use in the computer codes and describing the free-blowing process are presented and their essential model simplifications are worked out. Subsequently, for the simple system of a U-tube filled with water, the fundamental mechanism of the free-blowing process is studied and the results to be transferred from it to the pressure suppression system are discussed. Based on them there are performed calculations with the individual free-blowing models using plant-related parameters as input data, in order to verify in a benchmark comparison the information and the results of calculation of the individual model concepts in relation to one another. Finally the validity of the individual model set-ups and the quality of their predictions are checked by means of experimental results from the pressure suppression experiments on the PSS test stand. (orig.) [de

CFD simulation of fatty acid methyl ester production in bubble column reactor

Science.gov (United States)

Salleh, N. S. Mohd; Nasir, N. F.

2017-09-01

Non-catalytic transesterification is one of the method that was used to produce the fatty acid methyl ester (FAME) by blowing superheated methanol bubbles continuously into the vegetable oil without using any catalyst. This research aimed to simulate the production of FAME from palm oil in a bubble column reactor. Computational Fluid Dynamic (CFD) simulation was used to predict the distribution of fatty acid methyl ester and other product in the reactor. The fluid flow and component of concentration along the reaction time was investigated and the effects of reaction temperature (523 K and 563 K) on the non-catalytic transesterification process has been examined. The study was carried out using ANSYS CFX 17.1. The finding from the study shows that increasing the temperature leads to higher amount of fatty acid methyl ester can be produced in shorter time. On the other hand, concentration of the component such as triglyceride (TG), glycerol (GL) and fatty acid methyl ester (FAME) can be known when reaching the optimum condition.

Numerical and experimental study of blowing jet on a high lift airfoil

Science.gov (United States)

Bobonea, A.; Pricop, M. V.

2013-10-01

Active manipulation of separated flows over airfoils at moderate and high angles of attack in order to improve efficiency or performance has been the focus of a number of numerical and experimental investigations for many years. One of the main methods used in active flow control is the usage of blowing devices with constant and pulsed blowing. Through CFD simulation over a 2D high-lift airfoil, this study is trying to highlight the impact of pulsed blowing over its aerodynamic characteristics. The available wind tunnel data from INCAS low speed facility are also beneficial for the validation of the numerical analysis. This study intends to analyze the impact of the blowing jet velocity and slot geometry on the efficiency of an active flow control.

Preparation of Fish Skin Gelatin-Based Nanofibers Incorporating Cinnamaldehyde by Solution Blow Spinning

Science.gov (United States)

Liu, Fei; Avena-Bustillos, Roberto J.; Bridges, David F.; Takeoka, Gary R.; Wu, Vivian C. H.; Chiou, Bor-Sen; McHugh, Tara H.; Zhong, Fang

2018-01-01

Cinnamaldehyde, a natural preservative that can non-specifically deactivate foodborne pathogens, was successfully incorporated into fish skin gelatin (FSG) solutions and blow spun into uniform nanofibers. The effects of cinnamaldehyde ratios (5–30%, w/w FSG) on physicochemical properties of fiber-forming emulsions (FFEs) and their nanofibers were investigated. Higher ratios resulted in higher values in particle size and viscosity of FFEs, as well as higher values in diameter of nanofibers. Loss of cinnamaldehyde was observed during solution blow spinning (SBS) process and cinnamaldehyde was mainly located on the surface of resultant nanofibers. Nanofibers all showed antibacterial activity by direct diffusion and vapor release against Escherichia coli O157:H7, Salmonella typhimurium, and Listeria monocytogenes. Inhibition zones increased as cinnamaldehyde ratio increased. Nanofibers showed larger inhibition effects than films prepared by casting method when S. typhimurium was exposed to the released cinnamaldehyde vapor, although films had higher remaining cinnamaldehyde than nanofibers after preparation. Lower temperature was favorable for cinnamaldehyde retention, and nanofibers added with 10% cinnamaldehyde ratio showed the highest retention over eight-weeks of storage. Results suggest that FSG nanofibers can be prepared by SBS as carriers for antimicrobials. PMID:29470390

Preparation of Fish Skin Gelatin-Based Nanofibers Incorporating Cinnamaldehyde by Solution Blow Spinning.

Science.gov (United States)

Liu, Fei; Türker Saricaoglu, Furkan; Avena-Bustillos, Roberto J; Bridges, David F; Takeoka, Gary R; Wu, Vivian C H; Chiou, Bor-Sen; Wood, Delilah F; McHugh, Tara H; Zhong, Fang

2018-02-22

Cinnamaldehyde, a natural preservative that can non-specifically deactivate foodborne pathogens, was successfully incorporated into fish skin gelatin (FSG) solutions and blow spun into uniform nanofibers. The effects of cinnamaldehyde ratios (5-30%, w / w FSG) on physicochemical properties of fiber-forming emulsions (FFEs) and their nanofibers were investigated. Higher ratios resulted in higher values in particle size and viscosity of FFEs, as well as higher values in diameter of nanofibers. Loss of cinnamaldehyde was observed during solution blow spinning (SBS) process and cinnamaldehyde was mainly located on the surface of resultant nanofibers. Nanofibers all showed antibacterial activity by direct diffusion and vapor release against Escherichia coli O157:H7 , Salmonella typhimurium , and Listeria monocytogenes . Inhibition zones increased as cinnamaldehyde ratio increased. Nanofibers showed larger inhibition effects than films prepared by casting method when S . typhimurium was exposed to the released cinnamaldehyde vapor, although films had higher remaining cinnamaldehyde than nanofibers after preparation. Lower temperature was favorable for cinnamaldehyde retention, and nanofibers added with 10% cinnamaldehyde ratio showed the highest retention over eight-weeks of storage. Results suggest that FSG nanofibers can be prepared by SBS as carriers for antimicrobials.

Blow-up criteria for the 3D cubic nonlinear Schrödinger equation

International Nuclear Information System (INIS)

Holmer, Justin; Platte, Rodrigo; Roudenko, Svetlana

2010-01-01

We consider solutions u to the 3D nonlinear Schrödinger equation i∂ t u + Δu + |u| 2 u = 0. In particular, we are interested in finding criteria on the initial data u 0 that predict the asymptotic behaviour of u(t), e.g., whether u(t) blows up in finite time, exists globally in time but behaves like a linear solution for large times (scatters), or exists globally in time but does not scatter. This question has been resolved (at least for H 1 data) (Duyckaerts–Holmer–Roudenko) if M[u]E[u] ≤ M[Q]E[Q], where M[u] and E[u] denote the mass and energy of u and Q denotes the ground state solution to −Q + ΔQ + |Q| 2 Q = 0. Here we consider the complementary case M[u]E[u] > M[Q]E[Q]. In the first (analytical) part of the paper, we present a result due to Lushnikov, based on the virial identity and the generalized uncertainty principle, giving a sufficient condition for blow-up. By replacing the uncertainty principle in his argument with an interpolation-type inequality, we obtain a new blow-up condition that in some cases improves upon Lushnikov's condition. Our approach also allows for an adaptation to radial infinite-variance initial data that has a conceptual interpretation: for real-valued initial data, if a certain fraction of the mass is contained within the ball of radius M[u], then blow up occurs. We also show analytically (if one takes the numerically computed value of ||Q|| .H 1/2 ) that there exist Gaussian initial data u 0 with negative quadratic phase such that ||u 0 || .H 1/2 .H 1/2 but the solution u(t) blows up. In the second (numerical) part of the paper, we examine several different classes of initial data—Gaussian, super Gaussian, off-centred Gaussian, and oscillatory Gaussian—and for each class give the theoretical predictions for scattering or blow-up provided by the above theorems as well as the results of numerical simulation. We find that depending upon the form of the initial conditions, any of the three analytical criteria for blow

Dynamic shock wave: hammer blow

International Nuclear Information System (INIS)

Lackme, Claude

1978-01-01

The general properties of shocks, their generation and the conditions of reflexion to an interface are dealt with in turn. By then applying these concepts to a liquid column and its environment (wall, free area, closing devices) the hammer blow is presented as being a relatively weak shock [fr

Instability of chromosome number and DNA methylation variation induced by hybridization and amphidiploid formation between Raphanus sativus L. and Brassica alboglabra Bailey

Directory of Open Access Journals (Sweden)

Wang Yanjie

2010-09-01

Full Text Available Abstract Background Distant hybridization can result genome duplication and allopolyploid formation which may play a significant role in the origin and evolution of many plant species. It is unclear how the two or more divergent genomes coordinate in one nucleus with a single parental cytoplasm within allopolyploids. We used cytological and molecular methods to investigate the genetic and epigenetic instabilities associated with the process of distant hybridization and allopolyploid formation, measuring changes in chromosome number and DNA methylation across multiple generations. Results F1 plants from intergeneric hybridization between Raphanus sativus L. (2n = 18, RR and Brassica alboglabra Bailey (2n = 18, CC were obtained by hand crosses and subsequent embryo rescue. Random amplification of polymorphic DNA (RAPD markers were used to identify the F1 hybrid plants. The RAPD data indicated that the hybrids produced specific bands similar to those of parents and new bands that were not present in either parent. Chromosome number variation of somatic cells from allotetraploids in the F4 to F10 generations showed that intensive genetic changes occurred in the early generations of distant hybridization, leading to the formation of mixopolyploids with different chromosome numbers. DNA methylation variation was revealed using MSAP (methylation-sensitive amplification polymorphism, which showed that cytosine methylation patterns changed markedly in the process of hybridization and amphidiploid formation. Differences in cytosine methylation levels demonstrated an epigenetic instability of the allopolyploid of Raphanobrassica between the genetically stable and unstable generations. Conclusions Our results showed that chromosome instability occurred in the early generations of allopolyploidy and then the plants were reverted to largely euploidy in later generations. During this process, DNA methylation changed markedly. These results suggest that

On the effect of leading edge blowing on circulation control airfoil aerodynamics

Science.gov (United States)

Mclachlan, B. G.

1987-01-01

In the present context the term circulation control is used to denote a method of lift generation that utilizes tangential jet blowing over the upper surface of a rounded trailing edge airfoil to determine the location of the boundary layer separation points, thus setting an effective Kutta condition. At present little information exists on the flow structure generated by circulation control airfoils under leading edge blowing. Consequently, no theoretical methods exist to predict airfoil performance under such conditions. An experimental study of the flow field generated by a two dimensional circulation control airfoil under steady leading and trailing edge blowing was undertaken. The objective was to fundamentally understand the overall flow structure generated and its relation to airfoil performance. Flow visualization was performed to define the overall flow field structure. Measurements of the airfoil forces were also made to provide a correlation of the observed flow field structure to airfoil performance. Preliminary results are presented, specifically on the effect on the flow field structure of leading edge blowing, alone and in conjunction with trailing edge blowing.

Ultrastructure of male genitalia of blow flies (Diptera: Calliphoridae) of forensic importance.

Science.gov (United States)

Sontigun, Narin; Sanit, Sangob; Wannasan, Anchalee; Sukontason, Kom; Amendt, Jens; Yasanga, Tippawan; Sukontason, Kabkaew L

2018-03-01

Male genitalia of blow flies (Diptera: Calliphoridae) are distinctive in their morphological features and are often used for species identification. The aim of this work was to investigate the male genitalia of blow flies of medical and forensic importance from Thailand at the ultrastructural level, using scanning electron microscopy (SEM). Flies in two subfamilies were examined: Chrysomyinae [Chrysomya bezziana Villeneuve, Chrysomya chani Kurahashi, Chrysomya nigripes Aubertin, Chrysomya pinguis (Walker), Chrysomya rufifacies (Macquart), Chrysomya thanomthini Kurahashi & Tumrasvin, and Chrysomya villeneuvi Patton] and Luciliinae [Hemipyrellia ligurriens (Wiedemann), Hypopygiopsis infumata (Bigot), Hypopygiopsis tumrasvini Kurahashi, Lucilia cuprina (Wiedemann), Lucilia papuensis Macquart, Lucilia porphyrina (Walker), and Lucilia sinensis Aubertin]. Particular attention was paid to the main distinguishing features such as the shapes of the cercus and the surstylus, and the complex structure of the distiphallus. The differentiation of the male genitalia of these species at the SEM level is discussed and compared to the conditions in closely related species such as Chrysomya megacephala (Fabricius). A key for the identification of 14 blow fly species based on male genitalia is provided. Copyright © 2017 Elsevier B.V. All rights reserved.

Sounds of Silence: Organisational trust and decisions to blow the whistle

Directory of Open Access Journals (Sweden)

Elli Binikos

2008-11-01

Full Text Available Whistleblowing is a form of pro-social behaviour that occurs when an employee reports organisational wrongdoing to an authority able to implement corrective action. While a number of social factors may infuence an employee’s decision to blow the whistle, very little cognisance is given to the role of organisational trust. Since whistleblowing situations often pose problems for whistleblowers, organisational trust becomes an important facilitator for the decision to blow the whistle. Drawing on a case study, this paper shows that when trust exists, employees are more likely to blow the whistle and to do so internally rather than externally.

A One-Dimensional Global-Scaling Erosive Burning Model Informed by Blowing Wall Turbulence

Science.gov (United States)

Kibbey, Timothy P.

2014-01-01

A derivation of turbulent flow parameters, combined with data from erosive burning test motors and blowing wall tests results in erosive burning model candidates useful in one-dimensional internal ballistics analysis capable of scaling across wide ranges of motor size. The real-time burn rate data comes from three test campaigns of subscale segmented solid rocket motors tested at two facilities. The flow theory admits the important effect of the blowing wall on the turbulent friction coefficient by using blowing wall data to determine the blowing wall friction coefficient. The erosive burning behavior of full-scale motors is now predicted more closely than with other recent models.

A Basic Study on Countermeasure Against Aerodynamic Force Acting on Train Running Inside Tunnel Using Air Blowing

Science.gov (United States)

Suzuki, Masahiro; Nakade, Koji

A basic study of flow controls using air blowing was conducted to reduce unsteady aerodynamic force acting on trains running in tunnels. An air blowing device is installed around a model car in a wind tunnel. Steady and periodic blowings are examined utilizing electromagnetic valves. Pressure fluctuations are measured and the aerodynamic force acting on the car is estimated. The results are as follows: a) The air blowing allows reducing the unsteady aerodynamic force. b) It is effective to blow air horizontally at the lower side of the car facing the tunnel wall. c) The reduction rate of the unsteady aerodynamic force relates to the rate of momentum of the blowing to that of the uniform flow. d) The periodic blowing with the same frequency as the unsteady aerodynamic force reduces the aerodynamic force in a manner similar to the steady blowing.

Methylated genes as new cancer biomarkers

DEFF Research Database (Denmark)

Brunner, Nils; Duffy, M.J; Napieralski, R.

2009-01-01

Aberrant hypermethylation of promoter regions in specific genes is a key event in the formation and progression of cancer. In at least some situations, these aberrant alterations occur early in the formation of malignancy and appear to be tumour specific. Multiple reports have suggested that meas......Aberrant hypermethylation of promoter regions in specific genes is a key event in the formation and progression of cancer. In at least some situations, these aberrant alterations occur early in the formation of malignancy and appear to be tumour specific. Multiple reports have suggested...... that measurement of the methylation status of the promoter regions of specific genes can aid early detection of cancer, determine prognosis and predict therapy responses. Promising DNA methylation biomarkers include the use of methylated GSTP1 for aiding the early diagnosis of prostate cancer, methylated PITX2...... for predicting outcome in lymph node-negative breast cancer patients and methylated MGMT in predicting benefit from alkylating agents in patients with glioblastomas. However, prior to clinical utilisation, these findings require validation in prospective clinical studies. Furthermore, assays for measuring gene...

Blow Flies Visiting Decaying Alligators: Is Succession Synchronous or Asynchronous?

OpenAIRE

Nelder, Mark P.; McCreadie, John W.; Major, Clinton S.

2009-01-01

Succession patterns of adult blow flies (Diptera: Calliphoridae) on decaying alligators were investigated in Mobile (Ala, USA) during August 2002. The most abundant blow fly species visiting the carcasses were Chrysomya rufifacies (Macquart), Cochliomyia macellaria (Fabricus), Chrysomya megacephala (Fabricus), Phormia regina (Meigen), and Lucilia coeruleiviridis (Macquart). Lucilia coeruleiviridis was collected more often during the early stages of decomposition, followed by Chrysomya spp., C...

IDENTIFICATION OF CFC AND HCFC SUBSTITUTES FOR BLOWING POLYURETHANE FOAM INSULATION PRODUCTS

Science.gov (United States)

The report gives results of a cooperative effort to identiry chlorofluorocarbons and hydrochlorofluorocarbon substitutes for blowing polyurethane foam insulation products. The substantial ongoing effort is identifying third-generation blowing agets for polyurethane foams to repla...

USB environment measurements based on full-scale static engine ground tests. [Upper Surface Blowing for YC-14

Science.gov (United States)

Sussman, M. B.; Harkonen, D. L.; Reed, J. B.

1976-01-01

Flow turning parameters, static pressures, surface temperatures, surface fluctuating pressures and acceleration levels were measured in the environment of a full-scale upper surface blowing (USB) propulsive-lift test configuration. The test components included a flightworthy CF6-50D engine, nacelle and USB flap assembly utilized in conjunction with ground verification testing of the USAF YC-14 Advanced Medium STOL Transport propulsion system. Results, based on a preliminary analysis of the data, generally show reasonable agreement with predicted levels based on model data. However, additional detailed analysis is required to confirm the preliminary evaluation, to help delineate certain discrepancies with model data and to establish a basis for future flight test comparisons.

Diagnostic markers of urothelial cancer based on DNA methylation analysis

International Nuclear Information System (INIS)

Chihara, Yoshitomo; Hirao, Yoshihiko; Kanai, Yae; Fujimoto, Hiroyuki; Sugano, Kokichi; Kawashima, Kiyotaka; Liang, Gangning; Jones, Peter A; Fujimoto, Kiyohide; Kuniyasu, Hiroki

2013-01-01

Early detection and risk assessment are crucial for treating urothelial cancer (UC), which is characterized by a high recurrence rate, and necessitates frequent and invasive monitoring. We aimed to establish diagnostic markers for UC based on DNA methylation. In this multi-center study, three independent sample sets were prepared. First, DNA methylation levels at CpG loci were measured in the training sets (tumor samples from 91 UC patients, corresponding normal-appearing tissue from these patients, and 12 normal tissues from age-matched bladder cancer-free patients) using the Illumina Golden Gate methylation assay to identify differentially methylated loci. Next, these methylated loci were validated by quantitative DNA methylation by pyrosequencing, using another cohort of tissue samples (Tissue validation set). Lastly, methylation of these markers was analyzed in the independent urine samples (Urine validation set). ROC analysis was performed to evaluate the diagnostic accuracy of these 12 selected markers. Of the 1303 CpG sites, 158 were hyper ethylated and 356 were hypo ethylated in tumor tissues compared to normal tissues. In the panel analysis, 12 loci showed remarkable alterations between tumor and normal samples, with 94.3% sensitivity and 97.8% specificity. Similarly, corresponding normal tissue could be distinguished from normal tissues with 76.0% sensitivity and 100% specificity. Furthermore, the diagnostic accuracy for UC of these markers determined in urine samples was high, with 100% sensitivity and 100% specificity. Based on these preliminary findings, diagnostic markers based on differential DNA methylation at specific loci can be useful for non-invasive and reliable detection of UC and epigenetic field defect

SIKAP, NORMA SUBJEKTIF, DAN INTENSI PEGAWAI NEGERI SIPIL UNTUK MENGADUKAN PELANGGARAN (WHISTLE-BLOWING

Directory of Open Access Journals (Sweden)

Erwan Suryono

2016-06-01

Full Text Available This study aims to investigate factors that influence civil servants to whistle-blow fraud. It also investigates the effect of government’s bureaucracy reforming program on the civil servants’ intention to whistle-blow fraud. By employing the theory of reasoned action, this study included variables of subjective norms, attitudes, and whistle-blowing intentions. This study used primary data gathered from questionnaires of 293 respondents. Respondents were civil servants in the ministries/agencies that have and have not implemented bureaucratic reforms. The findings of this study indicated that subjective norms positively affected the attitudes and intentions of civil servants to report the wrongdoings. However, the attitudes had no significant effect on civil servants’ whistle-blowing intentions. In addition, there are no significant differences on subjective norms, attitudes, and whistle-blowing intentions between civil servants in ministries/agencies that have implemented bureaucratic reforms and civil servants in ministries/agencies that have not implement bureaucratic reforms.

Absolute quantification of DNA methylation using microfluidic chip-based digital PCR.

Science.gov (United States)

Wu, Zhenhua; Bai, Yanan; Cheng, Zule; Liu, Fangming; Wang, Ping; Yang, Dawei; Li, Gang; Jin, Qinghui; Mao, Hongju; Zhao, Jianlong

2017-10-15

Hypermethylation of CpG islands in the promoter region of many tumor suppressor genes downregulates their expression and in a result promotes tumorigenesis. Therefore, detection of DNA methylation status is a convenient diagnostic tool for cancer detection. Here, we reported a novel method for the integrative detection of methylation by the microfluidic chip-based digital PCR. This method relies on methylation-sensitive restriction enzyme HpaII, which cleaves the unmethylated DNA strands while keeping the methylated ones intact. After HpaII treatment, the DNA methylation level is determined quantitatively by the microfluidic chip-based digital PCR with the lower limit of detection equal to 0.52%. To validate the applicability of this method, promoter methylation of two tumor suppressor genes (PCDHGB6 and HOXA9) was tested in 10 samples of early stage lung adenocarcinoma and their adjacent non-tumorous tissues. The consistency was observed in the analysis of these samples using our method and a conventional bisulfite pyrosequencing. Combining high sensitivity and low cost, the microfluidic chip-based digital PCR method might provide a promising alternative for the detection of DNA methylation and early diagnosis of epigenetics-related diseases. Copyright © 2017 Elsevier B.V. All rights reserved.

Reduction of airfoil trailing edge noise by trailing edge blowing

International Nuclear Information System (INIS)

Gerhard, T; Carolus, T; Erbslöh, S

2014-01-01

The paper deals with airfoil trailing edge noise and its reduction by trailing edge blowing. A Somers S834 airfoil section which originally was designed for small wind turbines is investigated. To mimic realistic Reynolds numbers the boundary layer is tripped on pressure and suction side. The chordwise position of the blowing slot is varied. The acoustic sources, i.e. the unsteady flow quantities in the turbulent boundary layer in the vicinity of the trailing edge, are quantified for the airfoil without and with trailing edge blowing by means of a large eddy simulation and complementary measurements. Eventually the far field airfoil noise is measured by a two-microphone filtering and correlation and a 40 microphone array technique. Both, LES-prediction and measurements showed that a suitable blowing jet on the airfoil suction side is able to reduce significantly the turbulence intensity and the induced surface pressure fluctuations in the trailing edge region. As a consequence, trailing edge noise associated with a spectral hump around 500 Hz could be reduced by 3 dB. For that a jet velocity of 50% of the free field velocity was sufficient. The most favourable slot position was at 90% chord length

The blow-off mechanism of a bluff-body stabilized laminar premixed flame

KAUST Repository

Kedia, Kushal S.

2015-04-01

© 2014 The Combustion Institute. The objective of this work is to investigate the dynamics leading to blow-off of a laminar premixed flame stabilized on a confined bluff-body using high fidelity numerical simulations. We used unsteady, fully resolved, two-dimensional simulations with detailed chemical kinetics and species transport for methane-air combustion. The flame-wall interaction between the hot reactants and the heat conducting bluff-body was accurately captured by incorporating the conjugate heat exchange between them. Simulations showed a shear-layer stabilized flame just downstream of the bluff-body, with a recirculation zone formed by the products of combustion. The flame was negatively stretched along its entire length, primarily dominated by the normal component of the strain. Blow-off was approached by decreasing the mixture equivalence ratio, at a fixed Reynolds number, of the incoming flow. A flame is stable (does not undergo blow-off) when (1) flame displacement speed is equal to the flow speed and (2) the gradient of the flame displacement speed normal to its surface is higher than the gradient of the flow speed along the same direction. As the equivalence ratio is reduced, the difference between the former and the latter shrinks until the dynamic stability condition (2) is violated, leading to blow-off. Blow-off initiates at a location where this is first violated along the flame. Our results showed that this location was far downstream from the flame anchoring zone, near the end of the recirculation zone. Blow-off started by flame pinching separating the flame into an upstream moving (carried within the recirculation zone) and a downstream convecting (detached from the recirculation zone) flame piece. Within the range of operating conditions investigated, the conjugate heat exchange with the bluff-body had no impact on the flame blow-off.

Convection heat transfer of closely-spaced spheres with surface blowing

Energy Technology Data Exchange (ETDEWEB)

Kleinstreuer, C. (North Carolina State Univ., Raleigh, NC (United States). Dept. of Mechanical and Aerospace Engineering); Chiang, H. (Thermofluid Technology Div., Industrial Technology Research Inst., Chutung (Taiwan, Province of China))

1993-05-01

A validated computer simulation model has been developed for the analysis of colinear spheres in a heated gas stream. Using the Galerkin finite element method, the steady-state Navier-Stokes and heat transfer equations have been solved describing laminar axisymmetric thermal flow past closely-spaced monodisperse spheres with fluid injection. Of interest are the coupled nonlinear interaction effects on the temperature fields and ultimately on the Nusselt number of each sphere for different free stream Reynolds numbers (20 [<=] Re [<=] 200) and intersphere distances (1.5 [<=] d[sub ij] [<=] 6.0) in the presence of surface blowing (0 [<=] v[sub b] [<=] 0.1). Fluid injection (i.e. blowing) and associated wake effects generate lower average heat transfer coefficients for each interacting sphere when the Reynolds number increases (Re > 100). Heat transfer is also reduced at small spacings especially for the second and third sphere. A Nusselt number correlation for each interacting (porous) sphere has been developed based on computer experiments. (orig.)

Description of regional blow-up in a porous-medium equation

Directory of Open Access Journals (Sweden)

Carmen Cortazar

2002-10-01

Full Text Available We describe the (finite-time blow-up phenomenon for a non-negative solution of a porous medium equation of the form $$ u_t = Delta u^m + u^m $$ in the entire space. Here $m>1$ and the initial condition is assumed compactly supported. Blow-up takes place exactly inside a finite number of balls with same radii and exhibiting the same self-similar profile.

Control of box C/D snoRNP assembly by N6-methylation of adenine.

Science.gov (United States)

Huang, Lin; Ashraf, Saira; Wang, Jia; Lilley, David Mj

2017-09-01

N 6 -methyladenine is the most widespread mRNA modification. A subset of human box C/D snoRNA species have target GAC sequences that lead to formation of N 6 -methyladenine at a key trans Hoogsteen-sugar A·G base pair, of which half are methylated in vivo The GAC target is conserved only in those that are methylated. Methylation prevents binding of the 15.5-kDa protein and the induced folding of the RNA Thus, the assembly of the box C/D snoRNP could in principle be regulated by RNA methylation at its critical first stage. Crystallography reveals that N 6 -methylation of adenine prevents the formation of trans Hoogsteen-sugar A·G base pairs, explaining why the box C/D RNA cannot adopt its kinked conformation. More generally, our data indicate that sheared A·G base pairs (but not Watson-Crick base pairs) are more susceptible to disruption by N 6 mA methylation and are therefore possible regulatory sites. The human signal recognition particle RNA and many related Alu retrotransposon RNA species are also methylated at N6 of an adenine that forms a sheared base pair with guanine and mediates a key tertiary interaction. © 2017 The Authors. Published under the terms of the CC BY 4.0 license.

Formation of soap bubbles by gas jet

Science.gov (United States)

Zhou, Maolei; Li, Min; Chen, Zhiyuan; Han, Jifeng; Liu, Dong

2017-12-01

Soap bubbles can be easily generated by various methods, while their formation process is complicated and still worth studying. A model about the bubble formation process was proposed in the study by Salkin et al. [Phys. Rev. Lett. 116, 077801 (2016)] recently, and it was reported that the bubbles were formed when the gas blowing velocity was above one threshold. However, after a detailed study of these experiments, we found that the bubbles could be generated in two velocity ranges which corresponded to the laminar and turbulent gas jet, respectively, and the predicted threshold was only effective for turbulent gas flow. The study revealed that the bubble formation was greatly influenced by the aerodynamics of the gas jet blowing to the film, and these results will help to further understand the formation mechanism of the soap bubble as well as the interaction between the gas jet and the thin liquid film.

Prevalence and virulence factors of Candida spp. associated with blow flies

Directory of Open Access Journals (Sweden)

Wimonrat GunTang

2017-05-01

Conclusions: The results indicate that blow flies could play an essential role in the transmission of potentially pathogenic and antifungal resistant C. albicans into the environment. Further investigation on other virulence factors and genetic relatedness among isolates from the blow flies, the environment and clinical specimens is required to confirm this role.

Effects of cathode channel size and operating conditions on the performance of air-blowing PEMFCs

International Nuclear Information System (INIS)

Kim, Bosung; Lee, Yongtaek; Woo, Ahyoung; Kim, Yongchan

2013-01-01

Highlights: • Effect of cathode channel size on the air-blowing PEMFC is analyzed. • Performance and EIS tests of air-blowing PEMFCs are conducted. • Test conditions include the operating temperature, fan voltage, and anode humidity. • Flooding is a limiting factor for decreasing channel size at low temperature. • Water management is investigated by analyzing ohmic resistance. - Abstract: Air-blowing proton exchange membrane fuel cells (PEMFCs) have been developed as a potential new power source for portable electronic devices. However, air-blowing PEMFCs show lower performance than compressed-air PEMFCs because of their adverse operating conditions. In this study, the effects of the cathode channel size and operating conditions on the performance of the air-blowing PEMFC were analyzed. At the normal operating temperature, the performance of the air-blowing PEMFC improved with the decrease in the cathode channel size. However, at a low operating temperature and low fan voltage, massive flooding limits the decrease in the cathode channel size. In addition, water management in the air-blowing PEMFC was investigated by analyzing ohmic resistance. The transition current density between the humidification and the flooding region decreased with decreasing cathode channel size and operating temperature

A DNA methylation-based definition of biologically distinct breast cancer subtypes.

Science.gov (United States)

Stefansson, Olafur A; Moran, Sebastian; Gomez, Antonio; Sayols, Sergi; Arribas-Jorba, Carlos; Sandoval, Juan; Hilmarsdottir, Holmfridur; Olafsdottir, Elinborg; Tryggvadottir, Laufey; Jonasson, Jon G; Eyfjord, Jorunn; Esteller, Manel

2015-03-01

In cancer, epigenetic states are deregulated and thought to be of significance in cancer development and progression. We explored DNA methylation-based signatures in association with breast cancer subtypes to assess their impact on clinical presentation and patient prognosis. DNA methylation was analyzed using Infinium 450K arrays in 40 tumors and 17 normal breast samples, together with DNA copy number changes and subtype-specific markers by tissue microarrays. The identified methylation signatures were validated against a cohort of 212 tumors annotated for breast cancer subtypes by the PAM50 method (The Cancer Genome Atlas). Selected markers were pyrosequenced in an independent validation cohort of 310 tumors and analyzed with respect to survival, clinical stage and grade. The results demonstrate that DNA methylation patterns linked to the luminal-B subtype are characterized by CpG island promoter methylation events. In contrast, a large fraction of basal-like tumors are characterized by hypomethylation events occurring within the gene body. Based on these hallmark signatures, we defined two DNA methylation-based subtypes, Epi-LumB and Epi-Basal, and show that they are associated with unfavorable clinical parameters and reduced survival. Our data show that distinct mechanisms leading to changes in CpG methylation states are operative in different breast cancer subtypes. Importantly, we show that a few selected proxy markers can be used to detect the distinct DNA methylation-based subtypes thereby providing valuable information on disease prognosis. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

The Strong Disjoint Blow-Up/Collapse Property

Directory of Open Access Journals (Sweden)

Héctor N. Salas

2013-01-01

Full Text Available Let be a topological vector space, and let be the algebra of continuous linear operators on . The operators are disjoint hypercyclic if there is such that the orbit is dense in . Bès and Peris have shown that if satisfy the Disjoint Blow-up/Collapse property, then they are disjoint hypercyclic. In a recent paper Bès, Martin, and Sanders, among other things, have characterized disjoint hypercyclic -tuples of weighted shifts in terms of this property. We introduce the Strong Disjoint Blow-up/Collapse property and prove that if satisfy this new property, then they have a dense linear manifold of disjoint hypercyclic vectors. This allows us to give a partial affirmative answer to one of their questions.

First Satellite-detected Perturbations of Outgoing Longwave Radiation Associated with Blowing Snow Events over Antarctica

Science.gov (United States)

Yang, Yuekui; Palm, Stephen P.; Marshak, Alexander; Wu, Dong L.; Yu, Hongbin; Fu, Qiang

2014-01-01

We present the first satellite-detected perturbations of the outgoing longwave radiation (OLR) associated with blowing snow events over the Antarctic ice sheet using data from Cloud-Aerosol Lidar with Orthogonal Polarization and Clouds and the Earth's Radiant Energy System. Significant cloud-free OLR differences are observed between the clear and blowing snow sky, with the sign andmagnitude depending on season and time of the day. During nighttime, OLRs are usually larger when blowing snow is present; the average difference in OLRs between without and with blowing snow over the East Antarctic Ice Sheet is about 5.2 W/m2 for the winter months of 2009. During daytime, in contrast, the OLR perturbation is usually smaller or even has the opposite sign. The observed seasonal variations and day-night differences in the OLR perturbation are consistent with theoretical calculations of the influence of blowing snow on OLR. Detailed atmospheric profiles are needed to quantify the radiative effect of blowing snow from the satellite observations.

Employees’ intention to blow the whistle: The role of fairness and moral identity

Directory of Open Access Journals (Sweden)

Karin Proost, Adríana Pavlinská, Elfi Baillien, Lieven Brebels, Anja Van den Broeck

2013-10-01

Full Text Available In this study we focused on key concepts – moral identity and fairness – in order to explain whistleblowingintention. We examined the relationship between intention to blow the whistle and moral identity, and exploredthe moderating effect of perceived supervisor procedural fairness in this relationship. Our results showed thatemployees (N = 278 with a strong moral identity were more likely to blow the whistle on wrongdoing of whichthey had become aware of, and employees who were low in moral identity were less likely to blow the whistle.Furthermore, we found that the impact of moral identity on the intention to blow the whistle is increased by highprocedural fairness, and that low procedural fairness leaves this relationship insignificant. These findingsrepresent new insights into the study of whistleblowing.

Shooting method for solution of boundary-layer flows with massive blowing

Science.gov (United States)

Liu, T.-M.; Nachtsheim, P. R.

1973-01-01

A modified, bidirectional shooting method is presented for solving boundary-layer equations under conditions of massive blowing. Unlike the conventional shooting method, which is unstable when the blowing rate increases, the proposed method avoids the unstable direction and is capable of solving complex boundary-layer problems involving mass and energy balance on the surface.

On wake response to asymmetric blowing in spurts from a blunt ...

Indian Academy of Sciences (India)

tion and generation of noise continue to attract the attention of researchers .... the crest width was maintained as one-fifth of the full cycle, thereby making the blowing .... result in any discernible change in the velocity profile far from the base region, x/h = 5, .... Proceedings of the 44th IEEE Conf. on Decision and Control, and.

How does nose blowing effect the computed tomography of paranasal sinuses in chronic sinusitis?

International Nuclear Information System (INIS)

Savranlar, Ahmet; Uzun, Lokman; Ugur, Mehmet Birol; Mahmutyazicioglu, Kamran; Ozer, Tulay; Gundogdu, Sadi

2005-01-01

Objective: Our aim was to determine whether inward or outward movement of the secretions in the paranasal sinuses due to nose blowing after nasal decongestion has any effect on the paranasal sinus computed tomography (CT) images in patients with sinusitis and to asses whether nose blowing may result in misdiagnosis or overdiagnosis in radiological evaluation of sinusitis. Materials and methods: Twenty-four patients with chronic sinusitis were evaluated in an academic tertiary care hospital and data were collected prospectively. After coronal sinus computed tomography scans were performed at 100 mA setting which was half the value of the standard radiation dose suggested by the manufacturer, topical decongestion was applied to each nostril followed by nose blowing 10 min later. Sinus CT scans were then repeated at the same setting. We evaluated the mucosal thickness of medial, lateral, superior and inferior maxillary and frontal sinus walls and the maximal thickness in anterior ethmoidal cells. The measurements prior to and following nose blowing were compared with Wilcoxon signed ranks test. The obtained images were also staged using Lund-McKay staging system separately and the scores were compared with Student's t-test. Results: We observed a tendency towards reduction in mucosal thickness after nose blowing. There were statistically significant differences between maxillary sinus inferior wall and frontal sinus inferior wall mucosal thickness values prior to and after nose blowing. The difference however was very small, about 0.5 mm in magnitude and Lund-McKay score did not change in any of the patients after nose blowing. Conclusion: Nose blowing and topical nasal decongestion does not have any effect on the diagnostic accuracy of sinus CT in chronic sinusitis patients

Plasma membrane H(+)-ATPase is involved in methyl jasmonate-induced root hair formation in lettuce (Lactuca sativa L.) seedlings.

Science.gov (United States)

Zhu, Changhua; Yang, Na; Ma, Xiaoling; Li, Guijun; Qian, Meng; Ng, Denny; Xia, Kai; Gan, Lijun

2015-06-01

Our results show that methyl jasmonate induces plasma membrane H (+) -ATPase activity and subsequently influences the apoplastic pH of trichoblasts to maintain a cell wall pH environment appropriate for root hair development. Root hairs, which arise from root epidermal cells, are tubular structures that increase the efficiency of water absorption and nutrient uptake. Plant hormones are critical regulators of root hair development. In this study, we investigated the regulatory role of the plasma membrane (PM) H(+)-ATPase in methyl jasmonate (MeJA)-induced root hair formation. We found that MeJA had a pronounced effect on the promotion of root hair formation in lettuce seedlings, but that this effect was blocked by the PM H(+)-ATPase inhibitor vanadate. Furthermore, MeJA treatment increased PM H(+)-ATPase activity in parallel with H(+) efflux from the root tips of lettuce seedlings and rhizosphere acidification. Our results also showed that MeJA-induced root hair formation was accompanied by hydrogen peroxide accumulation. The apoplastic acidification acted in concert with reactive oxygen species to modulate root hair formation. Our results suggest that the effect of MeJA on root hair formation is mediated by modulation of PM H(+)-ATPase activity.

Formation of polystyrene/poly(methyl methacrylate) heteroarm star-like nanogels from complementarily reactive well-defined diblock copolymers

Energy Technology Data Exchange (ETDEWEB)

Amamoto, Y; Otsuka, H; Takahara, A, E-mail: otsuka@ms.ifoc.kyushu-u.ac.j [Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0385 (Japan)

2009-08-01

Formation of star-like nanogels with two different arms via cross-linking reaction of complementarily reactive diblock copolymers was successfully accomplished. The two types of diblock copolymers, consisting of poly(methyl methacrylate) (PMMA) or polystyrene (PSt) block and alkoxyamine-based cross-linkable block, were prepared by atom transfer radical polymerization (ATRP) methods. The cross-linking reactions were carried out by merely heating their mixture, and traced by gel permeation chromatography (GPC) and multi-angle light scattering (MALS) measurements. The diblock copolymers were reacted in complementarily reactive systems, showing that all star-like nanogels have necessarily two types of arms as PMMA and PSt chains.

Control of leading edge vortex breakdown by blowing

Science.gov (United States)

Visser, K. D.; Iwanski, K. P.; Nelson, R. C.; Ng, T. T.

1988-01-01

An investigation into the effects of using a jet of air to control the vortex breakdown position on a 70 degree delta wing is presented. The specific objectives focused on optimizing the blowing positions in terms of maximum lift increments obtained for minimum blowing rates. The tests were conducted at chord Reynolds numbers of 150,000, 200,000, and 250,000 at angles of incidence of 30 and 35 degrees. Visualization and force data is presented to show the effect of the jet on the wing aerodynamic characteristics. The results indicate a jet position located at and aligned parallel to the leading edge to be the optimum. Nearness to the apex and tangency to the upper surface were also crucial factors. The influence of the jet on the leading edge vortex structure was examined using laser Doppler anemometry. Velocity surveys through the vortex showed that at high blowing rates the parallel velocity in the outer swirling region of the vortex increased and the normal velocity decreased. This resulted in a decrease in the swirling angle in the outer region. The peak core velocity was reduced and the vortex breakdown was delayed.

Methylated genes as new cancer biomarkers.

LENUS (Irish Health Repository)

Duffy, M J

2012-02-01

Aberrant hypermethylation of promoter regions in specific genes is a key event in the formation and progression of cancer. In at least some situations, these aberrant alterations occur early in the formation of malignancy and appear to be tumour specific. Multiple reports have suggested that measurement of the methylation status of the promoter regions of specific genes can aid early detection of cancer, determine prognosis and predict therapy responses. Promising DNA methylation biomarkers include the use of methylated GSTP1 for aiding the early diagnosis of prostate cancer, methylated PITX2 for predicting outcome in lymph node-negative breast cancer patients and methylated MGMT in predicting benefit from alkylating agents in patients with glioblastomas. However, prior to clinical utilisation, these findings require validation in prospective clinical studies. Furthermore, assays for measuring gene methylation need to be standardised, simplified and evaluated in external quality assurance programmes. It is concluded that methylated genes have the potential to provide a new generation of cancer biomarkers.

Blow-off of hydrogen using an optimized design of discharge jet-mixer arrangement

International Nuclear Information System (INIS)

Ristow, Torsten

2011-01-01

Hydrogen is ignitable in air at volume concentrations between 4 % and 75 %. Therefore, in the case of an emergency evacuation of a hydrogen-cooled generator in nuclear power plants, the gas has to be safely blown-off above the turbine building. Especially, a leakage at the hydrogen containing piping system at the generator has gained more and more importance in the context of safety assessments. The design of a blow-off system respects two safety aspects: Firstly, a short blow-off time is necessary to reduce the hydrogen release inside the turbine building in case of a leakage. Secondly, for the postulated ignition of the released hydrogen on the roof of the building the resulting pressure load must remain below the maximum admissible one of the turbine building roof. In order to fulfill the first condition an appropriate fast evacuation piping system from the generator to the blow-off outlet is designed. Regarding the latter the blow-off system uses special discharge nozzles placed horizontally in a radial-symmetric configuration. In this respect, the influence of strong wind conditions during the evacuation process is also considered. The resulting ignitable volume of the overlapping H2-air clouds does not exceed the maximum allowed ignitable volume. In the following the underlying process of blow-off by a fast hydrogen evacuation system is discussed. First the transient general blow-off behavior in the dedicated piping system is analyzed with the fluid piping tool ROLAST. The results of these calculations are boundary conditions for the subsequent qualification of the blow-off jet-mixer. Here a proof of the general functionality is given (2D CFD). Subsequently the blow-off behavior of the H2-air mixture is discussed in independent 3D CFD calculations with and without wind. From these analyses the possible ignitable gas volumes are determined. Final step is a simplified semi-analytical assessment of the resulting possible deflagration loads on the civil structure

Blowing-up Semilinear Wave Equation with Exponential ...

Indian Academy of Sciences (India)

Blowing-up Semilinear Wave Equation with Exponential Nonlinearity in Two Space ... We investigate the initial value problem for some semi-linear wave equation in two space dimensions with exponential nonlinearity growth. ... Current Issue

INCOMPRESSIBLE LAMINAR BOUNDARY LAYER CONTROL BY BLOWING AND SUCTION

OpenAIRE

AZZEDINE NAHOUI; LAKHDAR BAHI

2013-01-01

A two-dimensional incompressible laminar boundary layer and its control using blowing and suction over a flat plate and around the NACA 0012 and 661012 profiles, is studied numerically. The study is based on the Prandtl boundary layer model using the finite differences method and the Crank-Nicolson scheme. The velocity distribution, the boundary layer thickness and the friction coefficient, are determined and presented with and without control. The application of the control technique, has de...

Blow molding electric drives of Mechanical Engineering

Science.gov (United States)

Bukhanov, S. S.; Ramazanov, M. A.; Tsirkunenko, A. T.

2018-03-01

The article considers the questions about the analysis of new possibilities, which gives the use of adjustable electric drives for blowing mechanisms of plastic production. Thus, the use of new semiconductor converters makes it possible not only to compensate the instability of the supply network by using special dynamic voltage regulators, but to improve (correct) the power factor. The calculation of economic efficiency in controlled electric drives of blowing mechanisms is given. On the basis of statistical analysis, the calculation of the reliability parameters of the regulated electric drives’ elements under consideration is given. It is shown that an increase in the reliability of adjustable electric drives is possible both due to overestimation of the electric drive’s installed power, and in simpler schemes with pulse-vector control.

How does nose blowing effect the computed tomography of paranasal sinuses in chronic sinusitis?

Energy Technology Data Exchange (ETDEWEB)

Savranlar, Ahmet; Uzun, Lokman; Ugur, Mehmet Birol; Mahmutyazicioglu, Kamran; Ozer, Tulay; Gundogdu, Sadi

2005-02-01

Objective: Our aim was to determine whether inward or outward movement of the secretions in the paranasal sinuses due to nose blowing after nasal decongestion has any effect on the paranasal sinus computed tomography (CT) images in patients with sinusitis and to asses whether nose blowing may result in misdiagnosis or overdiagnosis in radiological evaluation of sinusitis. Materials and methods: Twenty-four patients with chronic sinusitis were evaluated in an academic tertiary care hospital and data were collected prospectively. After coronal sinus computed tomography scans were performed at 100 mA setting which was half the value of the standard radiation dose suggested by the manufacturer, topical decongestion was applied to each nostril followed by nose blowing 10 min later. Sinus CT scans were then repeated at the same setting. We evaluated the mucosal thickness of medial, lateral, superior and inferior maxillary and frontal sinus walls and the maximal thickness in anterior ethmoidal cells. The measurements prior to and following nose blowing were compared with Wilcoxon signed ranks test. The obtained images were also staged using Lund-McKay staging system separately and the scores were compared with Student's t-test. Results: We observed a tendency towards reduction in mucosal thickness after nose blowing. There were statistically significant differences between maxillary sinus inferior wall and frontal sinus inferior wall mucosal thickness values prior to and after nose blowing. The difference however was very small, about 0.5 mm in magnitude and Lund-McKay score did not change in any of the patients after nose blowing. Conclusion: Nose blowing and topical nasal decongestion does not have any effect on the diagnostic accuracy of sinus CT in chronic sinusitis patients.

Navier-Stokes Computations of a Wing-Flap Model With Blowing Normal to the Flap Surface

Science.gov (United States)

Boyd, D. Douglas, Jr.

2005-01-01

A computational study of a generic wing with a half span flap shows the mean flow effects of several blown flap configurations. The effort compares and contrasts the thin-layer, Reynolds averaged, Navier-Stokes solutions of a baseline wing-flap configuration with configurations that have blowing normal to the flap surface through small slits near the flap side edge. Vorticity contours reveal a dual vortex structure at the flap side edge for all cases. The dual vortex merges into a single vortex at approximately the mid-flap chord location. Upper surface blowing reduces the strength of the merged vortex and moves the vortex away from the upper edge. Lower surface blowing thickens the lower shear layer and weakens the merged vortex, but not as much as upper surface blowing. Side surface blowing forces the lower surface vortex farther outboard of the flap edge by effectively increasing the aerodynamic span of the flap. It is seen that there is no global aerodynamic penalty or benefit from the particular blowing configurations examined.

Kinetics and mechanism of carbon-8 methylation of purine bases and nucleosides by methyl radical

International Nuclear Information System (INIS)

Zady, M.F.; Wong, J.L.

1977-01-01

The kinetics of homolytic methylation of the model purine compound caffeine at carbon-8 were determined as a function of several reaction variables. The methyl radical was generated from tert-butyl peracetate (BPA) either thermally (65 to 95 0 C) or photochemically (greater than 300 nm, 25 0 C). The thermal reaction k (25 0 C) was found to be 3.09 x 10 -8 s -1 from the linear log k (pseudo-first-order) vs. l/T plot. The light reactions using the 450- and 1200-W mercury lamps proceeded with k (25 0 C) 450- and 2160-fold greater, respectively. The derived activation energies are consistent with an S/sub E/Ar reaction. Increasing the concentration of caffeine from 0.25 M to 1.67 M in the presence of 3 molar equiv of BPA did not cause any side reaction. The pH-rate profile can be predicted by rate equations, which are derived on the basis of an electrophilic substitution occurring on the free base and conjugate acid of a heteroaromatic system. A competition study using tetrahydrofuran reveals the presence of a radical sigma complex IIIa and a charge transfer complex IIIb as intermediates for methylation under neutral and acidic conditions, respectively. Their rate-determining nature was indicated by the small positive kinetic isotope effect and the inverse solvent isotope effects: k/sub H 3 O + //k/sub D 3 O + / = 0.87 and k/sub H 2 O//k/sub D 2 O/ = 0.32. Thus, in acidic medium, a preequilibrium proton transfer to form the caffeine conjugate acid precedes the rate-controlling formation of IIIb. In neutral solution, the rate-determining step appears to be the protonation of the radical nitrogen in IIIa converting it to III. The acid-catalyzed caffeine-BPA reaction was shown to be general for other purines such as adenine, adenosine, guanine, guanosine, hypoxanthine, and inosine

Asymptotic properties of blow-up solutions in reaction-diffusion equations with nonlocal boundary flux

Science.gov (United States)

Liu, Bingchen; Dong, Mengzhen; Li, Fengjie

2018-04-01

This paper deals with a reaction-diffusion problem with coupled nonlinear inner sources and nonlocal boundary flux. Firstly, we propose the critical exponents on nonsimultaneous blow-up under some conditions on the initial data. Secondly, we combine the scaling technique and the Green's identity method to determine four kinds of simultaneous blow-up rates. Thirdly, the lower and the upper bounds of blow-up time are derived by using Sobolev-type differential inequalities.

Influence of Polylactide Modification with Blowing Agents on Selected Mechanical Properties

Directory of Open Access Journals (Sweden)

Aneta Tor-Świątek

2017-12-01

Full Text Available Article presents research of modification of PLA with four types of chemical blowing agents with a different decomposition characteristic. The modification was done both cellular extrusion and injection molding processes. Obtained results shows that dosing blowing agents have the influence on mechanical properties and structure morphology of PLA. The differences in obtained results are also visible and significant between cellular processes.

Blow-up, Global Existence and Persistence Properties for the Coupled Camassa–Holm equations

International Nuclear Information System (INIS)

Zhu Mingxuan

2011-01-01

In this paper, we consider the coupled Camassa–Holm equations. First, we present some new criteria on blow-up. Then global existence and blow-up rate of the solution are also established. Finally, we discuss persistence properties of this system.

The index of a vector field under blow ups

International Nuclear Information System (INIS)

Seade, J.

1991-08-01

A useful technique when studying the behaviour of holomorphic vector fields around their isolated singularities is that of blowing up the singular points. On the other hand, the most basic invariant of a vector field with isolated singularities is its local index, as defined by Poincare and Hopf. It is thus natural to ask how does the index of a vector field behaves under blowing ups? The purpose of this work is to study and answer this question, by taking a rather general point of view and bearing in mind that complex manifolds have a powerful birational invariant, the Todd genus. 20 refs

Generating Soap Bubbles by Blowing on Soap Films

Science.gov (United States)

Salkin, Louis; Schmit, Alexandre; Panizza, Pascal; Courbin, Laurent

2016-02-01

Making soap bubbles by blowing air on a soap film is an enjoyable activity, yet a poorly understood phenomenon. Working either with circular bubble wands or long-lived vertical soap films having an adjustable steady state thickness, we investigate the formation of such bubbles when a gas is blown through a nozzle onto a film. We vary film size, nozzle radius, space between the film and nozzle, and gas density, and we measure the gas velocity threshold above which bubbles are formed. The response is sensitive to containment, i.e., the ratio between film and jet sizes, and dissipation in the turbulent gas jet, which is a function of the distance from the film to the nozzle. We rationalize the observed four different regimes by comparing the dynamic pressure exerted by the jet on the film and the Laplace pressure needed to create the curved surface of a bubble. This simple model allows us to account for the interplay between hydrodynamic, physicochemical, and geometrical factors.

