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Sample records for methods full text

  1. Full text

    African Journals Online (AJOL)

    IndexCopernicus Portal System

    1Department of Surgery, Obafemi Awolowo, 2Department of Community Health,. Obafemi ... the use of mesh, either open or laparoscopic [15,21], but this ... recurrence. METHODS AND PATIENTS .... TAH-BSO* = Total abdominal hysterectomy and bilateral salpingoophorectomy. Recurrent I.H. # = Recurrent inguinal hernia.

  2. Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion.

    Science.gov (United States)

    Agarwal, Shashank; Yu, Hong

    2009-12-01

    Biomedical texts can be typically represented by four rhetorical categories: Introduction, Methods, Results and Discussion (IMRAD). Classifying sentences into these categories can benefit many other text-mining tasks. Although many studies have applied different approaches for automatically classifying sentences in MEDLINE abstracts into the IMRAD categories, few have explored the classification of sentences that appear in full-text biomedical articles. We first evaluated whether sentences in full-text biomedical articles could be reliably annotated into the IMRAD format and then explored different approaches for automatically classifying these sentences into the IMRAD categories. Our results show an overall annotation agreement of 82.14% with a Kappa score of 0.756. The best classification system is a multinomial naïve Bayes classifier trained on manually annotated data that achieved 91.95% accuracy and an average F-score of 91.55%, which is significantly higher than baseline systems. A web version of this system is available online at-http://wood.ims.uwm.edu/full_text_classifier/.

  3. FTP: Full-Text Publishing?

    Science.gov (United States)

    Jul, Erik

    1992-01-01

    Describes the use of file transfer protocol (FTP) on the INTERNET computer network and considers its use as an electronic publishing system. The differing electronic formats of text files are discussed; the preparation and access of documents are described; and problems are addressed, including a lack of consistency. (LRW)

  4. The Weaknesses of Full-Text Searching

    Science.gov (United States)

    Beall, Jeffrey

    2008-01-01

    This paper provides a theoretical critique of the deficiencies of full-text searching in academic library databases. Because full-text searching relies on matching words in a search query with words in online resources, it is an inefficient method of finding information in a database. This matching fails to retrieve synonyms, and it also retrieves…

  5. Systematic characterizations of text similarity in full text biomedical publications.

    Science.gov (United States)

    Sun, Zhaohui; Errami, Mounir; Long, Tara; Renard, Chris; Choradia, Nishant; Garner, Harold

    2010-09-15

    Computational methods have been used to find duplicate biomedical publications in MEDLINE. Full text articles are becoming increasingly available, yet the similarities among them have not been systematically studied. Here, we quantitatively investigated the full text similarity of biomedical publications in PubMed Central. 72,011 full text articles from PubMed Central (PMC) were parsed to generate three different datasets: full texts, sections, and paragraphs. Text similarity comparisons were performed on these datasets using the text similarity algorithm eTBLAST. We measured the frequency of similar text pairs and compared it among different datasets. We found that high abstract similarity can be used to predict high full text similarity with a specificity of 20.1% (95% CI [17.3%, 23.1%]) and sensitivity of 99.999%. Abstract similarity and full text similarity have a moderate correlation (Pearson correlation coefficient: -0.423) when the similarity ratio is above 0.4. Among pairs of articles in PMC, method sections are found to be the most repetitive (frequency of similar pairs, methods: 0.029, introduction: 0.0076, results: 0.0043). In contrast, among a set of manually verified duplicate articles, results are the most repetitive sections (frequency of similar pairs, results: 0.94, methods: 0.89, introduction: 0.82). Repetition of introduction and methods sections is more likely to be committed by the same authors (odds of a highly similar pair having at least one shared author, introduction: 2.31, methods: 1.83, results: 1.03). There is also significantly more similarity in pairs of review articles than in pairs containing one review and one nonreview paper (frequency of similar pairs: 0.0167 and 0.0023, respectively). While quantifying abstract similarity is an effective approach for finding duplicate citations, a comprehensive full text analysis is necessary to uncover all potential duplicate citations in the scientific literature and is helpful when

  6. Multilingual access to full text databases

    International Nuclear Information System (INIS)

    Fluhr, C.; Radwan, K.

    1990-05-01

    Many full text databases are available in only one language, or more, they may contain documents in different languages. Even if the user is able to understand the language of the documents in the database, it could be easier for him to express his need in his own language. For the case of databases containing documents in different languages, it is more simple to formulate the query in one language only and to retrieve documents in different languages. This paper present the developments and the first experiments of multilingual search, applied to french-english pair, for text data in nuclear field, based on the system SPIRIT. After reminding the general problems of full text databases search by queries formulated in natural language, we present the methods used to reformulate the queries and show how they can be expanded for multilingual search. The first results on data in nuclear field are presented (AFCEN norms and INIS abstracts). 4 refs

  7. Academic Journal Embargoes and Full Text Databases.

    Science.gov (United States)

    Brooks, Sam

    2003-01-01

    Documents the reasons for embargoes of academic journals in full text databases (i.e., publisher-imposed delays on the availability of full text content) and provides insight regarding common misconceptions. Tables present data on selected journals covering a cross-section of subjects and publishers and comparing two full text business databases.…

  8. Where Full-Text Is Viable.

    Science.gov (United States)

    Cotton, P. L.

    1987-01-01

    Defines two types of online databases: source, referring to those intended to be complete in themselves, whether full-text or abstracts; and bibliographic, meaning those that are not complete. Predictions are made about the future growth rate of these two types of databases, as well as full-text versus abstract databases. (EM)

  9. The Medline/full-text research project.

    Science.gov (United States)

    McKinin, E J; Sievert, M; Johnson, E D; Mitchell, J A

    1991-05-01

    This project was designed to test the relative efficacy of index terms and full-text for the retrieval of documents in those MEDLINE journals for which full-text searching was also available. The full-text files used were MEDIS from Mead Data Central and CCML from BRS Information Technologies. One hundred clinical medical topics were searched in these two files as well as the MEDLINE file to accumulate the necessary data. It was found that full-text identified significantly more relevant articles than did the indexed file, MEDLINE. The full-text searches, however, lacked the precision of searches done in the indexed file. Most relevant items missed in the full-text files, but identified in MEDLINE, were missed because the searcher failed to account for some aspect of natural language, used a logical or positional operator that was too restrictive, or included a concept which was implied, but not expressed in the natural language. Very few of the unique relevant full-text citations would have been retrieved by title or abstract alone. Finally, as of July, 1990 the more current issue of a journal was just as likely to appear in MEDLINE as in one of the full-text files.

  10. Selecting Full-Text Undergraduate Periodicals Databases.

    Science.gov (United States)

    Still, Julie M.; Kassabian, Vibiana

    1999-01-01

    Examines how libraries and librarians can compare full-text general periodical indices, using ProQuest Direct, Periodical Abstracts (via Ovid), and EBSCOhost as examples. Explores breadth and depth of coverage; manipulation of results (email/download/print); ease of use (searching); and indexing quirks. (AEF)

  11. Database citation in full text biomedical articles.

    Science.gov (United States)

    Kafkas, Şenay; Kim, Jee-Hyub; McEntyre, Johanna R

    2013-01-01

    Molecular biology and literature databases represent essential infrastructure for life science research. Effective integration of these data resources requires that there are structured cross-references at the level of individual articles and biological records. Here, we describe the current patterns of how database entries are cited in research articles, based on analysis of the full text Open Access articles available from Europe PMC. Focusing on citation of entries in the European Nucleotide Archive (ENA), UniProt and Protein Data Bank, Europe (PDBe), we demonstrate that text mining doubles the number of structured annotations of database record citations supplied in journal articles by publishers. Many thousands of new literature-database relationships are found by text mining, since these relationships are also not present in the set of articles cited by database records. We recommend that structured annotation of database records in articles is extended to other databases, such as ArrayExpress and Pfam, entries from which are also cited widely in the literature. The very high precision and high-throughput of this text-mining pipeline makes this activity possible both accurately and at low cost, which will allow the development of new integrated data services.

  12. Mining biological networks from full-text articles.

    Science.gov (United States)

    Czarnecki, Jan; Shepherd, Adrian J

    2014-01-01

    The study of biological networks is playing an increasingly important role in the life sciences. Many different kinds of biological system can be modelled as networks; perhaps the most important examples are protein-protein interaction (PPI) networks, metabolic pathways, gene regulatory networks, and signalling networks. Although much useful information is easily accessible in publicly databases, a lot of extra relevant data lies scattered in numerous published papers. Hence there is a pressing need for automated text-mining methods capable of extracting such information from full-text articles. Here we present practical guidelines for constructing a text-mining pipeline from existing code and software components capable of extracting PPI networks from full-text articles. This approach can be adapted to tackle other types of biological network.

  13. 48 CFR 2852.102-270 - Incorporation in full text.

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Incorporation in full text... 2852.102-270 Incorporation in full text. JAR provisions or clauses shall be incorporated in solicitations and contracts in full text. ...

  14. 48 CFR 1952.102-2 - Incorporation in full text.

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Incorporation in full text... Clauses 1952.102-2 Incorporation in full text. All IAAR provisions and clauses shall be incorporated in solicitations and/or contracts in full text. ...

  15. Layout-aware text extraction from full-text PDF of scientific articles

    Directory of Open Access Journals (Sweden)

    Ramakrishnan Cartic

    2012-05-01

    Full Text Available Abstract Background The Portable Document Format (PDF is the most commonly used file format for online scientific publications. The absence of effective means to extract text from these PDF files in a layout-aware manner presents a significant challenge for developers of biomedical text mining or biocuration informatics systems that use published literature as an information source. In this paper we introduce the ‘Layout-Aware PDF Text Extraction’ (LA-PDFText system to facilitate accurate extraction of text from PDF files of research articles for use in text mining applications. Results Our paper describes the construction and performance of an open source system that extracts text blocks from PDF-formatted full-text research articles and classifies them into logical units based on rules that characterize specific sections. The LA-PDFText system focuses only on the textual content of the research articles and is meant as a baseline for further experiments into more advanced extraction methods that handle multi-modal content, such as images and graphs. The system works in a three-stage process: (1 Detecting contiguous text blocks using spatial layout processing to locate and identify blocks of contiguous text, (2 Classifying text blocks into rhetorical categories using a rule-based method and (3 Stitching classified text blocks together in the correct order resulting in the extraction of text from section-wise grouped blocks. We show that our system can identify text blocks and classify them into rhetorical categories with Precision1 = 0.96% Recall = 0.89% and F1 = 0.91%. We also present an evaluation of the accuracy of the block detection algorithm used in step 2. Additionally, we have compared the accuracy of the text extracted by LA-PDFText to the text from the Open Access subset of PubMed Central. We then compared this accuracy with that of the text extracted by the PDF2Text system, 2commonly used to extract text from PDF

  16. Layout-aware text extraction from full-text PDF of scientific articles.

    Science.gov (United States)

    Ramakrishnan, Cartic; Patnia, Abhishek; Hovy, Eduard; Burns, Gully Apc

    2012-05-28

    The Portable Document Format (PDF) is the most commonly used file format for online scientific publications. The absence of effective means to extract text from these PDF files in a layout-aware manner presents a significant challenge for developers of biomedical text mining or biocuration informatics systems that use published literature as an information source. In this paper we introduce the 'Layout-Aware PDF Text Extraction' (LA-PDFText) system to facilitate accurate extraction of text from PDF files of research articles for use in text mining applications. Our paper describes the construction and performance of an open source system that extracts text blocks from PDF-formatted full-text research articles and classifies them into logical units based on rules that characterize specific sections. The LA-PDFText system focuses only on the textual content of the research articles and is meant as a baseline for further experiments into more advanced extraction methods that handle multi-modal content, such as images and graphs. The system works in a three-stage process: (1) Detecting contiguous text blocks using spatial layout processing to locate and identify blocks of contiguous text, (2) Classifying text blocks into rhetorical categories using a rule-based method and (3) Stitching classified text blocks together in the correct order resulting in the extraction of text from section-wise grouped blocks. We show that our system can identify text blocks and classify them into rhetorical categories with Precision1 = 0.96% Recall = 0.89% and F1 = 0.91%. We also present an evaluation of the accuracy of the block detection algorithm used in step 2. Additionally, we have compared the accuracy of the text extracted by LA-PDFText to the text from the Open Access subset of PubMed Central. We then compared this accuracy with that of the text extracted by the PDF2Text system, 2commonly used to extract text from PDF. Finally, we discuss preliminary error analysis for

  17. Is searching full text more effective than searching abstracts?

    Directory of Open Access Journals (Sweden)

    Lin Jimmy

    2009-02-01

    Full Text Available Abstract Background With the growing availability of full-text articles online, scientists and other consumers of the life sciences literature now have the ability to go beyond searching bibliographic records (title, abstract, metadata to directly access full-text content. Motivated by this emerging trend, I posed the following question: is searching full text more effective than searching abstracts? This question is answered by comparing text retrieval algorithms on MEDLINE® abstracts, full-text articles, and spans (paragraphs within full-text articles using data from the TREC 2007 genomics track evaluation. Two retrieval models are examined: bm25 and the ranking algorithm implemented in the open-source Lucene search engine. Results Experiments show that treating an entire article as an indexing unit does not consistently yield higher effectiveness compared to abstract-only search. However, retrieval based on spans, or paragraphs-sized segments of full-text articles, consistently outperforms abstract-only search. Results suggest that highest overall effectiveness may be achieved by combining evidence from spans and full articles. Conclusion Users searching full text are more likely to find relevant articles than searching only abstracts. This finding affirms the value of full text collections for text retrieval and provides a starting point for future work in exploring algorithms that take advantage of rapidly-growing digital archives. Experimental results also highlight the need to develop distributed text retrieval algorithms, since full-text articles are significantly longer than abstracts and may require the computational resources of multiple machines in a cluster. The MapReduce programming model provides a convenient framework for organizing such computations.

  18. Is searching full text more effective than searching abstracts?

    Science.gov (United States)

    Lin, Jimmy

    2009-02-03

    With the growing availability of full-text articles online, scientists and other consumers of the life sciences literature now have the ability to go beyond searching bibliographic records (title, abstract, metadata) to directly access full-text content. Motivated by this emerging trend, I posed the following question: is searching full text more effective than searching abstracts? This question is answered by comparing text retrieval algorithms on MEDLINE abstracts, full-text articles, and spans (paragraphs) within full-text articles using data from the TREC 2007 genomics track evaluation. Two retrieval models are examined: bm25 and the ranking algorithm implemented in the open-source Lucene search engine. Experiments show that treating an entire article as an indexing unit does not consistently yield higher effectiveness compared to abstract-only search. However, retrieval based on spans, or paragraphs-sized segments of full-text articles, consistently outperforms abstract-only search. Results suggest that highest overall effectiveness may be achieved by combining evidence from spans and full articles. Users searching full text are more likely to find relevant articles than searching only abstracts. This finding affirms the value of full text collections for text retrieval and provides a starting point for future work in exploring algorithms that take advantage of rapidly-growing digital archives. Experimental results also highlight the need to develop distributed text retrieval algorithms, since full-text articles are significantly longer than abstracts and may require the computational resources of multiple machines in a cluster. The MapReduce programming model provides a convenient framework for organizing such computations.

  19. Full text clustering and relationship network analysis of biomedical publications.

    Directory of Open Access Journals (Sweden)

    Renchu Guan

    Full Text Available Rapid developments in the biomedical sciences have increased the demand for automatic clustering of biomedical publications. In contrast to current approaches to text clustering, which focus exclusively on the contents of abstracts, a novel method is proposed for clustering and analysis of complete biomedical article texts. To reduce dimensionality, Cosine Coefficient is used on a sub-space of only two vectors, instead of computing the Euclidean distance within the space of all vectors. Then a strategy and algorithm is introduced for Semi-supervised Affinity Propagation (SSAP to improve analysis efficiency, using biomedical journal names as an evaluation background. Experimental results show that by avoiding high-dimensional sparse matrix computations, SSAP outperforms conventional k-means methods and improves upon the standard Affinity Propagation algorithm. In constructing a directed relationship network and distribution matrix for the clustering results, it can be noted that overlaps in scope and interests among BioMed publications can be easily identified, providing a valuable analytical tool for editors, authors and readers.

  20. Multilingual access to full text databases; Acces multilingue aux bases de donnees en texte integral

    Energy Technology Data Exchange (ETDEWEB)

    Fluhr, C; Radwan, K [Institut National des Sciences et Techniques Nucleaires (INSTN), Centre d` Etudes de Saclay, 91 - Gif-sur-Yvette (France)

    1990-05-01

    Many full text databases are available in only one language, or more, they may contain documents in different languages. Even if the user is able to understand the language of the documents in the database, it could be easier for him to express his need in his own language. For the case of databases containing documents in different languages, it is more simple to formulate the query in one language only and to retrieve documents in different languages. This paper present the developments and the first experiments of multilingual search, applied to french-english pair, for text data in nuclear field, based on the system SPIRIT. After reminding the general problems of full text databases search by queries formulated in natural language, we present the methods used to reformulate the queries and show how they can be expanded for multilingual search. The first results on data in nuclear field are presented (AFCEN norms and INIS abstracts). 4 refs.

  1. Full Text Psychology Journals Available from Popular Library Databases

    Science.gov (United States)

    Joswick, Kathleen E.

    2006-01-01

    The author identified 433 core journals in psychology and investigated their full text availability in popular databases. While 62 percent of the studied journals were available in at least one database, access from individual databases ranged from 1.4 percent to 38.1 percent of the titles. The full text of influential psychology journals is not…

  2. "Free full text articles": where to search for them?

    Science.gov (United States)

    Singh, Ashish; Singh, Manish; Singh, Ajai Kumar; Singh, Deepti; Singh, Pratibha; Sharma, Abhishek

    2011-07-01

    References form the backbone of any medical literature. Presently, because of high inflation, it is very difficult for any library/organization/college to purchase all journals. The condition is even worse for an individual person, such as private practitioners. The solution lies in the free availability of full-text articles. Here, the authors share their experiences about the accessibility of free full-text articles.

  3. Searching for Bill and Jane: Electronic Full-Text Literature.

    Science.gov (United States)

    Still, Julie; Kassabian, Vibiana

    1998-01-01

    Examines electronic full-text literature available on the World Wide Web and on CD-ROM. Discusses authors and genres, electronic texts, and fees. Highlights Shakespeare, Jane Austen, and nature writing. Provides a bibliography of Web guides, specialized Shakespeare pages, and pages dealing with the Shakespeare authorship debate and secondary…

  4. Subject Retrieval from Full-Text Databases in the Humanities

    Science.gov (United States)

    East, John W.

    2007-01-01

    This paper examines the problems involved in subject retrieval from full-text databases of secondary materials in the humanities. Ten such databases were studied and their search functionality evaluated, focusing on factors such as Boolean operators, document surrogates, limiting by subject area, proximity operators, phrase searching, wildcards,…

  5. Full text and figure display improves bioscience literature search.

    Directory of Open Access Journals (Sweden)

    Anna Divoli

    Full Text Available When reading bioscience journal articles, many researchers focus attention on the figures and their captions. This observation led to the development of the BioText literature search engine, a freely available Web-based application that allows biologists to search over the contents of Open Access Journals, and see figures from the articles displayed directly in the search results. This article presents a qualitative assessment of this system in the form of a usability study with 20 biologist participants using and commenting on the system. 19 out of 20 participants expressed a desire to use a bioscience literature search engine that displays articles' figures alongside the full text search results. 15 out of 20 participants said they would use a caption search and figure display interface either frequently or sometimes, while 4 said rarely and 1 said undecided. 10 out of 20 participants said they would use a tool for searching the text of tables and their captions either frequently or sometimes, while 7 said they would use it rarely if at all, 2 said they would never use it, and 1 was undecided. This study found evidence, supporting results of an earlier study, that bioscience literature search systems such as PubMed should show figures from articles alongside search results. It also found evidence that full text and captions should be searched along with the article title, metadata, and abstract. Finally, for a subset of users and information needs, allowing for explicit search within captions for figures and tables is a useful function, but it is not entirely clear how to cleanly integrate this within a more general literature search interface. Such a facility supports Open Access publishing efforts, as it requires access to full text of documents and the lifting of restrictions in order to show figures in the search interface.

  6. SSRF-PDM and its full-text retrieval improvement

    International Nuclear Information System (INIS)

    Tong Xingfan; Deng Huiyu; Li Zhiming

    2011-01-01

    Project and data management is essential for Shanghai Synchrotron Radiation Facility (SSRF) which is a huge scientific platform for science research and technology development in China. With Product Data Management (PDM) system, SSRF improves its information service greatly. In this paper, we introduce the network structure, configuration modules and client terminals of the PDM system and the improvement in full-text retrieval subsystem, including its algorithms and details of implement in order to optimize the retrieval system.(authors)

  7. Full text and figure display improves bioscience literature search.

    Science.gov (United States)

    Divoli, Anna; Wooldridge, Michael A; Hearst, Marti A

    2010-04-14

    When reading bioscience journal articles, many researchers focus attention on the figures and their captions. This observation led to the development of the BioText literature search engine, a freely available Web-based application that allows biologists to search over the contents of Open Access Journals, and see figures from the articles displayed directly in the search results. This article presents a qualitative assessment of this system in the form of a usability study with 20 biologist participants using and commenting on the system. 19 out of 20 participants expressed a desire to use a bioscience literature search engine that displays articles' figures alongside the full text search results. 15 out of 20 participants said they would use a caption search and figure display interface either frequently or sometimes, while 4 said rarely and 1 said undecided. 10 out of 20 participants said they would use a tool for searching the text of tables and their captions either frequently or sometimes, while 7 said they would use it rarely if at all, 2 said they would never use it, and 1 was undecided. This study found evidence, supporting results of an earlier study, that bioscience literature search systems such as PubMed should show figures from articles alongside search results. It also found evidence that full text and captions should be searched along with the article title, metadata, and abstract. Finally, for a subset of users and information needs, allowing for explicit search within captions for figures and tables is a useful function, but it is not entirely clear how to cleanly integrate this within a more general literature search interface. Such a facility supports Open Access publishing efforts, as it requires access to full text of documents and the lifting of restrictions in order to show figures in the search interface.

  8. UKPMC: a full text article resource for the life sciences.

    Science.gov (United States)

    McEntyre, Johanna R; Ananiadou, Sophia; Andrews, Stephen; Black, William J; Boulderstone, Richard; Buttery, Paula; Chaplin, David; Chevuru, Sandeepreddy; Cobley, Norman; Coleman, Lee-Ann; Davey, Paul; Gupta, Bharti; Haji-Gholam, Lesley; Hawkins, Craig; Horne, Alan; Hubbard, Simon J; Kim, Jee-Hyub; Lewin, Ian; Lyte, Vic; MacIntyre, Ross; Mansoor, Sami; Mason, Linda; McNaught, John; Newbold, Elizabeth; Nobata, Chikashi; Ong, Ernest; Pillai, Sharmila; Rebholz-Schuhmann, Dietrich; Rosie, Heather; Rowbotham, Rob; Rupp, C J; Stoehr, Peter; Vaughan, Philip

    2011-01-01

    UK PubMed Central (UKPMC) is a full-text article database that extends the functionality of the original PubMed Central (PMC) repository. The UKPMC project was launched as the first 'mirror' site to PMC, which in analogy to the International Nucleotide Sequence Database Collaboration, aims to provide international preservation of the open and free-access biomedical literature. UKPMC (http://ukpmc.ac.uk) has undergone considerable development since its inception in 2007 and now includes both a UKPMC and PubMed search, as well as access to other records such as Agricola, Patents and recent biomedical theses. UKPMC also differs from PubMed/PMC in that the full text and abstract information can be searched in an integrated manner from one input box. Furthermore, UKPMC contains 'Cited By' information as an alternative way to navigate the literature and has incorporated text-mining approaches to semantically enrich content and integrate it with related database resources. Finally, UKPMC also offers added-value services (UKPMC+) that enable grantees to deposit manuscripts, link papers to grants, publish online portfolios and view citation information on their papers. Here we describe UKPMC and clarify the relationship between PMC and UKPMC, providing historical context and future directions, 10 years on from when PMC was first launched.

  9. Extractive text summarization system to aid data extraction from full text in systematic review development.

    Science.gov (United States)

    Bui, Duy Duc An; Del Fiol, Guilherme; Hurdle, John F; Jonnalagadda, Siddhartha

    2016-12-01

    Extracting data from publication reports is a standard process in systematic review (SR) development. However, the data extraction process still relies too much on manual effort which is slow, costly, and subject to human error. In this study, we developed a text summarization system aimed at enhancing productivity and reducing errors in the traditional data extraction process. We developed a computer system that used machine learning and natural language processing approaches to automatically generate summaries of full-text scientific publications. The summaries at the sentence and fragment levels were evaluated in finding common clinical SR data elements such as sample size, group size, and PICO values. We compared the computer-generated summaries with human written summaries (title and abstract) in terms of the presence of necessary information for the data extraction as presented in the Cochrane review's study characteristics tables. At the sentence level, the computer-generated summaries covered more information than humans do for systematic reviews (recall 91.2% vs. 83.8%, p<0.001). They also had a better density of relevant sentences (precision 59% vs. 39%, p<0.001). At the fragment level, the ensemble approach combining rule-based, concept mapping, and dictionary-based methods performed better than individual methods alone, achieving an 84.7% F-measure. Computer-generated summaries are potential alternative information sources for data extraction in systematic review development. Machine learning and natural language processing are promising approaches to the development of such an extractive summarization system. Copyright © 2016 Elsevier Inc. All rights reserved.

  10. Text analysis methods, text analysis apparatuses, and articles of manufacture

    Science.gov (United States)

    Whitney, Paul D; Willse, Alan R; Lopresti, Charles A; White, Amanda M

    2014-10-28

    Text analysis methods, text analysis apparatuses, and articles of manufacture are described according to some aspects. In one aspect, a text analysis method includes accessing information indicative of data content of a collection of text comprising a plurality of different topics, using a computing device, analyzing the information indicative of the data content, and using results of the analysis, identifying a presence of a new topic in the collection of text.

  11. A Proposed Arabic Handwritten Text Normalization Method

    Directory of Open Access Journals (Sweden)

    Tarik Abu-Ain

    2014-11-01

    Full Text Available Text normalization is an important technique in document image analysis and recognition. It consists of many preprocessing stages, which include slope correction, text padding, skew correction, and straight the writing line. In this side, text normalization has an important role in many procedures such as text segmentation, feature extraction and characters recognition. In the present article, a new method for text baseline detection, straightening, and slant correction for Arabic handwritten texts is proposed. The method comprises a set of sequential steps: first components segmentation is done followed by components text thinning; then, the direction features of the skeletons are extracted, and the candidate baseline regions are determined. After that, selection of the correct baseline region is done, and finally, the baselines of all components are aligned with the writing line.  The experiments are conducted on IFN/ENIT benchmark Arabic dataset. The results show that the proposed method has a promising and encouraging performance.

  12. Full text clustering and relationship network analysis of biomedical publications.

    Science.gov (United States)

    Guan, Renchu; Yang, Chen; Marchese, Maurizio; Liang, Yanchun; Shi, Xiaohu

    2014-01-01

    Rapid developments in the biomedical sciences have increased the demand for automatic clustering of biomedical publications. In contrast to current approaches to text clustering, which focus exclusively on the contents of abstracts, a novel method is proposed for clustering and analysis of complete biomedical article texts. To reduce dimensionality, Cosine Coefficient is used on a sub-space of only two vectors, instead of computing the Euclidean distance within the space of all vectors. Then a strategy and algorithm is introduced for Semi-supervised Affinity Propagation (SSAP) to improve analysis efficiency, using biomedical journal names as an evaluation background. Experimental results show that by avoiding high-dimensional sparse matrix computations, SSAP outperforms conventional k-means methods and improves upon the standard Affinity Propagation algorithm. In constructing a directed relationship network and distribution matrix for the clustering results, it can be noted that overlaps in scope and interests among BioMed publications can be easily identified, providing a valuable analytical tool for editors, authors and readers.

  13. Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.

    Science.gov (United States)

    Garten, Yael; Altman, Russ B

    2009-02-05

    Pharmacogenomics studies the relationship between genetic variation and the variation in drug response phenotypes. The field is rapidly gaining importance: it promises drugs targeted to particular subpopulations based on genetic background. The pharmacogenomics literature has expanded rapidly, but is dispersed in many journals. It is challenging, therefore, to identify important associations between drugs and molecular entities--particularly genes and gene variants, and thus these critical connections are often lost. Text mining techniques can allow us to convert the free-style text to a computable, searchable format in which pharmacogenomic concepts (such as genes, drugs, polymorphisms, and diseases) are identified, and important links between these concepts are recorded. Availability of full text articles as input into text mining engines is key, as literature abstracts often do not contain sufficient information to identify these pharmacogenomic associations. Thus, building on a tool called Textpresso, we have created the Pharmspresso tool to assist in identifying important pharmacogenomic facts in full text articles. Pharmspresso parses text to find references to human genes, polymorphisms, drugs and diseases and their relationships. It presents these as a series of marked-up text fragments, in which key concepts are visually highlighted. To evaluate Pharmspresso, we used a gold standard of 45 human-curated articles. Pharmspresso identified 78%, 61%, and 74% of target gene, polymorphism, and drug concepts, respectively. Pharmspresso is a text analysis tool that extracts pharmacogenomic concepts from the literature automatically and thus captures our current understanding of gene-drug interactions in a computable form. We have made Pharmspresso available at http://pharmspresso.stanford.edu.

  14. Classification of protein-protein interaction full-text documents using text and citation network features.

    Science.gov (United States)

    Kolchinsky, Artemy; Abi-Haidar, Alaa; Kaur, Jasleen; Hamed, Ahmed Abdeen; Rocha, Luis M

    2010-01-01

    We participated (as Team 9) in the Article Classification Task of the Biocreative II.5 Challenge: binary classification of full-text documents relevant for protein-protein interaction. We used two distinct classifiers for the online and offline challenges: 1) the lightweight Variable Trigonometric Threshold (VTT) linear classifier we successfully introduced in BioCreative 2 for binary classification of abstracts and 2) a novel Naive Bayes classifier using features from the citation network of the relevant literature. We supplemented the supplied training data with full-text documents from the MIPS database. The lightweight VTT classifier was very competitive in this new full-text scenario: it was a top-performing submission in this task, taking into account the rank product of the Area Under the interpolated precision and recall Curve, Accuracy, Balanced F-Score, and Matthew's Correlation Coefficient performance measures. The novel citation network classifier for the biomedical text mining domain, while not a top performing classifier in the challenge, performed above the central tendency of all submissions, and therefore indicates a promising new avenue to investigate further in bibliome informatics.

  15. A text-mining system for extracting metabolic reactions from full-text articles.

    Science.gov (United States)

    Czarnecki, Jan; Nobeli, Irene; Smith, Adrian M; Shepherd, Adrian J

    2012-07-23

    Increasingly biological text mining research is focusing on the extraction of complex relationships relevant to the construction and curation of biological networks and pathways. However, one important category of pathway - metabolic pathways - has been largely neglected.Here we present a relatively simple method for extracting metabolic reaction information from free text that scores different permutations of assigned entities (enzymes and metabolites) within a given sentence based on the presence and location of stemmed keywords. This method extends an approach that has proved effective in the context of the extraction of protein-protein interactions. When evaluated on a set of manually-curated metabolic pathways using standard performance criteria, our method performs surprisingly well. Precision and recall rates are comparable to those previously achieved for the well-known protein-protein interaction extraction task. We conclude that automated metabolic pathway construction is more tractable than has often been assumed, and that (as in the case of protein-protein interaction extraction) relatively simple text-mining approaches can prove surprisingly effective. It is hoped that these results will provide an impetus to further research and act as a useful benchmark for judging the performance of more sophisticated methods that are yet to be developed.

  16. Full text

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    release of intracellular myocyte components. Clinical sequelae to rhabdomyolysis include hypovolemia, hyperkalemia, metabolic acidosis and acute renal failure which is the most serious complication. Renal failure is caused by renal vasoconstriction, myoglobin and heme protein toxicity. Usual explanations of the cause of.

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    Case presentation. A seventy five year old Libyan man was seen in the urology department of Tripoli Medical Centre, Tripoli, Libya with six month history of left loin pain. The patient noted a mass in the left loin two days before he was assessed in the hospital. Also he started to vomit. There was no history of haematuria.

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    impact of using a robotic dispensing machine in community pharmacies was gathered using a structured questionnaire and analysed in ... dispensing time was also shorter and staff satisfaction increased. ... reference customers who were using a ROWA robotic .... Costs situation Purchase price Stock value Personnel costs.

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    –60 years, in Al-Jala Women Hospital in. Tripoli, Libya. Haemoglobin concentration was measured using an automated haematology analyzer. ... i.e. by relatives and friends of the patient needing blood. A .... More attention should be given.

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    2009-07-20

    Jul 20, 2009 ... Table 1: Influenza pandemics of the 20th and 21st century. Name of ... could be responsible for the rapid human -to- human transmission [21]. Using evolutionary analysis to estimate the timescale of the origins, Smith and his research team from The. University of ... The biology of influenza A viruses is very.

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    2009-01-11

    Jan 11, 2009 ... battery, retail for approximately £30GBP although bulk buying ..... care to store them carefully. Electrode costs .... nerve stimulation does not relieve in labour pain: updated ... (Online : Update Software), 2003(3): p. CD003222.

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    Abstract; The detection of single base mismatches in DNA is important for diagnostics, treatment of ... nucleic acid detectors, and show how such exciplexes can register the presence of .... Titration experiments were carried out using a stock.

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    from Turkey, Mexico, Brazil, USA, and Spain determined some criteria in favor ... female gender, and higher level of education. [9-14]. ... teachers and/or workers in that facility. Then a random ..... Psychosocial profile in favor of organ donation.

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    fishermen were enrolled at three Marine stations in Basra, Iraq. Demographic data, types .... that are used to sting and kill their prey or for defense. ... cardiotoxic, and dermatonecrotic toxins [1,6]. Figure 3: 4 ... May last a few weeks. The hands ...

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    2009-05-03

    May 3, 2009 ... The patient made an uneventful recovery. The final histopathology report was consistent with metastatic renal carcinoma. The patient was referred to the oncologist but unfortunately defaulted further treatment. . She is currently well and disease free 24 months after metastatectomy. Electronic PDF security ...

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    healing process when wound tensile strength is very low or absent (days 0-30). It is during this time, when .... and two (4.5%) were supraumbilical. Table 1: Age distribution and the outcome of surgery in the 44 women with incisional hernia. Variable. Frequency. Percentage. Age. 60. 9. 15. 10. 6. 4.

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    Original Article. Effects of Gender and Seasonal Variation on the Prevalence of. Bacterial Septicaemia Among Young Children in Benin City,. Nigeria. Omoregie R1,2, Egbe CA2, Ogefere HO1,3, Igbarumah I2, Omijie RE2. 1School of Medical Laboratory Sciences, 2Department of Medical Microbiology, University of Benin.

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    Figure 2 axial CT section with contrast media showing extension of lesion. Figure 3 Photomicrograph revealing many dilated cavernous lymphatic channels filled with eosinophilic coagulum. (Haematoxylin and Eosin section Orginal magnification 40 X). Discussion. Cystic hygroma, known as cystic lymphangioma is a.

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    Abstract; The expression of EGFR and p53 has not been adequately studied as a prognostic tool in urinary bladder tumors. We analyzed 74 bladder cancer samples from Egypt for EGFR and p53 expression using immunohistochemistry. The tumors .... have some potential value in differential diagnosis of problem cases, but ...

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    receptor; TNF-α: Tumor Necrosis Factor–alpha; TGF-β1: transforming growth factor-β1. INTRODUCTION .... hormones that mediate inflammatory and immune responses in a ..... score, lactate, and base deficit), as well as treatment with agents ...

  11. Facilitating Full-text Access to Biomedical Literature Using Open Access Resources.

    Science.gov (United States)

    Kang, Hongyu; Hou, Zhen; Li, Jiao

    2015-01-01

    Open access (OA) resources and local libraries often have their own literature databases, especially in the field of biomedicine. We have developed a method of linking a local library to a biomedical OA resource facilitating researchers' full-text article access. The method uses a model based on vector space to measure similarities between two articles in local library and OA resources. The method achieved an F-score of 99.61%. This method of article linkage and mapping between local library and OA resources is available for use. Through this work, we have improved the full-text access of the biomedical OA resources.

  12. Building a protein name dictionary from full text: a machine learning term extraction approach

    Directory of Open Access Journals (Sweden)

    Campagne Fabien

    2005-04-01

    Full Text Available Abstract Background The majority of information in the biological literature resides in full text articles, instead of abstracts. Yet, abstracts remain the focus of many publicly available literature data mining tools. Most literature mining tools rely on pre-existing lexicons of biological names, often extracted from curated gene or protein databases. This is a limitation, because such databases have low coverage of the many name variants which are used to refer to biological entities in the literature. Results We present an approach to recognize named entities in full text. The approach collects high frequency terms in an article, and uses support vector machines (SVM to identify biological entity names. It is also computationally efficient and robust to noise commonly found in full text material. We use the method to create a protein name dictionary from a set of 80,528 full text articles. Only 8.3% of the names in this dictionary match SwissProt description lines. We assess the quality of the dictionary by studying its protein name recognition performance in full text. Conclusion This dictionary term lookup method compares favourably to other published methods, supporting the significance of our direct extraction approach. The method is strong in recognizing name variants not found in SwissProt.

  13. Extracting Characteristics of the Study Subjects from Full-Text Articles.

    Science.gov (United States)

    Demner-Fushman, Dina; Mork, James G

    Characteristics of the subjects of biomedical research are important in determining if a publication describing the research is relevant to a search. To facilitate finding relevant publications, MEDLINE citations provide Medical Subject Headings that describe the subjects' characteristics, such as their species, gender, and age. We seek to improve the recommendation of these headings by the Medical Text Indexer (MTI) that supports manual indexing of MEDLINE. To that end, we explore the potential of the full text of the publications. Using simple recall-oriented rule-based methods we determined that adding sentences extracted from the methods sections and captions to the abstracts prior to MTI processing significantly improved recall and F1 score with only a slight drop in precision. Improvements were also achieved in directly assigning several headings extracted from the full text. These results indicate the need for further development of automated methods capable of leveraging the full text for indexing.

  14. MeSH: a window into full text for document summarization.

    Science.gov (United States)

    Bhattacharya, Sanmitra; Ha-Thuc, Viet; Srinivasan, Padmini

    2011-07-01

    Previous research in the biomedical text-mining domain has historically been limited to titles, abstracts and metadata available in MEDLINE records. Recent research initiatives such as TREC Genomics and BioCreAtIvE strongly point to the merits of moving beyond abstracts and into the realm of full texts. Full texts are, however, more expensive to process not only in terms of resources needed but also in terms of accuracy. Since full texts contain embellishments that elaborate, contextualize, contrast, supplement, etc., there is greater risk for false positives. Motivated by this, we explore an approach that offers a compromise between the extremes of abstracts and full texts. Specifically, we create reduced versions of full text documents that contain only important portions. In the long-term, our goal is to explore the use of such summaries for functions such as document retrieval and information extraction. Here, we focus on designing summarization strategies. In particular, we explore the use of MeSH terms, manually assigned to documents by trained annotators, as clues to select important text segments from the full text documents. Our experiments confirm the ability of our approach to pick the important text portions. Using the ROUGE measures for evaluation, we were able to achieve maximum ROUGE-1, ROUGE-2 and ROUGE-SU4 F-scores of 0.4150, 0.1435 and 0.1782, respectively, for our MeSH term-based method versus the maximum baseline scores of 0.3815, 0.1353 and 0.1428, respectively. Using a MeSH profile-based strategy, we were able to achieve maximum ROUGE F-scores of 0.4320, 0.1497 and 0.1887, respectively. Human evaluation of the baselines and our proposed strategies further corroborates the ability of our method to select important sentences from the full texts. sanmitra-bhattacharya@uiowa.edu; padmini-srinivasan@uiowa.edu.

  15. SERVICES OF FULL-TEXT SEARCHING IN A DISTRIBUTED INFORMATION ENVIRONMENT (PROJECT HUMANITARIANA

    Directory of Open Access Journals (Sweden)

    S. K. Lyapin

    2015-01-01

    Full Text Available Problem statement. We justify the possibility of full-text search services application in both universal and specialized (in terms of resource base digital libraries for the extraction and analysis of the context knowledge in the humanities. The architecture and services of virtual information and resource center for extracting knowledge from the humanitarian texts generated by «Humanitariana» project are described. The functional integration of the resources and services for a full-text search in a distributed decentralized environment, organized in the Internet / Intranet architecture under the control of the client (user browser accessing a variety of independent servers. An algorithm for a distributed full-text query implementation is described. Methods. Method of combining requency-ranked and paragraph-oriented full-text queries is used: the first are used for the preliminary analysis of the subject area or a combination product (explication of "vertical" context, or macro context, the second - for the explication of "horizontal" context, or micro context within copyright paragraph. The results of the frequency-ranked queries are used to compile paragraph-oriented queries. Results. The results of textual research are shown on the topics "The question of fact in Russian philosophy", "The question of loneliness in Russian philosophy and culture". About 50 pieces of context knowledge on the total resource base of about 2,500 full-text resources have been explicated and briefly described to their further expert investigating. Practical significance. The proposed technology (advanced full-text searching services in a distributed information environment can be used for the information support of humanitarian studies and education in the humanities, for functional integration of resources and services of various organizations, for carrying out interdisciplinary research.

  16. Evaluating Open-Source Full-Text Search Engines for Matching ICD-10 Codes.

    Science.gov (United States)

    Jurcău, Daniel-Alexandru; Stoicu-Tivadar, Vasile

    2016-01-01

    This research presents the results of evaluating multiple free, open-source engines on matching ICD-10 diagnostic codes via full-text searches. The study investigates what it takes to get an accurate match when searching for a specific diagnostic code. For each code the evaluation starts by extracting the words that make up its text and continues with building full-text search queries from the combinations of these words. The queries are then run against all the ICD-10 codes until a match indicates the code in question as a match with the highest relative score. This method identifies the minimum number of words that must be provided in order for the search engines choose the desired entry. The engines analyzed include a popular Java-based full-text search engine, a lightweight engine written in JavaScript which can even execute on the user's browser, and two popular open-source relational database management systems.

  17. Endnote Referencing Software: Importing references from an Ebsco database, attaching full text, organising your Endnote library

    OpenAIRE

    Turner, Susan

    2017-01-01

    This video demonstrates importing bibliographic references from EBSCO Discovery Service, the same method can be used for all EBSCO databases. \\ud The video also demonstrates how to attach full text files to the references and how to organise your references within the endnote library using groups.

  18. A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.

    Science.gov (United States)

    Westergaard, David; Stærfeldt, Hans-Henrik; Tønsberg, Christian; Jensen, Lars Juhl; Brunak, Søren

    2018-02-01

    Across academia and industry, text mining has become a popular strategy for keeping up with the rapid growth of the scientific literature. Text mining of the scientific literature has mostly been carried out on collections of abstracts, due to their availability. Here we present an analysis of 15 million English scientific full-text articles published during the period 1823-2016. We describe the development in article length and publication sub-topics during these nearly 250 years. We showcase the potential of text mining by extracting published protein-protein, disease-gene, and protein subcellular associations using a named entity recognition system, and quantitatively report on their accuracy using gold standard benchmark data sets. We subsequently compare the findings to corresponding results obtained on 16.5 million abstracts included in MEDLINE and show that text mining of full-text articles consistently outperforms using abstracts only.

  19. A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

    Science.gov (United States)

    Westergaard, David; Stærfeldt, Hans-Henrik

    2018-01-01

    Across academia and industry, text mining has become a popular strategy for keeping up with the rapid growth of the scientific literature. Text mining of the scientific literature has mostly been carried out on collections of abstracts, due to their availability. Here we present an analysis of 15 million English scientific full-text articles published during the period 1823–2016. We describe the development in article length and publication sub-topics during these nearly 250 years. We showcase the potential of text mining by extracting published protein–protein, disease–gene, and protein subcellular associations using a named entity recognition system, and quantitatively report on their accuracy using gold standard benchmark data sets. We subsequently compare the findings to corresponding results obtained on 16.5 million abstracts included in MEDLINE and show that text mining of full-text articles consistently outperforms using abstracts only. PMID:29447159

  20. A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

    DEFF Research Database (Denmark)

    Westergaard, David; Stærfeldt, Hans Henrik; Tønsberg, Christian

    2018-01-01

    Across academia and industry, text mining has become a popular strategy for keeping up with the rapid growth of the scientific literature. Text mining of the scientific literature has mostly been carried out on collections of abstracts, due to their availability. Here we present an analysis of 15...... subcellular associations using a named entity recognition system, and quantitatively report on their accuracy using gold standard benchmark data sets. We subsequently compare the findings to corresponding results obtained on 16.5 million abstracts included in MEDLINE and show that text mining of full...... million English scientific full-text articles published during the period 1823-2016. We describe the development in article length and publication sub-topics during these nearly 250 years. We showcase the potential of text mining by extracting published protein-protein, disease-gene, and protein...

  1. Robust keyword retrieval method for OCRed text

    Science.gov (United States)

    Fujii, Yusaku; Takebe, Hiroaki; Tanaka, Hiroshi; Hotta, Yoshinobu

    2011-01-01

    Document management systems have become important because of the growing popularity of electronic filing of documents and scanning of books, magazines, manuals, etc., through a scanner or a digital camera, for storage or reading on a PC or an electronic book. Text information acquired by optical character recognition (OCR) is usually added to the electronic documents for document retrieval. Since texts generated by OCR generally include character recognition errors, robust retrieval methods have been introduced to overcome this problem. In this paper, we propose a retrieval method that is robust against both character segmentation and recognition errors. In the proposed method, the insertion of noise characters and dropping of characters in the keyword retrieval enables robustness against character segmentation errors, and character substitution in the keyword of the recognition candidate for each character in OCR or any other character enables robustness against character recognition errors. The recall rate of the proposed method was 15% higher than that of the conventional method. However, the precision rate was 64% lower.

  2. Full-text automated detection of surgical site infections secondary to neurosurgery in Rennes, France.

    Science.gov (United States)

    Campillo-Gimenez, Boris; Garcelon, Nicolas; Jarno, Pascal; Chapplain, Jean Marc; Cuggia, Marc

    2013-01-01

    The surveillance of Surgical Site Infections (SSI) contributes to the management of risk in French hospitals. Manual identification of infections is costly, time-consuming and limits the promotion of preventive procedures by the dedicated teams. The introduction of alternative methods using automated detection strategies is promising to improve this surveillance. The present study describes an automated detection strategy for SSI in neurosurgery, based on textual analysis of medical reports stored in a clinical data warehouse. The method consists firstly, of enrichment and concept extraction from full-text reports using NOMINDEX, and secondly, text similarity measurement using a vector space model. The text detection was compared to the conventional strategy based on self-declaration and to the automated detection using the diagnosis-related group database. The text-mining approach showed the best detection accuracy, with recall and precision equal to 92% and 40% respectively, and confirmed the interest of reusing full-text medical reports to perform automated detection of SSI.

  3. Methods for Mining and Summarizing Text Conversations

    CERN Document Server

    Carenini, Giuseppe; Murray, Gabriel

    2011-01-01

    Due to the Internet Revolution, human conversational data -- in written forms -- are accumulating at a phenomenal rate. At the same time, improvements in speech technology enable many spoken conversations to be transcribed. Individuals and organizations engage in email exchanges, face-to-face meetings, blogging, texting and other social media activities. The advances in natural language processing provide ample opportunities for these "informal documents" to be analyzed and mined, thus creating numerous new and valuable applications. This book presents a set of computational methods

  4. The Flip Sides of Full-Text: Superindex and the Harvard Business Review/Online.

    Science.gov (United States)

    Dadlez, Eva M.

    1984-01-01

    This article illustrates similarities between two different types of full-text databases--Superindex, Harvard Business Review/Online--and uses them as arena to demonstrate search and display applications of full-text. The selection of logical operators, full-text search strategies, and keywords and Bibliographic Retrieval Service's Occurrence…

  5. Understanding disciplinary vocabularies using a full-text enabled domain-independent term extraction approach.

    Science.gov (United States)

    Yan, Erjia; Williams, Jake; Chen, Zheng

    2017-01-01

    Publication metadata help deliver rich analyses of scholarly communication. However, research concepts and ideas are more effectively expressed through unstructured fields such as full texts. Thus, the goals of this paper are to employ a full-text enabled method to extract terms relevant to disciplinary vocabularies, and through them, to understand the relationships between disciplines. This paper uses an efficient, domain-independent term extraction method to extract disciplinary vocabularies from a large multidisciplinary corpus of PLoS ONE publications. It finds a power-law pattern in the frequency distributions of terms present in each discipline, indicating a semantic richness potentially sufficient for further study and advanced analysis. The salient relationships amongst these vocabularies become apparent in application of a principal component analysis. For example, Mathematics and Computer and Information Sciences were found to have similar vocabulary use patterns along with Engineering and Physics; while Chemistry and the Social Sciences were found to exhibit contrasting vocabulary use patterns along with the Earth Sciences and Chemistry. These results have implications to studies of scholarly communication as scholars attempt to identify the epistemological cultures of disciplines, and as a full text-based methodology could lead to machine learning applications in the automated classification of scholarly work according to disciplinary vocabularies.

  6. Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles.

    Science.gov (United States)

    Blake, Catherine

    2010-04-01

    Massive increases in electronically available text have spurred a variety of natural language processing methods to automatically identify relationships from text; however, existing annotated collections comprise only bioinformatics (gene-protein) or clinical informatics (treatment-disease) relationships. This paper introduces the Claim Framework that reflects how authors across biomedical spectrum communicate findings in empirical studies. The Framework captures different levels of evidence by differentiating between explicit and implicit claims, and by capturing under-specified claims such as correlations, comparisons, and observations. The results from 29 full-text articles show that authors report fewer than 7.84% of scientific claims in an abstract, thus revealing the urgent need for text mining systems to consider the full-text of an article rather than just the abstract. The results also show that authors typically report explicit claims (77.12%) rather than an observations (9.23%), correlations (5.39%), comparisons (5.11%) or implicit claims (2.7%). Informed by the initial manual annotations, we introduce an automated approach that uses syntax and semantics to identify explicit claims automatically and measure the degree to which each feature contributes to the overall precision and recall. Results show that a combination of semantics and syntax is required to achieve the best system performance. 2009 Elsevier Inc. All rights reserved.

  7. Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles.

    Science.gov (United States)

    Kafkas, Şenay; Kim, Jee-Hyub; Pi, Xingjun; McEntyre, Johanna R

    2015-01-01

    In this study, we present an analysis of data citation practices in full text research articles and their corresponding supplementary data files, made available in the Open Access set of articles from Europe PubMed Central. Our aim is to investigate whether supplementary data files should be considered as a source of information for integrating the literature with biomolecular databases. Using text-mining methods to identify and extract a variety of core biological database accession numbers, we found that the supplemental data files contain many more database citations than the body of the article, and that those citations often take the form of a relatively small number of articles citing large collections of accession numbers in text-based files. Moreover, citation of value-added databases derived from submission databases (such as Pfam, UniProt or Ensembl) is common, demonstrating the reuse of these resources as datasets in themselves. All the database accession numbers extracted from the supplementary data are publicly accessible from http://dx.doi.org/10.5281/zenodo.11771. Our study suggests that supplementary data should be considered when linking articles with data, in curation pipelines, and in information retrieval tasks in order to make full use of the entire research article. These observations highlight the need to improve the management of supplemental data in general, in order to make this information more discoverable and useful.

  8. Searching Harvard Business Review Online. . . Lessons in Searching a Full Text Database.

    Science.gov (United States)

    Tenopir, Carol

    1985-01-01

    This article examines the Harvard Business Review Online (HBRO) database (bibliographic description fields, abstracts, extracted information, full text, subject descriptors) and reports on 31 sample HBRO searches conducted in Bibliographic Retrieval Services to test differences between searching full text and searching bibliographic record. Sample…

  9. Full-Text Linking: Affiliated versus Nonaffiliated Access in a Free Database.

    Science.gov (United States)

    Grogg, Jill E.; Andreadis, Debra K.; Kirk, Rachel A.

    2002-01-01

    Presents a comparison of access to full-text articles from a free bibliographic database (PubSCIENCE) for affiliated and unaffiliated users. Found that affiliated users had access to more full-text articles than unaffiliated users had, and that both types of users could increase their level of access through additional searching and greater…

  10. tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

    Science.gov (United States)

    Cejuela, Juan Miguel; McQuilton, Peter; Ponting, Laura; Marygold, Steven J; Stefancsik, Raymund; Millburn, Gillian H; Rost, Burkhard

    2014-01-01

    The breadth and depth of biomedical literature are increasing year upon year. To keep abreast of these increases, FlyBase, a database for Drosophila genomic and genetic information, is constantly exploring new ways to mine the published literature to increase the efficiency and accuracy of manual curation and to automate some aspects, such as triaging and entity extraction. Toward this end, we present the 'tagtog' system, a web-based annotation framework that can be used to mark up biological entities (such as genes) and concepts (such as Gene Ontology terms) in full-text articles. tagtog leverages manual user annotation in combination with automatic machine-learned annotation to provide accurate identification of gene symbols and gene names. As part of the BioCreative IV Interactive Annotation Task, FlyBase has used tagtog to identify and extract mentions of Drosophila melanogaster gene symbols and names in full-text biomedical articles from the PLOS stable of journals. We show here the results of three experiments with different sized corpora and assess gene recognition performance and curation speed. We conclude that tagtog-named entity recognition improves with a larger corpus and that tagtog-assisted curation is quicker than manual curation. DATABASE URL: www.tagtog.net, www.flybase.org.

  11. Efficient extraction of protein-protein interactions from full-text articles.

    Science.gov (United States)

    Hakenberg, Jörg; Leaman, Robert; Vo, Nguyen Ha; Jonnalagadda, Siddhartha; Sullivan, Ryan; Miller, Christopher; Tari, Luis; Baral, Chitta; Gonzalez, Graciela

    2010-01-01

    Proteins and their interactions govern virtually all cellular processes, such as regulation, signaling, metabolism, and structure. Most experimental findings pertaining to such interactions are discussed in research papers, which, in turn, get curated by protein interaction databases. Authors, editors, and publishers benefit from efforts to alleviate the tasks of searching for relevant papers, evidence for physical interactions, and proper identifiers for each protein involved. The BioCreative II.5 community challenge addressed these tasks in a competition-style assessment to evaluate and compare different methodologies, to make aware of the increasing accuracy of automated methods, and to guide future implementations. In this paper, we present our approaches for protein-named entity recognition, including normalization, and for extraction of protein-protein interactions from full text. Our overall goal is to identify efficient individual components, and we compare various compositions to handle a single full-text article in between 10 seconds and 2 minutes. We propose strategies to transfer document-level annotations to the sentence-level, which allows for the creation of a more fine-grained training corpus; we use this corpus to automatically derive around 5,000 patterns. We rank sentences by relevance to the task of finding novel interactions with physical evidence, using a sentence classifier built from this training corpus. Heuristics for paraphrasing sentences help to further remove unnecessary information that might interfere with patterns, such as additional adjectives, clauses, or bracketed expressions. In BioCreative II.5, we achieved an f-score of 22 percent for finding protein interactions, and 43 percent for mapping proteins to UniProt IDs; disregarding species, f-scores are 30 percent and 55 percent, respectively. On average, our best-performing setup required around 2 minutes per full text. All data and pattern sets as well as Java classes that

  12. Full-text publication of abstract-presented work in sport and exercise psychology.

    Science.gov (United States)

    Shue, Sarah; Warden, Stuart

    2018-01-01

    Meetings promote information sharing, but do not enable full dissemination of details. A systematic search was conducted for abstracts presented at the 2010 and 2011 Association of Applied Sport Psychology Annual Conferences to determine the full-text dissemination rate of work presented in abstract form and investigate factors influencing this rate. Systematic searches were sequentially conducted to determine whether the abstract-presented work had been published in full-text format in the 5 years following presentation. If a potential full-text publication was identified, information from the conference abstract (eg, results, number of participants in the sample(s), measurement tools used and so on) was compared with the full text to ensure the two entities represented the same body of work. Abstract factors of interest were assessed using logistic regression. Ninety-four out of 423 presented abstracts (22.2%) were published in full text. Odds of full-text publication increased if the abstract was from an international institution, presented in certain conference sections or presented as a lecture. Those attending professional conferences should be cautious when translating data presented at conferences into their applied work because of the low rate of peer-reviewed and full-text publication of the information.

  13. Investigating and Annotating the Role of Citation in Biomedical Full-Text Articles.

    Science.gov (United States)

    Yu, Hong; Agarwal, Shashank; Frid, Nadya

    2009-11-01

    Citations are ubiquitous in scientific articles and play important roles for representing the semantic content of a full-text biomedical article. In this work, we manually examined full-text biomedical articles to analyze the semantic content of citations in full-text biomedical articles. After developing a citation relation schema and annotation guideline, our pilot annotation results show an overall agreement of 0.71, and here we report on the research challenges and the lessons we've learned while trying to overcome them. Our work is a first step toward automatic citation classification in full-text biomedical articles, which may contribute to many text mining tasks, including information retrieval, extraction, summarization, and question answering.

  14. Challenges for automatically extracting molecular interactions from full-text articles.

    Science.gov (United States)

    McIntosh, Tara; Curran, James R

    2009-09-24

    The increasing availability of full-text biomedical articles will allow more biomedical knowledge to be extracted automatically with greater reliability. However, most Information Retrieval (IR) and Extraction (IE) tools currently process only abstracts. The lack of corpora has limited the development of tools that are capable of exploiting the knowledge in full-text articles. As a result, there has been little investigation into the advantages of full-text document structure, and the challenges developers will face in processing full-text articles. We manually annotated passages from full-text articles that describe interactions summarised in a Molecular Interaction Map (MIM). Our corpus tracks the process of identifying facts to form the MIM summaries and captures any factual dependencies that must be resolved to extract the fact completely. For example, a fact in the results section may require a synonym defined in the introduction. The passages are also annotated with negated and coreference expressions that must be resolved.We describe the guidelines for identifying relevant passages and possible dependencies. The corpus includes 2162 sentences from 78 full-text articles. Our corpus analysis demonstrates the necessity of full-text processing; identifies the article sections where interactions are most commonly stated; and quantifies the proportion of interaction statements requiring coherent dependencies. Further, it allows us to report on the relative importance of identifying synonyms and resolving negated expressions. We also experiment with an oracle sentence retrieval system using the corpus as a gold-standard evaluation set. We introduce the MIM corpus, a unique resource that maps interaction facts in a MIM to annotated passages within full-text articles. It is an invaluable case study providing guidance to developers of biomedical IR and IE systems, and can be used as a gold-standard evaluation set for full-text IR tasks.

  15. Full-text publication of abstracts presented at European Orthodontic Society congresses.

    Science.gov (United States)

    Livas, Christos; Pandis, Nikolaos; Ren, Yijin

    2014-10-01

    Empirical evidence has indicated that only a subsample of studies conducted reach full-text publication and this phenomenon has become known as publication bias. A form of publication bias is the selectively delayed full publication of conference abstracts. The objective of this article was to examine the publication status of oral abstracts and poster-presentation abstracts, included in the scientific program of the 82nd and 83rd European Orthodontic Society (EOS) congresses, held in 2006 and 2007, and to identify factors associated with full-length publication. A systematic search of PubMed and Google Scholar databases was performed in April 2013 using author names and keywords from the abstract title to locate abstract and full-article publications. Information regarding mode of presentation, type of affiliation, geographical origin, statistical results, and publication details were collected and analyzed using univariable and multivariable logistic regression. Approximately 51 per cent of the EOS 2006 and 55 per cent of the EOS 2007 abstracts appeared in print more than 5 years post congress. A mean period of 1.32 years elapsed between conference and publication date. Mode of presentation (oral or poster), use of statistical analysis, and research subject area were significant predictors for publication success. Inherent discrepancies of abstract reporting, mainly related to presentation of preliminary results and incomplete description of methods, may be considered in analogous studies. On average 52.2 per cent of the abstracts presented at the two EOS conferences reached full publication. Abstracts presented orally, including statistical analysis, were more likely to get published. © The Author 2013. Published by Oxford University Press on behalf of the European Orthodontic Society. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  16. CCM: A Text Classification Method by Clustering

    DEFF Research Database (Denmark)

    Nizamani, Sarwat; Memon, Nasrullah; Wiil, Uffe Kock

    2011-01-01

    In this paper, a new Cluster based Classification Model (CCM) for suspicious email detection and other text classification tasks, is presented. Comparative experiments of the proposed model against traditional classification models and the boosting algorithm are also discussed. Experimental results...... show that the CCM outperforms traditional classification models as well as the boosting algorithm for the task of suspicious email detection on terrorism domain email dataset and topic categorization on the Reuters-21578 and 20 Newsgroups datasets. The overall finding is that applying a cluster based...

  17. Full-text publication of abstracts presented at European Orthodontic Society congresses

    NARCIS (Netherlands)

    Livas, Christos; Pandis, Nikolaos; Ren, Yijin

    2014-01-01

    INTRODUCTION: Empirical evidence has indicated that only a subsample of studies conducted reach full-text publication and this phenomenon has become known as publication bias. A form of publication bias is the selectively delayed full publication of conference abstracts. The objective of this

  18. The structural and content aspects of abstracts versus bodies of full text journal articles are different.

    Science.gov (United States)

    Cohen, K Bretonnel; Johnson, Helen L; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E

    2010-09-29

    An increase in work on the full text of journal articles and the growth of PubMedCentral have the opportunity to create a major paradigm shift in how biomedical text mining is done. However, until now there has been no comprehensive characterization of how the bodies of full text journal articles differ from the abstracts that until now have been the subject of most biomedical text mining research. We examined the structural and linguistic aspects of abstracts and bodies of full text articles, the performance of text mining tools on both, and the distribution of a variety of semantic classes of named entities between them. We found marked structural differences, with longer sentences in the article bodies and much heavier use of parenthesized material in the bodies than in the abstracts. We found content differences with respect to linguistic features. Three out of four of the linguistic features that we examined were statistically significantly differently distributed between the two genres. We also found content differences with respect to the distribution of semantic features. There were significantly different densities per thousand words for three out of four semantic classes, and clear differences in the extent to which they appeared in the two genres. With respect to the performance of text mining tools, we found that a mutation finder performed equally well in both genres, but that a wide variety of gene mention systems performed much worse on article bodies than they did on abstracts. POS tagging was also more accurate in abstracts than in article bodies. Aspects of structure and content differ markedly between article abstracts and article bodies. A number of these differences may pose problems as the text mining field moves more into the area of processing full-text articles. However, these differences also present a number of opportunities for the extraction of data types, particularly that found in parenthesized text, that is present in article bodies

  19. Early Career Researchers Demand Full-text and Rely on Google to Find Scholarly Sources

    Directory of Open Access Journals (Sweden)

    Richard Hayman

    2017-12-01

    Full Text Available A Review of: Nicholas, D., Boukacem-Zeghmouri, C., Rodríguez-Bravo, B., Xu, J., Watkinson, A., Abrizah, A., Herman, E., & Świgoń, M. (2017. Where and how early career researchers find scholarly information. Learned Publishing, 30(1, 19-29. http://dx.doi.org/10.1002/leap.1087 Abstract Objective – To examine the attitudes and information behaviours of early career researchers (ECRs when locating scholarly information. Design – Qualitative longitudinal study. Setting – Research participants from the United Kingdom, United States of America, China, France, Malaysia, Poland, and Spain. Subjects – A total 116 participants from various disciplines, aged 35 and younger, who were holding or had previously held a research position, but not in a tenured position. All participants held a doctorate or were in the process of earning one. Methods – Using structured interviews of 60-90 minutes, researchers asked 60 questions of each participant via face-to-face, Skype, or telephone interviews. The interview format and questions were formed via focus groups. Main Results – As part of a longitudinal project, results reported are limited to the first year of the study, and focused on three primary questions identified by the authors: where do ECRs find scholarly information, whether they use their smartphones to locate and read scholarly information, and what social media do they use to find scholarly information. Researchers describe how ECRs themselves interpreted the phrase scholarly information to primarily mean journal articles, while the researchers themselves had a much expanded definition to include professional and “scholarly contacts, ideas, and data” (p. 22. This research shows that Google and Google Scholar are widely used by ECRs for locating scholarly information regardless of discipline, language, or geography. Their analysis by country points to currency and the combined breadth-and-depth search experience that Google provides as

  20. The Searchbench - Combining Sentence-semantic, Full-text and Bibliographic Search in Digital Libraries

    Directory of Open Access Journals (Sweden)

    Ulrich Schäfer

    2013-02-01

    Full Text Available We describe a novel approach to precise searching in the full content of digital libraries. The Searchbench (for search workbench is based on sentence-wise syntactic and semantic natural language processing (NLP of both born-digital and scanned publications in PDF format. The term born-digital means natively digital, i.e. prepared electronically using typesetting systems such as LaTeX, OpenOffice, and the like. In the Searchbench, queries can be formulated as (possibly underspecified statements, consisting of simple subject-predicate-object constructs such as ‘algorithm improves word alignment’. This reduces the number of false hits in large document collections when the search words happen to appear close to each other, but are not semantically related. The method also abstracts from passive voice and predicate synonyms. Moreover, negated statements can be excluded from the search results, and negated antonym predicates again count as synonyms (e.g. not include = exclude.In the Searchbench, a sentence-semantic search can be combined with search filters for classical full-text, bibliographic metadata and automatically computed domain terms. Auto-suggest fields facilitate text input. Queries can be bookmarked or emailed. Furthermore, a novel citation browser in the Searchbench allows graphical navigation in citation networks. These have been extracted automatically from metadata and paper texts. The citation browser displays short phrases from citation sentences at the edges in the citation graph and thus allows students and researchers to quickly browse publications and immerse into a new research field. By clicking on a citation edge, the original citation sentence is shown in context, and optionally also in the original PDF layout.To showcase the usefulness of our research, we have a applied it to a collection of currently approx. 25,000 open access research papers in the field of computational linguistics and language technology, the ACL

  1. Full text publication rates of studies presented at an international emergency medicine scientific meeting.

    Science.gov (United States)

    Chan, Jannet W M; Graham, Colin A

    2011-09-01

    The publication rate of full text papers following an abstract presentation at a medical conference is variable, and few studies have examined the situation with respect to international emergency medicine conferences. This retrospective study aimed to identify the publication rate of abstracts presented at the 2006 International Conference on Emergency Medicine (ICEM) held in Halifax, Canada. The full text publication rate was 33.2%, similar to previous emergency medicine meetings. English language barriers may play a role in the low publication rate seen.

  2. Improving e-book access via a library-developed full-text search tool.

    Science.gov (United States)

    Foust, Jill E; Bergen, Phillip; Maxeiner, Gretchen L; Pawlowski, Peter N

    2007-01-01

    This paper reports on the development of a tool for searching the contents of licensed full-text electronic book (e-book) collections. The Health Sciences Library System (HSLS) provides services to the University of Pittsburgh's medical programs and large academic health system. The HSLS has developed an innovative tool for federated searching of its e-book collections. Built using the XML-based Vivísimo development environment, the tool enables a user to perform a full-text search of over 2,500 titles from the library's seven most highly used e-book collections. From a single "Google-style" query, results are returned as an integrated set of links pointing directly to relevant sections of the full text. Results are also grouped into categories that enable more precise retrieval without reformulation of the search. A heuristic evaluation demonstrated the usability of the tool and a web server log analysis indicated an acceptable level of usage. Based on its success, there are plans to increase the number of online book collections searched. This library's first foray into federated searching has produced an effective tool for searching across large collections of full-text e-books and has provided a good foundation for the development of other library-based federated searching products.

  3. Improving e-book access via a library-developed full-text search tool*

    Science.gov (United States)

    Foust, Jill E.; Bergen, Phillip; Maxeiner, Gretchen L.; Pawlowski, Peter N.

    2007-01-01

    Purpose: This paper reports on the development of a tool for searching the contents of licensed full-text electronic book (e-book) collections. Setting: The Health Sciences Library System (HSLS) provides services to the University of Pittsburgh's medical programs and large academic health system. Brief Description: The HSLS has developed an innovative tool for federated searching of its e-book collections. Built using the XML-based Vivísimo development environment, the tool enables a user to perform a full-text search of over 2,500 titles from the library's seven most highly used e-book collections. From a single “Google-style” query, results are returned as an integrated set of links pointing directly to relevant sections of the full text. Results are also grouped into categories that enable more precise retrieval without reformulation of the search. Results/Evaluation: A heuristic evaluation demonstrated the usability of the tool and a web server log analysis indicated an acceptable level of usage. Based on its success, there are plans to increase the number of online book collections searched. Conclusion: This library's first foray into federated searching has produced an effective tool for searching across large collections of full-text e-books and has provided a good foundation for the development of other library-based federated searching products. PMID:17252065

  4. 10. National Nuclear Science and Technologies Congress Proceedings Full Texts Volume 1

    International Nuclear Information System (INIS)

    2009-01-01

    X. National Nuclear Science and Technologies Congress was held on 6-9 October 2009 in Mugla, Turkey in the course of collaborative organization undertaken by Turkish Atomic Energy Authority, Mugla University and Sitki Kocman Foundation. This first volume of Proceedings Book contains 75 submitted presentations and 36 of them are full texts on applications of nuclear techniques.

  5. Design of an On-Line Query Language for Full Text Patent Search.

    Science.gov (United States)

    Glantz, Richard S.

    The design of an English-like query language and an interactive computer environment for searching the full text of the U.S. patent collection are discussed. Special attention is paid to achieving a transparent user interface, to providing extremely broad search capabilities (including nested substitution classes, Kleene star events, and domain…

  6. Preparing College Students To Search Full-Text Databases: Is Instruction Necessary?

    Science.gov (United States)

    Riley, Cheryl; Wales, Barbara

    Full-text databases allow Central Missouri State University's clients to access some of the serials that libraries have had to cancel due to escalating subscription costs; EbscoHost, the subject of this study, is one such database. The database is available free to all Missouri residents. A survey was designed consisting of 21 questions intended…

  7. Full Text or Abstract? : Examining Topic Coherence Scores Using Latent Dirichlet Allocation

    NARCIS (Netherlands)

    Syed, S.; Spruit, M.

    2017-01-01

    This paper assesses topic coherence and human topic ranking of uncovered latent topics from scientific publications when utilizing the topic model latent Dirichlet allocation (LDA) on abstract and full-text data. The coherence of a topic, used as a proxy for topic quality, is based on the

  8. Retrieval of publications addressing shared decision making: an evaluation of full-text searches on medical journal websites.

    Science.gov (United States)

    Blanc, Xavier; Collet, Tinh-Hai; Auer, Reto; Iriarte, Pablo; Krause, Jan; Légaré, France; Cornuz, Jacques; Clair, Carole

    2015-04-07

    Full-text searches of articles increase the recall, defined by the proportion of relevant publications that are retrieved. However, this method is rarely used in medical research due to resource constraints. For the purpose of a systematic review of publications addressing shared decision making, a full-text search method was required to retrieve publications where shared decision making does not appear in the title or abstract. The objective of our study was to assess the efficiency and reliability of full-text searches in major medical journals for identifying shared decision making publications. A full-text search was performed on the websites of 15 high-impact journals in general internal medicine to look up publications of any type from 1996-2011 containing the phrase "shared decision making". The search method was compared with a PubMed search of titles and abstracts only. The full-text search was further validated by requesting all publications from the same time period from the individual journal publishers and searching through the collected dataset. The full-text search for "shared decision making" on journal websites identified 1286 publications in 15 journals compared to 119 through the PubMed search. The search within the publisher-provided publications of 6 journals identified 613 publications compared to 646 with the full-text search on the respective journal websites. The concordance rate was 94.3% between both full-text searches. Full-text searching on medical journal websites is an efficient and reliable way to identify relevant articles in the field of shared decision making for review or other purposes. It may be more widely used in biomedical research in other fields in the future, with the collaboration of publishers and journals toward open-access data.

  9. A Full-Text-Based Search Engine for Finding Highly Matched Documents Across Multiple Categories

    Science.gov (United States)

    Nguyen, Hung D.; Steele, Gynelle C.

    2016-01-01

    This report demonstrates the full-text-based search engine that works on any Web-based mobile application. The engine has the capability to search databases across multiple categories based on a user's queries and identify the most relevant or similar. The search results presented here were found using an Android (Google Co.) mobile device; however, it is also compatible with other mobile phones.

  10. Getting more out of biomedical documents with GATE's full lifecycle open source text analytics.

    Directory of Open Access Journals (Sweden)

    Hamish Cunningham

    Full Text Available This software article describes the GATE family of open source text analysis tools and processes. GATE is one of the most widely used systems of its type with yearly download rates of tens of thousands and many active users in both academic and industrial contexts. In this paper we report three examples of GATE-based systems operating in the life sciences and in medicine. First, in genome-wide association studies which have contributed to discovery of a head and neck cancer mutation association. Second, medical records analysis which has significantly increased the statistical power of treatment/outcome models in the UK's largest psychiatric patient cohort. Third, richer constructs in drug-related searching. We also explore the ways in which the GATE family supports the various stages of the lifecycle present in our examples. We conclude that the deployment of text mining for document abstraction or rich search and navigation is best thought of as a process, and that with the right computational tools and data collection strategies this process can be made defined and repeatable. The GATE research programme is now 20 years old and has grown from its roots as a specialist development tool for text processing to become a rather comprehensive ecosystem, bringing together software developers, language engineers and research staff from diverse fields. GATE now has a strong claim to cover a uniquely wide range of the lifecycle of text analysis systems. It forms a focal point for the integration and reuse of advances that have been made by many people (the majority outside of the authors' own group who work in text processing for biomedicine and other areas. GATE is available online under GNU open source licences and runs on all major operating systems. Support is available from an active user and developer community and also on a commercial basis.

  11. Full-text publication of abstracts in emergency medicine in Denmark

    DEFF Research Database (Denmark)

    Ravn, Anne Katrine; Petersen, Dan Brun; Folkestad, Lars

    2014-01-01

    INTRODUCTION: Abstracts presented at medical conferences or scientific meetings should ideally be published as full-text articles in peer-reviewed journals after initial presentation and feedback regardless of the findings. The aim of this survey was to determine the publication rate of papers...... similar publication rates. However, other more established specialties have higher publication levels. Knowledge of reasons for non-publication could lead to efforts to promote publication like funding; the possibility of discussion between authors and editors at conferences; "publication mentors"; and...

  12. The Establishment of the Chinese Full-text Electronic Periodical Database and Service System

    Directory of Open Access Journals (Sweden)

    Huei-Chu Chang

    2003-12-01

    Full Text Available A database covers important journals to critical mass, with powerful search interface, and easy for remote access is the most reasonable electronic resource for users. This article try to start from the project of digitizing bio-medical journals in Taiwan area to the CEPS, discuss the related issues about the selection of journals, the digitized of back issues, the copyright transfer from authors to database producers, the feedback to authors for payment from revenue. It also talks about the flow of journal publishing, marketing, function and the proposed cost-effectiveness in CEPS.[Article content in Chinese

  13. BC4GO: a full-text corpus for the BioCreative IV GO task.

    Science.gov (United States)

    Van Auken, Kimberly; Schaeffer, Mary L; McQuilton, Peter; Laulederkind, Stanley J F; Li, Donghui; Wang, Shur-Jen; Hayman, G Thomas; Tweedie, Susan; Arighi, Cecilia N; Done, James; Müller, Hans-Michael; Sternberg, Paul W; Mao, Yuqing; Wei, Chih-Hsuan; Lu, Zhiyong

    2014-01-01

    Gene function curation via Gene Ontology (GO) annotation is a common task among Model Organism Database groups. Owing to its manual nature, this task is considered one of the bottlenecks in literature curation. There have been many previous attempts at automatic identification of GO terms and supporting information from full text. However, few systems have delivered an accuracy that is comparable with humans. One recognized challenge in developing such systems is the lack of marked sentence-level evidence text that provides the basis for making GO annotations. We aim to create a corpus that includes the GO evidence text along with the three core elements of GO annotations: (i) a gene or gene product, (ii) a GO term and (iii) a GO evidence code. To ensure our results are consistent with real-life GO data, we recruited eight professional GO curators and asked them to follow their routine GO annotation protocols. Our annotators marked up more than 5000 text passages in 200 articles for 1356 distinct GO terms. For evidence sentence selection, the inter-annotator agreement (IAA) results are 9.3% (strict) and 42.7% (relaxed) in F1-measures. For GO term selection, the IAAs are 47% (strict) and 62.9% (hierarchical). Our corpus analysis further shows that abstracts contain ∼ 10% of relevant evidence sentences and 30% distinct GO terms, while the Results/Experiment section has nearly 60% relevant sentences and >70% GO terms. Further, of those evidence sentences found in abstracts, less than one-third contain enough experimental detail to fulfill the three core criteria of a GO annotation. This result demonstrates the need of using full-text articles for text mining GO annotations. Through its use at the BioCreative IV GO (BC4GO) task, we expect our corpus to become a valuable resource for the BioNLP research community. Database URL: http://www.biocreative.org/resources/corpora/bc-iv-go-task-corpus/. Published by Oxford University Press 2014. This work is written by US

  14. Using distant supervised learning to identify protein subcellular localizations from full-text scientific articles.

    Science.gov (United States)

    Zheng, Wu; Blake, Catherine

    2015-10-01

    Databases of curated biomedical knowledge, such as the protein-locations reflected in the UniProtKB database, provide an accurate and useful resource to researchers and decision makers. Our goal is to augment the manual efforts currently used to curate knowledge bases with automated approaches that leverage the increased availability of full-text scientific articles. This paper describes experiments that use distant supervised learning to identify protein subcellular localizations, which are important to understand protein function and to identify candidate drug targets. Experiments consider Swiss-Prot, the manually annotated subset of the UniProtKB protein knowledge base, and 43,000 full-text articles from the Journal of Biological Chemistry that contain just under 11.5 million sentences. The system achieves 0.81 precision and 0.49 recall at sentence level and an accuracy of 57% on held-out instances in a test set. Moreover, the approach identifies 8210 instances that are not in the UniProtKB knowledge base. Manual inspection of the 50 most likely relations showed that 41 (82%) were valid. These results have immediate benefit to researchers interested in protein function, and suggest that distant supervision should be explored to complement other manual data curation efforts. Copyright © 2015 Elsevier Inc. All rights reserved.

  15. Managing nuclear knowledge: IAEA activities and international coordination. Including resource material full text CD-ROM

    International Nuclear Information System (INIS)

    2005-06-01

    The present CD-ROM summarizes some activities carried out by the Departments of Nuclear Energy and Nuclear Safety and Security in the area of nuclear knowledge management in the period 2003-2005. It comprises, as open resource, most of the relevant documents in full text, including policy level documents, reports, presentation material by Member States and meeting summaries. The collection starts with a reprint of the report to the IAEA General Conference 2004 on Nuclear Knowledge [GOV/2004/56-GC(48)/12] summarizing the developments in nuclear knowledge management since the 47th session of the General Conference in 2003 and covers Managing Nuclear Knowledge including safety issues and Information and Strengthening Education and Training for Capacity Building. It contains an excerpt on Nuclear Knowledge from the General Conference Resolution [GC(48)/RES/13] on Strengthening the Agency's Activities Related to Nuclear Science, Technology and Applications. On the CD-ROM itself, all documents can easily be accessed by clicking on their titles on the subject pages (also printed at the end of this Working Material). Part 1 of the CD-ROM covers the activities in the period 2003-2005 and part 2 presents a resource material full text CD-ROM on Managing Nuclear Knowledge issued in October 2003

  16. Full-text publication of abstracts in emergency medicine in Denmark.

    Science.gov (United States)

    Ravn, Anne Katrine; Petersen, Dan Brun; Folkestad, Lars; Hallas, Peter; Brabrand, Mikkel

    2014-05-24

    Abstracts presented at medical conferences or scientific meetings should ideally be published as full-text articles in peer-reviewed journals after initial presentation and feedback regardless of the findings. The aim of this survey was to determine the publication rate of papers presented at the Danish Emergency Medicine Conferences in 2009, 2010 and 2011. Abstracts presented at the conferences were identified and authors contacted to obtain publication information. A further search was conducted using relevant databases. Publication rates for the 2009 and 2010 were approximately 30% (25-31.6%). The publication rate for the 2011 conference was 14.5% within 18 months with an additional 9% under review prior to publication. When comparing full-text publication rates from DEMC to previous international studies in EM Danish EM research community has similar publication rates. However, other more established specialties have higher publication levels. Knowledge of reasons for non-publication could lead to efforts to promote publication like funding; the possibility of discussion between authors and editors at conferences; "publication mentors"; and/or research courses provided by the Danish Society of Emergency Medicine.

  17. Large-scale extraction of gene interactions from full-text literature using DeepDive.

    Science.gov (United States)

    Mallory, Emily K; Zhang, Ce; Ré, Christopher; Altman, Russ B

    2016-01-01

    A complete repository of gene-gene interactions is key for understanding cellular processes, human disease and drug response. These gene-gene interactions include both protein-protein interactions and transcription factor interactions. The majority of known interactions are found in the biomedical literature. Interaction databases, such as BioGRID and ChEA, annotate these gene-gene interactions; however, curation becomes difficult as the literature grows exponentially. DeepDive is a trained system for extracting information from a variety of sources, including text. In this work, we used DeepDive to extract both protein-protein and transcription factor interactions from over 100,000 full-text PLOS articles. We built an extractor for gene-gene interactions that identified candidate gene-gene relations within an input sentence. For each candidate relation, DeepDive computed a probability that the relation was a correct interaction. We evaluated this system against the Database of Interacting Proteins and against randomly curated extractions. Our system achieved 76% precision and 49% recall in extracting direct and indirect interactions involving gene symbols co-occurring in a sentence. For randomly curated extractions, the system achieved between 62% and 83% precision based on direct or indirect interactions, as well as sentence-level and document-level precision. Overall, our system extracted 3356 unique gene pairs using 724 features from over 100,000 full-text articles. Application source code is publicly available at https://github.com/edoughty/deepdive_genegene_app russ.altman@stanford.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press.

  18. Full Text Searching and Customization in the NASA ADS Abstract Service

    Science.gov (United States)

    Eichhorn, G.; Accomazzi, A.; Grant, C. S.; Kurtz, M. J.; Henneken, E. A.; Thompson, D. M.; Murray, S. S.

    2004-01-01

    The NASA-ADS Abstract Service provides a sophisticated search capability for the literature in Astronomy, Planetary Sciences, Physics/Geophysics, and Space Instrumentation. The ADS is funded by NASA and access to the ADS services is free to anybody worldwide without restrictions. It allows the user to search the literature by author, title, and abstract text. The ADS database contains over 3.6 million references, with 965,000 in the Astronomy/Planetary Sciences database, and 1.6 million in the Physics/Geophysics database. 2/3 of the records have full abstracts, the rest are table of contents entries (titles and author lists only). The coverage for the Astronomy literature is better than 95% from 1975. Before that we cover all major journals and many smaller ones. Most of the journal literature is covered back to volume 1. We now get abstracts on a regular basis from most journals. Over the last year we have entered basically all conference proceedings tables of contents that are available at the Harvard Smithsonian Center for Astrophysics library. This has greatly increased the coverage of conference proceedings in the ADS. The ADS also covers the ArXiv Preprints. We download these preprints every night and index all the preprints. They can be searched either together with the other abstracts or separately. There are currently about 260,000 preprints in that database. In January 2004 we have introduced two new services, full text searching and a personal notification service called "myADS". As all other ADS services, these are free to use for anybody.

  19. Full-text publication of abstracts presented at meetings of a Latin American scientific society.

    Science.gov (United States)

    Dicembrino, Manuela; Anderson, Mariana; Vely, Ana Gabriela; Ossorio, María Fabiana; Ferrero, Fernando

    2014-12-01

    To estimate the proportion of abstracts presented at meetings of the Latin American Society for Pediatric Research that are fully-published, to describe the reasons for not publishing papers, and to assess the impact of funding on the publication rate. Abstracts presented at meetings held between 2005 and 2009 were included. Authors were contacted and invited to take a survey on the publication of their work or the reasons not to do it. Information was collected on 232 (71.4%) of the 325 abstracts presented. Of these, 58.6% were fully-published (136/232). Funded studies (40.0%) had more chances of publication (OR: 2.2; 95% CI: 1.2-3.9). "Lack of time" was the most common reason for failure to publish (35/96). 58.6% of abstracts presented at meetings of the Latin American Society for Pediatric Research, were published as full-text articles; lack of time was the most common reason for failure to publish. Funded research had more chances of being published.

  20. E2FM: an encrypted and compressed full-text index for collections of genomic sequences.

    Science.gov (United States)

    Montecuollo, Ferdinando; Schmid, Giovannni; Tagliaferri, Roberto

    2017-09-15

    Next Generation Sequencing (NGS) platforms and, more generally, high-throughput technologies are giving rise to an exponential growth in the size of nucleotide sequence databases. Moreover, many emerging applications of nucleotide datasets-as those related to personalized medicine-require the compliance with regulations about the storage and processing of sensitive data. We have designed and carefully engineered E 2 FM -index, a new full-text index in minute space which was optimized for compressing and encrypting nucleotide sequence collections in FASTA format and for performing fast pattern-search queries. E 2 FM -index allows to build self-indexes which occupy till to 1/20 of the storage required by the input FASTA file, thus permitting to save about 95% of storage when indexing collections of highly similar sequences; moreover, it can exactly search the built indexes for patterns in times ranging from few milliseconds to a few hundreds milliseconds, depending on pattern length. Source code is available at https://github.com/montecuollo/E2FM . ferdinando.montecuollo@unicampania.it. Supplementary data are available at Bioinformatics online. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

  1. Full text publication rates of papers presented at the British Foot and Ankle Society.

    Science.gov (United States)

    Marsland, D; Mumith, A; Taylor, H P

    2017-07-13

    Techniques in foot and ankle surgery have expanded rapidly in recent years, often presented at national society meetings. It is important that research is published to guide evidence based practice. Many abstracts however do not go on to full text publication. A database was created of all abstracts presented at BOFAS meetings from 2009 to 2013. Computerised searches were performed using PubMed and Google search engines. In total 341 papers were presented, with an overall publication rate of 31.7%. Of 251 clinical papers, 200 were case series (79.6%). Factors associated with publication success included basic science studies, papers related to arthroscopic surgery and research performed outside the UK. A relatively low conversion rate from presentation to publication could be as a result of papers failing to pass the scrutiny of peer review, or that the work is never formally submitted for publication. The information from this study could be used to prioritise future research and promote higher quality research. Copyright © 2017 European Foot and Ankle Society. Published by Elsevier Ltd. All rights reserved.

  2. Scholarly Electronic Full-Text Publications via the Internet: Issues and Impacts

    Science.gov (United States)

    Kosmin, Linda J.

    1999-01-01

    On-line access to complete texts of scholarly journal articles, conference papers, and books is facilitated by rapidly developing World-wide Web Internet access and capabilities. Meanwhile, print publications continue to be produced and read in spite of the proliferation of many networked electronic publications. The purpose of this presentation is to highlight fundamental issues impacting stakeholder groups, as the trend continues towards migration from paper to affordable ubiquitous networked full-text publications. Librarians, publishers, authors and end-users have various viewpoints, interests, and concerns. There are many issues challenging all stakeholder groups. For instance, all share concerns about administering copyright compliance and enforcing fair use. Uncontrollable electronic downstreaming could result in infringed copyright, while limiting a publisher's entitled revenue stream. Moreover, metered fee-based access may hamper scholarly information research. And, self-authoring on the Internet without peer filtering could lead to information clutter. Many related issues challenge librarians in particular. Among these are rising journal subscription prices, regardless if offered in print or electronic. Some electronic offerings are independent of print, others supplement or duplicate print; several publishers presently require subscribing to print in order to access electronic. Furthermore, numbers of publications are n'ow being marketed via the Internet directly to end-users, which can be viewed as encouraging users to bypass the traditional library. A key issue challenging publishers today is the rapidly expanding electronic user base that is demanding delivery of added-value full-text to desktop computers. Also of growing concern appears to be the decline in print sales to libraries, thereby reducing traditional revenue stream potential. Nowadays, publishers are more hesitant about investing in the production of publications geared toward small niche

  3. The consistency between scientific papers presented at the Orthopaedic Trauma Association and their subsequent full-text publication.

    Science.gov (United States)

    Preston, Charles F; Bhandari, Mohit; Fulkerson, Eric; Ginat, Danial; Egol, Kenneth A; Koval, Kenneth J

    2006-02-01

    To determine the consistency of conclusions/statements made in podium presentations at the annual meeting of the Orthopaedic Trauma Association (OTA) with those in subsequent full-text publications. Also, to evaluate the nature and consistency of study design, methods, sample sizes, results and assign a corresponding level of evidence. Abstracts of the scientific programs of the OTA from 1994 to 1997 (N = 254) were queried by using the PubMed database to identify those studies resulting in a peer-reviewed, full-text publication. Of the 169 articles retrieved, 137 studies were the basis of our study after the exclusion criteria were applied: non-English language, basic science studies, anatomic dissection studies, and articles published in non-peer-reviewed journals. Information was abstracted onto a data form: first from the abstract published in the final meeting program, and then from the published journal article. Information was recorded regarding study issues, including the study design, primary objective, sample size, and statistical methods. We provided descriptive statistics about the frequency of consistent results between abstracts and full-text publications. The results were recorded as percentages and a 95% confidence interval was applied to each value. Study results were recorded for the abstract and full-text publication comparing results and the overall conclusion. A level of scientific-based evidence was assigned to each full-text publication. The final conclusion of the study remained the same 93.4% of the time. The method of study was an observational case series 52% of the time and a statement regarding the rate of patient follow-up was reported 42% of the time. Of the studies published, 18.2% consisted of a sample size smaller than the previously presented abstract. When the published papers had their level of evidence graded, 11% were level I, 16% level II, 17% level III, and 56% level IV. Authors conclusions were consistent with those in full-text

  4. Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles

    Science.gov (United States)

    2011-01-01

    Background Experimentally verified protein-protein interactions (PPIs) cannot be easily retrieved by researchers unless they are stored in PPI databases. The curation of such databases can be facilitated by employing text-mining systems to identify genes which play the interactor role in PPIs and to map these genes to unique database identifiers (interactor normalization task or INT) and then to return a list of interaction pairs for each article (interaction pair task or IPT). These two tasks are evaluated in terms of the area under curve of the interpolated precision/recall (AUC iP/R) score because the order of identifiers in the output list is important for ease of curation. Results Our INT system developed for the BioCreAtIvE II.5 INT challenge achieved a promising AUC iP/R of 43.5% by using a support vector machine (SVM)-based ranking procedure. Using our new re-ranking algorithm, we have been able to improve system performance (AUC iP/R) by 1.84%. Our experimental results also show that with the re-ranked INT results, our unsupervised IPT system can achieve a competitive AUC iP/R of 23.86%, which outperforms the best BC II.5 INT system by 1.64%. Compared to using only SVM ranked INT results, using re-ranked INT results boosts AUC iP/R by 7.84%. Statistical significance t-test results show that our INT/IPT system with re-ranking outperforms that without re-ranking by a statistically significant difference. Conclusions In this paper, we present a new re-ranking algorithm that considers co-occurrence among identifiers in an article to improve INT and IPT ranking results. Combining the re-ranked INT results with an unsupervised approach to find associations among interactors, the proposed method can boost the IPT performance. We also implement score computation using dynamic programming, which is faster and more efficient than traditional approaches. PMID:21342534

  5. A Novel Approach for Arabic Text Steganography Based on the “BloodGroup” Text Hiding Method

    Directory of Open Access Journals (Sweden)

    S. Malalla,

    2017-04-01

    Full Text Available Steganography is the science of hiding certain messages (data in groups of irrelevant data possibly of other form. The purpose of steganography is covert communication to hide the existence of a message from an intermediary. Text Steganography is the process of embedding secret message (text in another text (cover text so that the existence of secret message cannot be detected by a third party. This paper presents a novel approach for text steganography using the Blood Group (BG method based on the behavior of blood group. Experimentally it is found that the proposed method got good results in capacity, hiding capacity, time complexity, robustness, visibility, and similarity which shows its superiority as compared to most several existing methods.

  6. How Preservice Teachers Make Meaning of Mathematics Methods Texts

    Science.gov (United States)

    Harkness, Shelly Sheats; Brass, Amy

    2017-01-01

    Mathematics methods texts are important resources for supporting preservice teachers' learning. Methods instructors routinely assign readings from texts. Yet, anecdotally and also based on reading compliance literature, many students report that they do not read assigned readings. Within this paper we briefly describe the findings from a survey of…

  7. Getting more out of biomedical documents with GATE's full lifecycle open source text analytics.

    Science.gov (United States)

    Cunningham, Hamish; Tablan, Valentin; Roberts, Angus; Bontcheva, Kalina

    2013-01-01

    This software article describes the GATE family of open source text analysis tools and processes. GATE is one of the most widely used systems of its type with yearly download rates of tens of thousands and many active users in both academic and industrial contexts. In this paper we report three examples of GATE-based systems operating in the life sciences and in medicine. First, in genome-wide association studies which have contributed to discovery of a head and neck cancer mutation association. Second, medical records analysis which has significantly increased the statistical power of treatment/outcome models in the UK's largest psychiatric patient cohort. Third, richer constructs in drug-related searching. We also explore the ways in which the GATE family supports the various stages of the lifecycle present in our examples. We conclude that the deployment of text mining for document abstraction or rich search and navigation is best thought of as a process, and that with the right computational tools and data collection strategies this process can be made defined and repeatable. The GATE research programme is now 20 years old and has grown from its roots as a specialist development tool for text processing to become a rather comprehensive ecosystem, bringing together software developers, language engineers and research staff from diverse fields. GATE now has a strong claim to cover a uniquely wide range of the lifecycle of text analysis systems. It forms a focal point for the integration and reuse of advances that have been made by many people (the majority outside of the authors' own group) who work in text processing for biomedicine and other areas. GATE is available online under GNU open source licences and runs on all major operating systems. Support is available from an active user and developer community and also on a commercial basis.

  8. Researcher’s Perspective of Substitution Method on Text Steganography

    Science.gov (United States)

    Zamir Mansor, Fawwaz; Mustapha, Aida; Azah Samsudin, Noor

    2017-08-01

    The linguistic steganography studies are still in the stage of development and empowerment practices. This paper will present several text steganography on substitution methods based on the researcher’s perspective, all scholar paper will analyse and compared. The objective of this paper is to give basic information in the substitution method of text domain steganography that has been applied by previous researchers. The typical ways of this method also will be identified in this paper to reveal the most effective method in text domain steganography. Finally, the advantage of the characteristic and drawback on these techniques in generally also presented in this paper.

  9. METHOD OF RARE TERM CONTRASTIVE EXTRACTION FROM NATURAL LANGUAGE TEXTS

    Directory of Open Access Journals (Sweden)

    I. A. Bessmertny

    2017-01-01

    Full Text Available The paper considers a problem of automatic domain term extraction from documents corpus by means of a contrast collection. Existing contrastive methods successfully extract often used terms but mishandle rare terms. This could yield poorness of the resulting thesaurus. Assessment of point-wise mutual information is one of the known statistical methods of term extraction and it finds rare terms successfully. Although, it extracts many false terms at that. The proposed approach consists of point-wise mutual information application for rare terms extraction and filtering of candidates by criterion of joint occurrence with the other candidates. We build “documents-by-terms” matrix that is subjected to singular value decomposition to eliminate noise and reveal strong interconnections. Then we pass on to the resulting matrix “terms-by-terms” that reproduces strength of interconnections between words. This approach was approved on a documents collection from “Geology” domain with the use of contrast documents from such topics as “Politics”, “Culture”, “Economics” and “Accidents” on some Internet resources. The experimental results demonstrate operability of this method for rare terms extraction.