Identification of a polyketide synthase required for alternariol (AOH and alternariol-9-methyl ether (AME formation in Alternaria alternata.

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Debjani Saha

Full Text Available Alternaria alternata produces more than 60 secondary metabolites, among which alternariol (AOH and alternariol-9-methyl ether (AME are important mycotoxins. Whereas the toxicology of these two polyketide-based compounds has been studied, nothing is known about the genetics of their biosynthesis. One of the postulated core enzymes in the biosynthesis of AOH and AME is polyketide synthase (PKS. In a draft genome sequence of A. alternata we identified 10 putative PKS-encoding genes. The timing of the expression of two PKS genes, pksJ and pksH, correlated with the production of AOH and AME. The PksJ and PksH proteins are predicted to be 2222 and 2821 amino acids in length, respectively. They are both iterative type I reducing polyketide synthases. PksJ harbors a peroxisomal targeting sequence at the C-terminus, suggesting that the biosynthesis occurs at least partly in these organelles. In the vicinity of pksJ we found a transcriptional regulator, altR, involved in pksJ induction and a putative methyl transferase, possibly responsible for AME formation. Downregulation of pksJ and altR caused a large decrease of alternariol formation, suggesting that PksJ is the polyketide synthase required for the postulated Claisen condensations during the biosynthesis. No other enzymes appeared to be required. PksH downregulation affected pksJ expression and thus caused an indirect effect on AOH production.

Transition between extinction and blow-up in a generalized Fisher–KPP model

Energy Technology Data Exchange (ETDEWEB)

Hernández-Bermejo, Benito, E-mail: benito.hernandez@urjc.es [Departamento de Física, Universidad Rey Juan Carlos, Calle Tulipán S/N, 28933, Móstoles, Madrid (Spain); Sánchez-Valdés, Ariel [Departamento de Matemática Aplicada, Universidad Rey Juan Carlos, Calle Tulipán S/N, 28933, Móstoles, Madrid (Spain)

2014-05-01

Stationary solutions of the Fisher–KPP equation with general nonlinear diffusion and arbitrary reactional kinetic orders terms are characterized. Such stationary (separatrix-like) solutions disjoint the blow-up solutions from those showing extinction. In addition a criterion for general parameter values is presented, which allows determining the blow-up or vanishing character of the solutions.

Transition between extinction and blow-up in a generalized Fisher–KPP model

International Nuclear Information System (INIS)

Hernández-Bermejo, Benito; Sánchez-Valdés, Ariel

2014-01-01

Stationary solutions of the Fisher–KPP equation with general nonlinear diffusion and arbitrary reactional kinetic orders terms are characterized. Such stationary (separatrix-like) solutions disjoint the blow-up solutions from those showing extinction. In addition a criterion for general parameter values is presented, which allows determining the blow-up or vanishing character of the solutions.

Oxygenated base chemicals from synthesis gas

Energy Technology Data Exchange (ETDEWEB)

Roeper, M.

1984-11-01

Methyl formate, a syngas based intermediate, is already today produced on large scale by base catalyzed methanol carbonylation. An alternative synthesis, based on methanol dehydrogenation, seems to be ready for commercialization, whereas other routes including direct carbon monoxide hydrogenation, formaldehyde disproportionation or methanol oxydehydrogenation are less advanced. Besides being used as a solvent or an insect control agent, methyl formate serves as a feedstock for e.g. formic acid, formamide, N,N-dimethylformamide, and N-formyl morpholine. Newer formic acid processes are based on direct hydrolysis of methyl formate, and appear to replace the traditional indirect formamide based route. Future use of methyl formate could include the production of pure carbon monoxide, methanol, dimethyl carbonate, diphosgene, ethylene glycol via methyl glycolate, acetic acid, and methyl propionate. All these processes either avoid the use of high purity carbon monoxide or proceed under milder conditions than conventional routes. They could gain interest, if syngas and methanol become available at a large scale as competitive feedstocks for the chemical industry.

NMDA Receptor- and ERK-Dependent Histone Methylation Changes in the Lateral Amygdala Bidirectionally Regulate Fear Memory Formation

Science.gov (United States)

Gupta-Agarwal, Swati; Jarome, Timothy J.; Fernandez, Jordan; Lubin, Farah D.

2014-01-01

It is well established that fear memory formation requires de novo gene transcription in the amygdala. We provide evidence that epigenetic mechanisms in the form of histone lysine methylation in the lateral amygdala (LA) are regulated by NMDA receptor (NMDAR) signaling and involved in gene transcription changes necessary for fear memory…

Finite-time blow-up for quasilinear degenerate Keller-Segel systems of parabolic-parabolic type

Science.gov (United States)

Hashira, Takahiro; Ishida, Sachiko; Yokota, Tomomi

2018-05-01

This paper deals with the quasilinear degenerate Keller-Segel systems of parabolic-parabolic type in a ball of RN (N ≥ 2). In the case of non-degenerate diffusion, Cieślak-Stinner [3,4] proved that if q > m + 2/N, where m denotes the intensity of diffusion and q denotes the nonlinearity, then there exist initial data such that the corresponding solution blows up in finite time. As to the case of degenerate diffusion, it is known that a solution blows up if q > m + 2/N (see Ishida-Yokota [13]); however, whether the blow-up time is finite or infinite has been unknown. This paper gives an answer to the unsolved problem. Indeed, the finite-time blow-up of energy solutions is established when q > m + 2/N.

The performance of ethics course for increasing students intention to blow the whistle using information technology

Science.gov (United States)

Munandar, Agus

2017-10-01

The profession of accounting believes that ethics is very important in the workplace. For that, profession recommends that ethics course should be taught for accounting student. Unfornutaly, the impact of ethics courses on accounting students intention to blow the whistle on organizational wrongdoing using information technology have not been determined. For that, this paper attempts to measure the impact of ethics courses on accounting student intention to blow the whistle on organizational wrongdoing. The research using experimental design for investigate the impact of ethic course on students intention to blow the whistle using IT. The respondents for this study are 40 accountig students. The respondent were given the ethical scenarios and were measured their intention to blow the whistle using information technology. This result of study reports that 70% of accounting student who completed ethic course indicated high intention to blow the whistle on organizational wrongdoing using information technology. Hence, ethics course is beneficial for increasing accounting professionalism especially their intentio to blow the whistle wrongdoing using information technology.

A Mathematical Model for Reactions During Top-Blowing in the AOD Process: Validation and Results

Science.gov (United States)

Visuri, Ville-Valtteri; Järvinen, Mika; Kärnä, Aki; Sulasalmi, Petri; Heikkinen, Eetu-Pekka; Kupari, Pentti; Fabritius, Timo

2017-06-01

In earlier work, a fundamental mathematical model was proposed for side-blowing operation in the argon oxygen decarburization (AOD) process. In the preceding part "Derivation of the Model," a new mathematical model was proposed for reactions during top-blowing in the AOD process. In this model it was assumed that reactions occur simultaneously at the surface of the cavity caused by the gas jet and at the surface of the metal droplets ejected from the metal bath. This paper presents validation and preliminary results with twelve industrial heats. In the studied heats, the last combined-blowing stage was altered so that oxygen was introduced from the top lance only. Four heats were conducted using an oxygen-nitrogen mixture (1:1), while eight heats were conducted with pure oxygen. Simultaneously, nitrogen or argon gas was blown via tuyères in order to provide mixing that is comparable to regular practice. The measured carbon content varied from 0.4 to 0.5 wt pct before the studied stage to 0.1 to 0.2 wt pct after the studied stage. The results suggest that the model is capable of predicting changes in metal bath composition and temperature with a reasonably high degree of accuracy. The calculations indicate that the top slag may supply oxygen for decarburization during top-blowing. Furthermore, it is postulated that the metal droplets generated by the shear stress of top-blowing create a large mass exchange area, which plays an important role in enabling the high decarburization rates observed during top-blowing in the AOD process. The overall rate of decarburization attributable to top-blowing in the last combined-blowing stage was found to be limited by the mass transfer of dissolved carbon.

Nose micro-blowing for asymmetric vortices control on blunt-nose slender body at high angle of attack

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Lei Wang

2017-11-01

Full Text Available The asymmetric vortices over blunt-nose slender body at high angles of attack result in random side force. In this paper, a nose micro-blowing technology is used to control the asymmetric flow. Pressure measurement and particle image velocimetry (PIV experiments are conducted in a low-speed wind tunnel to research effects of jet flow rate on asymmetric vortices over blunt-nose slender body. The angle of attack of the model is fixed at 50° and the Reynolds number for the experiments is 1.6×10 5 based on diameter of aftbody. A blow hole (5 mm in diameter on the nose is processed at circumferential angle θb= 90° and meridian angle γb= 20° with jet momentum ratio Cμ ranging from 5.30×10-7 to 1.19×10−4. Tests are made under two kinds of perturbations. One is called single perturbation with only blow hole and the other is called combined perturbation consists of blow hole and additional granules set on nose. The results show that whether the model has the single perturbation or the combined one, the sectional side force of x/D = 3 varies in the same direction with the increasement of Cμ and remains stable when Cμ is greater than 3.29×10−6. But the stable force values are different according to various perturbations. The fact proves that the size and direction of the side force of blunt-nose slender body can be controlled by the nose micro-blowing.

Analysis of Tonguing and Blowing Actions During Clarinet Performance.

Science.gov (United States)

Pàmies-Vilà, Montserrat; Hofmann, Alex; Chatziioannou, Vasileios

2018-01-01

Articulation on the clarinet is achieved by a combination of precise actions taking place inside the player's mouth. With the aim to analyse the effects of tonguing and blowing actions during playing, several physical variables are measured and parameters related to articulation are studied. Mouth pressure, mouthpiece pressure and reed displacement are recorded in an experiment with clarinet players to evaluate the influence of the player's actions on the selected parameters and on the sound. The results show that different combinations of tongue and blowing actions are used during performance. Portato and legato playing show constant blowing throughout the musical phrase, which varies according to the dynamic level. In portato, short tongue-reed interaction is used homogeneously among players and playing conditions. In staccato playing, where the tongue-reed contact is longer, the mouth pressure is reduced significantly between notes. Such a mouth-pressure decrease might be used to stop the note in slow staccato playing. It is hereby shown that when the note is stopped by the action of the tongue both the attack and release transients are shorter compared to the case where the vibration of the reed is stopped by a decrease of mouth pressure.

Sex determination mechanisms in the Calliphoridae (blow flies).

Science.gov (United States)

Scott, M J; Pimsler, M L; Tarone, A M

2014-01-01

The Calliphoridae or blow flies are a family of insects that occupy diverse habitats and perform important ecological roles, particularly the decomposition of animal remains. Some Calliphoridae species are also important in the forensic sciences, in agriculture (e.g. as livestock pests) and in medicine (e.g. maggot therapy). Calliphoridae provide striking examples in support of the hypothesis that sex determination regulatory gene hierarchies evolve in the reverse order, with the gene at the top being the most recently added. Unlike the model fly Drosophila melanogaster, where sex is determined by the number of X chromosomes, in the Australian sheep blow fly (Lucilia cuprina) sex is determined by a Y-linked male-determining gene (M). A different regulatory system appears to operate in the hairy maggot blow fly (Chrysomya rufifacies) where the maternal genotype determines sex. It is hypothesized that females heterozygous for a dominant female-determining factor (F/f) produce only female offspring and homozygous f/f females produce only sons. The bottom of the regulatory hierarchy appears to be the same in D. melanogaster and L. cuprina, with sex-specific splicing of doublesex transcripts being controlled by the female-specific Transformer (TRA) protein. We discuss a model that has been proposed for how tra transcripts are sex-specifically spliced in calliphorids, which is very different from D. melanogaster. © 2013 S. Karger AG, Basel.

Importance of sulfate radical anion formation and chemistry in heterogeneous OH oxidation of sodium methyl sulfate, the smallest organosulfate

Science.gov (United States)

Chung Kwong, Kai; Chim, Man Mei; Davies, James F.; Wilson, Kevin R.; Nin Chan, Man

2018-02-01

Organosulfates are important organosulfur compounds present in atmospheric particles. While the abundance, composition, and formation mechanisms of organosulfates have been extensively investigated, it remains unclear how they transform and evolve throughout their atmospheric lifetime. To acquire a fundamental understanding of how organosulfates chemically transform in the atmosphere, this work investigates the heterogeneous OH radical-initiated oxidation of sodium methyl sulfate (CH3SO4Na) droplets, the smallest organosulfate detected in atmospheric particles, using an aerosol flow tube reactor at a high relative humidity (RH) of 85 %. Aerosol mass spectra measured by a soft atmospheric pressure ionization source (direct analysis in real time, DART) coupled with a high-resolution mass spectrometer showed that neither functionalization nor fragmentation products are detected. Instead, the ion signal intensity of the bisulfate ion (HSO4-) has been found to increase significantly after OH oxidation. We postulate that sodium methyl sulfate tends to fragment into a formaldehyde (CH2O) and a sulfate radical anion (SO4 ṡ -) upon OH oxidation. The formaldehyde is likely partitioned back to the gas phase due to its high volatility. The sulfate radical anion, similar to OH radical, can abstract a hydrogen atom from neighboring sodium methyl sulfate to form the bisulfate ion, contributing to the secondary chemistry. Kinetic measurements show that the heterogeneous OH reaction rate constant, k, is (3.79 ± 0.19) × 10-13 cm3 molecule-1 s-1 with an effective OH uptake coefficient, γeff, of 0.17 ± 0.03. While about 40 % of sodium methyl sulfate is being oxidized at the maximum OH exposure (1.27 × 1012 molecule cm-3 s), only a 3 % decrease in particle diameter is observed. This can be attributed to a small fraction of particle mass lost via the formation and volatilization of formaldehyde. Overall, we firstly demonstrate that the heterogeneous OH oxidation of an

Blowing jets as a circulation flow control to enhancement the lift of wing or generated power of wind turbine

Directory of Open Access Journals (Sweden)

Alexandru DUMITRACHE

2014-06-01

Full Text Available The goal of this paper is to provide a numerical flow analysis based on RANS equations in two directions: the study of augmented high-lift system for a cross-section airfoil of a wing up to transonic regime and the circulation control implemented by tangentially blowing jet over a highly curved surface due to Coanda effect on a rotor blade for a wind turbine. This study were analyzed the performance, sensitivities and limitations of the circulation control method based on blowing jet for a fixed wing as well as for a rotating wing. Directions of future research are identified and discussed.

DNA methylation-based variation between human populations.

Science.gov (United States)

Kader, Farzeen; Ghai, Meenu

2017-02-01

Several studies have proved that DNA methylation affects regulation of gene expression and development. Epigenome-wide studies have reported variation in methylation patterns between populations, including Caucasians, non-Caucasians (Blacks), Hispanics, Arabs, and numerous populations of the African continent. Not only has DNA methylation differences shown to impact externally visible characteristics, but is also a potential biomarker for underlying racial health disparities between human populations. Ethnicity-related methylation differences set their mark during early embryonic development. Genetic variations, such as single-nucleotide polymorphisms and environmental factors, such as age, dietary folate, socioeconomic status, and smoking, impacts DNA methylation levels, which reciprocally impacts expression of phenotypes. Studies show that it is necessary to address these external influences when attempting to differentiate between populations since the relative impacts of these factors on the human methylome remain uncertain. The present review summarises several reported attempts to establish the contribution of differential DNA methylation to natural human variation, and shows that DNA methylation could represent new opportunities for risk stratification and prevention of several diseases amongst populations world-wide. Variation of methylation patterns between human populations is an exciting prospect which inspires further valuable research to apply the concept in routine medical and forensic casework. However, trans-generational inheritance needs to be quantified to decipher the proportion of variation contributed by DNA methylation. The future holds thorough evaluation of the epigenome to understand quantification, heritability, and the effect of DNA methylation on phenotypes. In addition, methylation profiling of the same ethnic groups across geographical locations will shed light on conserved methylation differences in populations.

Flap Gap Oscillatory Blowing on 2D and 2.5D Wing

Directory of Open Access Journals (Sweden)

Cătălin NAE

2009-12-01

Full Text Available Here we present preliminary results obtained in developing an active flow control system for highlift systems at advanced TRL level. The work is based on theoretical and experimental workperformed in AVERT EU FP6 project where the oscillatory flap gap blowing system was designedand tested on a INCAS F15 2D wing model. Pressure data and global loads have been recorded fora complex evaluation of the basic flow control mechanism. In 2.5D test cases this work has beenextended so that the proposed system may be selected as a mature technology in the JTI Clean Sky,Smart Fixed Wing Aircraft ITD. For this goal, new experimental setup was used and also updatedelectronics for the blowing system have been introduces. This was complemented by a newextension for the data acquisition system and visualization tools. Finally global correlations forbasic lift increments have been compared with the reference 2D case and analysed with respect tothe system efficiency.

On blow-up of solutions of the Kuramoto-Sivashinsky equation

International Nuclear Information System (INIS)

Pokhozhaev, S I

2008-01-01

The problem of the absence of global solutions of initial-boundary value problems for the Kuramoto-Sivashinsky equation is considered. Sufficient conditions for the absence of global solutions of the problems under consideration are obtained both for bounded and unbounded domains. These conditions imply a priori the blow-up of the solution of the corresponding initial-boundary value problem. The proof uses a generalization of the method of non-linear capacity based on the choice of asymptotically optimal test functions. Bibliography: 20 titles.

Estimating the Number of Eggs in Blow Fly (Diptera: Calliphoridae) Egg Masses Using Photographic Analysis.

Science.gov (United States)

Rosati, J Y; Pacheco, V A; Vankosky, M A; Vanlaerhoven, S L

2015-07-01

Little work has been done to quantify the number of eggs oviposited by blow flies (Diptera: Calliphoridae) in studies examining colonization behavior. Egg counting methods currently available are time-consuming and destructive. This study used ImageJ software and analysis of covariance to relate the volume of egg masses to the number of eggs laid by three different blow fly species: Lucilia sericata (Meigen), Phormia regina (Meigen), and Chrysomya rufifacies (Macquart). Egg mass volume, species, and the interaction of species and egg mass volume all affected the number of blow fly eggs deposited in egg masses. Both species identity and egg mass volume are important when predicting egg number, as such a single regression equation cannot be used to estimate egg number for these three species. Therefore, simple linear regression equations were determined for each species. The volume of individual eggs was incorporated into the model, yet differences between species were observed, suggesting that the orientation of the eggs oviposited by multiple conspecific females within egg masses influences egg estimates. Based on our results, we expect that imaging software can be used for other blow fly species, as well as other insect species; however, equations specific to each species must be developed. This study describes an important tool for quantifying egg deposition in a nondestructive manner, which is important in studying the colonization behavior and life history of insects of ecological and forensic importance. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Analysis of Tonguing and Blowing Actions During Clarinet Performance

Directory of Open Access Journals (Sweden)

Montserrat Pàmies-Vilà

2018-04-01

Full Text Available Articulation on the clarinet is achieved by a combination of precise actions taking place inside the player's mouth. With the aim to analyse the effects of tonguing and blowing actions during playing, several physical variables are measured and parameters related to articulation are studied. Mouth pressure, mouthpiece pressure and reed displacement are recorded in an experiment with clarinet players to evaluate the influence of the player's actions on the selected parameters and on the sound. The results show that different combinations of tongue and blowing actions are used during performance. Portato and legato playing show constant blowing throughout the musical phrase, which varies according to the dynamic level. In portato, short tongue-reed interaction is used homogeneously among players and playing conditions. In staccato playing, where the tongue-reed contact is longer, the mouth pressure is reduced significantly between notes. Such a mouth-pressure decrease might be used to stop the note in slow staccato playing. It is hereby shown that when the note is stopped by the action of the tongue both the attack and release transients are shorter compared to the case where the vibration of the reed is stopped by a decrease of mouth pressure.

The effect of blow flies (Diptera: Calliphoridae) on the size and weight of mangos (Mangifera indica L.)

Science.gov (United States)

Naqqash, Muhammad Nadir; Saeed, Qamar; Ghouri, Fozia

2016-01-01

Background: Pollination has a great effect on the yield of fruit trees. Blow flies are considered as an effective pollinator compared to hand pollination in fruit orchards. Therefore, this study was designed to evaluate the effect of different pollination methods in mango orchards. Methodology: The impact of pollination on quantity and quality of mango yield by blow flies was estimated by using three treatments, i.e., open pollinated trees, trees were covered by a net in the presence of blow flies for pollination, and trees were covered with a net but without insects. Results: The maximum number of flowers was recorded in irregular types of inflorescence, i.e., 434.80 flowers/inflorescence. Fruit setting (bud) was higher in open pollinated mango trees (i.e. 37.00/inflorescence) than enclosed pollination by blow flies (i.e. 22.34/inflorescence). The size of the mango fruit was the highest (5.06 mm) in open pollinated tree than those pollinated by blow flies (3.93 mm) and followed by without any pollinator (3.18 mm) at marble stage. We found that the maximum weight of mango fruit (201.19 g) was in open pollinated trees. Discussion: The results demonstrated that blow flies can be used as effective mango pollinators along with other flies and bees. The blow flies have shown a positive impact on the quality and quantity of mango. This study will be helpful in future and also applicable at farm level to use blow flies as pollinators that are cheap and easy to rear. PMID:27441107

Intelligent soot blowing for boilers co-firing waste and biofuel; Behovsstyrd sotblaasning foer bio- och avfallseldade pannor - inventering och teknikval

Energy Technology Data Exchange (ETDEWEB)

Kjoerk, Anders [S.E.P. Scandinavian Energy Project AB, Goeteborg (Sweden)

2003-11-01

To achieve optimum boiler operation and performance it is necessary to control the cleanliness and limit the fouling of the heat transfer surfaces. Historically, the heating surfaces in boilers firing biomass and waste are cleaned by steamblowing soot blowers on scheduled time-based and/or parameter-based intervals or by mechanical methods. With the advent of fuel switching strategies and use of mixed-in industrial waste, the control of heating surface cleanliness has become even more crucial for these boilers. Scheduled and/or parameter based approaches do not easily address operational changes. As plant operators push to achieve greater efficiency and performance from their boilers, the ability to more effectively optimize cleaning cycles has become increasingly important. If soot blowing is done only when and where it is required rather than at set intervals, unit performance can be maintained with reduced blowing, which saves steam. Two philosophical approaches toward intelligent soot blowing are currently being applied in the industry. One incorporates heat flux monitors to gather real-time heat transfer data to determine which areas of the furnace need cleaning. The other uses indirect temperature and pressure data to infer locations where soot blowing is needed, and is mainly applied for controlling soot blowers in the superheater and economiser area. The heat flux monitors are so fare used for control of the furnace wall blowers. A system using temperature, pressure and flow data does not require much additional instrumentation as compared with what is available on a standard boiler. However the blower control system must be capable of operating blowers on an individual basis. For advanced options it should also be possible to adjust the speed of the soot blower and the steam pressure. The control program could be more or less advanced but the ability to model heating surfaces and determine real-time cleanliness is crucial for an intelligent soot blowing

Fledging success is a poor indicator of the effects of bird blow flies on ovenbird survival

Science.gov (United States)

Peterson, Sean M.; Streby, Henry M.; Kapfer, Paul M.

2009-01-01

Infestations of bird blow flies (Protocalliphora spp. and Trypocalliphora braueri) have various negative effects on the condition of nestling birds. In the absence of other stressors such as inclement weather, however, infestation alone rarely reduces fledging success. Previous studies have documented effects of blow flies on nestling condition and fledging success. Without information regarding fledgling survival, the full effect of blow-fly infestation remains unclear. To fully investigate the effect of blow-fly infestation on reproductive success of the Ovenbird (Seiurus aurocapilla), we monitored infested and non-infested nests and monitored fledglings from each by using radio telemetry. Blow flies did not affect birds during the nestling period, as brood size, mean nestling mass, fledging success, and time to fledging in infested and non-infested nests were no different. Fledgling survival and minimum distance traveled the first day after fledging, however, were significantly lower for infected fledglings than for those that were not infected. We conclude that the stress of the early fledgling period combined with recent or concurrent blow-fly infection increases mortality in young Oven-birds. Our results demonstrate the importance of including the post-fledging period in investigations of the effects of ectoparasitic infestations on birds.

Destruction of C2H4O2 isomers in ice-phase by X-rays: Implication on the abundance of acetic acid and methyl formate in the interstellar medium

Science.gov (United States)

Rachid, Marina G.; Faquine, Karla; Pilling, S.

2017-12-01

The C2H4O2 isomers methyl formate (HCOOCH3), acetic acid (CH3COOH) and glycoaldehyde (HOCH2CHO) have been detected in molecular clouds in the interstellar medium, as well as, hot cores, hot corinos and around protostellar objects. However, their abundances are very different, being methyl formate more abundant than the other two isomers. This fact may be related to the different destruction by ionizing radiation of these molecules. The goal of this work is experimentally study the photodissociation processes of methyl formate and acetic acid ices when exposed to broadband soft X-ray from 6 up to 2000 eV. The experiments were performed coupled to the SGM beamline in the Brazilian Synchrotron Light Source (LNLS/CNPEM) at Campinas, Brazil. The simulated astrophysical ices (12 K) were monitored throughout the experiment using infrared vibrational spectroscopy (FTIR). The analysis of processed ices allowed the determination of the effective destruction cross sections of the parent molecules as well as the effective formation cross section of daughter molecular species such as CO, CO2, H2O, CH4 and H2CO (only for methyl formate) and the hydrocarbons C2H6 and C5H10 (only for acetic acid). The half-lives of molecules at ices toward young stellar objects (YSOs) and inside molecular clouds (e.g. Sgr B2 and W51) due to the presence of incoming soft X-rays were estimated. We determined the effective formation rate and the branching ratios for assigned daughter species after the establishment of a chemical equilibrium. The main product from photodissociation of both methyl formate and acetic acid is CO, that can be formed by recombination of ions, formed during the photodissociation, in the ice surface. The relative abundance between methyl formate and acetic acid (NCH3COOH/NHCOOCH3) in different astronomical scenarios and their column density evolution in the presence of X-rays were calculated. Our results suggest that such radiation field can be one of the factors that

Mobility and molecular ions of dimethyl methyl phosphonate, methyl salicylate and acetone

Science.gov (United States)

Nowak, D. M.

1983-06-01

The mobilities of positive and negative reactant ions are reported for (H2O)nH(+); (H2O)2O2 and (H2O)2CO3(-) ion clusters. The formation of positive DMMP monomer and dimer is reported, and equilbria molecular reactions are reported. Acetone is reported as forming a dimer at 81 ppb with a reduced mobility (K sub o) of 1.82, Methyl salicylate is shown to form a protonated and hydrated positive monomer. Mixtures of DMMP and methyl salicylate with acetone showed a substantial change in DMMP ion clustering and little or no change in the methyl salicylate mobility spectra. Negative ions were not observed for DMMP, methyl salicylate, acetone and the mixtures under the conditions reported.

"Blow-torch phenomenon" during laser assisted excision of a thyroglossal cyst at the base of the tongue

Directory of Open Access Journals (Sweden)

Anitha G Bhat

2012-01-01

Full Text Available We report a case of blow-torch phenomenon encountered during diode laser assisted excision of a thyroglossal cyst in a child. This is first such case report from India and highlights an unusual complication which anesthesiologists need to be aware of due to the increasing use of operative laser.

Potential of anticlostridial Lactobacillus isolated from cheese to prevent blowing defects in semihard cheese

DEFF Research Database (Denmark)

Christiansen, Pia; Vogensen,, F. K.; Nielsen, E. W

2010-01-01

Five anticlostridial Lactobacillus strains isolated from cheese were selected for a mixed adjunct culture. Cheese with the mixed adjunct culture (experimental) and without (control) was made in triplicate and ripened as vacuum-packed and surface-ripened cheese. Cheese gross composition was similar....... Excessive gas formation occurred only in control cheeses. In contrast to control cheeses, the experimental cheeses were dominated by the added adjunct Lactobacillus strains (repetitive-PCR). Casein breakdown was not influenced, however, the total amount of amino acids and pH was slightly lower...... in the experimental cheeses. Anticlostridial nonstarter Lactobacillus strains have potential as protective adjunct cultures against blowing defects in cheese....

Computation and measurement of air temperature distribution of an industrial melt blowing die

Directory of Open Access Journals (Sweden)

Wu Li-Li

2014-01-01

Full Text Available The air flow field of the dual slot die on an HDF-6D melt blowing non-woven equipment is computed numerically. A temperature measurement system is built to measure air temperatures. The computation results tally with the measured results proving the correctness of the computation. The results have great valuable significance in the actual melt blowing production.

Exploring DNA methylation changes in promoter, intragenic, and intergenic regions as early and late events in breast cancer formation

International Nuclear Information System (INIS)

Rauscher, Garth H.; Kresovich, Jacob K.; Poulin, Matthew; Yan, Liying; Macias, Virgilia; Mahmoud, Abeer M.; Al-Alem, Umaima; Kajdacsy-Balla, Andre; Wiley, Elizabeth L.; Tonetti, Debra; Ehrlich, Melanie

2015-01-01

Breast cancer formation is associated with frequent changes in DNA methylation but the extent of very early alterations in DNA methylation and the biological significance of cancer-associated epigenetic changes need further elucidation. Pyrosequencing was done on bisulfite-treated DNA from formalin-fixed, paraffin-embedded sections containing invasive tumor and paired samples of histologically normal tissue adjacent to the cancers as well as control reduction mammoplasty samples from unaffected women. The DNA regions studied were promoters (BRCA1, CD44, ESR1, GSTM2, GSTP1, MAGEA1, MSI1, NFE2L3, RASSF1A, RUNX3, SIX3 and TFF1), far-upstream regions (EN1, PAX3, PITX2, and SGK1), introns (APC, EGFR, LHX2, RFX1 and SOX9) and the LINE-1 and satellite 2 DNA repeats. These choices were based upon previous literature or publicly available DNA methylome profiles. The percent methylation was averaged across neighboring CpG sites. Most of the assayed gene regions displayed hypermethylation in cancer vs. adjacent tissue but the TFF1 and MAGEA1 regions were significantly hypomethylated (p ≤0.001). Importantly, six of the 16 regions examined in a large collection of patients (105 – 129) and in 15-18 reduction mammoplasty samples were already aberrantly methylated in adjacent, histologically normal tissue vs. non-cancerous mammoplasty samples (p ≤0.01). In addition, examination of transcriptome and DNA methylation databases indicated that methylation at three non-promoter regions (far-upstream EN1 and PITX2 and intronic LHX2) was associated with higher gene expression, unlike the inverse associations between cancer DNA hypermethylation and cancer-altered gene expression usually reported. These three non-promoter regions also exhibited normal tissue-specific hypermethylation positively associated with differentiation-related gene expression (in muscle progenitor cells vs. many other types of normal cells). The importance of considering the exact DNA region analyzed and the

Microarray-based DNA methylation study of Ewing's sarcoma of the bone.

Science.gov (United States)

Park, Hye-Rim; Jung, Woon-Won; Kim, Hyun-Sook; Park, Yong-Koo

2014-10-01

Alterations in DNA methylation patterns are a hallmark of malignancy. However, the majority of epigenetic studies of Ewing's sarcoma have focused on the analysis of only a few candidate genes. Comprehensive studies are thus lacking and are required. The aim of the present study was to identify novel methylation markers in Ewing's sarcoma using microarray analysis. The current study reports the microarray-based DNA methylation study of 1,505 CpG sites of 807 cancer-related genes from 69 Ewing's sarcoma samples. The Illumina GoldenGate Methylation Cancer Panel I microarray was used, and with the appropriate controls (n=14), a total of 92 hypermethylated genes were identified in the Ewing's sarcoma samples. The majority of the hypermethylated genes were associated with cell adhesion, cell regulation, development and signal transduction. The overall methylation mean values were compared between patients who survived and those that did not. The overall methylation mean was significantly higher in the patients who did not survive (0.25±0.03) than in those who did (0.22±0.05) (P=0.0322). However, the overall methylation mean was not found to significantly correlate with age, gender or tumor location. GDF10 , OSM , APC and HOXA11 were the most significant differentially-methylated genes, however, their methylation levels were not found to significantly correlate with the survival rate. The DNA methylation profile of Ewing's sarcoma was characterized and 92 genes that were significantly hypermethylated were detected. A trend towards a more aggressive behavior was identified in the methylated group. The results of this study indicated that methylation may be significant in the development of Ewing's sarcoma.

Local-in-space blow-up criteria for a class of nonlinear dispersive wave equations

Science.gov (United States)

Novruzov, Emil

2017-11-01

This paper is concerned with blow-up phenomena for the nonlinear dispersive wave equation on the real line, ut -uxxt +[ f (u) ] x -[ f (u) ] xxx +[ g (u) + f″/(u) 2 ux2 ] x = 0 that includes the Camassa-Holm equation as well as the hyperelastic-rod wave equation (f (u) = ku2 / 2 and g (u) = (3 - k) u2 / 2) as special cases. We establish some a local-in-space blow-up criterion (i.e., a criterion involving only the properties of the data u0 in a neighborhood of a single point) simplifying and precising earlier blow-up criteria for this equation.

NAFTA Students'Whistle-blowing Perceptions: A Case of Sexual Harassme

Directory of Open Access Journals (Sweden)

Peek, L., M

2005-07-01

Full Text Available Whistle-blowing mechanisms in the U.S. have gained more prominence as an element of legal compliance and antifraud programs. Sexual harassment is a significant business risk in terms of financial costs and the loss of reputation. lt is important for corporations to develop sexual harassment policies and to provide mechanisms for employees toreport sexual harassment behaviors to upper level management. This paper reports on business students' responses to a possible Sexual Harassment scenario from Arthur Andersen's Business Ethics Program and the actions that the characters in the video should take in terms of whistle-blowing. l fall 2004,78 students from two U.S. universities and one Mexican and one Canadian university participated in the prolect as part of the NAFIA Challenges of Accounting and Buslness Sysfems Granf funded by the United States Department of Education Fund for the lmprovement of PostSecondary Education (FIPSE, Human Resources Develópment Canada (HRDC, and Mexico's Secretaría de Educación Pública (SEP. Students from the three NAFTA countries were shown the vignette and asked to respond to a pre-questionnaire concerning the characters' behaviors and possible actions. The students were then asked to discuss the situation and write a reoort from the points of view of the three characters in the vigneite and also to find a copy of an organizations' sexual harassment policy from the Internet. At the end of the project the students responded to a post questionnaire. The students were asked to consider whether the characters should report the possible harasser totheir supervisor, and thus engage in whistle-blowing behavior. Hypotheses are formulated for the three NAFTA'countries based on Hofstede's cultural dimensions and comparisons are made based on overall responses to the pre-and posfquestionnaire. There were significant differences, but in some cases not in the direction expected. Gender differences are also explored, but

Nanofiber production of poly (vinylidene fluoride) / hexaferrite, obtained by Blow Spinning Technique; Producao de nanofibras de poli (fluoreto de vinilideno)/hexaferrita, obtidos pela tecnica Blow Spinning

Energy Technology Data Exchange (ETDEWEB)

Dias, G.C.; Zadorosny, L.; Malmonge, J.A.; Malmonge, L.F., E-mail: gabriel.fct@gmail.com [Universidade Estadual Paulista Julio de Mesquita Filho (UNESP), Ilha Solteira, SP (Brazil)

2014-07-01

In this study, fibrous films of poly (vinylidene fluoride) - PVDF with barium hexaferrite particles were obtained by Solution Blow Spinning technique. In such technique, the polymer solution is injected through an inner nozzle which experiences the action of an accelerated flux of gas that drags and stretches the jet solution forming the nanofibers. The films were obtained from solutions of PVDF/DMF (30% w/v), which was incorporated into barium hexaferrite particles in proportions of 1, 3 and 5% (w / w). The results of the micrographs revealed the formation of a fibrous film with good dispersion of the particles. Xray analyzes showed the predominance of the β crystalline phase of PVDF. The increase of the amount of particles induces the appearance of a characteristic peak of PVDF. EDX measurements confirmed the presence of particles in the films. (author)

Importance of sulfate radical anion formation and chemistry in heterogeneous OH oxidation of sodium methyl sulfate, the smallest organosulfate

Directory of Open Access Journals (Sweden)

K. C. Kwong

2018-02-01

Full Text Available Organosulfates are important organosulfur compounds present in atmospheric particles. While the abundance, composition, and formation mechanisms of organosulfates have been extensively investigated, it remains unclear how they transform and evolve throughout their atmospheric lifetime. To acquire a fundamental understanding of how organosulfates chemically transform in the atmosphere, this work investigates the heterogeneous OH radical-initiated oxidation of sodium methyl sulfate (CH3SO4Na droplets, the smallest organosulfate detected in atmospheric particles, using an aerosol flow tube reactor at a high relative humidity (RH of 85 %. Aerosol mass spectra measured by a soft atmospheric pressure ionization source (direct analysis in real time, DART coupled with a high-resolution mass spectrometer showed that neither functionalization nor fragmentation products are detected. Instead, the ion signal intensity of the bisulfate ion (HSO4− has been found to increase significantly after OH oxidation. We postulate that sodium methyl sulfate tends to fragment into a formaldehyde (CH2O and a sulfate radical anion (SO4 ⋅ − upon OH oxidation. The formaldehyde is likely partitioned back to the gas phase due to its high volatility. The sulfate radical anion, similar to OH radical, can abstract a hydrogen atom from neighboring sodium methyl sulfate to form the bisulfate ion, contributing to the secondary chemistry. Kinetic measurements show that the heterogeneous OH reaction rate constant, k, is (3.79 ± 0.19  ×  10−13 cm3 molecule−1 s−1 with an effective OH uptake coefficient, γeff, of 0.17 ± 0.03. While about 40 % of sodium methyl sulfate is being oxidized at the maximum OH exposure (1.27  ×  1012 molecule cm−3 s, only a 3 % decrease in particle diameter is observed. This can be attributed to a small fraction of particle mass lost via the formation and volatilization of formaldehyde. Overall, we

Reaction products from N-methyl-N-nitrosourea and deoxyribonucleic acid containing thymidine residues. Synthesis and identification of a new methylation product, O4-methyl-thymidine

Science.gov (United States)

Lawley, P. D.; Orr, D. J.; Shah, S. A.; Farmer, P. B.; Jarman, M.

1973-01-01

1. DNA was treated with N-methyl-N-nitrosourea at pH7–8, 37°C, degraded to yield 3- and 7-methylpurines and deoxyribonucleosides and the reaction products were separated by chromatography on ion-exchange resins. The following methods for identification and determination of products were used: with unlabelled N-methyl-N-nitrosourea, u.v. absorption; use of methyl-14C-labelled N-methyl-N-nitrosourea and use of [14C]thymine-labelled DNA. 2. The synthesis of O4-methylthymidine and its identification by u.v. and mass spectroscopy are reported. 3. 3-Methylthymidine and O4-methylthymidine were found as methylation products from N-methyl-N-nitrosourea with thymidine and with DNA, in relatively small yields. Unidentified products containing thymine were found in enzymic digests of N-methyl-N-nitrosourea-treated DNA, which may be phosphotriesters. 4. The possible role of formation of methylthymines in mutagenesis by N-methyl-N-nitrosourea is discussed. PMID:4798180

BLOW.MOD2: program for a vessel depressurization calculation with the contribution of structures

International Nuclear Information System (INIS)

Doval, A.

1990-01-01

The BLOW.MOD2 program developed to calculate pressure vessels' depressurization is presented, considering heat contribution of the structures. The results are opposite to those obtained from other more complex numerical models, being the comparison extremely satisfactory. BLOW.MOD2 is a software of the 'Systems Sub-Branch', INVAP S.E. (Author) [es

A nonparametric Bayesian approach for clustering bisulfate-based DNA methylation profiles.

Science.gov (United States)

Zhang, Lin; Meng, Jia; Liu, Hui; Huang, Yufei

2012-01-01

DNA methylation occurs in the context of a CpG dinucleotide. It is an important epigenetic modification, which can be inherited through cell division. The two major types of methylation include hypomethylation and hypermethylation. Unique methylation patterns have been shown to exist in diseases including various types of cancer. DNA methylation analysis promises to become a powerful tool in cancer diagnosis, treatment and prognostication. Large-scale methylation arrays are now available for studying methylation genome-wide. The Illumina methylation platform simultaneously measures cytosine methylation at more than 1500 CpG sites associated with over 800 cancer-related genes. Cluster analysis is often used to identify DNA methylation subgroups for prognosis and diagnosis. However, due to the unique non-Gaussian characteristics, traditional clustering methods may not be appropriate for DNA and methylation data, and the determination of optimal cluster number is still problematic. A Dirichlet process beta mixture model (DPBMM) is proposed that models the DNA methylation expressions as an infinite number of beta mixture distribution. The model allows automatic learning of the relevant parameters such as the cluster mixing proportion, the parameters of beta distribution for each cluster, and especially the number of potential clusters. Since the model is high dimensional and analytically intractable, we proposed a Gibbs sampling "no-gaps" solution for computing the posterior distributions, hence the estimates of the parameters. The proposed algorithm was tested on simulated data as well as methylation data from 55 Glioblastoma multiform (GBM) brain tissue samples. To reduce the computational burden due to the high data dimensionality, a dimension reduction method is adopted. The two GBM clusters yielded by DPBMM are based on data of different number of loci (P-value < 0.1), while hierarchical clustering cannot yield statistically significant clusters.

DNA methylation based biomarkers: Practical considerations and applications

DEFF Research Database (Denmark)

Nielsen, Helene Myrtue; How Kit, Alexandre; Tost, Jorg

2012-01-01

of biochemical molecules such as proteins, DNA, RNA or lipids, whereby protein biomarkers have been the most extensively studied and used, notably in blood-based protein quantification tests or immunohistochemistry. The rise of interest in epigenetic mechanisms has allowed the identification of a new type...... of biomarker, DNA methylation, which is of great potential for many applications. This stable and heritable covalent modification mostly affects cytosines in the context of a CpG dinucleotide in humans. It can be detected and quantified by a number of technologies including genome-wide screening methods...... as well as locus- or gene-specific high-resolution analysis in different types of samples such as frozen tissues and FFPE samples, but also in body fluids such as urine, plasma, and serum obtained through non-invasive procedures. In some cases, DNA methylation based biomarkers have proven to be more...

Quantification of 5-methyl-2'-deoxycytidine in the DNA.

Science.gov (United States)

Giel-Pietraszuk, Małgorzata; Insińska-Rak, Małgorzata; Golczak, Anna; Sikorski, Marek; Barciszewska, Mirosława; Barciszewski, Jan

2015-01-01

Methylation at position 5 of cytosine (Cyt) at the CpG sequences leading to formation of 5-methyl-cytosine (m(5)Cyt) is an important element of epigenetic regulation of gene expression. Modification of the normal methylation pattern, unique to each organism, leads to the development of pathological processes and diseases, including cancer. Therefore, quantification of the DNA methylation and analysis of changes in the methylation pattern is very important from a practical point of view and can be used for diagnostic purposes, as well as monitoring of the treatment progress. In this paper we present a new method for quantification of 5-methyl-2'deoxycytidine (m(5)C) in the DNA. The technique is based on conversion of m(5)C into fluorescent 3,N(4)-etheno-5-methyl-2'deoxycytidine (εm(5)C) and its identification by reversed-phase high-performance liquid chromatography (RP-HPLC). The assay was used to evaluate m(5)C concentration in DNA of calf thymus and peripheral blood of cows bred under different conditions. This approach can be applied for measuring of 5-methylcytosine in cellular DNA from different cells and tissues.

Stratigraphy of the Kapalga Formation north of Pine Creek and its relationship to base metal mineralization

International Nuclear Information System (INIS)

Goulevitch, J.

1980-01-01

The lithology, stratigraphy and mineralization of the Kapalga Formation (South Alligator Group) is described from the Margaret Syncline in the Pine Creek area of the Northern Territory of Australia. An interdigitation of carbonaceous siltstones and mudstones, chert, ashstones and tuffaceous chert, greywacke, siltstone, mudstone and minor banded iron formation (b.i.f.) characterises the Formation. These rocks define a vertical facies transition between low energy sediments of the underlying Koolpin Formation, and high energy sediments of the overlying Burrell Creek Formation. This transition is interlayered with numerous ashstone-tuffaceous chert horizons which were deposited during the waning stage of Gerowie Tuff sedimentation. The boundary between the Kapalga Formation of the South Alligator Group and the Burrell Creek Formation of the Finniss River Group is strictly conformable in this part of the Pine Creek 'Geosyncline'. Relict devitrified shards have been recognised in the Gerowie Tuff in the Margaret Syncline and these observations along with whole-rock chemical analyses conclusively support claims by previous investigators that these rocks are volcanic derivatives. Base metal mineralization at Iron Blow and Mt. Bonnie occurs as massive, stratiform, sulphide-silicate-carbonate lodes. The deposits are at the same stratigraphic level towards the base of the Kapalga Formation and minor stratification parallel with bedding has been observed. These features, and the association of the lodes with mud-flow breccias, lead to the conclusion that the lodes are syngenetic in origin. Thermochemical consideration of the sulphide assemblages together with the temporal relationship between the mineralization and Gerowie Tuff point to diagenetic devitrification of the underlying tuffaceous rocks as the source of the mineralization. Recent publications of experimental data from reaction of seawater and volcanic glass provide information which supports this thesis, and

Proteus mirabilis interkingdom swarming signals attract blow flies

Science.gov (United States)

Flies transport specific bacteria with their larvae which provides a wider range of nutrients for those bacteria. Our hypothesis was that this symbiotic interaction may depend on interkingdom signaling. We obtained Proteus mirabilis from the salivary glands of the blow fly Lucilia sericat. This s...

Resection and primary anastomosis with or without modified blow-hole colostomy for sigmoid volvulus

Science.gov (United States)

Coban, Sacid; Yilmaz, Mehmet; Terzi, Alpaslan; Yildiz, Fahrettin; Ozgor, Dincer; Ara, Cengiz; Yologlu, Saim; Kirimlioglu, Vedat

2008-01-01

AIM: To evaluate the efficacy of resection and primary anastomosis (RPA) and RPA with modified blow-hole colostomy for sigmoid volvulus. METHODS: From March 2000 to September 2007, 77 patients with acute sigmoid volvulus were treated. A total of 47 patients underwent RPA or RPA with modified blow-hole colostomy. Twenty-five patients received RPA (Group A), and the remaining 22 patients had RPA with modified blow-hole colostomy (Group B). The clinical course and postoperative complications of the two groups were compared. RESULTS: The mean hospital stay, wound infection and mortality did not differ significantly between the groups. Superficial wound infection rate was higher in group A (32% vs 9.1%). Anastomotic leakage was observed only in group A, with a rate of 6.3%. The difference was numerically impressive but was statistically not significant. CONCLUSION: RPA with modified blow-hole colostomy provides satisfactory results. It is easy to perform and may become a method of choice in patients with sigmoid volvulus. Further studies are required to further establish its role in the treatment of sigmoid volvulus. PMID:18810779

Humidification of Blow-By Oxygen During Recovery of Postoperative Pediatric Patients: One Unit's Journey.

Science.gov (United States)

Donahue, Suzanne; DiBlasi, Robert M; Thomas, Karen

2018-02-02

To examine the practice of nebulizer cool mist blow-by oxygen administered to spontaneously breathing postanesthesia care unit (PACU) pediatric patients during Phase one recovery. Existing evidence was evaluated. Informal benchmarking documented practices in peer organizations. An in vitro study was then conducted to simulate clinical practice and determine depth and amount of airway humidity delivery with blow-by oxygen. Informal benchmarking information was obtained by telephone interview. Using a three-dimensional printed simulation model of the head connected to a breathing lung simulator, depth and amount of moisture delivery in the respiratory tree were measured. Evidence specific to PACU administration of cool mist blow-by oxygen was limited. Informal benchmarking revealed that routine cool mist oxygenated blow-by administration was not widely practiced. The laboratory experiment revealed minimal moisture reaching the mid-tracheal area of the simulated airway model. Routine use of oxygenated cool mist in spontaneously breathing pediatric PACU patients is not supported. Copyright © 2017 American Society of PeriAnesthesia Nurses. Published by Elsevier Inc. All rights reserved.

Pros and cons of methylation-based enrichment methods for ancient DNA

Science.gov (United States)

Seguin-Orlando, Andaine; Gamba, Cristina; Sarkissian, Clio Der; Ermini, Luca; Louvel, Guillaume; Boulygina, Eugenia; Sokolov, Alexey; Nedoluzhko, Artem; Lorenzen, Eline D.; Lopez, Patricio; McDonald, H. Gregory; Scott, Eric; Tikhonov, Alexei; Stafford,, Thomas W.; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A. S.; Shapiro, Beth; Willerslev, Eske; Prokhortchouk, Egor; Orlando, Ludovic

2015-01-01

The recent discovery that DNA methylation survives in fossil material provides an opportunity for novel molecular approaches in palaeogenomics. Here, we apply to ancient DNA extracts the probe-independent Methylated Binding Domains (MBD)-based enrichment method, which targets DNA molecules containing methylated CpGs. Using remains of a Palaeo-Eskimo Saqqaq individual, woolly mammoths, polar bears and two equine species, we confirm that DNA methylation survives in a variety of tissues, environmental contexts and over a large temporal range (4,000 to over 45,000 years before present). MBD enrichment, however, appears principally biased towards the recovery of CpG-rich and long DNA templates and is limited by the fast post-mortem cytosine deamination rates of methylated epialleles. This method, thus, appears only appropriate for the analysis of ancient methylomes from very well preserved samples, where both DNA fragmentation and deamination have been limited. This work represents an essential step toward the characterization of ancient methylation signatures, which will help understanding the role of epigenetic changes in past environmental and cultural transitions. PMID:26134828

Clinical investigation of CT-guided ozone-blowing and fumigation ...

African Journals Online (AJOL)

Clinical investigation of CT-guided ozone-blowing and fumigation therapy for the chronic ... African Journal of Biotechnology ... In control group, seven patients were completely cured in 45 days after being treated by traditional surgery.

Blow-up Mechanism of Classical Solutions to Quasilinear Hyperbolic Systems in the Critical Case

Institute of Scientific and Technical Information of China (English)

无

2006-01-01

This paper deals with the blow-up phenomenon, particularly, the geometric blow-up mechanism, of classical solutions to the Cauchy problem for quasilinear hyperbolic systems in the critical case. We prove that it is still the envelope of the same family of characteristics which yields the blowup of classical solutions to the Cauchy problem in the critical case.

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring.