  10. Children's Text Messaging: Abbreviations, Input Methods and Links with Literacy

    Science.gov (United States)

    Kemp, N.; Bushnell, C.

    2011-01-01

    This study investigated the effects of mobile phone text-messaging method (predictive and multi-press) and experience (in texters and non-texters) on children's textism use and understanding. It also examined popular claims that the use of text-message abbreviations, or "textese" spelling, is associated with poor literacy skills. A sample of 86…

  11. Selecting and Using Mathematics Methods Texts: Nontrivial Tasks

    Science.gov (United States)

    Harkness, Shelly Sheats; Brass, Amy

    2017-01-01

    Mathematics methods textbooks/texts are important components of many courses for preservice teachers. Researchers should explore how these texts are selected and used. Within this paper we report the findings of a survey administered electronically to 132 members of the Association of Mathematics Teacher Educators (AMTE) in order to answer the…

  12. Energy Consumptions of Text Input Methods on Smartphones

    OpenAIRE

    Obison, Henry; Ajuorah, Chiagozie

    2013-01-01

    Mobile computing devices, in particular smartphones are powered from Lithium-ion batteries, which are limited in capacity. With the increasing popularity of mobile systems, various text input methods have been developed to improve user experience and performance. Briefly, text input method is a user interface that can be used to compose an electronic mail, configure mobile Virtual Private Network, and carryout bank transactions and online purchases. Efficient energy management in these system...

  13. Identifying Scientific Project-generated Data Citation from Full-text Articles: An Investigation of TCGA Data Citation

    Directory of Open Access Journals (Sweden)

    Jiao Li

    2016-06-01

    Full Text Available Purpose: In the open science era, it is typical to share project-generated scientific data by depositing it in an open and accessible database. Moreover, scientific publications are preserved in a digital library archive. It is challenging to identify the data usage that is mentioned in literature and associate it with its source. Here, we investigated the data usage of a government-funded cancer genomics project, The Cancer Genome Atlas (TCGA, via a full-text literature analysis. Design/methodology/approach: We focused on identifying articles using the TCGA dataset and constructing linkages between the articles and the specific TCGA dataset. First, we collected 5,372 TCGA-related articles from PubMed Central (PMC. Second, we constructed a benchmark set with 25 full-text articles that truly used the TCGA data in their studies, and we summarized the key features of the benchmark set. Third, the key features were applied to the remaining PMC full-text articles that were collected from PMC. Findings: The amount of publications that use TCGA data has increased significantly since 2011, although the TCGA project was launched in 2005. Additionally, we found that the critical areas of focus in the studies that use the TCGA data were glioblastoma multiforme, lung cancer, and breast cancer; meanwhile, data from the RNA-sequencing (RNA-seq platform is the most preferable for use. Research limitations: The current workflow to identify articles that truly used TCGA data is labor-intensive. An automatic method is expected to improve the performance. Practical implications: This study will help cancer genomics researchers determine the latest advancements in cancer molecular therapy, and it will promote data sharing and data-intensive scientific discovery. Originality/value: Few studies have been conducted to investigate data usage by government-funded projects/programs since their launch. In this preliminary study, we extracted articles that use TCGA data

  14. Commercial Database Design vs. Library Terminology Comprehension: Why Do Students Print Abstracts Instead of Full-Text Articles?

    Science.gov (United States)

    Imler, Bonnie; Eichelberger, Michelle

    2014-01-01

    When asked to print the full text of an article, many undergraduate college students print the abstract instead of the full text. This study seeks to determine the underlying cause(s) of this confusion. In this quantitative study, participants (n = 40) performed five usability tasks to assess ease of use and usefulness of five commercial library…

  15. download full text

    African Journals Online (AJOL)

    Hence, the main objective of the research was to carry out scientific studies on its ... The animals were sacrificed on day 30 after the NIB scoring and blood sample ... effect on locomotion and rearing activities when compared with the control.

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    African Journals Online (AJOL)

    The overshadowing of education policies in foreign language education at primary .... Cummins states that a threshold level of linguistics competence must be ..... language education planning is designed to accommodate these interests.

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    African Journals Online (AJOL)

    Keywords: Technology, French as a foreign language, Learners, Instruction ... This translates to an increase of 3.7 percent or 1.4 million new mobile subscriptions ... technology (ICT) in foreign language learning and the availability as well as capacities ..... In spite of the many benefits of creating an authentic French learning ...

  18. download full text

    African Journals Online (AJOL)

    Dale E. Zand (1997) argues that People once stood in awe of electricity, until ... in today's information-driven organizations: knowledge, trust, and power. ..... people's culture and resistance to anti-corruption efforts constitute the firmly fixed load.

  19. download full text

    African Journals Online (AJOL)

    Epidemiological study has shown that 2.5 million deaths occurred every year as a result of vaccine-preventable diseases, mainly in Africa and Asia among children less than 5 years old (GIVS, 2005). Immunization is the process of conferring increased resistance to an infectious disease by a means other than experiencing ...

  20. download full text

    African Journals Online (AJOL)

    UNIVERSITY OF BENIN

    By paying strict attention to the manipulation of action and dialogue, the short story ... through the workings of the human mind as he reacts to various predicaments. .... In “A Caring Man,” in A Forest of Flowers, Ken Saro-Wiwa illustrates the theme of .... until his small dirty pillow is thrown out of the window of the moving train.

  1. download full text

    African Journals Online (AJOL)

    ... country and mass migration of the farming communities to IDP camps in major cities ..... "Global Warming Impact: Flood Events, Wet-Dry Conditions and Changing ... Global Environmental Change, Vol. 16, pp. 268-281.Web. Adger, W. N. (1999). "Social Vulnerability to Climate Change and Extremes in Coastal Vietnam.

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    African Journals Online (AJOL)

    Pablo Rubio Gijon

    Hishongwa belongs to a generation of writers who created a new style of expression in .... authority, can turn this authority into something even more autocratic. ... leadership of that (liberation) struggle” (Haarhoff 224), Hishongwa's Marrying ...

  3. download full text

    African Journals Online (AJOL)

    In English, this class includes the particles how, too, so, and as (Ibid). (3) Mary is ...... Doctoral thesis (unpublished), University of Dar es Salaam. Goodness, D. .... manga. fat. corpulent. 36. mbindipindi. green. 37. mwalo. naughty. absurd. 38.

  4. download full text

    African Journals Online (AJOL)

    Adopting a surveillance system for antibacterial use has therefore become a more realistic ..... Financial support was obtained from the African Poverty Related Infection ... classification and Defined Daily Dose system methodology in Canada.

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    African Journals Online (AJOL)

    Oita Etyang

    The concept democracy has been part of man's political life for ages. ... Taking the queue form Bratton and Mattes, we add that prospects of a stable democracy are ..... of the resulting instability that emanate from entrenched ethnic cleavages.

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    African Journals Online (AJOL)

    TAOFEEK YUSUF

    The data used were obtained through questionnaires administered to ... Keywords: academic performance, engineering education, undergraduate students, and .... and commitment to studies irrespective of any form of learning task Yusuf et al.

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    African Journals Online (AJOL)

    Njeri

    He took his children to St Marys, I could not afford to do so. ... place in universities should have been an important learning space for students. ... just us we are fascinated by Manchester football clubs and western movies as well as music.

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    African Journals Online (AJOL)

    Language and Meaning: A Syntactic Study of Wale Okediran's Strange Encounters ... own communication role, making assertions, asking questions, giving orders, ... I will go straight to the police with all the things you stole from the hospital.

  9. Full-text

    African Journals Online (AJOL)

    ADOWIE PERE

    consideration the needs of the current generation without risking ability of future generations to attain their needs. Evaluation of .... If an element or a number such as x and a collection such as A ... defined as definitive and accurate. This also ...

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    African Journals Online (AJOL)

    paula fiona mwikali

    The Portrayal of Masculinity in Dholuo Ohangla Music ... The Luo culture is built on patriarchy and the socialization of the children ..... A leader must be strong because those he/ she leads look up to him/her for direction, assistance and development. ... Being a loyal lieutenant of Orange Democratic Movement, Anyanga ...

  11. Full-text publication of abstract-presented work in physical therapy: do therapists publish what they preach?

    Science.gov (United States)

    Smith, Heather D; Bogenschutz, Elizabeth D; Bayliss, Amy J; Altenburger, Peter A; Warden, Stuart J

    2011-02-01

    Professional meetings, such as the American Physical Therapy Association's (APTA's) Combined Sections Meeting (CSM), provide forums for sharing information relevant to physical therapy. An indicator of whether therapists fully disseminate their work is the number of full-text peer-reviewed publications that result. The purposes of this study were: (1) to determine the full-text publication rate of work presented in abstract form at CSM and (2) to investigate factors influencing this rate. A systematic search was undertaken to locate full-text publications of work presented in abstract form within the Orthopaedic and Sports Physical Therapy sections at CSM between 2000 and 2004. Eligible publications were published within 5 years following abstract presentation. The influences of APTA section, year of abstract presentation, institution of origin, study design, sample size, study significance, reporting of a funding source, and presentation type on full-text publication rate were assessed. Characteristics of full-text publications were explored. Work presented in 1 out of 4 abstracts (25.4%) progressed to full-text publication. Odds of full-text publication increased if the abstract originated from a doctorate-granting or "other" institution, reported findings of an experimental study, reported a statistically significant finding, included a larger sample size, disclosed a funding source, or was presented as a platform presentation. More than one third (37.8%) of full-text publications were published in the Journal of Orthopaedic and Sports Physical Therapy or Physical Therapy, and 4 out of 10 full-text publications (39.2%) contained at least one major change from information presented in abstract form. The full-text publication rate for information presented in abstract form within the Orthopaedic and Sports Physical Therapy sections at CSM is low relative to comparative disciplines. Caution should be exercised when translating information presented at CSM into

  12. Assessing semantic similarity of texts - Methods and algorithms

    Science.gov (United States)

    Rozeva, Anna; Zerkova, Silvia

    2017-12-01

    Assessing the semantic similarity of texts is an important part of different text-related applications like educational systems, information retrieval, text summarization, etc. This task is performed by sophisticated analysis, which implements text-mining techniques. Text mining involves several pre-processing steps, which provide for obtaining structured representative model of the documents in a corpus by means of extracting and selecting the features, characterizing their content. Generally the model is vector-based and enables further analysis with knowledge discovery approaches. Algorithms and measures are used for assessing texts at syntactical and semantic level. An important text-mining method and similarity measure is latent semantic analysis (LSA). It provides for reducing the dimensionality of the document vector space and better capturing the text semantics. The mathematical background of LSA for deriving the meaning of the words in a given text by exploring their co-occurrence is examined. The algorithm for obtaining the vector representation of words and their corresponding latent concepts in a reduced multidimensional space as well as similarity calculation are presented.

  13. Reported estimates of diagnostic accuracy in ophthalmology conference abstracts were not associated with full-text publication.

    Science.gov (United States)

    Korevaar, Daniël A; Cohen, Jérémie F; Spijker, René; Saldanha, Ian J; Dickersin, Kay; Virgili, Gianni; Hooft, Lotty; Bossuyt, Patrick M M

    2016-11-01

    To assess whether conference abstracts that report higher estimates of diagnostic accuracy are more likely to reach full-text publication in a peer-reviewed journal. We identified abstracts describing diagnostic accuracy studies, presented between 2007 and 2010 at the Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting. We extracted reported estimates of sensitivity, specificity, area under the receiver operating characteristic curve (AUC), and diagnostic odds ratio (DOR). Between May and July 2015, we searched MEDLINE and EMBASE to identify corresponding full-text publications; if needed, we contacted abstract authors. Cox regression was performed to estimate associations with full-text publication, where sensitivity, specificity, and AUC were logit transformed, and DOR was log transformed. A full-text publication was found for 226/399 (57%) included abstracts. There was no association between reported estimates of sensitivity and full-text publication (hazard ratio [HR] 1.09 [95% confidence interval {CI} 0.98, 1.22]). The same applied to specificity (HR 1.00 [95% CI 0.88, 1.14]), AUC (HR 0.91 [95% CI 0.75, 1.09]), and DOR (HR 1.01 [95% CI 0.94, 1.09]). Almost half of the ARVO conference abstracts describing diagnostic accuracy studies did not reach full-text publication. Studies in abstracts that mentioned higher accuracy estimates were not more likely to be reported in a full-text publication. Copyright © 2016 Elsevier Inc. All rights reserved.

  14. The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

    Science.gov (United States)

    Kim, Sun; Chatr-aryamontri, Andrew; Chang, Christie S.; Oughtred, Rose; Rust, Jennifer; Wilbur, W. John; Comeau, Donald C.; Dolinski, Kara; Tyers, Mike

    2017-01-01

    A great deal of information on the molecular genetics and biochemistry of model organisms has been reported in the scientific literature. However, this data is typically described in free text form and is not readily amenable to computational analyses. To this end, the BioGRID database systematically curates the biomedical literature for genetic and protein interaction data. This data is provided in a standardized computationally tractable format and includes structured annotation of experimental evidence. BioGRID curation necessarily involves substantial human effort by expert curators who must read each publication to extract the relevant information. Computational text-mining methods offer the potential to augment and accelerate manual curation. To facilitate the development of practical text-mining strategies, a new challenge was organized in BioCreative V for the BioC task, the collaborative Biocurator Assistant Task. This was a non-competitive, cooperative task in which the participants worked together to build BioC-compatible modules into an integrated pipeline to assist BioGRID curators. As an integral part of this task, a test collection of full text articles was developed that contained both biological entity annotations (gene/protein and organism/species) and molecular interaction annotations (protein–protein and genetic interactions (PPIs and GIs)). This collection, which we call the BioC-BioGRID corpus, was annotated by four BioGRID curators over three rounds of annotation and contains 120 full text articles curated in a dataset representing two major model organisms, namely budding yeast and human. The BioC-BioGRID corpus contains annotations for 6409 mentions of genes and their Entrez Gene IDs, 186 mentions of organism names and their NCBI Taxonomy IDs, 1867 mentions of PPIs and 701 annotations of PPI experimental evidence statements, 856 mentions of GIs and 399 annotations of GI evidence statements. The purpose, characteristics and possible future

  15. The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.

    Science.gov (United States)

    Islamaj Dogan, Rezarta; Kim, Sun; Chatr-Aryamontri, Andrew; Chang, Christie S; Oughtred, Rose; Rust, Jennifer; Wilbur, W John; Comeau, Donald C; Dolinski, Kara; Tyers, Mike

    2017-01-01

    A great deal of information on the molecular genetics and biochemistry of model organisms has been reported in the scientific literature. However, this data is typically described in free text form and is not readily amenable to computational analyses. To this end, the BioGRID database systematically curates the biomedical literature for genetic and protein interaction data. This data is provided in a standardized computationally tractable format and includes structured annotation of experimental evidence. BioGRID curation necessarily involves substantial human effort by expert curators who must read each publication to extract the relevant information. Computational text-mining methods offer the potential to augment and accelerate manual curation. To facilitate the development of practical text-mining strategies, a new challenge was organized in BioCreative V for the BioC task, the collaborative Biocurator Assistant Task. This was a non-competitive, cooperative task in which the participants worked together to build BioC-compatible modules into an integrated pipeline to assist BioGRID curators. As an integral part of this task, a test collection of full text articles was developed that contained both biological entity annotations (gene/protein and organism/species) and molecular interaction annotations (protein-protein and genetic interactions (PPIs and GIs)). This collection, which we call the BioC-BioGRID corpus, was annotated by four BioGRID curators over three rounds of annotation and contains 120 full text articles curated in a dataset representing two major model organisms, namely budding yeast and human. The BioC-BioGRID corpus contains annotations for 6409 mentions of genes and their Entrez Gene IDs, 186 mentions of organism names and their NCBI Taxonomy IDs, 1867 mentions of PPIs and 701 annotations of PPI experimental evidence statements, 856 mentions of GIs and 399 annotations of GI evidence statements. The purpose, characteristics and possible future

  16. A full-text english database of testimonies of those exposed to radiation near the Semipalatinsk nuclear test site, Kazakhstan

    OpenAIRE

    Matsuo, Masatsugu; Kawano, Noriyuki; Hirabayashi, Kyoko; Tooka, Yasuyuki; Apsalikov, Kazbek Negamatovich; Hoshi, Masaharu

    2004-01-01

    The present paper is a sequel to the initial report (Kawano et al 2003a) of the project for a full-text Japanese database of the testimonies of those exposed to radiation near the nuclear test site of Semipalatinsk, Kazakhstan. 139 testimonies were gathered in four villages near Semipalatinsk in 2002. We translated them into English from Russian and Kazakh, and created a full-text database by using a Latin script text retrieval program, TERESA. The present paper attempts at essentially the sa...

  17. Impact of Metadata on Full-text Information Retrieval Performance: An Experimental Research on a Small Scale Turkish Corpus

    Directory of Open Access Journals (Sweden)

    Çağdaş Çapkın

    2016-12-01

    Full Text Available Information institutions use text-based information retrieval systems to store, index and retrieve metadata, full-text, or both metadata and full-text (hybrid contents. The aim of this research was to evaluate impact of these contents on information retrieval performance. For this purpose, metadata (MIR, full-text (FIR and hybrid (HIR content information retrieval systems were developed with default Lucene information retrieval model for a small scale Turkish corpus. In order to evaluate performance of this three systems, “precision - recall” and “normalized recall” tests were conducted. Experimental findings showed that there were no significant differences between MIR and FIR in mean average precision (MAP performance. On the other hand, MAP performance of HIR was significantly higher in comparison to MIR and FIR. When information retrieval performance was evaluated as user-centered, the “normalized recall” performances of MIR and HIR were significantly higher than FIR. Additionally, there were no significant differences between the systems in retrieved relevant document means. Processing different types of contents such as metadata and full-text had some advantages and disadvantages for information retrieval systems in terms of term management. The advantages brought together in hybrid content processing (HIR and information retrieval performance improved.

  18. Evaluation of full-scope simulator testing methods

    Energy Technology Data Exchange (ETDEWEB)

    Feher, M P; Moray, N; Senders, J W; Biron, K [Human Factors North Inc., Toronto, ON (Canada)

    1995-03-01

    This report discusses the use of full scope nuclear power plant simulators in licensing examinations for Unit First Operators of CANDU reactors. The existing literature is reviewed, and an annotated bibliography of the more important sources provided. Since existing methods are judged inadequate, conceptual bases for designing a system for licensing are discussed, and a method proposed which would make use of objective scoring methods based on data collection in full-scope simulators. A field trial of such a method is described. The practicality of such a method is critically discussed and possible advantages of subjective methods of evaluation considered. (author). 32 refs., 1 tab., 4 figs.

  19. Evaluation of full-scope simulator testing methods

    International Nuclear Information System (INIS)

    Feher, M.P.; Moray, N.; Senders, J.W.; Biron, K.

    1995-03-01

    This report discusses the use of full scope nuclear power plant simulators in licensing examinations for Unit First Operators of CANDU reactors. The existing literature is reviewed, and an annotated bibliography of the more important sources provided. Since existing methods are judged inadequate, conceptual bases for designing a system for licensing are discussed, and a method proposed which would make use of objective scoring methods based on data collection in full-scope simulators. A field trial of such a method is described. The practicality of such a method is critically discussed and possible advantages of subjective methods of evaluation considered. (author). 32 refs., 1 tab., 4 figs

  20. Empirical investigations into full-text protein interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge.

    Science.gov (United States)

    Lan, Man; Su, Jian

    2010-01-01

    The selection of protein interaction documents is one important application for biology research and has a direct impact on the quality of downstream BioNLP applications, i.e., information extraction and retrieval, summarization, QA, etc. The BioCreative II.5 Challenge Article Categorization task (ACT) involves doing a binary text classification to determine whether a given structured full-text article contains protein interaction information. This may be the first attempt at classification of full-text protein interaction documents in wide community. In this paper, we compare and evaluate the effectiveness of different section types in full-text articles for text classification. Moreover, in practice, the less number of true-positive samples results in unstable performance and unreliable classifier trained on it. Previous research on learning with skewed class distributions has altered the class distribution using oversampling and downsampling. We also investigate the skewed protein interaction classification and analyze the effect of various issues related to the choice of external sources, oversampling training sets, classifiers, etc. We report on the various factors above to show that 1) a full-text biomedical article contains a wealth of scientific information important to users that may not be completely represented by abstracts and/or keywords, which improves the accuracy performance of classification and 2) reinforcing true-positive samples significantly increases the accuracy and stability performance of classification.

  1. On the Creation of Hypertext Links in Full-Text Documents: Measurement of Inter-Linker Consistency.

    Science.gov (United States)

    Ellis, David; And Others

    1994-01-01

    Describes a study in which several different sets of hypertext links are inserted by different people in full-text documents. The degree of similarity between the sets is measured using coefficients and topological indices. As in comparable studies of inter-indexer consistency, the sets of links used by different people showed little similarity.…

  2. Comparing data accuracy between structured abstracts and full-text journal articles: implications in their use for informing clinical decisions.

    Science.gov (United States)

    Fontelo, Paul; Gavino, Alex; Sarmiento, Raymond Francis

    2013-12-01

    The abstract is the most frequently read section of a research article. The use of 'Consensus Abstracts', a clinician-oriented web application formatted for mobile devices to search MEDLINE/PubMed, for informing clinical decisions was proposed recently; however, inaccuracies between abstracts and the full-text article have been shown. Efforts have been made to improve quality. We compared data in 60 recent-structured abstracts and full-text articles from six highly read medical journals. Data inaccuracies were identified and then classified as either clinically significant or not significant. Data inaccuracies were observed in 53.33% of articles ranging from 3.33% to 45% based on the IMRAD format sections. The Results section showed the highest discrepancies (45%) although these were deemed to be mostly not significant clinically except in one. The two most common discrepancies were mismatched numbers or percentages (11.67%) and numerical data or calculations found in structured abstracts but not mentioned in the full text (40%). There was no significant relationship between journals and the presence of discrepancies (Fisher's exact p value =0.3405). Although we found a high percentage of inaccuracy between structured abstracts and full-text articles, these were not significant clinically. The inaccuracies do not seem to affect the conclusion and interpretation overall. Structured abstracts appear to be informative and may be useful to practitioners as a resource for guiding clinical decisions.

  3. Desktop Access to Full-Text NACA and NASA Reports: Systems Developed by NASA Langley Technical Library

    Science.gov (United States)

    Ambur, Manjula Y.; Adams, David L.; Trinidad, P. Paul

    1997-01-01

    NASA Langley Technical Library has been involved in developing systems for full-text information delivery of NACA/NASA technical reports since 1991. This paper will describe the two prototypes it has developed and the present production system configuration. The prototype systems are a NACA CD-ROM of thirty-three classic paper NACA reports and a network-based Full-text Electronic Reports Documents System (FEDS) constructed from both paper and electronic formats of NACA and NASA reports. The production system is the DigiDoc System (DIGItal Documents) presently being developed based on the experiences gained from the two prototypes. DigiDoc configuration integrates the on-line catalog database World Wide Web interface and PDF technology to provide a powerful and flexible search and retrieval system. It describes in detail significant achievements and lessons learned in terms of data conversion, storage technologies, full-text searching and retrieval, and image databases. The conclusions from the experiences of digitization and full- text access and future plans for DigiDoc system implementation are discussed.

  4. SOME ASPECTS OF THE USE OF MATHEMATICAL-STATISTICAL METHODS IN THE ANALYSIS OF SOCIO-HUMANISTIC TEXTS Humanities and social text, mathematics, method, statistics, probability

    Directory of Open Access Journals (Sweden)

    Zaira M Alieva

    2016-01-01

    Full Text Available The article analyzes the application of mathematical and statistical methods in the analysis of socio-humanistic texts. The essence of mathematical and statistical methods, presents examples of their use in the study of Humanities and social phenomena. Considers the key issues faced by the expert in the application of mathematical-statistical methods in socio-humanitarian sphere, including the availability of sustainable contrasting socio-humanitarian Sciences and mathematics; the complexity of the allocation of the object that is the bearer of the problem; having the use of a probabilistic approach. The conclusion according to the results of the study.

  5. A STUDY OF TEXT MINING METHODS, APPLICATIONS,AND TECHNIQUES

    OpenAIRE

    R. Rajamani*1 & S. Saranya2

    2017-01-01

    Data mining is used to extract useful information from the large amount of data. It is used to implement and solve different types of research problems. The research related areas in data mining are text mining, web mining, image mining, sequential pattern mining, spatial mining, medical mining, multimedia mining, structure mining and graph mining. Text mining also referred to text of data mining, it is also called knowledge discovery in text (KDT) or knowledge of intelligent text analysis. T...

  6. [Exploration and construction of the full-text database of acupuncture literature in the Republic of China].

    Science.gov (United States)

    Fei, Lin; Zhao, Jing; Leng, Jiahao; Zhang, Shujian

    2017-10-12

    The ALIPORC full-text database is targeted at a specific full-text database of acupuncture literature in the Republic of China. Starting in 2015, till now, the database has been getting completed, focusing on books relevant with acupuncture, articles and advertising documents, accomplished or published in the Republic of China. The construction of this database aims to achieve the source sharing of acupuncture medical literature in the Republic of China through the retrieval approaches to diversity and accurate content presentation, contributes to the exchange of scholars, reduces the paper damage caused by paging and simplify the retrieval of the rare literature. The writers have made the explanation of the database in light of sources, characteristics and current situation of construction; and have discussed on improving the efficiency and integrity of the database and deepening the development of acupuncture literature in the Republic of China.

  7. Publication trends of shared decision making in 15 high impact medical journals: a full-text review with bibliometric analysis.

    Science.gov (United States)

    Blanc, Xavier; Collet, Tinh-Hai; Auer, Reto; Fischer, Roland; Locatelli, Isabella; Iriarte, Pablo; Krause, Jan; Légaré, France; Cornuz, Jacques

    2014-08-09

    Shared Decision Making (SDM) is increasingly advocated as a model for medical decision making. However, there is still low use of SDM in clinical practice. High impact factor journals might represent an efficient way for its dissemination. We aimed to identify and characterize publication trends of SDM in 15 high impact medical journals. We selected the 15 general and internal medicine journals with the highest impact factor publishing original articles, letters and editorials. We retrieved publications from 1996 to 2011 through the full-text search function on each journal website and abstracted bibliometric data. We included publications of any type containing the phrase "shared decision making" or five other variants in their abstract or full text. These were referred to as SDM publications. A polynomial Poisson regression model with logarithmic link function was used to assess the evolution across the period of the number of SDM publications according to publication characteristics. We identified 1285 SDM publications out of 229,179 publications in 15 journals from 1996 to 2011. The absolute number of SDM publications by journal ranged from 2 to 273 over 16 years. SDM publications increased both in absolute and relative numbers per year, from 46 (0.32% relative to all publications from the 15 journals) in 1996 to 165 (1.17%) in 2011. This growth was exponential (P Full-text search retrieved ten times more SDM publications than a similar PubMed search (1285 vs. 119 respectively). This review in full-text showed that SDM publications increased exponentially in major medical journals from 1996 to 2011. This growth might reflect an increased dissemination of the SDM concept to the medical community.

  8. How accessibility influences citation counts: The case of citations to the full text articles available from ResearchGate

    Directory of Open Access Journals (Sweden)

    Mohammad Sababi

    2017-08-01

    Full Text Available It is generally believed that the number of citations to an article can positively be correlated to its free online availability. In the present study, we investigated the possible impact of academic social networks on the number of citations. We chose the social web service “ResearchGate” as a case. This website acts both as a social network to connect researchers, and at the same time, as an open access repository to publish post-print version of the accepted manuscripts and final versions of open access articles. We collected the data of 1823 articles published by the authors from four different universities. By analyzing these data, we showed that although different levels of full text availability are observed for the four universities, there is always a significant positive correlation between full text availability and the citation count. Moreover, we showed that both post-print version and publisher’s version (i.e., final published version of the archived manuscripts receive more citations than non-OA articles, and the difference in the citation counts of post-print manuscripts and publisher’s version articles is nonsignificant.

  9. Conversion rates of abstracts presented at the Canadian Rheumatology Association Annual Meetings into full-text journal articles.

    Science.gov (United States)

    Yacyshyn, Elaine A; Soong, Laura C

    2017-06-01

    Dissemination of research studies is important for research ideas to be transformed from initial abstracts to full publications. Analyses of the scientific impact and publication record of the Canadian Rheumatology Association (CRA) Annual meeting have not been previously described. This study determines the publication rate of abstracts presented at the CRA Annual Meetings 2005-2013 to full-text journal articles and the factors associated with publication. Program records of previous CRA meetings from 2005 to 2013 were obtained. Abstracts were searched for corresponding full-text publication in Google Scholar and PubMed using a search algorithm. Abstracts and subsequent published articles were evaluated for type of abstract, time to publication, study type, publishing journal, and journal impact factor. A total of 1401 abstracts were included in the study, 567 of which were converted to full publications. The average time to publication was 19.7 months, with 89% of abstracts published within 3 years of being presented. Eighty-three percent of abstracts were clinical in nature, and 58% of published studies were observational in design. Articles were published in a wide range of journals, with the top publisher being the Journal of Rheumatology (31%). Average time to publication was 19.7 months. Eighty-six percent of articles had a Journal Impact Factor > 2. Overall, 40.5% of abstracts presented at the CRA Annual Meetings 2005-2013 were published. Further research is needed to determine barriers and reasons for abstracts not being published as full-text articles.

  10. [Full-text publication of abstracts presented at the 33th Argentinean pediatric meeting and non publication related factors].

    Science.gov (United States)

    Canosa, Daniela; Ferrero, Fernando; Melamud, Ariel; Otero, Paula D; Merech, Raúl S; Ceriani Cernadas, José M

    2011-02-01

    There is no information about non publication of research presented at scientific meetings in Argentina. We analyzed the full-text publication rate of abstracts presented at the 33° Argentinean Pediatric Congress (APC), time to achieve publication, and factors associated with publication or non-publication. Survey-based cross-sectional study, including authors of abstracts presented at the 33° APC. The survey included age, gender, specialty and sub-specialty, professional area and reason of publication or non-publication. We randomly selected 140/894 presented abstracts. Only 16 abstracts (11.4%) were subsequently published in full, requiring 27±15 months. There were no association between full-text publication and author's characteristics. "Oral presentations" were more likely to be subsequently published (p= 0.018). In non published abstracts, 95% were not submitted by the author, more frequently because of "lack of time" (35.9%). Only 11.4% of abstracts were subsequently published in full. Oral presentation was associated with a higher publication rate. Most frequent cause for non-publication was non submission due to lack of time.

  11. FULIR Full-text Institutional Repository of the Ruđer Bošković Institute

    Directory of Open Access Journals (Sweden)

    Macan, B.

    2014-11-01

    Full Text Available Institutional repositories are online platforms for gathering, archiving, dissemination and long-term preservation of an institution’s scientific output. Archiving full-text papers into the institutional and other open access repositories (OAR is one way of achieving open access to scientific informa tion, the so-called “green” OA. In 2006 the idea of implementing an institutional repository at the Ruđer Bošković Institute Library was initiated and one year later, the project had started, parallel with the subproject of digitizing RBI’s documentary materials. 4 Various open source solutions were tested, among which EPrints software was chosen as the most suitable to RBI’s needs. The first documents were archived in March 2011, and on October 18, 2012, the official version of the repository was published under the name Full-text Institutional Repository of the Ruđer Bošković Institute – FULIR. The goal of FULIR is to gather, archive, disseminate and preserve, for the long term, the whole scientific production and documentary materials of the Institute in digital form, as well as provide open access to archived materials where possible. It is possible to archive all kinds of materials in FULIR, such as articles published in journals, conference proceedings, books, book chapters, dissertations, but also various kinds of unpublished materials such as posters and presentations from conferences or lectures, reports, audio and video records and datasets. FULIR is based on the principle that the scientists themselves archive their materials, but in this initial phase, the librarians are also assisting the scientists in archiving new items. The repository allows different access rights to archived materials and a depositor may define to whom (all users/only registered users (RBI staff/only repository administrators, and when (immediately or after a cer tain embargo period full-texts of archived materials will be available. Repository

  12. Large-scale automatic extraction of side effects associated with targeted anticancer drugs from full-text oncological articles.

    Science.gov (United States)

    Xu, Rong; Wang, QuanQiu

    2015-06-01

    Targeted anticancer drugs such as imatinib, trastuzumab and erlotinib dramatically improved treatment outcomes in cancer patients, however, these innovative agents are often associated with unexpected side effects. The pathophysiological mechanisms underlying these side effects are not well understood. The availability of a comprehensive knowledge base of side effects associated with targeted anticancer drugs has the potential to illuminate complex pathways underlying toxicities induced by these innovative drugs. While side effect association knowledge for targeted drugs exists in multiple heterogeneous data sources, published full-text oncological articles represent an important source of pivotal, investigational, and even failed trials in a variety of patient populations. In this study, we present an automatic process to extract targeted anticancer drug-associated side effects (drug-SE pairs) from a large number of high profile full-text oncological articles. We downloaded 13,855 full-text articles from the Journal of Oncology (JCO) published between 1983 and 2013. We developed text classification, relationship extraction, signaling filtering, and signal prioritization algorithms to extract drug-SE pairs from downloaded articles. We extracted a total of 26,264 drug-SE pairs with an average precision of 0.405, a recall of 0.899, and an F1 score of 0.465. We show that side effect knowledge from JCO articles is largely complementary to that from the US Food and Drug Administration (FDA) drug labels. Through integrative correlation analysis, we show that targeted drug-associated side effects positively correlate with their gene targets and disease indications. In conclusion, this unique database that we built from a large number of high-profile oncological articles could facilitate the development of computational models to understand toxic effects associated with targeted anticancer drugs. Copyright © 2015 Elsevier Inc. All rights reserved.

  13. The Effect of Different Modes of English Captioning on EFL learners’ General Listening Comprehension: Full text Vs. Keyword Captions

    Directory of Open Access Journals (Sweden)

    Sorayya Behroozizad

    2015-08-01

    Full Text Available This study investigated the effect of different modes of English captioning on EFL learners’ general listening comprehension. To this end, forty five intermediate-level learners were selected based on their scores on a standardized English proficiency test (PET to carry out the study. Then, the selected participants were randomly assigned into two experimental groups (full-captions and keyword-captions and one control group (no-captions. Research instrumentation included a pre-test and a post-test following an experimental design. Participants took a pre-test and a post-test containing 50 multiple-choice questions (25question for pre-test and 25 question for post-test selected from a standard listening test PET, and also 15 treatment sessions. The findings showed significant differences among full-captions, keyword-captions, and no-captions in terms of their effect on learners’ general listening comprehension. This study provided some pedagogical implications for teaching listening through using different modes of captions. Keywords: Caption, full caption, keyword caption, listening comprehension

  14. Factors Affecting Subsequent Full-text Publication of Papers Presented at the Annual Conference of the Indian Academy of Pediatrics.

    Science.gov (United States)

    Khalil, Sumaira; Mishra, Devendra; Mishra, Ruchi; Gupta, Shalu

    2017-02-15

    To study the factors associated with the subsequent (over next 9 years) full-text publication of papers presented at the 44th National Conference of Indian Academy of Pediatrics (PEDICON), 2007. All papers presented at PEDICON 2007 were searched for subsequent full-text publication over the next 9 years in English-language journals by an internet-based search. The published papers were compared with the conference-abstracts. 74 (16%) of the 450 abstracts presented were subsequently published; 61 (82.4%) in Medline-indexed journals. Majority (50, 67.6%) of the papers was published within the first 36 mo in journals with mean (SD) impact factor of 2.62 (1.63). The factors significantly associated with subsequent publication were papers presented as award papers (Pfull-papers, 55% had a change in title; authors were changed in 65%, and participants' numbers were dissimilar in 8.6%. There is a need to identify the factors responsible for this low rate of subsequent publication, and interventions to improve it both at institutional and researchers' level.

  15. An automated full-symmetry Patterson search method

    International Nuclear Information System (INIS)

    Rius, J.; Miravitlles, C.

    1987-01-01

    A full-symmetry Patterson search method is presented that performs a molecular coarse rotation search in vector space and orientation refinement using the σ function. The oriented molecule is positioned using the fast translation function τ 0 , which is based on the automated interpretation of τ projections using the sum function. This strategy reduces the number of Patterson-function values to be stored in the rotation search, and the use of the τ 0 function minimizes the required time for the development of all probable rotation search solutions. The application of this method to five representative test examples is shown. (orig.)

  16. Full Waveform Inversion Using Oriented Time Migration Method

    KAUST Repository

    Zhang, Zhendong

    2016-04-12

    Full waveform inversion (FWI) for reflection events is limited by its linearized update requirements given by a process equivalent to migration. Unless the background velocity model is reasonably accurate the resulting gradient can have an inaccurate update direction leading the inversion to converge into what we refer to as local minima of the objective function. In this thesis, I first look into the subject of full model wavenumber to analysis the root of local minima and suggest the possible ways to avoid this problem. And then I analysis the possibility of recovering the corresponding wavenumber components through the existing inversion and migration algorithms. Migration can be taken as a generalized inversion method which mainly retrieves the high wavenumber part of the model. Conventional impedance inversion method gives a mapping relationship between the migration image (high wavenumber) and model parameters (full wavenumber) and thus provides a possible cascade inversion strategy to retrieve the full wavenumber components from seismic data. In the proposed approach, consider a mild lateral variation in the model, I find an analytical Frechet derivation corresponding to the new objective function. In the proposed approach, the gradient is given by the oriented time-domain imaging method. This is independent of the background velocity. Specifically, I apply the oriented time-domain imaging (which depends on the reflection slope instead of a background velocity) on the data residual to obtain the geometrical features of the velocity perturbation. Assuming that density is constant, the conventional 1D impedance inversion method is also applicable for 2D or 3D velocity inversion within the process of FWI. This method is not only capable of inverting for velocity, but it is also capable of retrieving anisotropic parameters relying on linearized representations of the reflection response. To eliminate the cross-talk artifacts between different parameters, I

  17. Full surface inspection methods regarding reinforcement corrosion of concrete structures

    International Nuclear Information System (INIS)

    Reichling, K.; Raupach, M.; Broomfield, J.; Gulikers, J.; L'Hostis, Valerie

    2013-01-01

    For reinforced concrete structures a localisation of all significant critical areas can only be done by a full surface inspection. The economic advantages are obvious: uncritical areas have not to be repaired expensively.The first step of the assessment should always be a visual inspection. The range of deterioration causes can be limited and the degree of deterioration may be estimated roughly. The inspection program can be adjusted to the requirements. By means of a full surface potential mapping areas with a high risk for chloride induced reinforcement corrosion can be localised, although no deteriorations are visually detectable at the concrete surface. In combination with concrete cover depth and resistivity measurements areas with corrosion promoting exposure conditions can be localised even if the reinforcement is not yet de-passivated. The following publication gives an overview about the essential full surface investigation methods to localise critical areas regarding corrosion of steel in concrete. The selection of methods is based on the inspection procedure given in reference 2. (authors)

  18. BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.

    Science.gov (United States)

    Peng, Yifan; Arighi, Cecilia; Wu, Cathy H; Vijay-Shanker, K

    2016-01-01

    There has been a large growth in the number of biomedical publications that report experimental results. Many of these results concern detection of protein-protein interactions (PPI). In BioCreative V, we participated in the BioC task and developed a PPI system to detect text passages with PPIs in the full-text articles. By adopting the BioC format, the output of the system can be seamlessly added to the biocuration pipeline with little effort required for the system integration. A distinctive feature of our PPI system is that it utilizes extended dependency graph, an intermediate level of representation that attempts to abstract away syntactic variations in text. As a result, we are able to use only a limited set of rules to extract PPI pairs in the sentences, and additional rules to detect additional passages for PPI pairs. For evaluation, we used the 95 articles that were provided for the BioC annotation task. We retrieved the unique PPIs from the BioGRID database for these articles and show that our system achieves a recall of 83.5%. In order to evaluate the detection of passages with PPIs, we further annotated Abstract and Results sections of 20 documents from the dataset and show that an f-value of 80.5% was obtained. To evaluate the generalizability of the system, we also conducted experiments on AIMed, a well-known PPI corpus. We achieved an f-value of 76.1% for sentence detection and an f-value of 64.7% for unique PPI detection.Database URL: http://proteininformationresource.org/iprolink/corpora. © The Author(s) 2016. Published by Oxford University Press.

  19. Progress in the Full-Text Publication Rate of Orthopaedic and Sport Physical Therapy Abstracts Presented at the American Physical Therapy Association's Combined Sections Meeting.

    Science.gov (United States)

    Warden, Stuart J; Fletcher, Jacquelyn M; Barker, Rick G; Guildenbecher, Elizabeth A; Gorkis, Colleen E; Thompson, William R

    2017-10-07

    Study Design Descriptive study. Background Professional meetings, such as the American Physical Therapy Association's (APTA's) Combined Sections Meeting (CSM), provide forums for sharing information. However, it was reported that only one-quarter of orthopaedic and sports physical therapy abstracts presented at the CSM between 2000 and 2004 went on to full-text publication. This low conversion rate raises a number of concerns regarding the full dissemination of work within the profession. Objectives The purpose of this study was to determine the full-text publication rate of work presented in abstract form at subsequent CSMs and investigate factors influencing the rate. Methods A systematic search was undertaken to locate full-text publications of orthopaedic and sports physical therapy abstracts presented at CSMs between 2005 and 2011. Eligible publications were published within 5 years following abstract presentation. The influences of year of abstract presentation, APTA section, presentation type, institution of origin, study design, and study significance were assessed. Results Over one-third (38.6%) of presented abstracts progressed to full-text publication. Odds of full-text publication increased if the abstract was presented as a platform presentation, originated from a doctorate-granting institution, reported findings of an experimental study, or reported a statistically significant finding. Conclusion The full-text publication rate for orthopaedic and sports physical therapy abstracts presented at recent CSMs has increased by over 50% compared to that reported for the preceding period. The rate is now in the range of that reported in comparable clinical disciplines, demonstrating important progress in the full dissemination of work within the profession. J Orthop Sports Phys Ther, Epub 7 Oct 2017. doi:10.2519/jospt.2018.7581.

  20. The film’s the thing: film translation and its effect on a silent, edited and full text Hamlet The film’s the thing: film translation and its effect on a silent, edited and full text Hamlet

    Directory of Open Access Journals (Sweden)

    Janete R. Costa

    2008-04-01

    Full Text Available Translation is, at its best, a difficult path to tred, especially in a global, multicultural society. A word that defines an object may be in need of careful consideration and modification, not only to convey its individual meaning, but also to place it in the concept or intent when linked with others words forming a thought. The process is particularly complex when pairing a word with an image as is done in film. In the 1960’s, the American television classic, Star Trek, added new words as well as additional meaning to old words in the English lexicon. The definition of these words was clearly given in visual images that can still be recalled today. A typical exchange of dialogue may read: Captain, according to my tricorder, there is no intelligent life on this planet. Beam him up, Scotty. Energise. Translation is, at its best, a difficult path to tred, especially in a global, multicultural society. A word that defines an object may be in need of careful consideration and modification, not only to convey its individual meaning, but also to place it in the concept or intent when linked with others words forming a thought. The process is particularly complex when pairing a word with an image as is done in film. In the 1960’s, the American television classic, Star Trek, added new words as well as additional meaning to old words in the English lexicon. The definition of these words was clearly given in visual images that can still be recalled today. A typical exchange of dialogue may read: Captain, according to my tricorder, there is no intelligent life on this planet. Beam him up, Scotty. Energise.

  1. Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.

    Science.gov (United States)

    Cohen, K Bretonnel; Lanfranchi, Arrick; Choi, Miji Joo-Young; Bada, Michael; Baumgartner, William A; Panteleyeva, Natalya; Verspoor, Karin; Palmer, Martha; Hunter, Lawrence E

    2017-08-17

    Coreference resolution is the task of finding strings in text that have the same referent as other strings. Failures of coreference resolution are a common cause of false negatives in information extraction from the scientific literature. In order to better understand the nature of the phenomenon of coreference in biomedical publications and to increase performance on the task, we annotated the Colorado Richly Annotated Full Text (CRAFT) corpus with coreference relations. The corpus was manually annotated with coreference relations, including identity and appositives for all coreferring base noun phrases. The OntoNotes annotation guidelines, with minor adaptations, were used. Interannotator agreement ranges from 0.480 (entity-based CEAF) to 0.858 (Class-B3), depending on the metric that is used to assess it. The resulting corpus adds nearly 30,000 annotations to the previous release of the CRAFT corpus. Differences from related projects include a much broader definition of markables, connection to extensive annotation of several domain-relevant semantic classes, and connection to complete syntactic annotation. Tool performance was benchmarked on the data. A publicly available out-of-the-box, general-domain coreference resolution system achieved an F-measure of 0.14 (B3), while a simple domain-adapted rule-based system achieved an F-measure of 0.42. An ensemble of the two reached F of 0.46. Following the IDENTITY chains in the data would add 106,263 additional named entities in the full 97-paper corpus, for an increase of 76% percent in the semantic classes of the eight ontologies that have been annotated in earlier versions of the CRAFT corpus. The project produced a large data set for further investigation of coreference and coreference resolution in the scientific literature. The work raised issues in the phenomenon of reference in this domain and genre, and the paper proposes that many mentions that would be considered generic in the general domain are not

  2. Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.

    Science.gov (United States)

    Tudor, Catalina O; Ross, Karen E; Li, Gang; Vijay-Shanker, K; Wu, Cathy H; Arighi, Cecilia N

    2015-01-01

    Protein phosphorylation is a reversible post-translational modification where a protein kinase adds a phosphate group to a protein, potentially regulating its function, localization and/or activity. Phosphorylation can affect protein-protein interactions (PPIs), abolishing interaction with previous binding partners or enabling new interactions. Extracting phosphorylation information coupled with PPI information from the scientific literature will facilitate the creation of phosphorylation interaction networks of kinases, substrates and interacting partners, toward knowledge discovery of functional outcomes of protein phosphorylation. Increasingly, PPI databases are interested in capturing the phosphorylation state of interacting partners. We have previously developed the eFIP (Extracting Functional Impact of Phosphorylation) text mining system, which identifies phosphorylated proteins and phosphorylation-dependent PPIs. In this work, we present several enhancements for the eFIP system: (i) text mining for full-length articles from the PubMed Central open-access collection; (ii) the integration of the RLIMS-P 2.0 system for the extraction of phosphorylation events with kinase, substrate and site information; (iii) the extension of the PPI module with new trigger words/phrases describing interactions and (iv) the addition of the iSimp tool for sentence simplification to aid in the matching of syntactic patterns. We enhance the website functionality to: (i) support searches based on protein roles (kinases, substrates, interacting partners) or using keywords; (ii) link protein entities to their corresponding UniProt identifiers if mapped and (iii) support visual exploration of phosphorylation interaction networks using Cytoscape. The evaluation of eFIP on full-length articles achieved 92.4% precision, 76.5% recall and 83.7% F-measure on 100 article sections. To demonstrate eFIP for knowledge extraction and discovery, we constructed phosphorylation-dependent interaction

  3. An exploratory analysis of PubMed's free full-text limit on citation retrieval for clinical questions.

    Science.gov (United States)

    Krieger, Mary M; Richter, Randy R; Austin, Tricia M

    2008-10-01

    The research sought to determine (1) how use of the PubMed free full-text (FFT) limit affects citation retrieval and (2) how use of the FFT limit impacts the types of articles and levels of evidence retrieved. Four clinical questions based on a research agenda for physical therapy were searched in PubMed both with and without the use of the FFT limit. Retrieved citations were examined for relevancy to each question. Abstracts of relevant citations were reviewed to determine the types of articles and levels of evidence. Descriptive analysis was used to compare the total number of citations, number of relevant citations, types of articles, and levels of evidence both with and without the use of the FFT limit. Across all 4 questions, the FFT limit reduced the number of citations to 11.1% of the total number of citations retrieved without the FFT limit. Additionally, high-quality evidence such as systematic reviews and randomized controlled trials were missed when the FFT limit was used. Health sciences librarians play a key role in educating users about the potential impact the FFT limit has on the number of citations, types of articles, and levels of evidence retrieved.

  4. Publication rates of full-text journal articles converted from abstracts presented during the 22(nd) Turkish National Urology Congress.

    Science.gov (United States)

    Kocaaslan, Ramazan; Kayalı, Yunus; Tok, Adem; Tepeler, Abdulkadir

    2016-03-01

    To analyze the publication rates of full-text journal articles converted from the abstracts presented in the 22(nd) Turkish National Urology Congress in 2012. A total of 576 abstracts accepted for presentation at the 22(nd) Turkish National Urology Association Meeting were identified from the published abstract book. The abstracts were categorized into subsections such as endourology and pediatric urology. The subsequent publication rate for the studies was evaluated by scanning PubMed Medline. Abstracts published before the proceedings were excluded from the study. The abstracts were categorized as being presented orally (n=155), by poster (n=421), or by video (n=78). Of the 28 (18.3%) of 155 oral and 34 (8.15%) of 421 poster presentations, were subsequently published in several journals until March 2015. The publication rates of the abstracts based on urology subsections were as follows: neurology (25%), andrology (18.6%), endourology (17.2%), urolithiasis (15.3%), general urology (12.5%), infectious diseases (7.14%), pediatric urology (6.25%), uro-gynecology (6.06%), reconstructive urology (5.8%), and urooncology (3.8%). The average time to publication was 11.77 (0-33) months. This is the first study assessing the publication rates of abstracts presented at a Turkish National Urology Congress. It reveals that more qualified randomized studies need to be done to improve the rate of publication.

  5. Extended discrete-ordinate method considering full polarization state

    International Nuclear Information System (INIS)

    Box, Michael A.; Qin Yi

    2006-01-01

    This paper presents an extension to the standard discrete-ordinate method (DOM) to consider generalized sources including: beam sources which can be placed at any (vertical) position and illuminate in any direction, thermal emission from the atmosphere and angularly distributed sources which illuminate from a surface as continuous functions of zenith and azimuth angles. As special cases, the thermal emission from the surface and deep space can be implemented as angularly distributed sources. Analytical-particular solutions for all source types are derived using the infinite medium Green's function. Radiation field zenith angle interpolation using source function integration is developed for all source types. The development considers the full state of polarization, including the sources (as applicable) and the (BRDF) surface, but the development can be reduced easily to scalar problems and is ready to be implemented in a single set of code for both scalar and vector radiative transfer computation

  6. Extended discrete-ordinate method considering full polarization state

    Energy Technology Data Exchange (ETDEWEB)

    Box, Michael A. [School of Physics, University of New South Wales (Australia)]. E-mail: m.box@unsw.edu.au; Qin Yi [School of Physics, University of New South Wales (Australia)]. E-mail: yi.qin@csiro.au

    2006-01-15

    This paper presents an extension to the standard discrete-ordinate method (DOM) to consider generalized sources including: beam sources which can be placed at any (vertical) position and illuminate in any direction, thermal emission from the atmosphere and angularly distributed sources which illuminate from a surface as continuous functions of zenith and azimuth angles. As special cases, the thermal emission from the surface and deep space can be implemented as angularly distributed sources. Analytical-particular solutions for all source types are derived using the infinite medium Green's function. Radiation field zenith angle interpolation using source function integration is developed for all source types. The development considers the full state of polarization, including the sources (as applicable) and the (BRDF) surface, but the development can be reduced easily to scalar problems and is ready to be implemented in a single set of code for both scalar and vector radiative transfer computation.

  7. Validation study of core analysis methods for full MOX BWR

    International Nuclear Information System (INIS)

    2013-01-01

    JNES has been developing a technical database used in reviewing validation of core analysis methods of LWRs in the coming occasions: (1) confirming the core safety parameters of the initial core (one-third MOX core) through a full MOX core in Oma Nuclear Power Plant, which is under the construction, (2) licensing high-burnup MOX cores in the future and (3) reviewing topical reports on core analysis codes for safety design and evaluation. Based on the technical database, JNES will issue a guide of reviewing the core analysis methods used for safety design and evaluation of LWRs. The database will be also used for validation and improving of core analysis codes developed by JNES. JNES has progressed with the projects: (1) improving a Doppler reactivity analysis model in a Monte Carlo calculation code MVP, (2) sensitivity study of nuclear cross section date on reactivity calculation of experimental cores composed of UO 2 and MOX fuel rods, (3) analysis of isotopic composition data for UO 2 and MOX fuels and (4) the guide of reviewing the core analysis codes and others. (author)

  8. Validation study of core analysis methods for full MOX BWR

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2013-08-15

    JNES has been developing a technical database used in reviewing validation of core analysis methods of LWRs in the coming occasions: (1) confirming the core safety parameters of the initial core (one-third MOX core) through a full MOX core in Oma Nuclear Power Plant, which is under the construction, (2) licensing high-burnup MOX cores in the future and (3) reviewing topical reports on core analysis codes for safety design and evaluation. Based on the technical database, JNES will issue a guide of reviewing the core analysis methods used for safety design and evaluation of LWRs. The database will be also used for validation and improving of core analysis codes developed by JNES. JNES has progressed with the projects: (1) improving a Doppler reactivity analysis model in a Monte Carlo calculation code MVP, (2) sensitivity study of nuclear cross section date on reactivity calculation of experimental cores composed of UO{sub 2} and MOX fuel rods, (3) analysis of isotopic composition data for UO{sub 2} and MOX fuels and (4) the guide of reviewing the core analysis codes and others. (author)

  9. Combining automatic table classification and relationship extraction in extracting anticancer drug-side effect pairs from full-text articles.

    Science.gov (United States)

    Xu, Rong; Wang, QuanQiu

    2015-02-01

    Anticancer drug-associated side effect knowledge often exists in multiple heterogeneous and complementary data sources. A comprehensive anticancer drug-side effect (drug-SE) relationship knowledge base is important for computation-based drug target discovery, drug toxicity predication and drug repositioning. In this study, we present a two-step approach by combining table classification and relationship extraction to extract drug-SE pairs from a large number of high-profile oncological full-text articles. The data consists of 31,255 tables downloaded from the Journal of Oncology (JCO). We first trained a statistical classifier to classify tables into SE-related and -unrelated categories. We then extracted drug-SE pairs from SE-related tables. We compared drug side effect knowledge extracted from JCO tables to that derived from FDA drug labels. Finally, we systematically analyzed relationships between anti-cancer drug-associated side effects and drug-associated gene targets, metabolism genes, and disease indications. The statistical table classifier is effective in classifying tables into SE-related and -unrelated (precision: 0.711; recall: 0.941; F1: 0.810). We extracted a total of 26,918 drug-SE pairs from SE-related tables with a precision of 0.605, a recall of 0.460, and a F1 of 0.520. Drug-SE pairs extracted from JCO tables is largely complementary to those derived from FDA drug labels; as many as 84.7% of the pairs extracted from JCO tables have not been included a side effect database constructed from FDA drug labels. Side effects associated with anticancer drugs positively correlate with drug target genes, drug metabolism genes, and disease indications. Copyright © 2014 Elsevier Inc. All rights reserved.

  10. Comparison of Document Index Graph Using TextRank and HITS Weighting Method in Automatic Text Summarization

    Science.gov (United States)

    Hadyan, Fadhlil; Shaufiah; Arif Bijaksana, Moch.

    2017-01-01

    Automatic summarization is a system that can help someone to take the core information of a long text instantly. The system can help by summarizing text automatically. there’s Already many summarization systems that have been developed at this time but there are still many problems in those system. In this final task proposed summarization method using document index graph. This method utilizes the PageRank and HITS formula used to assess the web page, adapted to make an assessment of words in the sentences in a text document. The expected outcome of this final task is a system that can do summarization of a single document, by utilizing document index graph with TextRank and HITS to improve the quality of the summary results automatically.

  11. Saddle Slow Manifolds and Canard Orbits in [Formula: see text] and Application to the Full Hodgkin-Huxley Model.

    Science.gov (United States)

    Hasan, Cris R; Krauskopf, Bernd; Osinga, Hinke M

    2018-04-19

    Many physiological phenomena have the property that some variables evolve much faster than others. For example, neuron models typically involve observable differences in time scales. The Hodgkin-Huxley model is well known for explaining the ionic mechanism that generates the action potential in the squid giant axon. Rubin and Wechselberger (Biol. Cybern. 97:5-32, 2007) nondimensionalized this model and obtained a singularly perturbed system with two fast, two slow variables, and an explicit time-scale ratio ε. The dynamics of this system are complex and feature periodic orbits with a series of action potentials separated by small-amplitude oscillations (SAOs); also referred to as mixed-mode oscillations (MMOs). The slow dynamics of this system are organized by two-dimensional locally invariant manifolds called slow manifolds which can be either attracting or of saddle type.In this paper, we introduce a general approach for computing two-dimensional saddle slow manifolds and their stable and unstable fast manifolds. We also develop a technique for detecting and continuing associated canard orbits, which arise from the interaction between attracting and saddle slow manifolds, and provide a mechanism for the organization of SAOs in [Formula: see text]. We first test our approach with an extended four-dimensional normal form of a folded node. Our results demonstrate that our computations give reliable approximations of slow manifolds and canard orbits of this model. Our computational approach is then utilized to investigate the role of saddle slow manifolds and associated canard orbits of the full Hodgkin-Huxley model in organizing MMOs and determining the firing rates of action potentials. For ε sufficiently large, canard orbits are arranged in pairs of twin canard orbits with the same number of SAOs. We illustrate how twin canard orbits partition the attracting slow manifold into a number of ribbons that play the role of sectors of rotations. The upshot is that we

  12. A full digital approach to the TDCR method

    International Nuclear Information System (INIS)

    Mini, Giuliano; Pepe, Francesco; Tintori, Carlo; Capogni, Marco

    2014-01-01

    Current state of the art solutions based on the Triple to Double Coincidence Ratio method are generally large size, heavy-weight and not transportable systems. This is due, on one side, to large detectors and scintillation chambers and, on the other, to bulky analog electronics for data acquisition. CAEN developed a new, full digital approach to TDCR technique based on a portable, stand-alone, high-speed multichannel digitizer, on-board Digital Pulse Processing and dedicated DAQ software that emulates the well-known MAC3 analog board. - Highlights: • CAEN Desktop Digitizers used to emulate the MAC3 analog board in TDCR acquisition. • Spectroscopic application of the CAEN digitizers to the TDCR for charge spectra. • Development of two different softwares by CAEN and ENEA-INMRI for TDCR analysis. • Single electron peak obtained by CAEN digitizer and ENEA-INMRI portable TDCR. • Measurements of 90 Sr/ 90 Y by the new TDCR device equipped with CAEN digitizers

  13. Learning How to Write an Academic Text: The Effect of Instructional Method and Reflection on Text Quality

    Science.gov (United States)

    van der Loo, Janneke; Krahmer, Emiel; van Amelsvoort, Marije

    2016-01-01

    In this paper we present preliminary results on a study on the effect of instructional method (observational learning and learning by doing) and reflection (yes or no) on academic text quality and self-efficacy beliefs. 56 undergraduate students were assigned to either an observational learning or learning-by-doing condition, with or without…

  14. Unsupervised text mining methods for literature analysis: a case study for Thomas Pynchon's V.

    Directory of Open Access Journals (Sweden)

    Christos Iraklis Tsatsoulis

    2013-08-01

    Full Text Available We investigate the use of unsupervised text mining methods for the analysis of prose literature works, using Thomas Pynchon's novel 'V'. as a case study. Our results suggest that such methods may be employed to reveal meaningful information regarding the novel’s structure. We report results using a wide variety of clustering algorithms, several distinct distance functions, and different visualization techniques. The application of a simple topic model is also demonstrated. We discuss the meaningfulness of our results along with the limitations of our approach, and we suggest some possible paths for further study.

  15. Estimation of Cross-Lingual News Similarities Using Text-Mining Methods

    Directory of Open Access Journals (Sweden)

    Zhouhao Wang

    2018-01-01

    Full Text Available In this research, two estimation algorithms for extracting cross-lingual news pairs based on machine learning from financial news articles have been proposed. Every second, innumerable text data, including all kinds news, reports, messages, reviews, comments, and tweets are generated on the Internet, and these are written not only in English but also in other languages such as Chinese, Japanese, French, etc. By taking advantage of multi-lingual text resources provided by Thomson Reuters News, we developed two estimation algorithms for extracting cross-lingual news pairs from multilingual text resources. In our first method, we propose a novel structure that uses the word information and the machine learning method effectively in this task. Simultaneously, we developed a bidirectional Long Short-Term Memory (LSTM based method to calculate cross-lingual semantic text similarity for long text and short text, respectively. Thus, when an important news article is published, users can read similar news articles that are written in their native language using our method.

  16. Open-Source Tools for Enhancing Full-Text Searching of OPACs: Use of Koha, Greenstone and Fedora

    Science.gov (United States)

    Anuradha, K. T.; Sivakaminathan, R.; Kumar, P. Arun

    2011-01-01

    Purpose: There are many library automation packages available as open-source software, comprising two modules: staff-client module and online public access catalogue (OPAC). Although the OPAC of these library automation packages provides advanced features of searching and retrieval of bibliographic records, none of them facilitate full-text…

  17. Stego Keys Performance on Feature Based Coding Method in Text Domain

    Directory of Open Access Journals (Sweden)

    Din Roshidi

    2017-01-01

    Full Text Available A main critical factor on embedding process in any text steganography method is a key used known as stego key. This factor will be influenced the success of the embedding process of text steganography method to hide a message from third party or any adversary. One of the important aspects on embedding process in text steganography method is the fitness performance of the stego key. Three parameters of the fitness performance of the stego key have been identified such as capacity ratio, embedded fitness ratio and saving space ratio. It is because a better as capacity ratio, embedded fitness ratio and saving space ratio offers of any stego key; a more message can be hidden. Therefore, main objective of this paper is to analyze three features coding based namely CALP, VERT and QUAD of stego keys in text steganography on their capacity ratio, embedded fitness ratio and saving space ratio. It is found that CALP method give a good effort performance compared to VERT and QUAD methods.

  18. Full Waveform Inversion Using Oriented Time Migration Method

    KAUST Repository

    Zhang, Zhendong

    2016-01-01

    Full waveform inversion (FWI) for reflection events is limited by its linearized update requirements given by a process equivalent to migration. Unless the background velocity model is reasonably accurate the resulting gradient can have

  19. Discrepancies between Abstracts Presented at International Association for Dental Research Annual Sessions from 2004 to 2005 and Full-Text Publication.

    Science.gov (United States)

    Prasad, Soni; Lee, Damian J; Yuan, Judy Chia-Chun; Barao, Valentim A R; Shyamsunder, Nodesh; Sukotjo, Cortino

    2012-01-01

    Purpose. The purpose of this study was to evaluate the discrepancies between abstracts presented at the IADR meeting (2004-2005) and their full-text publication. Material and Methods. Abstracts from the Prosthodontic Section of IADR meeting were obtained. The following information was collected: abstract title, number of authors, study design, statistical analysis, outcome, and funding source. PubMed was used to identify the full-text publication of the abstracts. The discrepancies between the abstract and the full-text publication were examined, categorized as major and minor discrepancies, and quantified. The data were collected and analyzed using descriptive analysis. Frequency and percentage of major and minor discrepancies were calculated. Results. A total of 109 (95.6%) articles showed changes from their abstracts. Seventy-four (65.0%) and 105 (92.0%) publications had at least one major and one minor discrepancies, respectively. Minor discrepancies were more prevalent (92.0%) than major discrepancies (65.0%). The most common minor discrepancy was observed in the title (80.7%), and most common major discrepancies were seen in results (48.2%). Conclusion. Minor discrepancies were more prevalent than major discrepancies. The data presented in this study may be useful to establish a more comprehensive structured abstract requirement for future meetings.

  20. The full size validation of remanent life assessment methods

    International Nuclear Information System (INIS)

    Hepworth, J.K.; Williams, J.A.

    1988-03-01

    A range of possible life assessment techniques for the remanent life appraisal of creeping structures is available in the published literature. However, due to the safety implications, the true conservatism of such methods cannot be assessed on operating plant. Consequently, the CEGB set up a four vessel programme in the Pressure Vessel Test Facility at the Marchwood Engineering Laboratories of the CEGB to underwrite and quantify the accuracy of these methods. The application of two non-destructive methods, namely strain monitoring and hardness measurement, to the data generated during about 12,000 hours of testing is examined. The current state of development of these methods is reviewed. Finally, the future CEGB programme relating to these vessels is discussed. (author)

  1. CLOPW; a mixed basis set full potential electronic structure method

    NARCIS (Netherlands)

    Bekker, H.G.; Bekker, Hermie Gerhard

    1997-01-01

    This thesis is about the development of the full potental CLOPW package for electronic structure calculations. Chapter 1 provides the necessary background in the theory of solid state physics. It gives a short overview of the effective one particle model as commonly used in solid state physics. It

  2. Acoustic measurements of a full-scale rotor with four tip shapes. Volume 1: Text, appendices A and B

    Science.gov (United States)

    Mosher, M.

    1984-01-01

    A full-scale helicopter with four different blade-tip geometries was tested in the 40- by 80-foot wind tunnel at Ames Research Center. Performance, loads, and noise were measured. The four tip shapes tested were rectangular, tapered, swept, and swept-tapered. Noise measurements from that test are presented in the form of tables and plots. The noise data include measurements of the sound pressure level in dB, dBA, and tone-corrected PNdB, for all of the conditions tested. Detailed measurements, 1/3-octave spectra and time-histories for some selected data are included as well as plots of dBA as function of test condition. Some performance measurements are given to aid interpretation of the noise data.

  3. An unsupervised text mining method for relation extraction from biomedical literature.

    Directory of Open Access Journals (Sweden)

    Changqin Quan

    Full Text Available The wealth of interaction information provided in biomedical articles motivated the implementation of text mining approaches to automatically extract biomedical relations. This paper presents an unsupervised method based on pattern clustering and sentence parsing to deal with biomedical relation extraction. Pattern clustering algorithm is based on Polynomial Kernel method, which identifies interaction words from unlabeled data; these interaction words are then used in relation extraction between entity pairs. Dependency parsing and phrase structure parsing are combined for relation extraction. Based on the semi-supervised KNN algorithm, we extend the proposed unsupervised approach to a semi-supervised approach by combining pattern clustering, dependency parsing and phrase structure parsing rules. We evaluated the approaches on two different tasks: (1 Protein-protein interactions extraction, and (2 Gene-suicide association extraction. The evaluation of task (1 on the benchmark dataset (AImed corpus showed that our proposed unsupervised approach outperformed three supervised methods. The three supervised methods are rule based, SVM based, and Kernel based separately. The proposed semi-supervised approach is superior to the existing semi-supervised methods. The evaluation on gene-suicide association extraction on a smaller dataset from Genetic Association Database and a larger dataset from publicly available PubMed showed that the proposed unsupervised and semi-supervised methods achieved much higher F-scores than co-occurrence based method.

  4. The Dayton Agenda: Full Text

    Science.gov (United States)

    Journal of Research on Christian Education, 2009

    2009-01-01

    In November 1997, 140 researchers, administrators, and others interested in the support of nonpublic schools gathered at the University of Dayton to develop a research agenda for American private education. What developed over the several hours of intense sessions was an agenda that has given direction to researchers well into the 21st century.…

  5. New method of steganalysis for text data obtained by synonym run-length encoding

    Directory of Open Access Journals (Sweden)

    Ivan V. Nechta

    2018-05-01

    Full Text Available In this article, we present a new stegoanalysis method for detecting a text obtained by the synonym Run-Length Encoding. The analyzed RLE-method allows us to keep some statistical properties of the text after a secret message embedding. In particular, the probabilities distribution of the bits in the extracted message and the probabilities distribution of using text synonyms keep unchanged, that ensures a high secrecy degree of the considered embedding method. In this paper we show that the embedded message changes the probabilities distribution of bit-series lengths in the extracted message, and this fact is used for our stegoanalysis. It was shown that the embedded message breaks the statistical structure of the container, and this fact is used for the stegoanalysis. The constructed stegotest compares the probability distribution of runs (with length no more than 5 bits in the message extracted from the container with reference distributions corresponding to an empty and embedded containers.  Reference distributions were obtained by analysing of 1000 natural-text containers taken from the Gutenberg Project library. In this paper we consider two approaches for obtaining reference distributions. The first approach deals with analyzing the statistic of the message extracted from the container in the usual way (using the Tyrannosaurus Lex program. The second approach involves an additional decoding of the message in accordance with the analyzed run-length encoding algorithm. Experimental results allow us to assert that the first approach is more effective. The Kullback-Leibler measure is used as a divergence measure of two probability distributions. It was shown that the proposed method makes it possible to detect presence of the secret message in the container with a number of synonyms equal to 500, while false negative error is 1.5% and false positive error is 1.3%. In comparison with the known analogs, the proposed method demonstrates higher

  6. NetiNeti: discovery of scientific names from text using machine learning methods

    Directory of Open Access Journals (Sweden)

    Akella Lakshmi

    2012-08-01

    Full Text Available Abstract Background A scientific name for an organism can be associated with almost all biological data. Name identification is an important step in many text mining tasks aiming to extract useful information from biological, biomedical and biodiversity text sources. A scientific name acts as an important metadata element to link biological information. Results We present NetiNeti (Name Extraction from Textual Information-Name Extraction for Taxonomic Indexing, a machine learning based approach for recognition of scientific names including the discovery of new species names from text that will also handle misspellings, OCR errors and other variations in names. The system generates candidate names using rules for scientific names and applies probabilistic machine learning methods to classify names based on structural features of candidate names and features derived from their contexts. NetiNeti can also disambiguate scientific names from other names using the contextual information. We evaluated NetiNeti on legacy biodiversity texts and biomedical literature (MEDLINE. NetiNeti performs better (precision = 98.9% and recall = 70.5% compared to a popular dictionary based approach (precision = 97.5% and recall = 54.3% on a 600-page biodiversity book that was manually marked by an annotator. On a small set of PubMed Central’s full text articles annotated with scientific names, the precision and recall values are 98.5% and 96.2% respectively. NetiNeti found more than 190,000 unique binomial and trinomial names in more than 1,880,000 PubMed records when used on the full MEDLINE database. NetiNeti also successfully identifies almost all of the new species names mentioned within web pages. Conclusions We present NetiNeti, a machine learning based approach for identification and discovery of scientific names. The system implementing the approach can be accessed at http://namefinding.ubio.org.

  7. Analysis of full-text publication and publishing predictors of abstracts presented at an Italian public health meeting (2005-2007).

    Science.gov (United States)

    Castaldi, S; Giacometti, M; Toigo, W; Bert, F; Siliquini, R

    2015-09-29

    In Public Health, a thorough review of abstract quality evaluations and the publication history of studies presented at scientific meetings has never been conducted. To analyse the long-term outcome of quality abstracts submitted to conferences of Italian Society of Hygiene and Public Health (SItI) from 2005 to 2007, we conducted a second analysis of previously published material aiming to estimate full-text publication rate of high quality abstract presented at Italian public health meetings, and to identify predictors of full-text publication. The search was undertaken through scientific databases and search engines and through the web sites of the major Italian journals of Public Health. For each publication confirmed as a full text paper, the journal name, impact factor, year of publication, gender of the first author, type of study design, characteristics of the results and sample size were collected. The overall publication rate of the abstracts presented is 23.5%; most of the papers were published in Public Health journals (average impact factor: 3.007). Non universitary affiliation had resulted in a lower probability of publication, while some of the Conference topics had predisposed the studies to an increased likelihood of publication as well as poster form presentation. The method presented in this study provides a good framework for the evaluation of the scientific evidence. The findings achieved should be taken into consideration by the Scientific Societies during the contributions selection phase, with the aim of achieving a continuous improvement of work quality. In the future, it would be interesting to survey the abstract authors to identify reasons for unpublished data.

  8. TextTB: A Mixed Method Pilot Study Evaluating Acceptance, Feasibility, and Exploring Initial Efficacy of a Text Messaging Intervention to Support TB Treatment Adherence

    Directory of Open Access Journals (Sweden)

    Sarah Iribarren

    2013-01-01

    Full Text Available Objective. To assess a text messaging intervention to promote tuberculosis (TB treatment adherence. Methods. A mixed-methods pilot study was conducted within a public pulmonary-specialized hospital in Argentina. Patients newly diagnosed with TB who were 18 or older, and had mobile phone access were recruited and randomized to usual care plus either medication calendar (n=19 or text messaging intervention (n=18 for the first two months of treatment. Primary outcomes were feasibility and acceptability; secondary outcomes explored initial efficacy. Results. Feasibility was evidenced by high access to mobile phones, familiarity with texting, most phones limited to basic features, a low rate of participant refusal, and many describing suboptimal TB understanding. Acceptability was evidenced by participants indicating feeling cared for, supported, responsible for their treatment, and many self-reporting adherence without a reminder. Participants in the texting group self-reported adherence on average 77% of the days whereas only 53% in calendar group returned diaries. Exploring initial efficacy, microscopy testing was low and treatment outcomes were similar in both groups. Conclusion. The texting intervention was well accepted and feasible with greater reporting of adherence using text messaging than the diary. Further evaluation of the texting intervention is warranted.

  9. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

    Science.gov (United States)

    Krallinger, Martin; Vazquez, Miguel; Leitner, Florian; Salgado, David; Chatr-Aryamontri, Andrew; Winter, Andrew; Perfetto, Livia; Briganti, Leonardo; Licata, Luana; Iannuccelli, Marta; Castagnoli, Luisa; Cesareni, Gianni; Tyers, Mike; Schneider, Gerold; Rinaldi, Fabio; Leaman, Robert; Gonzalez, Graciela; Matos, Sergio; Kim, Sun; Wilbur, W John; Rocha, Luis; Shatkay, Hagit; Tendulkar, Ashish V; Agarwal, Shashank; Liu, Feifan; Wang, Xinglong; Rak, Rafal; Noto, Keith; Elkan, Charles; Lu, Zhiyong; Dogan, Rezarta Islamaj; Fontaine, Jean-Fred; Andrade-Navarro, Miguel A; Valencia, Alfonso

    2011-10-03

    Determining usefulness of biomedical text mining systems requires realistic task definition and data selection criteria without artificial constraints, measuring performance aspects that go beyond traditional metrics. The BioCreative III Protein-Protein Interaction (PPI) tasks were motivated by such considerations, trying to address aspects including how the end user would oversee the generated output, for instance by providing ranked results, textual evidence for human interpretation or measuring time savings by using automated systems. Detecting articles describing complex biological events like PPIs was addressed in the Article Classification Task (ACT), where participants were asked to implement tools for detecting PPI-describing abstracts. Therefore the BCIII-ACT corpus was provided, which includes a training, development and test set of over 12,000 PPI relevant and non-relevant PubMed abstracts labeled manually by domain experts and recording also the human classification times. The Interaction Method Task (IMT) went beyond abstracts and required mining for associations between more than 3,500 full text articles and interaction detection method ontology concepts that had been applied to detect the PPIs reported in them. A total of 11 teams participated in at least one of the two PPI tasks (10 in ACT and 8 in the IMT) and a total of 62 persons were involved either as participants or in preparing data sets/evaluating these tasks. Per task, each team was allowed to submit five runs offline and another five online via the BioCreative Meta-Server. From the 52 runs submitted for the ACT, the highest Matthew's Correlation Coefficient (MCC) score measured was 0.55 at an accuracy of 89% and the best AUC iP/R was 68%. Most ACT teams explored machine learning methods, some of them also used lexical resources like MeSH terms, PSI-MI concepts or particular lists of verbs and nouns, some integrated NER approaches. For the IMT, a total of 42 runs were evaluated by comparing

  10. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

    Science.gov (United States)

    2011-01-01

    Background Determining usefulness of biomedical text mining systems requires realistic task definition and data selection criteria without artificial constraints, measuring performance aspects that go beyond traditional metrics. The BioCreative III Protein-Protein Interaction (PPI) tasks were motivated by such considerations, trying to address aspects including how the end user would oversee the generated output, for instance by providing ranked results, textual evidence for human interpretation or measuring time savings by using automated systems. Detecting articles describing complex biological events like PPIs was addressed in the Article Classification Task (ACT), where participants were asked to implement tools for detecting PPI-describing abstracts. Therefore the BCIII-ACT corpus was provided, which includes a training, development and test set of over 12,000 PPI relevant and non-relevant PubMed abstracts labeled manually by domain experts and recording also the human classification times. The Interaction Method Task (IMT) went beyond abstracts and required mining for associations between more than 3,500 full text articles and interaction detection method ontology concepts that had been applied to detect the PPIs reported in them. Results A total of 11 teams participated in at least one of the two PPI tasks (10 in ACT and 8 in the IMT) and a total of 62 persons were involved either as participants or in preparing data sets/evaluating these tasks. Per task, each team was allowed to submit five runs offline and another five online via the BioCreative Meta-Server. From the 52 runs submitted for the ACT, the highest Matthew's Correlation Coefficient (MCC) score measured was 0.55 at an accuracy of 89% and the best AUC iP/R was 68%. Most ACT teams explored machine learning methods, some of them also used lexical resources like MeSH terms, PSI-MI concepts or particular lists of verbs and nouns, some integrated NER approaches. For the IMT, a total of 42 runs were

  11. A comparison of the accuracy of clinical decisions based on full-text articles and on journal abstracts alone: a study among residents in a tertiary care hospital.

    Science.gov (United States)

    Marcelo, Alvin; Gavino, Alex; Isip-Tan, Iris Thiele; Apostol-Nicodemus, Leilanie; Mesa-Gaerlan, Faith Joan; Firaza, Paul Nimrod; Faustorilla, John Francis; Callaghan, Fiona M; Fontelo, Paul

    2013-04-01

    Many clinicians depend solely on journal abstracts to guide clinical decisions. This study aims to determine if there are differences in the accuracy of responses to simulated cases between resident physicians provided with an abstract only and those with full-text articles. It also attempts to describe their information-seeking behaviour. Seventy-seven resident physicians from four specialty departments of a tertiary care hospital completed a paper-based questionnaire with clinical simulation cases, then randomly assigned to two intervention groups-access to abstracts-only and access to both abstracts and full-text. While having access to medical literature, they completed an online version of the same questionnaire. The average improvement across departments was not significantly different between the abstracts-only group and the full-text group (p=0.44), but when accounting for an interaction between intervention and department, the effect was significant (p=0.049) with improvement greater with full-text in the surgery department. Overall, the accuracy of responses was greater after the provision of either abstracts-only or full-text (pfull-text articles were more accurate than those guided by abstracts alone, but the results seem to be driven by a significant difference in one department.

  12. [Text mining, a method for computer-assisted analysis of scientific texts, demonstrated by an analysis of author networks].

    Science.gov (United States)

    Hahn, P; Dullweber, F; Unglaub, F; Spies, C K

    2014-06-01

    Searching for relevant publications is becoming more difficult with the increasing number of scientific articles. Text mining as a specific form of computer-based data analysis may be helpful in this context. Highlighting relations between authors and finding relevant publications concerning a specific subject using text analysis programs are illustrated graphically by 2 performed examples. © Georg Thieme Verlag KG Stuttgart · New York.

  13. Combined full field stress and strain measurement methods for granular materials

    Directory of Open Access Journals (Sweden)

    Broere W.

    2010-06-01

    Full Text Available The current paper re-introduces the photoelastic measurement method in experimental geomechanics. A full-field phase stepping polariscope suitable for geomechanical model tests has been developed. Additional constraints on the measurement and mechanical setup arising from geomechanical test conditions are outlined as well as the opportunity to measure the displacement fields in the sample with digital image correlation. The capability of the current setup in retrieving the stress and strain field in a granular material is demonstrated.

  14. Text extraction method for historical Tibetan document images based on block projections

    Science.gov (United States)

    Duan, Li-juan; Zhang, Xi-qun; Ma, Long-long; Wu, Jian

    2017-11-01

    Text extraction is an important initial step in digitizing the historical documents. In this paper, we present a text extraction method for historical Tibetan document images based on block projections. The task of text extraction is considered as text area detection and location problem. The images are divided equally into blocks and the blocks are filtered by the information of the categories of connected components and corner point density. By analyzing the filtered blocks' projections, the approximate text areas can be located, and the text regions are extracted. Experiments on the dataset of historical Tibetan documents demonstrate the effectiveness of the proposed method.

  15. A method for extracting design rationale knowledge based on Text Mining

    Directory of Open Access Journals (Sweden)

    Liu Jihong

    2017-01-01

    Full Text Available Capture design rationale (DR knowledge and presenting it to designers by good form, which have great significance for design reuse and design innovation. Since the 1970s design rationality began to develop, many teams have developed their own design rational system. However, the DR acquisition system is not intelligent enough, and it still requires designers to do a lot of operations. In addition, the existing design documents contain a large number of DR knowledge, but it has not been well excavated. Therefore, a method and system are needed to better extract DR knowledge in design documents. We have proposed a DRKH (design rationale knowledge hierarchy model for DR representation. The DRKH model has three layers, respectively as design intent layer, design decision layer and design basis layer. In this paper, we use text mining method to extract DR from design documents and construct DR model. Finally, the welding robot design specification is taken as an example to demonstrate the system interface.

  16. An information preserving method for producing full coverage CoRoT light curves

    Directory of Open Access Journals (Sweden)

    Pascual-Granado J.

    2015-01-01

    Full Text Available Invalid flux measurements, caused mainly by the South Atlantic Anomaly crossing of the CoRoT satellite, introduce aliases in the periodogram and wrong amplitudes. It has been demonstrated that replacing such invalid data with a linear interpolation is not harmless. On the other side, using power spectrum estimators for unevenly sampled time series is not only less computationally efficient but it leads to difficulties in the interpretation of the results. Therefore, even when the gaps are rather small and the duty cycle is high enough the use of gap-filling methods is a gain in frequency analysis. However, the method must preserve the information contained in the time series. In this work we give a short description of an information preserving method (MIARMA and show some results when applying it to CoRoT seismo light curves. The method is implemented as the second step of a pipeline for CoRoT data analysis.

  17. Full text publication rates of research abstracts presented at the European Society of Endodontology (ESE) Congresses in the last 20 years.

    Science.gov (United States)

    Tzanetakis, G N; Tzimpoulas, N; Floratos, S; Agrafioti, A; Kontakiotis, E G; Shemesh, H

    2017-06-26

    To evaluate the full-text publication rates of scientific research abstracts presented at the European Society of Endodontology (ESE) Congresses held between 1993 and 2013 (a total of 11 occasions) and to determine factors associated with the manuscripts. An electronic database search was conducted from January 2015 to December 2016 to identify full text English written publications of the research abstracts presented at the last 11 ESE Biennial Congresses from 1993 to 2013. For each occasion, research abstract information were retrieved from the International Endodontic Journal (IEJ) through the official website of the ESE and the following parameters for each abstract presentation were recorded: Year of presentation, first author's affiliation, geographic origin, and type of study. Following full-text article identification, additional information was recorded such as: Year and journal of publication, elapsed time until full publication and number of authors per presentation and publication. A total of 1165 research abstracts were presented, of which 401 (34.4%) were finally published as full-length articles. Overall 235 articles (58.6%) were published either in the International Endodontic Journal (IEJ, 35.7%) or Journal of Endodontics (JOE, 22.9%). The mean time between abstract presentation and full-text publication was 18.95 months. Munich (2001) had the highest publication rate (44%) whereas Lisbon (2013) had the highest number of published articles (77). Turkey was the country with the highest number of published abstracts (56). However, the Netherlands was the country with the highest number of publications related to the number of presentations (21/26) (80.7%). Differences in authorship between presentation and full publication were found in 179 (44.6%) articles. A substantial number of research abstracts presented at ESE congresses were not published in peer reviewed journals. Authors prefer to publish their research papers in international journals with

  18. Developing mobile phone text messages for tobacco risk communication among college students: a mixed methods study

    Directory of Open Access Journals (Sweden)

    Alexander V. Prokhorov

    2017-01-01

    Full Text Available Abstract Background Engaging young adults for the purpose of communicating health risks associated with nicotine and tobacco use can be challenging since they comprise a population heavily targeted with appealing marketing by the evolving tobacco industry. The Food and Drug Administration seeks novel ways to effectively communicate risks to warn about using these products. This paper describes the first step in developing a text messaging program delivered by smartphones that manipulate three messaging characteristics (i.e., depth, framing, and appeal. Methods Perceptions of community college students were described after previewing text messages designed to inform about risks of using conventional and new tobacco products. Thirty-one tobacco users and nonusers, aged 18–25 participated in five focus discussions held on two community college campuses. Attendees reviewed prototype messages and contributed feedback about text message structure and content. Qualitative data were coded and analyzed using NVivo Version 10. Results Most participants were female and two-thirds were ethnic minorities. A variety of conventional and new tobacco products in the past month were used by a third of participants. Three identified domains were derived from the qualitative data. These included perceived risks of using tobacco products, receptivity to message content, and logistical feedback regarding the future message campaign. Conclusion Overall, participants found the messages to be interesting and appropriate. A gap in awareness of the risks of using new tobacco products was revealed. Feedback on the prototype messages was incorporated into message revisions. These findings provided preliminary confirmation that the forthcoming messaging program will be appealing to young adults.

  19. A Denoising Method for LiDAR Full-Waveform Data

    Directory of Open Access Journals (Sweden)

    Xudong Lai

    2015-01-01

    Full Text Available Decomposition of LiDAR full-waveform data can not only enhance the density and positioning accuracy of a point cloud, but also provide other useful parameters, such as pulse width, peak amplitude, and peak position which are important information for subsequent processing. Full-waveform data usually contain some random noises. Traditional filtering algorithms always cause distortion in the waveform. λ/μ filtering algorithm is based on Mean Shift method. It can smooth the signal iteratively and will not cause any distortion in the waveform. In this paper, an improved λ/μ filtering algorithm is proposed, and several experiments on both simulated waveform data and real waveform data are implemented to prove the effectiveness of the proposed algorithm.

  20. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

    Science.gov (United States)

    Verspoor, Karin; Cohen, Kevin Bretonnel; Lanfranchi, Arrick; Warner, Colin; Johnson, Helen L; Roeder, Christophe; Choi, Jinho D; Funk, Christopher; Malenkiy, Yuriy; Eckert, Miriam; Xue, Nianwen; Baumgartner, William A; Bada, Michael; Palmer, Martha; Hunter, Lawrence E

    2012-08-17

    We introduce the linguistic annotation of a corpus of 97 full-text biomedical publications, known as the Colorado Richly Annotated Full Text (CRAFT) corpus. We further assess the performance of existing tools for performing sentence splitting, tokenization, syntactic parsing, and named entity recognition on this corpus. Many biomedical natural language processing systems demonstrated large differences between their previously published results and their performance on the CRAFT corpus when tested with the publicly available models or rule sets. Trainable systems differed widely with respect to their ability to build high-performing models based on this data. The finding that some systems were able to train high-performing models based on this corpus is additional evidence, beyond high inter-annotator agreement, that the quality of the CRAFT corpus is high. The overall poor performance of various systems indicates that considerable work needs to be done to enable natural language processing systems to work well when the input is full-text journal articles. The CRAFT corpus provides a valuable resource to the biomedical natural language processing community for evaluation and training of new models for biomedical full text publications.

  1. Fate of abstracts presented at a National Turkish Orthopedics and Traumatology Congress: publication rates and consistency of abstracts compared with their subsequent full-text publications.

    Science.gov (United States)

    Yalçınkaya, Merter; Bagatur, Erdem

    2013-01-01

    The aim of this study was to evaluate the publication rates of full-text articles after presentation of abstracts at a Turkish National Orthopaedics and Traumatology Congress, determine the time lag from the congress date to publication of full-text articles and assess the consistency between abstracts and the subsequent publications. All abstracts from the scientific program of the 20th Turkish National Orthopaedics and Traumatology Congress (2007) were identified and computerized PubMed searches were conducted to determine whether an abstract had been followed by publication of a full-text article and key features were compared to evaluate their consistency. The time lag to publication and the impact factors of the journals where the articles were published were noted. Of the 770 abstracts (264 oral, 506 poster presentations), 227 (29.5%) were followed by a full-text and 116 (44%) of the 264 oral and 111 (22%) of the 506 poster presentations were published. The mean time to publication was 14.9±16.075 (range: 33 to 55) months. Thirty-three (14.5%) were published prior to the presentation at the congress. The likelihood of publication decreased after the third year (26 of 227, 11.5%). A total of 182 (80.2%) articles showed inconsistencies with the abstract; 74 (32.6%) minor, 14 (6.2%) major, and 94 (41.4%) minor and major inconsistencies. The mean impact factor of the journals was 1.152±0.858. The vast majority of abstracts presented at this congress were not followed by publication of a full-text article. Additionally, frequent inconsistencies between the final published article and the original abstract indicated the inadequacy of quality of reporting in abstracts.

  2. Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.

    Science.gov (United States)

    Tsai, Richard Tzong-Han; Lai, Po-Ting

    2011-10-03

    Gene normalization (GN) is the task of identifying the unique database IDs of genes and proteins in literature. The best-known public competition of GN systems is the GN task of the BioCreative challenge, which has been held four times since 2003. The last two BioCreatives, II.5 & III, had two significant differences from earlier tasks: firstly, they provided full-length articles in addition to abstracts; and secondly, they included multiple species without providing species ID information. Full papers introduce more complex targets for GN processing, while the inclusion of multiple species vastly increases the potential size of dictionaries needed for GN. BioCreative III GN uses Threshold Average Precision at a median of k errors per query (TAP-k), a new measure closely related to the well-known average precision, but also reflecting the reliability of the score provided by each GN system. To use full-paper text, we employed a multi-stage GN algorithm and a ranking method which exploit information in different sections and parts of a paper. To handle the inclusion of multiple unknown species, we developed two context-based dynamic strategies to select dictionary entries related to the species that appear in the paper-section-wide and article-wide context. Our originally submitted BioCreative III system uses a static dictionary containing only the most common species entries. It already exceeds the BioCreative III average team performance by at least 24% in every evaluation. However, using our proposed dynamic dictionary strategies, we were able to further improve TAP-5, TAP-10, and TAP-20 by 16.47%, 13.57% and 6.01%, respectively in the Gold 50 test set. Our best dynamic strategy outperforms the best BioCreative III systems in TAP-10 on the Silver 50 test set and in TAP-5 on the Silver 507 set. Our experimental results demonstrate the superiority of our proposed dynamic dictionary selection strategies over our original static strategy and most BioCreative III

  3. METHODS OF TEXT INFORMATION CLASSIFICATION ON THE BASIS OF ARTIFICIAL NEURAL AND SEMANTIC NETWORKS

    Directory of Open Access Journals (Sweden)

    L. V. Serebryanaya

    2016-01-01

    Full Text Available The article covers the use of perseptron, Hopfild artificial neural network and semantic network for classification of text information. Network training algorithms are studied. An algorithm of inverse mistake spreading for perceptron network and convergence algorithm for Hopfild network are implemented. On the basis of the offered models and algorithms automatic text classification software is developed and its operation results are evaluated.

  4. A text zero-watermarking method based on keyword dense interval

    Science.gov (United States)

    Yang, Fan; Zhu, Yuesheng; Jiang, Yifeng; Qing, Yin

    2017-07-01

    Digital watermarking has been recognized as a useful technology for the copyright protection and authentication of digital information. However, rarely did the former methods focus on the key content of digital carrier. The idea based on the protection of key content is more targeted and can be considered in different digital information, including text, image and video. In this paper, we use text as research object and a text zero-watermarking method which uses keyword dense interval (KDI) as the key content is proposed. First, we construct zero-watermarking model by introducing the concept of KDI and giving the method of KDI extraction. Second, we design detection model which includes secondary generation of zero-watermark and the similarity computing method of keyword distribution. Besides, experiments are carried out, and the results show that the proposed method gives better performance than other available methods especially in the attacks of sentence transformation and synonyms substitution.

  5. ScienceCentral: open access full-text archive of scientific journals based on Journal Article Tag Suite regardless of their languages.

    Science.gov (United States)

    Huh, Sun

    2013-01-01

    ScienceCentral, a free or open access, full-text archive of scientific journal literature at the Korean Federation of Science and Technology Societies, was under test in September 2013. Since it is a Journal Article Tag Suite-based full text database, extensible markup language files of all languages can be presented, according to Unicode Transformation Format 8-bit encoding. It is comparable to PubMed Central: however, there are two distinct differences. First, its scope comprises all science fields; second, it accepts all language journals. Launching ScienceCentral is the first step for free access or open access academic scientific journals of all languages to leap to the world, including scientific journals from Croatia.

  6. Study on the Contra-Rotating Propeller system design and full-scale performance prediction method

    Directory of Open Access Journals (Sweden)

    Keh-Sik Min

    2009-09-01

    Full Text Available A ship's screw-propeller produces thrust by rotation and, at the same time, generates rotational flow behind the propeller. This rotational flow has no contribution to the generation of thrust, but instead produces energy loss. By recovering part of the lost energy in the rotational flow, therefore, it is possible to improve the propulsion efficiency. The contra-rotating propeller (CRP system is the representing example of such devices. Unfortunately, however, neither a design method nor a full-scale performance prediction procedure for the CRP system has been well established yet. The authors have long performed studies on the CRP system, and some of the results from the authors’ studies shall be presented and discussed.

  7. Conceptual Teaching Based on Scientific Storyline Method and Conceptual Change Texts: Latitude-Parallel Concepts

    Science.gov (United States)

    Uzunöz, Abdulkadir

    2018-01-01

    The purpose of this study is to identify the conceptual mistakes frequently encountered in teaching geography such as latitude-parallel concepts, and to prepare conceptual change text based on the Scientific Storyline Method, in order to resolve the identified misconceptions. In this study, the special case method, which is one of the qualitative…

  8. FULL GPU Implementation of Lattice-Boltzmann Methods with Immersed Boundary Conditions for Fast Fluid Simulations

    Directory of Open Access Journals (Sweden)

    G Boroni

    2017-03-01

    Full Text Available Lattice Boltzmann Method (LBM has shown great potential in fluid simulations, but performance issues and difficulties to manage complex boundary conditions have hindered a wider application. The upcoming of Graphic Processing Units (GPU Computing offered a possible solution for the performance issue, and methods like the Immersed Boundary (IB algorithm proved to be a flexible solution to boundaries. Unfortunately, the implicit IB algorithm makes the LBM implementation in GPU a non-trivial task. This work presents a fully parallel GPU implementation of LBM in combination with IB. The fluid-boundary interaction is implemented via GPU kernels, using execution configurations and data structures specifically designed to accelerate each code execution. Simulations were validated against experimental and analytical data showing good agreement and improving the computational time. Substantial reductions of calculation rates were achieved, lowering down the required time to execute the same model in a CPU to about two magnitude orders.

  9. A plastic collapse method for evaluating rotation capacity of full-restrained steel moment connections

    Directory of Open Access Journals (Sweden)

    Lee Kyungkoo

    2008-01-01

    Full Text Available An analytical method to model failure of steel beam plastic hinges due to local buckling and low-cycle fatigue is proposed herein. This method is based on the plastic collapse mechanism approach and a yield-line plastic hinge (YLPH model whose geometry is based on buckled shapes of beam plastic hinges observed in experiments. Two limit states, strength degradation failure induced by local buckling and low-cycle fatigue fracture, are considered. The proposed YLPH model was developed for FEMA-350 WUF-W, RBS and Free Flange connections and validated in comparisons to experimental data. This model can be used to estimate the seismic rotation capacity of fully restrained beam-column connections in special steel moment-resisting frames under both monotonic and cyclic loading conditions.