Science.gov (United States)

Apprill, Amy; Miller, Carolyn A; Moore, Michael J; Durban, John W; Fearnbach, Holly; Barrett-Lennard, Lance G

2017-01-01

The pulmonary system is a common site for bacterial infections in cetaceans, but very little is known about their respiratory microbiome. We used a small, unmanned hexacopter to collect exhaled breath condensate (blow) from two geographically distinct populations of apparently healthy humpback whales ( Megaptera novaeangliae ), sampled in the Massachusetts coastal waters off Cape Cod ( n = 17) and coastal waters around Vancouver Island ( n = 9). Bacterial and archaeal small-subunit rRNA genes were amplified and sequenced from blow samples, including many of sparse volume, as well as seawater and other controls, to characterize the associated microbial community. The blow microbiomes were distinct from the seawater microbiomes and included 25 phylogenetically diverse bacteria common to all sampled whales. This core assemblage comprised on average 36% of the microbiome, making it one of the more consistent animal microbiomes studied to date. The closest phylogenetic relatives of 20 of these core microbes were previously detected in marine mammals, suggesting that this core microbiome assemblage is specialized for marine mammals and may indicate a healthy, noninfected pulmonary system. Pathogen screening was conducted on the microbiomes at the genus level, which showed that all blow and few seawater microbiomes contained relatives of bacterial pathogens; no known cetacean respiratory pathogens were detected in the blow. Overall, the discovery of a shared large core microbiome in humpback whales is an important advancement for health and disease monitoring of this species and of other large whales. IMPORTANCE The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above humpback whales from two populations, capture their exhaled breath (blow), and examine the associated microbiome. In the

Identification of Differentially Methylated Sites with Weak Methylation Effects

Directory of Open Access Journals (Sweden)

Hong Tran

2018-02-01

Full Text Available Deoxyribonucleic acid (DNA methylation is an epigenetic alteration crucial for regulating stress responses. Identifying large-scale DNA methylation at single nucleotide resolution is made possible by whole genome bisulfite sequencing. An essential task following the generation of bisulfite sequencing data is to detect differentially methylated cytosines (DMCs among treatments. Most statistical methods for DMC detection do not consider the dependency of methylation patterns across the genome, thus possibly inflating type I error. Furthermore, small sample sizes and weak methylation effects among different phenotype categories make it difficult for these statistical methods to accurately detect DMCs. To address these issues, the wavelet-based functional mixed model (WFMM was introduced to detect DMCs. To further examine the performance of WFMM in detecting weak differential methylation events, we used both simulated and empirical data and compare WFMM performance to a popular DMC detection tool methylKit. Analyses of simulated data that replicated the effects of the herbicide glyphosate on DNA methylation in Arabidopsis thaliana show that WFMM results in higher sensitivity and specificity in detecting DMCs compared to methylKit, especially when the methylation differences among phenotype groups are small. Moreover, the performance of WFMM is robust with respect to small sample sizes, making it particularly attractive considering the current high costs of bisulfite sequencing. Analysis of empirical Arabidopsis thaliana data under varying glyphosate dosages, and the analysis of monozygotic (MZ twins who have different pain sensitivities—both datasets have weak methylation effects of <1%—show that WFMM can identify more relevant DMCs related to the phenotype of interest than methylKit. Differentially methylated regions (DMRs are genomic regions with different DNA methylation status across biological samples. DMRs and DMCs are essentially the same

Methylation-Sensitive Amplification Length Polymorphism (MS-AFLP) Microarrays for Epigenetic Analysis of Human Genomes.

Science.gov (United States)

Alonso, Sergio; Suzuki, Koichi; Yamamoto, Fumiichiro; Perucho, Manuel

2018-01-01

Somatic, and in a minor scale also germ line, epigenetic aberrations are fundamental to carcinogenesis, cancer progression, and tumor phenotype. DNA methylation is the most extensively studied and arguably the best understood epigenetic mechanisms that become altered in cancer. Both somatic loss of methylation (hypomethylation) and gain of methylation (hypermethylation) are found in the genome of malignant cells. In general, the cancer cell epigenome is globally hypomethylated, while some regions-typically gene-associated CpG islands-become hypermethylated. Given the profound impact that DNA methylation exerts on the transcriptional profile and genomic stability of cancer cells, its characterization is essential to fully understand the complexity of cancer biology, improve tumor classification, and ultimately advance cancer patient management and treatment. A plethora of methods have been devised to analyze and quantify DNA methylation alterations. Several of the early-developed methods relied on the use of methylation-sensitive restriction enzymes, whose activity depends on the methylation status of their recognition sequences. Among these techniques, methylation-sensitive amplification length polymorphism (MS-AFLP) was developed in the early 2000s, and successfully adapted from its original gel electrophoresis fingerprinting format to a microarray format that notably increased its throughput and allowed the quantification of the methylation changes. This array-based platform interrogates over 9500 independent loci putatively amplified by the MS-AFLP technique, corresponding to the NotI sites mapped throughout the human genome.

Formation of Methyl Acrylate from CO 2 and Ethylene via Methylation of Nickelalactones

KAUST Repository

Bruckmeier, Christian; Lehenmeier, Maximilian W.; Reichardt, Robert; Vagin, Sergei; Rieger, Bernhard

2010-01-01

The nickel-induced coupling of ethylene and CO2 represents a promising pathway toward acrylates. To overcome the high bond dissociation energies of the M-O moieties, we worked out an in situ methylation of nickelalactones to realize the β

Exposure of E. coli to DNA-methylating agents impairs biofilm formation and invasion of eukaryotic cells via down regulation of the N-acetylneuraminate lyase NanA

Directory of Open Access Journals (Sweden)

Pamela eDi Pasquale

2016-02-01

Full Text Available DNA methylation damage can be induced by endogenous and exogenous chemical agents, which has led every living organism to develop suitable response strategies. We investigated protein expression profiles of Escherichia coli upon exposure to the alkylating agent methyl-methane sulfonate (MMS by differential proteomics. Quantitative proteomic data showed a massive downregulation of enzymes belonging to the glycolytic pathway and fatty acids degradation, strongly suggesting a decrease of energy production. A strong reduction in the expression of the N-acetylneuraminate lyases (NanA involved in the sialic acid metabolism was also observed. Using a null NanA mutant and DANA, a substrate analogue acting as competitive inhibitor, we demonstrated that down regulation of NanA affects biofilm formation and adhesion properties of E. coli MV1161. Exposure to alkylating agents also decreased biofilm formation and bacterial adhesion to Caco-2 eukaryotic cell line by the adherent invasive E. coli (AIEC strain LF82. Our data showed that methylation stress impairs E. coli adhesion properties and suggest a possible role of NanA in biofilm formation and bacteria host interactions.

Blow-out limits of nonpremixed turbulent jet flames in a cross flow at atmospheric and sub-atmospheric pressures

KAUST Repository

Wang, Qiang

2015-07-22

The blow-out limits of nonpremixed turbulent jet flames in cross flows were studied, especially concerning the effect of ambient pressure, by conducting experiments at atmospheric and sub-atmospheric pressures. The combined effects of air flow and pressure were investigated by a series of experiments conducted in an especially built wind tunnel in Lhasa, a city on the Tibetan plateau where the altitude is 3650 m and the atmospheric pressure condition is naturally low (64 kPa). These results were compared with results obtained from a wind tunnel at standard atmospheric pressure (100 kPa) in Hefei city (altitude 50 m). The size of the fuel nozzles used in the experiments ranged from 3 to 8 mm in diameter and propane was used as the fuel. It was found that the blow-out limit of the air speed of the cross flow first increased (“cross flow dominant” regime) and then decreased (“fuel jet dominant” regime) as the fuel jet velocity increased in both pressures; however, the blow-out limit of the air speed of the cross flow was much lower at sub-atmospheric pressure than that at standard atmospheric pressure whereas the domain of the blow-out limit curve (in a plot of the air speed of the cross flow versus the fuel jet velocity) shrank as the pressure decreased. A theoretical model was developed to characterize the blow-out limit of nonpremixed jet flames in a cross flow based on a Damköhler number, defined as the ratio between the mixing time and the characteristic reaction time. A satisfactory correlation was obtained at relative strong cross flow conditions (“cross flow dominant” regime) that included the effects of the air speed of the cross flow, fuel jet velocity, nozzle diameter and pressure.

A simple and sensitive fluorescent sensor for methyl parathion based on L-tyrosine methyl ester functionalized carbon dots.

Science.gov (United States)

Hou, Juying; Dong, Jing; Zhu, Haishuang; Teng, Xue; Ai, Shiyun; Mang, Minglin

2015-06-15

In this paper, a simple and sensitive fluorescent sensor for methyl parathion is developed based on L-tyrosine methyl ester functionalized carbon dots (Tyr-CDs) and tyrosinase system. The carbon dots are obtained by simple hydrothermal reaction using citric acid as carbon resource and L-tyrosine methyl ester as modification reagent. The carbon dots are characterized by transmission electron microscope, high resolution transmission electron microscopy, X-ray diffraction spectrum, Fourier transform infrared spectroscopy, and X-ray photoelectron spectroscopy. The carbon dots show strong and stable photoluminescence with a quantum yield of 3.8%. Tyrosinase can catalyze the oxidation of tyrosine methyl ester on the surface of carbon dots to corresponding quinone products, which can quench the fluorescence of carbon dots. When organophosphorus pesticides (OPs) are introduced in system, they can decrease the enzyme activity, thus decrease the fluorescence quenching rate. Methyl parathion, as a model of OPs, was detected. Experimental results show that the enzyme inhibition rate is proportional to the logarithm of the methyl parathion concentration in the range 1.0×10(-10)-1.0×10(-4) M with the detection limit (S/N=3) of 4.8×10(-11) M. This determination method shows a low detection limit, wide linear range, good selectivity and high reproducibility. This sensing system has been successfully used for the analysis of cabbage, milk and fruit juice samples. Copyright © 2014 Elsevier B.V. All rights reserved.

Position-specific prediction of methylation sites from sequence conservation based on information theory.

Science.gov (United States)

Shi, Yinan; Guo, Yanzhi; Hu, Yayun; Li, Menglong

2015-07-23

Protein methylation plays vital roles in many biological processes and has been implicated in various human diseases. To fully understand the mechanisms underlying methylation for use in drug design and work in methylation-related diseases, an initial but crucial step is to identify methylation sites. The use of high-throughput bioinformatics methods has become imperative to predict methylation sites. In this study, we developed a novel method that is based only on sequence conservation to predict protein methylation sites. Conservation difference profiles between methylated and non-methylated peptides were constructed by the information entropy (IE) in a wider neighbor interval around the methylation sites that fully incorporated all of the environmental information. Then, the distinctive neighbor residues were identified by the importance scores of information gain (IG). The most representative model was constructed by support vector machine (SVM) for Arginine and Lysine methylation, respectively. This model yielded a promising result on both the benchmark dataset and independent test set. The model was used to screen the entire human proteome, and many unknown substrates were identified. These results indicate that our method can serve as a useful supplement to elucidate the mechanism of protein methylation and facilitate hypothesis-driven experimental design and validation.

The blow-up problem for a semilinear parabolic equation with a potential

OpenAIRE

Cortazar, C.; Elgueta, M.; Rossi, J. D.

2006-01-01

Let $\\Omega$ be a bounded smooth domain in $\\RR^N$. We consider the problem $u_t= \\Delta u + V(x) u^p$ in $\\Omega \\times [0,T)$, with Dirichlet boundary conditions $u=0$ on $\\partial \\Omega \\times [0,T)$ and initial datum $u(x,0)= M \\phi (x)$ where $M \\geq 0$, $\\phi$ is positive and compatible with the boundary condition. We give estimates for the blow up time of solutions for large values of $M$. As a consequence of these estimates we find that, for $M$ large, the blow up set concentrates ne...

Protein methylation in pea chloroplasts

International Nuclear Information System (INIS)

Niemi, K.J.; Adler, J.; Selman, B.R.

1990-01-01

The methylation of chloroplast proteins has been investigated by incubating intact pea (Pisum sativum) chloroplasts with [ 3 H-methyl]-S-adenosylmethionine. Incubation in the light increases the amount of methylation in both the thylakoid and stromal fractions. Numerous thylakoid proteins serve as substrates for the methyltransfer reactions. Three of these thylakoid proteins are methylated to a significantly greater extent in the light than in the dark. The primary stromal polypeptide methylated is the large subunit of ribulose bisphosphate carboxylase/oxygenase. One other stromal polypeptide is also methylated much more in the light than in the dark. Two distinct types of protein methylation occur. One methylinkage is stable to basic conditions whereas a second type is base labile. The base-stable linkage is indicative of N-methylation of amino acid residues while base-lability is suggestive of carboxymethylation of amino acid residues. Labeling in the light increases the percentage of methylation that is base labile in the thylakoid fraction while no difference is observed in the amount of base-labile methylations in light-labeled and dark-labeled stromal proteins. Also suggestive of carboxymethylation is the detection of volatile [ 3 H]methyl radioactivity which increases during the labeling period and is greater in chloroplasts labeled in the light as opposed to being labeled in the dark; this implies in vivo turnover of the [ 3 H]methyl group

Determination of the fraction of blowing agent released from refrigerator/freezer foam after decommissioning the product

DEFF Research Database (Denmark)

Kjeldsen, Peter; Scheutz, Charlotte

2002-01-01

Several halocarbons having very high global warming potential have been used as blowing agent for insulation foam in refrigerators and freezers. Many appliances are shredded after the end of their useful life. Release experiments carried out in the laboratory on insulation foam revealed that most...... of the blowing agent is not released to the atmosphere during a six-week period following the shredding process. The fraction which is released in the six-week period, is highly dependent on how fine the foam is shredded. The residual blowing agent remaining after the six-week period may be very slowly released...

Evaluation of Methyl-Binding Domain Based Enrichment Approaches Revisited.

Directory of Open Access Journals (Sweden)

Karolina A Aberg

Full Text Available Methyl-binding domain (MBD enrichment followed by deep sequencing (MBD-seq, is a robust and cost efficient approach for methylome-wide association studies (MWAS. MBD-seq has been demonstrated to be capable of identifying differentially methylated regions, detecting previously reported robust associations and producing findings that replicate with other technologies such as targeted pyrosequencing of bisulfite converted DNA. There are several kits commercially available that can be used for MBD enrichment. Our previous work has involved MethylMiner (Life Technologies, Foster City, CA, USA that we chose after careful investigation of its properties. However, in a recent evaluation of five commercially available MBD-enrichment kits the performance of the MethylMiner was deemed poor. Given our positive experience with MethylMiner, we were surprised by this report. In an attempt to reproduce these findings we here have performed a direct comparison of MethylMiner with MethylCap (Diagenode Inc, Denville, NJ, USA, the best performing kit in that study. We find that both MethylMiner and MethylCap are two well performing MBD-enrichment kits. However, MethylMiner shows somewhat better enrichment efficiency and lower levels of background "noise". In addition, for the purpose of MWAS where we want to investigate the majority of CpGs, we find MethylMiner to be superior as it allows tailoring the enrichment to the regions where most CpGs are located. Using targeted bisulfite sequencing we confirmed that sites where methylation was detected by either MethylMiner or by MethylCap indeed were methylated.

Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data.

Science.gov (United States)

Zhang, Yun; Baheti, Saurabh; Sun, Zhifu

2018-05-01

High-throughput bisulfite methylation sequencing such as reduced representation bisulfite sequencing (RRBS), Agilent SureSelect Human Methyl-Seq (Methyl-seq) or whole-genome bisulfite sequencing is commonly used for base resolution methylome research. These data are represented either by the ratio of methylated cytosine versus total coverage at a CpG site or numbers of methylated and unmethylated cytosines. Multiple statistical methods can be used to detect differentially methylated CpGs (DMCs) between conditions, and these methods are often the base for the next step of differentially methylated region identification. The ratio data have a flexibility of fitting to many linear models, but the raw count data take consideration of coverage information. There is an array of options in each datatype for DMC detection; however, it is not clear which is an optimal statistical method. In this study, we systematically evaluated four statistic methods on methylation ratio data and four methods on count-based data and compared their performances with regard to type I error control, sensitivity and specificity of DMC detection and computational resource demands using real RRBS data along with simulation. Our results show that the ratio-based tests are generally more conservative (less sensitive) than the count-based tests. However, some count-based methods have high false-positive rates and should be avoided. The beta-binomial model gives a good balance between sensitivity and specificity and is preferred method. Selection of methods in different settings, signal versus noise and sample size estimation are also discussed.

Estimating total 239240Pu in blow-sand mounds of two safety-shot sites

International Nuclear Information System (INIS)

Gilbert, R.O.; Essington, E.H.

1977-01-01

A study for estimating the total amount (inventory) of 239 240 Pu in blow-sand mounds at two safety-shot sites (Area 13-Project 57 on the Nellis Air Force Base and Clean Slate 3 on the Tonopah Test Range in Nevada) is described. The total amount in blow-sand mounds at these two sites is estimated to be 5.8 +- 1.3 (total +- standard error) and 10.6 +- 2.5 curies, respectively. The total 239 240 Pu in mounds plus desert pavement areas, both to a depth of 5 cm below desert pavement level, is estimated to be 39 +- 5.7 curies at the Project 57 site and 36 +- 4.8 curies at Clean Slate 3. These estimates are compared with the somewhat higher estimates of 46 +- 9 and 37 +- 5.4 curies reported that pertain to only the top 5 cm of mounds and desert pavement. The possibility is discussed that these differences are due to sampling variability arising from the skewed nature of plutonium concentrations, particularly near ground zero

Nanofiber production of poly (vinylidene fluoride) / hexaferrite, obtained by Blow Spinning Technique

International Nuclear Information System (INIS)

Dias, G.C.; Zadorosny, L.; Malmonge, J.A.; Malmonge, L.F.

2014-01-01

In this study, fibrous films of poly (vinylidene fluoride) - PVDF with barium hexaferrite particles were obtained by Solution Blow Spinning technique. In such technique, the polymer solution is injected through an inner nozzle which experiences the action of an accelerated flux of gas that drags and stretches the jet solution forming the nanofibers. The films were obtained from solutions of PVDF/DMF (30% w/v), which was incorporated into barium hexaferrite particles in proportions of 1, 3 and 5% (w / w). The results of the micrographs revealed the formation of a fibrous film with good dispersion of the particles. Xray analyzes showed the predominance of the β crystalline phase of PVDF. The increase of the amount of particles induces the appearance of a characteristic peak of PVDF. EDX measurements confirmed the presence of particles in the films. (author)

The pattern of fraudulent accounting : Ethics, external auditing and internal whistle-blowing process

Directory of Open Access Journals (Sweden)

Loredana Ferri Di Fabrizio

2017-03-01

Full Text Available The ongoing debate in the literature centres on the compromised auditor’s independence in consequence of the relevant provisions perceived for non-audit services provided to the audited clients. The accounting scandals that have occurred over the past two decades show the lack of competence and independence of external auditors, who kept quite in the face of attempted frauds. The case of Tesco represents an undeniable example of the loss of auditor’s independence, who failed to detect accounting manipulation confirming the importance of whistle-blowing procedures in disclosing concerns before they become serious problems. When turnover occurs in CEOs it is more likely that a rotation in external auditors occurs as well. Finally, changes in top management enable whistle-blowing actions to be successful, interrupting the organization’s dependence on serious wrongdoings and preventing a disastrous ending. The success of whistle-blowing in preventing company failure makes it an effective instrument of сorporate пovernance.

Global DNA methylation analysis using methyl-sensitive amplification polymorphism (MSAP).

Science.gov (United States)

Yaish, Mahmoud W; Peng, Mingsheng; Rothstein, Steven J

2014-01-01

DNA methylation is a crucial epigenetic process which helps control gene transcription activity in eukaryotes. Information regarding the methylation status of a regulatory sequence of a particular gene provides important knowledge of this transcriptional control. DNA methylation can be detected using several methods, including sodium bisulfite sequencing and restriction digestion using methylation-sensitive endonucleases. Methyl-Sensitive Amplification Polymorphism (MSAP) is a technique used to study the global DNA methylation status of an organism and hence to distinguish between two individuals based on the DNA methylation status determined by the differential digestion pattern. Therefore, this technique is a useful method for DNA methylation mapping and positional cloning of differentially methylated genes. In this technique, genomic DNA is first digested with a methylation-sensitive restriction enzyme such as HpaII, and then the DNA fragments are ligated to adaptors in order to facilitate their amplification. Digestion using a methylation-insensitive isoschizomer of HpaII, MspI is used in a parallel digestion reaction as a loading control in the experiment. Subsequently, these fragments are selectively amplified by fluorescently labeled primers. PCR products from different individuals are compared, and once an interesting polymorphic locus is recognized, the desired DNA fragment can be isolated from a denaturing polyacrylamide gel, sequenced and identified based on DNA sequence similarity to other sequences available in the database. We will use analysis of met1, ddm1, and atmbd9 mutants and wild-type plants treated with a cytidine analogue, 5-azaC, or zebularine to demonstrate how to assess the genetic modulation of DNA methylation in Arabidopsis. It should be noted that despite the fact that MSAP is a reliable technique used to fish for polymorphic methylated loci, its power is limited to the restriction recognition sites of the enzymes used in the genomic

Micro-syntheses for the use of carbon 13 or carbon 14. Micro-preparations of methyl alcohol, methyl iodide, and sodium acetate labeled in the methyl group; Microsyntheses pour l'emploi de carbone 13 ou de carbone 14. Micropreparations d'alcool methylique, d'iodure de methyle et d'acetate de sodium marque sur le groupement methyle

Energy Technology Data Exchange (ETDEWEB)

Baret, C; Pichat, L

1951-11-01

Apparatus and technique are described in detail for (1) reduction of CO{sub 2} to CH{sub 3}OH with LiAlH{sub 4}, (2) conversion of the methanol to CH{sub 3}I by HI, (3) formation of the Mg Grignard reagent, and (4) addition of inactive CO{sub 2} to form CH{sub 3}COOH. All these operations have been carried out on 0.005 moles. Methyl-labeled Na acetate has been prepared in 67% yield based on the Ba{sup 14}CO{sub 3} used as starting material. (author) [French] Description detaillee d'une technique deja connue pour la reduction du gaz carbonique en alcool methylique par LiAlH{sub 4}. Conversion du methanol en iodure de methyle. Ce dernier transforme en reactif de Grigard, et carbonate, fournit de l'acide acetique. Toutes ces operations on ete effectuees sur 5 x 10{sup -3} moles. La methode a ete appliquee a la synthese d'acetate de sodium marque par le groupement methyle par {sup 14}C avec un rendement global de 67% base sur le carbonate de baryum radioactif mis en oeuvre. (auteurs)

Formation of Methyl Acrylate from CO 2 and Ethylene via Methylation of Nickelalactones

KAUST Repository

Bruckmeier, Christian

2010-05-24

The nickel-induced coupling of ethylene and CO2 represents a promising pathway toward acrylates. To overcome the high bond dissociation energies of the M-O moieties, we worked out an in situ methylation of nickelalactones to realize the β-hydride elimination and the liberation of the acrylate species. © 2010 American Chemical Society.

Quantitative orientational characterization if low - density polyethylene blow films by x-ray and birefringence

International Nuclear Information System (INIS)

Taheri Qazvini, N.; Mohammadi, N.; Ghaffarian, R.; Assempour, H.; Haghighatkish, M.

2002-01-01

The effect of two important parameters of film blowing processes, i.e., take-up ration and blow-up ratio, on the overall orientation of low-density blown films have been investigated using birefringence measurements. Furthermore, by combining x-ray diffraction pole figure analysis and birefringence, the White and Spruiell biaxial orientation functions have been determined for aforementioned sample. Within the range of processing condition studied, increasing take-up ratio, increases orientation in both machine and transverse direction. Upon increasing blow-up ratio, orientation in the transverse direction increases and the overall orientation state approaches to equal biaxial one. Characterization of the crystalline regions by pole figure analysis reveals that a and b crystallographic axes preferentially orientate in the film plane and the direction normal to it, respectively. The amorphous regions do not have any preferential orientation

LHC MD 1087: Controlled Longitudinal Emittance Blow-up with Short Bunches

CERN Document Server

Timko, Helga; Esteban Muller, Juan; Jaussi, Michael; Lasheen, Alexandre; Shaposhnikova, Elena; CERN. Geneva. ATS Department

2017-01-01

The aim of the MD was to study the controlled longitudinal emittance blow-up applied during the ramp with bunches that are slightly shorter than operational. Earlier MDs in 2015 have shown that with a short target bunch length, the blow-up is less controlled and a bifurcation of bunch lengths occurs. The presented measurements show that the bifurcation is independent of the presence of the bunch length feedback, pointing towards an intensity-dependent phenomenon, originating from a synchrotron frequency shift with intensity. Accurate measurements of synchrotron frequency shift with intensity are presented as well. The measurements took place between 22nd August 2016, 19:00 and 23rd August 2016, 04:00.

A DNA methylation microarray-based study identifies ERG as a gene commonly methylated in prostate cancer.

Science.gov (United States)

Schwartzman, Jacob; Mongoue-Tchokote, Solange; Gibbs, Angela; Gao, Lina; Corless, Christopher L; Jin, Jennifer; Zarour, Luai; Higano, Celestia; True, Lawrence D; Vessella, Robert L; Wilmot, Beth; Bottomly, Daniel; McWeeney, Shannon K; Bova, G Steven; Partin, Alan W; Mori, Motomi; Alumkal, Joshi

2011-10-01

DNA methylation of promoter regions is a common event in prostate cancer, one of the most common cancers in men worldwide. Because prior reports demonstrating that DNA methylation is important in prostate cancer studied a limited number of genes, we systematically quantified the DNA methylation status of 1505 CpG dinucleotides for 807 genes in 78 paraffin-embedded prostate cancer samples and three normal prostate samples. The ERG gene, commonly repressed in prostate cells in the absence of an oncogenic fusion to the TMPRSS2 gene, was one of the most commonly methylated genes, occurring in 74% of prostate cancer specimens. In an independent group of patient samples, we confirmed that ERG DNA methylation was common, occurring in 57% of specimens, and cancer-specific. The ERG promoter is marked by repressive chromatin marks mediated by polycomb proteins in both normal prostate cells and prostate cancer cells, which may explain ERG's predisposition to DNA methylation and the fact that tumors with ERG DNA methylation were more methylated, in general. These results demonstrate that bead arrays offer a high-throughput method to discover novel genes with promoter DNA methylation such as ERG, whose measurement may improve our ability to more accurately detect prostate cancer.

On lower bounds for possible blow-up solutions to the periodic Navier-Stokes equation

International Nuclear Information System (INIS)

Cortissoz, Jean C.; Montero, Julio A.; Pinilla, Carlos E.

2014-01-01

We show a new lower bound on the H .3/2 (T 3 ) norm of a possible blow-up solution to the Navier-Stokes equation, and also comment on the extension of this result to the whole space. This estimate can be seen as a natural limiting result for Leray's blow-up estimates in L p (R 3 ), 3 .5/2 (T 3 ), and give the corresponding extension to the case of the whole space

Dolphins Who Blow Bubbles: Anthropological Machines and Native Informants

NARCIS (Netherlands)

Lord, C.

2011-01-01

"Dolphins Who Blow Bubbles: Anthropological Machines and Native Informants" engages a reading between an Oscar winning and now ‘cult’ activist film The Cove (Louise Psihoyos 2009) and classical texts on the human-animal threshold. Giorgio Agamben’s The Open (2002) and Jacques Derrida’s "The Animal

Methylation-sensitive amplified polymorphism-based genome-wide analysis of cytosine methylation profiles in Nicotiana tabacum cultivars.

Science.gov (United States)

Jiao, J; Wu, J; Lv, Z; Sun, C; Gao, L; Yan, X; Cui, L; Tang, Z; Yan, B; Jia, Y

2015-11-26

This study aimed to investigate cytosine methylation profiles in different tobacco (Nicotiana tabacum) cultivars grown in China. Methylation-sensitive amplified polymorphism was used to analyze genome-wide global methylation profiles in four tobacco cultivars (Yunyan 85, NC89, K326, and Yunyan 87). Amplicons with methylated C motifs were cloned by reamplified polymerase chain reaction, sequenced, and analyzed. The results show that geographical location had a greater effect on methylation patterns in the tobacco genome than did sampling time. Analysis of the CG dinucleotide distribution in methylation-sensitive polymorphic restriction fragments suggested that a CpG dinucleotide cluster-enriched area is a possible site of cytosine methylation in the tobacco genome. The sequence alignments of the Nia1 gene (that encodes nitrate reductase) in Yunyan 87 in different regions indicate that a C-T transition might be responsible for the tobacco phenotype. T-C nucleotide replacement might also be responsible for the tobacco phenotype and may be influenced by geographical location.

Formation of soap bubbles by gas jet

OpenAIRE

Zhou, M. L.; Li, M.; Chen, Z. Y.; Han, J. F.; Liu, D.

2017-01-01

Soap bubbles can be easily generated by varies methods, while their formation process is complicated and still worth study. A model about the bubble formation process was proposed in Phys. Rev. Lett. 116, 077801 recently, and it was reported that the bubbles were formed when the gas blowing velocity was above one threshold. However, after repeating these experiments, we found the bubbles could be generated in two velocities ranges which corresponded to laminar and turbulent gas jet respective...

Cadmium inhibits repair of UV-, methyl methanesulfonate- and N-methyl-N-nitrosourea-induced DNA damage in Chinese hamster ovary cells

International Nuclear Information System (INIS)

Fatur, Tanja; Lah, Tamara T.; Filipic, Metka

2003-01-01

The co-genotoxic effects of cadmium are well recognized and it is assumed that most of these effects are due to the inhibition of DNA repair. We used the comet assay to analyze the effect of low, non-toxic concentrations of CdCl 2 on DNA damage and repair-induced in Chinese hamster ovary (CHO) cells by UV-radiation, by methyl methanesulfonate (MMS) and by N-methyl-N-nitrosourea (MNU). The UV-induced DNA lesions revealed by the comet assay are single-strand breaks which are the intermediates formed during nucleotide excision repair (NER). In cells exposed to UV-irradiation alone the formation of DNA strand breaks was rapid, followed by a fast rejoining phase during the first 60 min after irradiation. In UV-irradiated cells pre-exposed to CdCl 2 , the formation of DNA strand breaks was significantly slower, indicating that cadmium inhibited DNA damage recognition and/or excision. Methyl methanesulfonate and N-methyl-N-nitrosourea directly alkylate nitrogen and oxygen atoms of DNA bases. The lesions revealed by the comet assay are mainly breaks at apurinic/apyrimidinic (AP) sites and breaks formed as intermediates during base excision repair (BER). In MMS treated cells the initial level of DNA strand breaks did not change during the first hour of recovery; thereafter repair was detected. In cells pre-exposed to CdCl 2 the MMS-induced DNA strand breaks accumulated during the first 2 h of recovery, indicating that AP sites and/or DNA strand breaks were formed but that further steps of BER were blocked. In MNU treated cells the maximal level of DNA strand breaks was detected immediately after the treatment and the breaks were repaired rapidly. In CdCl 2 pre-treated cells the formation of MNU-induced DNA single-strand breaks was not affected, while the repair was slower, indicating inhibition of polymerization and/or the ligation step of BER. Cadmium thus affects the repair of UV-, MMS- and MNU-induced DNA damage, providing further evidence, that inhibition of DNA repair

FE-Analysis of Stretch-Blow Moulded Bottles Using an Integrative Process Simulation

Science.gov (United States)

Hopmann, C.; Michaeli, W.; Rasche, S.

2011-05-01

The two-stage stretch-blow moulding process has been established for the large scale production of high quality PET containers with excellent mechanical and optical properties. The total production costs of a bottle are significantly caused by the material costs. Due to this dominant share of the bottle material, the PET industry is interested in reducing the total production costs by an optimised material efficiency. However, a reduced material inventory means decreasing wall thicknesses and therewith a reduction of the bottle properties (e.g. mechanical properties, barrier properties). Therefore, there is often a trade-off between a minimal bottle weight and adequate properties of the bottle. In order to achieve the objectives Computer Aided Engineering (CAE) techniques can assist the designer of new stretch-blow moulded containers. Hence, tools such as the process simulation and the structural analysis have become important in the blow moulding sector. The Institute of Plastics Processing (IKV) at RWTH Aachen University, Germany, has developed an integrative three-dimensional process simulation which models the complete path of a preform through a stretch-blow moulding machine. At first, the reheating of the preform is calculated by a thermal simulation. Afterwards, the inflation of the preform to a bottle is calculated by finite element analysis (FEA). The results of this step are e.g. the local wall thickness distribution and the local biaxial stretch ratios. Not only the material distribution but also the material properties that result from the deformation history of the polymer have significant influence on the bottle properties. Therefore, a correlation between the material properties and stretch ratios is considered in an integrative simulation approach developed at IKV. The results of the process simulation (wall thickness, stretch ratios) are transferred to a further simulation program and mapped on the bottles FE mesh. This approach allows a local

Theoretical spectroscopic characterization at low temperatures of S-methyl thioformate and O-methyl thioformate

International Nuclear Information System (INIS)

Senent, M. L.; Puzzarini, C.; Hochlaf, M.; Domínguez-Gómez, R.; Carvajal, M.

2014-01-01

Highly correlated ab initio methods are employed to determine spectroscopic properties at low temperatures of two S-analogs of methyl formate: S-methyl thioformate CH 3 -S-CHO (MSCHO) and O-methyl thioformate CH 3 -O-CHS (MOCHS). Both species are detectable and they are expected to play an important role in Astrochemistry. Molecular properties are compared with those of the O-analog, methyl formate. Both isomers present two conformers cis and trans. cis-CH 3 -S-CHO represents the most stable structure lying 4372.2 cm −1 below cis-CH 3 -O-CHS. The energy difference between the cis and trans forms is drastically lower for MSCHO (1134 cm −1 ) than for MOCHS (1963.6 cm −1 ). Harmonic and anharmonic fundamentals and the corresponding intensities, as well as the rotational constants for the ground vibrational and first excited torsional states and the centrifugal distortions constants, are provided. Low torsional energy levels have been obtained by solving variationally a two dimensional Hamiltonian expressed in terms of the two torsional degrees of freedom. The corresponding 2D potential energy surfaces have been computed at the CCSD(T)/aug-cc-pVTZ level of theory. The methyl torsional barriers V 3 (cis) are determined to be 139.7 cm −1 (CH 3 -S-CHO) and 670.4 cm −1 (CH 3 -O-CHS). The A/E splitting of ground torsional state has been estimated to be 0.438 cm −1 for CH 3 -S-CHO and negligible for CH 3 -O-CHS

The blow-up problem for a semilinear parabolic equation with a potential

Science.gov (United States)

Cortazar, Carmen; Elgueta, Manuel; Rossi, Julio D.

2007-11-01

Let [Omega] be a bounded smooth domain in . We consider the problem ut=[Delta]u+V(x)up in [Omega]×[0,T), with Dirichlet boundary conditions u=0 on [not partial differential][Omega]×[0,T) and initial datum u(x,0)=M[phi](x) where M[greater-or-equal, slanted]0, [phi] is positive and compatible with the boundary condition. We give estimates for the blow-up time of solutions for large values of M. As a consequence of these estimates we find that, for M large, the blow-up set concentrates near the points where [phi]p-1V attains its maximum.

Micro-syntheses for the use of carbon 13 or carbon 14. Micro-preparations of methyl alcohol, methyl iodide, and sodium acetate labeled in the methyl group

International Nuclear Information System (INIS)

Baret, C.; Pichat, L.

1951-11-01

Apparatus and technique are described in detail for (1) reduction of CO 2 to CH 3 OH with LiAlH 4 , (2) conversion of the methanol to CH 3 I by HI, (3) formation of the Mg Grignard reagent, and (4) addition of inactive CO 2 to form CH 3 COOH. All these operations have been carried out on 0.005 moles. Methyl-labeled Na acetate has been prepared in 67% yield based on the Ba 14 CO 3 used as starting material. (author) [fr

Experimental vapor pressures (from 1 Pa to 100 kPa) of six saturated Fatty Acid Methyl Esters (FAMEs): Methyl hexanoate, methyl octanoate, methyl decanoate, methyl dodecanoate, methyl tetradecanoate and methyl hexadecanoate

International Nuclear Information System (INIS)

Sahraoui, Lakhdar; Khimeche, Kamel; Dahmani, Abdallah; Mokbel, Ilham; Jose, Jacques

2016-01-01

Highlight: • Vapor-liquid equilibria, Enthalpy of Vaporization, saturated Fatty Acid Methyl Ester. - Abstract: Vapor pressures of six saturated Fatty Acid Methyl Esters (FAMEs), methyl hexanoate (or methyl caproate), methyl octanoate (or methyl caprylate), Methyl decanoate (or methyl caprate), methyl dodecanoate (or methyl laurate), methyl tetradecanoate (or methyl myristate), and methyl hexadecanoate (or methyl palmitate) were measured from 1 Pa to 100 kPa and at temperature range between 262 and 453 K using a static apparatus. The experimental data (P-T) were compared with the available literature data.

Frequency Response of Near-Wall Coherent Structures to Localized Periodic Blowing and Suction in Turbulent Boundary Layer

International Nuclear Information System (INIS)

Jian-Hua, Liu; Nan, Jiang

2008-01-01

We experimentally investigate the frequency response of near-wall coherent structures to localized periodic blowing and suction through a spanwise slot in a turbulent boundary layer by changing the frequency of periodic disturbance at similar velocities of free stream. The effects of blowing and suction disturbance on energy redistribution, turbulent intensity u' rms + , over y + and waveforms of phase-averaged velocity during sweeping process are respectively discussed under three frequencies of periodic blowing and suction in near-wall region of turbulent boundary layer, compared with those in a standard turbulent boundary layer. The most effective disturbance frequency is figured out in this system. (fundamental areas of phenomenology (including applications))

Longitudinal phase space characterization of the blow-out regime of rf photoinjector operation

OpenAIRE

J. T. Moody; P. Musumeci; M. S. Gutierrez; J. B. Rosenzweig; C. M. Scoby

2009-01-01

Using an experimental scheme based on a vertically deflecting rf deflector and a horizontally dispersing dipole, we characterize the longitudinal phase space of the beam in the blow-out regime at the UCLA Pegasus rf photoinjector. Because of the achievement of unprecedented resolution both in time (50 fs) and energy (1.0 keV), we are able to demonstrate some important properties of the beams created in this regime such as extremely low longitudinal emittance, large temporal energy chirp, and ...

ROTATIONAL SPECTRUM AND TENTATIVE DETECTION OF DCOOCH3-METHYL FORMATE IN ORION

International Nuclear Information System (INIS)

Margules, L.; Huet, T. R.; Demaison, J.; Carvajal, M.; Kleiner, I.; Moellendal, H.; Tercero, B.; Marcelino, N.; Cernicharo, J.

2010-01-01

New centimeter-wave (7-80 GHz) and submillimeter-wave (580-661 GHz) spectra of a deuterated species of methyl formate (DCOOCH 3 ) have been measured. Transitions with a maximum value of J = 64 and K = 36 have been assigned and fitted together with previous measurements. The internal rotation of this compound was treated using the so-called rho axis method. A total of 1703 transitions were fitted using this method. Only 24 parameters were employed in the final fit, which has an rms deviation of 94.2 kHz. The dipole moment and the nuclear quadrupole coupling constants of the deuterated specie have also been obtained. This new study has permitted a tentative detection of DCOOCH 3 in Orion with the IRAM 30 m telescope based on the observation of more than 100 spectral features with low blending effects among the 400 lines expected in the observed frequency domain (for which over 300 are heavily blended with other species). These 100 transitions are above noise and confusion limited without heavy blending and cannot be assigned to any other species. Moreover, none of the strongest unblended transitions is missing. The derived source-averaged total column density for DCOOCH 3 is 7.8 x 10 14 cm -2 and the DCOOCH 3 /HCOOCH 3 column density ratio varies between 0.02 and 0.06 in the different cloud components of Orion. This value is consistent with the deuteration enhancement found for other species in this cloud.

Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping

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Maruoka Shuichiro

2008-12-01

Full Text Available Abstract Background The study of genome-wide DNA methylation changes has become more accessible with the development of various array-based technologies though when studying species other than human the choice of applications are limited and not always within reach. In this study, we adapted and tested the applicability of Methylation Specific Digital Karyotyping (MSDK, a non-array based method, for the prospective analysis of epigenetic changes after perinatal nutritional modifications in a mouse model of allergic airway disease. MSDK is a sequenced based method that allows a comprehensive and unbiased methylation profiling. The method generates 21 base pairs long sequence tags derived from specific locations in the genome. The resulting tag frequencies determine in a quantitative manner the methylation level of the corresponding loci. Results Genomic DNA from whole lung was isolated and subjected to MSDK analysis using the methylation-sensitive enzyme Not I as the mapping enzyme and Nla III as the fragmenting enzyme. In a pair wise comparison of the generated mouse MSDK libraries we identified 158 loci that are significantly differentially methylated (P-value = 0.05 after perinatal dietary changes in our mouse model. Quantitative methylation specific PCR and sequence analysis of bisulfate modified genomic DNA confirmed changes in methylation at specific loci. Differences in genomic MSDK tag counts for a selected set of genes, correlated well with changes in transcription levels as measured by real-time PCR. Furthermore serial analysis of gene expression profiling demonstrated a dramatic difference in expressed transcripts in mice exposed to perinatal nutritional changes. Conclusion The genome-wide methylation survey applied in this study allowed for an unbiased methylation profiling revealing subtle changes in DNA methylation in mice maternally exposed to dietary changes in methyl-donor content. The MSDK method is applicable for mouse models

Self Induced Buoyant Blow Off in Upward Flame Spread on Thin Solid Fuels

Science.gov (United States)

Johnston, Michael C.; T'ien, James S.; Muff, Derek E.; Olson, Sandra L.; Ferkul, Paul V.

2013-01-01

Upward flame spread experiments were conducted on a thin fabric cloth consisting of 75% cotton and 25% fiberglass. The sample is sandwiched symmetrically with stainless steel plates with the exposed width varying between 2 to 8.8 cm from test to test and >1.5m tall. The bottom edge was ignited resulting in a symmetric two sided flame. For the narrower samples (. 5cm), two sided flame growth would proceed until reaching some limiting value (15-30 cm depending on sample width). Fluctuation or instability of the flame base on one side would initially become visible and then the flame base would retreat downstream and cause extinguishment on one side. Detailed examination of the still images shows that the fuel continues to vaporize from the extinguished side due to the thermally thin nature of the fuel. But, due to the remaining inert fiberglass mesh, which acts as a flashback arrestor, the extinguished side was not able to be reignited by the remaining flame. The remaining flame would then shrink in length due to the reduced heat transfer to the solid to a shorter length. The one-sided flame will spread stably with a constant speed and a constant flame length to the end of the sample. A constant length flame implies that the pyrolysis front and the burnt out fronts move at the same speed. For the wider samples (. 7cm), no one-sided extinction is observed. Two-sided flames spread all the way to the top of the sample. For these wider widths, the flames are still growing and have not reached their limiting length if it exists. Care was taken to minimize the amount of non-symmetries in the experimental configuration. Repeated tests show that blow-off can occur on either side of the sample. The flame growth is observed to be very symmetric during the growth phase and grew to significant length (>10cm) before extinction of the flame on one side. Our proposed explanation of this unusual phenomenon (i.e. stronger two ]sided flame cannot exist but weaker one-sided flame can

Biosynthesis of 2-methyl-3-buten-2-ol emitted from needles of Pinus ponderosa via the non-mevalonate DOXP/MEP pathway of isoprenoid formation.

Science.gov (United States)

Zeidler, J; Lichtenthaler, H K

2001-06-01

The volatile hemiterpene 2-methyl-3-buten-2-ol (MBO) is emitted from the needles of several pine species from the Western United States and contributes to ozone formation in the atmosphere. It is synthesised enzymatically from dimethylallyl diphosphate (DMAPP). We show here that needles of Pinus ponderosa Laws. incorporated [1-2H1]-1-deoxy-D-xylulose (d-DOX) into the emitted MBO, but not D,L-[2-13C]mevalonic acid lactone. Furthermore, MBO emission was inhibited by fosmidomycin, a specific inhibitor of the second enzyme of the mevalonate-independent pathway of isopentenyl diphosphate and DMAPP formation, i.e. the 1-deoxy-D-xylulose 5-phosphate/2-C-methyl-D-erythritol 4-phosphate (DOXP/MEP) pathway. We thus prove that MBO emitted from needles of P. ponderosa is primarily formed via the DOXP/MEP pathway.

Blow-Up Analysis for a Quasilinear Degenerate Parabolic Equation with Strongly Nonlinear Source

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Pan Zheng

2012-01-01

Full Text Available We investigate the blow-up properties of the positive solution of the Cauchy problem for a quasilinear degenerate parabolic equation with strongly nonlinear source ut=div(|∇um|p−2∇ul+uq,  (x,t∈RN×(0,T, where N≥1, p>2 , and m, l,  q>1, and give a secondary critical exponent on the decay asymptotic behavior of an initial value at infinity for the existence and nonexistence of global solutions of the Cauchy problem. Moreover, under some suitable conditions we prove single-point blow-up for a large class of radial decreasing solutions.

Theoretical spectroscopic characterization at low temperatures of S-methyl thioformate and O-methyl thioformate

Energy Technology Data Exchange (ETDEWEB)

Senent, M. L., E-mail: senent@iem.cfmac.csic.es [Departamento de Química y Física Teóricas, Instituto de Estructura de la Materia, IEM-C.S.I.C., Serrano 121, Madrid 28006 (Spain); Puzzarini, C., E-mail: cristina.puzzarini@unibo.it [Dipartimento di Chimica G. Ciamician, Università di Bologna, Via F. Selmi 2, I-40126 Bologna (Italy); Hochlaf, M., E-mail: hochlaf@univ-mlv.fr [Laboratoire de Modélisation et Simulation Multi Echelle, Université Paris-Est, MSME UMR 8208 CNRS, 5 boulevard Descartes, 77454 Marne-la-Vallée (France); Domínguez-Gómez, R., E-mail: rosa.dominguez@upm.es [Departamento de Ingeniería Civil, Cátedra de Química, E.U.I.T. Obras Públicas, Universidad Politécnica de Madrid, Madrid (Spain); Carvajal, M., E-mail: miguel.carvajal@dfa.uhu.es [Departamento de Física Aplicada, Facultad de Ciencias Experimentales, Unidad Asociada IEM-CSIC-U.Huelva, Universidad de Huelva, 21071 Huelva (Spain)

2014-09-14

Highly correlated ab initio methods are employed to determine spectroscopic properties at low temperatures of two S-analogs of methyl formate: S-methyl thioformate CH{sub 3}-S-CHO (MSCHO) and O-methyl thioformate CH{sub 3}-O-CHS (MOCHS). Both species are detectable and they are expected to play an important role in Astrochemistry. Molecular properties are compared with those of the O-analog, methyl formate. Both isomers present two conformers cis and trans. cis-CH{sub 3}-S-CHO represents the most stable structure lying 4372.2 cm{sup −1} below cis-CH{sub 3}-O-CHS. The energy difference between the cis and trans forms is drastically lower for MSCHO (1134 cm{sup −1}) than for MOCHS (1963.6 cm{sup −1}). Harmonic and anharmonic fundamentals and the corresponding intensities, as well as the rotational constants for the ground vibrational and first excited torsional states and the centrifugal distortions constants, are provided. Low torsional energy levels have been obtained by solving variationally a two dimensional Hamiltonian expressed in terms of the two torsional degrees of freedom. The corresponding 2D potential energy surfaces have been computed at the CCSD(T)/aug-cc-pVTZ level of theory. The methyl torsional barriers V{sub 3}(cis) are determined to be 139.7 cm{sup −1} (CH{sub 3}-S-CHO) and 670.4 cm{sup −1} (CH{sub 3}-O-CHS). The A/E splitting of ground torsional state has been estimated to be 0.438 cm{sup −1} for CH{sub 3}-S-CHO and negligible for CH{sub 3}-O-CHS.

Parameters of the Two-Phase Sand-Air Stream in the Blowing Process

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Danko J.

2012-12-01

Full Text Available Theoretical problems concerning the determination of work parameters of the two-phase sand-air stream in the cores making process by blowing methods as well as experimental methods of determination of the main and auxiliary parameters of this process decisive on the cores quality assessed by the value and distribution of their apparent density are presented in the paper. In addition the results of visualisations of the core-box filling with the sand-air stream, from the blowing chamber, obtained by the process filming by means of the quick-action camera are presented in the paper and compared with the results of simulation calculations with the application of the ProCast software.

Thermo-mechanical simulation of liquid-supported stretch blow molding

International Nuclear Information System (INIS)

Zimmer, J.; Stommel, M.

2015-01-01

Stretch blow molding is the well-established plastics forming method to produce Polyehtylene therephtalate (PET) bottles. An injection molded preform is heated up above the PET glass transition temperature (Tg∼85°C) and subsequently inflated by pressurized air into a closed cavity. In the follow-up filling process, the resulting bottle is filled with the final product. A recently developed modification of the process combines the blowing and filling stages by directly using the final liquid product to inflate the preform. In a previously published paper, a mechanical simulation and successful evaluation of this liquid-driven stretch blow molding process was presented. In this way, a realistic process parameter dependent simulation of the preform deformation throughout the forming process was enabled, whereas the preform temperature evolution during forming was neglected. However, the formability of the preform is highly reduced when the temperature sinks below Tg during forming. Experimental investigations show temperature-induced failure cases due to the fast heat transfer between hot preform and cold liquid. Therefore, in this paper, a process dependent simulation of the temperature evolution during processing to avoid preform failure is presented. For this purpose, the previously developed mechanical model is used to extract the time dependent thickness evolution. This information serves as input for the heat transfer simulation. The required material parameters are calibrated from preform cooling experiments recorded with an infrared-camera. Furthermore, the high deformation ratios during processing lead to strain induced crystallization. This exothermal reaction is included into the simulation by extracting data from preform measurements at different stages of deformation via Differential Scanning Calorimetry (DSC). Finally, the thermal simulation model is evaluated by free forming experiments, recorded by a high-speed infrared camera

Numerical Analysis of Film Cooling at High Blowing Ratio

Science.gov (United States)

El-Gabry, Lamyaa; Heidmann, James; Ameri, Ali

2009-01-01

Computational Fluid Dynamics is used in the analysis of a film cooling jet in crossflow. Predictions of film effectiveness are compared with experimental results for a circular jet at blowing ratios ranging from 0.5 to 2.0. Film effectiveness is a surface quantity which alone is insufficient in understanding the source and finding a remedy for shortcomings of the numerical model. Therefore, in addition, comparisons are made to flow field measurements of temperature along the jet centerline. These comparisons show that the CFD model is accurately predicting the extent and trajectory of the film cooling jet; however, there is a lack of agreement in the near-wall region downstream of the film hole. The effects of main stream turbulence conditions, boundary layer thickness, turbulence modeling, and numerical artificial dissipation are evaluated and found to have an insufficient impact in the wake region of separated films (i.e. cannot account for the discrepancy between measured and predicted centerline fluid temperatures). Analyses of low and moderate blowing ratio cases are carried out and results are in good agreement with data.

Occurrence of blowing snow events at an alpine site over a 10-year period: Observations and modelling

Science.gov (United States)

Vionnet, V.; Guyomarc'h, G.; Naaim Bouvet, F.; Martin, E.; Durand, Y.; Bellot, H.; Bel, C.; Puglièse, P.

2013-05-01

Blowing snow events control the evolution of the snow pack in mountainous areas and cause inhomogeneous snow distribution. The goal of this study is to identify the main features of blowing snow events at an alpine site and assess the ability of the detailed snowpack model Crocus to reproduce the occurrence of these events in a 1D configuration. We created a database of blowing snow events observed over 10 years at our experimental site. Occurrences of blowing snow events were divided into cases with and without concurrent falling snow. Overall, snow transport is observed during 10.5% of the time in winter and occurs with concurrent falling snow 37.3% of the time. Wind speed and snow age control the frequency of occurrence. Model results illustrate the necessity of taking the wind-dependence of falling snow grain characteristics into account to simulate periods of snow transport and mass fluxes satisfactorily during those periods. The high rate of false alarms produced by the model is investigated in detail for winter 2010/2011 using measurements from snow particle counters.

Severe diffuse axon injury in chronic alcoholic rat medulla oblongata following a concussion blow.

Science.gov (United States)

Luo, Jianming; Chen, Guang; Wei, Lai; Qian, Hong; Lai, Xiaoping; Wang, Dian; Lv, Junyao; Yu, Xiaojun

2014-01-01

We investigated the axonal morphological changes and expression of both tau protein and β-APP following concussion to the medulla oblongata, in a rat model of chronic alcoholism. Fifty-nine male Sprague-Dawley rats were randomly divided into EtOH, EtOH-TBI and control groups (water group, water-TBI group). To establish chronic alcoholic rats, rats were intragastrically given edible spirituous liquor twice daily. Rats also received a blow on the occipital tuberosity with an iron pendulum. Morphological changes and expression of tau and β-APP proteins in the medulla oblongata were examined. (a) Nerve fibre thickening and twisting were observed in alcoholic rats, with nerve fibre changes becoming more significant following a concussion blow, which leads to some nerve fibres fracturing. (b) Transmission electron microscopy revealed that the nerve fibre myelin became loosened and displayed lamellar separation, which became more significant following concussion. (c) The integral optical density (IOD) sum value of β-APP of the EtOH-TBI group was lower than that in the EtOH group (P Chronic alcoholism caused nerve fibre and neuronal morphology damage in the rat medulla oblongata, with structural damage becoming more significant following concussion. (b) Concussion changed the expression of β-APP and tau protein in chronic alcoholic rat medulla oblongata, suggesting that chronic alcoholism can lead to severe axonal injury following a concussion blow. (c) The effect of chronic alcoholism may be synergistic the concussion blow to promote animal injury and death.