  10. The Fractal Patterns of Words in a Text: A Method for Automatic Keyword Extraction.

    Science.gov (United States)

    Najafi, Elham; Darooneh, Amir H

    2015-01-01

    A text can be considered as a one dimensional array of words. The locations of each word type in this array form a fractal pattern with certain fractal dimension. We observe that important words responsible for conveying the meaning of a text have dimensions considerably different from one, while the fractal dimensions of unimportant words are close to one. We introduce an index quantifying the importance of the words in a given text using their fractal dimensions and then ranking them according to their importance. This index measures the difference between the fractal pattern of a word in the original text relative to a shuffled version. Because the shuffled text is meaningless (i.e., words have no importance), the difference between the original and shuffled text can be used to ascertain degree of fractality. The degree of fractality may be used for automatic keyword detection. Words with the degree of fractality higher than a threshold value are assumed to be the retrieved keywords of the text. We measure the efficiency of our method for keywords extraction, making a comparison between our proposed method and two other well-known methods of automatic keyword extraction.

  11. The Fractal Patterns of Words in a Text: A Method for Automatic Keyword Extraction

    Science.gov (United States)

    Najafi, Elham; Darooneh, Amir H.

    2015-01-01

    A text can be considered as a one dimensional array of words. The locations of each word type in this array form a fractal pattern with certain fractal dimension. We observe that important words responsible for conveying the meaning of a text have dimensions considerably different from one, while the fractal dimensions of unimportant words are close to one. We introduce an index quantifying the importance of the words in a given text using their fractal dimensions and then ranking them according to their importance. This index measures the difference between the fractal pattern of a word in the original text relative to a shuffled version. Because the shuffled text is meaningless (i.e., words have no importance), the difference between the original and shuffled text can be used to ascertain degree of fractality. The degree of fractality may be used for automatic keyword detection. Words with the degree of fractality higher than a threshold value are assumed to be the retrieved keywords of the text. We measure the efficiency of our method for keywords extraction, making a comparison between our proposed method and two other well-known methods of automatic keyword extraction. PMID:26091207

  12. An Online Full-Body Motion Recognition Method Using Sparse and Deficient Signal Sequences

    Directory of Open Access Journals (Sweden)

    Chengyu Guo

    2014-01-01

    Full Text Available This paper presents a method to recognize continuous full-body human motion online by using sparse, low-cost sensors. The only input signals needed are linear accelerations without any rotation information, which are provided by four Wiimote sensors attached to the four human limbs. Based on the fused hidden Markov model (FHMM and autoregressive process, a predictive fusion model (PFM is put forward, which considers the different influences of the upper and lower limbs, establishes HMM for each part, and fuses them using a probabilistic fusion model. Then an autoregressive process is introduced in HMM to predict the gesture, which enables the model to deal with incomplete signal data. In order to reduce the number of alternatives in the online recognition process, a graph model is built that rejects parts of motion types based on the graph structure and previous recognition results. Finally, an online signal segmentation method based on semantics information and PFM is presented to finish the efficient recognition task. The results indicate that the method is robust with a high recognition rate of sparse and deficient signals and can be used in various interactive applications.

  13. Improving the precision of the keyword-matching pornographic text filtering method using a hybrid model.

    Science.gov (United States)

    Su, Gui-yang; Li, Jian-hua; Ma, Ying-hua; Li, Sheng-hong

    2004-09-01

    With the flooding of pornographic information on the Internet, how to keep people away from that offensive information is becoming one of the most important research areas in network information security. Some applications which can block or filter such information are used. Approaches in those systems can be roughly classified into two kinds: metadata based and content based. With the development of distributed technologies, content based filtering technologies will play a more and more important role in filtering systems. Keyword matching is a content based method used widely in harmful text filtering. Experiments to evaluate the recall and precision of the method showed that the precision of the method is not satisfactory, though the recall of the method is rather high. According to the results, a new pornographic text filtering model based on reconfirming is put forward. Experiments showed that the model is practical, has less loss of recall than the single keyword matching method, and has higher precision.

  14. An Observational Study of Abstracts Presented at the American College of Veterinary Surgeon Annual Meetings (2001-2008) and Their Subsequent Full-Text Publication.

    Science.gov (United States)

    Meyers, Katherine E; Lindem, Margaret J; Giuffrida, Michelle A

    2016-07-01

    To determine the frequency of abstracts presented at American College of Veterinary Surgeons (ACVS) meetings from 2001 to 2008 that were published as complete articles, to identify abstract characteristics associated with final full-text publication, and to examine consistency of information between abstracts and final full-text publications. Observational bibliographic study. Abstracts were retrieved from published proceedings. Published articles were retrieved from bibliographic databases. Features of abstract and article authorship, design, and content were recorded. Regression analysis identified abstract features associated with article publication, and evaluated consistency between abstracts and final publications. Seven hundred eighty-two of 1078 (73%) abstracts were published as complete articles. Median time to publication was 1 year; 90% were published within 3 years. Abstracts originating from academic institutions were published more often than abstracts from practice or industry sites (odds ratio 2.61, 95% confidence interval 1.68-4.05). Compared to their conference abstracts, 49% of articles contained major inconsistences including changes in study design, interventions, outcomes, sample size, and results. For each year elapsed between presentation and publication, the odds of major inconsistency increased 2.4 times (odds ratio 2.36, 95% confidence interval 1.57-3.55) for retrospective studies and 1.4 times (odds ratio 1.35, 95% confidence interval 1.17-1.56) for other study designs. Changes in study title and authorship were frequent, particularly in publications that contained major inconsistencies. ACVS abstracts were promptly and reliably published, but final full-text publications often differed substantially from the original abstracts. © Copyright 2016 by The American College of Veterinary Surgeons.

  15. Prediction of hyperbilirubinemia by noninvasive methods in full-term newborns

    Directory of Open Access Journals (Sweden)

    Danijela Furlan

    2013-02-01

    Full Text Available Introduction: The noninvasive screening methods for bilirubin determination were studied prospectively in a group of full-term healthy newborns with the aim of early prediction of pathological neonatal hyperbilirubinemia. Laboratory determination of bilirubin (Jendrassik-Grof (JG was compared to the noninvasive transcutaneous bilirubin (TcBIL together with the determination of bilirubin in cord blood.Methods: The study group consisted of 284 full-term healthy consecutively born infants in the period from March to June 2011. The whole group was divided into a group of physiological (n=199, and a group of pathological hyperbilirubinemia (n=85 according to the level of total bilirubin (220 μmol/L. Bilirubin in cord blood (CbBIL and from capillary blood at the age of three days was determined according to the JG, on the 3rd day TcBIL was also detected by Bilicheck bilirubinometer. The Kolmogorov-Smirnov and Mann-Whitney tests were used for the statistical analysis.Results: Bilirubin concentrations were statisti cally significantly different (CbBIL (p<0,001 on the 3rd day control sample (p<0,001, TcBil (p<0,001 between the groups of newborns with physiological (n=199 and pathological (n=85 hyperbilirubinemia. Using the cut-off value of cord blood bilirubin 28 μmol/L, we could predict the development of pathological hyperbiliru binemia with 98.8% prognostic specificity, and with 100% sensitivity that newborns will not require a phototherapy (all irradiated newborns were taken into account. We confirmed an excellent agreement between bilirubin concentrations determined by the TcBIL and JG methods for both groups of healthy full-term newborns.Conclusion: Based on our results, we could recommend that determination of the cord blood bilirubin in combination with the measurement of TcBIL should be implemented into practice for early prediction of pathological hyperbilirubinemia in full-term healthy newborns. The advantages of both methods in the routine

  16. Use of text messaging in general practice: a mixed methods investigation on GPs' and patients' views.

    Science.gov (United States)

    Leahy, Dorothy; Lyons, Aoife; Dahm, Matthias; Quinlan, Diarmuid; Bradley, Colin

    2017-11-01

    Text messaging has become more prevalent in general practice as a tool with which to communicate with patients. The main objectives were to assess the extent, growth, and perceived risks and benefits of text messaging by GPs to communicate with patients, and assess patients' attitudes towards receiving text messages from their GP. A mixed methods study, using surveys, a review, and a focus group, was conducted in both urban and rural practices in the south-west of Ireland. A telephone survey of 389 GPs was conducted to ascertain the prevalence of text messaging. Subsequently, the following were also carried out: additional telephone surveys with 25 GPs who use text messaging and 26 GPs who do not, a written satisfaction survey given to 78 patients, a review of the electronic information systems of five practices, and a focus group with six GPs to ascertain attitudes towards text messaging. In total, 38% ( n = 148) of the surveyed GPs used text messaging to communicate with patients and 62% ( n = 241) did not. Time management was identified as the key advantage of text messaging among GPs who used it (80%; n = 20) and those who did not (50%; n = 13). Confidentiality was reported as the principal concern among both groups, at 32% ( n = 8) and 69% ( n = 18) respectively. Most patients (99%; n = 77) were happy to receive text messages from their GP. The GP focus group identified similar issues and benefits in terms of confidentiality and time management. Data were extracted from the IT systems of five consenting practices and the number of text messages sent during the period from January 2013 to March 2016 was generated. This increased by 40% per annum. Collaborative efforts are required from relevant policymakers to address data protection and text messaging issues so that GPs can be provided with clear guidelines to protect patient confidentiality. © British Journal of General Practice 2017.

  17. Process Research Methods and Their Application in the Didactics of Text Production and Translation

    DEFF Research Database (Denmark)

    Dam-Jensen, Helle; Heine, Carmen

    2009-01-01

    not only as learners, but also as thinkers and problem solvers. This can be achieved by systematically applying knowledge from process research as this can give insight into mental and physical processes of text production. This article provides an overview of methods commonly used in process research...

  18. http://www.isarder.org/isardercom/2013vol5issue1/vol5_issue1_article06full_text.PDF

    Directory of Open Access Journals (Sweden)

    Suat TEKER

    2013-03-01

    Full Text Available This study has pointed out that a new version of Build-Operate-Transfer (BOT financing model generated out from classical BOT model can be used for highway financing. The classical BOT, one of the most popular PPP models has been oftenly employed by various countries for financing of large scale public projects. Over the last 20 year period a number of infrastructure projects in Turkey such as natural gas plants, airports and hydro electric power plants were constructed by using BOT model. In this study, the new version of BOT model is implemented on the projected Ankara-İzmir Highway Project. This highway project can be constructed at a lower project cost by using the suggested BOT model compared to the classical BOT model. Therefore, the lower project cost results in a lower toll rate.

  19. Equilibrium and dynamic methods when comparing an English text and its Esperanto translation

    Science.gov (United States)

    Ausloos, M.

    2008-11-01

    A comparison of two English texts written by Lewis Carroll, one (Alice in Wonderland), also translated into Esperanto, the other (Through the Looking Glass) are discussed in order to observe whether natural and artificial languages significantly differ from each other. One dimensional time series like signals are constructed using only word frequencies (FTS) or word lengths (LTS). The data is studied through (i) a Zipf method for sorting out correlations in the FTS and (ii) a Grassberger-Procaccia (GP) technique based method for finding correlations in LTS. The methods correspond to an equilibrium and a dynamic approach respectively to human texts features. There are quantitative statistical differences between the original English text and its Esperanto translation, but the qualitative differences are very minutes. However different power laws are observed with characteristic exponents for the ranking properties, and the phase space attractor dimensionality. The Zipf exponent can take values much less than unity (∼0.50 or 0.30) depending on how a sentence is defined. This variety in exponents can be conjectured to be an intrinsic measure of the book style or purpose, rather than the language or author vocabulary richness, since a similar exponent is obtained whatever the text. Moreover the attractor dimension r is a simple function of the so called phase space dimension n, i.e., r=nλ, with λ=0.79. Such an exponent could also be conjectured to be a measure of the author style versatility, - here well preserved in the translation.

  20. Daily text messages used as a method for assessing low back pain among workers.

    Science.gov (United States)

    Burström, Lage; Jonsson, Håkan; Björ, Bodil; Hjalmarsson, Ulla; Nilsson, Tohr; Reuterwall, Christina; Wahlström, Jens

    2016-02-01

    To evaluate a method for collecting data concerning low back pain (LBP) using daily text messages and to characterize the reported LBP in terms of intensity, variability, and episodes. We conducted a cohort study of LBP among workers used by a mining company. The participants were asked to answer the question "How much pain have you had in your lower back in the last 24 hours on a scale from 0 to 10, where 0 = no pain and 10 = the worst pain imaginable" once a day for 5 weeks, with this process being repeated 6 months later. A total of 121 workers participated in the first period of data collection, and 108 participated in the second period. The daily response rate was 93% for both periods, and cluster analysis was shown to be a feasible statistical method for clustering LBP into subgroups of low, medium, and high pain. The daily text messages method also worked well for assessing the episodic nature of LBP. We have demonstrated a method for repeatedly measuring of LBP using daily text messages. The data permitted clustering into subgroups and could be used to define episodes of LBP. Copyright © 2016 Elsevier Inc. All rights reserved.

  1. A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text

    Science.gov (United States)

    Miwa, Makoto; Ohta, Tomoko; Rak, Rafal; Rowley, Andrew; Kell, Douglas B.; Pyysalo, Sampo; Ananiadou, Sophia

    2013-01-01

    Motivation: To create, verify and maintain pathway models, curators must discover and assess knowledge distributed over the vast body of biological literature. Methods supporting these tasks must understand both the pathway model representations and the natural language in the literature. These methods should identify and order documents by relevance to any given pathway reaction. No existing system has addressed all aspects of this challenge. Method: We present novel methods for associating pathway model reactions with relevant publications. Our approach extracts the reactions directly from the models and then turns them into queries for three text mining-based MEDLINE literature search systems. These queries are executed, and the resulting documents are combined and ranked according to their relevance to the reactions of interest. We manually annotate document-reaction pairs with the relevance of the document to the reaction and use this annotation to study several ranking methods, using various heuristic and machine-learning approaches. Results: Our evaluation shows that the annotated document-reaction pairs can be used to create a rule-based document ranking system, and that machine learning can be used to rank documents by their relevance to pathway reactions. We find that a Support Vector Machine-based system outperforms several baselines and matches the performance of the rule-based system. The success of the query extraction and ranking methods are used to update our existing pathway search system, PathText. Availability: An online demonstration of PathText 2 and the annotated corpus are available for research purposes at http://www.nactem.ac.uk/pathtext2/. Contact: makoto.miwa@manchester.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. PMID:23813008

  2. Text mining for search term development in systematic reviewing: A discussion of some methods and challenges.

    Science.gov (United States)

    Stansfield, Claire; O'Mara-Eves, Alison; Thomas, James

    2017-09-01

    Using text mining to aid the development of database search strings for topics described by diverse terminology has potential benefits for systematic reviews; however, methods and tools for accomplishing this are poorly covered in the research methods literature. We briefly review the literature on applications of text mining for search term development for systematic reviewing. We found that the tools can be used in 5 overarching ways: improving the precision of searches; identifying search terms to improve search sensitivity; aiding the translation of search strategies across databases; searching and screening within an integrated system; and developing objectively derived search strategies. Using a case study and selected examples, we then reflect on the utility of certain technologies (term frequency-inverse document frequency and Termine, term frequency, and clustering) in improving the precision and sensitivity of searches. Challenges in using these tools are discussed. The utility of these tools is influenced by the different capabilities of the tools, the way the tools are used, and the text that is analysed. Increased awareness of how the tools perform facilitates the further development of methods for their use in systematic reviews. Copyright © 2017 John Wiley & Sons, Ltd.

  3. "INTRODUCING A FULL VALIDATED ANALYTICAL PROCEDURE AS AN OFFICIAL COMPENDIAL METHOD FOR FENTANYL TRANSDERMAL PATCHES"

    Directory of Open Access Journals (Sweden)

    Amir Mehdizadeh

    2005-04-01

    Full Text Available A simple, sensitive and specific HPLC method and also a simple and fast extraction procedure were developed for quantitative analysis of fentanyl transdermal patches. Chloroform, methanol and ethanol were used as extracting solvents with recovery percent of 92.1, 94.3 and 99.4% respectively. Fentanyl was extracted with ethanol and the eluted fentanyl through the C18 column was monitored by UV detection at 230 nm. The linearity was at the range of 0.5-10 µg/mL with correlation coefficient (r2 of 0.9992. Both intra and inter-day accuracy and precision were within acceptable limits. The detection limit (DL and quantitation limit (QL were 0.15 and 0.5 µg/mL, respectively. Other validation characteristics such as selectivity, robustness and ruggedness were evaluated. Following method validation, a system suitability test (SST including capacity factor (k´, plate number (N, tailing factor (T, and RSD was defined for routine test.

  4. A Systematic Method to Synthesize New Transformerless Full-bridge Grid-tied Inverters

    DEFF Research Database (Denmark)

    Wang, Hongliang; Burton, Sarah; Liu, Yan-Fei

    2014-01-01

    Many inverter topologies have been proposed to eliminate the leakage current of transformerless Full Bridge Grid-Tied photovoltaic (PV) inverters. These include implementations such as the H5, H6, and HERIC topologies, among others. In this paper, a new full bridge topology synthesis method, called...... the MN synthesis method, is proposed. The MN method introduces two criteria that can be used to synthesize all of the possible topologies, including the existing topologies as well as new simplified topologies. This method concludes that there are only 15 simplified topologies available. Most simplified...... topologies from MN method have been verified by existing papers and patents....

  5. Conversion rates of abstracts presented at the Urological Society of Australia and New Zealand (USANZ) Annual Scientific Meeting into full-text journal articles.

    Science.gov (United States)

    Yoon, Peter D; Chalasani, Venu; Woo, Henry H

    2012-08-01

    What's known on the subject? and What does the study add? It is well known that the transition of a presented abstract in a scientific meeting to a journal article improves the quality of the meeting and prevents an abstract being incorporated into meta-analyses or practice guidelines without proper appraisal. This is the first analysis of USANZ Annual Scientific Meeting abstracts' conversion to full publication. With relatively low publication rates compared to other international meetings, this review identifies the need for mechanisms to encourage USANZ researchers to convert their abstracts into published articles. The numbers and characteristics of the abstracts presented at the Annual Scientific Meetings (ASM) of the Urological Society of Australia and New Zealand (USANZ) that are converted to peer-reviewed publications have not previously been analysed and published. We undertook a review of all abstracts presented at the USANZ ASM from 2005 to 2009. A PubMed search was performed between 15 June and 15 July 2012, using a search algorithm to identify the full-text publications of the presented abstracts. Correlation between abstract characteristics and publication rate was then examined to distinguish the predictors for publications. Of 614 abstracts that were presented at USANZ ASM between 2005 and 2009, 183 papers were published, giving a publication rate of 29.80%. The papers were predominantly published in urological journals and were more likely to be published if they were presented by an international author or were retrospective studies or if basic science research. The mean (SD) time to publication was 14.46 (13.89) months and the mean Impact Factor of journals where papers were published was 2.90. The overall publication rate was relatively low compared with other urological meetings held in America and Europe. USANZ has a challenge of encouraging higher-quality research from the authors to further enhance its publication rate and consequently the

  6. Happiness in texting times: SMS as a method to track national levels of happiness

    Directory of Open Access Journals (Sweden)

    David eHevey

    2015-09-01

    Full Text Available Assessing national levels of happiness has become an important research and policy issue in recent years. We examined happiness and satisfaction in Ireland using phone text messaging to collect large-scale longitudinal data from 3,093 members of the general Irish population. For six consecutive weeks participants’ happiness and satisfaction levels were assessed. For four consecutive weeks (weeks 2 to 5 a different random third of the sample got feedback on the previous week's mean happiness and satisfaction ratings. Text messaging proved a feasible means of assessing happiness and satisfaction, with almost three quarters (73% of participants completing all assessments. Those who received feedback on the previous week’s mean ratings were eight times more likely to complete the subsequent assessments than those not receiving feedback. Providing such feedback data on mean levels of happiness and satisfaction did not systematically bias subsequent ratings either towards or away from these normative anchors. Texting is a simple and effective means to collect population level happiness and satisfaction data.

  7. A Feature Selection Method Based on Fisher's Discriminant Ratio for Text Sentiment Classification

    Science.gov (United States)

    Wang, Suge; Li, Deyu; Wei, Yingjie; Li, Hongxia

    With the rapid growth of e-commerce, product reviews on the Web have become an important information source for customers' decision making when they intend to buy some product. As the reviews are often too many for customers to go through, how to automatically classify them into different sentiment orientation categories (i.e. positive/negative) has become a research problem. In this paper, based on Fisher's discriminant ratio, an effective feature selection method is proposed for product review text sentiment classification. In order to validate the validity of the proposed method, we compared it with other methods respectively based on information gain and mutual information while support vector machine is adopted as the classifier. In this paper, 6 subexperiments are conducted by combining different feature selection methods with 2 kinds of candidate feature sets. Under 1006 review documents of cars, the experimental results indicate that the Fisher's discriminant ratio based on word frequency estimation has the best performance with F value 83.3% while the candidate features are the words which appear in both positive and negative texts.

  8. Topic models: A novel method for modeling couple and family text data

    Science.gov (United States)

    Atkins, David C.; Rubin, Tim N.; Steyvers, Mark; Doeden, Michelle A.; Baucom, Brian R.; Christensen, Andrew

    2012-01-01

    Couple and family researchers often collect open-ended linguistic data – either through free response questionnaire items or transcripts of interviews or therapy sessions. Because participant's responses are not forced into a set number of categories, text-based data can be very rich and revealing of psychological processes. At the same time it is highly unstructured and challenging to analyze. Within family psychology analyzing text data typically means applying a coding system, which can quantify text data but also has several limitations, including the time needed for coding, difficulties with inter-rater reliability, and defining a priori what should be coded. The current article presents an alternative method for analyzing text data called topic models (Steyvers & Griffiths, 2006), which has not yet been applied within couple and family psychology. Topic models have similarities with factor analysis and cluster analysis in that topic models identify underlying clusters of words with semantic similarities (i.e., the “topics”). In the present article, a non-technical introduction to topic models is provided, highlighting how these models can be used for text exploration and indexing (e.g., quickly locating text passages that share semantic meaning) and how output from topic models can be used to predict behavioral codes or other types of outcomes. Throughout the article a collection of transcripts from a large couple therapy trial (Christensen et al., 2004) is used as example data to highlight potential applications. Practical resources for learning more about topic models and how to apply them are discussed. PMID:22888778

  9. Micro-seismic imaging using a source function independent full waveform inversion method

    KAUST Repository

    Wang, Hanchen; Alkhalifah, Tariq Ali

    2018-01-01

    hand, the conventional micro-seismic source locating methods require, in many cases manual picking of traveltime arrivals, which do not only lead to manual effort and human interaction, but also prone to errors. Using full waveform inversion (FWI

  10. A Web text acquisition method%基于Delphi的Web文本获取方法

    Institute of Scientific and Technical Information of China (English)

    刘建培

    2016-01-01

    提出基于delphi的Web文本获取方法,从网页中获取Web页面格式的源文件(.html文件),分析它的结构信息,处理它的控制符,通过分析过滤源文件的格式来提取网页中的文本信息。利用标点符号对文本信息进行章节、段落、句子等预处理,将文本信息转换成句子序列,让用户快速地定位到需要了解的内容,从而让用户远离钓鱼网站、恶意广告、欺诈信息以及在浏览网页内容时产生的骚扰,提高互联网体验。%In this paper, a method of Web text acquisition with Delphi is proposed, which obtains the source files of the Web page format (.Html file) from the Web page, analyzes its structure information, deals with its control character, and extracts the text information from the Web page by analyzing and filtering the source files’ formats. The method makes use of punctuation marks to preprocess the text information for sections, paragraphs and sentences, converts the text information into sentence sequences, which allows the users to quickly navigate to the contents needed to know, allows the users to stay away from phishing sites, malicious advertising, fraud information and the harassment generated by browsing the content of Web pages, and improves their Internet experience.

  11. Text-in-context: a method for extracting findings in mixed-methods mixed research synthesis studies.

    Science.gov (United States)

    Sandelowski, Margarete; Leeman, Jennifer; Knafl, Kathleen; Crandell, Jamie L

    2013-06-01

    Our purpose in this paper is to propose a new method for extracting findings from research reports included in mixed-methods mixed research synthesis studies. International initiatives in the domains of systematic review and evidence synthesis have been focused on broadening the conceptualization of evidence, increased methodological inclusiveness and the production of evidence syntheses that will be accessible to and usable by a wider range of consumers. Initiatives in the general mixed-methods research field have been focused on developing truly integrative approaches to data analysis and interpretation. The data extraction challenges described here were encountered, and the method proposed for addressing these challenges was developed, in the first year of the ongoing (2011-2016) study: Mixed-Methods Synthesis of Research on Childhood Chronic Conditions and Family. To preserve the text-in-context of findings in research reports, we describe a method whereby findings are transformed into portable statements that anchor results to relevant information about sample, source of information, time, comparative reference point, magnitude and significance and study-specific conceptions of phenomena. The data extraction method featured here was developed specifically to accommodate mixed-methods mixed research synthesis studies conducted in nursing and other health sciences, but reviewers might find it useful in other kinds of research synthesis studies. This data extraction method itself constitutes a type of integration to preserve the methodological context of findings when statements are read individually and in comparison to each other. © 2012 Blackwell Publishing Ltd.

  12. Semantic text relatedness on Al-Qur’an translation using modified path based method

    Science.gov (United States)

    Irwanto, Yudi; Arif Bijaksana, Moch; Adiwijaya

    2018-03-01

    Abdul Baquee Muhammad [1] have built Corpus that contained AlQur’an domain, WordNet and dictionary. He has did initialisation in the development of knowledges about AlQur’an and the knowledges about relatedness between texts in AlQur’an. The Path based measurement method that proposed by Liu, Zhou and Zheng [3] has never been used in the AlQur’an domain. By using AlQur’an translation dataset in this research, the path based measurement method proposed by Liu, Zhou and Zheng [3] will be used to test this method in AlQur’an domain to obtain similarity values and to measure its correlation value. In this study the degree value is proposed to be used in modifying the path based method that proposed in previous research. Degree Value is the number of links that owned by a lcs (lowest common subsumer) node on a taxonomy. The links owned by a node on the taxonomy represent the semantic relationship that a node has in the taxonomy. By using degree value to modify the path-based method that proposed in previous research is expected that the correlation value obtained will increase. After running some experiment by using proposed method, the correlation measurement value can obtain fairly good correlation ties with 200 Word Pairs derive from Noun POS SimLex-999. The correlation value that be obtained is 93.3% which means their bonds are strong and they have very strong correlation. Whereas for the POS other than Noun POS vocabulary that owned by WordNet is incomplete therefore many pairs of words that the value of its similarity is zero so the correlation value is low.

  13. Review: David Silverman (2006. Interpreting Qualitative Data: Methods for Analysing Talk, Text and Interaction

    Directory of Open Access Journals (Sweden)

    Paul Ten Have

    2008-01-01

    Full Text Available This edition of SILVERMAN's well-known book offers a wide-ranging introduction to the problems facing any qualitative researcher, especially as concerns the design of qualitative projects and the analysis of qualitative data. It is in many ways a personal book, often referring to the author's own experience and reflecting his own intellectual development. He is clear about his preferences and doubts, but offers good arguments for both. While it is presented as a textbook for undergraduates, it may be considered too demanding intellectually in some cases. The review offers an extensive overview of the book's contents, in order to facilitate a teacher's choice of it as a course book, but it is recommended without reservation to any serious qualitative researcher. URN: urn:nbn:de:0114-fqs0801160

  14. The Virtual Fields Method Extracting Constitutive Mechanical Parameters from Full-field Deformation Measurements

    CERN Document Server

    Pierron, Fabrice

    2012-01-01

    The Virtual Fields Method: Extracting Constitutive Mechanical Parameters from Full-field Deformation Measurements is the first book on the Virtual Fields Method (VFM), a technique to identify materials mechanical properties from full-field measurements. Firmly rooted with extensive theoretical description of the method, the book presents numerous examples of application to a wide range of materials (composites, metals, welds, biomaterials) and situations (static, vibration, high strain rate). The authors give a detailed training section with examples of progressive difficulty to lead the reader to program the VFM and include a set of commented Matlab programs as well as GUI Matlab-based software for more general situations. The Virtual Fields Method: Extracting Constitutive Mechanical Parameters from Full-field Deformation Measurements is an ideal book for researchers, engineers, and students interested in applying the VFM to new situations motivated by their research.  

  15. Impact of Costing and Cost Analysis Methods on the Result of the Period: Methods Based on Full Cost Theory

    Directory of Open Access Journals (Sweden)

    Toma Maria

    2017-01-01

    In light of the above, in the present paper we have proposed that objectives, to approach the methods of calculating full costs (economic or traditional, and comparing them to determine the effect they have on the outcome of the period.

  16. The essential theory of fast wave current drive with full wave method

    International Nuclear Information System (INIS)

    Liu Yan; Gong Xueyu; Yang Lei; Yin Chenyan; Yin Lan

    2007-01-01

    The full wave numerical method is developed for analyzing fast wave current drive in the range of ion cyclotron waves in tokamak plasmas, taking into account finite larmor radius effects and parallel dispersion. the physical model, the dispersion relation on the assumption of Finite Larmor Radius (FLR) effects and the form of full wave be used for computer simulation are developed. All of the work will contribute to further study of fast wave current drive. (authors)

  17. BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs

    Directory of Open Access Journals (Sweden)

    Tsafnat Guy

    2011-04-01

    Full Text Available Abstract Background The identification of drug characteristics is a clinically important task, but it requires much expert knowledge and consumes substantial resources. We have developed a statistical text-mining approach (BInary Characteristics Extractor and biomedical Properties Predictor: BICEPP to help experts screen drugs that may have important clinical characteristics of interest. Results BICEPP first retrieves MEDLINE abstracts containing drug names, then selects tokens that best predict the list of drugs which represents the characteristic of interest. Machine learning is then used to classify drugs using a document frequency-based measure. Evaluation experiments were performed to validate BICEPP's performance on 484 characteristics of 857 drugs, identified from the Australian Medicines Handbook (AMH and the PharmacoKinetic Interaction Screening (PKIS database. Stratified cross-validations revealed that BICEPP was able to classify drugs into all 20 major therapeutic classes (100% and 157 (of 197 minor drug classes (80% with areas under the receiver operating characteristic curve (AUC > 0.80. Similarly, AUC > 0.80 could be obtained in the classification of 173 (of 238 adverse events (73%, up to 12 (of 15 groups of clinically significant cytochrome P450 enzyme (CYP inducers or inhibitors (80%, and up to 11 (of 14 groups of narrow therapeutic index drugs (79%. Interestingly, it was observed that the keywords used to describe a drug characteristic were not necessarily the most predictive ones for the classification task. Conclusions BICEPP has sufficient classification power to automatically distinguish a wide range of clinical properties of drugs. This may be used in pharmacovigilance applications to assist with rapid screening of large drug databases to identify important characteristics for further evaluation.

  18. Nouvelles méthodes d'identification des fractures par diagraphie acoustique en full wave form New Methods of Identifying Fractures by Full Wave Form Acoustic Logging

    Directory of Open Access Journals (Sweden)

    Denis A.

    2006-11-01

    Full Text Available Les outils acoustiques de dernière génération permettent maintenant d'enregistrer l'ensemble des ondes générées par une source acoustique à l'intérieur d'une géométrie cylindrique telle qu'un puits de sondage. Le train d'onde qu'il est alors possible d'analyser se compose successivement de trois composantes majeures (l'onde de compression, de cisaillement et de Stoneley dont nous avons une représentation pour chaque position de la sonde à l'intérieur du puits. Nous présentons, dans ce texte, trois méthodes originales et rapides (calculs possibles sur le site même pour identifier, à partir du traitement de l'onde de Stoneley, les fractures ouvertes recoupées par un forage. Nous donnons, dans un premier temps, nos motivations pour le choix unique du traitement de l'onde de Stoneley pour, dans un deuxième temps, exposer les trois méthodes développées et montrer pour chacune d'entre elles une application pratique. Interest in recognizing and identifying fractures in a coherent formation for the petroleum, geothermal and storage (oil and gas, wastes sectors has led to the development of indirect prospection methods inside boreholes such as acoustic logging. The latest acoustic tools are capable of recording all waves generated by an acoustic logging tool inside a cyclindrical geometry such as a borehole. The wavetrain that can then be analyzed is successively made up of three major components (the P compression wave, the S shear wave and the Stoneley wave for which we have a representation for each position of the logging tool in the borehole. An example of a recording is shown in Fig. 1. Because of its specific features (high amplitudes, low frequency, high signal-to-noise ratio, the Stoneley wave is recognized to be a good indicator of open fractures. Therefore, we use simple digital processing to quantify the influence of fracturing on the propagation of the Stoneley wave. Three methods stemming from the digital processing of

  19. Wide-angle full-vector beam propagation method based on an alternating direction implicit preconditioner

    Science.gov (United States)

    Chui, Siu Lit; Lu, Ya Yan

    2004-03-01

    Wide-angle full-vector beam propagation methods (BPMs) for three-dimensional wave-guiding structures can be derived on the basis of rational approximants of a square root operator or its exponential (i.e., the one-way propagator). While the less accurate BPM based on the slowly varying envelope approximation can be efficiently solved by the alternating direction implicit (ADI) method, the wide-angle variants involve linear systems that are more difficult to handle. We present an efficient solver for these linear systems that is based on a Krylov subspace method with an ADI preconditioner. The resulting wide-angle full-vector BPM is used to simulate the propagation of wave fields in a Y branch and a taper.

  20. Full waveform inversion using oriented time-domain imaging method for vertical transverse isotropic media

    KAUST Repository

    Zhang, Zhendong

    2017-07-11

    Full waveform inversion for reection events is limited by its linearized update re-quirements given by a process equivalent to migration. Unless the background velocity model is reasonably accurate, the resulting gradient can have an inaccurate update direction leading the inversion to converge what we refer to as local minima of the objective function. In our approach, we consider mild lateral variation in the model, and thus, use a gradient given by the oriented time-domain imaging method. Specifically, we apply the oriented time-domain imaging on the data residual to obtain the geometrical features of the velocity perturbation. After updating the model in the time domain, we convert the perturbation from the time domain to depth using the average velocity. Considering density is constant, we can expand the conventional 1D impedance inversion method to 2D or 3D velocity inversion within the process of full waveform inversion. This method is not only capable of inverting for velocity, but it is also capable of retrieving anisotropic parameters relying on linearized representations of the reection response. To eliminate the cross-talk artifacts between different parameters, we utilize what we consider being an optimal parametrization for this step. To do so, we extend the prestack time-domain migration image in incident angle dimension to incorporate angular dependence needed by the multiparameter inversion. For simple models, this approach provides an efficient and stable way to do full waveform inversion or modified seismic inversion and makes the anisotropic inversion more practicable. The proposed method still needs kinematically accurate initial models since it only recovers the high-wavenumber part as conventional full waveform inversion method does. Results on synthetic data of isotropic and anisotropic cases illustrate the benefits and limitations of this method.

  1. Full quantitative phase analysis of hydrated lime using the Rietveld method

    International Nuclear Information System (INIS)

    Lassinantti Gualtieri, Magdalena; Romagnoli, Marcello; Miselli, Paola; Cannio, Maria; Gualtieri, Alessandro F.

    2012-01-01

    Full quantitative phase analysis (FQPA) using X-ray powder diffraction and Rietveld refinements is a well-established method for the characterization of various hydraulic binders such as Portland cement and hydraulic limes. In this paper, the Rietveld method is applied to hydrated lime, a non-hydraulic traditional binder. The potential presence of an amorphous phase in this material is generally ignored. Both synchrotron radiation and a conventional X-ray source were used for data collection. The applicability of the developed control file for the Rietveld refinements was investigated using samples spiked with glass. The results were cross-checked by other independent methods such as thermal and chemical analyses. The sample microstructure was observed by transmission electron microscopy. It was found that the consistency between the different methods was satisfactory, supporting the validity of FQPA for this material. For the samples studied in this work, the amount of amorphous material was in the range 2–15 wt.%.

  2. Full quantitative phase analysis of hydrated lime using the Rietveld method

    Energy Technology Data Exchange (ETDEWEB)

    Lassinantti Gualtieri, Magdalena, E-mail: magdalena.gualtieri@unimore.it [Dipartimento Ingegneria dei Materiali e dell' Ambiente, Universita Degli Studi di Modena e Reggio Emilia, Via Vignolese 905/a, I-41100 Modena (Italy); Romagnoli, Marcello; Miselli, Paola; Cannio, Maria [Dipartimento Ingegneria dei Materiali e dell' Ambiente, Universita Degli Studi di Modena e Reggio Emilia, Via Vignolese 905/a, I-41100 Modena (Italy); Gualtieri, Alessandro F. [Dipartimento di Scienze della Terra, Universita Degli Studi di Modena e Reggio Emilia, I-41100 Modena (Italy)

    2012-09-15

    Full quantitative phase analysis (FQPA) using X-ray powder diffraction and Rietveld refinements is a well-established method for the characterization of various hydraulic binders such as Portland cement and hydraulic limes. In this paper, the Rietveld method is applied to hydrated lime, a non-hydraulic traditional binder. The potential presence of an amorphous phase in this material is generally ignored. Both synchrotron radiation and a conventional X-ray source were used for data collection. The applicability of the developed control file for the Rietveld refinements was investigated using samples spiked with glass. The results were cross-checked by other independent methods such as thermal and chemical analyses. The sample microstructure was observed by transmission electron microscopy. It was found that the consistency between the different methods was satisfactory, supporting the validity of FQPA for this material. For the samples studied in this work, the amount of amorphous material was in the range 2-15 wt.%.

  3. Impact mitigation using kinematic constraints and the full space parameterization method

    Energy Technology Data Exchange (ETDEWEB)

    Morgansen, K.A.; Pin, F.G.

    1996-02-01

    A new method for mitigating unexpected impact of a redundant manipulator with an object in its environment is presented. Kinematic constraints are utilized with the recently developed method known as Full Space Parameterization (FSP). System performance criterion and constraints are changed at impact to return the end effector to the point of impact and halt the arm. Since large joint accelerations could occur as the manipulator is halted, joint acceleration bounds are imposed to simulate physical actuator limitations. Simulation results are presented for the case of a simple redundant planar manipulator.

  4. Laser induced ultrasonic phased array using full matrix capture data acquisition and total focusing method.

    Science.gov (United States)

    Stratoudaki, Theodosia; Clark, Matt; Wilcox, Paul D

    2016-09-19

    Laser ultrasonics is a technique where lasers are employed to generate and detect ultrasound. A data collection method (full matrix capture) and a post processing imaging algorithm, the total focusing method, both developed for ultrasonic arrays, are modified and used in order to enhance the capabilities of laser ultrasonics for nondestructive testing by improving defect detectability and increasing spatial resolution. In this way, a laser induced ultrasonic phased array is synthesized. A model is developed and compared with experimental results from aluminum samples with side drilled holes and slots at depths of 5 - 20 mm from the surface.

  5. Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse.

    Science.gov (United States)

    Garcelon, Nicolas; Neuraz, Antoine; Benoit, Vincent; Salomon, Rémi; Burgun, Anita

    2017-05-01

    The repurposing of electronic health records (EHRs) can improve clinical and genetic research for rare diseases. However, significant information in rare disease EHRs is embedded in the narrative reports, which contain many negated clinical signs and family medical history. This paper presents a method to detect family history and negation in narrative reports and evaluates its impact on selecting populations from a clinical data warehouse (CDW). We developed a pipeline to process 1.6 million reports from multiple sources. This pipeline is part of the load process of the Necker Hospital CDW. We identified patients with "Lupus and diarrhea," "Crohn's and diabetes," and "NPHP1" from the CDW. The overall precision, recall, specificity, and F-measure were 0.85, 0.98, 0.93, and 0.91, respectively. The proposed method generates a highly accurate identification of cases from a CDW of rare disease EHRs. © The Author 2016. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com

  6. Single-Phase Full-Wave Rectifier as an Effective Example to Teach Normalization, Conduction Modes, and Circuit Analysis Methods

    Directory of Open Access Journals (Sweden)

    Predrag Pejovic

    2013-12-01

    Full Text Available Application of a single phase rectifier as an example in teaching circuit modeling, normalization, operating modes of nonlinear circuits, and circuit analysis methods is proposed.The rectifier supplied from a voltage source by an inductive impedance is analyzed in the discontinuous as well as in the continuous conduction mode. Completely analytical solution for the continuous conduction mode is derived. Appropriate numerical methods are proposed to obtain the circuit waveforms in both of the operating modes, and to compute the performance parameters. Source code of the program that performs such computation is provided.

  7. Large Airborne Full Tensor Gradient Data Inversion Based on a Non-Monotone Gradient Method

    Science.gov (United States)

    Sun, Yong; Meng, Zhaohai; Li, Fengting

    2018-03-01

    Following the development of gravity gradiometer instrument technology, the full tensor gravity (FTG) data can be acquired on airborne and marine platforms. Large-scale geophysical data can be obtained using these methods, making such data sets a number of the "big data" category. Therefore, a fast and effective inversion method is developed to solve the large-scale FTG data inversion problem. Many algorithms are available to accelerate the FTG data inversion, such as conjugate gradient method. However, the conventional conjugate gradient method takes a long time to complete data processing. Thus, a fast and effective iterative algorithm is necessary to improve the utilization of FTG data. Generally, inversion processing is formulated by incorporating regularizing constraints, followed by the introduction of a non-monotone gradient-descent method to accelerate the convergence rate of FTG data inversion. Compared with the conventional gradient method, the steepest descent gradient algorithm, and the conjugate gradient algorithm, there are clear advantages of the non-monotone iterative gradient-descent algorithm. Simulated and field FTG data were applied to show the application value of this new fast inversion method.

  8. A computationally efficient method for full-core conjugate heat transfer modeling of sodium fast reactors

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Rui, E-mail: rhu@anl.gov; Yu, Yiqi

    2016-11-15

    Highlights: • Developed a computationally efficient method for full-core conjugate heat transfer modeling of sodium fast reactors. • Applied fully-coupled JFNK solution scheme to avoid the operator-splitting errors. • The accuracy and efficiency of the method is confirmed with a 7-assembly test problem. • The effects of different spatial discretization schemes are investigated and compared to the RANS-based CFD simulations. - Abstract: For efficient and accurate temperature predictions of sodium fast reactor structures, a 3-D full-core conjugate heat transfer modeling capability is developed for an advanced system analysis tool, SAM. The hexagon lattice core is modeled with 1-D parallel channels representing the subassembly flow, and 2-D duct walls and inter-assembly gaps. The six sides of the hexagon duct wall and near-wall coolant region are modeled separately to account for different temperatures and heat transfer between coolant flow and each side of the duct wall. The Jacobian Free Newton Krylov (JFNK) solution method is applied to solve the fluid and solid field simultaneously in a fully coupled fashion. The 3-D full-core conjugate heat transfer modeling capability in SAM has been demonstrated by a verification test problem with 7 fuel assemblies in a hexagon lattice layout. Additionally, the SAM simulation results are compared with RANS-based CFD simulations. Very good agreements have been achieved between the results of the two approaches.

  9. One Curve Embedded Full-Bridge MMC Modeling Method with Detailed Representation of IGBT Characteristics

    Science.gov (United States)

    Hongyang, Yu; Zhengang, Lu; Xi, Yang

    2017-05-01

    Modular Multilevel Converter is more and more widely used in high voltage DC transmission system and high power motor drive system. It is a major topological structure for high power AC-DC converter. Due to the large module number, the complex control algorithm, and the high power user’s back ground, the MMC model used for simulation should be as accurate as possible to simulate the details of how MMC works for the dynamic testing of the MMC controller. But so far, there is no sample simulation MMC model which can simulate the switching dynamic process. In this paper, one curve embedded full-bridge MMC modeling method with detailed representation of IGBT characteristics is proposed. This method is based on the switching curve referring and sample circuit calculation, and it is sample for implementation. Based on the simulation comparison test under Matlab/Simulink, the proposed method is proved to be correct.

  10. Full-direct method for imaging pharmacokinetic parameters in dynamic fluorescence molecular tomography

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Guanglei, E-mail: guangleizhang@bjtu.edu.cn [Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084 (China); Department of Biomedical Engineering, School of Computer and Information Technology, Beijing Jiaotong University, Beijing 100044 (China); Pu, Huangsheng; Liu, Fei; Bai, Jing [Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084 (China); He, Wei [China Institute of Sport Science, Beijing 100061 (China); Luo, Jianwen, E-mail: luo-jianwen@tsinghua.edu.cn [Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing 100084 (China); Center for Biomedical Imaging Research, School of Medicine, Tsinghua University, Beijing 100084 (China)

    2015-02-23

    Images of pharmacokinetic parameters (also known as parametric images) in dynamic fluorescence molecular tomography (FMT) can provide three-dimensional metabolic information for biological studies and drug development. However, the ill-posed nature of FMT and the high temporal variation of fluorophore concentration together make it difficult to obtain accurate parametric images in small animals in vivo. In this letter, we present a method to directly reconstruct the parametric images from the boundary measurements based on hybrid FMT/X-ray computed tomography (XCT) system. This method can not only utilize structural priors obtained from the XCT system to mitigate the ill-posedness of FMT but also make full use of the temporal correlations of boundary measurements to model the high temporal variation of fluorophore concentration. The results of numerical simulation and mouse experiment demonstrate that the proposed method leads to significant improvements in the reconstruction quality of parametric images.

  11. Micro-seismic imaging using a source function independent full waveform inversion method

    Science.gov (United States)

    Wang, Hanchen; Alkhalifah, Tariq

    2018-03-01

    At the heart of micro-seismic event measurements is the task to estimate the location of the source micro-seismic events, as well as their ignition times. The accuracy of locating the sources is highly dependent on the velocity model. On the other hand, the conventional micro-seismic source locating methods require, in many cases manual picking of traveltime arrivals, which do not only lead to manual effort and human interaction, but also prone to errors. Using full waveform inversion (FWI) to locate and image micro-seismic events allows for an automatic process (free of picking) that utilizes the full wavefield. However, full waveform inversion of micro-seismic events faces incredible nonlinearity due to the unknown source locations (space) and functions (time). We developed a source function independent full waveform inversion of micro-seismic events to invert for the source image, source function and the velocity model. It is based on convolving reference traces with these observed and modeled to mitigate the effect of an unknown source ignition time. The adjoint-state method is used to derive the gradient for the source image, source function and velocity updates. The extended image for the source wavelet in Z axis is extracted to check the accuracy of the inverted source image and velocity model. Also, angle gathers is calculated to assess the quality of the long wavelength component of the velocity model. By inverting for the source image, source wavelet and the velocity model simultaneously, the proposed method produces good estimates of the source location, ignition time and the background velocity for synthetic examples used here, like those corresponding to the Marmousi model and the SEG/EAGE overthrust model.

  12. Micro-seismic imaging using a source function independent full waveform inversion method

    KAUST Repository

    Wang, Hanchen

    2018-03-26

    At the heart of micro-seismic event measurements is the task to estimate the location of the source micro-seismic events, as well as their ignition times. The accuracy of locating the sources is highly dependent on the velocity model. On the other hand, the conventional micro-seismic source locating methods require, in many cases manual picking of traveltime arrivals, which do not only lead to manual effort and human interaction, but also prone to errors. Using full waveform inversion (FWI) to locate and image micro-seismic events allows for an automatic process (free of picking) that utilizes the full wavefield. However, full waveform inversion of micro-seismic events faces incredible nonlinearity due to the unknown source locations (space) and functions (time). We developed a source function independent full waveform inversion of micro-seismic events to invert for the source image, source function and the velocity model. It is based on convolving reference traces with these observed and modeled to mitigate the effect of an unknown source ignition time. The adjoint-state method is used to derive the gradient for the source image, source function and velocity updates. The extended image for the source wavelet in Z axis is extracted to check the accuracy of the inverted source image and velocity model. Also, angle gathers is calculated to assess the quality of the long wavelength component of the velocity model. By inverting for the source image, source wavelet and the velocity model simultaneously, the proposed method produces good estimates of the source location, ignition time and the background velocity for synthetic examples used here, like those corresponding to the Marmousi model and the SEG/EAGE overthrust model.

  13. Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications.

    Science.gov (United States)

    Vazquez, Miguel; Krallinger, Martin; Leitner, Florian; Valencia, Alfonso

    2011-06-01

    Providing prior knowledge about biological properties of chemicals, such as kinetic values, protein targets, or toxic effects, can facilitate many aspects of drug development. Chemical information is rapidly accumulating in all sorts of free text documents like patents, industry reports, or scientific articles, which has motivated the development of specifically tailored text mining applications. Despite the potential gains, chemical text mining still faces significant challenges. One of the most salient is the recognition of chemical entities mentioned in text. To help practitioners contribute to this area, a good portion of this review is devoted to this issue, and presents the basic concepts and principles underlying the main strategies. The technical details are introduced and accompanied by relevant bibliographic references. Other tasks discussed are retrieving relevant articles, identifying relationships between chemicals and other entities, or determining the chemical structures of chemicals mentioned in text. This review also introduces a number of published applications that can be used to build pipelines in topics like drug side effects, toxicity, and protein-disease-compound network analysis. We conclude the review with an outlook on how we expect the field to evolve, discussing its possibilities and its current limitations. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  14. A Concealed Car Extraction Method Based on Full-Waveform LiDAR Data

    Directory of Open Access Journals (Sweden)

    Chuanrong Li

    2016-01-01

    Full Text Available Concealed cars extraction from point clouds data acquired by airborne laser scanning has gained its popularity in recent years. However, due to the occlusion effect, the number of laser points for concealed cars under trees is not enough. Thus, the concealed cars extraction is difficult and unreliable. In this paper, 3D point cloud segmentation and classification approach based on full-waveform LiDAR was presented. This approach first employed the autocorrelation G coefficient and the echo ratio to determine concealed cars areas. Then the points in the concealed cars areas were segmented with regard to elevation distribution of concealed cars. Based on the previous steps, a strategy integrating backscattered waveform features and the view histogram descriptor was developed to train sample data of concealed cars and generate the feature pattern. Finally concealed cars were classified by pattern matching. The approach was validated by full-waveform LiDAR data and experimental results demonstrated that the presented approach can extract concealed cars with accuracy more than 78.6% in the experiment areas.

  15. The hydrogen tunneling splitting in malonaldehyde: A full-dimensional time-independent quantum mechanical method

    Energy Technology Data Exchange (ETDEWEB)

    Wu, Feng; Ren, Yinghui; Bian, Wensheng, E-mail: bian@iccas.ac.cn [Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190 (China); University of Chinese Academy of Sciences, Beijing 100049 (China)

    2016-08-21

    The accurate time-independent quantum dynamics calculations on the ground-state tunneling splitting of malonaldehyde in full dimensionality are reported for the first time. This is achieved with an efficient method developed by us. In our method, the basis functions are customized for the hydrogen transfer process which has the effect of greatly reducing the size of the final Hamiltonian matrix, and the Lanczos method and parallel strategy are used to further overcome the memory and central processing unit time bottlenecks. The obtained ground-state tunneling splitting of 24.5 cm{sup −1} is in excellent agreement with the benchmark value of 23.8 cm{sup −1} computed with the full-dimensional, multi-configurational time-dependent Hartree approach on the same potential energy surface, and we estimate that our reported value has an uncertainty of less than 0.5 cm{sup −1}. Moreover, the role of various vibrational modes strongly coupled to the hydrogen transfer process is revealed.

  16. A deterministic alternative to the full configuration interaction quantum Monte Carlo method

    Energy Technology Data Exchange (ETDEWEB)

    Tubman, Norm M.; Lee, Joonho; Takeshita, Tyler Y.; Head-Gordon, Martin; Whaley, K. Birgitta [University of California, Berkeley, Berkeley, California 94720 (United States)

    2016-07-28

    Development of exponentially scaling methods has seen great progress in tackling larger systems than previously thought possible. One such technique, full configuration interaction quantum Monte Carlo, is a useful algorithm that allows exact diagonalization through stochastically sampling determinants. The method derives its utility from the information in the matrix elements of the Hamiltonian, along with a stochastic projected wave function, to find the important parts of Hilbert space. However, the stochastic representation of the wave function is not required to search Hilbert space efficiently, and here we describe a highly efficient deterministic method that can achieve chemical accuracy for a wide range of systems, including the difficult Cr{sub 2} molecule. We demonstrate for systems like Cr{sub 2} that such calculations can be performed in just a few cpu hours which makes it one of the most efficient and accurate methods that can attain chemical accuracy for strongly correlated systems. In addition our method also allows efficient calculation of excited state energies, which we illustrate with benchmark results for the excited states of C{sub 2}.

  17. Concept Map Technique as a New Method for Whole Text Translation

    Science.gov (United States)

    Krishan, Tamara Mohd Altabieri

    2017-01-01

    This study discusses the use of concept map tool as a new method for teaching translation (from English language to Arabic language). This study comprised 80 students divided into two groups. The first group was taught the new vocabulary by using the concept tool method, whereas the second group was taught the new vocabulary by the traditional…

  18. A Shellcode Detection Method Based on Full Native API Sequence and Support Vector Machine

    Science.gov (United States)

    Cheng, Yixuan; Fan, Wenqing; Huang, Wei; An, Jing

    2017-09-01

    Dynamic monitoring the behavior of a program is widely used to discriminate between benign program and malware. It is usually based on the dynamic characteristics of a program, such as API call sequence or API call frequency to judge. The key innovation of this paper is to consider the full Native API sequence and use the support vector machine to detect the shellcode. We also use the Markov chain to extract and digitize Native API sequence features. Our experimental results show that the method proposed in this paper has high accuracy and low detection rate.

  19. A new method for assessing the accuracy of full arch impressions in patients.

    Science.gov (United States)

    Kuhr, F; Schmidt, A; Rehmann, P; Wöstmann, B

    2016-12-01

    To evaluate a new method of measuring the real deviation (trueness) of full arch impressions intraorally and to investigate the trueness of digital full arch impressions in comparison to a conventional impression procedure in clinical use. Four metal spheres were fixed with composite using a metal application aid to the lower teeth of 50 test subjects as reference structures. One conventional impression (Impregum Penta Soft) with subsequent type-IV gypsum model casting (CI) and three different digital impressions were performed in the lower jaw of each test person with the following intraoral scanners: Sirona CEREC Omnicam (OC), 3M True Definition (TD), Heraeus Cara TRIOS (cT). The digital and conventional (gypsum) models were analyzed relative to the spheres. Linear distance and angle measurements between the spheres, as well as digital superimpositions of the spheres with the reference data set were executed. With regard to the distance measurements, CI showed the smallest deviations followed by intraoral scanners TD, cT and OC. A digital superimposition procedure yielded the same order for the outcomes: CI (15±4μm), TD (23±9μm), cT (37±14μm), OC (214±38μm). Angle measurements revealed the smallest deviation for TD (0.06°±0,07°) followed by CI (0.07°±0.07°), cT (0.13°±0.15°) and OC (0.28°±0.21°). The new measuring method is suitable for measuring the dimensional accuracy of full arch impressions intraorally. CI is still significantly more accurate than full arch scans with intraoral scanners in clinical use. Conventional full arch impressions with polyether impression materials are still more accurate than full arch digital impressions. Digital impression systems using powder application and active wavefront sampling technology achieve the most accurate results in comparison to other intraoral scanning systems (DRKS-ID: DRKS00009360, German Clinical Trials Register). Copyright © 2016 Elsevier Ltd. All rights reserved.

  20. A Text Matching Method to Facilitate the Validation of Frequent Order Sets Obtained Through Data Mining

    OpenAIRE

    Che, Chengjian; Rocha, Roberto A.

    2006-01-01

    In order to compare order sets discovered using a data mining algorithm with existing order sets, we developed an order matching tool based on Oracle Text. The tool includes both automated searching and manual review processes. The comparison between the automated process and the manual review process indicates that the sensitivity of the automated matching is 81% and the specificity is 84%.

  1. Text analysis of open-ended survey responses : a complementary method to preference mapping

    NARCIS (Netherlands)

    ten Kleij, F; Musters, PAD

    The present study illustrates the use of computer-aided text analysis to evaluate the content of open-ended survey responses. During an in-hall test, different varieties of mayonnaise were evaluated by 165 respondents on a 10-point liking scale, with the option to freely comment on these

  2. BrdsNBz: A Mixed Methods Study Exploring Adolescents' Use of a Sexual Health Text Message Service

    Science.gov (United States)

    Willoughby, Jessica Fitts

    2013-01-01

    Sexual health text message services are becoming increasingly popular, but little is known about who uses such services and why. This project details the implementation of a campaign promoting a state-wide sexual health text message service that allows teens to text directly with a health educator and uses a mixed method design to assess who uses…

  3. Full-waveform detection of non-impulsive seismic events based on time-reversal methods

    Science.gov (United States)

    Solano, Ericka Alinne; Hjörleifsdóttir, Vala; Liu, Qinya

    2017-12-01

    We present a full-waveform detection method for non-impulsive seismic events, based on time-reversal principles. We use the strain Green's tensor as a matched filter, correlating it with continuous observed seismograms, to detect non-impulsive seismic events. We show that this is mathematically equivalent to an adjoint method for detecting earthquakes. We define the detection function, a scalar valued function, which depends on the stacked correlations for a group of stations. Event detections are given by the times at which the amplitude of the detection function exceeds a given value relative to the noise level. The method can make use of the whole seismic waveform or any combination of time-windows with different filters. It is expected to have an advantage compared to traditional detection methods for events that do not produce energetic and impulsive P waves, for example glacial events, landslides, volcanic events and transform-fault earthquakes for events which velocity structure along the path is relatively well known. Furthermore, the method has advantages over empirical Greens functions template matching methods, as it does not depend on records from previously detected events, and therefore is not limited to events occurring in similar regions and with similar focal mechanisms as these events. The method is not specific to any particular way of calculating the synthetic seismograms, and therefore complicated structural models can be used. This is particularly beneficial for intermediate size events that are registered on regional networks, for which the effect of lateral structure on the waveforms can be significant. To demonstrate the feasibility of the method, we apply it to two different areas located along the mid-oceanic ridge system west of Mexico where non-impulsive events have been reported. The first study area is between Clipperton and Siqueiros transform faults (9°N), during the time of two earthquake swarms, occurring in March 2012 and May

  4. A study of active learning methods for named entity recognition in clinical text.

    Science.gov (United States)

    Chen, Yukun; Lasko, Thomas A; Mei, Qiaozhu; Denny, Joshua C; Xu, Hua

    2015-12-01

    Named entity recognition (NER), a sequential labeling task, is one of the fundamental tasks for building clinical natural language processing (NLP) systems. Machine learning (ML) based approaches can achieve good performance, but they often require large amounts of annotated samples, which are expensive to build due to the requirement of domain experts in annotation. Active learning (AL), a sample selection approach integrated with supervised ML, aims to minimize the annotation cost while maximizing the performance of ML-based models. In this study, our goal was to develop and evaluate both existing and new AL methods for a clinical NER task to identify concepts of medical problems, treatments, and lab tests from the clinical notes. Using the annotated NER corpus from the 2010 i2b2/VA NLP challenge that contained 349 clinical documents with 20,423 unique sentences, we simulated AL experiments using a number of existing and novel algorithms in three different categories including uncertainty-based, diversity-based, and baseline sampling strategies. They were compared with the passive learning that uses random sampling. Learning curves that plot performance of the NER model against the estimated annotation cost (based on number of sentences or words in the training set) were generated to evaluate different active learning and the passive learning methods and the area under the learning curve (ALC) score was computed. Based on the learning curves of F-measure vs. number of sentences, uncertainty sampling algorithms outperformed all other methods in ALC. Most diversity-based methods also performed better than random sampling in ALC. To achieve an F-measure of 0.80, the best method based on uncertainty sampling could save 66% annotations in sentences, as compared to random sampling. For the learning curves of F-measure vs. number of words, uncertainty sampling methods again outperformed all other methods in ALC. To achieve 0.80 in F-measure, in comparison to random

  5. Methods to assess youth engagement in a text messaging supplement to an effective teen pregnancy program.

    Science.gov (United States)

    Devine, Sharon; Leeds, Caroline; Shlay, Judith C; Leytem, Amber; Beum, Robert; Bull, Sheana

    2015-08-01

    Youth are prolific users of cell phone minutes and text messaging. Numerous programs using short message service text messaging (SMS) have been employed to help improve health behaviors and health outcomes. However, we lack information on whether and what type of interaction or engagement with SMS program content is required to realize any benefit. We explored youth engagement with an automated SMS program designed to supplement a 25-session youth development program with demonstrated efficacy for reductions in teen pregnancy. Using two years of program data, we report on youth participation in design of message content and response frequency to messages among youth enrolled in the intervention arm of a randomized controlled trial (RCT) as one indicator of engagement. There were 221 youth between the ages of 14-18 enrolled over two years in the intervention arm of the RCT. Just over half (51%) were female; 56% were Hispanic; and 27% African American. Youth were sent 40,006 messages of which 16,501 were considered bi-directional where youth were asked to text a response. Four-fifths (82%) responded at least once to a text. We found variations in response frequency by gender, age, and ethnicity. The most popular types of messages youth responded to include questions and quizzes. The first two months of the program in each year had the highest response frequency. An important next step is to assess whether higher response to SMS results in greater efficacy. This future work can facilitate greater attention to message design and content to ensure messages are engaging for the intended audience. Copyright © 2015 Elsevier Inc. All rights reserved.

  6. Microseismic imaging using a source-independent full-waveform inversion method

    KAUST Repository

    Wang, Hanchen

    2016-09-06

    Using full waveform inversion (FWI) to locate microseismic and image microseismic events allows for an automatic process (free of picking) that utilizes the full wavefield. However, waveform inversion of microseismic events faces incredible nonlinearity due to the unknown source location (space) and function (time). We develop a source independent FWI of microseismic events to invert for the source image, source function and the velocity model. It is based on convolving reference traces with the observed and modeled data to mitigate the effect of an unknown source ignition time. The adjoint-state method is used to derive the gradient for the source image, source function and velocity updates. The extended image for source wavelet in z axis is extracted to check the accuracy of the inverted source image and velocity model. Also the angle gather is calculated to see if the velocity model is correct. By inverting for all the source image, source wavelet and the velocity model, the proposed method produces good estimates of the source location, ignition time and the background velocity for part of the SEG overthrust model.

  7. Full-sky formulae for weak lensing power spectra from total angular momentum method

    International Nuclear Information System (INIS)

    Yamauchi, Daisuke; Taruya, Atsushi; Namikawa, Toshiya

    2013-01-01

    We systematically derive full-sky formulae for the weak lensing power spectra generated by scalar, vector and tensor perturbations from the total angular momentum (TAM) method. Based on both the geodesic and geodesic deviation equations, we first give the gauge-invariant expressions for the deflection angle and Jacobi map as observables of the CMB lensing and cosmic shear experiments. We then apply the TAM method, originally developed in the theoretical studies of CMB, to a systematic derivation of the angular power spectra. The TAM representation, which characterizes the total angular dependence of the spatial modes projected along a line-of-sight, can carry all the information of the lensing modes generated by scalar, vector, and tensor metric perturbations. This greatly simplifies the calculation, and we present a complete set of the full-sky formulae for angular power spectra in both the E-/B-mode cosmic shear and gradient-/curl-mode lensing potential of deflection angle. Based on the formulae, we give illustrative examples of non-vanishing B-mode cosmic shear and curl-mode of deflection angle in the presence of the vector and tensor perturbations, and explicitly compute the power spectra

  8. Microseismic imaging using a source-independent full-waveform inversion method

    KAUST Repository

    Wang, Hanchen

    2016-01-01

    Using full waveform inversion (FWI) to locate microseismic and image microseismic events allows for an automatic process (free of picking) that utilizes the full wavefield. However, waveform inversion of microseismic events faces incredible nonlinearity due to the unknown source location (space) and function (time). We develop a source independent FWI of microseismic events to invert for the source image, source function and the velocity model. It is based on convolving reference traces with the observed and modeled data to mitigate the effect of an unknown source ignition time. The adjoint-state method is used to derive the gradient for the source image, source function and velocity updates. The extended image for source wavelet in z axis is extracted to check the accuracy of the inverted source image and velocity model. Also the angle gather is calculated to see if the velocity model is correct. By inverting for all the source image, source wavelet and the velocity model, the proposed method produces good estimates of the source location, ignition time and the background velocity for part of the SEG overthrust model.

  9. Developing mobile phone text messages for tobacco risk communication among college students: a mixed methods study.

    Science.gov (United States)

    Prokhorov, Alexander V; Machado, Tamara C; Calabro, Karen S; Vanderwater, Elizabeth A; Vidrine, Damon J; Pasch, Keryn P; Marani, Salma K; Buchberg, Meredith; Wagh, Aditya; Russell, Sophia C; Czerniak, Katarzyna W; Botello, Gabrielle C; Dobbins, Mackenzie H; Khalil, Georges E; Perry, Cheryl L

    2017-01-31

    Engaging young adults for the purpose of communicating health risks associated with nicotine and tobacco use can be challenging since they comprise a population heavily targeted with appealing marketing by the evolving tobacco industry. The Food and Drug Administration seeks novel ways to effectively communicate risks to warn about using these products. This paper describes the first step in developing a text messaging program delivered by smartphones that manipulate three messaging characteristics (i.e., depth, framing, and appeal). Perceptions of community college students were described after previewing text messages designed to inform about risks of using conventional and new tobacco products. Thirty-one tobacco users and nonusers, aged 18-25 participated in five focus discussions held on two community college campuses. Attendees reviewed prototype messages and contributed feedback about text message structure and content. Qualitative data were coded and analyzed using NVivo Version 10. Most participants were female and two-thirds were ethnic minorities. A variety of conventional and new tobacco products in the past month were used by a third of participants. Three identified domains were derived from the qualitative data. These included perceived risks of using tobacco products, receptivity to message content, and logistical feedback regarding the future message campaign. Overall, participants found the messages to be interesting and appropriate. A gap in awareness of the risks of using new tobacco products was revealed. Feedback on the prototype messages was incorporated into message revisions. These findings provided preliminary confirmation that the forthcoming messaging program will be appealing to young adults.

  10. The norm and the text: Denzin and Lincoln's handbooks of qualitative method.

    Science.gov (United States)

    Fielding, N G

    1999-09-01

    Qualitative methods have lately enjoyed enhanced legitimacy and are increasingly used in academic and applied social research. Yet the field is marked by controversy about virtually every key tenet of qualitative inquiry, from matters of epistemology to purely practical matters of relations with research subjects. Not only is the practice of qualitative research hotly contested, consensus is lacking about the purpose of qualitative research and whether it has a distinctive role to play relative to other approaches to the study of social phenomena. Against this context, the handbooks of qualitative method edited by Norman Denzin and Yvonna Lincoln represent a significant attempt to capture the breadth of contemporary approaches to qualitative method. The article examines key contributions from the handbooks, drawing on these to develop a view of qualitative method from a pragmatic, realist perspective. Among the issues considered are the significance of relativism, subjectivity, post-modernism and feminist method, the politicization of the purposes of qualitative research, the debate over criteria of validity, and the move to treat qualitative research as an entertainment rather than a scientific practice.

  11. Bioinformatics Methods for Interpreting Toxicogenomics Data: The Role of Text-Mining

    NARCIS (Netherlands)

    Hettne, K.M.; Kleinjans, J.; Stierum, R.H.; Boorsma, A.; Kors, J.A.

    2014-01-01

    This chapter concerns the application of bioinformatics methods to the analysis of toxicogenomics data. The chapter starts with an introduction covering how bioinformatics has been applied in toxicogenomics data analysis, and continues with a description of the foundations of a specific

  12. Texting to increase physical activity among teenagers (TXT Me!): Rationale, design, and methods proposal

    Science.gov (United States)

    Physical activity decreases from childhood through adulthood. Among youth, teenagers (teens) achieve the lowest levels of physical activity, and high school age youth are particularly at risk of inactivity. Effective methods are needed to increase youth physical activity in a way that can be maintai...

  13. Application of the Hybrid Simulation Method for the Full-Scale Precast Reinforced Concrete Shear Wall Structure

    Directory of Open Access Journals (Sweden)

    Zaixian Chen

    2018-02-01

    Full Text Available The hybrid simulation (HS testing method combines physical test and numerical simulation, and provides a viable alternative to evaluate the structural seismic performance. Most studies focused on the accuracy, stability and reliability of the HS method in the small-scale tests. It is a challenge to evaluate the seismic performance of a twelve-story pre-cast reinforced concrete shear-wall structure using this HS method which takes the full-scale bottom three-story structural model as the physical substructure and the elastic non-linear model as the numerical substructure. This paper employs an equivalent force control (EFC method with implicit integration algorithm to deal with the numerical integration of the equation of motion (EOM and the control of the loading device. Because of the arrangement of the test model, an elastic non-linear numerical model is used to simulate the numerical substructure. And non-subdivision strategy for the displacement inflection point of numerical substructure is used to easily realize the simulation of the numerical substructure and thus reduce the measured error. The parameters of the EFC method are calculated basing on analytical and numerical studies and used to the actual full-scale HS test. Finally, the accuracy and feasibility of the EFC-based HS method is verified experimentally through the substructure HS tests of the pre-cast reinforced concrete shear-wall structure model. And the testing results of the descending stage can be conveniently obtained from the EFC-based HS method.

  14. Boring of full scale deposition holes using a novel dry blind boring method

    Energy Technology Data Exchange (ETDEWEB)

    Autio, J.; Kirkkomaeki, T. [Saanio and Riekkola Oy, Helsinki (Finland)

    1996-10-01

    Three holes the size of deposition holes (depth 7.5 m and diameter 1.5 m) were bored in the Research Tunnel at Olkiluoto, Finland. A novel full-face boring technique was used based on rotary crushing of rock and removal of crushed rock by vacuum flushing through the drill string. The purpose of the work was to demonstrate the feasibility of the technique. During the boring test procedures were carried out in order to determine the effect of changes in operating parameters on the performance of the boring machine and the quality of the hole. The boring method was found to be technically feasible and efficient. Evaluation of the quality of the hole included studies of the geometry of the hole, measurements of the surface roughness using a laser profilometer and study of excavation disturbances in the zone adjacent to the surface of the holes using two novel methods, He-gas diffusion and the {sup 14}C-polymethylmethacrylate methods. 43 refs.

  15. Full-Scale Turbofan Engine Noise-Source Separation Using a Four-Signal Method

    Science.gov (United States)

    Hultgren, Lennart S.; Arechiga, Rene O.

    2016-01-01

    Contributions from the combustor to the overall propulsion noise of civilian transport aircraft are starting to become important due to turbofan design trends and expected advances in mitigation of other noise sources. During on-ground, static-engine acoustic tests, combustor noise is generally sub-dominant to other engine noise sources because of the absence of in-flight effects. Consequently, noise-source separation techniques are needed to extract combustor-noise information from the total noise signature in order to further progress. A novel four-signal source-separation method is applied to data from a static, full-scale engine test and compared to previous methods. The new method is, in a sense, a combination of two- and three-signal techniques and represents an attempt to alleviate some of the weaknesses of each of those approaches. This work is supported by the NASA Advanced Air Vehicles Program, Advanced Air Transport Technology Project, Aircraft Noise Reduction Subproject and the NASA Glenn Faculty Fellowship Program.

  16. On the use of a penalized least squares method to process kinematic full-field measurements

    International Nuclear Information System (INIS)

    Moulart, Raphaël; Rotinat, René

    2014-01-01

    This work is aimed at exploring the performances of an alternative procedure to smooth and differentiate full-field displacement measurements. After recalling the strategies currently used by the experimental mechanics community, a short overview of the available smoothing algorithms is drawn up and the requirements that such an algorithm has to fulfil to be applicable to process kinematic measurements are listed. A comparative study of the chosen algorithm is performed including the 2D penalized least squares method and two other commonly implemented strategies. The results obtained by penalized least squares are comparable in terms of quality to those produced by the two other algorithms, while the penalized least squares method appears to be the fastest and the most flexible. Unlike both the other considered methods, it is possible with penalized least squares to automatically choose the parameter governing the amount of smoothing to apply. Unfortunately, it appears that this automation is not suitable for the proposed application since it does not lead to optimal strain maps. Finally, it is possible with this technique to perform the derivation to obtain strain maps before smoothing them (while the smoothing is normally applied to displacement maps before the differentiation), which can lead in some cases to a more effective reconstruction of the strain fields. (paper)

  17. [Hygienic Assesment of Educational Texts: Methodical Approaches and Evaluation of Difficulties for Children of Secondary Textbooks].

    Science.gov (United States)

    Kuchma, V R; Tkachuk, E A

    2015-01-01

    The understandability and readability of the text are significant indicators of evaluation of textbooks. The aim of the study - rationale of improving the readability and understandability of textbooks. 60 modern textbooks for 5-11th classes on History, Physics, Biology and 23 textbooks of 1960-1980's edition. Flesch index was used to assess the readability, Fogh index - to evaluate understandability. The readability and understandability of texts in textbooks of 1960-1980's and modern editions have no differences and show the same complexity of old and modern textbooks for students. The indicator of understandability of textbooks for primary classes corresponds to age norm and is 4.4±0.2 points. The indicator of readability for these books is less age norm and is 53.8±2.9 points, which increases the physiological cost of educational activities of children of primary school age. Children's readability and understandability of school textbooks are a significant factor of intensity of training activities and can be objectively assessed by Flesch and Fogh indices, that it is appropriate for an objective hygienic assessment of the tension of the educational activities for children. The main direction of optimization of the tension of educational activity is to reduce the intellectual and emotional loads in children by increasing the easiness of reading textbooks due to their compliance with the age peculiarities of students.

  18. A novel full-field experimental method to measure the local compressibility of gas diffusion media

    Energy Technology Data Exchange (ETDEWEB)

    Lai, Yeh-Hung; Li, Yongqiang [Electrochemical Energy Research Lab, GM R and D, Honeoye Falls, NY 14472 (United States); Rock, Jeffrey A. [GM Powertrain, Honeoye Falls, NY 14472 (United States)

    2010-05-15

    The gas diffusion medium (GDM) in a proton exchange membrane (PEM) fuel cell needs to simultaneously satisfy the requirements of transporting reactant gases, removing product water, conducting electrons and heat, and providing mechanical support to the membrane electrode assembly (MEA). Concerning the localized over-compression which may force carbon fibers and other conductive debris into the membrane to cause fuel cell failure by electronically shorting through the membrane, we have developed a novel full-field experimental method to measure the local thickness and compressibility of GDM. Applying a uniform air pressure upon a thin polyimide film bonded on the top surface of the GDM with support from the bottom by a flat metal substrate and measuring the thickness change using the 3-D digital image correlation technique with an out-of-plane displacement resolution less than 0.5 {mu}m, we have determined the local thickness and compressive stress/strain behavior in the GDM. Using the local thickness and compressibility data over an area of 11.2 mm x 11.2 mm, we numerically construct the nominal compressive response of a commercial Toray trademark TGP-H-060 based GDM subjected to compression by flat platens. Good agreement in the nominal stress/strain curves from the numerical construction and direct experimental flat-platen measurement confirms the validity of the methodology proposed in this article. The result shows that a nominal pressure of 1.4 MPa compressed between two flat platens can introduce localized compressive stress concentration of more than 3 MPa in up to 1% of the total area at various locations from several hundred micrometers to 1 mm in diameter. We believe that this full-field experimental method can be useful in GDM material and process development to reduce the local hard spots and help to mitigate the membrane shorting failure in PEM fuel cells. (author)

  19. A novel full-field experimental method to measure the local compressibility of gas diffusion media

    Science.gov (United States)

    Lai, Yeh-Hung; Li, Yongqiang; Rock, Jeffrey A.

    The gas diffusion medium (GDM) in a proton exchange membrane (PEM) fuel cell needs to simultaneously satisfy the requirements of transporting reactant gases, removing product water, conducting electrons and heat, and providing mechanical support to the membrane electrode assembly (MEA). Concerning the localized over-compression which may force carbon fibers and other conductive debris into the membrane to cause fuel cell failure by electronically shorting through the membrane, we have developed a novel full-field experimental method to measure the local thickness and compressibility of GDM. Applying a uniform air pressure upon a thin polyimide film bonded on the top surface of the GDM with support from the bottom by a flat metal substrate and measuring the thickness change using the 3-D digital image correlation technique with an out-of-plane displacement resolution less than 0.5 μm, we have determined the local thickness and compressive stress/strain behavior in the GDM. Using the local thickness and compressibility data over an area of 11.2 mm × 11.2 mm, we numerically construct the nominal compressive response of a commercial Toray™ TGP-H-060 based GDM subjected to compression by flat platens. Good agreement in the nominal stress/strain curves from the numerical construction and direct experimental flat-platen measurement confirms the validity of the methodology proposed in this article. The result shows that a nominal pressure of 1.4 MPa compressed between two flat platens can introduce localized compressive stress concentration of more than 3 MPa in up to 1% of the total area at various locations from several hundred micrometers to 1 mm in diameter. We believe that this full-field experimental method can be useful in GDM material and process development to reduce the local hard spots and help to mitigate the membrane shorting failure in PEM fuel cells.

  20. Full-band quantum simulation of electron devices with the pseudopotential method: Theory, implementation, and applications

    Science.gov (United States)

    Pala, M. G.; Esseni, D.

    2018-03-01

    This paper presents the theory, implementation, and application of a quantum transport modeling approach based on the nonequilibrium Green's function formalism and a full-band empirical pseudopotential Hamiltonian. We here propose to employ a hybrid real-space/plane-wave basis that results in a significant reduction of the computational complexity compared to a full plane-wave basis. To this purpose, we provide a theoretical formulation in the hybrid basis of the quantum confinement, the self-energies of the leads, and the coupling between the device and the leads. After discussing the theory and the implementation of the new simulation methodology, we report results for complete, self-consistent simulations of different electron devices, including a silicon Esaki diode, a thin-body silicon field effect transistor (FET), and a germanium tunnel FET. The simulated transistors have technologically relevant geometrical features with a semiconductor film thickness of about 4 nm and a channel length ranging from 10 to 17 nm. We believe that the newly proposed formalism may find applications also in transport models based on ab initio Hamiltonians, as those employed in density functional theory methods.

  1. Full wave simulation of waves in ECRIS plasmas based on the finite element method

    Energy Technology Data Exchange (ETDEWEB)

    Torrisi, G. [INFN - Laboratori Nazionali del Sud, via S. Sofia 62, 95123, Catania, Italy and Università Mediterranea di Reggio Calabria, Dipartimento di Ingegneria dell' Informazione, delle Infrastrutture e dell' Energia Sostenibile (DIIES), Via Graziella, I (Italy); Mascali, D.; Neri, L.; Castro, G.; Patti, G.; Celona, L.; Gammino, S.; Ciavola, G. [INFN - Laboratori Nazionali del Sud, via S. Sofia 62, 95123, Catania (Italy); Di Donato, L. [Università degli Studi di Catania, Dipartimento di Ingegneria Elettrica Elettronica ed Informatica (DIEEI), Viale Andrea Doria 6, 95125 Catania (Italy); Sorbello, G. [INFN - Laboratori Nazionali del Sud, via S. Sofia 62, 95123, Catania, Italy and Università degli Studi di Catania, Dipartimento di Ingegneria Elettrica Elettronica ed Informatica (DIEEI), Viale Andrea Doria 6, 95125 Catania (Italy); Isernia, T. [Università Mediterranea di Reggio Calabria, Dipartimento di Ingegneria dell' Informazione, delle Infrastrutture e dell' Energia Sostenibile (DIIES), Via Graziella, I-89100 Reggio Calabria (Italy)

    2014-02-12

    This paper describes the modeling and the full wave numerical simulation of electromagnetic waves propagation and absorption in an anisotropic magnetized plasma filling the resonant cavity of an electron cyclotron resonance ion source (ECRIS). The model assumes inhomogeneous, dispersive and tensorial constitutive relations. Maxwell's equations are solved by the finite element method (FEM), using the COMSOL Multiphysics{sup ®} suite. All the relevant details have been considered in the model, including the non uniform external magnetostatic field used for plasma confinement, the local electron density profile resulting in the full-3D non uniform magnetized plasma complex dielectric tensor. The more accurate plasma simulations clearly show the importance of cavity effect on wave propagation and the effects of a resonant surface. These studies are the pillars for an improved ECRIS plasma modeling, that is mandatory to optimize the ion source output (beam intensity distribution and charge state, especially). Any new project concerning the advanced ECRIS design will take benefit by an adequate modeling of self-consistent wave absorption simulations.

  2. Deterministic alternatives to the full configuration interaction quantum Monte Carlo method for strongly correlated systems

    Science.gov (United States)

    Tubman, Norm; Whaley, Birgitta

    The development of exponential scaling methods has seen great progress in tackling larger systems than previously thought possible. One such technique, full configuration interaction quantum Monte Carlo, allows exact diagonalization through stochastically sampling of determinants. The method derives its utility from the information in the matrix elements of the Hamiltonian, together with a stochastic projected wave function, which are used to explore the important parts of Hilbert space. However, a stochastic representation of the wave function is not required to search Hilbert space efficiently and new deterministic approaches have recently been shown to efficiently find the important parts of determinant space. We shall discuss the technique of Adaptive Sampling Configuration Interaction (ASCI) and the related heat-bath Configuration Interaction approach for ground state and excited state simulations. We will present several applications for strongly correlated Hamiltonians. This work was supported through the Scientific Discovery through Advanced Computing (SciDAC) program funded by the U.S. Department of Energy, Office of Science, Advanced Scientific Computing Research and Basic Energy Sciences.

  3. Unsupervised method for automatic construction of a disease dictionary from a large free text collection.

    Science.gov (United States)

    Xu, Rong; Supekar, Kaustubh; Morgan, Alex; Das, Amar; Garber, Alan

    2008-11-06

    Concept specific lexicons (e.g. diseases, drugs, anatomy) are a critical source of background knowledge for many medical language-processing systems. However, the rapid pace of biomedical research and the lack of constraints on usage ensure that such dictionaries are incomplete. Focusing on disease terminology, we have developed an automated, unsupervised, iterative pattern learning approach for constructing a comprehensive medical dictionary of disease terms from randomized clinical trial (RCT) abstracts, and we compared different ranking methods for automatically extracting con-textual patterns and concept terms. When used to identify disease concepts from 100 randomly chosen, manually annotated clinical abstracts, our disease dictionary shows significant performance improvement (F1 increased by 35-88%) over available, manually created disease terminologies.

  4. Full waveform seismic AVAZ signatures of anisotropic shales by integrated rock physics and the reflectivity method

    Science.gov (United States)

    Liu, Xiwu; Guo, Zhiqi; Han, Xu

    2018-06-01

    A set of parallel vertical fractures embedded in a vertically transverse isotropy (VTI) background leads to orthorhombic anisotropy and corresponding azimuthal seismic responses. We conducted seismic modeling of full waveform amplitude variations versus azimuth (AVAZ) responses of anisotropic shale by integrating a rock physics model and a reflectivity method. The results indicate that the azimuthal variation of P-wave velocity tends to be more complicated for orthorhombic medium compared to the horizontally transverse isotropy (HTI) case, especially at high polar angles. Correspondingly, for the HTI layer in the theoretical model, the short axis of the azimuthal PP amplitudes at the top interface is parallel to the fracture strike, while the long axis at the bottom reflection directs the fracture strike. In contrast, the orthorhombic layer in the theoretical model shows distinct AVAZ responses in terms of PP reflections. Nevertheless, the azimuthal signatures of the R- and T-components of the mode-converted PS reflections show similar AVAZ features for the HTI and orthorhombic layers, which may imply that the PS responses are dominated by fractures. For the application to real data, a seismic-well tie based on upscaled data and a reflectivity method illustrate good agreement between the reference layers and the corresponding reflected events. Finally, the full waveform seismic AVAZ responses of the Longmaxi shale formation are computed for the cases of HTI and orthorhombic anisotropy for comparison. For the two cases, the azimuthal features represent differences mainly in amplitudes, while slightly in the phases of the reflected waveforms. Azimuth variations in the PP reflections from the reference layers show distinct behaviors for the HTI and orthorhombic cases, while the mode-converted PS reflections in terms of the R- and T-components show little differences in azimuthal features. It may suggest that the behaviors of the PS waves are dominated by vertically

  5. Comparison of tissue equalization, and premium view post-processing methods in full field digital mammography

    Energy Technology Data Exchange (ETDEWEB)

    Chen Baoying, E-mail: chenby128@yahoo.co [Department of Radiology, Tangdu Hospital, Fourth Military Medical University, Xinsi Road 1, 710038 Xi' an, Shaanxi (China); Wang Wei; Huang Jin; Zhao Ming; Cui Guangbin [Department of Radiology, Tangdu Hospital, Fourth Military Medical University, Xinsi Road 1, 710038 Xi' an, Shaanxi (China); Xu Jing [Cell Engineering Research Centre and Department of Cell Biology, State Key Laboratory of Cancer Biology, Fourth Military Medical University, Changle West Road 169, 710032 Xi' an, Shaanxi (China); Guo Wei; Du Pang; Li Pei [Department of Radiology, Tangdu Hospital, Fourth Military Medical University, Xinsi Road 1, 710038 Xi' an, Shaanxi (China); Yu Jun, E-mail: pclamper@163.co [Department of Preclinical Experiment Center, Fourth Military Medical University, Changle West Road 169, 710032 Xi' an, Shaanxi (China)

    2010-10-15

    Objective: To retrospectively evaluate the diagnostic abilities of 2 post-processing methods provided by GE Senographe DS system, tissue equalization (TE) and premium view (PV) in full field digital mammography (FFDM). Materials and methods: In accordance with the ethical standards of the World Medical Association, this study was approved by regional ethics committee and signed informed patient consents were obtained. We retrospectively reviewed digital mammograms from 101 women (mean age, 47 years; range, 23-81 years) in the modes of TE and PV, respectively. Three radiologists, fully blinded to the post-processing methods, all patient clinical information and histologic results, read images by using objective image interpretation criteria for diagnostic information end points such as lesion border delineation, definition of disease extent, visualization of internal and surrounding morphologic features of the lesions. Also, overall diagnostic impression in terms of lesion conspicuity, detectability and diagnostic confidence was assessed. Between-group comparisons were performed with Wilcoxon signed rank test. Results: Readers 1, 2, and 3 demonstrated significant overall better impression of PV in 29, 27, and 24 patients, compared with that for TE in 12, 13, and 11 patients, respectively (p < 0.05). Significant (p < 0.05) better impression of PV was also demonstrated for diagnostic information end points. Importantly, PV proved to be more sensitive than TE while detecting malignant lesions in dense breast rather than benign lesions and malignancy in non-dense breast (p < 0.01). Conclusion: PV compared with TE provides marked better diagnostic information in FFDM, particularly for patients with malignancy in dense breast.

  6. Comparison of tissue equalization, and premium view post-processing methods in full field digital mammography

    International Nuclear Information System (INIS)

    Chen Baoying; Wang Wei; Huang Jin; Zhao Ming; Cui Guangbin; Xu Jing; Guo Wei; Du Pang; Li Pei; Yu Jun

    2010-01-01

    Objective: To retrospectively evaluate the diagnostic abilities of 2 post-processing methods provided by GE Senographe DS system, tissue equalization (TE) and premium view (PV) in full field digital mammography (FFDM). Materials and methods: In accordance with the ethical standards of the World Medical Association, this study was approved by regional ethics committee and signed informed patient consents were obtained. We retrospectively reviewed digital mammograms from 101 women (mean age, 47 years; range, 23-81 years) in the modes of TE and PV, respectively. Three radiologists, fully blinded to the post-processing methods, all patient clinical information and histologic results, read images by using objective image interpretation criteria for diagnostic information end points such as lesion border delineation, definition of disease extent, visualization of internal and surrounding morphologic features of the lesions. Also, overall diagnostic impression in terms of lesion conspicuity, detectability and diagnostic confidence was assessed. Between-group comparisons were performed with Wilcoxon signed rank test. Results: Readers 1, 2, and 3 demonstrated significant overall better impression of PV in 29, 27, and 24 patients, compared with that for TE in 12, 13, and 11 patients, respectively (p < 0.05). Significant (p < 0.05) better impression of PV was also demonstrated for diagnostic information end points. Importantly, PV proved to be more sensitive than TE while detecting malignant lesions in dense breast rather than benign lesions and malignancy in non-dense breast (p < 0.01). Conclusion: PV compared with TE provides marked better diagnostic information in FFDM, particularly for patients with malignancy in dense breast.

  7. Full-Color LCD Microdisplay System Based on OLED Backlight Unit and Field-Sequential Color Driving Method

    Directory of Open Access Journals (Sweden)

    Sungho Woo

    2011-01-01

    Full Text Available We developed a single-panel LCD microdisplay system using a field-sequential color (FSC driving method and an organic light-emitting diode (OLED as a backlight unit (BLU. The 0.76′′ OLED BLU with red, green, and blue (RGB colors was fabricated by a conventional UV photolithography patterning process and by vacuum deposition of small molecule organic layers. The field-sequential driving frequency was set to 255 Hz to allow each of the RGB colors to be generated without color mixing at the given display frame rate. A prototype FSC LCD microdisplay system consisting of a 0.7′′ LCD microdisplay panel and the 0.76′′ OLED BLU successfully exhibited color display and moving picture images using the FSC driving method.

  8. Recognition of Time Stamps on Full-Disk Hα Images Using Machine Learning Methods

    Science.gov (United States)

    Xu, Y.; Huang, N.; Jing, J.; Liu, C.; Wang, H.; Fu, G.

    2016-12-01

    Observation and understanding of the physics of the 11-year solar activity cycle and 22-year magnetic cycle are among the most important research topics in solar physics. The solar cycle is responsible for magnetic field and particle fluctuation in the near-earth environment that have been found increasingly important in affecting the living of human beings in the modern era. A systematic study of large-scale solar activities, as made possible by our rich data archive, will further help us to understand the global-scale magnetic fields that are closely related to solar cycles. The long-time-span data archive includes both full-disk and high-resolution Hα images. Prior to the widely use of CCD cameras in 1990s, 35-mm films were the major media to store images. The research group at NJIT recently finished the digitization of film data obtained by the National Solar Observatory (NSO) and Big Bear Solar Observatory (BBSO) covering the period of 1953 to 2000. The total volume of data exceeds 60 TB. To make this huge database scientific valuable, some processing and calibration are required. One of the most important steps is to read the time stamps on all of the 14 million images, which is almost impossible to be done manually. We implemented three different methods to recognize the time stamps automatically, including Optical Character Recognition (OCR), Classification Tree and TensorFlow. The latter two are known as machine learning algorithms which are very popular now a day in pattern recognition area. We will present some sample images and the results of clock recognition from all three methods.

  9. Standardisation of {sup 18}F by a coincidence method using full solid angle detectors

    Energy Technology Data Exchange (ETDEWEB)

    Nedjadi, Youcef, E-mail: youcef.nedjadi@chuv.c [Institut de Radiophysique Appliquee, Grand Pre 1, 1007 Lausanne (Switzerland); Bailat, Claude; Caffari, Yvan; Bochud, Francois [Institut de Radiophysique Appliquee, Grand Pre 1, 1007 Lausanne (Switzerland)

    2010-07-15

    A solution of {sup 18}F was standardised with a 4{pi}{beta}-4{pi}{gamma} coincidence counting system in which the beta detector is a one-inch diameter cylindrical UPS89 plastic scintillator, positioned at the bottom of a well-type 5''x5'' NaI(Tl) gamma-ray detector. Almost full detection efficiency-which was varied downwards electronically-was achieved in the beta-channel. Aliquots of this {sup 18}F solution were also measured using 4{pi}{gamma} NaI(Tl) integral counting and Monte Carlo calculated efficiencies as well as the CIEMAT-NIST method. Secondary measurements of the same solution were also performed with an IG11 ionisation chamber whose equivalent activity is traceable to the Systeme International de Reference through the contribution IRA-METAS made to it in 2001; IRA's degree of equivalence was found to be close to the key comparison reference value (KCRV). The {sup 18}F activity predicted by this coincidence system agrees closely with the ionisation chamber measurement and is compatible within one standard deviation of the other primary measurements. This work demonstrates that our new coincidence system can standardise short-lived radionuclides used in nuclear medicine.

  10. A Joint Method of Envelope Inversion Combined with Hybrid-domain Full Waveform Inversion

    Science.gov (United States)

    CUI, C.; Hou, W.

    2017-12-01

    Full waveform inversion (FWI) aims to construct high-precision subsurface models by fully using the information in seismic records, including amplitude, travel time, phase and so on. However, high non-linearity and the absence of low frequency information in seismic data lead to the well-known cycle skipping problem and make inversion easily fall into local minima. In addition, those 3D inversion methods that are based on acoustic approximation ignore the elastic effects in real seismic field, and make inversion harder. As a result, the accuracy of final inversion results highly relies on the quality of initial model. In order to improve stability and quality of inversion results, multi-scale inversion that reconstructs subsurface model from low to high frequency are applied. But, the absence of very low frequencies (time domain and inversion in the frequency domain. To accelerate the inversion, we adopt CPU/GPU heterogeneous computing techniques. There were two levels of parallelism. In the first level, the inversion tasks are decomposed and assigned to each computation node by shot number. In the second level, GPU multithreaded programming is used for the computation tasks in each node, including forward modeling, envelope extraction, DFT (discrete Fourier transform) calculation and gradients calculation. Numerical tests demonstrated that the combined envelope inversion + hybrid-domain FWI could obtain much faithful and accurate result than conventional hybrid-domain FWI. The CPU/GPU heterogeneous parallel computation could improve the performance speed.

  11. Full Seismic Waveform Tomography of the Japan region using Adjoint Methods

    Science.gov (United States)

    Steptoe, Hamish; Fichtner, Andreas; Rickers, Florian; Trampert, Jeannot

    2013-04-01

    We present a full-waveform tomographic model of the Japan region based on spectral-element wave propagation, adjoint techniques and seismic data from dense station networks. This model is intended to further our understanding of both the complex regional tectonics and the finite rupture processes of large earthquakes. The shallow Earth structure of the Japan region has been the subject of considerable tomographic investigation. The islands of Japan exist in an area of significant plate complexity: subduction related to the Pacific and Philippine Sea plates is responsible for the majority of seismicity and volcanism of Japan, whilst smaller micro-plates in the region, including the Okhotsk, and Okinawa and Amur, part of the larger North America and Eurasia plates respectively, contribute significant local intricacy. In response to the need to monitor and understand the motion of these plates and their associated faults, numerous seismograph networks have been established, including the 768 station high-sensitivity Hi-net network, 84 station broadband F-net and the strong-motion seismograph networks K-net and KiK-net in Japan. We also include the 55 station BATS network of Taiwan. We use this exceptional coverage to construct a high-resolution model of the Japan region from the full-waveform inversion of over 15,000 individual component seismograms from 53 events that occurred between 1997 and 2012. We model these data using spectral-element simulations of seismic wave propagation at a regional scale over an area from 120°-150°E and 20°-50°N to a depth of around 500 km. We quantify differences between observed and synthetic waveforms using time-frequency misfits allowing us to separate both phase and amplitude measurements whilst exploiting the complete waveform at periods of 15-60 seconds. Fréchet kernels for these misfits are calculated via the adjoint method and subsequently used in an iterative non-linear conjugate-gradient optimization. Finally, we employ

  12. Simulation in full-scale mock-ups: an ergonomics evaluation method?

    DEFF Research Database (Denmark)

    Andersen, Simone Nyholm; Broberg, Ole

    2014-01-01

    This paper presents and exploratory study of four simulation sessions in full-scale mock-ups of future hospital facilities.......This paper presents and exploratory study of four simulation sessions in full-scale mock-ups of future hospital facilities....

  13. Fully automatic and reference-marker-free image stitching method for full-spine and full-leg imaging with computed radiography

    Science.gov (United States)

    Wang, Xiaohui; Foos, David H.; Doran, James; Rogers, Michael K.