Effect of DNA sequence, ionic strength, and cationic DNA affinity binders on the methylation of DNA by N-methyl-N-nitrosourea

International Nuclear Information System (INIS)

Wurdeman, R.L.; Gold, B.

1988-01-01

DNA alkylation by N-alkyl-N-nitrosoureas is generally accepted to be responsible for their mutagenic, carcinogenic, and antineoplastic activities. The exact nature of the ultimate alkylating intermediate is still controversial, with a variety of species having been nominated. The sequence specificity for DNA alkylation by simple N-alkyl-N-nitrosoureas has not been reported, although such information is basic in understanding the specific point mutations induced by these compounds in oncogene targets. These two points are addressed by using N-methyl-N-nitrosourea methylation of a 576 base-pair 32 P-end-labeled DNA restriction fragment and high-resolution polyacrylamide sequencing gels. This method provides information on the formation of N 7 -methylguanine, by the generation of single-strand breaks upon exposure to piperidine

Importance of back blow maneuvers in a 6 month old patient with sudden upper airway obstruction

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Pinar Gencpinar

2015-12-01

Full Text Available Foreign body aspiration in children under four years old is one of the most frequently observed reasons for accident related deaths. It is more common in this age group due to inadequate swallowing functions and exploration of objects with the mouth. The most frequently encountered foreign bodies are food and toy parts. Life threatening complete laryngeal obstruction is rarely observed. Dyspnea, hypersalivation, cough and cyanosis can be seen. The basic and life-saving treatment approach is complete removal of foreign body maneuvers in the sudden onset of total obstruction. Here we report a six-month old male, who ingested a foreign body and was treated with back blow maneuvers successfully. In this case we emphasized the importance of back blow maneuvers. Keywords: Upper airway obstruction, Child, Back blows maneuvers

Starch/poly (butylene adipate-co-terephthalate/montmorillonite films produced by blow extrusion

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Rodrigo A. L. Santos

2014-07-01

Full Text Available This study aims to prepare biodegradable films from cassava starch, poly (butylene adipate-co-terephthalate (PBAT, and montmorillonite (MMT using blow-extrusion process and analyze the effects of different types and concentrations of MMT on the microstructure, physicochemical, and mechanical properties of the resulting films. The films were produced by blending 30% of PBAT with glycerol (17.5%, starch (49.0-52.5%, and four different types of montmorillonite (Cloisite® Na+, 10A, 15A, and 30B at two different concentrations (1.75% and 3.5%. All the films prepared in this study showed an increase in the basal spacing of MMT layers. In particular, the films with 10A and 30B showed the highest increase in intercalation basal spacing, suggesting the formation of intercalated composites. The addition of nanoclays decreased the elongation of films. The addition of Cloisite® 10A resulted in films with the lowest WVP values and the highest stability to water adsorption under different RH conditions.

Deoxygenation of methyl laurate over Ni based catalysts: Influence of supports

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Xia, Xiaoqiang; Chen, Hui; Bi, Yadong; Hu, Jianli

2017-10-01

The use of a series of nickel based catalysts supported over HZSM-5, Al2O3, C and ZrO2 in the deoxygenation of methyl laurate shows that the deoxygenation activity and deoxygenation pathway of nickel based catalysts can be affected by properties of catalysts. In the absence of H2, β-elimination of methyl laurate is the dominant reaction and a small amount of laurate acid is converted into undecane by direct decarboxylation. At the same time, the highly acidic support HZSM-5 gave higher conversion and C11 alkane selectivity. In the presence of H2, Ni/HZSM-5 catalyst showed a significantly high deoxygenation activity, producing 71% alkanes by methyl laurate conversion at 280 °C and 4MPa H2. While as on mildly acidic (Al2O3) and neutral (C) supports, a restricted hydrodeoxygenation activity was achieved but more oxygenate products were yielded. According to the analysis of intermediate product, the deoxygenation reaction of methyl laurate follows three distinct pathways: in the absence of H2, decarboxylation: C11H23COOCH3→C11H23COOH→C11H24; in the presence of H2, decarbonylation: C11H23COOCH3→C11H23COOH→C11H23CHO→C11H24; and hydrodeoxygenation: C11H23COOCH3 →C11H23COOH→C11H23CHO→C12H25OH→C12H26

A genome-wide methylation study on obesity: differential variability and differential methylation.

Science.gov (United States)

Xu, Xiaojing; Su, Shaoyong; Barnes, Vernon A; De Miguel, Carmen; Pollock, Jennifer; Ownby, Dennis; Shi, Hidong; Zhu, Haidong; Snieder, Harold; Wang, Xiaoling

2013-05-01

Besides differential methylation, DNA methylation variation has recently been proposed and demonstrated to be a potential contributing factor to cancer risk. Here we aim to examine whether differential variability in methylation is also an important feature of obesity, a typical non-malignant common complex disease. We analyzed genome-wide methylation profiles of over 470,000 CpGs in peripheral blood samples from 48 obese and 48 lean African-American youth aged 14-20 y old. A substantial number of differentially variable CpG sites (DVCs), using statistics based on variances, as well as a substantial number of differentially methylated CpG sites (DMCs), using statistics based on means, were identified. Similar to the findings in cancers, DVCs generally exhibited an outlier structure and were more variable in cases than in controls. By randomly splitting the current sample into a discovery and validation set, we observed that both the DVCs and DMCs identified from the first set could independently predict obesity status in the second set. Furthermore, both the genes harboring DMCs and the genes harboring DVCs showed significant enrichment of genes identified by genome-wide association studies on obesity and related diseases, such as hypertension, dyslipidemia, type 2 diabetes and certain types of cancers, supporting their roles in the etiology and pathogenesis of obesity. We generalized the recent finding on methylation variability in cancer research to obesity and demonstrated that differential variability is also an important feature of obesity-related methylation changes. Future studies on the epigenetics of obesity will benefit from both statistics based on means and statistics based on variances.

Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data processing

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Almeida Diogo

2016-10-01

Full Text Available Measuring differential methylation of the DNA is the nowadays most common approach to linking epigenetic modifications to diseases (called epigenome-wide association studies, EWAS. For its low cost, its efficiency and easy handling, the Illumina HumanMethylation450 BeadChip and its successor, the Infinium MethylationEPIC BeadChip, is the by far most popular techniques for conduction EWAS in large patient cohorts. Despite the popularity of this chip technology, raw data processing and statistical analysis of the array data remains far from trivial and still lacks dedicated software libraries enabling high quality and statistically sound downstream analyses. As of yet, only R-based solutions are freely available for low-level processing of the Illumina chip data. However, the lack of alternative libraries poses a hurdle for the development of new bioinformatic tools, in particular when it comes to web services or applications where run time and memory consumption matter, or EWAS data analysis is an integrative part of a bigger framework or data analysis pipeline. We have therefore developed and implemented Jllumina, an open-source Java library for raw data manipulation of Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data, supporting the developer with Java functions covering reading and preprocessing the raw data, down to statistical assessment, permutation tests, and identification of differentially methylated loci. Jllumina is fully parallelizable and publicly available at http://dimmer.compbio.sdu.dk/download.html

NGSmethDB 2017: enhanced methylomes and differential methylation

Science.gov (United States)

Lebrón, Ricardo; Gómez-Martín, Cristina; Carpena, Pedro; Bernaola-Galván, Pedro; Barturen, Guillermo; Hackenberg, Michael; Oliver, José L.

2017-01-01

The 2017 update of NGSmethDB stores whole genome methylomes generated from short-read data sets obtained by bisulfite sequencing (WGBS) technology. To generate high-quality methylomes, stringent quality controls were integrated with third-part software, adding also a two-step mapping process to exploit the advantages of the new genome assembly models. The samples were all profiled under constant parameter settings, thus enabling comparative downstream analyses. Besides a significant increase in the number of samples, NGSmethDB now includes two additional data-types, which are a valuable resource for the discovery of methylation epigenetic biomarkers: (i) differentially methylated single-cytosines; and (ii) methylation segments (i.e. genome regions of homogeneous methylation). The NGSmethDB back-end is now based on MongoDB, a NoSQL hierarchical database using JSON-formatted documents and dynamic schemas, thus accelerating sample comparative analyses. Besides conventional database dumps, track hubs were implemented, which improved database access, visualization in genome browsers and comparative analyses to third-part annotations. In addition, the database can be also accessed through a RESTful API. Lastly, a Python client and a multiplatform virtual machine allow for program-driven access from user desktop. This way, private methylation data can be compared to NGSmethDB without the need to upload them to public servers. Database website: http://bioinfo2.ugr.es/NGSmethDB. PMID:27794041

MethylMeter(®): bisulfite-free quantitative and sensitive DNA methylation profiling and mutation detection in FFPE samples.

Science.gov (United States)

McCarthy, David; Pulverer, Walter; Weinhaeusel, Andreas; Diago, Oscar R; Hogan, Daniel J; Ostertag, Derek; Hanna, Michelle M

2016-06-01

Development of a sensitive method for DNA methylation profiling and associated mutation detection in clinical samples. Formalin-fixed and paraffin-embedded tumors received by clinical laboratories often contain insufficient DNA for analysis with bisulfite or methylation sensitive restriction enzymes-based methods. To increase sensitivity, methyl-CpG DNA capture and Coupled Abscription PCR Signaling detection were combined in a new assay, MethylMeter(®). Gliomas were analyzed for MGMT methylation, glioma CpG island methylator phenotype and IDH1 R132H. MethylMeter had 100% assay success rate measuring all five biomarkers in formalin-fixed and paraffin-embedded tissue. MGMT methylation results were supported by survival and mRNA expression data. MethylMeter is a sensitive and quantitative method for multitarget DNA methylation profiling and associated mutation detection. The MethylMeter-based GliomaSTRAT assay measures methylation of four targets and one mutation to simultaneously grade gliomas and predict their response to temozolomide. This information is clinically valuable in management of gliomas.

Aberrant DNA methylation of matrix remodeling and cell adhesion related genes in pterygium.

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Andri K Riau

Full Text Available BACKGROUND: Pterygium is a common ocular surface disease characterized by abnormal epithelial and fibrovascular proliferation, invasion, and matrix remodeling. This lesion, which migrates from the periphery to the center of the cornea, impairs vision and causes considerable irritation. The mechanism of pterygium formation remains ambiguous, and current treatment is solely surgical excision, with a significant risk of recurrence after surgery. Here, we investigate the role of methylation in DNA sequences that regulate matrix remodeling and cell adhesion in pterygium formation. METHODOLOGY/PRINCIPAL FINDINGS: Pterygium and uninvolved conjunctiva samples were obtained from the same eye of patients undergoing surgery. The EpiTYPER Sequenom technology, based on differential base cleavage and bisulfite sequencing was used to evaluate the extent of methylation of 29 matrix and adhesion related genes. In pterygium, three CpG sites at -268, -32 and -29 bp upstream of transglutaminase 2 (TGM-2 transcription initiation were significantly hypermethylated (p<0.05, whereas hypomethylation was detected at CpGs +484 and +602 bp downstream of matrix metalloproteinase 2 (MMP-2 transcription start site, and -809, -762, -631 and -629 bp upstream of the CD24 transcription start site. RT-qPCR, western blot and immunofluorescent staining showed that transcript and protein expression were reduced for TGM-2 and increased for MMP-2 and CD24. Inhibition of methylation in cultured conjunctival epithelial cells increased these transcripts. CONCLUSIONS/SIGNIFICANCE: We found regions of aberrant DNA methylation which were consistent with alteration of TGM-2, MMP-2, and CD24 transcript and protein expression, and that inhibition of methylation in cultured cells can increase the expression of these genes. Since these genes were related to cell adhesion and matrix remodeling, dysregulation may lead to fibroblastic and neovascular changes and pterygium formation. These results

A novel integrated approach for path following and directional stability control of road vehicles after a tire blow-out

Science.gov (United States)

Wang, Fei; Chen, Hong; Guo, Konghui; Cao, Dongpu

2017-09-01

The path following and directional stability are two crucial problems when a road vehicle experiences a tire blow-out or sudden tire failure. Considering the requirement of rapid road vehicle motion control during a tire blow-out, this article proposes a novel linearized decoupling control procedure with three design steps for a class of second order multi-input-multi-output non-affine system. The evaluating indicators for controller performance are presented and a performance related control parameter distribution map is obtained based on the stochastic algorithm which is an innovation for non-blind parameter adjustment in engineering implementation. The analysis on the robustness of the proposed integrated controller is also performed. The simulation studies for a range of driving conditions are conducted, to demonstrate the effectiveness of the proposed controller.

Stefan blowing effect on bioconvective flow of nanofluid over a solid rotating stretchable disk

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N.A. Latiff

2016-12-01

Full Text Available A mathematical model for the unsteady forced convection over rotating stretchable disk in nanofluid containing micro-organisms and taking into account Stefan blowing effect is presented theoretically and numerically. Appropriate transformations are used to transform the governing boundary layer equations into non-linear ordinary differential equations, before being solved numerically using the Runge-Kutta-Fehlberg method. The effect of the governing parameters on the dimensionless velocities, temperature, nanoparticle volume fraction (concentration, density of motile microorganisms as well as on the local skin friction, local Nusselt, Sherwood number and motile microorganisms numbers are thoroughly examined via graphs. It is observed that the Stefan blowing increases the local skin friction and reduces the heat transfer, mass transfer and microorganism transfer rates. The numerical results are in good agreement with those obtained from previous literature. Physical quantities results from this investigation show that the effects of higher disk stretching strength and suction case provides a good medium to enhance the heat, mass and microorganisms transfer compared to blowing case.

Aerodynamic drag reduction of a simplified squareback vehicle using steady blowing

Energy Technology Data Exchange (ETDEWEB)

Littlewood, R.P. [LaVisionUK Ltd, Grove, Oxon (United Kingdom); Passmore, M.A. [Loughborough University, Department of Aeronautical and Automotive Engineering, Loughborough (United Kingdom)

2012-08-15

A large contribution to the aerodynamic drag of a vehicle arises from the failure to fully recover pressure in the wake region, especially on squareback configurations. A degree of base pressure recovery can be achieved through careful shape optimisation, but the freedom of an automotive aerodynamicist to implement significant shape changes is limited by a variety of additional factors such styling, ergonomics and loading capacity. Active flow control technologies present the potential to create flow field modifications without the need for external shape changes and have received much attention in previous years within the aeronautical industry and, more recently, within the automotive industry. In this work the influence of steady blowing applied at a variety of angles on the roof trailing edge of a simplified 1/4 scale squareback style vehicle has been investigated. Hot-wire anemometry, force balance measurements, surface pressure measurements and PIV have been used to investigate the effects of the steady blowing on the vehicle wake structures and the resulting body forces. The energy consumption of the steady jet is calculated and is used to deduce an aerodynamic drag power change. Results show that overall gains can be achieved; however, the large mass flow rate required restricts the applicability of the technique to road vehicles. Means by which the mass flow rate requirements of the jet may be reduced are discussed and suggestions for further work put forward. (orig.)

Blow-up of solutions to the rotation b-family system modeling equatorial water waves

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Min Zhu

2018-03-01

Full Text Available We consider the blow-up mechanism to the periodic generalized rotation b-family system (R-b-family system. This model can be derived from the f-plane governing equations for the geographical water waves with a constant underlying current in the equatorial water waves with effect of the Coriolis force. When b=2, it is a rotation two-component Camassa-Holm (R2CH system. We consider the periodic R2CH system when linear dispersion is absent (which model is called r2CH system and derive two finite-time blow-up results.

Weak maser emission of methyl formate toward Sagittarius B2(N) in the green bank telescope PRIMOS survey

Energy Technology Data Exchange (ETDEWEB)

Faure, A.; Wiesenfeld, L. [UJF-Grenoble 1/CNRS-INSU, Institut de Planétologie et d' Astrophysique de Grenoble (IPAG) UMR 5274, Grenoble F-38041 (France); Remijan, A. J. [National Radio Astronomy Observatory, 520 Edgemont Road, Charlottesville, VA 22903 (United States); Szalewicz, K. [Department of Physics and Astronomy, University of Delaware, Newark, DE 19716 (United States)

2014-03-10

A non-LTE radiative transfer treatment of cis-methyl formate (HCOOCH{sub 3}) rotational lines is presented for the first time using a set of theoretical collisional rate coefficients. These coefficients have been computed in the temperature range 5-30 K by combining coupled-channel scattering calculations with a high accuracy potential energy surface for HCOOCH{sub 3}-He. The results are compared to observations toward the Sagittarius B2(N) molecular cloud using the publicly available PRIMOS survey from the Green Bank Telescope. A total of 49 low-lying transitions of methyl formate, with upper levels below 25 K, are identified. These lines are found to probe a presumably cold (∼30 K), moderately dense (∼10{sup 4} cm{sup –3}), and extended region surrounding Sgr B2(N). The derived column density of ∼4 × 10{sup 14} cm{sup –2} is only a factor of ∼10 larger than the column density of the trans conformer in the same source. Provided that the two conformers have the same spatial distribution, this result suggests that strongly non-equilibrium processes must be involved in their synthesis. Finally, our calculations show that all detected emission lines with a frequency below 30 GHz are (collisionally pumped) weak masers amplifying the continuum of Sgr B2(N). This result demonstrates the importance and generality of non-LTE effects in the rotational spectra of complex organic molecules at centimeter wavelengths.

Enzymatic methylation of band 3 anion transporter in intact human erythrocytes

International Nuclear Information System (INIS)

Lou, L.L.; Clarke, S.

1987-01-01

Band 3, the anion transport protein of erythrocyte membranes, is a major methyl-accepting substrate of the intracellular erythrocyte protein carboxyl methyltransferase (S-adenosyl-L-methionine: protein-D-aspartate O-methyltransferase; EC 2.1.1.77). The localization of methylation sites in intact cells by analysis of proteolytic fragments indicated that sites were present in the cytoplasmic N-terminal domain as well as the membranous C-terminal portion of the polypeptide. The amino acid residues that serve as carboxyl methylation sites of the erythrocyte anion transporter were also investigated. 3 H-Methylated band 3 was purified from intact erythrocytes incubated with L-[methyl- 3 H]methionine and from trypsinized and lysed erythrocytes incubated with S-adenosyl-L-[methyl- 3 H]methionine. After proteolytic digestion with carboxypeptidase Y, D-aspartic acid beta-[ 3 H]methyl ester was isolated in low yields (9% and 1%, respectively) from each preparation. The bulk of the radioactivity was recovered as [ 3 H]methanol, and the amino acid residue(s) originally associated with these methyl groups could not be determined. No L-aspartic acid beta-[ 3 H]methyl ester or glutamyl gamma-[ 3 H]methyl ester was detected. The formation of D-aspartic acid beta-[ 3 H]methyl esters in this protein in intact cells resulted from protein carboxyl methyltransferase activity since it was inhibited by adenosine and homocysteine thiolactone, which increases the intracellular concentration of the potent product inhibitor S-adenosylhomocysteine, and cycloleucine, which prevents the formation of the substrate S-adenosyl-L-[methyl- 3 H]methionine

Three dimensional analysis of histone methylation patterns in normal and tumor cell nuclei

Directory of Open Access Journals (Sweden)

M Cremer

2009-06-01

Full Text Available Histone modifications represent an important epigenetic mechanism for the organization of higher order chromatin structure and gene regulation. Methylation of position-specific lysine residues in the histone H3 and H4 amino termini has been linked with the formation of constitutive and facultative heterochromatin as well as with specifically repressed single gene loci. Using an antibody, directed against dimethylated lysine 9 of histone H3 and several other lysine methylation sites, we visualized the nuclear distribution pattern of chromatin flagged by these methylated lysines in 3D preserved nuclei of normal and malignant cell types. Optical confocal serial sections were used for a quantitative evaluation. We demonstrate distinct differences of these histone methylation patterns among nuclei of different cell types after exit of the cell cycle. Changes in the pattern formation were also observed during the cell cycle. Our data suggest an important role of methylated histones in the reestablishment of higher order chromatin arrangements during telophase/early G1. Cell type specific histone methylation patterns are possibly causally involved in the formation of cell type specific heterochromatin compartments, composed of (pericentromeric regions and chromosomal subregions from neighboring chromosome territories, which contain silent genes.

Changes in IL12A methylation pattern in livers from mice fed DDC.

Science.gov (United States)

Oliva, J; French, S W

2012-04-01

Mallory-Denk body (MDB) formation is a component of alcoholic and non alcoholic hepatitis. Proteins of the TLR pathway were shown to be involved in the formation of MDBs, in mice fed DDC. TLR genes are upregulated and SAMe supplementation prevents this up regulation and prevented the formation of MDBs. DNA of livers from control mice, from mice fed DDC 10weeks, refed 1week with DDC and with DDC+SAMe were extracted and used to study the methylation pattern of genes involves in the TLR pathway. A PCR array was used to analyze it. Using PCR arrays for the mouse TLR pathway,24 genes were found whose expression of IL12A was regulated by the methylation of its gene. DDC fed for 10weeks reduced the methylation of the IL12A gene expression. This expression was also reduced when DDC was refed. However, when SAMe was fed, the intermediate level methylation of IL12A was up regulated to the intermediate level and the methylation of the promoter decreased compared to DDC refeeding or DDC 10weeks. IL12A is known to induce the production of IFNg by NK and L(T). We showed in a previous publication that IFNg is one of the major cytokines involved in the induction of MDB formation. The low expression of IL12A associated with the intermediate methylation of its promoter could explain one step in the mechanism which leads to the formation of MDBs. Copyright © 2012 Elsevier Inc. All rights reserved.

Hypersonic Boundary Layer Measurements with Variable Blowing Rates Using Molecular Tagging Velocimetry

Science.gov (United States)

Bathel, Brett F.; Danehy, Paul M.; Johansen, Craig T.; Jones, Stephen B.; Goyne, Christopher P.

2012-01-01

Measurements of mean and instantaneous streamwise velocity profiles in a hypersonic boundary layer with variable rates of mass injection (blowing) of nitrogen dioxide (NO2) were obtained over a 10-degree half-angle wedge model. The NO2 was seeded into the flow from a slot located 29.4 mm downstream of the sharp leading edge. The top surface of the wedge was oriented at a 20 degree angle in the Mach 10 flow, yielding an edge Mach number of approximately 4.2. The streamwise velocity profiles and streamwise fluctuating velocity component profiles were obtained using a three-laser NO2->NO photolysis molecular tagging velocimetry method. Observed trends in the mean streamwise velocity profiles and profiles of the fluctuating component of streamwise velocity as functions of the blowing rate are described. An effort is made to distinguish between the effect of blowing rate and wall temperature on the measured profiles. An analysis of the mean velocity profiles for a constant blowing rate is presented to determine the uncertainty in the measurement for different probe laser delay settings. Measurements of streamwise velocity were made to within approximately 120 gm of the model surface. The streamwise spatial resolution in this experiment ranged from 0.6 mm to 2.6 mm. An improvement in the spatial precision of the measurement technique has been made, with spatial uncertainties reduced by about a factor of 2 compared to previous measurements. For the quiescent flow calibration measurements presented, uncertainties as low as 2 m/s are obtained at 95% confidence for long delay times (25 gs). For the velocity measurements obtained with the wind tunnel operating, average single-shot uncertainties of less than 44 m/s are obtained at 95% confidence with a probe laser delay setting of 1 gs. The measurements were performed in the 31-inch Mach 10 Air Tunnel at the NASA Langley Research Center.

Acid-base properties of 1-methyl-1,4-dilhydroborabenzene, CH3BC5H6

International Nuclear Information System (INIS)

Sullivan, S.A.; Sandford, H.; Beauchamp, J.L.; Ashe, A.J. III

1978-01-01

Ion cyclotron resonance techniques are employed to determine the gas-phase Bronsted and Lewis acidities as well as the Bronsted basicity of 1-methyl-1,4-dihydroborabenzene, CH 3 BC 5 H 6 . The ring proton is found to be highly acidic with PA(CH 3 BC 5 H 5 - ) = 337 +- 3 kcal/mol. This acidity results from the formation of 6π electron aromatic anion CH 3 BC 5 H 5 - , which is isoelectronic with toluene. Both the Lewis acidity toward F - as a reference base and the proton basicity of the parent molecule suggest that there is little interaction between the diene π system and the electron-deficient boron. This is further confirmed by the similarity of both negative and positive ion chemistry of the borabenzene to that of aliphatic boranes

Investigation on thermomechanical properties of poly (l-lactic acid) for the stretch blow moulding process of bioresorbable vascular scaffold

Science.gov (United States)

Wei, Huidong; Menary, Gary

2017-10-01

Stretch blow moulding process has been used for the manufacture of bioresorbable vascular scaffold (BVS) made by poly (l-lactic acid) (PLLA) to improve its mechanical performance. In order to better understand the process, thermomechanical properties of PLLA were investigated by experimental method. Extruded PLLA sheets were biaxial stretched under strain rate of 1s-1, 4s-1 and 16s-1 to simulate the deformation process applicable in the blow moulding process. Both the equal-biaxial stretch and constant-width stretch were conducted by an in-house developed equipment. By differential scanning calorimeter (DSC), thermal analysis for materials before and after stretch were compared to evaluate the microstructural change of PLLA materials in the deformation process. A constitutive model based on glass rubber model was presented to simulate the mechanical behaviour of PLLA above glass transition under biaxial deformation.

Controlled longitudinal emittance blow-up using band-limited phase noise in CERN PSB

Science.gov (United States)

Quartullo, D.; Shaposhnikova, E.; Timko, H.

2017-07-01

Controlled longitudinal emittance blow-up (from 1 eVs to 1.4 eVs) for LHC beams in the CERN PS Booster is currently achievied using sinusoidal phase modulation of a dedicated high-harmonic RF system. In 2021, after the LHC injectors upgrade, 3 eVs should be extracted to the PS. Even if the current method may satisfy the new requirements, it relies on low-power level RF improvements. In this paper another method of blow-up was considered, that is the injection of band-limited phase noise in the main RF system (h=1), never tried in PSB but already used in CERN SPS and LHC, under different conditions (longer cycles). This technique, which lowers the peak line density and therefore the impact of intensity effects in the PSB and the PS, can also be complementary to the present method. The longitudinal space charge, dominant in the PSB, causes significant synchrotron frequency shifts with intensity, and its effect should be taken into account. Another complication arises from the interaction of the phase loop with the injected noise, since both act on the RF phase. All these elements were studied in simulations of the PSB cycle with the BLonD code, and the required blow-up was achieved.

Multimodal nonlinear microscope based on a compact fiber-format laser source

Science.gov (United States)

Crisafi, Francesco; Kumar, Vikas; Perri, Antonio; Marangoni, Marco; Cerullo, Giulio; Polli, Dario

2018-01-01

We present a multimodal non-linear optical (NLO) laser-scanning microscope, based on a compact fiber-format excitation laser and integrating coherent anti-Stokes Raman scattering (CARS), stimulated Raman scattering (SRS) and two-photon-excitation fluorescence (TPEF) on a single platform. We demonstrate its capabilities in simultaneously acquiring CARS and SRS images of a blend of 6-μm poly(methyl methacrylate) beads and 3-μm polystyrene beads. We then apply it to visualize cell walls and chloroplast of an unprocessed fresh leaf of Elodea aquatic plant via SRS and TPEF modalities, respectively. The presented NLO microscope, developed in house using off-the-shelf components, offers full accessibility to the optical path and ensures its easy re-configurability and flexibility.

Porphyromonas gingivalis hydrogen sulfide enhances methyl mercaptan-induced pathogenicity in mouse abscess formation.

Science.gov (United States)

Nakamura, Suguru; Shioya, Koki; Hiraoka, B Yukihiro; Suzuki, Nao; Hoshino, Tomonori; Fujiwara, Taku; Yoshinari, Nobuo; Ansai, Toshihiro; Yoshida, Akihiro

2018-04-01

Porphyromonas gingivalis produces hydrogen sulfide (H2S) from l-cysteine. However, the role of H2S produced by P. gingivalis in periodontal inflammation is unclear. In this study, we identified the enzyme that catalyses H2S production from l-cysteine and analysed the role of H2S using a mouse abscess model. The enzyme identified was identical to methionine γ-lyase (PG0343), which produces methyl mercaptan (CH3SH) from l-methionine. Therefore, we analysed H2S and CH3SH production by P. gingivalis W83 and a PG0343-deletion mutant (ΔPG0343) with/without l-cysteine and/or l-methionine. The results indicated that CH3SH is produced constitutively irrespective of the presence of l-methionine, while H2S was greatly increased by both P. gingivalis W83 and ΔPG0343 in the presence of l-cysteine. In contrast, CH3SH production by ΔPG0343 was absent irrespective of the presence of l-methionine, and H2S production was eliminated in the absence of l-cysteine. Thus, CH3SH and H2S production involves different substrates, l-methionine or l-cysteine, respectively. Based on these characteristics, we analysed the roles of CH3SH and H2S in abscess formation in mice by P. gingivalis W83 and ΔPG0343. Abscess formation by P. gingivalis W83, but not ΔPG0343, differed significantly in the presence and absence of l-cysteine. In addition, the presence of l-methionine did not affect the size of abscesses generated by P. gingivalis W83 and ΔPG0343. Therefore, we conclude that H2S produced by P. gingivalis does not induce inflammation; however, H2S enhances inflammation caused by CH3SH. Thus, these results suggest the H2S produced by P. gingivalis plays a supportive role in inflammation caused by methionine γ-lyase.

Self-contained anti-static adapter for compressed gas dust blowing devices

International Nuclear Information System (INIS)

Schwartz, L.H.; Miller, S.W.; Severud, C.N. Jr.

1984-01-01

An anti-static adapter which enhances the operation of compressed gas dust blowing devices by allowing the safe use of a radioactive source to ionize a gas stream. The adapter may be used and handled safely without special precautions on the part of the operator

NGSmethDB 2017: enhanced methylomes and differential methylation.

Science.gov (United States)

Lebrón, Ricardo; Gómez-Martín, Cristina; Carpena, Pedro; Bernaola-Galván, Pedro; Barturen, Guillermo; Hackenberg, Michael; Oliver, José L

2017-01-04

The 2017 update of NGSmethDB stores whole genome methylomes generated from short-read data sets obtained by bisulfite sequencing (WGBS) technology. To generate high-quality methylomes, stringent quality controls were integrated with third-part software, adding also a two-step mapping process to exploit the advantages of the new genome assembly models. The samples were all profiled under constant parameter settings, thus enabling comparative downstream analyses. Besides a significant increase in the number of samples, NGSmethDB now includes two additional data-types, which are a valuable resource for the discovery of methylation epigenetic biomarkers: (i) differentially methylated single-cytosines; and (ii) methylation segments (i.e. genome regions of homogeneous methylation). The NGSmethDB back-end is now based on MongoDB, a NoSQL hierarchical database using JSON-formatted documents and dynamic schemas, thus accelerating sample comparative analyses. Besides conventional database dumps, track hubs were implemented, which improved database access, visualization in genome browsers and comparative analyses to third-part annotations. In addition, the database can be also accessed through a RESTful API. Lastly, a Python client and a multiplatform virtual machine allow for program-driven access from user desktop. This way, private methylation data can be compared to NGSmethDB without the need to upload them to public servers. Database website: http://bioinfo2.ugr.es/NGSmethDB. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Genome-Wide Analysis of DNA Methylation During Ovule Development of Female-Sterile Rice fsv1

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Helian Liu

2017-11-01

Full Text Available The regulation of female fertility is an important field of rice sexual reproduction research. DNA methylation is an essential epigenetic modification that dynamically regulates gene expression during development processes. However, few reports have described the methylation profiles of female-sterile rice during ovule development. In this study, ovules were continuously acquired from the beginning of megaspore mother cell meiosis until the mature female gametophyte formation period, and global DNA methylation patterns were compared in the ovules of a high-frequency female-sterile line (fsv1 and a wild-type rice line (Gui99 using whole-genome bisulfite sequencing (WGBS. Profiling of the global DNA methylation revealed hypo-methylation, and 3471 significantly differentially methylated regions (DMRs were observed in fsv1 ovules compared with Gui99. Based on functional annotation and Kyoto encyclopedia of genes and genomes (KEGG pathway analysis of differentially methylated genes (DMGs, we observed more DMGs enriched in cellular component, reproduction regulation, metabolic pathway, and other pathways. In particular, many ovule development genes and plant hormone-related genes showed significantly different methylation patterns in the two rice lines, and these differences may provide important clues for revealing the mechanism of female gametophyte abortion.

Asymptotic analysis of reaction-diffusion-advection problems: Fronts with periodic motion and blow-up

Science.gov (United States)

Nefedov, Nikolay

2017-02-01

This is an extended variant of the paper presented at MURPHYS-HSFS 2016 conference in Barcelona. We discuss further development of the asymptotic method of differential inequalities to investigate existence and stability of sharp internal layers (fronts) for nonlinear singularly perturbed periodic parabolic problems and initial boundary value problems with blow-up of fronts for reaction-diffusion-advection equations. In particular, we consider periodic solutions with internal layer in the case of balanced reaction. For the initial boundary value problems we prove the existence of fronts and give their asymptotic approximation including the new case of blowing-up fronts. This case we illustrate by the generalised Burgers equation.

10 blows that stopped nuclear power

International Nuclear Information System (INIS)

Komanoff, C.

1991-01-01

The author describes these 10 blows in chronological order, 1973 through 1981, namely: (1) Arab Oil Embargo; (2) India Explodes a Bomb; (3) NRC replaces AEC; (4) Fire at Browns Ferry; (5) General Electric and NRC Engineers switch Sides; (6) Amory Lovins Recasts the Energy Debate; (7) The Seabrook Occupation; (8) The Three Mile Island Accident; (9) Federal Reserve Tightens the Money Supply; and (1) Pacific Gas and Electric Co. Gets it Backwards at Diablo Canyon. he stops there, not including the Washington Public Power Supply fiasco and the Chernobyl disaster, feeling nuclear expansion was essentially foreclosed without them. Further, he feels nuclear power seems fated to be forever at the mercy of forces beyond its control

Oscillation of Vortex Breakdown Location and Blowing Control of Time-Averaged Location

National Research Council Canada - National Science Library

Mitchell, Anthony

2000-01-01

The goal of this research is the control of leading-edge vortex breakdown location utilizing along-the-core blowing near the apex on the leeward surface of sharp-edged, slender, delta wings at high angles of attack...

Isomorphism of 2-methylnaphthalene and 2-halonaphthalenes as a revealer of a special interaction between methyl and halogen

Science.gov (United States)

Calvet, T.; Cuevas-Diarte, M. A.; Haget, Y.; Mondieig, D.; Kok, I. C.; Verdonk, M. L.; Van Miltenburg, J. C.; Oonk, H. A. J.

1999-03-01

The systems 2-methylnaphthalene+2-chloronaphthalene and 2-methylnaphthalene+2-bromonaphthalene belong to the exceptional group of binary systems where the formation of mixed crystals goes together with a solid-liquid phase diagram with a maximum. For these systems a thermodynamic analysis is presented which is based on new phase diagram and thermochemical data. The excess Gibbs energies, excess enthalpies, and excess entropies of the mixed crystalline state all are negative. These properties correspond to a net attraction between methyl and substituted halogen. Additional evidence of such an attraction is given by the outcome of a statistical search on intermolecular contacts, in the crystalline state of pure substances, among methyl+halogen, halogen+halogen, and methyl+methyl.

Species composition of carrion blow flies in northern Thailand: altitude appraisal.

Science.gov (United States)

Moophayak, Kittikhun; Klong-Klaew, Tunwadee; Sukontason, Kom; Kurahashi, Hiromu; Tomberlin, Jeffery K; Sukontason, Kabkaew L

2014-01-01

Distribution and occurrence of blow flies of forensic importance was performed during 2007 and 2008 in Chiang Mai and Lampang Provinces, northern Thailand. Surveys were conducted in forested areas for 30 minutes using a sweep net to collected flies attracted to a bait. A total of 2,115 blow flies belonging to six genera and 14 species were collected; Chrysomya megacephala (Fabricius) (44.7%), C. pinguis (Walker) (15.1%), C. chani Kurahashi (9.3%), C. thanomthini Kurahashi & Tumrasvin (0.3%); Achoetandrus rufifacies (Macquart) (10.5%), A. villeneuvi (Patton) (2.2%); Lucilia papuensis Macquart (2.2%), L. porphyrina (Walker) (12.4%), L. sinensis Aubertin (0.7%); Hemipyrellia ligurriens (Wiedemann) (1.3%), H. pulchra (Wiedemann) (0.1%); Hypopygiopsis infumata (Bigot) (0.6%), Hy. tumrasvini Kurahashi (0.2%) and Ceylonomyia nigripes Aubertin (0.4%). Among them, C. megacephala was the predominant species collected, particularly in the summer. The species likely to prevail in highland areas are C. pinguis, C. thanomthini, Hy. tumrasvini, L. papuensis and L. porphyrina.

SPECIES COMPOSITION OF CARRION BLOW FLIES IN NORTHERN THAILAND: ALTITUDE APPRAISAL

Directory of Open Access Journals (Sweden)

Kittikhun Moophayak

2014-04-01

Full Text Available Distribution and occurrence of blow flies of forensic importance was performed during 2007 and 2008 in Chiang Mai and Lampang Provinces, northern Thailand. Surveys were conducted in forested areas for 30 minutes using a sweep net to collected flies attracted to a bait. A total of 2,115 blow flies belonging to six genera and 14 species were collected; Chrysomya megacephala (Fabricius (44.7%, C. pinguis (Walker (15.1%, C. chani Kurahashi (9.3%, C. thanomthini Kurahashi & Tumrasvin (0.3%; Achoetandrus rufifacies (Macquart (10.5%, A. villeneuvi (Patton (2.2%; Lucilia papuensis Macquart (2.2%, L. porphyrina (Walker (12.4%, L. sinensis Aubertin (0.7%; Hemipyrellia ligurriens(Wiedemann (1.3%, H. pulchra(Wiedemann (0.1%; Hypopygiopsis infumata (Bigot (0.6%, Hy. tumrasvini Kurahashi (0.2% and Ceylonomyia nigripes Aubertin (0.4%. Among them, C. megacephala was the predominant species collected, particularly in the summer. The species likely to prevail in highland areas are C. pinguis, C. thanomthini, Hy. tumrasvini, L. papuensis and L. porphyrina.

Method to reduce arc blow during DC arc welding of pipelines

Energy Technology Data Exchange (ETDEWEB)

Espina-Hernandez, J. H.; Rueda-Morales, G.L.; Caleyo, F.; Hallen, J. M. [Instituto Politecnico Nacional, Mexico, (Mexico); Lopez-Montenegro, A.; Perz-Baruch, E. [Pemex Exploracion y Produccion, Tabasco, (Mexico)

2010-07-01

Steel pipelines are huge ferromagnetic structures and can be easily subjected to arc blow during the DC arc welding process. The development of methods to avoid arc blow during pipeline DC arc welding is a major objective in the pipeline industry. This study developed a simple procedure to compensate the residual magnetic field in the groove during DC arc welding. A Gaussmeter was used to perform magnetic flux density measurements in pipelines in southern Mexico. These data were used to perform magnetic finite element simulations using FEMM. Different variables were studied such as the residual magnetic field in the groove or the position of the coil with respect to the groove. An empirical predictive equation was developed from these trials to compensate for the residual magnetic field. A new method of compensating for the residual magnetic field in the groove by selecting the number of coil turns and the position of the coil with respect to the groove was established.

Base Flip in DNA Studied by Molecular Dynamics Simulationsof Differently-Oxidized Forms of Methyl-Cytosine

Directory of Open Access Journals (Sweden)

Mahdi Bagherpoor Helabad

2014-07-01

Full Text Available Distortions in the DNA sequence, such as damage or mispairs, are specifically recognized and processed by DNA repair enzymes. Many repair proteins and, in particular, glycosylases flip the target base out of the DNA helix into the enzyme’s active site. Our molecular dynamics simulations of DNA with intact and damaged (oxidized methyl-cytosine show that the probability of being flipped is similar for damaged and intact methyl-cytosine. However, the accessibility of the different 5-methyl groups allows direct discrimination of the oxidized forms. Hydrogen-bonded patterns that vary between methyl-cytosine forms carrying a carbonyl oxygen atom are likely to be detected by the repair enzymes and may thus help target site recognition.

Cytosine methylation does not affect binding of transcription factor Sp1

International Nuclear Information System (INIS)

Harrington, M.A.; Jones, P.A.; Imagawa, M.; Karin, M.

1988-01-01

DNA methylation may be a component of a multilevel control mechanism that regulates eukaryotic gene expression. The authors used synthetic oligonucleotides to investigate the effect of cytosine methylation on the binding of the transcription factor Sp1 to its target sequence (a G+C-rich sequence known as a GC box). Concatemers of double-stranded 14-mers containing a GC box successfully competed with the human metallothionein IIA promoter for binding to Sp1 in DNase I protection experiments. The presence of 5-methylcytosine in the CpG sequence of the GC box did not influence Sp1 binding. The result was confirmed using double-stranded 20-mers containing 16 base pairs of complementary sequence. Electrophoretic gel retardation analysis of annealed 28-mers containing a GC box incubated with an Sp1-containing HeLa cell nuclear extract demonstrated the formation of DNA-protein complexes; formation of these complexes was not inhibited when an oligomer without a GC box was used as a competitor. Once again, the presence of a 5-methylcytosine residue in the GC box did not influence the binding of the protein to DNA. The results therefore preclude a direct effect of cytosine methylation on Sp1-DNA interactions

The blow-off mechanism of a bluff-body stabilized laminar premixed flame

KAUST Repository

Kedia, Kushal S.; Ghoniem, Ahmed F.

2015-01-01

the end of the recirculation zone. Blow-off started by flame pinching separating the flame into an upstream moving (carried within the recirculation zone) and a downstream convecting (detached from the recirculation zone) flame piece. Within the range

Simulation on the Effect of Bottle Wall Thickness Distribution using Blow Moulding Technique

International Nuclear Information System (INIS)

Suraya, S; Azman, M D; Fatchurrohman, N; Jaafar, A A; Yusoff, A R

2016-01-01

The aims of this study are to assess the deformation behavior of a polymeric material during a blow moulding process. Transient computations of two dimensional model of a PP bottle were performed using ANSYS Polyflow computer code to predict the wall thickness distribution at four different parison's diameter; 8mm, 10mm, 18mm, and 20mm. Effects on the final wall thickness diameter and time step are studied. The simulated data shows that the inflation performance degrades with increasing parison diameter. It is concluded that the blow moulding process using 10mm parison successfully meet the product processing requirements. Factors that contribute to the variation in deformation behaviour of the plastic during the manufacturing process are discussed. (paper)

Solution blow spun Poly(lactic acid)/Hydroxypropyl methylcellulose nanofibers with antimicrobial properties

Science.gov (United States)

Poly(lactic acid) (PLA) nanofibers containing hydroxypropyl methylcellulose (HPMC) and tetracycline hydrochloride (THC) were solution blow spun from two different solvents, chloroform/acetone (CA, 80:20 v/v) and 2,2,2-triflouroethanol (TFE). The diameter distribution, chemical, thermal, thermal stab...

Methylation of zebularine: a quantum mechanical study incorporating interactive 3D pdf graphs.

Science.gov (United States)

Selvam, Lalitha; Vasilyev, Vladislav; Wang, Feng

2009-08-20

Methylation of a cytidine deaminase inhibitor, 1-(beta-D-ribofuranosyl)-2-pyrimidone (i.e., zebularine (zeb)), which produces 1-(beta-D-ribofuranosyl)-5-methyl-2-pyrimidinone (d5), has been investigated using density functional theory models. The optimized structures of zeb and d5 and the valence orbitals primarily responsible for the methylation in d5 are presented using state-of-the-art interactive (on a computer or online) three-dimensional (3D) graphics in a portable document format (pdf) file, 3D-PDF (http://www.web3d.org/x3d/vrml/ ). The facility to embed 3D molecular structures into pdf documents has been developed jointly at Swinburne University of Technology and the National Computational Infrastructure, the Australian National University. The methyl fragment in the base moiety shows little effect on the sugar puckering but apparently affects anisotropic properties, such as condensed Fukui functions. Binding energy spectra, both valence space and core space, are noticeably affected; in particular, in the outer-valence space (e.g., IP < 20 eV). The methyl fragment delocalizes and diffuses into almost all valence space, but orbitals 8 (57a, IP = 12.57 eV), 18 (47a, IP = 14.70 eV), and 37 (28a, IP = 22.15 eV) are identified as fingerprint for the methyl fragment. In the inner shell, however, the impact of the methyl can be localized and identified by chemical shift. A small, global, red shift is found for the O-K, N-K and sugar C-K spectra, whereas the base C-K spectrum exhibits apparent methyl-related changes.

Electron stimulated reactions of methyl iodide coadsorbed with amorphous solid water

International Nuclear Information System (INIS)

Perry, C. C.; Faradzhev, N. S.; Madey, T. E.; Fairbrother, D. H.

2007-01-01

The electron stimulated reactions of methyl iodide (MeI) adsorbed on and suspended within amorphous solid water (ice) were studied using a combination of postirradiation temperature programmed desorption and reflection absorption infrared spectroscopy. For MeI adsorbed on top of amorphous solid water (ice), electron beam irradiation is responsible for both structural and chemical transformations within the overlayer. Electron stimulated reactions of MeI result principally in the formation of methyl radicals and solvated iodide anions. The cross section for electron stimulated decomposition of MeI is comparable to the gas phase value and is only weakly dependent upon the local environment. For both adsorbed MeI and suspended MeI, reactions of methyl radicals within MeI clusters lead to the formation of ethane, ethyl iodide, and diiodomethane. In contrast, reactions between the products of methyl iodide and water dissociation are responsible for the formation of methanol and carbon dioxide. Methane, formed as a result of reactions between methyl radicals and either parent MeI molecules or hydrogen atoms, is also observed. The product distribution is found to depend on the film's initial chemical composition as well as the electron fluence. Results from this study highlight the similarities in the carbon-containing products formed when monohalomethanes coadsorbed with amorphous solid water are irradiated by either electrons or photons

A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray

Directory of Open Access Journals (Sweden)

Qiao Yingjuan

2008-01-01

Full Text Available Abstract Background DNA methylation based techniques are important tools in both clinical diagnostics and therapeutics. But most of these methods only analyze a few CpG sites in a target region. Indeed, difference of site-specific methylation may also lead to a change of methylation density in many cases, and it has been found that the density of methylation is more important than methylation of single CpG site for gene silencing. Results We have developed a novel approach for quantitative analysis of CpG methylation density on the basis of microarray-based hybridization and incorporation of Cy5-dCTP into the Cy3 labeled target DNA by using Taq DNA Polymerase on microarray. The quantification is achieved by measuring Cy5/Cy3 signal ratio which is proportional to methylation density. This methylation-sensitive technique, termed RMEAM (regional methylation elongation assay on microarray, provides several advantages over existing methods used for methylation analysis. It can determine an exact methylation density of the given region, and has potential of high throughput. We demonstrate a use of this method in determining the methylation density of the promoter region of the tumor-related gene MLH1, TERT and MGMT in colorectal carcinoma patients. Conclusion This technique allows for quantitative analysis of regional methylation density, which is the representative of all allelic methylation patterns in the sample. The results show that this technique has the characteristics of simplicity, rapidness, specificity and high-throughput.

Trans-methylation reactions in plants: focus on the activated methyl cycle.

Science.gov (United States)

Rahikainen, Moona; Alegre, Sara; Trotta, Andrea; Pascual, Jesús; Kangasjärvi, Saijaliisa

2018-02-01

Trans-methylation reactions are vital in basic metabolism, epigenetic regulation, RNA metabolism, and posttranslational control of protein function and therefore fundamental in determining the physiological processes in all living organisms. The plant kingdom is additionally characterized by the production of secondary metabolites that undergo specific hydroxylation, oxidation and methylation reactions to obtain a wide array of different chemical structures. Increasing research efforts have started to reveal the enzymatic pathways underlying the biosynthesis of complex metabolites in plants. Further engineering of these enzymatic machineries offers significant possibilities in the development of bio-based technologies, but necessitates deep understanding of their potential metabolic and regulatory interactions. Trans-methylation reactions are tightly coupled with the so-called activated methyl cycle (AMC), an essential metabolic circuit that maintains the trans-methylation capacity in all living cells. Tight regulation of the AMC is crucial in ensuring accurate trans-methylation reactions in different subcellular compartments, cell types, developmental stages and environmental conditions. This review addresses the organization and posttranslational regulation of the AMC and elaborates its critical role in determining metabolic regulation through modulation of methyl utilization in stress-exposed plants. © 2017 Scandinavian Plant Physiology Society.

Feasibility study of molecular memory device based on DNA using methylation to store information

Energy Technology Data Exchange (ETDEWEB)

Jiang, Liming; Al-Dirini, Feras [Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville 3010 (Australia); Center for Neural Engineering (CfNE), The University of Melbourne, Carlton 3053 (Australia); National ICT Australia, The University of Melbourne, Parkville 3010 (Australia); Qiu, Wanzhi; Skafidas, Efstratios, E-mail: sskaf@unimelb.edu.au [Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville 3010 (Australia); Center for Neural Engineering (CfNE), The University of Melbourne, Carlton 3053 (Australia); Hossain, Faruque M. [Center for Neural Engineering (CfNE), The University of Melbourne, Carlton 3053 (Australia); Evans, Robin [Department of Electrical and Electronic Engineering, The University of Melbourne, Parkville 3010 (Australia)

2016-07-14

DNA, because of its robustness and dense information storage capability, has been proposed as a potential candidate for next-generation storage media. However, encoding information into the DNA sequence requires molecular synthesis technology, which to date is costly and prone to synthesis errors. Reading the DNA strand information is also complex. Ideally, DNA storage will provide methods for modifying stored information. Here, we conduct a feasibility study investigating the use of the DNA 5-methylcytosine (5mC) methylation state as a molecular memory to store information. We propose a new 1-bit memory device and study, based on the density functional theory and non-equilibrium Green's function method, the feasibility of electrically reading the information. Our results show that changes to methylation states lead to changes in the peak of negative differential resistance which can be used to interrogate memory state. Our work demonstrates a new memory concept based on methylation state which can be beneficial in the design of next generation DNA based molecular electronic memory devices.

Feasibility study of molecular memory device based on DNA using methylation to store information

International Nuclear Information System (INIS)

Jiang, Liming; Al-Dirini, Feras; Qiu, Wanzhi; Skafidas, Efstratios; Hossain, Faruque M.; Evans, Robin

2016-01-01

DNA, because of its robustness and dense information storage capability, has been proposed as a potential candidate for next-generation storage media. However, encoding information into the DNA sequence requires molecular synthesis technology, which to date is costly and prone to synthesis errors. Reading the DNA strand information is also complex. Ideally, DNA storage will provide methods for modifying stored information. Here, we conduct a feasibility study investigating the use of the DNA 5-methylcytosine (5mC) methylation state as a molecular memory to store information. We propose a new 1-bit memory device and study, based on the density functional theory and non-equilibrium Green's function method, the feasibility of electrically reading the information. Our results show that changes to methylation states lead to changes in the peak of negative differential resistance which can be used to interrogate memory state. Our work demonstrates a new memory concept based on methylation state which can be beneficial in the design of next generation DNA based molecular electronic memory devices.

On-line monitoring of methanol and methyl formate in the exhaust gas of an industrial formaldehyde production plant by a mid-IR gas sensor based on tunable Fabry-Pérot filter technology.

Science.gov (United States)

Genner, Andreas; Gasser, Christoph; Moser, Harald; Ofner, Johannes; Schreiber, Josef; Lendl, Bernhard

2017-01-01

On-line monitoring of key chemicals in an industrial production plant ensures economic operation, guarantees the desired product quality, and provides additional in-depth information on the involved chemical processes. For that purpose, rapid, rugged, and flexible measurement systems at reasonable cost are required. Here, we present the application of a flexible mid-IR filtometer for industrial gas sensing. The developed prototype consists of a modulated thermal infrared source, a temperature-controlled gas cell for absorption measurement and an integrated device consisting of a Fabry-Pérot interferometer and a pyroelectric mid-IR detector. The prototype was calibrated in the research laboratory at TU Wien for measuring methanol and methyl formate in the concentration ranges from 660 to 4390 and 747 to 4610 ppmV. Subsequently, the prototype was transferred and installed at the project partner Metadynea Austria GmbH and linked to their Process Control System via a dedicated micro-controller and used for on-line monitoring of the process off-gas. Up to five process streams were sequentially monitored in a fully automated manner. The obtained readings for methanol and methyl formate concentrations provided useful information on the efficiency and correct functioning of the process plant. Of special interest for industry is the now added capability to monitor the start-up phase and process irregularities with high time resolution (5 s).