    2004-05-01

    Full-leg and full-spine imaging with standard computed radiography (CR) systems requires several cassettes/storage phosphor screens to be placed in a staggered arrangement and exposed simultaneously to achieve an increased imaging area. A method has been developed that can automatically and accurately stitch the acquired sub-images without relying on any external reference markers. It can detect and correct the order, orientation, and overlap arrangement of the subimages for stitching. The automatic determination of the order, orientation, and overlap arrangement of the sub-images consists of (1) constructing a hypothesis list that includes all cassette/screen arrangements, (2) refining hypotheses based on a set of rules derived from imaging physics, (3) correlating each consecutive sub-image pair in each hypothesis and establishing an overall figure-of-merit, (4) selecting the hypothesis of maximum figure-of-merit. The stitching process requires the CR reader to over scan each CR screen so that the screen edges are completely visible in the acquired sub-images. The rotational displacement and vertical displacement between two consecutive sub-images are calculated by matching the orientation and location of the screen edge in the front image and its corresponding shadow in the back image. The horizontal displacement is estimated by maximizing the correlation function between the two image sections in the overlap region. Accordingly, the two images are stitched together. This process is repeated for the newly stitched composite image and the next consecutive sub-image until a full-image composite is created. The method has been evaluated in both phantom experiments and clinical studies. The standard deviation of image misregistration is below one image pixel.

  14. Full-Wave Analysis of Traveling-Wave Field-Effect Transistors Using Finite-Difference Time-Domain Method

    Directory of Open Access Journals (Sweden)

    Koichi Narahara

    2012-01-01

    Full Text Available Nonlinear transmission lines, which define transmission lines periodically loaded with nonlinear devices such as varactors, diodes, and transistors, are modeled in the framework of finite-difference time-domain (FDTD method. Originally, some root-finding routine is needed to evaluate the contributions of nonlinear device currents appropriately to the temporally advanced electrical fields. Arbitrary nonlinear transmission lines contain large amount of nonlinear devices; therefore, it costs too much time to complete calculations. To reduce the calculation time, we recently developed a simple model of diodes to eliminate root-finding routines in an FDTD solver. Approximating the diode current-voltage relation by a piecewise-linear function, an extended Ampere's law is solved in a closed form for the time-advanced electrical fields. In this paper, we newly develop an FDTD model of field-effect transistors (FETs, together with several numerical examples that demonstrate pulse-shortening phenomena in a traveling-wave FET.

  15. Full waveform inversion using oriented time-domain imaging method for vertical transverse isotropic media

    KAUST Repository

    Zhang, Zhendong; Alkhalifah, Tariq Ali

    2017-01-01

    Full waveform inversion for reection events is limited by its linearized update re-quirements given by a process equivalent to migration. Unless the background velocity model is reasonably accurate, the resulting gradient can have an inaccurate

  16. Monitoring temperature reactivity coefficient by noise method in a NPP at full power

    International Nuclear Information System (INIS)

    Aguilar, O.; Por, G.

    1987-04-01

    A new method based on noise measurement was used to estimate the temperature reactivity coefficient of the PAKS-2 reactor during the entire fuel cycle. Based on the measurements it is possible to measure the dependence of reactivity coefficient on boron concentration. Good agreement was found between the results obtained by the new method and by the conventional ones. Based on this method a new equipment can be develop which assures permanent measurements during operation. (author)

  17. A Mixed-Methods Study on the Impact of Socratic Seminars on Eighth Grade Students' Comprehension of Science Texts

    Science.gov (United States)

    Roncke, Nancy

    This formative, convergent-mixed methods research study investigated the impact of Socratic Seminars on eighth grade science students' independent comprehension of science texts. The study also highlighted how eighth grade students of varying reading abilities interacted with and comprehended science texts differently during and after the use of Socratic Seminars. In order to document any changes in the students' overall comprehension of science texts, this study compared the experimental and control groups' pre- and post-test performances on the Content Area Reading Assessment (Leslie & Caldwell, 2014) and self-perception surveys on students' scientific reading engagement. Student think-alouds and interviews also captured the students' evolving understandings of the science texts. At the conclusion of this sixteen-week study, the achievement gap between the experimental and control group was closed in five of the seven categories on the Content Area Reading Assessment, including supporting an inference with textual evidence, determining central ideas, explaining why or how, determining word meaning, and summarizing a science text. Students' self-perception surveys were more positive regarding reading science texts after the Socratic Seminars. Finally, the student think-alouds revealed that some students moved from a literal interpretation of the science texts to inquiries that questioned the text and world events.

  18. A convergent numerical method for the full Navier-Stokes-Fourier system in smooth physical domains

    Czech Academy of Sciences Publication Activity Database

    Feireisl, Eduard; Hošek, Radim; Michálek, Martin

    2016-01-01

    Roč. 54, č. 5 (2016), s. 3062-3082 ISSN 0036-1429 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : Navier-Stokes- Fourier system * finite element method * finite volume method Subject RIV: BA - General Mathematics Impact factor: 1.978, year: 2016 http://epubs.siam.org/doi/abs/10.1137/15M1011809

  19. A convergent numerical method for the full Navier-Stokes-Fourier system in smooth physical domains

    Czech Academy of Sciences Publication Activity Database

    Feireisl, Eduard; Hošek, Radim; Michálek, Martin

    2016-01-01

    Roč. 54, č. 5 (2016), s. 3062-3082 ISSN 0036-1429 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : Navier-Stokes-Fourier system * finite element method * finite volume method Subject RIV: BA - General Mathematics Impact factor: 1.978, year: 2016 http://epubs.siam.org/doi/abs/10.1137/15M1011809

  20. A new smoothing modified three-term conjugate gradient method for [Formula: see text]-norm minimization problem.

    Science.gov (United States)

    Du, Shouqiang; Chen, Miao

    2018-01-01

    We consider a kind of nonsmooth optimization problems with [Formula: see text]-norm minimization, which has many applications in compressed sensing, signal reconstruction, and the related engineering problems. Using smoothing approximate techniques, this kind of nonsmooth optimization problem can be transformed into a general unconstrained optimization problem, which can be solved by the proposed smoothing modified three-term conjugate gradient method. The smoothing modified three-term conjugate gradient method is based on Polak-Ribière-Polyak conjugate gradient method. For the Polak-Ribière-Polyak conjugate gradient method has good numerical properties, the proposed method possesses the sufficient descent property without any line searches, and it is also proved to be globally convergent. Finally, the numerical experiments show the efficiency of the proposed method.

  1. The theoretical study of full spectrum analysis method for airborne gamma-ray spectrometric data

    International Nuclear Information System (INIS)

    Ni Weichong

    2011-01-01

    Spectra of airborne gamma-ray spectrometry was found to be the synthesis of spectral components of radioelement sources by analyzing the constitution of radioactive sources for airborne gamma-ray spectrometric survey and establishing the models of gamma-ray measurement. The mathematical equation for analysising airborne gamma-ray full spectrometric data can be expressed into matrix and related expansions were developed for the mineral resources exploration, environmental radiation measurement, nuclear emergency monitoring, and so on. Theoretical study showed that the atmospheric radon could be directly computed by airborne gamma-ray spectrometric data with full spectrum analysis without the use of the accessional upward-looking detectors. (authors)

  2. The experimental method of measurement for spatial distribution of full aperture backscatter light by circular PIN-array

    International Nuclear Information System (INIS)

    Zhao Xuefeng; Wang Chuanke; Hu Feng; Kuang Longyu; Wang Zhebin; Li Sanwei; Liu Shengye; Jiang Gang

    2011-01-01

    The spatial distribution of backscatter light is very important for understanding the production of backscatter light. The experimental method of spatial distribution of full aperture backscatter light is based on the circular PIN array composed of concentric orbicular multi-PIN detectors. The image of backscatter light spatial distribution of full aperture SBS is obtained by measuring spatial distribution of full aperture backscatter light using the method in the experiment of laser hohlraum targets interaction at 'Shenguang II'. A preliminary method to measure spatial distribution of full aperture backscatter light is established. (authors)

  3. Modal loss mechanism of micro-structured VCSELs studied using full vector FDTD method.

    Science.gov (United States)

    Jo, Du-Ho; Vu, Ngoc Hai; Kim, Jin-Tae; Hwang, In-Kag

    2011-09-12

    Modal properties of vertical cavity surface-emitting lasers (VCSELs) with holey structures are studied using a finite difference time domain (FDTD) method. We investigate loss behavior with respect to the variation of structural parameters, and explain the loss mechanism of VCSELs. We also propose an effective method to estimate the modal loss based on mode profiles obtained using FDTD simulation. Our results could provide an important guideline for optimization of the microstructures of high-power single-mode VCSELs.

  4. A simple method to calculate the neutron flow through full ducts

    International Nuclear Information System (INIS)

    Faik Ouahab, Z.; Jehouani, A.; Ghassoun, J.; Senhou, N.; Groetz, J.E.

    2010-01-01

    Summary of a study of assessment of the probability for neutrons to be guided in a full duct with a square cross section and doubly bent. Two software have been developed, based on the Monte Carlo simulation, to compute the neutron transmission probability at the end of the duct. Results are in good agreement with that obtained with the MCNP-5 code. The neutron flow and probability at the duct end have been determined for different materials and different duct dimensions

  5. A simple method for the parallel deep sequencing of full influenza A genomes

    DEFF Research Database (Denmark)

    Kampmann, Marie-Louise; Fordyce, Sarah Louise; Avila Arcos, Maria del Carmen

    2011-01-01

    Given the major threat of influenza A to human and animal health, and its ability to evolve rapidly through mutation and reassortment, tools that enable its timely characterization are necessary to help monitor its evolution and spread. For this purpose, deep sequencing can be a very valuable tool....... This study reports a comprehensive method that enables deep sequencing of the complete genomes of influenza A subtypes using the Illumina Genome Analyzer IIx (GAIIx). By using this method, the complete genomes of nine viruses were sequenced in parallel, representing the 2009 pandemic H1N1 virus, H5N1 virus...

  6. Measurement of the top quark mass with the template method in the [Formula: see text] channel using ATLAS data.

    Science.gov (United States)

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Riu, I; Rivoltella, G; Rizatdinova, F; Rizvi, E; Robertson, S H; Robichaud-Veronneau, A; Robinson, D; Robinson, J E M; Robinson, M; Robson, A; Rocha de Lima, J G; Roda, C; Roda Dos Santos, D; Rodriguez, D; Roe, A; Roe, S; Røhne, O; Rojo, V; Rolli, S; Romaniouk, A; Romano, M; Romanov, V M; Romeo, G; Romero Adam, E; Roos, L; Ros, E; Rosati, S; Rosbach, K; Rose, A; Rose, M; Rosenbaum, G A; Rosenberg, E I; Rosendahl, P L; Rosenthal, O; Rosselet, L; Rossetti, V; Rossi, E; Rossi, L P; Rotaru, M; Roth, I; Rothberg, J; Rousseau, D; Royon, C R; Rozanov, A; Rozen, Y; Ruan, X; Rubinskiy, I; Ruckert, B; Ruckstuhl, N; Rud, V I; Rudolph, C; Rudolph, G; Rühr, F; Ruggieri, F; Ruiz-Martinez, A; Rumiantsev, V; Rumyantsev, L; Runge, K; Rurikova, Z; Rusakovich, N A; Rust, D R; Rutherfoord, J P; Ruwiedel, C; Ruzicka, P; Ryabov, Y F; Ryadovikov, V; Ryan, P; Rybar, M; Rybkin, G; Ryder, N C; Rzaeva, S; Saavedra, A F; Sadeh, I; Sadrozinski, H F-W; Sadykov, R; Safai Tehrani, F; Sakamoto, H; Salamanna, G; Salamon, A; Saleem, M; Salihagic, D; Salnikov, A; Salt, J; Salvachua Ferrando, B M; Salvatore, D; Salvatore, F; Salvucci, A; Salzburger, A; Sampsonidis, D; Samset, B H; Sanchez, A; Sanchez Martinez, V; Sandaker, H; Sander, H G; Sanders, M P; Sandhoff, M; Sandoval, T; Sandoval, C; Sandstroem, R; Sandvoss, S; Sankey, D P C; Sansoni, A; Santamarina Rios, C; Santoni, C; Santonico, R; Santos, H; Saraiva, J G; Sarangi, T; Sarkisyan-Grinbaum, E; Sarri, F; Sartisohn, G; Sasaki, O; Sasao, N; Satsounkevitch, I; Sauvage, G; Sauvan, E; Sauvan, J B; Savard, P; Savinov, V; Savu, D O; Sawyer, L; Saxon, D H; Says, L P; Sbarra, C; Sbrizzi, A; Scallon, O; Scannicchio, D A; Scarcella, M; Schaarschmidt, J; Schacht, P; Schäfer, U; Schaepe, S; Schaetzel, S; Schaffer, A C; Schaile, D; Schamberger, R D; Schamov, A G; Scharf, V; Schegelsky, V A; Scheirich, D; Schernau, M; Scherzer, M I; Schiavi, C; Schieck, J; Schioppa, M; Schlenker, S; Schlereth, J L; Schmidt, E; Schmieden, K; Schmitt, C; Schmitt, S; Schmitz, M; Schöning, A; Schott, M; Schouten, D; Schovancova, J; Schram, M; Schroeder, C; Schroer, N; Schuh, S; Schuler, G; Schultens, M J; Schultes, J; Schultz-Coulon, H-C; Schulz, H; Schumacher, J W; Schumacher, M; Schumm, B A; Schune, Ph; Schwanenberger, C; Schwartzman, A; Schwemling, Ph; Schwienhorst, R; Schwierz, R; Schwindling, J; Schwindt, T; Schwoerer, M; Scott, W G; Searcy, J; Sedov, G; Sedykh, E; Segura, E; Seidel, S C; Seiden, A; Seifert, F; Seixas, J M; Sekhniaidze, G; Selbach, K E; Seliverstov, D M; Sellden, B; Sellers, G; Seman, M; Semprini-Cesari, N; Serfon, C; Serin, L; Serkin, L; Seuster, R; Severini, H; Sevior, M E; Sfyrla, A; Shabalina, E; Shamim, M; Shan, L Y; Shank, J T; Shao, Q T; Shapiro, M; Shatalov, P B; Shaver, L; Shaw, K; Sherman, D; Sherwood, P; Shibata, A; Shichi, H; Shimizu, S; Shimojima, M; Shin, T; Shiyakova, M; Shmeleva, A; Shochet, M J; Short, D; Shrestha, S; Shulga, E; Shupe, M A; Sicho, P; Sidoti, A; Siegert, F; Sijacki, Dj; Silbert, O; Silva, J; Silver, Y; Silverstein, D; Silverstein, S B; Simak, V; Simard, O; Simic, Lj; Simion, S; Simmons, B; Simonyan, M; Sinervo, P; Sinev, N B; Sipica, V; Siragusa, G; Sircar, A; Sisakyan, A N; Sivoklokov, S Yu; Sjölin, J; Sjursen, T B; Skinnari, L A; Skottowe, H P; Skovpen, K; Skubic, P; Skvorodnev, N; Slater, M; Slavicek, T; Sliwa, K; Sloper, J; Smakhtin, V; Smirnov, S Yu; Smirnov, Y; Smirnova, L N; Smirnova, O; Smith, B C; Smith, D; Smith, K M; Smizanska, M; Smolek, K; Snesarev, A A; Snow, S W; Snow, J; Snuverink, J; Snyder, S; Soares, M; Sobie, R; Sodomka, J; Soffer, A; Solans, C A; Solar, M; Solc, J; Soldatov, E; Soldevila, U; Solfaroli Camillocci, E; Solodkov, A A; Solovyanov, O V; Soni, N; Sopko, V; Sopko, B; Sosebee, M; Soualah, R; Soukharev, A; Spagnolo, S; Spanò, F; Spighi, R; Spigo, G; Spila, F; Spiwoks, R; Spousta, M; Spreitzer, T; Spurlock, B; St Denis, R D; Stahlman, J; Stamen, R; Stanecka, E; Stanek, R W; Stanescu, C; Stapnes, S; Starchenko, E A; Stark, J; Staroba, P; Starovoitov, P; Staude, A; Stavina, P; Stavropoulos, G; Steele, G; Steinbach, P; Steinberg, P; Stekl, I; Stelzer, B; Stelzer, H J; Stelzer-Chilton, O; Stenzel, H; Stern, S; Stevenson, K; Stewart, G A; Stillings, J A; Stockton, M C; Stoerig, K; Stoicea, G; Stonjek, S; Strachota, P; Stradling, A R; Straessner, A; Strandberg, J; Strandberg, S; Strandlie, A; Strang, M; Strauss, E; Strauss, M; Strizenec, P; Ströhmer, R; Strom, D M; Strong, J A; Stroynowski, R; Strube, J; Stugu, B; Stumer, I; Stupak, J; Sturm, P; Styles, N A; Soh, D A; Su, D; Subramania, Hs; Succurro, A; Sugaya, Y; Sugimoto, T; Suhr, C; Suita, K; Suk, M; Sulin, V V; Sultansoy, S; Sumida, T; Sun, X; Sundermann, J E; Suruliz, K; Sushkov, S; Susinno, G; Sutton, M R; Suzuki, Y; Suzuki, Y; Svatos, M; Sviridov, Yu M; Swedish, S; Sykora, I; Sykora, T; Szeless, B; Sánchez, J; Ta, D; Tackmann, K; Taffard, A; Tafirout, R; Taiblum, N; Takahashi, Y; Takai, H; Takashima, R; Takeda, H; Takeshita, T; Takubo, Y; Talby, M; Talyshev, A; Tamsett, M C; Tanaka, J; Tanaka, R; Tanaka, S; Tanaka, S; Tanaka, Y; Tanasijczuk, A J; Tani, K; Tannoury, N; Tappern, G P; Tapprogge, S; Tardif, D; Tarem, S; Tarrade, F; Tartarelli, G F; Tas, P; Tasevsky, M; Tassi, E; Tatarkhanov, M; Tayalati, Y; Taylor, C; Taylor, F E; Taylor, G N; Taylor, W; Teinturier, M; Teixeira Dias Castanheira, M; Teixeira-Dias, P; Temming, K K; Ten Kate, H; Teng, P K; Terada, S; Terashi, K; Terron, J; Testa, M; Teuscher, R J; Thadome, J; Therhaag, J; Theveneaux-Pelzer, T; Thioye, M; Thoma, S; Thomas, J P; Thompson, E N; Thompson, P D; Thompson, P D; Thompson, A S; Thomson, E; Thomson, M; Thun, R P; Tian, F; Tibbetts, M J; Tic, T; Tikhomirov, V O; Tikhonov, Y A; Timoshenko, S; Tipton, P; Tique Aires Viegas, F J; Tisserant, S; Toczek, B; Todorov, T; Todorova-Nova, S; Toggerson, B; Tojo, J; Tokár, S; Tokunaga, K; Tokushuku, K; Tollefson, K; Tomoto, M; Tompkins, L; Toms, K; Tong, G; Tonoyan, A; Topfel, C; Topilin, N D; Torchiani, I; Torrence, E; Torres, H; Torró Pastor, E; Toth, J; Touchard, F; Tovey, D R; Trefzger, T; Tremblet, L; Tricoli, A; Trigger, I M; Trincaz-Duvoid, S; Trinh, T N; Tripiana, M F; Trischuk, W; Trivedi, A; Trocmé, B; Troncon, C; Trottier-McDonald, M; Trzebinski, M; Trzupek, A; Tsarouchas, C; Tseng, J C-L; Tsiakiris, M; Tsiareshka, P V; Tsionou, D; Tsipolitis, G; Tsiskaridze, V; Tskhadadze, E G; Tsukerman, I I; Tsulaia, V; Tsung, J-W; Tsuno, S; Tsybychev, D; Tua, A; Tudorache, A; Tudorache, V; Tuggle, J M; Turala, M; Turecek, D; Turk Cakir, I; Turlay, E; Turra, R; Tuts, P M; Tykhonov, A; Tylmad, M; Tyndel, M; Tzanakos, G; Uchida, K; Ueda, I; Ueno, R; Ugland, M; Uhlenbrock, M; Uhrmacher, M; Ukegawa, F; Unal, G; Underwood, D G; Undrus, A; Unel, G; Unno, Y; Urbaniec, D; Usai, G; Uslenghi, M; Vacavant, L; Vacek, V; Vachon, B; Vahsen, S; Valenta, J; Valente, P; Valentinetti, S; Valkar, S; Valladolid Gallego, E; Vallecorsa, S; Valls Ferrer, J A; van der Graaf, H; van der Kraaij, E; Van Der Leeuw, R; van der Poel, E; van der Ster, D; van Eldik, N; van Gemmeren, P; van Kesteren, Z; van Vulpen, I; Vanadia, M; Vandelli, W; Vandoni, G; Vaniachine, A; Vankov, P; Vannucci, F; Varela Rodriguez, F; Vari, R; Varnes, E W; Varouchas, D; Vartapetian, A; Varvell, K E; Vassilakopoulos, V I; Vazeille, F; Vegni, G; Veillet, J J; Vellidis, C; Veloso, F; Veness, R; Veneziano, S; Ventura, A; Ventura, D; Venturi, M; Venturi, N; Vercesi, V; Verducci, M; Verkerke, W; Vermeulen, J C; Vest, A; Vetterli, M C; Vichou, I; Vickey, T; Vickey Boeriu, O E; Viehhauser, G H A; Viel, S; Villa, M; Villaplana Perez, M; Vilucchi, E; Vincter, M G; Vinek, E; Vinogradov, V B; Virchaux, M; Virzi, J; Vitells, O; Viti, M; Vivarelli, I; Vives Vaque, F; Vlachos, S; Vladoiu, D; Vlasak, M; Vlasov, N; Vogel, A; Vokac, P; Volpi, G; Volpi, M; Volpini, G; von der Schmitt, H; von Loeben, J; von Radziewski, H; von Toerne, E; Vorobel, V; Vorobiev, A P; Vorwerk, V; Vos, M; Voss, R; Voss, T T; Vossebeld, J H; Vranjes, N; Vranjes Milosavljevic, M; Vrba, V; Vreeswijk, M; Vu Anh, T; Vuillermet, R; Vukotic, I; Wagner, W; Wagner, P; Wahlen, H; Wakabayashi, J; Walbersloh, J; Walch, S; Walder, J; Walker, R; Walkowiak, W; Wall, R; Waller, P; Wang, C; Wang, H; Wang, H; Wang, J; Wang, J; Wang, J C; Wang, R; Wang, S M; Warburton, A; Ward, C P; Warsinsky, M; Watkins, P M; Watson, A T; Watson, I J; Watson, M F; Watts, G; Watts, S; Waugh, A T; Waugh, B M; Weber, M; Weber, M S; Weber, P; Weidberg, A R; Weigell, P; Weingarten, J; Weiser, C; Wellenstein, H; Wells, P S; Wen, M; Wenaus, T; Wendler, S; Weng, Z; Wengler, T; Wenig, S; Wermes, N; Werner, M; Werner, P; Werth, M; Wessels, M; Weydert, C; Whalen, K; Wheeler-Ellis, S J; Whitaker, S P; White, A; White, M J; Whitehead, S R; Whiteson, D; Whittington, D; Wicek, F; Wicke, D; Wickens, F J; Wiedenmann, W; Wielers, M; Wienemann, P; Wiglesworth, C; Wiik-Fuchs, L A M; Wijeratne, P A; Wildauer, A; Wildt, M A; Wilhelm, I; Wilkens, H G; Will, J Z; Williams, E; Williams, H H; Willis, W; Willocq, S; Wilson, J A; Wilson, M G; Wilson, A; Wingerter-Seez, I; Winkelmann, S; Winklmeier, F; Wittgen, M; Wolter, M W; Wolters, H; Wong, W C; Wooden, G; Wosiek, B K; Wotschack, J; Woudstra, M J; Wozniak, K W; Wraight, K; Wright, C; Wright, M; Wrona, B; Wu, S L; Wu, X; Wu, Y; Wulf, E; Wunstorf, R; Wynne, B M; Xella, S; Xiao, M; Xie, S; Xie, Y; Xu, C; Xu, D; Xu, G; Yabsley, B; Yacoob, S; Yamada, M; Yamaguchi, H; Yamamoto, A; Yamamoto, K; Yamamoto, S; Yamamura, T; Yamanaka, T; Yamaoka, J; Yamazaki, T; Yamazaki, Y; Yan, Z; Yang, H; Yang, U K; Yang, Y; Yang, Y; Yang, Z; Yanush, S; Yao, Y; Yasu, Y; Ybeles Smit, G V; Ye, J; Ye, S; Yilmaz, M; Yoosoofmiya, R; Yorita, K; Yoshida, R; Young, C; Youssef, S; Yu, D; Yu, J; Yu, J; Yuan, L; Yurkewicz, A; Zabinski, B; Zaets, V G; Zaidan, R; Zaitsev, A M; Zajacova, Z; Zanello, L; Zarzhitsky, P; Zaytsev, A; Zeitnitz, C; Zeller, M; Zeman, M; Zemla, A; Zendler, C; Zenin, O; Ženiš, T; Zinonos, Z; Zenz, S; Zerwas, D; Zevi Della Porta, G; Zhan, Z; Zhang, D; Zhang, H; Zhang, J; Zhang, X; Zhang, Z; Zhao, L; Zhao, T; Zhao, Z; Zhemchugov, A; Zheng, S; Zhong, J; Zhou, B; Zhou, N; Zhou, Y; Zhu, C G; Zhu, H; Zhu, J; Zhu, Y; Zhuang, X; Zhuravlov, V; Zieminska, D; Zimmermann, R; Zimmermann, S; Zimmermann, S; Ziolkowski, M; Zitoun, R; Živković, L; Zmouchko, V V; Zobernig, G; Zoccoli, A; Zolnierowski, Y; Zsenei, A; Zur Nedden, M; Zutshi, V; Zwalinski, L

    The top quark mass has been measured using the template method in the [Formula: see text] channel based on data recorded in 2011 with the ATLAS detector at the LHC. The data were taken at a proton-proton centre-of-mass energy of [Formula: see text] and correspond to an integrated luminosity of 1.04 fb -1 . The analyses in the e +jets and μ +jets decay channels yield consistent results. The top quark mass is measured to be m top =174.5±0.6 stat ±2.3 syst GeV.

  7. Implementation of a fast running full core pin power reconstruction method in DYN3D

    International Nuclear Information System (INIS)

    Gomez-Torres, Armando Miguel; Sanchez-Espinoza, Victor Hugo; Kliem, Sören; Gommlich, Andre

    2014-01-01

    Highlights: • New pin power reconstruction (PPR) method for the nodal diffusion code DYN3D. • Flexible PPR method applicable to a single, a group or to all fuel assemblies (square, hex). • Combination of nodal with pin-wise solutions (non-conform geometry). • PPR capabilities shown for REA of a Minicore (REA) PWR whole core. - Abstract: This paper presents a substantial extension of the pin power reconstruction (PPR) method used in the reactor dynamics code DYN3D with the aim to better describe the heterogeneity within the fuel assembly during reactor simulations. The flexibility of the new implemented PPR permits the local spatial refinement of one fuel assembly, of a cluster of fuel assemblies, of a quarter or eight of a core or even of a whole core. The application of PPR in core regions of interest will pave the way for the coupling with sub-channel codes enabling the prediction of local safety parameters. One of the main advantages of considering regions and not only a hot fuel assembly (FA) is the fact that the cross flow within this region can be taken into account by the subchannel code. The implementation of the new PPR method has been tested analysing a rod ejection accident (REA) in a PWR minicore consisting of 3 × 3 FA. Finally, the new capabilities of DNY3D are demonstrated by the analysing a boron dilution transient in a PWR MOX core and the pin power of a VVER-1000 reactor at stationary conditions

  8. Implementation of a fast running full core pin power reconstruction method in DYN3D

    Energy Technology Data Exchange (ETDEWEB)

    Gomez-Torres, Armando Miguel [Instituto Nacional de Investigaciones Nucleares, Department of Nuclear Systems, Carretera Mexico – Toluca s/n, La Marquesa, 52750 Ocoyoacac (Mexico); Sanchez-Espinoza, Victor Hugo, E-mail: victor.sanchez@kit.edu [Karlsruhe Institute of Technology, Institute for Neutron Physics and Reactor Technology, Hermann-vom-Helmhotz-Platz 1, D-76344 Eggenstein-Leopoldshafen (Germany); Kliem, Sören; Gommlich, Andre [Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstraße 400, 01328 Dresden (Germany)

    2014-07-01

    Highlights: • New pin power reconstruction (PPR) method for the nodal diffusion code DYN3D. • Flexible PPR method applicable to a single, a group or to all fuel assemblies (square, hex). • Combination of nodal with pin-wise solutions (non-conform geometry). • PPR capabilities shown for REA of a Minicore (REA) PWR whole core. - Abstract: This paper presents a substantial extension of the pin power reconstruction (PPR) method used in the reactor dynamics code DYN3D with the aim to better describe the heterogeneity within the fuel assembly during reactor simulations. The flexibility of the new implemented PPR permits the local spatial refinement of one fuel assembly, of a cluster of fuel assemblies, of a quarter or eight of a core or even of a whole core. The application of PPR in core regions of interest will pave the way for the coupling with sub-channel codes enabling the prediction of local safety parameters. One of the main advantages of considering regions and not only a hot fuel assembly (FA) is the fact that the cross flow within this region can be taken into account by the subchannel code. The implementation of the new PPR method has been tested analysing a rod ejection accident (REA) in a PWR minicore consisting of 3 × 3 FA. Finally, the new capabilities of DNY3D are demonstrated by the analysing a boron dilution transient in a PWR MOX core and the pin power of a VVER-1000 reactor at stationary conditions.

  9. Boring of full scale deposition holes using a novel dry blind boring method

    International Nuclear Information System (INIS)

    Autio, J.; Kirkkomaeki, T.

    1996-11-01

    As a part of the Finnish radioactive waste disposal research three holes (the size of deposition holes) were bored in the research tunnel at Olkiluoto in Finland. A novel full-face boring technique was used based on rotary crushing of rock and removal of crushed rock by vacuum flushing through the drill string an the purpose of the work was to demonstrate the feasibility of the technique. During the boring test procedures were carried out in order to determine the effect of charges in operating parameters on the performance of the boring machine and the quality of the hole. (refs.)

  10. Boring of full scale deposition holes using a novel dry blind boring method

    Energy Technology Data Exchange (ETDEWEB)

    Autio, J.; Kirkkomaeki, T. [Saanio and Riekkola Consulting Engineers, Helsinki (Finland)

    1996-11-01

    As a part of the Finnish radioactive waste disposal research three holes (the size of deposition holes) were bored in the research tunnel at Olkiluoto in Finland. A novel full-face boring technique was used based on rotary crushing of rock and removal of crushed rock by vacuum flushing through the drill string an the purpose of the work was to demonstrate the feasibility of the technique. During the boring test procedures were carried out in order to determine the effect of charges in operating parameters on the performance of the boring machine and the quality of the hole. (refs.).

  11. Application of probabilistic methods for sizing of safety factors in studies on defect harm fullness

    International Nuclear Information System (INIS)

    Ardillon, E.; Pitner, P.

    1996-01-01

    The design rules that are currently under application in nuclear engineering recommend the use of deterministic analysis methods. Probabilistic methods allow the uncertainties inherent in input variables of the analytical model to be taken into account owing to data provided by operation feedback so as to better evaluate the link between the deterministic margins adopted and the actual risk level. In the Resistance R/Loading L elementary case where the variables are Gaussian, there is an explicit relation between the required safety level and the partial safety coefficients which affect each variable. In the complex case of a flawed pipe subjected to various modes of ruin where many random variables are not Gaussian, one can obtain implicit relations. These relations allow a certain flexibility when choosing the coefficients, which poses the problem of their optimum calibration. The choice of coefficients based upon the coordinates of the ''most probable failure point'' illustrates this approach. (authors). 7 refs., 5 figs., 2 tabs

  12. Elastic full waveform inversion based on the homogenization method: theoretical framework and 2-D numerical illustrations

    Science.gov (United States)

    Capdeville, Yann; Métivier, Ludovic

    2018-05-01

    Seismic imaging is an efficient tool to investigate the Earth interior. Many of the different imaging techniques currently used, including the so-called full waveform inversion (FWI), are based on limited frequency band data. Such data are not sensitive to the true earth model, but to a smooth version of it. This smooth version can be related to the true model by the homogenization technique. Homogenization for wave propagation in deterministic media with no scale separation, such as geological media, has been recently developed. With such an asymptotic theory, it is possible to compute an effective medium valid for a given frequency band such that effective waveforms and true waveforms are the same up to a controlled error. In this work we make the link between limited frequency band inversion, mainly FWI, and homogenization. We establish the relation between a true model and an FWI result model. This relation is important for a proper interpretation of FWI images. We numerically illustrate, in the 2-D case, that an FWI result is at best the homogenized version of the true model. Moreover, it appears that the homogenized FWI model is quite independent of the FWI parametrization, as long as it has enough degrees of freedom. In particular, inverting for the full elastic tensor is, in each of our tests, always a good choice. We show how the homogenization can help to understand FWI behaviour and help to improve its robustness and convergence by efficiently constraining the solution space of the inverse problem.

  13. An AC Resistance Optimization Method Applicable for Inductor and Transformer Windings with Full Layers and Partial Layers

    DEFF Research Database (Denmark)

    Shen, Zhan; Li, Zhiguang; Jin, Long

    2017-01-01

    This paper proposes an ac resistance optimization method applicable for both inductor and transformer windings with full layers and partial layers. The proposed method treats the number of layers of the windings as a design variable instead of as a predefined parameter, compared to existing methods...

  14. Assessment of uncertainty in full core reactor physics calculations using statistical methods

    International Nuclear Information System (INIS)

    McEwan, C.

    2012-01-01

    The best estimate method of safety analysis involves choosing a realistic set of input parameters for a proposed safety case and evaluating the uncertainty in the results. Determining the uncertainty in code outputs remains a challenge and is the subject of a benchmarking exercise proposed by the Organization for Economic Cooperation and Development. The work proposed in this paper will contribute to this benchmark by assessing the uncertainty in a depletion calculation of the final nuclide concentrations for an experiment performed in the Fukushima-2 reactor. This will be done using lattice transport code DRAGON and a tool known as DINOSAUR. (author)

  15. Assessment of uncertainty in full core reactor physics calculations using statistical methods

    Energy Technology Data Exchange (ETDEWEB)

    McEwan, C., E-mail: mcewac2@mcmaster.ca [McMaster Univ., Hamilton, Ontario (Canada)

    2012-07-01

    The best estimate method of safety analysis involves choosing a realistic set of input parameters for a proposed safety case and evaluating the uncertainty in the results. Determining the uncertainty in code outputs remains a challenge and is the subject of a benchmarking exercise proposed by the Organization for Economic Cooperation and Development. The work proposed in this paper will contribute to this benchmark by assessing the uncertainty in a depletion calculation of the final nuclide concentrations for an experiment performed in the Fukushima-2 reactor. This will be done using lattice transport code DRAGON and a tool known as DINOSAUR. (author)

  16. Full-Scale Passive Earth Entry Vehicle Landing Tests: Methods and Measurements

    Science.gov (United States)

    Littell, Justin D.; Kellas, Sotiris

    2018-01-01

    During the summer of 2016, a series of drop tests were conducted on two passive earth entry vehicle (EEV) test articles at the Utah Test and Training Range (UTTR). The tests were conducted to evaluate the structural integrity of a realistic EEV vehicle under anticipated landing loads. The test vehicles were lifted to an altitude of approximately 400m via a helicopter and released via release hook into a predesignated 61 m landing zone. Onboard accelerometers were capable of measuring vehicle free flight and impact loads. High-speed cameras on the ground tracked the free-falling vehicles and data was used to calculate critical impact parameters during the final seconds of flight. Additional sets of high definition and ultra-high definition cameras were able to supplement the high-speed data by capturing the release and free flight of the test articles. Three tests were successfully completed and showed that the passive vehicle design was able to withstand the impact loads from nominal and off-nominal impacts at landing velocities of approximately 29 m/s. Two out of three test resulted in off-nominal impacts due to a combination of high winds at altitude and the method used to suspend the vehicle from the helicopter. Both the video and acceleration data captured is examined and discussed. Finally, recommendations for improved release and instrumentation methods are presented.

  17. Effect of MELT method on thoracolumbar connective tissue: The full study.

    Science.gov (United States)

    Sanjana, Faria; Chaudhry, Hans; Findley, Thomas

    2017-01-01

    Altered connective tissue structure has been identified in adults with chronic low back pain (LBP). A self-care treatment for managing LBP is the MELT method. The MELT method is a hands-off, self-treatment that is said to alleviate chronic pain, release tension and restore mobility, utilizing specialized soft treatments balls, soft body roller and techniques mimicking manual therapy. The objective of this study was to determine whether thickness of thoracolumbar connective tissue and biomechanical and viscoelastic properties of myofascial tissue in the low back region change in subjects with chronic LBP as a result of MELT. This study was designed using a quasi experimental pre-post- design that analyzed data from subjects who performed MELT. Using ultrasound imaging and an algorithm developed in MATLAB, thickness of thoracolumbar connective tissue was analyzed in 22 subjects. A hand-held digital palpation device, called the MyotonPRO, was used to assess biomechanical properties such as stiffness, elasticity, tone and mechanical stress relaxation time of the thoracolumbar myofascial tissue. A forward bending test assessing flexibility and pain scale was added to see if MELT affected subjects with chronic LBP. A significant decrease in connective tissue thickness and pain was observed in participants. Significant increase in flexibility was also recorded. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. BrdsNBz: A mixed methods study exploring adolescents' use of a sexual health text message service

    Science.gov (United States)

    Willoughby, Jessica Fitts

    Sexual health text message services are becoming increasingly popular, but little is known about who uses such services and why. This project details the implementation of a campaign promoting a state-wide sexual health text message service that allows teens to text directly with a health educator and uses a mixed method design to assess who uses the service, what motivates use, and potential barriers to using the service. A theory of information seeking through text messaging is posited based on previous information seeking and communication theory and tested with adolescents. A social marketing campaign was created promoting a North Carolina sexual health text message service and conducted in six middle and high schools in the North Carolina Piedmont region in Fall 2012. More than 2000 students in four schools completed online questionnaires that assessed awareness of the service, perceptions, and use. Focus groups and in depth interviews were then conducted with middle and high school students. Results indicate teens who are sexually active and in relationships are more likely to use the service. A teens' level of uncertainty about sexual health influences affect, which in turn leads adolescents to assess various information options. Positive attitudes toward the service and credibility perceptions are direct predictors of intentions to use. Efficacy was found to be an indirect predictor, working through credibility perceptions to influence intentions to use. Although teens may have an interest in using the service, there are barriers associated with use. Survey findings and qualitative results indicate that teens are interested in using a sexual health text message service, but perceived costs, fear of parents finding out about service use, and a lack of understanding of how to use the service were barriers for some teens. This study has implications for sexual health text message services, especially those that allow teens to connect directly with a health

  19. Kalman and particle filtering methods for full vehicle and tyre identification

    Science.gov (United States)

    Bogdanski, Karol; Best, Matthew C.

    2018-05-01

    This paper considers identification of all significant vehicle handling dynamics of a test vehicle, including identification of a combined-slip tyre model, using only those sensors currently available on most vehicle controller area network buses. Using an appropriately simple but efficient model structure, all of the independent parameters are found from test vehicle data, with the resulting model accuracy demonstrated on independent validation data. The paper extends previous work on augmented Kalman Filter state estimators to concentrate wholly on parameter identification. It also serves as a review of three alternative filtering methods; identifying forms of the unscented Kalman filter, extended Kalman filter and particle filter are proposed and compared for effectiveness, complexity and computational efficiency. All three filters are suited to applications of system identification and the Kalman Filters can also operate in real-time in on-line model predictive controllers or estimators.

  20. The optimized gradient method for full waveform inversion and its spectral implementation

    KAUST Repository

    Wu, Zedong; Alkhalifah, Tariq Ali

    2016-01-01

    At the heart of the full waveform inversion (FWI) implementation is wavefield extrapolation, and specifically its accuracy and cost. To obtain accurate, dispersion free wavefields, the extrapolation for modelling is often expensive. Combining an efficient extrapolation with a novel gradient preconditioning can render an FWI implementation that efficiently converges to an accurate model. We, specifically, recast the extrapolation part of the inversion in terms of its spectral components for both data and gradient calculation. This admits dispersion free wavefields even at large extrapolation time steps, which improves the efficiency of the inversion. An alternative spectral representation of the depth axis in terms of sine functions allows us to impose a free surface boundary condition, which reflects our medium boundaries more accurately. Using a newly derived perfectly matched layer formulation for this spectral implementation, we can define a finite model with absorbing boundaries. In order to reduce the nonlinearity in FWI, we propose a multiscale conditioning of the objective function through combining the different directional components of the gradient to optimally update the velocity. Through solving a simple optimization problem, it specifically admits the smoothest approximate update while guaranteeing its ascending direction. An application to the Marmousi model demonstrates the capability of the proposed approach and justifies our assertions with respect to cost and convergence.

  1. The optimized gradient method for full waveform inversion and its spectral implementation

    KAUST Repository

    Wu, Zedong

    2016-03-28

    At the heart of the full waveform inversion (FWI) implementation is wavefield extrapolation, and specifically its accuracy and cost. To obtain accurate, dispersion free wavefields, the extrapolation for modelling is often expensive. Combining an efficient extrapolation with a novel gradient preconditioning can render an FWI implementation that efficiently converges to an accurate model. We, specifically, recast the extrapolation part of the inversion in terms of its spectral components for both data and gradient calculation. This admits dispersion free wavefields even at large extrapolation time steps, which improves the efficiency of the inversion. An alternative spectral representation of the depth axis in terms of sine functions allows us to impose a free surface boundary condition, which reflects our medium boundaries more accurately. Using a newly derived perfectly matched layer formulation for this spectral implementation, we can define a finite model with absorbing boundaries. In order to reduce the nonlinearity in FWI, we propose a multiscale conditioning of the objective function through combining the different directional components of the gradient to optimally update the velocity. Through solving a simple optimization problem, it specifically admits the smoothest approximate update while guaranteeing its ascending direction. An application to the Marmousi model demonstrates the capability of the proposed approach and justifies our assertions with respect to cost and convergence.

  2. Computation of a coastal protection, using classical method, the PIANC-method or a full probabilistic approach ?

    NARCIS (Netherlands)

    Verhagen, H.J.

    2003-01-01

    In a classical design approach to breakwaters a design wave height is determined, and filled in into a design formula. Some undefined safety is added. In the method using partial safety coefficients (as developed by PIANC [1992] and recently also adopted by the Coastal Engineering Manual of the US

  3. Improved Full-Newton Step O(nL) Infeasible Interior-Point Method for Linear Optimization

    NARCIS (Netherlands)

    Gu, G.; Mansouri, H.; Zangiabadi, M.; Bai, Y.Q.; Roos, C.

    2009-01-01

    We present several improvements of the full-Newton step infeasible interior-point method for linear optimization introduced by Roos (SIAM J. Optim. 16(4):1110–1136, 2006). Each main step of the method consists of a feasibility step and several centering steps. We use a more natural feasibility step,

  4. STANDARD METHODS FOR THE DETERMINATION OF THE RUNWAY AND SEAKEEPING CHARACTERISTICS OF A SEAPLANE ON THE WATERS DURING FULL-SCALE TESTS

    Directory of Open Access Journals (Sweden)

    A. A. Khokhlov

    2015-01-01

    Full Text Available One of the main stages of the creation of seaplanes and amphibious aircraft are flight certification tests, including tests to determine their landing and sailing characteristics on the water. In accordance with aviation regulations (part 21 certification work is carried out according to the methods of determination of compliance (MOC, which are the main organizational and methodological document for testing. The paper discusses the main provisions of the standard methods for the determination of the runway and sea keeping characteristics of seaplanes and amphibians on water areas with full-scale tests.

  5. A preliminary approach to creating an overview of lactoferrin multi-functionality utilizing a text mining method.

    Science.gov (United States)

    Shimazaki, Kei-ichi; Kushida, Tatsuya

    2010-06-01

    Lactoferrin is a multi-functional metal-binding glycoprotein that exhibits many biological functions of interest to many researchers from the fields of clinical medicine, dentistry, pharmacology, veterinary medicine, nutrition and milk science. To date, a number of academic reports concerning the biological activities of lactoferrin have been published and are easily accessible through public data repositories. However, as the literature is expanding daily, this presents challenges in understanding the larger picture of lactoferrin function and mechanisms. In order to overcome the "analysis paralysis" associated with lactoferrin information, we attempted to apply a text mining method to the accumulated lactoferrin literature. To this end, we used the information extraction system GENPAC (provided by Nalapro Technologies Inc., Tokyo). This information extraction system uses natural language processing and text mining technology. This system analyzes the sentences and titles from abstracts stored in the PubMed database, and can automatically extract binary relations that consist of interactions between genes/proteins, chemicals and diseases/functions. We expect that such information visualization analysis will be useful in determining novel relationships among a multitude of lactoferrin functions and mechanisms. We have demonstrated the utilization of this method to find pathways of lactoferrin participation in neovascularization, Helicobacter pylori attack on gastric mucosa, atopic dermatitis and lipid metabolism.

  6. EFFECTS OF TWO METHODS OF INSTRUCTION ON STUDENTS’ CRITICAL RESPONSE TO PROSE LITERATURE TEXT IN ENGLISH IN SOME SECONDARY SCHOOLS IN BENIN CITY

    Directory of Open Access Journals (Sweden)

    F. O. EZEOKOLI

    2016-08-01

    Full Text Available This study investigated the effects of two methods of instruction on secondary school students’ critical response to Prose Literature text. The study adopted a pretest, posttest, control group quasi experimental design. The participants in the study were 84 Senior Secondary II students of Literature-in-English purposively selected from four Schools in Ikpoba-Okha Local Government Area of Edo State. Two intact classes were randomly assigned to each of the treatment and control groups. Three hypotheses were tested at 0.05 alpha level. The instruments used were: Critical Response to Prose Literature Test (r = .75, Questionnaire on Home Background of Students (r = .82, and Critical Response to Prose Literature Test Marking Guide. Data obtained were subjected to Analysis of Covariance and graph. The results showed significant main effect of treatment on students’ critical response to Prose Literature (F (1, 77 = 44.731; p < .05. Students exposed to Engagement Strategies Method performed better than those exposed to the Conventional Method of instruction. Further, home background of students had no significant effect on students’ critical response to Prose Literature text (F (2, 77 = 4.902; p < .05. There was significant interaction effect of treatment and home background of students on students’ critical response to Prose Literature text (F (2, 77 = 3.508; p < .05. It was concluded that Engagement Strategies Method is effective in promoting students’ critical response to Prose Literature text. Teachers of Literature-in-English should employ Engagement Strategies Method in teaching Prose Literature to students in Senior Secondary Schools.

  7. Sentiment analysis methods for understanding large-scale texts: a case for using continuum-scored words and word shift graphs

    Directory of Open Access Journals (Sweden)

    Andrew J Reagan

    2017-10-01

    Full Text Available Abstract The emergence and global adoption of social media has rendered possible the real-time estimation of population-scale sentiment, an extraordinary capacity which has profound implications for our understanding of human behavior. Given the growing assortment of sentiment-measuring instruments, it is imperative to understand which aspects of sentiment dictionaries contribute to both their classification accuracy and their ability to provide richer understanding of texts. Here, we perform detailed, quantitative tests and qualitative assessments of 6 dictionary-based methods applied to 4 different corpora, and briefly examine a further 20 methods. We show that while inappropriate for sentences, dictionary-based methods are generally robust in their classification accuracy for longer texts. Most importantly they can aid understanding of texts with reliable and meaningful word shift graphs if (1 the dictionary covers a sufficiently large portion of a given text’s lexicon when weighted by word usage frequency; and (2 words are scored on a continuous scale.