Changepoint detection in base-resolution methylome data reveals a robust signature of methylated domain landscape.

Science.gov (United States)

Yokoyama, Takao; Miura, Fumihito; Araki, Hiromitsu; Okamura, Kohji; Ito, Takashi

2015-08-12

Base-resolution methylome data generated by whole-genome bisulfite sequencing (WGBS) is often used to segment the genome into domains with distinct methylation levels. However, most segmentation methods include many parameters to be carefully tuned and/or fail to exploit the unsurpassed resolution of the data. Furthermore, there is no simple method that displays the composition of the domains to grasp global trends in each methylome. We propose to use changepoint detection for domain demarcation based on base-resolution methylome data. While the proposed method segments the methylome in a largely comparable manner to conventional approaches, it has only a single parameter to be tuned. Furthermore, it fully exploits the base-resolution of the data to enable simultaneous detection of methylation changes in even contrasting size ranges, such as focal hypermethylation and global hypomethylation in cancer methylomes. We also propose a simple plot termed methylated domain landscape (MDL) that globally displays the size, the methylation level and the number of the domains thus defined, thereby enabling one to intuitively grasp trends in each methylome. Since the pattern of MDL often reflects cell lineages and is largely unaffected by data size, it can serve as a novel signature of methylome. Changepoint detection in base-resolution methylome data followed by MDL plotting provides a novel method for methylome characterization and will facilitate global comparison among various WGBS data differing in size and even species origin.

Isolation and Characterization of Methyl Parathion-degrading Bacteria Based on Microbial Sensor Construction

Directory of Open Access Journals (Sweden)

GENG Fang-fang

2014-12-01

Full Text Available Methyl parathion (MP, a kind of typical organophosphates pesticides (OPs, is widely used as agricultural insecticides. However, due to their neurotoxic effects on humans, the elimination of OPs has become increasingly important. Microbial sensors are consisted of biological components and transducers. Owing to their attractive advantages including low cost, easy of miniaturization and excellent selectivity, they have been widely used for environmental analysis. In this paper, four novel bacterial strains capable of utilizing methyl parathion as the sole carbon source were isolated from pesticide contaminated soils. These four isolates were identified based on morphological characteristics and 16S rRNA gene sequences analysis, and their capability of degrading methyl parathion were investigated by high performance liquid chromatography. The highest degrading efficiency strain was selected for further study of degrading mechanism. The results indicated that degradation rate of these four strains were all over 78% after incubation at 30 ℃, pH 7.0 for 7 d with the original concentration of methyl parathion 50 mg·L-1. The highest degradation rate was up to 100%. 16S rRNA gene sequences indicated that strain MP-6 was affiliated into the genus klebsiella. The LC-MS results indicated that methyl parathion was hydrolyzed to dimethyl thiophosphoric acid and p-nitrophenol by MP-6. A little of p-nitrophenol molecules could be further metabolized to 4-nitrocatechol and 1, 2, 4-benzenetrio. The results indicated that based on detecting the potential signal of intermediate product p-nitrophenol, the strain MP-6 could be used to construct microbial sensors for determination of organophosphorus pesticides in environment.

One-Pot Hybrid SnO2 /Poly(methyl methacrylate) Nanocomposite Formation through Pulsed Laser Irradiation.

Science.gov (United States)

Caputo, Gianvito; Scarpellini, Alice; Palazon, Francisco; Athanassiou, Athanassia; Fragouli, Despina

2017-06-20

The localized in situ formation of tin dioxide (SnO 2 ) nanoparticles embedded in poly(methyl methacrylate) (PMMA) films is presented. This is achieved by the photoinduced conversion of the tin acetate precursor included in polymeric films, through controlled UV or visible pulsed laser irradiation at λ=355 and 532 nm, respectively. The evolution of the formation of nanoparticles is followed by UV/Vis spectroscopy and shows that their growth is affected in different ways by the laser pulses at the two applied wavelengths. This, in combination with electron microscopy analysis, reveals that, depending on the irradiation wavelength, the size of the nanoparticles in the final nanocomposites differs. This difference is attributed to distinct mechanistic pathways that lead to the synthesis of small nanoparticles (from 1.5 to 4.5 nm) at λ=355 nm, whereas bigger ones (from 5 to 16 nm) are formed at λ=532 nm. At the same time, structural studies with both X-ray and electron diffraction measurements demonstrate the crystallinity of SnO 2 nanoparticles in both cases, whereas XPS analysis confirms the light-induced oxidation of tin acetate into SnO 2 . Taken all together, it is demonstrated that the pulsed laser irradiation at λ=355 and 532 nm leads to the formation of SnO 2 nanoparticles with defined features highly dispersed in PMMA solid matrices. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Formation of molecular complexes of salicylic acid, acetylsalicylic acid, and methyl salicylate in a mixture of supercritical carbon dioxide with a polar cosolvent

Science.gov (United States)

Petrenko, V. E.; Antipova, M. L.; Gurina, D. L.; Odintsova, E. G.

2015-08-01

The solvate structures formed by salicylic acid, acetylsalicylic acid, and methyl salicylate in supercritical (SC) carbon dioxide with a polar cosolvent (methanol, 0.03 mole fractions) at a density of 0.7 g/cm3 and a temperature of 318 K were studied by the molecular dynamics method. Salicylic and acetylsalicylic acids were found to form highly stable hydrogen-bonded complexes with methanol via the hydrogen atom of the carboxyl group. For methyl salicylate in which the carboxyl hydrogen is substituted by a methyl radical, the formation of stable hydrogen bonds with methanol was not revealed. The contribution of other functional groups of the solute to the interactions with the cosolvent was much smaller. An analysis of correlations between the obtained data and the literature data on the cosolvent effect on the solubility of the compounds in SC CO2 showed that the dissolving ability of SC CO2 with respect to a polar organic substance in the presence of a cosolvent increased only when stable hydrogen-bonded complexes are formed between this substance and the cosolvent.

FEASTING BLACK HOLE BLOWS BUBBLES

Science.gov (United States)

2002-01-01

A monstrous black hole's rude table manners include blowing huge bubbles of hot gas into space. At least, that's the gustatory practice followed by the supermassive black hole residing in the hub of the nearby galaxy NGC 4438. Known as a peculiar galaxy because of its unusual shape, NGC 4438 is in the Virgo Cluster, 50 million light-years from Earth. These NASA Hubble Space Telescope images of the galaxy's central region clearly show one of the bubbles rising from a dark band of dust. The other bubble, emanating from below the dust band, is barely visible, appearing as dim red blobs in the close-up picture of the galaxy's hub (the colorful picture at right). The background image represents a wider view of the galaxy, with the central region defined by the white box. These extremely hot bubbles are caused by the black hole's voracious eating habits. The eating machine is engorging itself with a banquet of material swirling around it in an accretion disk (the white region below the bright bubble). Some of this material is spewed from the disk in opposite directions. Acting like high-powered garden hoses, these twin jets of matter sweep out material in their paths. The jets eventually slam into a wall of dense, slow-moving gas, which is traveling at less than 223,000 mph (360,000 kph). The collision produces the glowing material. The bubbles will continue to expand and will eventually dissipate. Compared with the life of the galaxy, this bubble-blowing phase is a short-lived event. The bubble is much brighter on one side of the galaxy's center because the jet smashed into a denser amount of gas. The brighter bubble is 800 light-years tall and 800 light-years across. The observations are being presented June 5 at the American Astronomical Society meeting in Rochester, N.Y. Both pictures were taken March 24, 1999 with the Wide Field and Planetary Camera 2. False colors were used to enhance the details of the bubbles. The red regions in the picture denote the hot gas

Effect of air-blowing duration on the bond strength of current one-step adhesives to dentin.

Science.gov (United States)

Fu, Jiale; Saikaew, Pipop; Kawano, Shimpei; Carvalho, Ricardo M; Hannig, Matthias; Sano, Hidehiko; Selimovic, Denis

2017-08-01

To evaluate the influence of different air-blowing durations on the micro-tensile bond strength (μTBS) of five current one-step adhesive systems to dentin. One hundred and five caries-free human molars and five current one-step adhesive systems were used: ABU (All Bond Universal, Bisco, Inc.), CUB (CLEARFIL™ Universal Bond, Kuraray), GPB (G-Premio BOND, GC), OBA (OptiBond All-in-one, Kerr) and SBU (Scotchbond Universal, 3M ESPE). The adhesives were applied to 600 SiC paper-flat dentin surfaces according to each manufacturer's instructions and were air-dried with standard, oil-free air pressure of 0.25MPa for either 0s, 5s, 15s or 30s before light-curing. Bond strength to dentin was determined by using μTBS test after 24h of water storage. The fracture pattern on the dentin surface was analyzed by SEM. The resin-dentin interface of untested specimens was visualized by panoramic SEM image. Data from μTBS were analyzed using two-way ANOVA (adhesive vs. air-blowing time), and Games-Howell (a=0.05). Two-way ANOVA revealed a significant effect of materials (p=0.000) and air-blowing time (p=0.000) on bond strength to dentin. The interaction between factors was also significantly different (p=0.000). Maximum bond strength for each system were recorded, OBA/15s (76.34±19.15MPa), SBU/15s (75.18±12.83MPa), CUB/15s (68.23±16.36MPa), GPB/30s (55.82±12.99MPa) and ABU/15s (44.75±8.95MPa). The maximum bond strength of OBA and SUB were significantly higher than that of GPB and ABU (padhesive systems is material-dependent (p=0.000), and was influenced by air-blowing duration (p=0.000). For the current one-step adhesive systems, higher bond strengths could be achieved with prolonged air-blowing duration between 15-30s. Copyright © 2017 The Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

Dissociation dynamics of methylal

Energy Technology Data Exchange (ETDEWEB)

Beaud, P; Frey, H -M; Gerber, T; Mischler, B; Radi, P P; Tzannis, A -P [Paul Scherrer Inst. (PSI), Villigen (Switzerland)

1999-08-01

The dissociation of methylal is investigated using mass spectrometry, combined with a pyrolytic radical source and femtosecond pump probe experiments. Based on preliminary results two reaction paths of methylal dissociation are proposed and discussed. (author) 4 fig., 3 refs.

Novel Method of Weighting Cumulative Helmet Impacts Improves Correlation with Brain White Matter Changes After One Football Season of Sub-concussive Head Blows.

Science.gov (United States)

Merchant-Borna, Kian; Asselin, Patrick; Narayan, Darren; Abar, Beau; Jones, Courtney M C; Bazarian, Jeffrey J

2016-12-01

One football season of sub-concussive head blows has been shown to be associated with subclinical white matter (WM) changes on diffusion tensor imaging (DTI). Prior research analyses of helmet-based impact metrics using mean and peak linear and rotational acceleration showed relatively weak correlations to these WM changes; however, these analyses failed to account for the emerging concept that neuronal vulnerability to successive hits is inversely related to the time between hits (TBH). To develop a novel method for quantifying the cumulative effects of sub-concussive head blows during a single season of collegiate football by weighting helmet-based impact measures for time between helmet impacts. We further aim to compare correlations to changes in DTI after one season of collegiate football using weighted cumulative helmet-based impact measures to correlations using non-weighted cumulative helmet-based impact measures and non-cumulative measures. We performed a secondary analysis of DTI and helmet impact data collected on ten Division III collegiate football players during the 2011 season. All subjects underwent diffusion MR imaging before the start of the football season and within 1 week of the end of the football season. Helmet impacts were recorded at each practice and game using helmet-mounted accelerometers, which computed five helmet-based impact measures for each hit: linear acceleration (LA), rotational acceleration (RA), Gadd Severity Index (GSI), Head Injury Criterion (HIC 15 ), and Head Impact Technology severity profile (HITsp). All helmet-based impact measures were analyzed using five methods of summary: peak and mean (non-cumulative measures), season sum-totals (cumulative unweighted measures), and season sum-totals weighted for time between hits (TBH), the interval of time from hit to post-season DTI assessment (TUA), and both TBH and TUA combined. Summarized helmet-based impact measures were correlated to statistically significant changes in

Effects of environmental temperature on oviposition behavior in three blow fly species of forensic importance.

Science.gov (United States)

Ody, Helen; Bulling, Mark T; Barnes, Kate M

2017-06-01

A number of factors are known to affect blow fly behavior with respect to oviposition. Current research indicates that temperature is the most significant factor. However temperature thresholds for oviposition in forensically important blow flies have not been well studied. Here, the oviposition behavior of three species of forensically important blow fly species (Calliphora vicina, Calliphora vomitoria and Lucilia sericata,) was studied under controlled laboratory conditions over a range of temperatures (10-40°C). Lower temperature thresholds for oviposition of 16°C and 17.5°C were established for C. vomitoria and L. sericata respectively, whilst C. vicina continued to lay eggs at 10°C. C. vomitoria and L. sericata both continued to lay eggs at 40°C, whilst the highest temperature at which oviposition occurred in C. vicina was 35°C. Within these thresholds there was considerable variation in the number of surviving pupae, with a general pattern of a single peak within the range of temperatures at which eggs were laid, but with the pattern being much less distinct for L. sericata. Copyright © 2017 Elsevier B.V. All rights reserved.

The Role of DNA Methylation in Xylogenesis in Different Tissues of Poplar

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Qingshi Wang

2016-07-01

Full Text Available In trees, xylem tissues play a key role in the formation of woody tissues, which have important uses for pulp and timber production; also DNA methylation plays an important part in gene regulation during xylogenesis in trees. In our study, methylation-sensitive amplified polymorphism (MSAP analysis was used to analyze the role cytosine methylation plays in wood formation in the commercially important tree species Populus tomentosa. This analysis compared the methylation patterns between xylem tissues (developing xylem and mature xylem and non-xylem tissues (cambium, shoot apex, young leaf, mature leaf, phloem, root, male catkin, and female catkin and found 10,316 polymorphic methylation sites. MSAP identified 132 candidate genes with the same methylation patterns in xylem tissues, including seven wood-related genes. The expression of these genes differed significantly between xylem and non-xylem tissue types (P<0.01. This indicated that the difference of expression of specific genes with unique methylation patterns, rather than relative methylation levels between the two tissue types plays a critical role in wood biosynthesis. However, 46.2% of candidate genes with the same methylation pattern in vascular tissues (cambium, phloem, and developing xylem did not have distinct expression patterns in xylem and non-xylem tissue. Also, bisulfite sequencing and transcriptome sequencing of MYB, NAC and FASCICLIN-LIKE AGP 13 revealed that the location of cytosine methylation in the gene might affect the expression of different transcripts from the corresponding gene. The expression of different transcripts that produce distinct proteins from a single gene might play an important role in the regulation of xylogenesis.

Blow.MOD2: a program for blowdown transient calculations

International Nuclear Information System (INIS)

Doval, A.

1990-01-01

The BLOW.MOD2 program has been developed to calculate the blowdown phase in a pressurized vessel after a break/valve is opened. It is a one volume model where break height and flow area are specified. Moody critical flow model was adopted under saturation conditions for flow calculation through the break. Heat transfer from structures and internals have been taken into account. Long term depressurization results and a more complex model are compared satisfactorily. (Author)

Analysis of DNA methylation of maize in response to osmotic and salt stress based on methylation-sensitive amplified polymorphism.

Science.gov (United States)

Tan, Ming-pu

2010-01-01

Water stress is known to alter cytosine methylation, which generally represses transcription. However, little is known about the role of methylation alteration in maize under osmotic stress. Here, methylation-sensitive amplified polymorphism (MSAP) was used to screen PEG- or NaCl-induced methylation alteration in maize seedlings. The sequences of 25 differentially amplified fragments relevant to stress were successfully obtained. Two stress-specific fragments from leaves, LP166 and LPS911, shown to be homologous to retrotransposon Gag-Pol protein genes, suggested that osmotic stress-induced methylation of retrotransposons. Three MSAP fragments, representing drought-induced or salt-induced methylation in leaves, were homologous to a maize aluminum-induced transporter. Besides these, heat shock protein HSP82, Poly [ADP-ribose] polymerase 2, Lipoxygenase, casein kinase (CK2), and dehydration-responsive element-binding (DREB) factor were also homologs of MSAP sequences from salt-treated roots. One MSAP fragment amplified from salt-treated roots, designated RS39, was homologous to the first intron of maize protein phosphatase 2C (zmPP2C), whereas - LS103, absent from salt-treated leaves, was homologous to maize glutathione S-transferases (zmGST). Expression analysis showed that salt-induced intron methylation of root zmPP2C significantly downregulated its expression, while salt-induced demethylation of leaf zmGST weakly upregulated its expression. The results suggested that salinity-induced methylation downregulated zmPP2C expression, a negative regulator of the stress response, while salinity-induced demethylation upregulated zmGST expression, a positive effecter of the stress response. Altered methylation, in response to stress, might also be involved in stress acclimation. Copyright 2009 Elsevier Masson SAS. All rights reserved.

THERMODYNAMICS OF MICELLE FORMATION BY 1-METHYL-4-ALKYLPYRIDINIUM HALIDES

NARCIS (Netherlands)

BIJMA, K; ENGBERTS, JBFN; HAANDRIKMAN, G; VANOS, NM; BLANDAMER, MJ; BUTT, MD; CULLIS, PM

This paper reports enthalpies of micellization for a series of 1-methyl-4-alkylpyridinium halide surfactants at 303.2 K with different lengths and degrees of branching of the 4-alkyl chain and different sizes of counterions using two microcalorimeters (LKB 2277 and Omega Microcal). The standard

Blow-up in multidimensional aggregation equations with mildly singular interaction kernels

International Nuclear Information System (INIS)

Bertozzi, Andrea L; Laurent, Thomas; Carrillo, José A

2009-01-01

We consider the multidimensional aggregation equation u t − ∇· (u∇K * u) = 0 in which the radially symmetric attractive interaction kernel has a mild singularity at the origin (Lipschitz or better). In the case of bounded initial data, finite time singularity has been proved for kernels with a Lipschitz point at the origin (Bertozzi and Laurent 2007 Commun. Math. Sci. 274 717–35), whereas for C 2 kernels there is no finite-time blow-up. We prove, under mild monotonicity assumptions on the kernel K, that the Osgood condition for well-posedness of the ODE characteristics determines global in time well-posedness of the PDE with compactly supported bounded nonnegative initial data. When the Osgood condition is violated, we present a new proof of finite time blow-up that extends previous results, requiring radially symmetric data, to general bounded, compactly supported nonnegative initial data without symmetry. We also present a new analysis of radially symmetric solutions under less strict monotonicity conditions. Finally, we conclude with a discussion of similarity solutions for the case K(x) = |x| and some open problems

Direct observation of supported W bis-methylidene from supported W-methyl/methylidyne species

KAUST Repository

Callens, Emmanuel; Abou-Hamad, Edy; Riache, Nassima; Basset, Jean-Marie

2014-01-01

Extensive solid-state NMR analyses unambiguously determine the formation of silica supported W bis-methylidene methyl species by reaction of the corresponding methyl carbyne with trimethylphosphine or a cyclic olefin. © 2014 the Partner Organisations.

2′-O Methylation of Internal Adenosine by Flavivirus NS5 Methyltransferase

Science.gov (United States)

Dong, Hongping; Chang, David C.; Hua, Maggie Ho Chia; Lim, Siew Pheng; Chionh, Yok Hian; Hia, Fabian; Lee, Yie Hou; Kukkaro, Petra; Lok, Shee-Mei; Dedon, Peter C.; Shi, Pei-Yong

2012-01-01

RNA modification plays an important role in modulating host-pathogen interaction. Flavivirus NS5 protein encodes N-7 and 2′-O methyltransferase activities that are required for the formation of 5′ type I cap (m7GpppAm) of viral RNA genome. Here we reported, for the first time, that flavivirus NS5 has a novel internal RNA methylation activity. Recombinant NS5 proteins of West Nile virus and Dengue virus (serotype 4; DENV-4) specifically methylates polyA, but not polyG, polyC, or polyU, indicating that the methylation occurs at adenosine residue. RNAs with internal adenosines substituted with 2′-O-methyladenosines are not active substrates for internal methylation, whereas RNAs with adenosines substituted with N6-methyladenosines can be efficiently methylated, suggesting that the internal methylation occurs at the 2′-OH position of adenosine. Mass spectroscopic analysis further demonstrated that the internal methylation product is 2′-O-methyladenosine. Importantly, genomic RNA purified from DENV virion contains 2′-O-methyladenosine. The 2′-O methylation of internal adenosine does not require specific RNA sequence since recombinant methyltransferase of DENV-4 can efficiently methylate RNAs spanning different regions of viral genome, host ribosomal RNAs, and polyA. Structure-based mutagenesis results indicate that K61-D146-K181-E217 tetrad of DENV-4 methyltransferase forms the active site of internal methylation activity; in addition, distinct residues within the methyl donor (S-adenosyl-L-methionine) pocket, GTP pocket, and RNA-binding site are critical for the internal methylation activity. Functional analysis using flavivirus replicon and genome-length RNAs showed that internal methylation attenuated viral RNA translation and replication. Polymerase assay revealed that internal 2′-O-methyladenosine reduces the efficiency of RNA elongation. Collectively, our results demonstrate that flavivirus NS5 performs 2′-O methylation of internal adenosine of

Genetic diversity analysis of Jatropha curcas L. (Euphorbiaceae) based on methylation-sensitive amplification polymorphism.

Science.gov (United States)

Kanchanaketu, T; Sangduen, N; Toojinda, T; Hongtrakul, V

2012-04-13

Genetic analysis of 56 samples of Jatropha curcas L. collected from Thailand and other countries was performed using the methylation-sensitive amplification polymorphism (MSAP) technique. Nine primer combinations were used to generate MSAP fingerprints. When the data were interpreted as amplified fragment length polymorphism (AFLP) markers, 471 markers were scored. All 56 samples were classified into three major groups: γ-irradiated, non-toxic and toxic accessions. Genetic similarity among the samples was extremely high, ranging from 0.95 to 1.00, which indicated very low genetic diversity in this species. The MSAP fingerprint was further analyzed for DNA methylation polymorphisms. The results revealed differences in the DNA methylation level among the samples. However, the samples collected from saline areas and some species hybrids showed specific DNA methylation patterns. AFLP data were used, together with methylation-sensitive AFLP (MS-AFLP) data, to construct a phylogenetic tree, resulting in higher efficiency to distinguish the samples. This combined analysis separated samples previously grouped in the AFLP analysis. This analysis also distinguished some hybrids. Principal component analysis was also performed; the results confirmed the separation in the phylogenetic tree. Some polymorphic bands, involving both nucleotide and DNA methylation polymorphism, that differed between toxic and non-toxic samples were identified, cloned and sequenced. BLAST analysis of these fragments revealed differences in DNA methylation in some known genes and nucleotide polymorphism in chloroplast DNA. We conclude that MSAP is a powerful technique for the study of genetic diversity for organisms that have a narrow genetic base.

FORMATE-BASED FLUIDS: FORMULATION AND APPLICATION

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Nediljka Gaurina-Međimurec

2008-12-01

Full Text Available Formate-based fluids has been successfully used in over hunders HPHT well operations since they introduced in field practice. They have many advantages when compared with conventional HPHT drilling and completion fluids such as: minimal formation damage, maintenance of additve properties at high temperatures, reduced hydraulic flow resistance, low potential for differential sticking, naturally lubricating, very low corrosion rates, biodegradable and pose little risk to the environment etc. Formate-based fluids can be applied during deep slim hole drilling, shale drilling, reservoir drilling, salt and gas hydrate formations drilling. The laboratory research was carried out to evaluate the rheological behavior of formate-based fluids as a function of temperature. Formate-based fluids were formulated using potassium formate brine, xanthan polymer, PAC, starch and calcium carbonate. Experimental results show that potassium formate improves the thermal stability of polymers.

Low-Speed Wind-Tunnel Investigation of Blowing Boundary-Layer Control on Leading- and Trailing-Edge Flaps of a Large-Scale, Low-Aspect-Ratio, 45 Swept-wing Airplane Configuration

Science.gov (United States)

Maki, Ralph L.

1959-01-01

Blowing boundary-layer control was applied to the leading- and trailing-edge flaps of a 45 deg sweptback-wing complete model in a full-scale low-speed wind-tunnel study. The principal purpose of the study was to determine the effects of leading-edge flap deflection and boundary-layer control on maximum lift and longitudinal stability. Leading-edge flap deflection alone was sufficient to maintain static longitudinal stability without trailing-edge flaps. However, leading-edge flap blowing was required to maintain longitudinal stability by delaying leading-edge flow separation when trailing-edge flaps were deflected either with or without blowing. Partial-span leading-edge flaps deflected 60 deg with moderate blowing gave the major increase in maximum lift, although higher deflection and additional blowing gave some further increase. Inboard of 0.4 semispan leading-edge flap deflection could be reduced to 40 deg and/or blowing could be omitted with only small loss in maximum lift. Trailing-edge flap lift increments were increased by boundary-layer control for deflections greater than 45 deg. Maximum lift was not increased with deflected trailing-edge flaps with blowing.

Modulation of the degree and pattern of methyl-esterification of pectic homogalacturonan in plant cell walls. Implications for pectin methyl esterase action, matrix properties, and cell adhesion.

Science.gov (United States)

Willats, W G; Orfila, C; Limberg, G; Buchholt, H C; van Alebeek, G J; Voragen, A G; Marcus, S E; Christensen, T M; Mikkelsen, J D; Murray, B S; Knox, J P

2001-06-01

Homogalacturonan (HG) is a multifunctional pectic polysaccharide of the primary cell wall matrix of all land plants. HG is thought to be deposited in cell walls in a highly methyl-esterified form but can be subsequently de-esterified by wall-based pectin methyl esterases (PMEs) that have the capacity to remove methyl ester groups from HG. Plant PMEs typically occur in multigene families/isoforms, but the precise details of the functions of PMEs are far from clear. Most are thought to act in a processive or blockwise fashion resulting in domains of contiguous de-esterified galacturonic acid residues. Such de-esterified blocks of HG can be cross-linked by calcium resulting in gel formation and can contribute to intercellular adhesion. We demonstrate that, in addition to blockwise de-esterification, HG with a non-blockwise distribution of methyl esters is also an abundant feature of HG in primary plant cell walls. A partially methyl-esterified epitope of HG that is generated in greatest abundance by non-blockwise de-esterification is spatially regulated within the cell wall matrix and occurs at points of cell separation at intercellular spaces in parenchymatous tissues of pea and other angiosperms. Analysis of the properties of calcium-mediated gels formed from pectins containing HG domains with differing degrees and patterns of methyl-esterification indicated that HG with a non-blockwise pattern of methyl ester group distribution is likely to contribute distinct mechanical and porosity properties to the cell wall matrix. These findings have important implications for our understanding of both the action of pectin methyl esterases on matrix properties and mechanisms of intercellular adhesion and its loss in plants.

A Cross-Wavelet Transform Aided Rule Based Approach for Early Prediction of Lean Blow-out in Swirl-Stabilized Dump Combustor

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Debangshu Dey

2015-03-01

Full Text Available Lean or ultralean combustion is one of the popular strategies to achieve very low emission levels. However, it is extremely susceptible to lean blow-out (LBO. The present work explores a Cross-wavelet transform (XWT aided rule based scheme for early prediction of lean blowout. XWT can be considered as an advancement of wavelet analysis which gives correlation between two waveforms in time-frequency space. In the present scheme a swirl-stabilized dump combustor is used as a laboratory-scale model of a generic gas turbine combustor with LPG as fuel. Various time series data of CH chemiluminescence signal are recorded for different flame conditions by varying equivalence ratio, flow rate and level of air-fuel premixing. Some features are extracted from the cross-wavelet spectrum of the recorded waveforms and a reference wave. The extracted features are observed to classify the flame condition into three major classes: near LBO, moderate and healthy. Moreover, a Rough Set based technique is also applied on the extracted features to generate a rule base so that it can be fed to a real time controller or expert system to take necessary control action to prevent LBO. Results show that the proposed methodology performs with an acceptable degree of accuracy.

Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.).

Science.gov (United States)

Keyte, Anna L; Percifield, Ryan; Liu, Bao; Wendel, Jonathan F

2006-01-01

Cytosine methylation is important in the epigenetic regulation of gene expression and development in plants and has been implicated in silencing duplicate genes after polyploid formation in several plant groups. Relatively little information exists, however, on levels and patterns of methylation polymorphism (MP) at homologous loci within species. Here we explored the levels and patterns of methylation-polymorphism diversity at CCGG sites within allotetraploid cotton, Gossypium hirsutum, using a methylation-sensitive amplified fragment length polymorphism screen and a selected set of 20 G. hirsutum accessions for which we have information on genetic polymorphism levels and relationships. Methylation and MP exist at high levels within G. hirsutum: of 150 HpaII/MspI sites surveyed, 48 were methylated at the inner cytosine (32%) and 32 of these were polymorphic (67%). Both these values are higher than comparable measures of genetic diversity using restriction fragment length polymorphisms. The high percentage of methylation-polymorphic sites and potential relationship to gene expression underscore the potential significance of MP within and among populations. We speculate that biased correlation of methylation-polymorphic sites and genes in cotton may be a consequence of polyploidy and the attendant doubling of all genes.

Undergraduate Analytical Chemistry Experiment: The Determination of Formation Constants for Acetate and Mono-and Dichloroacetate Salts of Primary, Secondary, and Tertiary Methyl-and Ethylamines

Science.gov (United States)

D'Amelia, Ronald P.; Chiang, Stephanie; Pollut, Stephanie; Nirode, William F.

2014-01-01

The formation and the hydrolysis of organic salts produced by the titration of a 0.1 M solution of the following amines: methyl-, dimethyl-, trimethyl-, ethyl-, diethyl-, and triethylamine with a 0.1 M solution of acetic, chloroacetic, and dichloracetic acids are studied. The pK[subscript b] of the amine and the pH at the end point were determined…

The Formation of Polycomplexes of Poly(Methyl Vinyl Ether-Co-Maleic Anhydride and Bovine Serum Albumin in the Presence of Copper Ions

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Karahan Mesut

2014-09-01

Full Text Available The binary and ternary complex formations of poly(methyl vinyl ether-co-maleic anhydride (PMVEMA with copper ions and with bovine serum albumin (BSA in the presence of copper ions in phosphate buffer solution at pH = 7 were examined by the techniques of UV-visible, fluorescence, dynamic light scattering, atomic force microscopy measurements. In the formation of binary complexes of PMVEMA-Cu(II, the addition of copper ions to the solution of PMVEMA in phosphate buffer solution at pH = 7 forms homogeneous solutions when the molar ratio of Cu(II/MVEMA is 0.5. Then the formations of ternary complexes of PMVEMA-Cu(II-BSA were examined. Study analysis revealed that the toxicities of polymer-metal and polymer-metal-protein mixture solutions depend on the nature and ratio of components in mixtures.

PHYSIOLOGICALLY BASED PHARMACOKINETIC MODEL FOR HUMAN EXPOSURES TO METHYL TERTIARY-BUTYL ETHER

Science.gov (United States)

Humans can be exposed by inhalation, ingestion, or dermal absorption to methyl tertiary-butyl ether (MTBE), an oxygenated fuel additive, from contaminated water sources. The purpose of this research was to develop a physiologically based pharmacokinetic model describing in human...

What Actions Can Be Taken to Increase Whistle-Blowing in the Classroom?

Science.gov (United States)

Bernardi, Richard A.; Landry, Alexandra C.; Landry, Erynne E.; Buonafede, Mitchell R.; Berardi, Marissa E.

2016-01-01

This study surveyed undergraduate business students on various issues concerning the potential of students whistle-blowing when they observe other students cheating. Developing the courage of one's conviction in our accounting students is important to accounting educators as we are also emphasizing traits such as integrity, skepticism, and…

Thermal large Eddy simulations and experiments in the framework of non-isothermal blowing; Simulations des grandes echelles thermiques et experiences dans le cadre d'effusion anisotherme

Energy Technology Data Exchange (ETDEWEB)

Brillant, G

2004-06-15

The aim of this work is to study thermal large-eddy simulations and to determine the nonisothermal blowing impact on a turbulent boundary layer. An experimental study is also carried out in order to complete and validate simulation results. In a first time, we developed a turbulent inlet condition for the velocity and the temperature, which is necessary for the blowing simulations.We studied the asymptotic behavior of the velocity, the temperature and the thermal turbulent fluxes in a large-eddy simulation point of view. We then considered dynamics models for the eddy-diffusivity and we simulated a turbulent channel flow with imposed temperature, imposed flux and adiabatic walls. The numerical and experimental study of blowing permitted to obtain to the modifications of a thermal turbulent boundary layer with the blowing rate. We observed the consequences of the blowing on mean and rms profiles of velocity and temperature but also on velocity-velocity and velocity-temperature correlations. Moreover, we noticed an increase of the turbulent structures in the boundary layer with blowing. (author)

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

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Li Xin

2012-07-01

Full Text Available Abstract Background DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza sativa ssp. japonica, indica and their wild relatives, Oryza rufipogon and Oryza nivara. Results The overall methylation level of rice genomes is four times higher than that of Arabidopsis. Consistent with the results reported for Arabidopsis, methylation in promoters represses gene expression while gene-body methylation generally appears to be positively associated with gene expression. Interestingly, we discovered that methylation in gene transcriptional termination regions (TTRs can significantly repress gene expression, and the effect is even stronger than that of promoter methylation. Through integrated analysis of genomic, DNA methylomic and transcriptomic differences between cultivated and wild rice, we found that primary DNA sequence divergence is the major determinant of methylational differences at the whole genome level, but DNA methylational difference alone can only account for limited gene expression variation between the cultivated and wild rice. Furthermore, we identified a number of genes with significant difference in methylation level between the wild and cultivated rice. Conclusions The single-base resolution methylomes of rice obtained in this study have not only broadened our understanding of the mechanism and function of DNA methylation in plant genomes, but also provided valuable data for future studies of rice epigenetics and the epigenetic differentiation between wild and cultivated rice.

Whistle-blowing and workplace culture in older peoples' care: qualitative insights from the healthcare and social care workforce.

Science.gov (United States)

Jones, Aled; Kelly, Daniel

2014-09-01

Inquiries in the UK into mistreatment of older people by healthcare employees over the last 30 years have focused on introducing or supporting employee whistle-blowing. Although whistle-blowers have made an important contribution to patient safety it remains a controversial activity. The fate of whistle-blowers is bleak, often resulting in personal and professional sacrifices. Here we draw on the views of healthcare and social care employees working with older people to explore perceptions of whistle-blowing as well as alternative strategies that may be used to raise concerns about the mistreatment of patients by co-workers. Whistle-blowing was perceived as a negative term. Managers said they promoted open cultures underpinned by regular team meetings and an open-door ethos. Others described workplace norms that were somewhat at odds with these open culture ideals. Whistle-blowing was considered risky, and this led to staff creating informal channels through which to raise concerns. Those who witnessed wrongdoing were aware that support was available from external agencies but preferred local solutions and drew upon personal ethics rather than regulatory edicts to shape their responses. We argue that the importance of workplace relationships and informal channels for raising concerns should be better understood to help prevent the mistreatment of vulnerable groups. © 2014 The Authors. Sociology of Health & Illness © 2014 Foundation for the Sociology of Health & Illness/John Wiley & Sons Ltd.

Extraordinary blowing snow transport events in East Antarctica

Energy Technology Data Exchange (ETDEWEB)

Scarchilli, Claudio; Agnoletto, Lucia [ENEA, Rome (Italy); Universita di Siena, Dipartimento di Scienze della Terra, Siena (Italy); Frezzotti, Massimo; Grigioni, Paolo; Silvestri, Lorenzo de [ENEA, Rome (Italy); Dolci, Stefano [CNR, Rome (Italy); Consorzio P.N.R.A. S.C.r.l., Rome (Italy)

2010-06-15

In the convergence slope/coastal areas of Antarctica, a large fraction of snow is continuously eroded and exported by wind to the atmosphere and into the ocean. Snow transport observations from instruments and satellite images were acquired at the wind convergence zone of Terra Nova Bay (East Antarctica) throughout 2006 and 2007. Snow transport features are well-distinguished in satellite images and can extend vertically up to 200 m as first-order quantitatively estimated by driftometer sensor FlowCapt trademark. Maximum snow transportation occurs in the fall and winter seasons. Snow transportation (drift/blowing) was recorded for {proportional_to}80% of the time, and 20% of time recorded, the flux is >10{sup -2} kg m{sup -2} s{sup -1} with particle density increasing with height. Cumulative snow transportation is {proportional_to}4 orders of magnitude higher than snow precipitation at the site. An increase in wind speed and transportation ({proportional_to}30%) was observed in 2007, which is in agreement with a reduction in observed snow accumulation. Extensive presence of ablation surface (blue ice and wind crust) upwind and downwind of the measurement site suggest that the combine processes of blowing snow sublimation and snow transport remove up to 50% of the precipitation in the coastal and slope convergence area. These phenomena represent a major negative effect on the snow accumulation, and they are not sufficiently taken into account in studies of surface mass balance. The observed wind-driven ablation explains the inconsistency between atmospheric model precipitation and measured snow accumulation value. (orig.)

Blowing off steam: Tuffisite formation as a regulator for lava dome eruptions

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Jackie Evan Kendrick

2016-04-01

Full Text Available Tuffisites are veins of variably sintered, pyroclastic particles that form in conduits and lava domes as a result of localized fragmentation events during gas-and-ash explosions. Those observed in-situ on the active 2012 lava dome of Volcán de Colima range from voids with intra-clasts showing little movement and interpreted to be failure-nuclei, to sub-parallel lenses of sintered granular aggregate interpreted as fragmentation horizons, through to infilled fractures with evidence of viscous remobilization. All tuffisites show evidence of sintering. Further examination of the complex fracture-and-channel patterns reveals viscous backfill by surrounding magma, suggesting that lava fragmentation was followed by stress relaxation and continued viscous deformation as the tuffisites formed. The natural tuffisites are more permeable than the host andesite, and have a wide range of porosity and permeability compared to a narrower window for the host rock, and gauging from their significant distribution across the dome, we posit that the tuffisite veins may act as important outgassing pathways. To investigate tuffisite formation we crushed and sieved andesite from the lava dome and sintered it at magmatic temperatures for different times. We then assessed the healing and sealing ability by measuring porosity and permeability, showing that sintering reduces both over time. During sintering the porosity-permeability reduction occurs due to the formation of viscous necks between adjacent grains, a process described by the neck-formation model of Frenkel (1945. This process leads the granular starting material to a porosity-permeability regime anticipated for effusive lavas, and which describes the natural host lava as well as the most impervious of natural tuffisites. This suggests that tuffisite formation at Volcán de Colima constructed a permeable network that enabled gas to bleed passively from the magma. We postulate that this progressively reduced

Protein methylation reactions in intact pea chloroplasts

International Nuclear Information System (INIS)

Niemi, K.J.

1989-01-01

Post-translational protein methylation was investigated in Pisum sativum chloroplasts. Intact pea chloroplasts were incubated with ( 3 H-methyl)-S-adenosylmethionine under various conditions. The chloroplasts were then separated into stromal and thylakoid fractions and analyzed for radioactivity transferred to protein. Light enhanced the magnitude of labeling in both fractions. One thylakoid polypeptide with an apparent molecular mass of 43 kDa was labeled only in the light. Several other thylakoid and stromal proteins were labeled in both light and dark-labeling conditions. Both base-labile methylation, carboxy-methylesters and base-stable groups, N-methylations were found. Further characterization of the methyl-transfer reactions will be presented

Thermal Decomposition of Potential Ester Biofuels. Part I: Methyl Acetate and Methyl Butanoate

Energy Technology Data Exchange (ETDEWEB)

Porterfield, Jessica P.; Bross, David H.; Ruscic, Branko; Thorpe, James H.; Nguyen, Thanh Lam; Baraban, Joshua H.; Stanton, John F.; Daily, John W.; Ellison, G. Barney

2017-06-09

Two methyl esters have been examined as models for the pyrolysis of biofuels. Dilute samples (0.06 - 0.13%) of methyl acetate (CH₃COOCH₃) and methyl butanoate (CH₃CH₂CH₂COOCH₃) were entrained in (He, Ar) carrier gas and decomposed in a set of flash-pyrolysis micro-reactors. The pyrolysis products resulting from the methyl esters were detected and identified by vacuum ultraviolet photoionization mass spectrometry. Complementary product identification was provided by matrix infrared absorption spectroscopy. Pyrolysis pressures in the pulsed micro-reactor were roughly 20 Torr and residence times through the reactors were approximately 25 - 150 µs. Reactor temperatures of 300 – 1600 K were explored. Decomposition of CH₃COOCH₃ commences at 1000 K and the initial products are (CH₂=C=O and CH₃OH). As the micro-reactor is heated to 1300 K, a mixture of (CH₂=C=O and CH₃OH, CH₃, CH₂=O, H, CO, CO₂) appears. The thermal cracking of CH₃CH₂CH₂COOCH₃ begins at 800 K with the formation of (CH₃CH₂CH=C=O, CH₃OH). By 1300 K, the pyrolysis of methyl butanoate yields a complex mixture of (CH₃CH₂CH=C=O, CH₃OH, CH₃, CH₂=O, CO, CO₂, CH₃CH=CH₂, CH₂CHCH₂, CH₂=C=CH₂, HCCCH₂, CH₂=C=C=O, CH₂=CH₂, HCΞCH, CH₂=C=O). Based on the results from the thermal cracking of methyl acetate and methyl butanoate, we predict several important decomposition channels for the pyrolysis of fatty acid methyl esters, R CH₂-COOCH₃. The lowest energy fragmentation will be a 4-center elimination of methanol to form the ketene, RCH=C=O. At higher temperatures, concerted

Determinants and impediments of whistle-blowing in local government councils: A case study of the South-East District Council, Botswana

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Abiodun M.T. Omotoye

2017-11-01

Full Text Available This article investigates the perceptions of public service employees regarding the role of whistle-blowing in local government. Whistle-blowing has received increased attention and support as a means of detecting and correcting wrongdoing in organisations. Yet, as this case study discusses, the absence of whistle-blower protection measures and fear of reprisal and job loss deter potential witnesses from reporting wrongdoing in the workplace. A mixed research method approach was employed to undertake the study. A self-administered questionnaire was distributed to public servants employed within the South-East District Council (SEDC and literature related to corruption and whistle-blowing was reviewed. The findings indicate that public service employees strongly support the role whistle-blowing has to play in curbing corruption in the workplace, particularly if the corrupt activity could potentially threaten people’s lives and suppress social justice. However, the absence of whistle-blower protection measures was cited as the most significant impediment to reporting wrongdoing. The article proposes the need for the SEDC to adopt effective policies and procedures that place a strong emphasis on providing protection for employees to disclose misconduct and fraudulent conduct.

Manufacturing a Porous Structure According to the Process Parameters of Functional 3D Porous Polymer Printing Technology Based on a Chemical Blowing Agent

Science.gov (United States)

Yoo, C. J.; Shin, B. S.; Kang, B. S.; Yun, D. H.; You, D. B.; Hong, S. M.

2017-09-01

In this paper, we propose a new porous polymer printing technology based on CBA(chemical blowing agent), and describe the optimization process according to the process parameters. By mixing polypropylene (PP) and CBA, a hybrid CBA filament was manufactured; the diameter of the filament ranged between 1.60 mm and 1.75 mm. A porous polymer structure was manufactured based on the traditional fused deposition modelling (FDM) method. The process parameters of the three-dimensional (3D) porous polymer printing (PPP) process included nozzle temperature, printing speed, and CBA density. Porosity increase with an increase in nozzle temperature and CBA density. On the contrary, porosity increase with a decrease in the printing speed. For porous structures, it has excellent mechanical properties. We manufactured a simple shape in 3D using 3D PPP technology. In the future, we will study the excellent mechanical properties of 3D PPP technology and apply them to various safety fields.

Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis.

Science.gov (United States)

Sha, A H; Lin, X H; Huang, J B; Zhang, D P

2005-07-01

DNA methylation is known to play an important role in the regulation of gene expression in eukaryotes. The rice cultivar Wase Aikoku 3 becomes resistant to the blight pathogen Xanthomonas oryzae pv. oryzae at the adult stage. Using methylation-sensitive amplified polymorphism (MSAP) analysis, we compared the patterns of cytosine methylation in seedlings and adult plants of the rice cultivar Wase Aikoku 3 that had been inoculated with the pathogen Xanthomonas oryzae pv. oryzae, subjected to mock inoculation or left untreated. In all, 2000 DNA fragments, each representing a recognition site cleaved by either or both of two isoschizomers, were amplified using 60 pairs of selective primers. A total of 380 sites were found to be methylated. Of these, 45 showed differential cytosine methylation among the seedlings and adult plants subjected to different treatments, and overall levels of methylation were higher in adult plants than in seedlings. All polymorphic fragments were sequenced, and six showed homology to genes that code for products of known function. Northern analysis of three fragments indicated that their expression varied with methylation pattern, with hypermethylation being correlated with repression of transcription, as expected. The results suggest that significant differences in cytosine methylation exist between seedlings and adult plants, and that hypermethylation or hypomethylation of specific genes may be involved in the development of adult plant resistance (APR) in rice plants.

Extensive genetic and DNA methylation variation contribute to heterosis in triploid loquat hybrids.

Science.gov (United States)

Liu, Chao; Wang, Mingbo; Wang, Lingli; Guo, Qigao; Liang, Guolu

2018-04-24

We aim to overcome the unclear origin of the loquat and elucidate the heterosis mechanism of the triploid loquat. Here we investigated the genetic and epigenetic variations between the triploid plant and its parental lines using amplified fragment length polymorphism (AFLP) and methylation-sensitive amplified fragment length polymorphism (MSAP) analyses. We show that in addition to genetic variations, extensive DNA methylation variation occurred during the formation process of triploid loquat, with the triploid hybrid having increased DNA methylation compared to the parents. Furthermore, a correlation existed between genetic variation and DNA methylation remodeling, suggesting that genome instability may lead to DNA methylation variation or vice versa. Sequence analysis of the MSAP bands revealed that over 53% of them overlap with protein-coding genes, which may indicate a functional role of the differential DNA methylation in gene regulation and hence heterosis phenotypes. Consistent with this, the genetic and epigenetic alterations were associated closely to the heterosis phenotypes of triploid loquat, and this association varied for different traits. Our results suggested that the formation of triploid is accompanied by extensive genetic and DNA methylation variation, and these changes contribute to the heterosis phenotypes of the triploid loquats from the two cross lines.

Shock tube/laser absorption studies of the decomposition of methyl formate

KAUST Repository

Ren, Wei; Lam, Kingyiu; Pyun, Sunghyun; Farooq, Aamir; Davidson, David Frank; Hanson, Ronald Kenneth

2013-01-01

Reaction rate coefficients for the major high-temperature methyl formate (MF, CH3OCHO) decomposition pathways, MF → CH3OH + CO (1), MF →CH2O+CH2O (2), and MF→ CH4 + CO2 (3), were directly measured in a shock tube using laser absorption of CO (4.6 μm), CH2O (306 nm) and CH4 (3.4 μm). Experimental conditions ranged from 1202 to 1607 K and 1.36 to 1.72 atm, with mixtures varying in initial fuel concentration from 0.1% to 3% MF diluted in argon. The decomposition rate coefficients were determined by monitoring the formation rate of each target species immediately behind the reflected shock waves and modeling the species time-histories with a detailed kinetic mechanism [12]. The three measured rate coefficients can be well-described using two-parameter Arrhenius expressions over the temperature range in the present study: k1 = 1.1 × 1013 exp(-29556/T, K) s -1, k2 = 2.6 × 1012 exp(-32052/T, K) s-1, and k3 = 4.4 × 1011 exp(-29 078/T, K) s-1, all thought to be near their high-pressure limits. Uncertainties in the k1, k2 and k3 measurements were estimated to be ±25%, ±35%, and ±40%, respectively. We believe that these are the first direct high-temperature rate measurements for MF decomposition and all are in excellent agreement with the Dooley et al. [12] mechanism. In addition, by also monitoring methanol (CH3OH) and MF concentration histories using a tunable CO2 gas laser operating at 9.67 and 9.23 μm, respectively, all the major oxygen-carrying molecules were quantitatively detected in the reaction system. An oxygen balance analysis during MF decomposition shows that the multi-wavelength laser absorption strategy used in this study was able to track more than 97% of the initial oxygen atoms in the fuel. © 2012 The Combustion Institute. Published by Elsevier Inc. All rights reserved.

Finite Element Modeling of Reheat Stretch Blow Molding of PET

Science.gov (United States)

Krishnan, Dwarak; Dupaix, Rebecca B.

2004-06-01

Poly (ethylene terephthalate) or PET is a polymer used as a packaging material for consumer products such as beverages, food or other liquids, and in other applications including drawn fibers and stretched films. Key features that make it widely used are its transparency, dimensional stability, gas impermeability, impact resistance, and high stiffness and strength in certain preferential directions. These commercially useful properties arise from the fact that PET crystallizes upon deformation above the glass transition temperature. Additionally, this strain-induced crystallization causes the deformation behavior of PET to be highly sensitive to processing conditions. It is thus crucial for engineers to be able to predict its performance at various process temperatures, strain rates and strain states so as to optimize the manufacturing process. In addressing these issues; a finite element analysis of the reheat blow molding process with PET has been carried out using ABAQUS. The simulation employed a constitutive model for PET developed by Dupaix and Boyce et al.. The model includes the combined effects of molecular orientation and strain-induced crystallization on strain hardening when the material is deformed above the glass transition temperature. The simulated bottles were also compared with actual blow molded bottles to evaluate the validity of the simulation.

STAR FORMATION IN ULTRA-FAINT DWARFS: CONTINUOUS OR SINGLE-AGE BURSTS?

International Nuclear Information System (INIS)

Webster, David; Bland-Hawthorn, Joss; Sutherland, Ralph

2015-01-01

We model the chemical evolution of six ultra-faint dwarfs (UFDs): Bootes I, Canes Venatici II, Coma Berenices, Hercules, Leo IV, and Ursa Major I based on their recently determined star formation histories. We show that two single-age bursts cannot explain the observed [α/Fe] versus [Fe/H] distribution in these galaxies and that some self-enrichment is required within the first burst. An alternative scenario is modeled, in which star formation is continuous except for short interruptions when one or more supernovae temporarily blow the dense gas out from the center of the system. This model allows for self-enrichment and can reproduce the chemical abundances of the UFDs in which the second burst is only a trace population. We conclude that the most likely star formation history is one or two extended periods of star formation, with the first burst lasting for at least 100 Myr. As found in earlier work, the observed properties of UFDs can be explained by formation at a low mass (M vir ∼10 7 M ⊙ ), rather than being stripped remnants of much larger systems

STAR FORMATION IN ULTRA-FAINT DWARFS: CONTINUOUS OR SINGLE-AGE BURSTS?

Energy Technology Data Exchange (ETDEWEB)

Webster, David; Bland-Hawthorn, Joss [Sydney Institute for Astronomy, School of Physics, University of Sydney, NSW 2006 (Australia); Sutherland, Ralph, E-mail: d.webster@physics.usyd.edu.au [Research School of Astronomy and Astrophysics, Australian National University, Cotter Rd, Weston, ACT 2611 (Australia)

2015-01-30

We model the chemical evolution of six ultra-faint dwarfs (UFDs): Bootes I, Canes Venatici II, Coma Berenices, Hercules, Leo IV, and Ursa Major I based on their recently determined star formation histories. We show that two single-age bursts cannot explain the observed [α/Fe] versus [Fe/H] distribution in these galaxies and that some self-enrichment is required within the first burst. An alternative scenario is modeled, in which star formation is continuous except for short interruptions when one or more supernovae temporarily blow the dense gas out from the center of the system. This model allows for self-enrichment and can reproduce the chemical abundances of the UFDs in which the second burst is only a trace population. We conclude that the most likely star formation history is one or two extended periods of star formation, with the first burst lasting for at least 100 Myr. As found in earlier work, the observed properties of UFDs can be explained by formation at a low mass (M{sub vir}∼10{sup 7} M{sub ⊙}), rather than being stripped remnants of much larger systems.

Criteria on global boundedness versus finite time blow-up to a two-species chemotaxis system with two chemicals

Science.gov (United States)

Yu, Hao; Wang, Wei; Zheng, Sining

2018-02-01

This paper considers the two-species chemotaxis system with two chemicals in a smooth bounded domain Ω\\subset{R}2 , subject to the non-flux boundary condition, and χ, ξ, α, β, γ, δ>0 . We obtain a blow-up criterion that if m_1m_2-2π(\\frac{m_1}χβ+\\frac{m_2}ξδ)>0 , then there exist finite time blow-up solutions to the system with m_1:=\\int_Ω u_0(x)dx and m_2:=\\int_Ω w_0(x)dx . When χ=ξ= β=δ=1 , the blow-up criterion becomes m_1m_2-2π(m_1+m_2)>0 , and the global boundedness of solutions is furthermore established with α=γ=1 under the condition that \\max\\{m_1, m_2\\}4π and global boundedness with \\max\\{m_1, m_2\\}Funds for the Central Universities (DUT16LK24).

Epigenetics in Alzheimer's Disease: Perspective of DNA Methylation.

Science.gov (United States)

Qazi, Talal Jamil; Quan, Zhenzhen; Mir, Asif; Qing, Hong

2018-02-01

Research over the years has shown that causes of Alzheimer's disease are not well understood, but over the past years, the involvement of epigenetic mechanisms in the developing memory formation either under pathological or physiological conditions has become clear. The term epigenetics represents the heredity of changes in phenotype that are independent of altered DNA sequences. Different studies validated that cytosine methylation of genomic DNA decreases with age in different tissues of mammals, and therefore, the role of epigenetic factors in developing neurological disorders in aging has been under focus. In this review, we summarized and reviewed the involvement of different epigenetic mechanisms especially the DNA methylation in Alzheimer's disease (AD), late-onset Alzheimer's disease (LOAD), familial Alzheimer's disease (FAD), and autosomal dominant Alzheimer's disease (ADAD). Down to the minutest of details, we tried to discuss the methylation patterns like mitochondrial DNA methylation and ribosomal DNA (rDNA) methylation. Additionally, we mentioned some therapeutic approaches related to epigenetics, which could provide a potential cure for AD. Moreover, we reviewed some recent studies that validate DNA methylation as a potential biomarker and its role in AD. We hope that this review will provide new insights into the understanding of AD pathogenesis from the epigenetic perspective especially from the perspective of DNA methylation.

Longitudinal phase space characterization of the blow-out regime of rf photoinjector operation

Directory of Open Access Journals (Sweden)

J. T. Moody

2009-07-01

Full Text Available Using an experimental scheme based on a vertically deflecting rf deflector and a horizontally dispersing dipole, we characterize the longitudinal phase space of the beam in the blow-out regime at the UCLA Pegasus rf photoinjector. Because of the achievement of unprecedented resolution both in time (50 fs and energy (1.0 keV, we are able to demonstrate some important properties of the beams created in this regime such as extremely low longitudinal emittance, large temporal energy chirp, and the degrading effects of the cathode image charge in the longitudinal phase space which eventually leads to poorer beam quality. All of these results have been found in good agreement with simulations.

Atmospheric fate of methyl vinyl ketone

DEFF Research Database (Denmark)

Praske, Eric; Crounse, John D; Bates, Kelvin H

2015-01-01

First generation product yields from the OH-initiated oxidation of methyl vinyl ketone (3-buten-2-one, MVK) under both low and high NO conditions are reported. In the low NO chemistry, three distinct reaction channels are identified leading to the formation of (1) OH, glycolaldehyde, and acetyl...

NAFTA Students'Whistle-blowing Perceptions: A Case of Sexual Harassme

OpenAIRE

Peek, L., M; Roxas, G. Peek; Robichaud, B; Covarrubias; J. Barragan

2005-01-01

Whistle-blowing mechanisms in the U.S. have gained more prominence as an element of legal compliance and antifraud programs. Sexual harassment is a significant business risk in terms of financial costs and the loss of reputation. lt is important for corporations to develop sexual harassment policies and to provide mechanisms for employees toreport sexual harassment behaviors to upper level management. This paper reports on business students' responses to a possible Sexual Harassment scenar...

Development of blow down and sodium-water reaction jet analysis codes-Validation by sodium-water reaction tests (SWAT-1R)

International Nuclear Information System (INIS)

Hiroshi Seino; Akikazu Kurihara; Isao Ono; Koji Jitsu

2005-01-01

Blow down analysis code (LEAP-BLOW) and sodium-water reaction jet analysis code (LEAP-JET) have been developed in order to improve the evaluation method on sodium-water reaction event in the steam generator (SG) of a sodium cooled fast breeder reactor (FBR). The validation analyses by these two codes were carried out using the data of Sodium-Water Reaction Test (SWAT-1R). The following main results have been obtained through this validation: (1) The calculational results by LEAP-BLOW such as internal pressure and water flow rate show good agreement with the results of the SWAT- 1R test. (2) The LEAP-JET code can qualitatively simulate the behavior of sodium-water reaction. However, it is found that the code has tendency to overestimate the maximum temperature of the reaction jet. (authors)

MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics.

Science.gov (United States)

Pandey, Ram Vinay; Pulverer, Walter; Kallmeyer, Rainer; Beikircher, Gabriel; Pabinger, Stephan; Kriegner, Albert; Weinhäusel, Andreas

2016-01-01

Bisulfite (BS) conversion-based and methylation-sensitive restriction enzyme (MSRE)-based PCR methods have been the most commonly used techniques for locus-specific DNA methylation analysis. However, both methods have advantages and limitations. Thus, an integrated approach would be extremely useful to quantify the DNA methylation status successfully with great sensitivity and specificity. Designing specific and optimized primers for target regions is the most critical and challenging step in obtaining the adequate DNA methylation results using PCR-based methods. Currently, no integrated, optimized, and high-throughput methylation-specific primer design software methods are available for both BS- and MSRE-based methods. Therefore an integrated, powerful, and easy-to-use methylation-specific primer design pipeline with great accuracy and success rate will be very useful. We have developed a new web-based pipeline, called MSP-HTPrimer, to design primers pairs for MSP, BSP, pyrosequencing, COBRA, and MSRE assays on both genomic strands. First, our pipeline converts all target sequences into bisulfite-treated templates for both forward and reverse strand and designs all possible primer pairs, followed by filtering for single nucleotide polymorphisms (SNPs) and known repeat regions. Next, each primer pairs are annotated with the upstream and downstream RefSeq genes, CpG island, and cut sites (for COBRA and MSRE). Finally, MSP-HTPrimer selects specific primers from both strands based on custom and user-defined hierarchical selection criteria. MSP-HTPrimer produces a primer pair summary output table in TXT and HTML format for display and UCSC custom tracks for resulting primer pairs in GTF format. MSP-HTPrimer is an integrated, web-based, and high-throughput pipeline and has no limitation on the number and size of target sequences and designs MSP, BSP, pyrosequencing, COBRA, and MSRE assays. It is the only pipeline, which automatically designs primers on both genomic

DNA sequence explains seemingly disordered methylation levels in partially methylated domains of Mammalian genomes.

Directory of Open Access Journals (Sweden)

Dimos Gaidatzis

2014-02-01

Full Text Available For the most part metazoan genomes are highly methylated and harbor only small regions with low or absent methylation. In contrast, partially methylated domains (PMDs, recently discovered in a variety of cell lines and tissues, do not fit this paradigm as they show partial methylation for large portions (20%-40% of the genome. While in PMDs methylation levels are reduced on average, we found that at single CpG resolution, they show extensive variability along the genome outside of CpG islands and DNase I hypersensitive sites (DHS. Methylation levels range from 0% to 100% in a roughly uniform fashion with only little similarity between neighboring CpGs. A comparison of various PMD-containing methylomes showed that these seemingly disordered states of methylation are strongly conserved across cell types for virtually every PMD. Comparative sequence analysis suggests that DNA sequence is a major determinant of these methylation states. This is further substantiated by a purely sequence based model which can predict 31% (R(2 of the variation in methylation. The model revealed CpG density as the main driving feature promoting methylation, opposite to what has been shown for CpG islands, followed by various dinucleotides immediately flanking the CpG and a minor contribution from sequence preferences reflecting nucleosome positioning. Taken together we provide a reinterpretation for the nucleotide-specific methylation levels observed in PMDs, demonstrate their conservation across tissues and suggest that they are mainly determined by specific DNA sequence features.

Thermodynamic properties of the methyl esters of p-hydroxy and p-methoxy benzoic acids

International Nuclear Information System (INIS)

Almeida, Ana R.R.P.; Cunha, André F.G.; Matos, M. Agostinha R.; Morais, Victor M.F.

2014-01-01

Highlights: • Vapor pressures and energies of combustion of two methyl benzoates were measured. • Standard molar ΔH, ΔS and ΔG of sublimation and vaporization were derived. • Standard molar ΔH, ΔS and ΔG of formation in crystal and gas phases were calculated. • Gas phase ΔH of formation was also estimated by quantum chemical calculations. • ΔH of the intermolecular hydrogen bond O–H⋯O was estimated. - Abstract: The vapor pressures of crystalline and liquid phases of methyl p-hydroxybenzoate and of methyl p-methoxybenzoate were measured over the temperature ranges (338.9 to 423.7) K and (292.0 to 355.7) K respectively, using a static method based on diaphragm capacitance gauges. The vapor pressures of the crystalline phase of the former compound were also measured in the temperature range (323.1 to 345.2) K using a Knudsen mass-loss effusion technique. The results enabled the determination of the standard molar enthalpies, entropies and Gibbs free energies of sublimation and of vaporization, at T = 298.15 K, as well as phase diagram representations of the (p, T) experimental data, including the triple point. The temperatures and molar enthalpies of fusion of both compounds were determined using differential scanning calorimetry and were compared with the results indirectly derived from the vapor pressure measurements. The standard (p° = 10 5 Pa) molar enthalpies of formation, in the crystalline phase, at T = 298.15 K, of the compounds studied were derived from their standard massic energies of combustion measured by static-bomb combustion calorimetry. From the experimental results, the standard molar enthalpies of formation, in the gaseous phase at T = 298.15 K, were calculated and compared with the values estimated by employing quantum chemical computational calculations. A good agreement between experimental and theoretical results is observed. To analyze the thermodynamic stability of the two compounds studied, the standard Gibbs free

A DNA microarray-based methylation-sensitive (MS)-AFLP hybridization method for genetic and epigenetic analyses.

Science.gov (United States)

Yamamoto, F; Yamamoto, M

2004-07-01

We previously developed a PCR-based DNA fingerprinting technique named the Methylation Sensitive (MS)-AFLP method, which permits comparative genome-wide scanning of methylation status with a manageable number of fingerprinting experiments. The technique uses the methylation sensitive restriction enzyme NotI in the context of the existing Amplified Fragment Length Polymorphism (AFLP) method. Here we report the successful conversion of this gel electrophoresis-based DNA fingerprinting technique into a DNA microarray hybridization technique (DNA Microarray MS-AFLP). By performing a total of 30 (15 x 2 reciprocal labeling) DNA Microarray MS-AFLP hybridization experiments on genomic DNA from two breast and three prostate cancer cell lines in all pairwise combinations, and Southern hybridization experiments using more than 100 different probes, we have demonstrated that the DNA Microarray MS-AFLP is a reliable method for genetic and epigenetic analyses. No statistically significant differences were observed in the number of differences between the breast-prostate hybridization experiments and the breast-breast or prostate-prostate comparisons.

Hypochlorous acid turn-on boron dipyrromethene probe based on oxidation of methyl phenyl sulfide

International Nuclear Information System (INIS)

Liu, Shi-Rong; Vedamalai, Mani; Wu, Shu-Pao

2013-01-01

Graphical abstract: -- Highlights: •A BODIPY-based green fluorescent probe for sensing HOCl was developed. •The probe utilizes HOCl-promoted oxidation of methyl phenyl sulfide to produce a proportional fluorescence response to the concentration of HOCl. •Confocal fluorescence microscopy imaging of RAW264.7 cells demonstrated that the HCS probe might have application in the investigation of HOCl roles in biological systems. -- Abstract: A boron dipyrromethene (BODIPY)-based fluorometric probe, HCS, has been successfully developed for the highly sensitive and selective detection of hypochlorous acid (HOCl). The probe is based on the specific HOCl-promoted oxidation of methyl phenyl sulfide. The reaction is accompanied by a 160-fold increase in the fluorescent quantum yield (from 0.003 to 0.480). The fluorescent turn-on mechanism is accomplished by suppression of photoinduced electron transfer (PET) from the methyl phenyl sulfide group to BODIPY. The fluorescence intensity of the reaction between HOCl and HCS shows a good linearity in the HOCl concentration range 1–10 μM. The detection limit is 23.7 nM (S/N = 3). In addition, confocal fluorescence microscopy imaging using RAW264.7 macrophages demonstrates that the HCS probe could be an efficient fluorescent detector for HOCl in living cells

Hypochlorous acid turn-on boron dipyrromethene probe based on oxidation of methyl phenyl sulfide

Energy Technology Data Exchange (ETDEWEB)

Liu, Shi-Rong; Vedamalai, Mani; Wu, Shu-Pao, E-mail: spwu@mail.nctu.edu.tw

2013-10-24

Graphical abstract: -- Highlights: •A BODIPY-based green fluorescent probe for sensing HOCl was developed. •The probe utilizes HOCl-promoted oxidation of methyl phenyl sulfide to produce a proportional fluorescence response to the concentration of HOCl. •Confocal fluorescence microscopy imaging of RAW264.7 cells demonstrated that the HCS probe might have application in the investigation of HOCl roles in biological systems. -- Abstract: A boron dipyrromethene (BODIPY)-based fluorometric probe, HCS, has been successfully developed for the highly sensitive and selective detection of hypochlorous acid (HOCl). The probe is based on the specific HOCl-promoted oxidation of methyl phenyl sulfide. The reaction is accompanied by a 160-fold increase in the fluorescent quantum yield (from 0.003 to 0.480). The fluorescent turn-on mechanism is accomplished by suppression of photoinduced electron transfer (PET) from the methyl phenyl sulfide group to BODIPY. The fluorescence intensity of the reaction between HOCl and HCS shows a good linearity in the HOCl concentration range 1–10 μM. The detection limit is 23.7 nM (S/N = 3). In addition, confocal fluorescence microscopy imaging using RAW264.7 macrophages demonstrates that the HCS probe could be an efficient fluorescent detector for HOCl in living cells.

Pattern injuries from blows with the muzzle end of a handgun.

Science.gov (United States)

Geisenberger, D; Vogt, S; Pircher, R; Kramer, L; Pollak, S; Große Perdekamp, M

2015-12-01

Pistols, revolvers and blank guns are not only used to discharge cartridges, but also for hits to the victim. In such cases, the blows preferably affect the head and/or the interposed hands protecting the body. The impact is mostly exerted either by the grip of a pistol or the butt of a revolver. In vigorous thrusts inflicted with the muzzle end of the weapon, the edge of the barrel may produce circular punch lesions with central skin flaps roughly corresponding to the bore. As in other kinds of pistol-whipping, the scalp wounds may be associated with fractures of the skull and even with brain contusions. Using the example of a homicide committed by pistol-whipping, the morphological features of blunt injuries from a handgun's muzzle are presented. The characteristic wound pattern found on the victim's head could be reproduced experimentally by forceful blows to the forehead of a slaughtered pig. In the case presented, the dominant hand of the perpetrator showed friction blisters due to prolonged striking with an unhandy tool in the form of a pistol. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Role of α-Dicarbonyl Compounds in the Inhibition Effect of Reducing Sugars on the Formation of 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine.

Science.gov (United States)

Han, Zhonghui; Liu, Bing; Niu, Zhiyan; Zhang, Yan; Gao, Jianxin; Shi, Lei; Wang, Shujun; Wang, Shuo

2017-11-22

The effect of reducing sugars on formation of PhIP in fried pork was investigated, and the underlying mechanisms were revealed by studying the reaction pathways between α-dicarbonyl compounds (α-DCs) and PhIP. The addition of reducing sugars (such as glucose) greatly reduced the amount of PhIP in fried pork from 15.5 ng/g to less than 1.0 ng/g. The amount of PhIP decreased significantly with an increasing level of added α-DCs in model systems. Similarly, the addition of methylglyoxal (MGO) decreased significantly the levels of phenylalanine (Phe) and creatinine (Crn) but increased significantly the level of phenylacetaldehyde (PEA). 2-Amino-1-methyl-5-(2-oxopropylidene)-imidazol-4-one and N-(1-methyl-4-oxoimidazolidin-2-ylidene) amino propionic acids were identified in MGO/Crn and MGO/Crn/Phe model systems and fried pork with glucose. These results revealed that the degradation products of reducing sugars-α-DCs-play an important role in inhibiting formation of PhIP by reacting with key precursors of PhIP and itself.

Non-standard base pairing and stacked structures in methyl xanthine clusters

Czech Academy of Sciences Publication Activity Database

Callahan, M. P.; Gengeliczki, Z.; Svadlenak, N.; Valdes, Haydee; Hobza, Pavel; de Vries, M. S.

2008-01-01

Roč. 10, č. 19 (2008), s. 2819-2826 ISSN 1463-9076 R&D Projects: GA MŠk LC512 Grant - others:NSF(US) CHE-0615401 Institutional research plan: CEZ:AV0Z40550506 Keywords : non-standard base pairing * stacked structures * in methyl xanthine Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 4.064, year: 2008

Numerical modeling of plasma plume evolution against ambient background gas in laser blow off experiments

International Nuclear Information System (INIS)

Patel, Bhavesh G.; Das, Amita; Kaw, Predhiman; Singh, Rajesh; Kumar, Ajai

2012-01-01

Two dimensional numerical modelling based on simplified hydrodynamic evolution for an expanding plasma plume (created by laser blow off) against an ambient background gas has been carried out. A comparison with experimental observations shows that these simulations capture most features of the plasma plume expansion. The plume location and other gross features are reproduced as per the experimental observation in quantitative detail. The plume shape evolution and its dependence on the ambient background gas are in good qualitative agreement with the experiment. This suggests that a simplified hydrodynamic expansion model is adequate for the description of plasma plume expansion.

Computational modeling and analysis of heavy water losses in boiler blow down with different positions of BBW-V100 at KANUPP

International Nuclear Information System (INIS)

Maqbool, M. U.

2012-01-01

The term blowdown is referred to the boilers and steam generators. Blowing down water from the steam generators maintains the chemistry of the feedwater and helps prevent scaling or sludge formation. In a nuclear power plant, the primary loop contains some activity in the form of tritium content. In boilers, primary and secondary systems interface and due to the pressure difference there is always a chance of mixing of primary and secondary fluids in event of tube leak. This primary fluid i.e., heavy water in our case can be lost through the blowdown lines after mixing with the feedwater. This thesis is a computational work for the determination of heavy water losses through the blowdown lines. (author)

Fast imaging of the laser-blow-off plume driven shock wave: Dependence on the mass and density of the ambient gas

Energy Technology Data Exchange (ETDEWEB)

George, Sony [ISP, Cochin University of Science and Tech., Cochin 682 022 (India); Singh, R.K., E-mail: rajesh@ipr.res.in [Institute for Plasma Research, Gandhinagar 382 428 (India); Nampoori, V.P.N. [ISP, Cochin University of Science and Tech., Cochin 682 022 (India); Kumar, Ajai [Institute for Plasma Research, Gandhinagar 382 428 (India)

2013-01-17

A systemic investigation of expansion dynamics of plasma plume, produced by laser-blow-off of LiF–C thin film has been done with emphasis on the formation of shock wave and their dependence on the pressure and nature of the ambient gas. The present results demonstrate that highly directional plume produces a strong shock wave in comparison to shock produced by the diverging plume. Shock-velocity, strength and its structure are strongly dependent on ambient environment; maximum shock velocity is observed in helium whereas shock strength is highest in argon environment. The role of chemically reactive processes was not observed in the present case as the plume structure is almost similar in argon and oxygen.

Preliminary individualized chemotherapy for malignant astrocytomas based on O6-methylguanine-deoxyribonucleic acid methyltransferase methylation analysis.

Science.gov (United States)

Watanabe, Takao; Katayama, Yoichi; Ogino, Akiyoshi; Ohta, Takashi; Yoshino, Atsuo; Fukushima, Takao

2006-08-01

O(6)-methylguanine-deoxyribonucleic acid methyltransferase gene (MGMT) methylation is apparently correlated with responsiveness to nitrosourea chemotherapy, suggesting this alkylating agent should be effective against MGMT-methylated tumors. MGMT appears not to be linked to platinum resistance, so platinum chemotherapy should be used for MGMT-unmethylated tumors. This study was a preliminary trial of individualized chemotherapy based on MGMT methylation status in a total of 20 patients with newly diagnosed malignant astrocytomas (9 anaplastic astrocytomas and 11 glioblastomas multiforme). The procarbazine, 1-(4-amino-2-methyl-5-pyrimidinyl)methyl-3-2(2-chloroethyl)-3-nitrosourea, and vincristine (PAV) regimen was administered to seven patients with MGMT-methylated tumors, and the carboplatin and etoposide (CE) regimen was administered to 13 patients with MGMT-unmethylated tumors. Objective response to the PAV therapy was noted in all three patients with measurable residual tumor (2 complete responses and 1 partial response). Five of the seven patients continued to be disease-free after initiation of the PAV therapy. Objective response to the CE therapy was seen in only one of seven patients with measurable residual tumor (1 partial response). Three of the 13 patients were free from progression, whereas the remaining 10 patients showed early progression. The PAV regimen is effective against MGMT-methylated malignant astrocytomas, but the CE regimen is not useful at the given dose and schedule in MGMT-unmethylated tumors.

Simulative design and process optimization of the two-stage stretch-blow molding process

Energy Technology Data Exchange (ETDEWEB)

Hopmann, Ch.; Rasche, S.; Windeck, C. [Institute of Plastics Processing at RWTH Aachen University (IKV) Pontstraße 49, 52062 Aachen (Germany)

2015-05-22

The total production costs of PET bottles are significantly affected by the costs of raw material. Approximately 70 % of the total costs are spent for the raw material. Therefore, stretch-blow molding industry intends to reduce the total production costs by an optimized material efficiency. However, there is often a trade-off between an optimized material efficiency and required product properties. Due to a multitude of complex boundary conditions, the design process of new stretch-blow molded products is still a challenging task and is often based on empirical knowledge. Application of current CAE-tools supports the design process by reducing development time and costs. This paper describes an approach to determine optimized preform geometry and corresponding process parameters iteratively. The wall thickness distribution and the local stretch ratios of the blown bottle are calculated in a three-dimensional process simulation. Thereby, the wall thickness distribution is correlated with an objective function and preform geometry as well as process parameters are varied by an optimization algorithm. Taking into account the correlation between material usage, process history and resulting product properties, integrative coupled simulation steps, e.g. structural analyses or barrier simulations, are performed. The approach is applied on a 0.5 liter PET bottle of Krones AG, Neutraubling, Germany. The investigations point out that the design process can be supported by applying this simulative optimization approach. In an optimization study the total bottle weight is reduced from 18.5 g to 15.5 g. The validation of the computed results is in progress.

Simulative design and process optimization of the two-stage stretch-blow molding process

International Nuclear Information System (INIS)

Hopmann, Ch.; Rasche, S.; Windeck, C.

2015-01-01

The total production costs of PET bottles are significantly affected by the costs of raw material. Approximately 70 % of the total costs are spent for the raw material. Therefore, stretch-blow molding industry intends to reduce the total production costs by an optimized material efficiency. However, there is often a trade-off between an optimized material efficiency and required product properties. Due to a multitude of complex boundary conditions, the design process of new stretch-blow molded products is still a challenging task and is often based on empirical knowledge. Application of current CAE-tools supports the design process by reducing development time and costs. This paper describes an approach to determine optimized preform geometry and corresponding process parameters iteratively. The wall thickness distribution and the local stretch ratios of the blown bottle are calculated in a three-dimensional process simulation. Thereby, the wall thickness distribution is correlated with an objective function and preform geometry as well as process parameters are varied by an optimization algorithm. Taking into account the correlation between material usage, process history and resulting product properties, integrative coupled simulation steps, e.g. structural analyses or barrier simulations, are performed. The approach is applied on a 0.5 liter PET bottle of Krones AG, Neutraubling, Germany. The investigations point out that the design process can be supported by applying this simulative optimization approach. In an optimization study the total bottle weight is reduced from 18.5 g to 15.5 g. The validation of the computed results is in progress

Techno-economic and carbon footprint assessment of methyl crotonate and methyl acrylate production from wastewater-based polyhydroxybutyrate (PHB)

NARCIS (Netherlands)

Fernandez Dacosta, C.; Posada, John A.; Ramirez, C.A.

2016-01-01

This paper assesses whether a cleaner and more sustainable production of the chemical building blocks methyl crotonate (MC) and methyl acrylate (MA) can be obtained in an innovative process in which resource consumption, waste generation and environmental impacts are minimized by using

Evidence for non-CpG methylation in mammals

DEFF Research Database (Denmark)

Yan, Jie; Zierath, Juleen R; Barres, Romain

2011-01-01

In mammals, the existence of cytosine methylation on non-CpG sequences is controversial. Here, we adapted a LuminoMetric-based Assay (LUMA) to determine global non-CpG methylation levels in rodent and human tissues. We observed that......In mammals, the existence of cytosine methylation on non-CpG sequences is controversial. Here, we adapted a LuminoMetric-based Assay (LUMA) to determine global non-CpG methylation levels in rodent and human tissues. We observed that...

Quantifying pteridines in the heads of blow flies (Diptera: Calliphoridae): Application for forensic entomology.

Science.gov (United States)

Cammack, J A; Reiskind, M H; Guisewite, L M; Denning, S S; Watson, D W

2017-11-01

In forensic cases involving entomological evidence, establishing the postcolonization interval (post-CI) is a critical component of the investigation. Traditional methods of estimating the post-CI rely on estimating the age of immature blow flies (Diptera: Calliphoridae) collected from remains. However, in cases of delayed discovery (e.g., when remains are located indoors), these insects may have completed their development and be present in the environment as adults. Adult fly collections are often ignored in cases of advanced decomposition because of a presumed little relevance to the investigation; herein we present information on how these insects can be of value. In this study we applied an age-grading technique to estimate the age of adults of Chrysomya megacephala (Fabricius), Cochliomyia macellaria (Fabricius), and Phormia regina (Meigen), based on the temperature-dependent accumulation of pteridines in the compound eyes, when reared at temperatures ranging from 5 to 35°C. Age could be estimated for all species*sex*rearing temperature combinations (mean r 2 ±SE: 0.90±0.01) for all but P. regina reared at 5.4°C. These models can be used to increase the precision of post-CI estimates for remains found indoors, and the high r 2 values of 22 of the 24 regression equations indicates that this is a valid method for estimating the age of adult blow flies at temperatures ≥15°C. Copyright © 2017 Elsevier B.V. All rights reserved.

QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model.

Science.gov (United States)

Liu, Lian; Zhang, Shao-Wu; Huang, Yufei; Meng, Jia

2017-08-31

As a newly emerged research area, RNA epigenetics has drawn increasing attention recently for the participation of RNA methylation and other modifications in a number of crucial biological processes. Thanks to high throughput sequencing techniques, such as, MeRIP-Seq, transcriptome-wide RNA methylation profile is now available in the form of count-based data, with which it is often of interests to study the dynamics at epitranscriptomic layer. However, the sample size of RNA methylation experiment is usually very small due to its costs; and additionally, there usually exist a large number of genes whose methylation level cannot be accurately estimated due to their low expression level, making differential RNA methylation analysis a difficult task. We present QNB, a statistical approach for differential RNA methylation analysis with count-based small-sample sequencing data. Compared with previous approaches such as DRME model based on a statistical test covering the IP samples only with 2 negative binomial distributions, QNB is based on 4 independent negative binomial distributions with their variances and means linked by local regressions, and in the way, the input control samples are also properly taken care of. In addition, different from DRME approach, which relies only the input control sample only for estimating the background, QNB uses a more robust estimator for gene expression by combining information from both input and IP samples, which could largely improve the testing performance for very lowly expressed genes. QNB showed improved performance on both simulated and real MeRIP-Seq datasets when compared with competing algorithms. And the QNB model is also applicable to other datasets related RNA modifications, including but not limited to RNA bisulfite sequencing, m 1 A-Seq, Par-CLIP, RIP-Seq, etc.

Fabrication of three-dimensional micro-nanofiber structures by a novel solution blow spinning device

Directory of Open Access Journals (Sweden)

Feng Liang

2017-02-01

Full Text Available The fabrication of three-dimensional scaffolds has attracted more attention in tissue engineering. The purpose of this study is to explore a new method for the fabrication of three-dimensional micro-nanofiber structures by combining solution blow spinning and rotating collector. In this study, we successfully fabricated fibers with a minimum diameter of 200 nm and a three-dimensional structure with a maximum porosity of 89.9%. At the same time, the influence of various parameters such as the solvent volatility, the shape of the collector, the feed rate of the solution and the applied gas pressure were studied. It is found that solvent volatility has large effect on the formation of the three-dimensional shape of the structure. The shape of the collector affects the porosity and fiber distribution of the three-dimensional structure. The fiber diameter and fiber uniformity can be controlled by adjusting the solution feed rate and the applied gas pressure. It is feasible to fabricate high-quality three-dimensional micro-nanofiber structure by this new method, which has great potential in tissue engineering.

Soot blowing methods and soot steam consumption in Swedish recovery boilers; Sotningsmetoder och sotaangfoerbrukning i svenska sodapannor

Energy Technology Data Exchange (ETDEWEB)

Svedin, Kristoffer; Wallin, Erik; Ahlroth, Mikael

2008-09-15

The aim with the report was to put together a description of the current state of the sootblowing systems at Swedish recovery boilers, and to explain differences in cleanability and sootblowing efficiency. In chapter 4 a summary of new techniques and alternative soot blowing methods is found. The report is intended for persons working in the pulp industry. To facilitate the benchmarking the recovery boilers have been divided into two groups. Group A comprises recovery boilers which only have one stop per year and the remaining recovery boilers with more than one stop are classified into group B. The following conclusions, based on the recovery boiler design specifications, are of importance to achieve high boiler availability: Low furnace load; High recovery boiler, wide furnace bottom area; Modern air ports; Small or no correlation between cross pitch division in heat surfaces and cleanability could be seen. The expectation was to identify such a relation. However there are doubts on the correctness in reported data. The amount of chlorine and potassium is assumed to affect the cleanability for a few recovery boilers, but for the majority the amounts are low and most likely do not impact the operation. Because of the large impact of the recovery boilers design data (furnace area, load etc.) on the sootblowing, it has been hard to identify the relation cleanability contra sootblowing system. The relations that could be seen are: No distinction between normally designed nozzles and 'high efficiency' nozzles could be identified. The operational conditions for the different models differ a lot and the effect of nozzle type could not be distinguished. Only a minority of the soot blowing sequences are known from the study. In the recovery boilers with problematic areas improvements can be made in the soot blowing sequence. Four recovery boilers are using intelligent soot blowing of some kind. Two of these boilers have low availability and the other two have

MHD Boundary Layer Flow of Dilatant Fluid in a Divergent Channel with Suction or Blowing

International Nuclear Information System (INIS)

Bhattacharyya, Krishnendu; Layek, G. C.

2011-01-01

An analysis is carried out to study a steady magnetohydrodynamic (MHD) boundary layer flow of an electrically conducting incompressible power-law non-Newtonian fluid through a divergent channel. The channel walls are porous and subjected to either suction or blowing of equal magnitude of the same kind of fluid on both walls. The fluid is permeated by a magnetic field produced by electric current along the line of intersection of the channel walls. The governing partial differential equation is transformed into a self-similar nonlinear ordinary differential equation using similarity transformations. The possibility of boundary layer flow in a divergent channel is analyzed with the power-law fluid model. The analysis reveals that the boundary layer flow (without separation) is possible for the case of the dilatant fluid model subjected to suitable suction velocity applied through its porous walls, even in the absence of a magnetic field. Further, it is found that the boundary layer flow is possible even in the presence of blowing for a suitable value of the magnetic parameter. It is found that the velocity increases with increasing values of the power-law index for the case of dilatant fluid. The effects of suction/blowing and magnetic field on the velocity are shown graphically and discussed physically. (fundamental areas of phenomenology(including applications))

CpG island methylator phenotype-low (CIMP-low) colorectal cancer shows not only few methylated CIMP-high-specific CpG islands, but also low-level methylation at individual loci.

Science.gov (United States)

Kawasaki, Takako; Ohnishi, Mutsuko; Nosho, Katsuhiko; Suemoto, Yuko; Kirkner, Gregory J; Meyerhardt, Jeffrey A; Fuchs, Charles S; Ogino, Shuji

2008-03-01

The CpG island methylator phenotype (CIMP or CIMP-high) with widespread promoter methylation is a distinct phenotype in colorectal cancer. However, the concept of CIMP-low with less extensive CpG island methylation is still evolving. Our aim is to examine whether density of methylation in individual CpG islands was different between CIMP-low and CIMP-high tumors. Utilizing MethyLight technology and 889 population-based colorectal cancers, we quantified DNA methylation (methylation index, percentage of methylated reference) at 14 CpG islands, including 8 CIMP-high-specific loci (CACNA1G, CDKN2A (p16), CRABP1, IGF2, MLH1, NEUROG1, RUNX3 and SOCS1). Methylation positivity in each locus was defined as methylation index>4. Low-level methylation (methylation index>0, CIMP-high-specific locus was significantly more common in 340 CIMP-low tumors (1/8-5/8 methylation-positive loci) than 133 CIMP-high tumors (> or =6/8 methylation-positive loci) and 416 CIMP-0 tumors (0/8 methylation-positive loci) (PCIMP-high, low-level methylation, was not persistently more prevalent in CIMP-low tumors. In conclusion, compared to CIMP-high and CIMP-0 tumors, CIMP-low colorectal cancers show not only few methylated CIMP-high-specific CpG islands, but also more frequent low-level methylation at individual loci. Our data may provide supporting evidence for a difference in pathogenesis of DNA methylation between CIMP-low and CIMP-high tumors.

CMS: a web-based system for visualization and analysis of genome-wide methylation data of human cancers.

Science.gov (United States)

Gu, Fei; Doderer, Mark S; Huang, Yi-Wen; Roa, Juan C; Goodfellow, Paul J; Kizer, E Lynette; Huang, Tim H M; Chen, Yidong

2013-01-01

DNA methylation of promoter CpG islands is associated with gene suppression, and its unique genome-wide profiles have been linked to tumor progression. Coupled with high-throughput sequencing technologies, it can now efficiently determine genome-wide methylation profiles in cancer cells. Also, experimental and computational technologies make it possible to find the functional relationship between cancer-specific methylation patterns and their clinicopathological parameters. Cancer methylome system (CMS) is a web-based database application designed for the visualization, comparison and statistical analysis of human cancer-specific DNA methylation. Methylation intensities were obtained from MBDCap-sequencing, pre-processed and stored in the database. 191 patient samples (169 tumor and 22 normal specimen) and 41 breast cancer cell-lines are deposited in the database, comprising about 6.6 billion uniquely mapped sequence reads. This provides comprehensive and genome-wide epigenetic portraits of human breast cancer and endometrial cancer to date. Two views are proposed for users to better understand methylation structure at the genomic level or systemic methylation alteration at the gene level. In addition, a variety of annotation tracks are provided to cover genomic information. CMS includes important analytic functions for interpretation of methylation data, such as the detection of differentially methylated regions, statistical calculation of global methylation intensities, multiple gene sets of biologically significant categories, interactivity with UCSC via custom-track data. We also present examples of discoveries utilizing the framework. CMS provides visualization and analytic functions for cancer methylome datasets. A comprehensive collection of datasets, a variety of embedded analytic functions and extensive applications with biological and translational significance make this system powerful and unique in cancer methylation research. CMS is freely accessible

Numerical modelling of heat transfer in a cavity due to liquid jet impingement for liquid supported stretch blow moulding

Science.gov (United States)

Smyth, Trevor; Menary, Gary; Geron, Marco

2018-05-01

Impingement of a liquid jet in a polymer cavity has been modelled numerically in this study. Liquid supported stretch blow moulding is a nascent polymer forming process using liquid as the forming medium to produce plastic bottles. The process derives from the conventional stretch blow moulding process which uses compressed air to deform the preform. Heat transfer away from the preform greatly increases when a liquid instead of a gas is flowing over a solid; in the blow moulding process the temperature of the preform is tightly controlled to achieve optimum forming conditions. A model was developed with Computational Fluid Dynamics code ANSYS Fluent which allows the extent of heat transfer between the incoming liquid and the solid preform to be determined in the initial transient stage, where a liquid jet enters an air filled preform. With this data, an approximation of the extent of cooling through the preform wall can be determined.

Stable isotope labeling-mass spectrometry analysis of methyl- and pyridyloxobutyl-guanine adducts of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone in p53-derived DNA sequences.

Science.gov (United States)

Rajesh, Mathur; Wang, Gang; Jones, Roger; Tretyakova, Natalia

2005-02-15

The p53 tumor suppressor gene is a primary target in smoking-induced lung cancer. Interestingly, p53 mutations observed in lung tumors of smokers are concentrated at guanine bases within endogenously methylated (Me)CG dinucleotides, e.g., codons 157, 158, 245, 248, and 273 ((Me)C = 5-methylcytosine). One possible mechanism for the increased mutagenesis at these sites involves targeted binding of metabolically activated tobacco carcinogens to (Me)CG sequences. In the present work, a stable isotope labeling HPLC-ESI(+)-MS/MS approach was employed to analyze the formation of guanine lesions induced by the tobacco-specific lung carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) within DNA duplexes representing p53 mutational "hot spots" and surrounding sequences. Synthetic DNA duplexes containing p53 codons 153-159, 243-250, and 269-275 were prepared, where (Me)C was incorporated at all physiologically methylated CG sites. In each duplex, one of the guanine bases was replaced with [1,7,NH(2)-(15)N(3)-2-(13)C]-guanine, which served as an isotope "tag" to enable specific quantification of guanine lesions originating from that position. After incubation with NNK diazohydroxides, HPLC-ESI(+)-MS/MS analysis was used to determine the yields of NNK adducts at the isotopically labeled guanine and at unlabeled guanine bases elsewhere in the sequence. We found that N7-methyl-2'-deoxyguanosine and N7-[4-oxo-4-(3-pyridyl)but-1-yl]guanine lesions were overproduced at the 3'-guanine bases within polypurine runs, while the formation of O(6)-methyl-2'-deoxyguanosine and O(6)-[4-oxo-4-(3-pyridyl)but-1-yl]-2'-deoxyguanosine adducts was specifically preferred at the 3'-guanine base of 5'-GG and 5'-GGG sequences. In contrast, the presence of 5'-neighboring (Me)C inhibited O(6)-guanine adduct formation. These results indicate that the N7- and O(6)-guanine adducts of NNK are not overproduced at the endogenously methylated CG dinucleotides within the p53 tumor suppressor gene

Adsorption and wettability study of methyl ester sulphonate on precipitated asphaltene

International Nuclear Information System (INIS)

Okafor, H E; Gholami, R; Sukirman, Y

2016-01-01

Asphaltene precipitation from crude oil and its subsequent aggregation forms solid, which preferentially deposit on rock surfaces causing formation damage and wettability changes leading to loss of crude oil production. To resolve this problem, asphaltene inhibitor has been injected into the formation to prevent the precipitation of asphaltene. Asphaltene inhibitors that are usually employed are generally toxic and non-biodegradable. This paper presents a new environmentally friendly asphaltene inhibitor (methyl ester sulphonate), an anionic surfactant, which has excellent sorption on formation rock surfaces. Result from adsorption study validated by Langmuir and Freundlich models indicate a favourable adsorption. At low volumes injected, methyl ester sulphonate is capable of reverting oil-wet sandstone surface to water-wet surface. Biodegradability test profile shows that for concentrations of 100-5000ppm it is biodegradable by 65-80%. (paper)

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies.

Science.gov (United States)

Needhamsen, Maria; Ewing, Ewoud; Lund, Harald; Gomez-Cabrero, David; Harris, Robert Adam; Kular, Lara; Jagodic, Maja

2017-11-15

The advent of array-based genome-wide DNA methylation methods has enabled quantitative measurement of single CpG methylation status at relatively low cost and sample input. Whereas the use of Infinium Human Methylation BeadChips has shown great utility in clinical studies, no equivalent tool is available for rodent animal samples. We examined the feasibility of using the new Infinium MethylationEPIC BeadChip for studying DNA methylation in mouse. In silico, we identified 19,420 EPIC probes (referred as mEPIC probes), which align with a unique best alignment score to the bisulfite converted reference mouse genome mm10. Further annotation revealed that 85% of mEPIC probes overlapped with mm10.refSeq genes at different genomic features including promoters (TSS1500 and TSS200), 1st exons, 5'UTRs, 3'UTRs, CpG islands, shores, shelves, open seas and FANTOM5 enhancers. Hybridization of mouse samples to Infinium Human MethylationEPIC BeadChips showed successful measurement of mEPIC probes and reproducibility between inter-array biological replicates. Finally, we demonstrated the utility of mEPIC probes for data exploration such as hierarchical clustering. Given the absence of cost and labor convenient genome-wide technologies in the murine system, our findings show that the Infinium MethylationEPIC BeadChip platform is suitable for investigation of the mouse methylome. Furthermore, we provide the "mEPICmanifest" with genomic features, available to users of Infinium Human MethylationEPIC arrays for mouse samples.

Transgenerational epigenetics: Inheritance of global cytosine methylation and methylation-related epigenetic markers in the shrub Lavandula latifolia.

Science.gov (United States)

Herrera, Carlos M; Alonso, Conchita; Medrano, Mónica; Pérez, Ricardo; Bazaga, Pilar

2018-04-01

The ecological and evolutionary significance of natural epigenetic variation (i.e., not based on DNA sequence variants) variation will depend critically on whether epigenetic states are transmitted from parents to offspring, but little is known on epigenetic inheritance in nonmodel plants. We present a quantitative analysis of transgenerational transmission of global DNA cytosine methylation (= proportion of all genomic cytosines that are methylated) and individual epigenetic markers (= methylation status of anonymous MSAP markers) in the shrub Lavandula latifolia. Methods based on parent-offspring correlations and parental variance component estimation were applied to epigenetic features of field-growing plants ('maternal parents') and greenhouse-grown progenies. Transmission of genetic markers (AFLP) was also assessed for reference. Maternal parents differed significantly in global DNA cytosine methylation (range = 21.7-36.7%). Greenhouse-grown maternal families differed significantly in global methylation, and their differences were significantly related to maternal origin. Methylation-sensitive amplified polymorphism (MSAP) markers exhibited significant transgenerational transmission, as denoted by significant maternal variance component of marker scores in greenhouse families and significant mother-offspring correlations of marker scores. Although transmission-related measurements for global methylation and MSAP markers were quantitatively lower than those for AFLP markers taken as reference, this study has revealed extensive transgenerational transmission of genome-wide global cytosine methylation and anonymous epigenetic markers in L. latifolia. Similarity of results for global cytosine methylation and epigenetic markers lends robustness to this conclusion, and stresses the value of considering both types of information in epigenetic studies of nonmodel plants. © 2018 Botanical Society of America.

PSB beam longitudinal blow-up by phase modulation with the digital LLRF prototype system

CERN Document Server

Angoletta, M E; Butterworth, A; Findlay, A; Jaussi, M; Leinonen, P; Molendijk, J; Sanchez-Quesada, J

2014-01-01

The PSB will be upgraded to a new, Digital Low-Level RF (DLLRF) system in 2014 at the injectors’ restart after LS1. This DLLRF is an evolution of that successfully deployed in LEIR and comprises new hardware, software and implementation strategies. Machine development studies have been carried out in the PSB over recent years with the existing LEIR-style hardware installed in PSB ring four. These studies have allowed testing approaches and validating implementation strategies. This note focuses on a series of MDs carried out during the 2011 run where a new implementation of the longitudinal beam blow-up obtained by phase modulation was tested. Test results and effects on the beam are show for a CNGS-type beam. Finally, an overview is given of the final longitudinal blow-up implementation planned with the new hardware, which will be operationally deployed in 2014.

LMethyR-SVM: Predict Human Enhancers Using Low Methylated Regions based on Weighted Support Vector Machines.

Science.gov (United States)

Xu, Jingting; Hu, Hong; Dai, Yang

The identification of enhancers is a challenging task. Various types of epigenetic information including histone modification have been utilized in the construction of enhancer prediction models based on a diverse panel of machine learning schemes. However, DNA methylation profiles generated from the whole genome bisulfite sequencing (WGBS) have not been fully explored for their potential in enhancer prediction despite the fact that low methylated regions (LMRs) have been implied to be distal active regulatory regions. In this work, we propose a prediction framework, LMethyR-SVM, using LMRs identified from cell-type-specific WGBS DNA methylation profiles and a weighted support vector machine learning framework. In LMethyR-SVM, the set of cell-type-specific LMRs is further divided into three sets: reliable positive, like positive and likely negative, according to their resemblance to a small set of experimentally validated enhancers in the VISTA database based on an estimated non-parametric density distribution. Then, the prediction model is obtained by solving a weighted support vector machine. We demonstrate the performance of LMethyR-SVM by using the WGBS DNA methylation profiles derived from the human embryonic stem cell type (H1) and the fetal lung fibroblast cell type (IMR90). The predicted enhancers are highly conserved with a reasonable validation rate based on a set of commonly used positive markers including transcription factors, p300 binding and DNase-I hypersensitive sites. In addition, we show evidence that the large fraction of the LMethyR-SVM predicted enhancers are not predicted by ChromHMM in H1 cell type and they are more enriched for the FANTOM5 enhancers. Our work suggests that low methylated regions detected from the WGBS data are useful as complementary resources to histone modification marks in developing models for the prediction of cell-type-specific enhancers.

Clinical features and MRI findings of blow-out fracture

Energy Technology Data Exchange (ETDEWEB)

Yamanouchi, Yasuo; Yasuda, Takasumi; Kawamoto, Keiji [Kansai Medical Univ., Moriguchi, Osaka (Japan); Inagaki, Takayuki; Someda, Kuniyuki

1996-06-01

Precise anatomical understanding of orbital blow-out fracture lesions is necessary for the treatment of patients. Retrospectively, MRI findings were compared with the clinical features of pure type blow-out fractures and the efficacy of MRI in influencing a decision for surgical intervention was evaluated. Eighteen child (15 boys, 3 girls) cases were evaluated and compared with adult cases. The patients were classified into three categories (Fig.1) and two types (Fig.2) in accordance with the degree of protrusion of fat tissue. The degree of muscle protrusion also was divided into three categories (Fig. 3). Both muscle and fat tissue were protruding from the fracture site in 14 cases. Fat tissue protrusion alone was found in 3 cases. In contrast, no protrusion was seen in one case. The incarcerated type of fat prolapse was found in 40% of cases, while muscle tissue prolapse was found in 75% of patients. Marginal irregularity or swelling of muscle was observed in 11 patients. There was good correlation of ocular motor disturbance and MRI findings. Disturbance of eyeball movement was observed in all patients with either incarcerated fat tissue or marginal irregularity or swelling of muscle. In contrast, restriction of eyeball movement was rare in cases of no incarceration, even if the fracture was wide. Deformity or marginal irregularity of the ocular muscle demonstrated in MRI may suggest damage an adhesion to the muscle wall. When MRI reveals incarceration or severe prolapse of fat tissue, or deformity and marginal irregularity of the ocular muscle, surgical intervention should be considered. (author)

Clinical features and MRI findings of blow-out fracture

International Nuclear Information System (INIS)

Yamanouchi, Yasuo; Yasuda, Takasumi; Kawamoto, Keiji; Inagaki, Takayuki; Someda, Kuniyuki.

1996-01-01

Precise anatomical understanding of orbital blow-out fracture lesions is necessary for the treatment of patients. Retrospectively, MRI findings were compared with the clinical features of pure type blow-out fractures and the efficacy of MRI in influencing a decision for surgical intervention was evaluated. Eighteen child (15 boys, 3 girls) cases were evaluated and compared with adult cases. The patients were classified into three categories (Fig.1) and two types (Fig.2) in accordance with the degree of protrusion of fat tissue. The degree of muscle protrusion also was divided into three categories (Fig. 3). Both muscle and fat tissue were protruding from the fracture site in 14 cases. Fat tissue protrusion alone was found in 3 cases. In contrast, no protrusion was seen in one case. The incarcerated type of fat prolapse was found in 40% of cases, while muscle tissue prolapse was found in 75% of patients. Marginal irregularity or swelling of muscle was observed in 11 patients. There was good correlation of ocular motor disturbance and MRI findings. Disturbance of eyeball movement was observed in all patients with either incarcerated fat tissue or marginal irregularity or swelling of muscle. In contrast, restriction of eyeball movement was rare in cases of no incarceration, even if the fracture was wide. Deformity or marginal irregularity of the ocular muscle demonstrated in MRI may suggest damage an adhesion to the muscle wall. When MRI reveals incarceration or severe prolapse of fat tissue, or deformity and marginal irregularity of the ocular muscle, surgical intervention should be considered. (author)

Bernoulli Suction Effect on Soap Bubble Blowing?

Science.gov (United States)

Davidson, John; Ryu, Sangjin

2015-11-01

As a model system for thin-film bubble with two gas-liquid interfaces, we experimentally investigated the pinch-off of soap bubble blowing. Using the lab-built bubble blower and high-speed videography, we have found that the scaling law exponent of soap bubble pinch-off is 2/3, which is similar to that of soap film bridge. Because air flowed through the decreasing neck of soap film tube, we studied possible Bernoulli suction effect on soap bubble pinch-off by evaluating the Reynolds number of airflow. Image processing was utilized to calculate approximate volume of growing soap film tube and the volume flow rate of the airflow, and the Reynolds number was estimated to be 800-3200. This result suggests that soap bubbling may involve the Bernoulli suction effect.

Preparation and characterization of coating sodium trisilicate (Na2O.nSiO2) at calcium carbonate (CaCO3) for blowing agent in Mg alloy foam

Science.gov (United States)

Erryani, Aprilia; Lestari, Franciska Pramuji; Annur, Dhyah; Kartika, Ika

2018-05-01

The role of blowing agent in the manufacture of porous metal alloys is very important to produce the desired pore. The thermal stability and speed of foam formation have an effect on the resulting pore structure. In porous metal alloys, uniformity of size and pore deployment are the main determinants of the resulting alloys. The coating process of calcium carbonate (CaCO3) has been done using Sodium trisilicate solution by sol-gel method. Foaming agent was pretreated by coating SiO2 passive layer on the surface of CaCO3. This coating aims to produce a more stable blowing agent so that the foaming process can produce a more uniform pore size. The microstructure of the SiO2 passive was observed using Scanning Electron Microscope (SEM) equipped by Energy Dispersive X-Ray Spectrometer (EDS) mapping. The results showed coating CaCO3 using sodium trisilicate was successfully done creating a passive layer of SiO2 on the surface of CaCO3. By the coating process, the thermal stability of coated CaCO3 increased compared to uncoated CaCO3.

High throughput analysis of red wine and grape phenolics-adaptation and validation of methyl cellulose precipitable tannin assay and modified Somers color assay to a rapid 96 well plate format.

Science.gov (United States)

Mercurio, Meagan D; Dambergs, Robert G; Herderich, Markus J; Smith, Paul A

2007-06-13

The methyl cellulose precipitable (MCP) tannin assay and a modified version of the Somers and Evans color assay were adapted to high-throughput (HTP) analysis. To improve efficiency of the MCP tannin assay, a miniaturized 1 mL format and a HTP format using 96 well plates were developed. The Somers color assay was modified to allow the standardization of pH and ethanol concentrations of wine samples in a simple one-step dilution with a buffer solution, thus removing inconsistencies between wine matrices prior to analysis and allowing for its adaptation to a HTP format. Validation studies showed that all new formats were efficient, and results were reproducible and analogous to the original formats.

Effect of anionic surfactants on the process of Fenton degradation of methyl orange.

Science.gov (United States)

Yang, C W; Wang, D

2009-01-01

Fenton process has been shown to be very successful to remove dyes from water. However, the influence of other constituents in dyeing industry wastewater, such as Sodium Dodecyl Sulphate (SDS) surfactants, has not been investigated. In this study, the effect of SDS surfactant on the kinetics of Methyl Orange degradation undergoing Fenton process was investigated. Results show that Methyl Orange degradation rate decreased as SDS concentration increased, which was attributed to the consumption of hydroxyl radicals (OH) by surfactants and the formation of Methyl Orange-SDS complex. No evidence was found that the Methyl Orange degradation pathway was affected by the presence of SDS. The kinetics modelling indicates the reaction was the first-order reaction to Methyl Orange.

Lgr5 Methylation in Cancer Stem Cell Differentiation and Prognosis-Prediction in Colorectal Cancer.

Directory of Open Access Journals (Sweden)

Shasha Su

Full Text Available Leucine-rich-repeat-containing G-protein-coupled receptor 5 (lgr5 is a candidate marker for colorectal cancer stem cells (CSC. In the current study, we investigated the methylation status within thelgr5 promoter and evaluated its relationship with CSC differentiation, prognosis for colorectal cancer, and its clinicopathological features.The methylation status within Lgr5 promoter was detected with a methylation-specific PCR in six colorectal cancer cell lines as well as 169 primary colorectal tumor tissues. Differentiation of CSC was examined with immunofluorescence and immunocytochemistry. Down-regulation of lgr5 was achieved with gene-specific siRNA. The associations between lgr5 methylation and the clinicopathological features as well as survival of patients were analyzed with statistical methods.The lgr5 promoter was methylated to different degrees for the six colorectal cell lines examined, with complete methylation observed in HCT116 cells in which the lgr5 expression was partially recovered following DAC treatment. The stem-cell sphere formation from HCT116 cells was accompanied by increasing methylation within the lgr5 promoter and decreasing expression of lgr5. Knocking down lgr5 by siRNA also led to stem-cell spheres formation. Among primary colorectal tumors, 40% (67/169 were positive for lgr5 methylation, while none of the normal colon tissues were positive for lgr5 methylation. Furthermore, lgr5 methylation significantly associated with higher tumor grade, and negative distant metastasis (p < 0.05, as well as better prognosis (p = 0.001 in patients with colorectal cancer.Our data suggests that lgr5 methylation, through the regulation of lgr5 expression and colorectal CSC differentiation, may constitute a novel prognostic marker for colorectal cancer patients.

How does methylation suppress the electron-induced decomposition of 1-methyl-nitroimidazoles?

Science.gov (United States)

Kossoski, F.; Varella, M. T. do N.

2017-10-01

The efficient decomposition of nitroimidazoles (NIs) by low energy electrons is believed to underlie their radiosensitizing properties. Recent dissociative electron attachment (DEA) measurements showed that methylation at the N1 site unexpectedly suppresses the electron-induced reactions in 4(5)-NI. We report theoretical results that provide a clear interpretation of that astounding finding. Around 1.5 eV, DEA reactions into several fragments are initiated by a π* resonance, not considered in previous studies. The autoionization lifetime of this anion state, which limits the predissociation dynamics, is considerably shorter in the methylated species, thereby suppressing the DEA signals. On the other hand, the lifetime of the π* resonance located around 3 eV is less affected by methylation, which explains why DEA is still observed at these energies. Our results demonstrate how even a simple methylation can significantly modify the probabilities for DEA reactions, which may be significant for NI-based cancer therapy.

Electronic transport in methylated fragments of DNA

Energy Technology Data Exchange (ETDEWEB)

Almeida, M. L. de; Oliveira, J. I. N.; Lima Neto, J. X.; Gomes, C. E. M.; Fulco, U. L., E-mail: umbertofulco@gmail.com; Albuquerque, E. L. [Departamento de Biofísica e Farmacologia, Universidade Federal do Rio Grande do Norte, 59072-970 Natal-RN (Brazil); Freire, V. N. [Departamento de Física, Universidade Federal do Ceará, 60455-760 Fortaleza, CE (Brazil); Caetano, E. W. S. [Instituto Federal de Educação, Ciência e Tecnologia do Ceará, 60040-531 Fortaleza, CE (Brazil); Moura, F. A. B. F. de; Lyra, M. L. [Instituto de Física, Universidade Federal de Alagoas, 57072-900 Maceió-AL (Brazil)

2015-11-16

We investigate the electronic transport properties of methylated deoxyribonucleic-acid (DNA) strands, a biological system in which methyl groups are added to DNA (a major epigenetic modification in gene expression), sandwiched between two metallic platinum electrodes. Our theoretical simulations apply an effective Hamiltonian based on a tight-binding model to obtain current-voltage curves related to the non-methylated/methylated DNA strands. The results suggest potential applications in the development of novel biosensors for molecular diagnostics.

Electronic transport in methylated fragments of DNA

International Nuclear Information System (INIS)

Almeida, M. L. de; Oliveira, J. I. N.; Lima Neto, J. X.; Gomes, C. E. M.; Fulco, U. L.; Albuquerque, E. L.; Freire, V. N.; Caetano, E. W. S.; Moura, F. A. B. F. de; Lyra, M. L.

2015-01-01

We investigate the electronic transport properties of methylated deoxyribonucleic-acid (DNA) strands, a biological system in which methyl groups are added to DNA (a major epigenetic modification in gene expression), sandwiched between two metallic platinum electrodes. Our theoretical simulations apply an effective Hamiltonian based on a tight-binding model to obtain current-voltage curves related to the non-methylated/methylated DNA strands. The results suggest potential applications in the development of novel biosensors for molecular diagnostics

Aqueous-phase oxidation of green leaf volatiles by hydroxyl radical as a source of SOA: Product identification from methyl jasmonate and methyl salicylate oxidation

Science.gov (United States)

Hansel, Amie K.; Ehrenhauser, Franz S.; Richards-Henderson, Nicole K.; Anastasio, Cort; Valsaraj, Kalliat T.

2015-02-01

Green leaf volatiles (GLVs) are a group of biogenic volatile organic compounds (BVOCs) released into the atmosphere by vegetation. BVOCs produce secondary organic aerosol (SOA) via gas-phase reactions, but little is known of their aqueous-phase oxidation as a source of SOA. GLVs can partition into atmospheric water phases, e.g., fog, mist, dew or rain, and be oxidized by hydroxyl radicals (˙OH). These reactions in the liquid phase also lead to products that have higher molecular weights, increased polarity, and lower vapor pressures, ultimately forming SOA after evaporation of the droplet. To examine this process, we investigated the aqueous, ˙OH-mediated oxidation of methyl jasmonate (MeJa) and methyl salicylate (MeSa), two GLVs that produce aqueous-phase SOA. High performance liquid chromatography/electrospray ionization mass spectrometry (HPLC-ESI-MS) was used to monitor product formation. The oxidation products identified exhibit higher molecular mass than their parent GLV due to either dimerization or the addition of oxygen and hydroxyl functional groups. The proposed structures of potential products are based on mechanistic considerations combined with the HPLC/ESI-MS data. Based on the structures, the vapor pressure and the Henry's law constant were estimated with multiple methods (SPARC, SIMPOL, MPBPVP, Bond and Group Estimations). The estimated vapor pressures of the products identified are significantly (up to 7 orders of magnitude) lower than those of the associated parent compounds, and therefore, the GLV oxidation products may remain as SOA after evaporation of the water droplet. The contribution of the identified oxidation products to SOA formation is estimated based on measured HPLC-ESI/MS responses relative to previous aqueous SOA mass yield measurements.

Improvement of blow down model for LEAP code

International Nuclear Information System (INIS)

Itooka, Satoshi; Fujimata, Kazuhiro

2003-03-01

In Japan Nuclear Cycle Development Institute, the improvement of analysis method for overheating tube rapture was studied for the accident of sodium-water reactions in the steam generator of a fast breeder reactor and the evaluation of heat transfer condition in the tube were carried out based on study of critical heat flux (CHF) and post-CHF heat transfer equation in Light Water Reactors. In this study, the improvement of blow down model for the LEAP code was carried out taking into consideration the above-mentioned evaluation of heat transfer condition. Improvements of the LEAP code were following items. Calculations and verification were performed with the improved LEAP code in order to confirm the code functions. The addition of critical heat flux (CHF) by the formula of Katto and the formula of Tong. The addition of post-CHF heat transfer equation by the formula of Condie-BengstonIV and the formula of Groeneveld 5.9. The physical properties of the water and steam are expanded to the critical conditions of the water. The expansion of the total number of section and the improvement of the input form. The addition of the function to control the valve setting by the PID control model. (author)

Modeling blowing snow accumulation downwind of an obstruction: The Ohara Eulerian particle distribution equation

Science.gov (United States)

Kinar, N. J.

2017-05-01

An equation was proposed to model the height of blowing snow accumulation downwind of an obstacle such as vegetation, a snow fence, a building, or a topographic feature. The equation does not require aerodynamic flow condition parameters such as wind speed, allowing for the spatial distribution of snow to be determined at locations where meteorological data is not available. However, snow particle diffusion, drift, and erosion coefficients must be estimated for application of the equation. These coefficients can be used to provide insight into the relative magnitude of blowing snow processes at a field location. Further research is required to determine efficient methods for coefficient estimation. The equation could be used with other models of wind-transported snow to predict snow accumulation downwind of an obstacle without the need for wind speed adjustments or correction equations. Applications for this equation include the design of snow fences, and the use of this equation with other hydrological models to predict snow distribution, climate change, drought, flooding, and avalanches.

DNA methylation levels analysis in four tissues of sea cucumber Apostichopus japonicus based on fluorescence-labeled methylation-sensitive amplified polymorphism (F-MSAP) during aestivation.

Science.gov (United States)

Zhao, Ye; Chen, Muyan; Storey, Kenneth B; Sun, Lina; Yang, Hongsheng

2015-03-01

DNA methylation plays an important role in regulating transcriptional change in response to environmental stimuli. In the present study, DNA methylation levels of tissues of the sea cucumber Apostichopus japonicus were analyzed by the fluorescence-labeled methylation-sensitive amplified polymorphism (F-MSAP) technique over three stages of the aestivation cycle. Overall, a total of 26,963 fragments were amplified including 9112 methylated fragments among four sea cucumber tissues using 18 pairs of selective primers. Results indicated an average DNA methylation level of 33.79% for A. japonicus. The incidence of DNA methylation was different across tissue types in the non-aestivation stage: intestine (30.16%), respiratory tree (27.61%), muscle (27.94%) and body wall (56.25%). Our results show that hypermethylation accompanied deep-aestivation in A. japonicus, which suggests that DNA methylation may have an important role in regulating global transcriptional suppression during aestivation. Further analysis indicated that the main DNA modification sites were focused on intestine and respiratory tree tissues and that full-methylation but not hemi-methylation levels exhibited significant increases in the deep-aestivation stage. Copyright © 2014 Elsevier Inc. All rights reserved.

DNA Methylation Biomarkers: Cancer and Beyond

Directory of Open Access Journals (Sweden)

Thomas Mikeska

2014-09-01

Full Text Available Biomarkers are naturally-occurring characteristics by which a particular pathological process or disease can be identified or monitored. They can reflect past environmental exposures, predict disease onset or course, or determine a patient’s response to therapy. Epigenetic changes are such characteristics, with most epigenetic biomarkers discovered to date based on the epigenetic mark of DNA methylation. Many tissue types are suitable for the discovery of DNA methylation biomarkers including cell-based samples such as blood and tumor material and cell-free DNA samples such as plasma. DNA methylation biomarkers with diagnostic, prognostic and predictive power are already in clinical trials or in a clinical setting for cancer. Outside cancer, strong evidence that complex disease originates in early life is opening up exciting new avenues for the detection of DNA methylation biomarkers for adverse early life environment and for estimation of future disease risk. However, there are a number of limitations to overcome before such biomarkers reach the clinic. Nevertheless, DNA methylation biomarkers have great potential to contribute to personalized medicine throughout life. We review the current state of play for DNA methylation biomarkers, discuss the barriers that must be crossed on the way to implementation in a clinical setting, and predict their future use for human disease.

Blow/trauma to the chest and sudden cardiac death: Commotio cordis and contusio cordis are leading causes.

Science.gov (United States)

Krexi, Lydia; Sheppard, Mary N

2018-01-01

Background In forensic practice, a blow to the chest can lead to sudden cardiac death (SCD). Commotio cordis and contusio cordis are leading causes. Methods From a database of 4678 patients who suffered from SCD, we found three patients with commotio cordis and two patients with contusio cordis. All the patients were examined macroscopically and microscopically and had negative toxicology screen. Results The three patients who died due to commotio cordis were young males (16, 23 and 38 years old). The circumstances of death were: a blow to the chest by a football, by a friend during a party and during an assault. The hearts were completely normal at autopsy. The two patients who had contusio cordis were older males (42 and 63 years old). Both patients died during traffic accidents. At autopsy, one had significant contusion over the left ventricle, and the second had contusion over the right ventricle. Conclusion This study indicates that a blow to the chest is very important to document in the circumstances of death, and a detailed history is vital. It raises the left ventricular intra-cavitary pressure, leading to commotio cordis with immediate death with a normal heart. Blunt chest trauma can cause direct myocardial lesions, with acute changes leading to contusio cordis.

Methylation profiling identified novel differentially methylated markers including OPCML and FLRT2 in prostate cancer.

Science.gov (United States)

Wu, Yu; Davison, Jerry; Qu, Xiaoyu; Morrissey, Colm; Storer, Barry; Brown, Lisha; Vessella, Robert; Nelson, Peter; Fang, Min

2016-04-02

To develop new methods to distinguish indolent from aggressive prostate cancers (PCa), we utilized comprehensive high-throughput array-based relative methylation (CHARM) assay to identify differentially methylated regions (DMRs) throughout the genome, including both CpG island (CGI) and non-CGI regions in PCa patients based on Gleason grade. Initially, 26 samples, including 8 each of low [Gleason score (GS) 6] and high (GS ≥7) grade PCa samples and 10 matched normal prostate tissues, were analyzed as a discovery cohort. We identified 3,567 DMRs between normal and cancer tissues, and 913 DMRs distinguishing low from high-grade cancers. Most of these DMRs were located at CGI shores. The top 5 candidate DMRs from the low vs. high Gleason comparison, including OPCML, ELAVL2, EXT1, IRX5, and FLRT2, were validated by pyrosequencing using the discovery cohort. OPCML and FLRT2 were further validated in an independent cohort consisting of 20 low-Gleason and 33 high-Gleason tissues. We then compared patients with biochemical recurrence (n=70) vs. those without (n=86) in a third cohort, and they showed no difference in methylation at these DMR loci. When GS 3+4 cases and GS 4+3 cases were compared, OPCML-DMR methylation showed a trend of lower methylation in the recurrence group (n=30) than in the no-recurrence (n=52) group. We conclude that whole-genome methylation profiling with CHARM revealed distinct patterns of differential DNA methylation between normal prostate and PCa tissues, as well as between different risk groups of PCa as defined by Gleason scores. A panel of selected DMRs may serve as novel surrogate biomarkers for Gleason score in PCa.

Microarray-Based Analysis of Methylation of 1st Trimester Trisomic Placentas from Down Syndrome, Edwards Syndrome and Patau Syndrome

DEFF Research Database (Denmark)

Hatt, Lotte; Aagaard, Mads M; Bach, Cathrine

2016-01-01

Methylation-based non-invasive prenatal testing of fetal aneuploidies is an alternative method that could possibly improve fetal aneuploidy diagnosis, especially for trisomy 13 (T13) and trisomy 18(T18). Our aim was to study the methylation landscape in placenta DNA from trisomy 13, 18 and 21 pre...

Whole-genome methylation caller designed for methyl- DNA ...

African Journals Online (AJOL)

etchie

2013-02-20

Feb 20, 2013 ... Our method uses a single-CpG-resolution, whole-genome methylation ... Key words: Methyl-DNA immunoprecipitation, next-generation sequencing, ...... methylation is prevalent in embryonic stem cells andmaybe mediated.

Biodegradation of triclosan and formation of methyl-triclosan in activated sludge under aerobic conditions

DEFF Research Database (Denmark)

Chen, Xijuan; Nielsen, Jeppe Lund; Furgal, Karolina

2011-01-01

of triclosan- methyl was investigated in activated sludge from a standard activated sludge WWTP equipped with enhanced biological phosphorus removal. The removal was found to occur mainly under aerobic conditions while under anoxic (nitrate reducing) and anaerobic conditions rather low removal rates were...... determined. In a laboratory-scale activated sludge reactor 75% of the triclosan was removed under aerobic conditions within 150 h, while no removal was observed under anaerobic or anoxic conditions. One percent of the triclosan was converted to triclosan-methyl under aerobic conditions, less under anoxic...

Effect of epoxidation on 30% poly(methyl methacrylate)-grafted natural rubber polymer electrolytes

Energy Technology Data Exchange (ETDEWEB)

Nazir, Khuzaimah; Aziz, Ahmad Fairoz [Faculty of Applied Sciences, Universiti Teknologi MARA, 40450 Shah Alam, Selangor (Malaysia); Adam, Nurul Ilham [Faculty of Applied Sciences, Universiti Teknologi MARA, KampusTapah, 35400 Tapah Road, Tapah, Perak (Malaysia); Yahya, Muhd Zu Azhan [Faculty of Defence Sciences and Technology, Universiti Pertahanan Nasional Malaysia, Kem Sungai Besi, 57000 Kuala Lumpur (Malaysia); Ali, Ab Malik Marwan [Institute of Science, Universiti Teknologi MARA, 40450 Shah Alam, Selangor (Malaysia)

2015-08-28

Epoxidized 30% poly(methyl methacrylate)-grafted natural rubber (EMG 30) as a polymer host in solid polymer electrolytes (SPEs) has been investigated. EMG30 was synthesized via performicepoxidation method onto 30% poly(methyl methacrylate)-grafted natural rubber (MG30) and the formations of epoxy group were discussed. The EMG30 were characterized by proton nuclear magnetic resonance ({sup 1}HNMR) to investigate their chemical structure and differential scanning calorimeter to determine their crystallinity. A new peak in {sup 1}HNMR spectra (2.71 ppm) confirmed the appearance of epoxy group. SPE based on EMG30 doped with 40 wt% LiCF{sub 3}SO{sub 3} show the highest conductivity. The complexation between EMG30 and LiCF{sub 3}SO{sub 3} were confirmed by attenuated total reflection Fourier transform infrared (ATR-FTIR)

Effect of epoxidation on 30% poly(methyl methacrylate)-grafted natural rubber polymer electrolytes

International Nuclear Information System (INIS)

Nazir, Khuzaimah; Aziz, Ahmad Fairoz; Adam, Nurul Ilham; Yahya, Muhd Zu Azhan; Ali, Ab Malik Marwan

2015-01-01

Epoxidized 30% poly(methyl methacrylate)-grafted natural rubber (EMG 30) as a polymer host in solid polymer electrolytes (SPEs) has been investigated. EMG30 was synthesized via performicepoxidation method onto 30% poly(methyl methacrylate)-grafted natural rubber (MG30) and the formations of epoxy group were discussed. The EMG30 were characterized by proton nuclear magnetic resonance ( 1 HNMR) to investigate their chemical structure and differential scanning calorimeter to determine their crystallinity. A new peak in 1 HNMR spectra (2.71 ppm) confirmed the appearance of epoxy group. SPE based on EMG30 doped with 40 wt% LiCF 3 SO 3 show the highest conductivity. The complexation between EMG30 and LiCF 3 SO 3 were confirmed by attenuated total reflection Fourier transform infrared (ATR-FTIR)

Effect of epoxidation on 30% poly(methyl methacrylate)-grafted natural rubber polymer electrolytes

Science.gov (United States)

Nazir, Khuzaimah; Aziz, Ahmad Fairoz; Adam, Nurul Ilham; Yahya, Muhd Zu Azhan; Ali, Ab Malik Marwan

2015-08-01

Epoxidized 30% poly(methyl methacrylate)-grafted natural rubber (EMG 30) as a polymer host in solid polymer electrolytes (SPEs) has been investigated. EMG30 was synthesized via performicepoxidation method onto 30% poly(methyl methacrylate)-grafted natural rubber (MG30) and the formations of epoxy group were discussed. The EMG30 were characterized by proton nuclear magnetic resonance (1HNMR) to investigate their chemical structure and differential scanning calorimeter to determine their crystallinity. A new peak in 1HNMR spectra (2.71 ppm) confirmed the appearance of epoxy group. SPE based on EMG30 doped with 40 wt% LiCF3SO3 show the highest conductivity. The complexation between EMG30 and LiCF3SO3 were confirmed by attenuated total reflection Fourier transform infrared (ATR-FTIR).

MIRA: An R package for DNA methylation-based inference of regulatory activity.

Science.gov (United States)

Lawson, John T; Tomazou, Eleni M; Bock, Christoph; Sheffield, Nathan C

2018-03-01

DNA methylation contains information about the regulatory state of the cell. MIRA aggregates genome-scale DNA methylation data into a DNA methylation profile for independent region sets with shared biological annotation. Using this profile, MIRA infers and scores the collective regulatory activity for each region set. MIRA facilitates regulatory analysis in situations where classical regulatory assays would be difficult and allows public sources of open chromatin and protein binding regions to be leveraged for novel insight into the regulatory state of DNA methylation datasets. R package available on Bioconductor: http://bioconductor.org/packages/release/bioc/html/MIRA.html. nsheffield@virginia.edu.

Avocado and olive oil methyl esters

International Nuclear Information System (INIS)

Knothe, Gerhard

2013-01-01

Biodiesel, the mono-alkyl esters of vegetable oils, animal fats or other triacylglycerol-containing materials and an alternative to conventional petroleum-based diesel fuel, has been derived from a variety of feedstocks. Numerous feedstocks have been investigated as potential biodiesel sources, including commodity oils, however, the methyl esters of avocado and olive oil would likely be suitable as biodiesel fuel. In order to expand the database and comprehensive evaluation of the properties of vegetable oil esters, in this work the fuel-related properties of avocado and olive oil methyl esters, which exhibit similar fatty acid profiles including high oleic acid content, are determined. The cetane numbers of avocado oil methyl esters and olive oil methyl esters are relatively high, determined as 59.2 and 62.5, respectively, due to their elevated content of methyl oleate. Other properties are well within the ranges specified in biodiesel standards. The cloud points of both esters are slightly above 0 °C due to their content of saturated esters, especially methyl palmitate. Overall, avocado and olive oil yield methyl esters with fuel properties comparable to methyl esters from other commodity vegetable oils. The 1 H and 13 C NMR spectra of avocado and olive oil methyl esters are reported. -- Highlights: • Methyl esters of avocado and olive oil meet biodiesel fuel standards. • Provides comparison for methyl esters of other vegetable oils with high oleic content. • Discusses and compares present results with prior literature

Methylation-Sensitive High Resolution Melting (MS-HRM).

Science.gov (United States)

Hussmann, Dianna; Hansen, Lise Lotte

2018-01-01

Methylation-Sensitive High Resolution Melting (MS-HRM) is an in-tube, PCR-based method to detect methylation levels at specific loci of interest. A unique primer design facilitates a high sensitivity of the assays enabling detection of down to 0.1-1% methylated alleles in an unmethylated background.Primers for MS-HRM assays are designed to be complementary to the methylated allele, and a specific annealing temperature enables these primers to anneal both to the methylated and the unmethylated alleles thereby increasing the sensitivity of the assays. Bisulfite treatment of the DNA prior to performing MS-HRM ensures a different base composition between methylated and unmethylated DNA, which is used to separate the resulting amplicons by high resolution melting.The high sensitivity of MS-HRM has proven useful for detecting cancer biomarkers in a noninvasive manner in urine from bladder cancer patients, in stool from colorectal cancer patients, and in buccal mucosa from breast cancer patients. MS-HRM is a fast method to diagnose imprinted diseases and to clinically validate results from whole-epigenome studies. The ability to detect few copies of methylated DNA makes MS-HRM a key player in the quest for establishing links between environmental exposure, epigenetic changes, and disease.

Solvated copper(I) hexafluorosilicate π-complexes based on [Cu2(amtd)2]2+ (amtd = 2-allylamino-5-methyl-1,3,4-thiadiazole) dimer

OpenAIRE

Goreshnik, E.A.; Veryasov, G.; Morozov, Dmitry; Slyvka, Yu.; Ardan, B.; Mys'kiv, M.G.

2016-01-01

[Cu2(amdt)2]SiF6·C6H6 and [Cu2(amdt)2(H2O)2]SiF6·CH3CN·2H2O (amdt = 2-allylamino-5- methyl-1,3,4-thiadiazole) were obtained by alternating-current electrochemical synthesis, starting from water–acetonitrile–benzene mixtures containing 2-allylamino-5-methyl-1,3,4- thiadiazole and CuSiF6·4H2O. The electrochemical reduction of the saturated copper hexafluorosilicate water solution beneath the neatly poured layer of acetonitrile-benzene amdt solution resulted in the formation of cr...

Methylation of deoxycytidine incorporated by excision-repair synthesis of DNA

International Nuclear Information System (INIS)

Kastan, M.B.; Gowans, B.J.; Lieberman, M.W.

1982-01-01

Methylation of deoxycytidine incorporated by DNA excision-repair was studied in human diploid fibroblasts following damage with ultraviolet radiation, N-methyl-N-nitrosourea, or N-acetoxy-2-acetylaminofluorene. In confluent, nondividing cells, methylation in repair patches induced by all three agents is slow and incomplete. Whereas after DNA replication in logarithmic-phase cultures a steady state level of 3.4% 5-methylcytosine is reached in less than 2 hr after cells are labeled with 6- 3H-deoxycytidine, following ultraviolet-stimulated repair synthesis in confluent cells it takes about 3 days to reach a level of approximately 2.0% 5-methylcytosine in the repair patch. In cells from cultures in logarithmic-phase growth, 5-methylcytosine formation in ultraviolet-induced repair patches occurs faster and to a greater extent, reaching a level of approximately 2.7% in 10-20 hr. Preexisting hypomethylated repair patches in confluent cells are methylated further when the cells are stimulated to divide; however, the repair patch may still not be fully methylated before cell division occurs. Thus DNA damage and repair may lead to heritable loss of methylation at some sites

Gene expression during blow fly development: improving the precision of age estimates in forensic entomology.

Science.gov (United States)

Tarone, Aaron M; Foran, David R

2011-01-01

Forensic entomologists use size and developmental stage to estimate blow fly age, and from those, a postmortem interval. Since such estimates are generally accurate but often lack precision, particularly in the older developmental stages, alternative aging methods would be advantageous. Presented here is a means of incorporating developmentally regulated gene expression levels into traditional stage and size data, with a goal of more precisely estimating developmental age of immature Lucilia sericata. Generalized additive models of development showed improved statistical support compared to models that did not include gene expression data, resulting in an increase in estimate precision, especially for postfeeding third instars and pupae. The models were then used to make blind estimates of development for 86 immature L. sericata raised on rat carcasses. Overall, inclusion of gene expression data resulted in increased precision in aging blow flies. © 2010 American Academy of Forensic Sciences.

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

DEFF Research Database (Denmark)

Li, Xin; Zhu, Jingde; Hu, Fengyi

2012-01-01

DNA methylation plays important biological roles in plants and animals. To examine the rice genomic methylation landscape and assess its functional significance, we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza sativa ssp. japonica, indica and their wild rela...

A novel sterane, 27-nor-24-methyl-5 alpha-cholestane, in sediments

NARCIS (Netherlands)

Sinninghe Damsté, J.S.; Schouten, S.; Schoell, M.; Leeuw, J.W. de

1994-01-01

A novel sterane, 27-nor-24-methyl-5-cholestane, has been identified in sedimentary hydrocarbon mixtures by coinjection with an authentic standard. The C27 sterane occurs in silica-rich sediments from the Monterey Formation, USA, the Onnagawa Formation, Japan, and the Menilite Shale, Poland, and in

Identification of endometrial cancer methylation features using combined methylation analysis methods.

Directory of Open Access Journals (Sweden)

Michael P Trimarchi

Full Text Available DNA methylation is a stable epigenetic mark that is frequently altered in tumors. DNA methylation features are attractive biomarkers for disease states given the stability of DNA methylation in living cells and in biologic specimens typically available for analysis. Widespread accumulation of methylation in regulatory elements in some cancers (specifically the CpG island methylator phenotype, CIMP can play an important role in tumorigenesis. High resolution assessment of CIMP for the entire genome, however, remains cost prohibitive and requires quantities of DNA not available for many tissue samples of interest. Genome-wide scans of methylation have been undertaken for large numbers of tumors, and higher resolution analyses for a limited number of cancer specimens. Methods for analyzing such large datasets and integrating findings from different studies continue to evolve. An approach for comparison of findings from a genome-wide assessment of the methylated component of tumor DNA and more widely applied methylation scans was developed.Methylomes for 76 primary endometrial cancer and 12 normal endometrial samples were generated using methylated fragment capture and second generation sequencing, MethylCap-seq. Publically available Infinium HumanMethylation 450 data from The Cancer Genome Atlas (TCGA were compared to MethylCap-seq data.Analysis of methylation in promoter CpG islands (CGIs identified a subset of tumors with a methylator phenotype. We used a two-stage approach to develop a 13-region methylation signature associated with a "hypermethylator state." High level methylation for the 13-region methylation signatures was associated with mismatch repair deficiency, high mutation rate, and low somatic copy number alteration in the TCGA test set. In addition, the signature devised showed good agreement with previously described methylation clusters devised by TCGA.We identified a methylation signature for a "hypermethylator phenotype" in

Synthesis of DL-adrenaline (methyl C{sup 14}) (1961); Synthese de la DL-adrenaline (methyle {sup 14}C) (1961)

Energy Technology Data Exchange (ETDEWEB)

Pichat, L; Audinot, M [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

1961-07-01

The sodium derivative of 5-3-4 dibenzyl oxyphenyl 2-oxazolidinone reacted with methyl iodide {sup 14}C, in stoichiometric quantity, gives rise to the corresponding N-methyl {sup 14}C derivative. The oxazolidinone ring is opened by concentrated hydrochloric acid and the benzyl groups removed by catalytic hydrogenolysis. Adrenaline methyl {sup 14}C is then purified on Dowex 50 X-12 exchange resin. Overall-yield is 45 per cent based upon methyl iodide {sup 14}C. (author) [French] Le derive sode de la (dibenzyloxy-3-4-phenyl)-5 oxazolidinone-2 traite par l'iodure de methyle {sup 14}C, en proportion stoechiometrique, fournit le derive N-methyle {sup 14}C correspondant. Apres ouverture du cycle oxazolidinone par HCL concentre et debenzylation par hydrogenation catalytique, on purifie l'adrenaline (methyle {sup 14}C) par chromatographie sur resine echangeuse Dowex 50 X-12. Le rendement est de 45 pour cent par rapport a l'iodure de methyle {sup 14}C. (auteurs)

Synthesis of DL-adrenaline (methyl C{sup 14}) (1961); Synthese de la DL-adrenaline (methyle {sup 14}C) (1961)

Energy Technology Data Exchange (ETDEWEB)

Pichat, L.; Audinot, M. [Commissariat a l' Energie Atomique, Saclay (France). Centre d' Etudes Nucleaires

1961-07-01

The sodium derivative of 5-3-4 dibenzyl oxyphenyl 2-oxazolidinone reacted with methyl iodide {sup 14}C, in stoichiometric quantity, gives rise to the corresponding N-methyl {sup 14}C derivative. The oxazolidinone ring is opened by concentrated hydrochloric acid and the benzyl groups removed by catalytic hydrogenolysis. Adrenaline methyl {sup 14}C is then purified on Dowex 50 X-12 exchange resin. Overall-yield is 45 per cent based upon methyl iodide {sup 14}C. (author) [French] Le derive sode de la (dibenzyloxy-3-4-phenyl)-5 oxazolidinone-2 traite par l'iodure de methyle {sup 14}C, en proportion stoechiometrique, fournit le derive N-methyle {sup 14}C correspondant. Apres ouverture du cycle oxazolidinone par HCL concentre et debenzylation par hydrogenation catalytique, on purifie l'adrenaline (methyle {sup 14}C) par chromatographie sur resine echangeuse Dowex 50 X-12. Le rendement est de 45 pour cent par rapport a l'iodure de methyle {sup 14}C. (auteurs)

Evaluation of markers for CpG island methylator phenotype (CIMP) in colorectal cancer by a large population-based sample.

Science.gov (United States)

Ogino, Shuji; Kawasaki, Takako; Kirkner, Gregory J; Kraft, Peter; Loda, Massimo; Fuchs, Charles S

2007-07-01

The CpG island methylator phenotype (CIMP or CIMP-high) with extensive promoter methylation is a distinct phenotype in colorectal cancer. However, a choice of markers for CIMP has been controversial. A recent extensive investigation has selected five methylation markers (CACNA1G, IGF2, NEUROG1, RUNX3, and SOCS1) as surrogate markers for epigenomic aberrations in tumor. The use of these markers as a CIMP-specific panel needs to be validated by an independent, large dataset. Using MethyLight assays on 920 colorectal cancers from two large prospective cohort studies, we quantified DNA methylation in eight CIMP-specific markers [the above five plus CDKN2A (p16), CRABP1, and MLH1]. A CIMP-high cutoff was set at > or = 6/8 or > or = 5/8 methylated promoters, based on tumor distribution and BRAF/KRAS mutation frequencies. All but two very specific markers [MLH1 (98% specific) and SOCS1 (93% specific)] demonstrated > or = 85% sensitivity and > or = 80% specificity, indicating overall good concordance in methylation patterns and good performance of these markers. Based on sensitivity, specificity, and false positives and negatives, the eight markers were ranked in order as: RUNX3, CACNA1G, IGF2, MLH1, NEUROG1, CRABP1, SOCS1, and CDKN2A. In conclusion, a panel of markers including at least RUNX3, CACNA1G, IGF2, and MLH1 can serve as a sensitive and specific marker panel for CIMP-high.

Formation of silicon carbide by laser ablation in graphene oxide-N-methyl-2-pyrrolidone suspension on silicon surface

Science.gov (United States)

Jaleh, Babak; Ghasemi, Samaneh; Torkamany, Mohammad Javad; Salehzadeh, Sadegh; Maleki, Farahnaz

2018-01-01

Laser ablation of a silicon wafer in graphene oxide-N-methyl-2-pyrrolidone (GO-NMP) suspension was carried out with a pulsed Nd:YAG laser (pulse duration = 250 ns, wavelength = 1064 nm). The surface of silicon wafer before and after laser ablation was studied using optical microscopy, scanning electron microscopy (SEM) and energy dispersive X-ray analysis (EDX). The results showed that the ablation of silicon surface in liquid by pulsed laser was done by the process of melt expulsion under the influence of the confined plasma-induced pressure or shock wave trapped between the silicon wafer and the liquid. The X-ray diffraction‌ (XRD) pattern of Si wafer after laser ablation showed that 4H-SiC layer is formed on its surface. The formation of the above layer was also confirmed by Raman spectroscopy, and X-ray photoelectron spectroscopy‌ (XPS), as well as EDX was utilized. The reflectance of samples decreased with increasing pulse energy. Therefore, the morphological alteration and the formation of SiC layer at high energy increase absorption intensity in the UV‌-vis regions. Theoretical calculations confirm that the formation of silicon carbide from graphene oxide and silicon wafer is considerably endothermic. Development of new methods for increasing the reflectance without causing harmful effects is still an important issue for crystalline Si solar cells. By using the method described in this paper, the optical properties of solar cells can be improved.

Drugging the methylome: DNA methylation and memory.

Science.gov (United States)

Kennedy, Andrew J; Sweatt, J David

2016-01-01

Over the past decade, since epigenetic mechanisms were first implicated in memory formation and synaptic plasticity, dynamic DNA methylation reactions have been identified as integral to long-term memory formation, maintenance, and recall. This review incorporates various new findings that DNA methylation mechanisms are important regulators of non-Hebbian plasticity mechanisms, suggesting that these epigenetic mechanisms are a fundamental link between synaptic plasticity and metaplasticity. Because the field of neuroepigenetics is so young and the biochemical tools necessary to probe gene-specific questions are just now being developed and used, this review also speculates about the direction and potential of therapeutics that target epigenetic mechanisms in the central nervous system and the unique pharmacokinetic and pharmacodynamic properties that epigenetic therapies may possess. Mapping the dynamics of the epigenome in response to experiential learning, even a single epigenetic mark in isolation, remains a significant technical and bioinformatic hurdle facing the field, but will be necessary to identify changes to the methylome that govern memory-associated gene expression and effectively drug the epigenome.

Mercury methylation and bacterial activity associated to tropical phytoplankton

International Nuclear Information System (INIS)

Coelho-Souza, Sergio A.; Guimaraes, Jean R.D.; Mauro, Jane B.N.; Miranda, Marcio R.; Azevedo, Sandra M.F.O.

2006-01-01

The methylated form of mercury (Hg), methylmercury (MeHg), is one of the most toxic pollutants. Biotic and/or abiotic methylation, often associated to sulfate-reducing bacteria metabolism, occurs in aquatic environments and in many tropical areas, mostly in the periphyton associated to floating macrophyte roots. Data about mercury methylation by phytoplankton are scarce and the aim of this study was to verify the biotic influence in the methylation process in Microcystis aeruginosa and Sineccocystis sp. laboratory strains and in natural populations of phytoplankton from two different aquatic systems, the mesotrophic Ribeirao das Lajes reservoir and hypereutrophic oligohaline Jacarepagua lagoon, Rio de Janeiro state, Brazil. Adapted radiochemical techniques were used to measure sulfate-reduction, mercury methylation and bacterial activity in phytoplankton samples. Methyl- 203 Hg formation from added inorganic 203 Hg and 3 H-Leucine uptake were measured by liquid scintillation as well as sulfate-reduction, estimated as H 2 35 S produced from added Na 2 35 SO 4 . There was no significant difference in low methylation potentials (0.37%) among the two cyanobacterium species studied in laboratory conditions. At Ribeirao das Lajes reservoir, there was no significant difference in methylation, bacterial activity and sulfate-reduction of surface sediment between the sampling points. Methylation in sediments (3-4%) was higher than in phytoplankton (1.5%), the opposite being true for bacterial activity (sediment mean 6.6 against 150.3 nmol gdw -1 h -1 for phytoplankton samples). At Jacarepagua lagoon, an expressive bacterial activity (477.1 x 10 3 nmol gdw -1 h -1 at a concentration of 1000 nM leucine) and sulfate-reduction (∼21% H 2 35 S trapped) associated to phytoplankton (mostly cyanobacteria M. aeruginosa) was observed, but mercury methylation was not detected

Mercury methylation and bacterial activity associated to tropical phytoplankton

Energy Technology Data Exchange (ETDEWEB)

Coelho-Souza, Sergio A. [Laboratorio de Tracadores Wolfgang Pfeiffer, SL 62, Instituto de Biofisica Carlos Chagas Filho, Bloco G, Ilha do Fundao, Universidade Federal do Rio de Janeiro (IBCCF/UFRJ), RJ, CEP 21949-900 (Brazil); Guimaraes, Jean R.D. [Laboratorio de Tracadores Wolfgang Pfeiffer, SL 62, Instituto de Biofisica Carlos Chagas Filho, Bloco G, Ilha do Fundao, Universidade Federal do Rio de Janeiro (IBCCF/UFRJ), RJ, CEP 21949-900 (Brazil)]. E-mail: jeanrdg@biof.ufrj.br; Mauro, Jane B.N. [Laboratorio de Tracadores Wolfgang Pfeiffer, SL 62, Instituto de Biofisica Carlos Chagas Filho, Bloco G, Ilha do Fundao, Universidade Federal do Rio de Janeiro (IBCCF/UFRJ), RJ, CEP 21949-900 (Brazil); Miranda, Marcio R. [Laboratorio de Tracadores Wolfgang Pfeiffer, SL 62, Instituto de Biofisica Carlos Chagas Filho, Bloco G, Ilha do Fundao, Universidade Federal do Rio de Janeiro (IBCCF/UFRJ), RJ, CEP 21949-900 (Brazil); Azevedo, Sandra M.F.O. [Laboratorio de Ecofisiologia e Toxicologia de Cianobacterias, IBCCF/UFRJ, RJ (Brazil)

2006-07-01

The methylated form of mercury (Hg), methylmercury (MeHg), is one of the most toxic pollutants. Biotic and/or abiotic methylation, often associated to sulfate-reducing bacteria metabolism, occurs in aquatic environments and in many tropical areas, mostly in the periphyton associated to floating macrophyte roots. Data about mercury methylation by phytoplankton are scarce and the aim of this study was to verify the biotic influence in the methylation process in Microcystis aeruginosa and Sineccocystis sp. laboratory strains and in natural populations of phytoplankton from two different aquatic systems, the mesotrophic Ribeirao das Lajes reservoir and hypereutrophic oligohaline Jacarepagua lagoon, Rio de Janeiro state, Brazil. Adapted radiochemical techniques were used to measure sulfate-reduction, mercury methylation and bacterial activity in phytoplankton samples. Methyl-{sup 203}Hg formation from added inorganic {sup 203}Hg and {sup 3}H-Leucine uptake were measured by liquid scintillation as well as sulfate-reduction, estimated as H{sub 2} {sup 35}S produced from added Na{sub 2} {sup 35}SO{sub 4}. There was no significant difference in low methylation potentials (0.37%) among the two cyanobacterium species studied in laboratory conditions. At Ribeirao das Lajes reservoir, there was no significant difference in methylation, bacterial activity and sulfate-reduction of surface sediment between the sampling points. Methylation in sediments (3-4%) was higher than in phytoplankton (1.5%), the opposite being true for bacterial activity (sediment mean 6.6 against 150.3 nmol gdw{sup -1} h{sup -1} for phytoplankton samples). At Jacarepagua lagoon, an expressive bacterial activity (477.1 x 10{sup 3} nmol gdw{sup -1} h{sup -1} at a concentration of 1000 nM leucine) and sulfate-reduction ({approx}21% H{sub 2} {sup 35}S trapped) associated to phytoplankton (mostly cyanobacteria M. aeruginosa) was observed, but mercury methylation was not detected.

MethPrimer: designing primers for methylation PCRs.

Science.gov (United States)

Li, Long-Cheng; Dahiya, Rajvir

2002-11-01

DNA methylation is an epigenetic mechanism of gene regulation. Bisulfite- conversion-based PCR methods, such as bisulfite sequencing PCR (BSP) and methylation specific PCR (MSP), remain the most commonly used techniques for methylation mapping. Existing primer design programs developed for standard PCR cannot handle primer design for bisulfite-conversion-based PCRs due to changes in DNA sequence context caused by bisulfite treatment and many special constraints both on the primers and the region to be amplified for such experiments. Therefore, the present study was designed to develop a program for such applications. MethPrimer, based on Primer 3, is a program for designing PCR primers for methylation mapping. It first takes a DNA sequence as its input and searches the sequence for potential CpG islands. Primers are then picked around the predicted CpG islands or around regions specified by users. MethPrimer can design primers for BSP and MSP. Results of primer selection are delivered through a web browser in text and in graphic view.

Blow-up of the quantum potential for a free particle in one dimension

International Nuclear Information System (INIS)

Devillanova, G.; Maddalena, F.; Florio, G.

2013-01-01

We derive a non-linear differential equation that must be satisfied by the quantum potential, in the context of the Madelung equations, in one dimension for a particular class of wave functions. In this case, we exhibit explicit conditions leading to the blow-up of the quantum potential of a free particle at the boundary of the compact support of the probability density.

Differential pulse voltammetric determination of methyl parathion based on multiwalled carbon nanotubes–poly(acrylamide) nanocomposite film modified electrode

International Nuclear Information System (INIS)

Zeng, Yanbo; Yu, Dajun; Yu, Yanyan; Zhou, Tianshu; Shi, Guoyue

2012-01-01

Highlights: ► A sensitive electrochemical sensor for detecting methyl parathion in environmental samples. ► The preparation, characterization and application of this novel MWCNTs–PAAM nanocomposite. ► The MWCNTs–PAAM/GCE exhibited a high adsorption and strong affinity toward methyl parathion. ► Wide linear range and low detection limit of the proposed method for detecting methyl parathion. - Abstract: A sensitive electrochemical differential pulse voltammetry method was developed for detecting methyl parathion based on multiwalled carbon nanotubes–poly(acrylamide) (MWCNTs–PAAM) nanocomposite film modified glassy carbon electrode. The novel MWCNTs–PAAM nanocomposite, containing high content of amide groups, was synthesized by PAAM polymerizing at the vinyl group functionalized MWCNTs surface using free radical polymerization. The MWCNTs–PAAM nanocomposite was characterized by Fourier transform infrared spectroscopy, thermal gravimetric analysis and scanning electron microscopy. Electrochemical behavior and interference studies of MWCNTs–PAAM/GCE for methyl parathion were investigated. The experimental results demonstrated that the MWCNTs–PAAM/GCE exhibited a high adsorption and strong affinity toward methyl parathion compared with some metal ions and nitroaromatic compounds, which exist in environmental samples. The adsorbed amount of methyl parathion on the MWCNTs–PAAM/GCE approached the equilibrium value upon 5 min adsorption time. A linear calibration curve for methyl parathion was obtained in the concentration range from 5.0 × 10 −9 to 1.0 × 10 −5 mol L −1 , with a detection limit of 2.0 × 10 −9 mol L −1 . The MWCNTs–PAAM/GCE was proved to be a suitable sensing tool for the fast, sensitive and selective determination of methyl parathion in environmental water samples.

Synthesis and luminescence properties of novel 4-(N-carbazole methyl) benzoyl hydrazone Schiff bases

International Nuclear Information System (INIS)

Guo Dongcai; Wu Panliang; Tan Hui; Xia Long; Zhou Wenhui

2011-01-01

4-(N-carbazole methyl) benzoyl hydrazine was synthesized on the basis of carbazole, and then nine novel carbazolyl acylhydrazone Schiff bases were synthesized by the condensation reaction between 4-(N-carbazole methyl) benzoyl hydrazine and the substituted benzaldehydes. The relationships between the substituted group types and the UV fluorescence spectral properties, as well as the fluorescence quantum yields of the title Schiff bases were also investigated. The results show that the introduction of both the donating and accepting electron groups causes various grade redshifts of the fluorescence characteristic emission peak of the title Schiff bases to occur.The fluorescence quantum yields of the title Schiff bases with the donating group are increased, and the highest fluorescence quantum yield is up to 0.703. - Highlights: → Nine novel Schiff bases have been designed and synthesized. → Introduction of the donating electron groups causes various grade red shifts of the fluorescence characteristic emission peak and the UV characteristic absorption peak of the synthesized Schiff bases. → Introduction of the donating electron groups causes the fluorescence quantum yields to be increased considerably. →Introduction of the accepting electron groups causes the fluorescence intensity and quantum yield of the synthesized Schiff bases to be reduced. → Fluorescence quantum yield of o-hydroxyl-substituted Schiff base is up to 0.703; this Schiff base is expected to be used as hole transport optical material.

Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq)-A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes.

Science.gov (United States)

Chwialkowska, Karolina; Korotko, Urszula; Kosinska, Joanna; Szarejko, Iwona; Kwasniewski, Miroslaw

2017-01-01

Epigenetic mechanisms, including histone modifications and DNA methylation, mutually regulate chromatin structure, maintain genome integrity, and affect gene expression and transposon mobility. Variations in DNA methylation within plant populations, as well as methylation in response to internal and external factors, are of increasing interest, especially in the crop research field. Methylation Sensitive Amplification Polymorphism (MSAP) is one of the most commonly used methods for assessing DNA methylation changes in plants. This method involves gel-based visualization of PCR fragments from selectively amplified DNA that are cleaved using methylation-sensitive restriction enzymes. In this study, we developed and validated a new method based on the conventional MSAP approach called Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq). We improved the MSAP-based approach by replacing the conventional separation of amplicons on polyacrylamide gels with direct, high-throughput sequencing using Next Generation Sequencing (NGS) and automated data analysis. MSAP-Seq allows for global sequence-based identification of changes in DNA methylation. This technique was validated in Hordeum vulgare . However, MSAP-Seq can be straightforwardly implemented in different plant species, including crops with large, complex and highly repetitive genomes. The incorporation of high-throughput sequencing into MSAP-Seq enables parallel and direct analysis of DNA methylation in hundreds of thousands of sites across the genome. MSAP-Seq provides direct genomic localization of changes and enables quantitative evaluation. We have shown that the MSAP-Seq method specifically targets gene-containing regions and that a single analysis can cover three-quarters of all genes in large genomes. Moreover, MSAP-Seq's simplicity, cost effectiveness, and high-multiplexing capability make this method highly affordable. Therefore, MSAP-Seq can be used for DNA methylation analysis in crop

Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq—A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes

Directory of Open Access Journals (Sweden)

Karolina Chwialkowska

2017-11-01

Full Text Available Epigenetic mechanisms, including histone modifications and DNA methylation, mutually regulate chromatin structure, maintain genome integrity, and affect gene expression and transposon mobility. Variations in DNA methylation within plant populations, as well as methylation in response to internal and external factors, are of increasing interest, especially in the crop research field. Methylation Sensitive Amplification Polymorphism (MSAP is one of the most commonly used methods for assessing DNA methylation changes in plants. This method involves gel-based visualization of PCR fragments from selectively amplified DNA that are cleaved using methylation-sensitive restriction enzymes. In this study, we developed and validated a new method based on the conventional MSAP approach called Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq. We improved the MSAP-based approach by replacing the conventional separation of amplicons on polyacrylamide gels with direct, high-throughput sequencing using Next Generation Sequencing (NGS and automated data analysis. MSAP-Seq allows for global sequence-based identification of changes in DNA methylation. This technique was validated in Hordeum vulgare. However, MSAP-Seq can be straightforwardly implemented in different plant species, including crops with large, complex and highly repetitive genomes. The incorporation of high-throughput sequencing into MSAP-Seq enables parallel and direct analysis of DNA methylation in hundreds of thousands of sites across the genome. MSAP-Seq provides direct genomic localization of changes and enables quantitative evaluation. We have shown that the MSAP-Seq method specifically targets gene-containing regions and that a single analysis can cover three-quarters of all genes in large genomes. Moreover, MSAP-Seq's simplicity, cost effectiveness, and high-multiplexing capability make this method highly affordable. Therefore, MSAP-Seq can be used for DNA methylation

EZH2-mediated α-actin methylation needs lncRNA TUG1, and promotes the cortex cytoskeleton formation in VSMCs.

Science.gov (United States)

Chen, Rong; Kong, Peng; Zhang, Fan; Shu, Ya-Nan; Nie, Xi; Dong, Li-Hua; Lin, Yan-Ling; Xie, Xiao-Li; Zhao, Li-Li; Zhang, Xiang-Jian; Han, Mei

2017-06-15

Recent studies have revealed that long non-coding RNAs (lncRNAs) participate in vascular homeostasis and pathophysiological conditions development. But still very few literatures elucidate the regulatory mechanism of non-coding RNAs in this biological process. Here we identified lncRNA taurine up-regulated gene 1 (TUG1) in rat vascular smooth muscle cells (VSMCs), and got 4612bp nucleotide sequence. The expression level of TUG1 RNA was increased in synthetic VSMCs by real-time PCR analysis. Meanwhile, the expression of enhancer of zeste homolog 2 (EZH2) (TUG1 binding protein) increased in cytoplasm of VSMCs under the same conditions. Immunofluoresce analysis displayed the colocalization of EZH2 with α-actin in cytoplasm and F-actin in cell edge ruffles. This leads us to hypothesize the existence of cytoplasmic TUG1/EZH2/α-actin complex. Using RNA pull down assay, we found that TUG1 interacted with both EZH2 and α-actin. Disruption of TUG1 abolished the interaction of EZH2 with α-actin, and accelerated depolymerization of F-actin in VSMCs. Based on EZH2 methyltransferase activity and the potential methylation sites in α-actin structure, we revealed that α-actin was lysine-methylated. Furthermore, the methylation of α-actin was inhibited by knockdown of TUG1. In conclusion, these findings partly suggested that EZH2-mediated methylation of α-actin may be dependent on TUG1, and thereby promotes cortex F-actin polymerization in synthetic VSMCs. Copyright © 2017. Published by Elsevier B.V.

Inhibiting DNA methylation alters olfactory extinction but not acquisition learning in Apis cerana and Apis mellifera.

Science.gov (United States)

Gong, Zhiwen; Wang, Chao; Nieh, James C; Tan, Ken

2016-07-01

DNA methylation plays a key role in invertebrate acquisition and extinction memory. Honey bees have excellent olfactory learning, but the role of DNA methylation in memory formation has, to date, only been studied in Apis mellifera. We inhibited DNA methylation by inhibiting DNA methyltransferase (DNMT) with zebularine (zeb) and studied the resulting effects upon olfactory acquisition and extinction memory in two honey bee species, Apis cerana and A. mellifera. We used the proboscis extension reflex (PER) assay to measure memory. We provide the first demonstration that DNA methylation is also important in the olfactory extinction learning of A. cerana. DNMT did not reduce acquisition learning in either species. However, zeb bidirectionally and differentially altered extinction learning in both species. In particular, zeb provided 1h before acquisition learning improved extinction memory retention in A. mellifera, but reduced extinction memory retention in A. cerana. The reasons for these differences are unclear, but provide a basis for future studies to explore species-specific differences in the effects of methylation on memory formation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Requirement of RIZ1 for cancer prevention by methyl-balanced diet.

Science.gov (United States)

Zhou, Wenyun; Alonso, Sergio; Takai, Daisaku; Lu, Shelly C; Yamamoto, Fumiichiro; Perucho, Manuel; Huang, Shi

2008-01-01

The typical Western diet is not balanced in methyl nutrients that regulate the level of the methyl donor S-adenosylmethionine (SAM) and its derivative metabolite S-adenosylhomocysteine (SAH), which in turn may control the activity of certain methyltransferases. Feeding rodents with amino acid defined and methyl-imbalanced diet decreases hepatic SAM and causes liver cancers. RIZ1 (PRDM2 or KMT8) is a tumor suppressor and functions in transcriptional repression by methylating histone H3 lysine 9. Here we show that a methyl-balanced diet conferred additional survival benefits compared to a tumor-inducing methyl-imbalanced diet only in mice with wild type RIZ1 but not in mice deficient in RIZ1. While absence of RIZ1 was tumorigenic in mice fed the balanced diet, its presence did not prevent tumor formation in mice fed the imbalanced diet. Microarray and gene expression analysis showed that, unlike most of its related enzymes, RIZ1 was upregulated by methyl-balanced diet. Methyl-balanced diet did not fully repress oncogenes such as c-Jun in the absence of RIZ1. Higher RIZ1 activity was associated with greater H3 lysine 9 methylation in RIZ1 target genes as shown by chromatin immunoprecipitation analysis. The data identify RIZ1 as a critical target of methyl-balanced diet in cancer prevention. The molecular understanding of dietary carcinogenesis may help people make informed choices on diet, which may greatly reduce the incidence of cancer.

Methylation of food commodities during fumigation with methyl bromide

International Nuclear Information System (INIS)

Starratt, A.N.; Bond, E.J.

1990-01-01

Sites of methylation in several commodities (wheat, oatmeal, peanuts, almonds, apples, oranges, maize, alfalfa and potatoes) during fumigation with 14 C-methyl bromide were studied. Differences were observed in levels of the major volatiles: methanol, dimethyl sulphide and methyl mercaptan, products of O- and S-methylation, resulting from treatment of the fumigated materials with 1N sodium hydroxide. In studies of maize and wheat, histidine was the amino acid which underwent the highest level of N-methylation. (author). 24 refs, 3 tabs

Allele-Specific DNA Methylation Detection by Pyrosequencing®

DEFF Research Database (Denmark)

Kristensen, Lasse Sommer; Johansen, Jens Vilstrup; Grønbæk, Kirsten

2015-01-01

DNA methylation is an epigenetic modification that plays important roles in healthy as well as diseased cells, by influencing the transcription of genes. In spite the fact that human somatic cells are diploid, most of the currently available methods for the study of DNA methylation do not provide......-effective protocol for allele-specific DNA methylation detection based on Pyrosequencing(®) of methylation-specific PCR (MSP) products including a single nucleotide polymorphism (SNP) within the amplicon....

Methylation of Hg downstream from the Bonanza Hg mine, Oregon

Science.gov (United States)

Gray, John E.; Hines, Mark E.; Krabbenhoft, David P.; Thoms, Bryn

2012-01-01

Speciation of Hg and conversion to methyl-Hg were evaluated in stream sediment, stream water, and aquatic snails collected downstream from the Bonanza Hg mine, Oregon. Total production from the Bonanza mine was >1360t of Hg, during mining from the late 1800s to 1960, ranking it as an intermediate sized Hg mine on an international scale. The primary objective of this study was to evaluate the distribution, transport, and methylation of Hg downstream from a Hg mine in a coastal temperate climatic zone. Data shown here for methyl-Hg, a neurotoxin hazardous to humans, are the first reported for sediment and water from this area. Stream sediment collected from Foster Creek flowing downstream from the Bonanza mine contained elevated Hg concentrations that ranged from 590 to 71,000ng/g, all of which (except the most distal sample) exceeded the probable effect concentration (PEC) of 1060ng/g, the Hg concentration above which harmful effects are likely to be observed in sediment-dwelling organisms. Concentrations of methyl-Hg in stream sediment collected from Foster Creek varied from 11 to 62ng/g and were highly elevated compared to regional baseline concentrations (0.11-0.82ng/g) established in this study. Methyl-Hg concentrations in stream sediment collected in this study showed a significant correlation with total organic C (TOC, R2=0.62), generally indicating increased methyl-Hg formation with increasing TOC in sediment. Isotopic-tracer methods indicated that several samples of Foster Creek sediment exhibited high rates of Hg-methylation. Concentrations of Hg in water collected downstream from the mine varied from 17 to 270ng/L and were also elevated compared to baselines, but all were below the 770ng/L Hg standard recommended by the USEPA to protect against chronic effects to aquatic wildlife. Concentrations of methyl-Hg in the water collected from Foster Creek ranged from 0.17 to 1.8ng/L, which were elevated compared to regional baseline sites upstream and downstream

Methylated site display (MSD)-AFLP, a sensitive and affordable method for analysis of CpG methylation profiles.

Science.gov (United States)

Aiba, Toshiki; Saito, Toshiyuki; Hayashi, Akiko; Sato, Shinji; Yunokawa, Harunobu; Maruyama, Toru; Fujibuchi, Wataru; Kurita, Hisaka; Tohyama, Chiharu; Ohsako, Seiichiroh

2017-03-09

It has been pointed out that environmental factors or chemicals can cause diseases that are developmental in origin. To detect abnormal epigenetic alterations in DNA methylation, convenient and cost-effective methods are required for such research, in which multiple samples are processed simultaneously. We here present methylated site display (MSD), a unique technique for the preparation of DNA libraries. By combining it with amplified fragment length polymorphism (AFLP) analysis, we developed a new method, MSD-AFLP. Methylated site display libraries consist of only DNAs derived from DNA fragments that are CpG methylated at the 5' end in the original genomic DNA sample. To test the effectiveness of this method, CpG methylation levels in liver, kidney, and hippocampal tissues of mice were compared to examine if MSD-AFLP can detect subtle differences in the levels of tissue-specific differentially methylated CpGs. As a result, many CpG sites suspected to be tissue-specific differentially methylated were detected. Nucleotide sequences adjacent to these methyl-CpG sites were identified and we determined the methylation level by methylation-sensitive restriction endonuclease (MSRE)-PCR analysis to confirm the accuracy of AFLP analysis. The differences of the methylation level among tissues were almost identical among these methods. By MSD-AFLP analysis, we detected many CpGs showing less than 5% statistically significant tissue-specific difference and less than 10% degree of variability. Additionally, MSD-AFLP analysis could be used to identify CpG methylation sites in other organisms including humans. MSD-AFLP analysis can potentially be used to measure slight changes in CpG methylation level. Regarding the remarkable precision, sensitivity, and throughput of MSD-AFLP analysis studies, this method will be advantageous in a variety of epigenetics-based research.

Radiosynthesis and radiopharmacological evaluation of [N-methyl-11C]Org 34850 as a glucocorticoid receptor (GR)-binding radiotracer

International Nuclear Information System (INIS)

Wuest, Frank; Kniess, Torsten; Henry, Brian; Peeters, Bernardus W.M.M.; Wiegerinck, Peter H.G.; Pietzsch, Jens; Bergmann, Ralf

2009-01-01

The radiosynthesis of [N-methyl- 11 C]Org 34850 as a potential brain glucocorticoid receptor (GR)-binding radiotracer is described. The radiosynthesis was accomplished via N-methylation of the corresponding desmethyl precursor with [ 11 C]methyl triflate in a remotely controlled synthesis module to give the desired compound in a radiochemical yield of 23±5% (decay-corrected, based upon [ 11 C]CO 2 ) at a specific activity of 47±12 GBq/μmol (n=15) at the end-of-synthesis (EOS). The radiochemical purity after semi-preparative HPLC purification exceeded 95%. The total synthesis time was 35-40 min after end-of-bombardment (EOB). The radiotracer is rapidly metabolized in rat plasma leading to the formation of two more hydrophilic metabolites as the major metabolites. Radiopharmacological evaluation involving biodistribution and small animal PET imaging in normal Wistar rats showed that the compound [N-methyl- 11 C]Org 34850 is not able to sufficiently penetrate the blood-brain barrier. Therefore, compound [N-methyl- 11 C]Org 34850 seems not to be a suitable PET radiotracer for imaging rat brain GRs. However, involvement of Pgp or species differences requires further clarification to establish whether the radiotracer [N-methyl- 11 C]Org 34850 may still represent a suitable candidate for imaging GRs in humans

Radiosynthesis and radiopharmacological evaluation of [N-methyl-11C]Org 34850 as a glucocorticoid receptor (GR)-binding radiotracer.

Science.gov (United States)

Wuest, Frank; Kniess, Torsten; Henry, Brian; Peeters, Bernardus W M M; Wiegerinck, Peter H G; Pietzsch, Jens; Bergmann, Ralf

2009-02-01

The radiosynthesis of [N-methyl-(11)C]Org 34850 as a potential brain glucocorticoid receptor (GR)-binding radiotracer is described. The radiosynthesis was accomplished via N-methylation of the corresponding desmethyl precursor with [(11)C]methyl triflate in a remotely controlled synthesis module to give the desired compound in a radiochemical yield of 23+/-5% (decay-corrected, based upon [(11)C]CO(2)) at a specific activity of 47+/-12 GBq/micromol (n=15) at the end-of-synthesis (EOS). The radiochemical purity after semi-preparative HPLC purification exceeded 95%. The total synthesis time was 35-40 min after end-of-bombardment (EOB). The radiotracer is rapidly metabolized in rat plasma leading to the formation of two more hydrophilic metabolites as the major metabolites. Radiopharmacological evaluation involving biodistribution and small animal PET imaging in normal Wistar rats showed that the compound [N-methyl-(11)C]Org 34850 is not able to sufficiently penetrate the blood-brain barrier. Therefore, compound [N-methyl-(11)C]Org 34850 seems not to be a suitable PET radiotracer for imaging rat brain GRs. However, involvement of Pgp or species differences requires further clarification to establish whether the radiotracer [N-methyl-(11)C]Org 34850 may still represent a suitable candidate for imaging GRs in humans.

Control of Flow Structure on Non-Slender Delta Wing: Bio-inspired Edge Modifications, Passive Bleeding, and Pulsed Blowing

Science.gov (United States)

Yavuz, Mehmet Metin; Celik, Alper; Cetin, Cenk

2016-11-01

In the present study, different flow control approaches including bio-inspired edge modifications, passive bleeding, and pulsed blowing are introduced and applied for the flow over non-slender delta wing. Experiments are conducted in a low speed wind tunnel for a 45 degree swept delta wing using qualitative and quantitative measurement techniques including laser illuminated smoke visualization, particle image velocimety (PIV), and surface pressure measurements. For the bio-inspired edge modifications, the edges of the wing are modified to dolphin fluke geometry. In addition, the concept of flexion ratio, a ratio depending on the flexible length of animal propulsors such as wings, is introduced. For passive bleeding, directing the free stream air from the pressure side of the planform to the suction side of the wing is applied. For pulsed blowing, periodic air injection through the leading edge of the wing is performed in a square waveform with 25% duty cycle at different excitation frequencies and compared with the steady and no blowing cases. The results indicate that each control approach is quite effective in terms of altering the overall flow structure on the planform. However, the success level, considering the elimination of stall or delaying the vortex breakdown, depends on the parameters in each method.

Prediction of disease-related genes based on weighted tissue-specific networks by using DNA methylation.

Science.gov (United States)

Li, Min; Zhang, Jiayi; Liu, Qing; Wang, Jianxin; Wu, Fang-Xiang

2014-01-01

Predicting disease-related genes is one of the most important tasks in bioinformatics and systems biology. With the advances in high-throughput techniques, a large number of protein-protein interactions are available, which make it possible to identify disease-related genes at the network level. However, network-based identification of disease-related genes is still a challenge as the considerable false-positives are still existed in the current available protein interaction networks (PIN). Considering the fact that the majority of genetic disorders tend to manifest only in a single or a few tissues, we constructed tissue-specific networks (TSN) by integrating PIN and tissue-specific data. We further weighed the constructed tissue-specific network (WTSN) by using DNA methylation as it plays an irreplaceable role in the development of complex diseases. A PageRank-based method was developed to identify disease-related genes from the constructed networks. To validate the effectiveness of the proposed method, we constructed PIN, weighted PIN (WPIN), TSN, WTSN for colon cancer and leukemia, respectively. The experimental results on colon cancer and leukemia show that the combination of tissue-specific data and DNA methylation can help to identify disease-related genes more accurately. Moreover, the PageRank-based method was effective to predict disease-related genes on the case studies of colon cancer and leukemia. Tissue-specific data and DNA methylation are two important factors to the study of human diseases. The same method implemented on the WTSN can achieve better results compared to those being implemented on original PIN, WPIN, or TSN. The PageRank-based method outperforms degree centrality-based method for identifying disease-related genes from WTSN.

High resolution melt curve analysis based on methylation status for human semen identification.

Science.gov (United States)

Fachet, Caitlyn; Quarino, Lawrence; Karnas, K Joy

2017-03-01

A high resolution melt curve assay to differentiate semen from blood, saliva, urine, and vaginal fluid based on methylation status at the Dapper Isoform 1 (DACT1) gene was developed. Stains made from blood, saliva, urine, semen, and vaginal fluid were obtained from volunteers and DNA was isolated using either organic extraction (saliva, urine, and vaginal fluid) or Chelex ® 100 extraction (blood and semen). Extracts were then subjected to bisulfite modification in order to convert unmethylated cytosines to uracil, consequently creating sequences whose amplicons have melt curves that vary depending on their initial methylation status. When primers designed to amplify the promoter region of the DACT1 gene were used, DNA from semen samples was distinguishable from other fluids by a having a statistically significant lower melting temperature. The assay was found to be sperm-significant since semen from a vasectomized man produced a melting temperature similar to the non-semen body fluids. Blood and semen stains stored up to 5 months and tested at various intervals showed little variation in melt temperature indicating the methylation status was stable during the course of the study. The assay is a more viable method for forensic science practice than most molecular-based methods for body fluid stain identification since it is time efficient and utilizes instrumentation common to forensic biology laboratories. In addition, the assay is advantageous over traditional presumptive chemical methods for body fluid identification since results are confirmatory and the assay offers the possibility of multiplexing which may test for multiple body fluids simultaneously.

A Paradigm for Operant Conditioning in Blow Flies ("Phormia Terrae Novae" Robineau-Desvoidy, 1830)

Science.gov (United States)

Sokolowski, Michel B. C.; Disma, Gerald; Abramson, Charles I.

2010-01-01

An operant conditioning situation for the blow fly ("Protophormia terrae novae") is described. Individual flies are trained to enter and reenter a hole as the operant response. Only a few sessions of contingent reinforcement are required to increase response rates. When the response is no longer followed by food, the rate of entering the hole…

Large Eddy simulation of flat plate film cooling at high blowing ratio using open FOAM

Science.gov (United States)

Baagherzadeh Hushmandi, Narmin

2018-06-01

In this work, numerical analysis was performed to predict the behaviour of high Reynolds number turbulent cross-flows used in film cooling applications. The geometry included one row of three discrete coolant holes inclined at 30 degrees to the main flow. In the computational model, the width of the channel was cut into one sixth and symmetry boundaries were applied in the centreline of the coolant hole and along the line of symmetry between two adjacent holes. One of the main factors that affect the performance of film cooling is the blowing ratio of coolant to the main flow. A blowing ratio equal to two was chosen in this study. Analysis showed that the common practice CFD models that employ RANS equations together with turbulence modelling under predict the film cooling effectiveness up to a factor of four. However, LES method showed better agreement of film cooling effectiveness both in tendency and absolute values compared with experimental results.

Dating Pupae of the Blow Fly Calliphora vicina Robineau–Desvoidy 1830 (Diptera: Calliphoridae for Post Mortem Interval—Estimation: Validation of Molecular Age Markers

Directory of Open Access Journals (Sweden)

Barbara K. Zajac

2018-03-01

Full Text Available Determining the age of juvenile blow flies is one of the key tasks of forensic entomology when providing evidence for the minimum post mortem interval. While the age determination of blow fly larvae is well established using morphological parameters, the current study focuses on molecular methods for estimating the age of blow flies during the metamorphosis in the pupal stage, which lasts about half the total juvenile development. It has already been demonstrated in several studies that the intraspecific variance in expression of so far used genes in blow flies is often too high to assign a certain expression level to a distinct age, leading to an inaccurate prediction. To overcome this problem, we previously identified new markers, which show a very sharp age dependent expression course during pupal development of the forensically-important blow fly Calliphora vicina Robineau–Desvoidy 1830 (Diptera: Calliphoridae by analyzing massive parallel sequencing (MPS generated transcriptome data. We initially designed and validated two quantitative polymerase chain reaction (qPCR assays for each of 15 defined pupal ages representing a daily progress during the total pupal development if grown at 17 °C. We also investigated whether the performance of these assays is affected by the ambient temperature, when rearing pupae of C. vicina at three different constant temperatures—namely 17 °C, 20 °C and 25 °C. A temperature dependency of the performance could not be observed, except for one marker. Hence, for each of the defined development landmarks, we can present gene expression profiles of one to two markers defining the mentioned progress in development.

Methylation screening of the TGFBI promoter in human lung and prostate cancer by methylation-specific PCR

International Nuclear Information System (INIS)

Shah, Jinesh N; Shao, Genze; Hei, Tom K; Zhao, Yongliang

2008-01-01

Hypermethylation of the TGFBI promoter has been shown to correlate with decreased expression of this gene in human tumor cell lines. In this study, we optimized a methylation-specific polymerase chain reaction (MSP) method and investigated the methylation status of the TGFBI promoter in human lung and prostate cancer specimens. Methylation-specific primers were designed based on the methylation profiles of the TGFBI promoter in human tumor cell lines, and MSP conditions were optimized for accurate and efficient amplification. Genomic DNA was isolated from lung tumors and prostatectomy tissues of prostate cancer patients, bisulfite-converted, and analyzed by MSP. Among 50 lung cancer samples, 44.0% (22/50) harbored methylated CpG sites in the TGFBI promoter. An analysis correlating gene methylation status with clinicopathological cancer features revealed that dense methylation of the TGFBI promoter was associated with a metastatic phenotype, with 42.9% (6/14) of metastatic lung cancer samples demonstrating dense methylation vs. only 5.6% (2/36) of primary lung cancer samples (p < 0.05). Similar to these lung cancer results, 82.0% (41/50) of prostate cancer samples harbored methylated CpG sites in the TGFBI promoter, and dense methylation of the promoter was present in 38.9% (7/18) of prostate cancer samples with the feature of locoregional invasiveness vs. only 19.4% (6/31) of prostate cancer samples without locoregional invasiveness (p < 0.05). Furthermore, promoter hypermethylation correlated with highly reduced expression of the TGFBI gene in human lung and prostate tumor cell lines. We successfully optimized a MSP method for the precise and efficient screening of TGFBI promoter methylation status. Dense methylation of the TGFBI promoter correlated with the extent of TGFBI gene silencing in tumor cell lines and was related to invasiveness of prostate tumors and metastatic status of lung cancer tumors. Thus, TGFBI promoter methylation can be used as a potential

Quantum-Size Dependence of the Energy for Vacancy Formation in Charged Small Metal Clusters. Drop Model

Science.gov (United States)

Pogosov, V. V.; Reva, V. I.

2018-04-01

Self-consistent computations of the monovacancy formation energy are performed for Na N , Mg N , and Al N (12 < N ≤ 168) spherical clusters in the drop model for stable jelly. Scenarios of the Schottky vacancy formation and "bubble vacancy blowing" are considered. It is shown that the asymptotic behavior of the size dependences of the energy for the vacancy formation by these two mechanisms is different and the difference between the characteristics of a charged and neutral cluster is entirely determined by the difference between the ionization potentials of clusters and the energies of electron attachment to them.

Feedback in formative OSCEs: comparison between direct observation and video-based formats

Science.gov (United States)

Junod Perron, Noëlle; Louis-Simonet, Martine; Cerutti, Bernard; Pfarrwaller, Eva; Sommer, Johanna; Nendaz, Mathieu

2016-01-01

Introduction Medical students at the Faculty of Medicine, University of Geneva, Switzerland, have the opportunity to practice clinical skills with simulated patients during formative sessions in preparation for clerkships. These sessions are given in two formats: 1) direct observation of an encounter followed by verbal feedback (direct feedback) and 2) subsequent review of the videotaped encounter by both student and supervisor (video-based feedback). The aim of the study was to evaluate whether content and process of feedback differed between both formats. Methods In 2013, all second- and third-year medical students and clinical supervisors involved in formative sessions were asked to take part in the study. A sample of audiotaped feedback sessions involving supervisors who gave feedback in both formats were analyzed (content and process of the feedback) using a 21-item feedback scale. Results Forty-eight audiotaped feedback sessions involving 12 supervisors were analyzed (2 direct and 2 video-based sessions per supervisor). When adjusted for the length of feedback, there were significant differences in terms of content and process between both formats; the number of communication skills and clinical reasoning items addressed were higher in the video-based format (11.29 vs. 7.71, p=0.002 and 3.71 vs. 2.04, p=0.010, respectively). Supervisors engaged students more actively during the video-based sessions than during direct feedback sessions (self-assessment: 4.00 vs. 3.17, p=0.007; active problem-solving: 3.92 vs. 3.42, p=0.009). Students made similar observations and tended to consider that the video feedback was more useful for improving some clinical skills. Conclusion Video-based feedback facilitates discussion of clinical reasoning, communication, and professionalism issues while at the same time actively engaging students. Different time and conceptual frameworks may explain observed differences. The choice of feedback format should depend on the educational

Feedback in formative OSCEs: comparison between direct observation and video-based formats

Directory of Open Access Journals (Sweden)

Noëlle Junod Perron

2016-11-01

Full Text Available Introduction: Medical students at the Faculty of Medicine, University of Geneva, Switzerland, have the opportunity to practice clinical skills with simulated patients during formative sessions in preparation for clerkships. These sessions are given in two formats: 1 direct observation of an encounter followed by verbal feedback (direct feedback and 2 subsequent review of the videotaped encounter by both student and supervisor (video-based feedback. The aim of the study was to evaluate whether content and process of feedback differed between both formats. Methods: In 2013, all second- and third-year medical students and clinical supervisors involved in formative sessions were asked to take part in the study. A sample of audiotaped feedback sessions involving supervisors who gave feedback in both formats were analyzed (content and process of the feedback using a 21-item feedback scale. Results: Forty-eight audiotaped feedback sessions involving 12 supervisors were analyzed (2 direct and 2 video-based sessions per supervisor. When adjusted for the length of feedback, there were significant differences in terms of content and process between both formats; the number of communication skills and clinical reasoning items addressed were higher in the video-based format (11.29 vs. 7.71, p=0.002 and 3.71 vs. 2.04, p=0.010, respectively. Supervisors engaged students more actively during the video-based sessions than during direct feedback sessions (self-assessment: 4.00 vs. 3.17, p=0.007; active problem-solving: 3.92 vs. 3.42, p=0.009. Students made similar observations and tended to consider that the video feedback was more useful for improving some clinical skills. Conclusion: Video-based feedback facilitates discussion of clinical reasoning, communication, and professionalism issues while at the same time actively engaging students. Different time and conceptual frameworks may explain observed differences. The choice of feedback format should depend on

Transport of nonintrinsic impurities injected by laser blow-off method

International Nuclear Information System (INIS)

Bakos, J.S.

1993-09-01

The transport of nonintrinsic impurities injected by laser blow-off method is theoretically described by solving the two-dimensional (radial and toroidal) time dependent equations of diffusion in the edge plasmas of a tokamak. Explicit expressions and evaluation procedures are given for the calculation of the density profile, temperature profile and the diffusion coefficients for the atoms injected and for the ions formed from the injected atoms from the two-dimensional intensity distribution of line radiation of two sorts of atom and ions formed from the atoms measured by a (matrix) CCD camera time resolved. (orig.)

AT base pair anions versus (9-methyl-A)(1-methyl-T) base pair anions.

Science.gov (United States)

Radisic, Dunja; Bowen, Kit H; Dabkowska, Iwona; Storoniak, Piotr; Rak, Janusz; Gutowski, Maciej

2005-05-04

The anionic base pairs of adenine and thymine, (AT)(-), and 9-methyladenine and 1-methylthymine, (MAMT)(-), have been investigated both theoretically and experimentally in a complementary, synergistic study. Calculations on (AT)(-) found that it had undergone a barrier-free proton transfer (BFPT) similar to that seen in other dimer anion systems and that its structural configuration was neither Watson-Crick (WC) nor Hoogsteen (HS). The vertical detachment energy (VDE) of (AT)(-) was determined by anion photoelectron spectroscopy and found to be in agreement with the VDE value predicted by theory for the BFPT mechanism. An AT pair in DNA is structurally immobilized into the WC configuration, in part, by being bonded to the sugars of the double helix. This circumstance was mimicked by methylating the sites on both A and T where these sugars would have been tied, viz., 9-methyladenine and 1-methylthymine. Calculations found no BFPT in (MAMT)(-) and a resulting (MAMT)(-) configuration that was either HS or WC, with the configurations differing in stability by ca. 2 kcal/mol. The photoelectron spectrum of (MAMT)(-) occurred at a completely different electron binding energy than had (AT)(-). Moreover, the VDE value of (MAMT)(-) was in agreement with that predicted by theory. The configuration of (MAMT)(-) and its lack of electron-induced proton transfer are inter-related. While there may be other pathways for electron-induced DNA alterations, BFPT in the WC/HS configurations of (AT)(-) is not feasible.

AT Base Pair Anions vs. (9-methyl-A)(1-methyl-T) Base Pair Anions

International Nuclear Information System (INIS)

Radisic, Dunja; Bowen, Kit H.; Dabkowska, Iwona; Storoniak, Piotr; Rak, Janusz; Gutowski, Maciej S.

2005-01-01

The anionic base pairs of adenine and thymine, (AT)-, and 9-methyladenine and 1-methylthymine, (MAMT)-, have been investigated both theoretically and experimentally in a complementary, synergistic study. Calculations on (AT)- found that it had undergone a barrier-free proton transfer (BFPT) similar to that seen in other dimer anion systems and that its structural configuration that was neither Watson-Crick (WC) nor Hoogsteen (HS). The vertical detachment energy (VDE) of (AT)- was determined by anion photoelectron spectroscopy and found to be in agreement with the VDE value predicted by theory for the BFPT mechanism. An AT pair in DNA is structurally immobilized into the WC configuration, in part, by being bonded to the sugars of the double helix. This circumstance was mimicked by methylating the sites on both A and T where these sugars would have been tied, viz., 9-methyladenine and 1-methylthymine. Calculations found no BFPT in (MAMT)- and a resulting (MAMT)- configuration that wa s either HS or WC, with the configurations differing in stability by ca. 2 kcal/mol. The photoelectron spectrum of (MAMT)- occurred at a completely different electron binding energy than had (AT)-. Moreover, the VDE value of (MAMT)- was in agreement with that predicted by theory. The configuration of (MAMT)- and its lack of electron-induced proton transfer are inter-related. While there may be other pathways for electron-induced damage, BFPT in the WC/HS configurations of (AT)- is not feasible

Differential pulse voltammetric determination of methyl parathion based on multiwalled carbon nanotubes-poly(acrylamide) nanocomposite film modified electrode

Energy Technology Data Exchange (ETDEWEB)

Zeng, Yanbo [Department of Chemistry and Shanghai Key Laboratory of Green Chemistry and Chemical Process, East China Normal University, 3663 Zhongshan Road(N), Shanghai, 200062 (China); College of Biological, Chemical Sciences and Engineering, Jiaxing University, Jiaxing 314001 (China); Yu, Dajun; Yu, Yanyan [Department of Chemistry and Shanghai Key Laboratory of Green Chemistry and Chemical Process, East China Normal University, 3663 Zhongshan Road(N), Shanghai, 200062 (China); Zhou, Tianshu [Department of Environmental Science, East China Normal University, 3663 Zhongshan Road(N), Shanghai, 200062 (China); Shi, Guoyue, E-mail: gyshi@chem.ecnu.edu.cn [Department of Chemistry and Shanghai Key Laboratory of Green Chemistry and Chemical Process, East China Normal University, 3663 Zhongshan Road(N), Shanghai, 200062 (China)

2012-05-30

Highlights: Black-Right-Pointing-Pointer A sensitive electrochemical sensor for detecting methyl parathion in environmental samples. Black-Right-Pointing-Pointer The preparation, characterization and application of this novel MWCNTs-PAAM nanocomposite. Black-Right-Pointing-Pointer The MWCNTs-PAAM/GCE exhibited a high adsorption and strong affinity toward methyl parathion. Black-Right-Pointing-Pointer Wide linear range and low detection limit of the proposed method for detecting methyl parathion. - Abstract: A sensitive electrochemical differential pulse voltammetry method was developed for detecting methyl parathion based on multiwalled carbon nanotubes-poly(acrylamide) (MWCNTs-PAAM) nanocomposite film modified glassy carbon electrode. The novel MWCNTs-PAAM nanocomposite, containing high content of amide groups, was synthesized by PAAM polymerizing at the vinyl group functionalized MWCNTs surface using free radical polymerization. The MWCNTs-PAAM nanocomposite was characterized by Fourier transform infrared spectroscopy, thermal gravimetric analysis and scanning electron microscopy. Electrochemical behavior and interference studies of MWCNTs-PAAM/GCE for methyl parathion were investigated. The experimental results demonstrated that the MWCNTs-PAAM/GCE exhibited a high adsorption and strong affinity toward methyl parathion compared with some metal ions and nitroaromatic compounds, which exist in environmental samples. The adsorbed amount of methyl parathion on the MWCNTs-PAAM/GCE approached the equilibrium value upon 5 min adsorption time. A linear calibration curve for methyl parathion was obtained in the concentration range from 5.0 Multiplication-Sign 10{sup -9} to 1.0 Multiplication-Sign 10{sup -5} mol L{sup -1}, with a detection limit of 2.0 Multiplication-Sign 10{sup -9} mol L{sup -1}. The MWCNTs-PAAM/GCE was proved to be a suitable sensing tool for the fast, sensitive and selective determination of methyl parathion in environmental water samples.

Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq)—A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes

Science.gov (United States)

Chwialkowska, Karolina; Korotko, Urszula; Kosinska, Joanna; Szarejko, Iwona; Kwasniewski, Miroslaw

2017-01-01

Epigenetic mechanisms, including histone modifications and DNA methylation, mutually regulate chromatin structure, maintain genome integrity, and affect gene expression and transposon mobility. Variations in DNA methylation within plant populations, as well as methylation in response to internal and external factors, are of increasing interest, especially in the crop research field. Methylation Sensitive Amplification Polymorphism (MSAP) is one of the most commonly used methods for assessing DNA methylation changes in plants. This method involves gel-based visualization of PCR fragments from selectively amplified DNA that are cleaved using methylation-sensitive restriction enzymes. In this study, we developed and validated a new method based on the conventional MSAP approach called Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq). We improved the MSAP-based approach by replacing the conventional separation of amplicons on polyacrylamide gels with direct, high-throughput sequencing using Next Generation Sequencing (NGS) and automated data analysis. MSAP-Seq allows for global sequence-based identification of changes in DNA methylation. This technique was validated in Hordeum vulgare. However, MSAP-Seq can be straightforwardly implemented in different plant species, including crops with large, complex and highly repetitive genomes. The incorporation of high-throughput sequencing into MSAP-Seq enables parallel and direct analysis of DNA methylation in hundreds of thousands of sites across the genome. MSAP-Seq provides direct genomic localization of changes and enables quantitative evaluation. We have shown that the MSAP-Seq method specifically targets gene-containing regions and that a single analysis can cover three-quarters of all genes in large genomes. Moreover, MSAP-Seq's simplicity, cost effectiveness, and high-multiplexing capability make this method highly affordable. Therefore, MSAP-Seq can be used for DNA methylation analysis in crop

DNA methylation regulates transcriptional homeostasis of algal endosymbiosis in the coral model Aiptasia

KAUST Repository

Li, Yong

2017-11-03

The symbiotic relationship between cnidarians and dinoflagellates is the cornerstone of coral reef ecosystems. Although research is focusing on the molecular mechanisms underlying this symbiosis, the role of epigenetic mechanisms, which have been implicated in transcriptional regulation and acclimation to environmental change, is unknown. To assess the role of DNA methylation in the cnidarian-dinoflagellate symbiosis, we analyzed genome-wide CpG methylation, histone associations, and transcriptomic states of symbiotic and aposymbiotic anemones in the model system Aiptasia. We find methylated genes are marked by histone H3K36me3 and show significant reduction of spurious transcription and transcriptional noise, revealing a role of DNA methylation in the maintenance of transcriptional homeostasis. Changes in DNA methylation and expression show enrichment for symbiosis-related processes such as immunity, apoptosis, phagocytosis recognition and phagosome formation, and unveil intricate interactions between the underlying pathways. Our results demonstrate that DNA methylation provides an epigenetic mechanism of transcriptional homeostasis during symbiosis.

DNA methylation regulates transcriptional homeostasis of algal endosymbiosis in the coral model Aiptasia

KAUST Repository

Li, Yong; Liew, Yi Jin; Cui, Guoxin; Cziesielski, Maha J; Zahran, Noura Ibrahim Omar; Michell, Craig T; Voolstra, Christian R.; Aranda, Manuel

2017-01-01

The symbiotic relationship between cnidarians and dinoflagellates is the cornerstone of coral reef ecosystems. Although research is focusing on the molecular mechanisms underlying this symbiosis, the role of epigenetic mechanisms, which have been implicated in transcriptional regulation and acclimation to environmental change, is unknown. To assess the role of DNA methylation in the cnidarian-dinoflagellate symbiosis, we analyzed genome-wide CpG methylation, histone associations, and transcriptomic states of symbiotic and aposymbiotic anemones in the model system Aiptasia. We find methylated genes are marked by histone H3K36me3 and show significant reduction of spurious transcription and transcriptional noise, revealing a role of DNA methylation in the maintenance of transcriptional homeostasis. Changes in DNA methylation and expression show enrichment for symbiosis-related processes such as immunity, apoptosis, phagocytosis recognition and phagosome formation, and unveil intricate interactions between the underlying pathways. Our results demonstrate that DNA methylation provides an epigenetic mechanism of transcriptional homeostasis during symbiosis.

A note on Burgers' equation with time delay: Instability via finite-time blow-up

International Nuclear Information System (INIS)

Jordan, P.M.

2008-01-01

Burgers' equation with time delay is considered. Using the Cole-Hopf transformation, the exact solution of this nonlinear partial differential equation (PDE) is determined in the context of a (seemingly) well-posed initial-boundary value problem (IBVP) involving homogeneous Dirichlet data. The solution obtained, however, is shown to exhibit a delay-induced instability, suffering blow-up in finite-time

MethylMix 2.0: an R package for identifying DNA methylation genes.

Science.gov (United States)

Cedoz, Pierre-Louis; Prunello, Marcos; Brennan, Kevin; Gevaert, Olivier

2018-04-14

DNA methylation is an important mechanism regulating gene transcription, and its role in carcinogenesis has been extensively studied. Hyper and hypomethylation of genes is a major mechanism of gene expression deregulation in a wide range of diseases. At the same time, high-throughput DNA methylation assays have been developed generating vast amounts of genome wide DNA methylation measurements. We developed MethylMix, an algorithm implemented in R to identify disease specific hyper and hypomethylated genes. Here we present a new version of MethylMix that automates the construction of DNA-methylation and gene expression datasets from The Cancer Genome Atlas (TCGA). More precisely, MethylMix 2.0 incorporates two major updates: the automated downloading of DNA methylation and gene expression datasets from TCGA and the automated preprocessing of such datasets: value imputation, batch correction and CpG sites clustering within each gene. The resulting datasets can subsequently be analyzed with MethylMix to identify transcriptionally predictive methylation states. We show that the Differential Methylation Values created by MethylMix can be used for cancer subtyping. olivier.gevaert@stanford.edu. https://bioconductor.org/packages/release/bioc/manuals/MethylMix/man/MethylMix.pdf. MethylMix 2.0 was implemented as an R package and is available in bioconductor.

The autoradiolytic and the γ-induced demethylation of solid thymine-(methyl-14C)

International Nuclear Information System (INIS)

Merwitz, O.

1980-01-01

The autoradiolytic and the γ-induced demethylation of solid thymine were measured qualitatively and quantitatively for the first time with specially purified thymine-(methyl- 14 C). Analogous experiments with thymine-(methyl- 3 H) and radio-gaschromatographic analysis provided proof for the formation of molecular hydrogen and methane. Ethane was not detected. The results are discussed in connection with e.s.r.-spectroscopic studies. (author)

An 11bp region with stem formation potential is essential for de novo DNA methylation of the RPS element.

Directory of Open Access Journals (Sweden)

Matthew Gentry

Full Text Available The initiation of DNA methylation in Arabidopsis is controlled by the RNA-directed DNA methylation (RdDM pathway that uses 24nt siRNAs to recruit de novo methyltransferase DRM2 to the target site. We previously described the REPETITIVE PETUNIA SEQUENCE (RPS fragment that acts as a hot spot for de novo methylation, for which it requires the cooperative activity of all three methyltransferases MET1, CMT3 and DRM2, but not the RdDM pathway. RPS contains two identical 11nt elements in inverted orientation, interrupted by a 18nt spacer, which resembles the features of a stemloop structure. The analysis of deletion/substitution derivatives of this region showed that deletion of one 11nt element RPS is sufficient to eliminate de novo methylation of RPS. In addition, deletion of a 10nt region directly adjacent to one of the 11nt elements, significantly reduced de novo methylation. When both 11nt regions were replaced by two 11nt elements with altered DNA sequence but unchanged inverted repeat homology, DNA methylation was not affected, indicating that de novo methylation was not targeted to a specific DNA sequence element. These data suggest that de novo DNA methylation is attracted by a secondary structure to which the two 11nt elements contribute, and that the adjacent 10nt region influences the stability of this structure. This resembles the recognition of structural features by DNA methyltransferases in animals and suggests that similar mechanisms exist in plants.

DNA Methylation: A Frontier in Tooth Organogenesis and Developmental Dental Defects.

Science.gov (United States)

Wan, Mian; Li, Hongyu; Zhou, Yachuan; Du, Wei; Xu, Xin; Ye, Ling; Zhou, Xuedong; Zheng, Liwei

2018-01-01

Tooth development relies on interactions between epithelial and mesenchymal tissues, which are controlled by sophisticated networks of conserved signaling. The signaling networks regulating odontogenesis have been well characterized, but the epigenetic mechanisms underlying remain to be elucidated. In this review, we describe current researches regarding the control of various genes expression by DNA methylation during odontogenesis, summarize genomic mapping of DNA methylation in various stages of tooth formation and diverse dental tissues by high-throughput approaches, and highlight the roles of DNA methylation in odontogenesis. Researches on mammals have revealed that the genomic methylation, which occurs on cytosine residues, regulates certain genes transcription. Consequently, DNA methylation plays a crucial role in spatiotemporal organization of signaling pathways, and is essential for organogenesis. Recently, mounting evidence proves that methylation of genomes contributes to the spatiotemporal gene dynamics during odontogenesis. With emerging new technologies of mapping cytosine modifications in global genome, investigators are seeking an overall view of DNA methylome dynamics that characterize genetic information to manifest across incredibly varied tooth development stages, dental tissues, and developmental dental defects. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Requirement of RIZ1 for Cancer Prevention by Methyl-Balanced Diet

Science.gov (United States)

Zhou, Wenyun; Alonso, Sergio; Takai, Daisaku; Lu, Shelly C.; Yamamoto, Fumiichiro; Perucho, Manuel; Huang, Shi

2008-01-01

Background The typical Western diet is not balanced in methyl nutrients that regulate the level of the methyl donor S-adenosylmethionine (SAM) and its derivative metabolite S-adenosylhomocysteine (SAH), which in turn may control the activity of certain methyltransferases. Feeding rodents with amino acid defined and methyl-imbalanced diet decreases hepatic SAM and causes liver cancers. RIZ1 (PRDM2 or KMT8) is a tumor suppressor and functions in transcriptional repression by methylating histone H3 lysine 9. Methodology/Principal Findings Here we show that a methyl-balanced diet conferred additional survival benefits compared to a tumor-inducing methyl-imbalanced diet only in mice with wild type RIZ1 but not in mice deficient in RIZ1. While absence of RIZ1 was tumorigenic in mice fed the balanced diet, its presence did not prevent tumor formation in mice fed the imbalanced diet. Microarray and gene expression analysis showed that, unlike most of its related enzymes, RIZ1 was upregulated by methyl-balanced diet. Methyl-balanced diet did not fully repress oncogenes such as c-Jun in the absence of RIZ1. Higher RIZ1 activity was associated with greater H3 lysine 9 methylation in RIZ1 target genes as shown by chromatin immunoprecipiation analysis. Conclusions/Significance The data identify RIZ1 as a critical target of methyl-balanced diet in cancer prevention. The molecular understanding of dietary carcinogenesis may help people make informed choices on diet, which may greatly reduce the incidence of cancer. PMID:18852888

Effect of Dimethyl Carbonate Plasticizer on Ionic Conductivity of Methyl Cellulose-Based Polymer Electrolytes

International Nuclear Information System (INIS)

Mustafa, M.F.; Ridwan, N.I.M.; Hatta, F.F.; Yahya, M.Z.A.

2012-01-01

Influences of dimethyl carbonate (DMC) plasticizer on ionic conductivity, dielectric permittivity and electrical modulus formalism of methyl cellulose (MC)-based polymer electrolytes have been studied. The room temperature electrical conductivity as measured by impedance spectroscopy shows that a methyl cellulose film has a conductivity of ∼10 -10 S cm -1 . In this study, other than KOH ionic dopant, DMC plasticizer is also added to the polymer with the aim of enhancing the electrical conductivity of the polymer. The highest room temperature conductivity of the plasticised sample is ∼10 -5 S cm -1 . The plot of log σ versus 10 3 / T for the highest conducting sample obeys Arrhenius rule indicating that the conductivity occurs by thermally activated mechanism. (author)

Morphology and Developmental Rate of the Blow Fly, Hemipyrellia ligurriens (Diptera: Calliphoridae: Forensic Entomology Applications

Directory of Open Access Journals (Sweden)

Nophawan Bunchu

2012-01-01

Full Text Available Hemipyrellia ligurriens (Diptera: Calliphoridae is a forensically important blow fly species presented in many countries. In this study, we determined the morphology of all stages and the developmental rate of H. ligurriens reared under natural ambient conditions in Phitsanulok province, northern Thailand. Morphological features of all stages based on observing under a light microscope were described and demonstrated in order to use for identification purpose. Moreover, development time in each stage was given. The developmental time of H. ligurriens to complete metamorphosis; from egg, larva, pupa to adult, took 270.71 h for 1 cycle of development. The results from this study may be useful not only for application in forensic investigation, but also for study in its biology in the future.

Using gas blow methods to realize accurate volume measurement of radioactivity liquid

International Nuclear Information System (INIS)

Zhang Caiyun

2010-01-01

For liquid which has radioactivity, Realized the accurate volume measurement uncertainty less than 0.2% (k=2) by means of gas blow methods presented in the 'American National Standard-Nuclear Material Control-Volume Calibration Methods(ANSI N15.19-1989)' and the 'ISO Committee Drafts (ISO/TC/85/SC 5N 282 )' and Explored a set methods of Data Processing. In the article, the major problems is to solve data acquisition and function foundation and measurement uncertainty estimate. (authors)

The histone H3K9 methylation and RNAi pathways regulate normalnucleolar and repeated DNA organization by inhibiting formation ofextrachromosomal DNAs

Energy Technology Data Exchange (ETDEWEB)

Peng, Jamy C.; Karpen, Gary H.

2006-06-15

In order to identify regulators of nuclear organization, Drosophila mutants in the Su(var)3-9 histone H3K9 methyltransferase, RNAi pathway components, and other regulators of heterochromatin-mediated gene silencing were examined for altered nucleoli and positioning of repeated DNAs. Animals lacking components of the H3K9 methylation and RNAi pathways contained disorganized nucleoli, ribosomal DNA (rDNA) and satellite DNAs. The levels of H3K9 dimethylation (H3K9me2) in chromatin associated with repeated DNAs decreased dramatically in Su(var)3-9 and dcr-2 (dicer-2) mutant tissues compared to wild type. We also observed a substantial increase in extrachromosomal repeated DNAs in mutant tissues. The disorganized nucleolus phenotype depends on the presence of Ligase 4 (Lig4), and ecc DNA formation is not induced by removal of cohesin. We conclude that H3K9 methylation of rDNA and satellites, maintained by Su(var)3-9, HP1, and the RNAi pathway, is necessary for the structural stability of repeated DNAs, which is mediated through suppression of non-homologous end joining (NHEJ). These results suggest a mechanism for how local chromatin structure can regulate genome stability, and the organization of chromosomal elements and nuclear organelles.

Mechanistic investigation of the one-pot formation of amides by oxidative coupling of alcohols with amines in methanol

DEFF Research Database (Denmark)

Mielby, Jerrik Jørgen; Riisager, Anders; Fristrup, Peter

2013-01-01

The one-pot formation of amides by oxidative coupling of alcohols and amines via intermediate formation of methyl ester using supported gold and base as catalysts was studied using the Hammett methodology. Determining the relative reactivity of four different para-substituted benzyl alcohol deriv...... a theoretical Hammett plot that was in good agreement with the one obtained experimentally....

Transcription factors as readers and effectors of DNA methylation.

Science.gov (United States)

Zhu, Heng; Wang, Guohua; Qian, Jiang

2016-08-01

Recent technological advances have made it possible to decode DNA methylomes at single-base-pair resolution under various physiological conditions. Many aberrant or differentially methylated sites have been discovered, but the mechanisms by which changes in DNA methylation lead to observed phenotypes, such as cancer, remain elusive. The classical view of methylation-mediated protein-DNA interactions is that only proteins with a methyl-CpG binding domain (MBD) can interact with methylated DNA. However, evidence is emerging to suggest that transcription factors lacking a MBD can also interact with methylated DNA. The identification of these proteins and the elucidation of their characteristics and the biological consequences of methylation-dependent transcription factor-DNA interactions are important stepping stones towards a mechanistic understanding of methylation-mediated biological processes, which have crucial implications for human development and disease.

The effect of sugars in relation to methyl jasmonate on anthocyanin formation in the roots of Kalanchoe blossfeldiana (Poelln.

Directory of Open Access Journals (Sweden)

Justyna Góraj-Koniarska

2015-07-01

Full Text Available This study investigated the effects of different sugars (sucrose, fructose, glucose and sugar alcohols (mannitol, sorbitol applied alone and in solution with methyl jasmonate (JA-Me on the anthocyanin content in the roots of Kalanchoe blossfeldiana. None of the sugars used individually in the experiment affected anthocyanin accumulation in the roots of intact plants. The anthocyanin level was similar to that in the control. Sucrose at concentrations of 0.5% and 3.0%, and glucose at a concentration of 3.0% inhibited anthocyanin accumulation induced by JA-Me. Only fructose at a concentration of 3.0% stimulated anthocyanin accumulation induced by JA-Me. The sugar alcohols, mannitol at a concentration of 3.0% and sorbitol at 0.5% and 3.0%, inhibited anthocyanin accumulation in the roots of intact K. blossfeldiana plants induced by JA-Me. In excised roots, both sugars and JA-Me used individually did not affect the formation of anthocyanins. Also, the sugar alcohols (mannitol and sorbitol applied simultaneously with JA-Me had no effect on the accumulation of anthocyanins. However, roots treated with sugars (sucrose, fructose, glucose in solution with JA-Me promoted the induction of anthocyanins in the apical parts of the roots.  The results suggest that anthocyanin elicitation in the roots of K. blossfeldiana by methyl jasmonate may be dependent on the interaction of JA-Me with sugars transported from the stems (leaves to the roots.

The formation of soap bubbles created by blowing on soap films

Science.gov (United States)

Salkin, Louis; Schmit, Alexandre; Panizza, Pascal; Courbin, Laurent

2015-11-01

Using either circular bubble wands or long-lasting vertically falling soap films having an adjustable steady state thickness, we study the formation of soap bubbles created when air is blown through a nozzle onto a soap film. We vary nozzle radius, film size, space between the film and nozzle, and gas density, and we measure the gas velocity threshold above which bubbles are generated. The response is sensitive to confinement, that is, the ratio between film and jet sizes, and dissipation in the turbulent gas jet which is a function of the distance from the nozzle to the film. We observe four different regimes that we rationalize by comparing the dynamic pressure of a jet on the film and the Laplace pressure needed to create the curved surface of a bubble.

Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures.

Science.gov (United States)

Schwalbe, E C; Hicks, D; Rafiee, G; Bashton, M; Gohlke, H; Enshaei, A; Potluri, S; Matthiesen, J; Mather, M; Taleongpong, P; Chaston, R; Silmon, A; Curtis, A; Lindsey, J C; Crosier, S; Smith, A J; Goschzik, T; Doz, F; Rutkowski, S; Lannering, B; Pietsch, T; Bailey, S; Williamson, D; Clifford, S C

2017-10-18

Rapid and reliable detection of disease-associated DNA methylation patterns has major potential to advance molecular diagnostics and underpin research investigations. We describe the development and validation of minimal methylation classifier (MIMIC), combining CpG signature design from genome-wide datasets, multiplex-PCR and detection by single-base extension and MALDI-TOF mass spectrometry, in a novel method to assess multi-locus DNA methylation profiles within routine clinically-applicable assays. We illustrate the application of MIMIC to successfully identify the methylation-dependent diagnostic molecular subgroups of medulloblastoma (the most common malignant childhood brain tumour), using scant/low-quality samples remaining from the most recently completed pan-European medulloblastoma clinical trial, refractory to analysis by conventional genome-wide DNA methylation analysis. Using this approach, we identify critical DNA methylation patterns from previously inaccessible cohorts, and reveal novel survival differences between the medulloblastoma disease subgroups with significant potential for clinical exploitation.

A review of bacterial interactions with blow flies (Diptera: Calliphoridae) of medical, veterinary, and forensic importance

Science.gov (United States)

Blow flies are commonly associated with decomposing material. In most cases, the larvae are found feeding on decomposing vertebrate remains. However, some species have specialized to feed on living tissue or can survive on other alternate resources like feces. Because of their affiliation with su...

Regulation and function of DNA methylation in plants and animals

KAUST Repository