  8. A full scale comparative study of methods for generation of functional Dendritic cells for use as cancer vaccines

    Directory of Open Access Journals (Sweden)

    Kvalheim Gunnar

    2007-07-01

    Full Text Available Background Dendritic cells (DCs are professional antigen-presenting cells with the ability to induce primary T-cell responses and are commonly produced by culturing monocytes in the presence of IL-4 and GM-CSF for 5–7 days (Standard DC. Recently, Dauer and co-workers presented a modified protocol for differentiation of human monocytes into mature DCs within 48 hours (Fast DC. Here we report a functional comparison of the two strategies for generation of DCs from human monocytes with adaptions for large-scale clinical use. Methods The Elutra Cell Selection System was used to isolate monocytes after collection of leukapheresis product. The enriched monocytes were cultured in gas permeable Teflon bags with IL-4 and GM-CSF for 24 hours (Fast DC or 5 days (Standard DC to obtain immature DCs. The cells were then transfected with mRNA from the leukemia cell line Jurkat E6 by electroporation and incubated for additional 24 h or 2 days in the presence of pro-inflammatory cytokines (TNFα, IL-1β, IL-6 and PGE2 to obtain mature DCs. Results Mature Fast DC and Standard DC displayed comparable levels of many markers expressed on DC, including HLA-DR, CD83, CD86, CD208 and CCR7. However, compared to Standard DC, mature Fast DC was CD14high CD209low. Fast DC and Standard DC transfected with Jurkat E6-cell mRNA were equally able to elicit T cell specifically recognizing transfected DCs in vitro. IFNγ-secreting T cells were observed in both the CD4+ and CD8+ subsets. Conclusion Our results indicate that mature Fast DC are functional antigen presenting cells (APCs capable of inducing primary T-cell responses, and suggest that these cells may be valuable for generation of anti-tumor vaccines.

  9. Magnetism of hexagonal close-packed nickel calculated by full-potential linearized augmented plane wave method

    International Nuclear Information System (INIS)

    Tian, F.; Tian, H.; Whitmore, L.; Ye, L.Y.

    2015-01-01

    The energy dependent on volume of hexagonal close-packed (hcp) nickel with different magnetism is calculated by full-potential linearized augmented plane wave method. Based on the calculation ferromagnetic state is found to be the most stable state. The magnetic moment of hcp Ni is calculated and compared to those calculated by different pseudo-potential methods. Furthermore, it is also compared to that of face-centered cubic (fcc) one with the reason discussed

  10. Text Mining.

    Science.gov (United States)

    Trybula, Walter J.

    1999-01-01

    Reviews the state of research in text mining, focusing on newer developments. The intent is to describe the disparate investigations currently included under the term text mining and provide a cohesive structure for these efforts. A summary of research identifies key organizations responsible for pushing the development of text mining. A section…

  11. A Study on Environmental Research Trends Using Text-Mining Method - Focus on Spatial information and ICT -

    Science.gov (United States)

    Lee, M. J.; Oh, K. Y.; Joung-ho, L.

    2016-12-01

    Recently there are many research about analysing the interaction between entities by text-mining analysis in various fields. In this paper, we aimed to quantitatively analyse research-trends in the area of environmental research relating either spatial information or ICT (Information and Communications Technology) by Text-mining analysis. To do this, we applied low-dimensional embedding method, clustering analysis, and association rule to find meaningful associative patterns of key words frequently appeared in the articles. As the authors suppose that KCI (Korea Citation Index) articles reflect academic demands, total 1228 KCI articles that have been published from 1996 to 2015 were reviewed and analysed by Text-mining method. First, we derived KCI articles from NDSL(National Discovery for Science Leaders) site. And then we pre-processed their key-words elected from abstract and then classified those in separable sectors. We investigated the appearance rates and association rule of key-words for articles in the two fields: spatial-information and ICT. In order to detect historic trends, analysis was conducted separately for the four periods: 1996-2000, 2001-2005, 2006-2010, 2011-2015. These analysis were conducted with the usage of R-software. As a result, we conformed that environmental research relating spatial information mainly focused upon such fields as `GIS(35%)', `Remote-Sensing(25%)', `environmental theme map(15.7%)'. Next, `ICT technology(23.6%)', `ICT service(5.4%)', `mobile(24%)', `big data(10%)', `AI(7%)' are primarily emerging from environmental research relating ICT. Thus, from the analysis results, this paper asserts that research trends and academic progresses are well-structured to review recent spatial information and ICT technology and the outcomes of the analysis can be an adequate guidelines to establish environment policies and strategies. KEY WORDS: Big data, Test-mining, Environmental research, Spatial-information, ICT Acknowledgements: The

  12. Towards an Integration of Text and Graph Clustering Methods as a Lens for Studying Social Interaction in MOOCs

    Directory of Open Access Journals (Sweden)

    Diyi Yang

    2014-11-01

    Full Text Available In this paper, we describe a novel methodology, grounded in techniques from the field of machine learning, for modeling emerging social structure as it develops in threaded discussion forums, with an eye towards application in the threaded discussions of massive open online courses (MOOCs. This modeling approach integrates two simpler, well established prior techniques, namely one related to social network structure and another related to thematic structure of text. As an illustrative application of the integrated technique’s use and utility, we use it as a lens for exploring student dropout behavior in three different MOOCs. In particular, we use the model to identify twenty emerging subcommunities within the threaded discussions of each of the three MOOCs. We then use a survival model to measure the impact of participation in identified subcommunities on attrition along the way for students who have participated in the course discussion forums of the three courses. In each of three MOOCs we find evidence that participation in two to four subcommunities out of the twenty is associated with significantly higher or lower dropout rates than average. A qualitative post-hoc analysis illustrates how the learned models can be used as a lens for understanding the values and focus of discussions within the subcommunities, and in the illustrative example to think about the association between those and detected higher or lower dropout rates than average in the three courses. Our qualitative analysis demonstrates that the patterns that emerge make sense: It associates evidence of stronger expressed motivation to actively participate in the course as well as evidence of stronger cognitive engagement with the material in subcommunities associated with lower attrition, and the opposite in subcommunities associated with higher attrition. We conclude with a discussion of ways the modeling approach might be applied, along with caveats from limitations, and

  13. Full 3D internal strain measurement for device packaging materials using synchrotron laminography and volumetric digital image correlation method

    International Nuclear Information System (INIS)

    Asada, Takashi; Kimura, Hidehiko; Yamaguchi, Satoshi; Kano, Taiki; Kajiwara, Kentaro

    2014-01-01

    In order to measure full 3D internal strain field of resin molding compound specimens, synchrotron computed tomography and laminography at SPring-8 were performed. Then the reconstructed images were applied to 3D digital image correlation method to compute internal strain field. The results showed that internal strains in resin molding compound could be visualized in this way. (author)

  14. In-vitro evaluation of the accuracy of conventional and digital methods of obtaining full-arch dental impressions.

    Science.gov (United States)

    Ender, Andreas; Mehl, Albert

    2015-01-01

    To investigate the accuracy of conventional and digital impression methods used to obtain full-arch impressions by using an in-vitro reference model. Eight different conventional (polyether, POE; vinylsiloxanether, VSE; direct scannable vinylsiloxanether, VSES; and irreversible hydrocolloid, ALG) and digital (CEREC Bluecam, CER; CEREC Omnicam, OC; Cadent iTero, ITE; and Lava COS, LAV) full-arch impressions were obtained from a reference model with a known morphology, using a highly accurate reference scanner. The impressions obtained were then compared with the original geometry of the reference model and within each test group. A point-to-point measurement of the surface of the model using the signed nearest neighbour method resulted in a mean (10%-90%)/2 percentile value for the difference between the impression and original model (trueness) as well as the difference between impressions within a test group (precision). Trueness values ranged from 11.5 μm (VSE) to 60.2 μm (POE), and precision ranged from 12.3 μm (VSE) to 66.7 μm (POE). Among the test groups, VSE, VSES, and CER showed the highest trueness and precision. The deviation pattern varied with the impression method. Conventional impressions showed high accuracy across the full dental arch in all groups, except POE and ALG. Conventional and digital impression methods show differences regarding full-arch accuracy. Digital impression systems reveal higher local deviations of the full-arch model. Digital intraoral impression systems do not show superior accuracy compared to highly accurate conventional impression techniques. However, they provide excellent clinical results within their indications applying the correct scanning technique.

  15. A GRAMMATICAL ADJUSTMENT ANALYSIS OF STATISTICAL MACHINE TRANSLATION METHOD USED BY GOOGLE TRANSLATE COMPARED TO HUMAN TRANSLATION IN TRANSLATING ENGLISH TEXT TO INDONESIAN

    Directory of Open Access Journals (Sweden)

    Eko Pujianto

    2017-04-01

    Full Text Available Google translate is a program which provides fast, free and effortless translating service. This service uses a unique method to translate. The system is called ―Statistical Machine Translation‖, the newest method in automatic translation. Machine translation (MT is an area of many kinds of different subjects of study and technique from linguistics, computers science, artificial intelligent (AI, translation theory, and statistics. SMT works by using statistical methods and mathematics to process the training data. The training data is corpus-based. It is a compilation of sentences and words of the languages (SL and TL from translation done by human. By using this method, Google let their machine discovers the rules for themselves. They do this by analyzing millions of documents that have already been translated by human translators and then generate the result based on the corpus/training data. However, questions arise when the results of the automatic translation prove to be unreliable in some extent. This paper questions the dependability of Google translate in comparison with grammatical adjustment that naturally characterizes human translators' specific advantage. The attempt is manifested through the analysis of the TL of some texts translated by the SMT. It is expected that by using the sample of TL produced by SMT we can learn the potential flaws of the translation. If such exists, the partial of more substantial undependability of SMT may open more windows to the debates of whether this service may suffice the users‘ need.

  16. Study on Students' Impression Data in Practical Training Using Text Mining Method-Analysis of Considerable Communication.

    Science.gov (United States)

    Teramachi, Hitomi; Sugita, Ikuto; Ino, Yoko; Hayashi, Yuta; Yoshida, Aki; Otsubo, Manami; Ueno, Anri; Katsuno, Hayato; Noguchi, Yoshihiro; Iguchi, Kazuhiro; Tachi, Tomoya

    2017-09-01

    We analyzed impression data and the scale of communication skills of students using text mining method to clarify which area a student was conscious of in communication in practical training. The results revealed that students tended to be conscious of the difference between practical hospital training and practical pharmacy training. In practical hospital training, specific expressions denoting relationships were "patient-visit", "counseling-conduct", "patient-counseling", and "patient-talk". In practical pharmacy training, specific expressions denoting relationships were "patient counseling-conduct", "story-listen", "patient-many", and "patient-visit". In practical hospital training, the word "patient" was connected to many words suggesting that students were conscious of a patient-centered communication. In practical pharmacy training, words such as "patient counseling", "patient", and "explanation" were placed in center and connected with many other words and there was an independent relationship between "communication" and "accept". In conclusion, it was suggested that students attempted active patient-centered communication in practical hospital training, while they were conscious of listening closely in patient counseling in practical pharmacy training.

  17. Proximal gamma-ray spectroscopy to predict soil properties using windows and full-spectrum analysis methods.

    Science.gov (United States)

    Mahmood, Hafiz Sultan; Hoogmoed, Willem B; van Henten, Eldert J

    2013-11-27

    Fine-scale spatial information on soil properties is needed to successfully implement precision agriculture. Proximal gamma-ray spectroscopy has recently emerged as a promising tool to collect fine-scale soil information. The objective of this study was to evaluate a proximal gamma-ray spectrometer to predict several soil properties using energy-windows and full-spectrum analysis methods in two differently managed sandy loam fields: conventional and organic. In the conventional field, both methods predicted clay, pH and total nitrogen with a good accuracy (R2 ≥ 0.56) in the top 0-15 cm soil depth, whereas in the organic field, only clay content was predicted with such accuracy. The highest prediction accuracy was found for total nitrogen (R2 = 0.75) in the conventional field in the energy-windows method. Predictions were better in the top 0-15 cm soil depths than in the 15-30 cm soil depths for individual and combined fields. This implies that gamma-ray spectroscopy can generally benefit soil characterisation for annual crops where the condition of the seedbed is important. Small differences in soil structure (conventional vs. organic) cannot be determined. As for the methodology, we conclude that the energy-windows method can establish relations between radionuclide data and soil properties as accurate as the full-spectrum analysis method.

  18. Improved Full-Newton Step O(nL) Infeasible Interior-Point Method for Linear Optimization

    OpenAIRE

    Gu, G.; Mansouri, H.; Zangiabadi, M.; Bai, Y.Q.; Roos, C.

    2009-01-01

    We present several improvements of the full-Newton step infeasible interior-point method for linear optimization introduced by Roos (SIAM J. Optim. 16(4):1110–1136, 2006). Each main step of the method consists of a feasibility step and several centering steps. We use a more natural feasibility step, which targets the ?+-center of the next pair of perturbed problems. As for the centering steps, we apply a sharper quadratic convergence result, which leads to a slightly wider neighborhood for th...

  19. Dynamic determination of modulus of elasticity of full-size wood composite panels using a vibration method

    Science.gov (United States)

    Cheng Guan; Houjiang Zhang; Lujing Zhou; Xiping Wang

    2015-01-01

    A vibration testing method based on free vibration theory in a ‘‘free–free” support condition was investigated for evaluating the modulus of elasticity (MOE) of full-size wood composite panels (WCPs). Vibration experiments were conducted on three types of WCPs (medium density fibreboard, particleboard, and plywood) to determine the dynamic MOE of the panels. Static...

  20. Method to determine full work of fracture from disk shaped compact tension tests on hot-mix asphalt

    CSIR Research Space (South Africa)

    Denneman, E

    2010-08-01

    Full Text Available crack through the entire ligament area will not be recorded. The missing part of the exponential tail of the load-CMOD curve can be modelled using the methodology provided in this paper. The results indicate that 12.6 per cent of the fracture energy... for Earthquake Engineering Simulation v1.7.5. Berkeley: Pacific Earthquake Engineering Research Center, University of California. Rocco, C., Guinea, G., Planas, J., Elices, M., 1999a. Size effect and boundary conditions in the Brazilian test: Experimental...

  1. Review Essay: The Socio-Analysis of Literary Texts as a Method of Qualitative Social Research, or: What Is the Reality in Fiction?

    Directory of Open Access Journals (Sweden)

    Maja Suderland

    2013-11-01

    Full Text Available With his 1,200+ page study of Robert Musil's novel "The Man Without Qualities," Norbert Christian Wolf has produced a book which many may assume is "unreadable" on account of its enormous size alone. As a work of literary studies, it certainly runs the risk of being largely ignored by the social sciences. From a methodological perspective, however, there are good reasons to engage with this book: Not only does it contain a concise theoretical substantiation and methodological description of the socio-analysis of literary texts according to Pierre Bourdieu, it also demonstrates this method in detail on the corpus of the fictional characters in Musil's novel. In terms of literary studies, Wolf's book can therefore be viewed as a kind of encyclopedia for Musil's work; sociologically, it represents a nuanced socio-analysis of the "history of the calamities of the 20th century." Before looking at the methodological and methodical aspects of Wolf's study, this review essay presents some introductory thoughts on the use of literary works in the social sciences as well as a few cursory references to selected works which introduce or make use of this method themselves. URN: http://nbn-resolving.de/urn:nbn:de:0114-fqs1401205

  2. A Customizable Text Classifier for Text Mining

    Directory of Open Access Journals (Sweden)

    Yun-liang Zhang

    2007-12-01

    Full Text Available Text mining deals with complex and unstructured texts. Usually a particular collection of texts that is specified to one or more domains is necessary. We have developed a customizable text classifier for users to mine the collection automatically. It derives from the sentence category of the HNC theory and corresponding techniques. It can start with a few texts, and it can adjust automatically or be adjusted by user. The user can also control the number of domains chosen and decide the standard with which to choose the texts based on demand and abundance of materials. The performance of the classifier varies with the user's choice.

  3. Contrast-induced nephropathy in patients with diabetes mellitus between iso- and low-osmolar contrast media: A meta-analysis of full-text prospective, randomized controlled trials.

    Science.gov (United States)

    Han, Xiao-Fang; Zhang, Xin-Xiu; Liu, Ke-Mei; Tan, Hua; Zhang, Qiu

    2018-01-01

    This study was conducted to compare iso-osmolar contrast medium, iodixanol, with low-osmolar contrast media (LOCM) for assessing contrast-induced nephropathy (CIN) incidence, exclusively in the diabetic population. A systematic search was conducted for full-text, prospective, randomized controlled trials (RCTs). The primary outcome was incidence of CIN. Medline, Cochrane Central Register of Controlled Trials, and other sources were searched until May 31, 2017. Twelve RCTs finally met the search criteria. Iodixanol did not significantly reduce the risk of CIN (risk ratio [RR]: 0.72, 95% confidence interval (CI): [0.49, 1.04], p = 0.08). However, there was significantly reduced risk of CIN when iodixanol was compared to a LOCM agent iohexol (RR: 0.32, 95% CI [0.12, 0.89]). There were no differences between iodixanol and the other non-iohexol LOCM (RR: 0.92, 95% CI [0.68, 1.25]). In diabetic populations, iodixanol is not associated with a significant reduction of CIN risk. Iodixanol is associated with a reduced risk of CIN compared with iohexol, whereas no significant difference between iodixanol and other LOCM could be found.

  4. Calculation of evolutionary correlation between individual genes and full-length genome: a method useful for choosing phylogenetic markers for molecular epidemiology.

    Directory of Open Access Journals (Sweden)

    Shuai Wang

    Full Text Available Individual genes or regions are still commonly used to estimate the phylogenetic relationships among viral isolates. The genomic regions that can faithfully provide assessments consistent with those predicted with full-length genome sequences would be preferable to serve as good candidates of the phylogenetic markers for molecular epidemiological studies of many viruses. Here we employed a statistical method to evaluate the evolutionary relationships between individual viral genes and full-length genomes without tree construction as a way to determine which gene can match the genome well in phylogenetic analyses. This method was performed by calculation of linear correlations between the genetic distance matrices of aligned individual gene sequences and aligned genome sequences. We applied this method to the phylogenetic analyses of porcine circovirus 2 (PCV2, measles virus (MV, hepatitis E virus (HEV and Japanese encephalitis virus (JEV. Phylogenetic trees were constructed for comparisons and the possible factors affecting the method accuracy were also discussed in the calculations. The results revealed that this method could produce results consistent with those of previous studies about the proper consensus sequences that could be successfully used as phylogenetic markers. And our results also suggested that these evolutionary correlations could provide useful information for identifying genes that could be used effectively to infer the genetic relationships.

  5. Nursing Research Using Historical Methods: Qualitative Designs and Methods in Nursing Mary de Chesnay Nursing Research Using Historical Methods: Qualitative Designs and Methods in Nursing 236pp £65.95 Springer 9780826126177 0826126170 [Formula: see text].

    Science.gov (United States)

    2016-11-18

    Just as the present can be understood by examining the past, the use of historical research methods can help nurses to understand the present to influence the future. This text emphasises how this approach to nursing research can provide a contextual framework from which nurses can consider their own practice.

  6. Full Quantum Dynamics Simulation of a Realistic Molecular System Using the Adaptive Time-Dependent Density Matrix Renormalization Group Method.

    Science.gov (United States)

    Yao, Yao; Sun, Ke-Wei; Luo, Zhen; Ma, Haibo

    2018-01-18

    The accurate theoretical interpretation of ultrafast time-resolved spectroscopy experiments relies on full quantum dynamics simulations for the investigated system, which is nevertheless computationally prohibitive for realistic molecular systems with a large number of electronic and/or vibrational degrees of freedom. In this work, we propose a unitary transformation approach for realistic vibronic Hamiltonians, which can be coped with using the adaptive time-dependent density matrix renormalization group (t-DMRG) method to efficiently evolve the nonadiabatic dynamics of a large molecular system. We demonstrate the accuracy and efficiency of this approach with an example of simulating the exciton dissociation process within an oligothiophene/fullerene heterojunction, indicating that t-DMRG can be a promising method for full quantum dynamics simulation in large chemical systems. Moreover, it is also shown that the proper vibronic features in the ultrafast electronic process can be obtained by simulating the two-dimensional (2D) electronic spectrum by virtue of the high computational efficiency of the t-DMRG method.

  7. A method for projecting full-scale performance of CO/sub 2/ flooding in the Willard Unit

    International Nuclear Information System (INIS)

    Bilhartz, H.L.; Charlson, G.S.; Stalkup, F.I.; Miller, C.C.

    1985-01-01

    A non-producing CO/sub 2/ flood tertiary recovery test was recently completed in the Willard Unit of Wasson Field. Flood responses during waterflood and alternate injection of CO/sub 2/ and water were monitored at a logging observation well using compensated neutron and pulsed neutron logs. A pressure core was taken to measure residual oil saturations at the test conclusion. The overall objective of the testing was to obtain information for evaluating the potential for full-scale CO/sub 2/ flooding in the unit. Out method for making this evaluation involves: (1) defining CO/sub 2/ flood displacement efficiency and representing this efficiency in a miscible flood reservoir simulator; (2) defining a representative average reservoir description; and (3) projecting full-scale CO/sub 2/ flood performance with the simulator. The paper provides a status report on progress to assess CO/sub 2/ flooding potential for the Willard Unit in this manner

  8. Full-scale demonstration of EBS construction technology I. Block, pellet and in-situ compaction method

    International Nuclear Information System (INIS)

    Toguri, Satohito; Asano, Hidekazu; Takao, Hajime; Matsuda, Takeshi; Amemiya, Kiyoshi

    2008-01-01

    (i) Bentonite Block: Applicability of manufacturing technology of buffer material was verified by manufacturing of full scale bentonite ring which consists of one-eight (1/8) dividing block (Outside Diameter (OD): 2.220 mm H: 300 mm). Density characteristic, dimension and scale effect, which were considered the tunnel environment under transportation, were evaluated. Vacuum suction technology was selected as handling technology for the ring. Hoisting characteristic of vacuum suction technology was presented through evaluation of the mechanical property of buffer material, the friction between blocks, etc. by using a full-scale bentonite ring (OD 2.200 mm, H 300 mm). And design of bentonite block and emplacement equipment were presented in consideration of manufacturability of the block, stability of handling and improvement of emplacement efficiency. (ii) Bentonite Pellet Filling: Basic characteristics such as water penetration, swelling and thermal conductivity of various kinds of bentonite pellet were collected by laboratory scale tests. Applicability of pellet filling technology was evaluated by horizontal filling test using a simulated full-scale drift tunnel (OD 2.200 mm, L 6 m) . Filling density, grain size distribution, etc. were also measured. (iii) In-Situ Compaction of Bentonite: Dynamic compaction method (heavy weight fall method) was selected as in-situ compaction technology. Compacting examination which used a full scale disposal pit (OD 2.360 mm) was carried out. Basic specification of compacting equipment and applicability of in-situ compaction technology were presented. Density, density distribution of buffer material and energy acted on the wall of the pit, were also measured. (author)

  9. IMPROVING THE STUDENTS’ COMPETENCE IN DEVELOPING A PARAGRAPH OF DISCUSSION TEXTS USING THEMATIC PROGRESSION PATTERNS WITH COOPERATIVE LEARNING METHOD (TP-CL

    Directory of Open Access Journals (Sweden)

    Farikah Farikah

    2017-04-01

    Full Text Available This research analyzes the effectiveness of thematic progression patterns with cooperative learning method (TP-CL in teaching the students’ competence in developing a paragraph of discussion texts and the effectiveness of teaching-learning activities of paragraph writing class. This mixed method research was conducted in the English Department of Tidar University of Magelang in the academic year of 2011/2012. The sample of this research were the fourth semester students of UTM. To collect the research data, writing test, observation and interview were used while to analyze the data, she used descriptive and inferential statistics for quantitative data and constant comparative method for qualitative data. The first result shows that implementing TP-CL is effective for teaching the students’ competence in developing a paragraph of discussion texts. It can be seen from the results of writing tests. Based on Brown and Bailey’s theory in Brown (2004, it can be seen that the mean score of organization element in pretest is 10.77 and the post test of paragraph writing is 16.73. The second result shows that there is an improvement of the effectiveness of teaching-learning activity of writing class by implementing TP-CL. The effectiveness can be seen from the indicators of effective teaching based on Blum in Nunan and Lamb (1996 and Creemer’s theory (1994. The results suggest that writing lecturers should introduce to develop a paragraph to the students in order that they can write paragraphs coherently and various theme in order that they can write the paragraph artistically.

  10. Probabilistic methods of optimization of scheduled tests for heat equipment of safety systems of reactor at full power

    International Nuclear Information System (INIS)

    Bilej, D.V.; Fridman, N.A.; Kolykhanov, V.N.; Skalozubov, V.I.

    2004-01-01

    This article generalises the basic results of a long-term teamwork with respect to a scientific and technical substantiation of perfection of the regulations of safe operation power units with VVER. This perfection is concerning a periodicity and volumes of tests of safety systems when a reactor works at full power. The article shows that the application of the probabilistic approaches connected to minimisation of a risk criterion function is an effective methodical base for the optimisation. For certain safety systems of serial power units with VVER 1000 the results of calculated substantiations are presented

  11. Evaluation of protection factors provided by full-face masks using man-test method at workplace

    International Nuclear Information System (INIS)

    Izumi, Yukio; Kinouchi, Nobuyuki; Ikezawa, Yoshio.

    1994-01-01

    From a practical angle of view to estimate the protection factors (PFs) provided by full-face masks, a number of protection factors were measured with a man-test apparatus just before the wearers started to do radiation work in radiation controlled area. PFs of the total number of 2,279 cases were measured under five simulated working conditions. The measured PFs were widely distributed from 2.3 to 6,700. About 95% of workers obtained PFs more than 50, and about 64% showed much higher PFs more than 1,000 due to good fitting. In the case of some persons, the measured PFs irregularly varied and changed to a large degree. This method is a reliable technique that has been confirmed to protect unexpected internal exposure. From the results obtained, the method should be necessary to provide a better mask and higher PF for each worker. (author)

  12. Depth Estimates for Slingram Electromagnetic Anomalies from Dipping Sheet-like Bodies by the Normalized Full Gradient Method

    Science.gov (United States)

    Dondurur, Derman

    2005-11-01

    The Normalized Full Gradient (NFG) method was proposed in the mid 1960s and was generally used for the downward continuation of the potential field data. The method eliminates the side oscillations which appeared on the continuation curves when passing through anomalous body depth. In this study, the NFG method was applied to Slingram electromagnetic anomalies to obtain the depth of the anomalous body. Some experiments were performed on the theoretical Slingram model anomalies in a free space environment using a perfectly conductive thin tabular conductor with an infinite depth extent. The theoretical Slingram responses were obtained for different depths, dip angles and coil separations, and it was observed from NFG fields of the theoretical anomalies that the NFG sections yield the depth information of top of the conductor at low harmonic numbers. The NFG sections consisted of two main local maxima located at both sides of the central negative Slingram anomalies. It is concluded that these two maxima also locate the maximum anomaly gradient points, which indicates the depth of the anomaly target directly. For both theoretical and field data, the depth of the maximum value on the NFG sections corresponds to the depth of the upper edge of the anomalous conductor. The NFG method was applied to the in-phase component and correct depth estimates were obtained even for the horizontal tabular conductor. Depth values could be estimated with a relatively small error percentage when the conductive model was near-vertical and/or the conductor depth was larger.

  13. A Potential Method for Body and Surface Wave Propagation in Transversely Isotropic Half- and Full-Spaces

    Directory of Open Access Journals (Sweden)

    Mehdi Raoofian Naeeni

    2016-12-01

    Full Text Available The problem of propagation of plane wave including body and surface waves propagating in a transversely isotropic half-space with a depth-wise axis of material symmetry is investigated in details. Using the advantage of representation of displacement fields in terms of two complete scalar potential functions, the coupled equations of motion are uncoupled and reduced to two independent equations for potential functions. In this paper, the secular equations for determination of body and surface wave velocities are derived in terms of both elasticity coefficients and the direction of propagation. In particular, the longitudinal, transverse and Rayleigh wave velocities are determined in explicit forms. It is also shown that in transversely isotropic materials, a Rayleigh wave may propagate in different manner from that of isotropic materials. Some numerical results for synthetic transversely isotropic materials are also illustrated to show the behavior of wave motion due to anisotropic nature of the problem.

  14. Evaluating the Infiltration Performance of Eight Dutch Permeable Pavements Using a New Full-Scale Infiltration Testing Method

    Directory of Open Access Journals (Sweden)

    Floris Boogaard

    2014-07-01

    Full Text Available Permeable pavements are a type of sustainable urban drainage system (SUDS technique that are used around the world to infiltrate and treat urban stormwater runoff and to minimize runoff volumes. Urban stormwater runoff contains significant concentrations of suspended sediments that can cause clogging and reduce the infiltration capacity and effectiveness of permeable pavements. It is important for stormwater managers to be able to determine when the level of clogging has reached an unacceptable level, so that they can schedule maintenance or replacement activities as required. Newly-installed permeable pavements in the Netherlands must demonstrate a minimum infiltration capacity of 194 mm/h (540 l/s/ha. Other commonly used permeable pavement guidelines in the Netherlands recommend that maintenance is undertaken on permeable pavements when the infiltration falls below 0.50 m/d (20.8 mm/h. This study used a newly-developed, full-scale infiltration test procedure to evaluate the infiltration performance of eight permeable pavements in five municipalities that had been in service for over seven years in the Netherlands. The determined infiltration capacities vary between 29 and 342 mm/h. Two of the eight pavements show an infiltration capacity higher than 194 mm/h, and all infiltration capacities are higher than 20.8 mm/h. According to the guidelines, this suggests that none of the pavements tested in this study would require immediate maintenance.

  15. Improvement of resolution in full-view linear-array photoacoustic computed tomography using a novel adaptive weighting method

    Science.gov (United States)

    Omidi, Parsa; Diop, Mamadou; Carson, Jeffrey; Nasiriavanaki, Mohammadreza

    2017-03-01

    Linear-array-based photoacoustic computed tomography is a popular methodology for deep and high resolution imaging. However, issues such as phase aberration, side-lobe effects, and propagation limitations deteriorate the resolution. The effect of phase aberration due to acoustic attenuation and constant assumption of the speed of sound (SoS) can be reduced by applying an adaptive weighting method such as the coherence factor (CF). Utilizing an adaptive beamforming algorithm such as the minimum variance (MV) can improve the resolution at the focal point by eliminating the side-lobes. Moreover, invisibility of directional objects emitting parallel to the detection plane, such as vessels and other absorbing structures stretched in the direction perpendicular to the detection plane can degrade resolution. In this study, we propose a full-view array level weighting algorithm in which different weighs are assigned to different positions of the linear array based on an orientation algorithm which uses the histogram of oriented gradient (HOG). Simulation results obtained from a synthetic phantom show the superior performance of the proposed method over the existing reconstruction methods.

  16. The Linearized Bregman Method for Frugal Full-waveform Inversion with Compressive Sensing and Sparsity-promoting

    Science.gov (United States)

    Chai, Xintao; Tang, Genyang; Peng, Ronghua; Liu, Shaoyong

    2018-03-01

    Full-waveform inversion (FWI) reconstructs the subsurface properties from acquired seismic data via minimization of the misfit between observed and simulated data. However, FWI suffers from considerable computational costs resulting from the numerical solution of the wave equation for each source at each iteration. To reduce the computational burden, constructing supershots by combining several sources (aka source encoding) allows mitigation of the number of simulations at each iteration, but it gives rise to crosstalk artifacts because of interference between the individual sources of the supershot. A modified Gauss-Newton FWI (MGNFWI) approach showed that as long as the difference between the initial and true models permits a sparse representation, the ℓ _1-norm constrained model updates suppress subsampling-related artifacts. However, the spectral-projected gradient ℓ _1 (SPGℓ _1) algorithm employed by MGNFWI is rather complicated that makes its implementation difficult. To facilitate realistic applications, we adapt a linearized Bregman (LB) method to sparsity-promoting FWI (SPFWI) because of the efficiency and simplicity of LB in the framework of ℓ _1-norm constrained optimization problem and compressive sensing. Numerical experiments performed with the BP Salt model, the Marmousi model and the BG Compass model verify the following points. The FWI result with LB solving ℓ _1-norm sparsity-promoting problem for the model update outperforms that generated by solving ℓ _2-norm problem in terms of crosstalk elimination and high-fidelity results. The simpler LB method performs comparably and even superiorly to the complicated SPGℓ _1 method in terms of computational efficiency and model quality, making the LB method a viable alternative for realistic implementations of SPFWI.

  17. Study on the ultrasonic inspection method using the full matrix capture for the in service railway wheel

    Energy Technology Data Exchange (ETDEWEB)

    Peng, Jianping; Wang, Li; Zhang, Yu; Gao, Xiaorong; Wang, Zeyong; Peng, Chaoyong [NDT Research Center, School of Physical Science and Technology, Southwest Jiaotong University, Chengdu 610031 (China)

    2014-02-18

    The quality of wheel is especially important for the safety of high speed railway. In this paper, a new ultrasonic array inspection method, the Full Matrix Capture (FMC) has been studied and applied to the high speed railway wheel inspection, especially in the wheel web from the tread. Firstly, the principle of FMC and TFM algorithm is discussed, and then the new optimization is applied to the standard FMC; Secondly the fundamentals of optimization is described in detail and the performance is analyzed. Finally, the experiment has been built with a standard phased array block and railway wheel, and then the testing results are discussed and analyzed. It is demonstrated that this change for the ultrasonic data acquisition and image reconstruction has higher efficiency and lower cost comparing to the FMC's procedure.

  18. Centroid and full-width at half maximum uncertainties of histogrammed data with an underlying Gaussian distribution -- The moments method

    International Nuclear Information System (INIS)

    Valentine, J.D.; Rana, A.E.

    1996-01-01

    The effect of approximating a continuous Gaussian distribution with histogrammed data are studied. The expressions for theoretical uncertainties in centroid and full-width at half maximum (FWHM), as determined by calculation of moments, are derived using the error propagation method for a histogrammed Gaussian distribution. The results are compared with the corresponding pseudo-experimental uncertainties for computer-generated histogrammed Gaussian peaks to demonstrate the effect of binning the data. It is shown that increasing the number of bins in the histogram improves the continuous distribution approximation. For example, a FWHM ≥ 9 and FWHM ≥ 12 bins are needed to reduce the pseudo-experimental standard deviation of FWHM to within ≥5% and ≥1%, respectively, of the theoretical value for a peak containing 10,000 counts. In addition, the uncertainties in the centroid and FWHM as a function of peak area are studied. Finally, Sheppard's correction is applied to partially correct for the binning effect

  19. Projection potentials and angular momentum convergence of total energies in the full-potential Korringa–Kohn–Rostoker method

    International Nuclear Information System (INIS)

    Zeller, Rudolf

    2013-01-01

    Although the full-potential Korringa–Kohn–Rostoker Green function method yields accurate results for many physical properties, the convergence of calculated total energies with respect to the angular momentum cutoff is usually considered to be less satisfactory. This is surprising because accurate single-particle energies are expected if they are calculated by Lloyd’s formula and because accurate densities and hence accurate double-counting energies should result from the total energy variational principle. It is shown how the concept of projection potentials can be used as a tool to analyse the convergence behaviour. The key factor blocking fast convergence is identified and it is illustrated how total energies can be improved with only a modest increase of computing time. (paper)

  20. Imaging disturbance zones ahead of a tunnel by elastic full-waveform inversion: Adjoint gradient based inversion vs. parameter space reduction using a level-set method

    Directory of Open Access Journals (Sweden)

    Andre Lamert

    2018-03-01

    Full Text Available We present and compare two flexible and effective methodologies to predict disturbance zones ahead of underground tunnels by using elastic full-waveform inversion. One methodology uses a linearized, iterative approach based on misfit gradients computed with the adjoint method while the other uses iterative, gradient-free unscented Kalman filtering in conjunction with a level-set representation. Whereas the former does not involve a priori assumptions on the distribution of elastic properties ahead of the tunnel, the latter introduces a massive reduction in the number of explicit model parameters to be inverted for by focusing on the geometric form of potential disturbances and their average elastic properties. Both imaging methodologies are validated through successful reconstructions of simple disturbances. As an application, we consider an elastic multiple disturbance scenario. By using identical synthetic time-domain seismograms as test data, we obtain satisfactory, albeit different, reconstruction results from the two inversion methodologies. The computational costs of both approaches are of the same order of magnitude, with the gradient-based approach showing a slight advantage. The model parameter space reduction approach compensates for this by additionally providing a posteriori estimates of model parameter uncertainty. Keywords: Tunnel seismics, Full waveform inversion, Seismic waves, Level-set method, Adjoint method, Kalman filter

  1. A simple method to achieve full-field and real-scale reconstruction using a movable stereo rig

    Science.gov (United States)

    Gu, Feifei; Zhao, Hong; Song, Zhan; Tang, Suming

    2018-06-01

    This paper introduces a simple method to achieve full-field and real-scale reconstruction using a movable binocular vision system (MBVS). The MBVS is composed of two cameras, one is called the tracking camera, and the other is called the working camera. The tracking camera is used for tracking the positions of the MBVS and the working camera is used for the 3D reconstruction task. The MBVS has several advantages compared with a single moving camera or multi-camera networks. Firstly, the MBVS could recover the real-scale-depth-information from the captured image sequences without using auxiliary objects whose geometry or motion should be precisely known. Secondly, the removability of the system could guarantee appropriate baselines to supply more robust point correspondences. Additionally, using one camera could avoid the drawback which exists in multi-camera networks, that the variability of a cameras’ parameters and performance could significantly affect the accuracy and robustness of the feature extraction and stereo matching methods. The proposed framework consists of local reconstruction and initial pose estimation of the MBVS based on transferable features, followed by overall optimization and accurate integration of multi-view 3D reconstruction data. The whole process requires no information other than the input images. The framework has been verified with real data, and very good results have been obtained.

  2. A rapid method for simultaneously determining ethanol and methanol content in wines by full evaporation headspace gas chromatography.

    Science.gov (United States)

    Zhang, Chun-Yun; Lin, Neng-Biao; Chai, Xin-Sheng; Zhong-Li; Barnes, Donald G

    2015-09-15

    This work reports on a full evaporation headspace gas chromatographic (FE HS-GC) method for simultaneously determining the ethanol (EtOH) and methanol (MeOH) content in wines. A small sample (10μL) was placed in a headspace sample vial, and a near-complete mass transfer of ethanol and methanol from the liquid sample to the vapor phase was obtained within three minutes at a temperature of 105°C, which allowed the measurement of the EtOH and MeOH content in the sample by GC. The results showed excellent precision and accuracy, as shown by the reproducibilities of 1.02% and 2.11% for EtOH and MeOH, respectively, and recoveries that ranged from 96.1% to 104% for both alcohols. The method is efficient, accurate and suitable for the determination of EtOH and MeOH in wine production and quality control. Copyright © 2015 Elsevier Ltd. All rights reserved.

  3. GafChromic EBT film dosimetry with flatbed CCD scanner: a novel background correction method and full dose uncertainty analysis.

    Science.gov (United States)

    Saur, Sigrun; Frengen, Jomar

    2008-07-01

    Film dosimetry using radiochromic EBT film in combination with a flatbed charge coupled device scanner is a useful method both for two-dimensional verification of intensity-modulated radiation treatment plans and for general quality assurance of treatment planning systems and linear accelerators. Unfortunately, the response over the scanner area is nonuniform, and when not corrected for, this results in a systematic error in the measured dose which is both dose and position dependent. In this study a novel method for background correction is presented. The method is based on the subtraction of a correction matrix, a matrix that is based on scans of films that are irradiated to nine dose levels in the range 0.08-2.93 Gy. Because the response of the film is dependent on the film's orientation with respect to the scanner, correction matrices for both landscape oriented and portrait oriented scans were made. In addition to the background correction method, a full dose uncertainty analysis of the film dosimetry procedure was performed. This analysis takes into account the fit uncertainty of the calibration curve, the variation in response for different film sheets, the nonuniformity after background correction, and the noise in the scanned films. The film analysis was performed for film pieces of size 16 x 16 cm, all with the same lot number, and all irradiations were done perpendicular onto the films. The results show that the 2-sigma dose uncertainty at 2 Gy is about 5% and 3.5% for landscape and portrait scans, respectively. The uncertainty gradually increases as the dose decreases, but at 1 Gy the 2-sigma dose uncertainty is still as good as 6% and 4% for landscape and portrait scans, respectively. The study shows that film dosimetry using GafChromic EBT film, an Epson Expression 1680 Professional scanner and a dedicated background correction technique gives precise and accurate results. For the purpose of dosimetric verification, the calculated dose distribution

  4. GafChromic EBT film dosimetry with flatbed CCD scanner: A novel background correction method and full dose uncertainty analysis

    International Nuclear Information System (INIS)

    Saur, Sigrun; Frengen, Jomar

    2008-01-01

    Film dosimetry using radiochromic EBT film in combination with a flatbed charge coupled device scanner is a useful method both for two-dimensional verification of intensity-modulated radiation treatment plans and for general quality assurance of treatment planning systems and linear accelerators. Unfortunately, the response over the scanner area is nonuniform, and when not corrected for, this results in a systematic error in the measured dose which is both dose and position dependent. In this study a novel method for background correction is presented. The method is based on the subtraction of a correction matrix, a matrix that is based on scans of films that are irradiated to nine dose levels in the range 0.08-2.93 Gy. Because the response of the film is dependent on the film's orientation with respect to the scanner, correction matrices for both landscape oriented and portrait oriented scans were made. In addition to the background correction method, a full dose uncertainty analysis of the film dosimetry procedure was performed. This analysis takes into account the fit uncertainty of the calibration curve, the variation in response for different film sheets, the nonuniformity after background correction, and the noise in the scanned films. The film analysis was performed for film pieces of size 16x16 cm, all with the same lot number, and all irradiations were done perpendicular onto the films. The results show that the 2-sigma dose uncertainty at 2 Gy is about 5% and 3.5% for landscape and portrait scans, respectively. The uncertainty gradually increases as the dose decreases, but at 1 Gy the 2-sigma dose uncertainty is still as good as 6% and 4% for landscape and portrait scans, respectively. The study shows that film dosimetry using GafChromic EBT film, an Epson Expression 1680 Professional scanner and a dedicated background correction technique gives precise and accurate results. For the purpose of dosimetric verification, the calculated dose distribution can

  5. A Novel Choice Procedure of Magnetic Component Values for Phase Shifted Full Bridge Converters with a Variable Dead-Time Control Method

    Directory of Open Access Journals (Sweden)

    Lei Zhao

    2015-09-01

    Full Text Available Magnetic components are important parts of the phase shifted full bridge (PSFB converter. During the dead-time of switches located in the same leg, the converter can achieve zero-voltage-switching (ZVS by using the energies stored in magnetic components to discharge or charge the output capacitances of switches. Dead-time is usually calculated under a given set of pre-defined load condition which results in that the available energies are insufficient and ZVS capability is lost at light loads. In this paper, the PSFB converter is controlled by variable dead-time method and thus full advantage can be taken of the energies stored in magnetic components. Considering that dead-time has a great effect on ZVS, the relationship between available energies and magnetic component values is formulated by analyzing the equivalent circuits during dead-time intervals. Magnetic component values are chosen based on such relationship. The proposed choice procedure can make the available energies greater than the required energies for ZVS operation over a wide range of load conditions. Moreover, the burst mode control is adopted in order to reduce the standby power loss. Experimental results coincide with the theoretical analysis. The proposed method is a simple and practical solution to extend the ZVS range.

  6. Optical fiber-based full Mueller polarimeter for endoscopic imaging using a two-wavelength simultaneous measurement method.

    Science.gov (United States)

    Vizet, Jérémy; Manhas, Sandeep; Tran, Jacqueline; Validire, Pierre; Benali, Abdelali; Garcia-Caurel, Enric; Pierangelo, Angelo; De Martino, Antonello; Pagnoux, Dominique

    2016-07-01

    This paper reports a technique based on spectrally differential measurement for determining the full Mueller matrix of a biological sample through an optical fiber. In this technique, two close wavelengths were used simultaneously, one for characterizing the fiber and the other for characterizing the assembly of fiber and sample. The characteristics of the fiber measured at one wavelength were used to decouple its contribution from the measurement on the assembly of fiber and sample and then to extract sample Mueller matrix at the second wavelength. The proof of concept was experimentally validated by measuring polarimetric parameters of various calibrated optical components through the optical fiber. Then, polarimetric images of histological cuts of human colon tissues were measured, and retardance, diattenuation, and orientation of the main axes of fibrillar regions were displayed. Finally, these images were successfully compared with images obtained by a free space Mueller microscope. As the reported method does not use any moving component, it offers attractive integration possibilities with an endoscopic probe.

  7. A Full-wave Model for Wave Propagation and Dissipation in the Inner Magnetosphere Using the Finite Element Method

    International Nuclear Information System (INIS)

    Valeo, Ernest; Johnson, Jay R.; Kim, Eun-Hwa; Phillips, Cynthia

    2012-01-01

    A wide variety of plasma waves play an important role in the energization and loss of particles in the inner magnetosphere. Our ability to understand and model wave-particle interactions in this region requires improved knowledge of the spatial distribution and properties of these waves as well as improved understanding of how the waves depend on changes in solar wind forcing and/or geomagnetic activity. To this end, we have developed a two-dimensional, finite element code that solves the full wave equations in global magnetospheric geometry. The code describes three-dimensional wave structure including mode conversion when ULF, EMIC, and whistler waves are launched in a two-dimensional axisymmetric background plasma with general magnetic field topology. We illustrate the capabilities of the code by examining the role of plasmaspheric plumes on magnetosonic wave propagation; mode conversion at the ion-ion and Alfven resonances resulting from external, solar wind compressions; and wave structure and mode conversion of electromagnetic ion cyclotron waves launched in the equatorial magnetosphere, which propagate along the magnetic field lines toward the ionosphere. We also discuss advantages of the finite element method for resolving resonant structures, and how the model may be adapted to include nonlocal kinetic effects.

  8. Biomarker Identification Using Text Mining

    Directory of Open Access Journals (Sweden)

    Hui Li

    2012-01-01

    Full Text Available Identifying molecular biomarkers has become one of the important tasks for scientists to assess the different phenotypic states of cells or organisms correlated to the genotypes of diseases from large-scale biological data. In this paper, we proposed a text-mining-based method to discover biomarkers from PubMed. First, we construct a database based on a dictionary, and then we used a finite state machine to identify the biomarkers. Our method of text mining provides a highly reliable approach to discover the biomarkers in the PubMed database.

  9. Hypertension Health Promotion via Text Messaging at a Community Health Center in South Africa: A Mixed Methods Study.

    Science.gov (United States)

    Hacking, Damian; Haricharan, Hanne J; Brittain, Kirsty; Lau, Yan Kwan; Cassidy, Tali; Heap, Marion

    2016-03-10

    The use of mobile phones to deliver health care (mHealth) is increasing in popularity due to the high prevalence of mobile phone penetration. This is seen in developing countries, where mHealth may be particularly useful in overcoming traditional access barriers. Non-communicable diseases may be particularly amenable to mHealth interventions, and hypertension is one with an escalating burden in the developing world. The objective of this study was to test whether the dissemination of health information via a short message service (SMS) led to improvements in health knowledge and self-reported health-related behaviors. A mixed methods study was carried out among a cohort of 223 hypertension clinic patients, in a resource-poor setting in Cape Town, South Africa, in 2012. Hypertensive outpatients were recruited at the clinic and administered a baseline questionnaire to establish existing knowledge of hypertension. Participants were then randomly assigned to intervention or control groups. The intervention group received 90 SMSes over a period of 17 weeks. Thereafter, the baseline questionnaire was readministered to both groups to gauge if any improvements in health knowledge had occurred. Those who received SMSes were asked additional questions about health-related behavior changes. A focus group was then conducted to obtain in-depth feedback about participants' experience with, and response to, the SMS campaign. No statistically significant changes in overall health knowledge were observed between the control and intervention groups. The intervention group had positive increases in self-reported behavior changes. These were reaffirmed by the focus groups, which also revealed a strong preference for the SMS campaign and the belief that the SMSes acted as a reminder to change, as opposed to providing new information. Although the content of the SMSes was not new, and did not improve health knowledge, SMSes were effective in motivating positive self-reported behavior

  10. Conditions governing the acceptance of radioactive wastes by the Hauptabteilung Dekontaminationsbetriebe (HDB). Full text of legal provisions, issue no.6 of July 1, 1991, as amended until January 1, 1995

    International Nuclear Information System (INIS)

    1995-01-01

    The conditions apply to the acceptance of radwaste by the Main Decontamination Dept. (HDB) of Karlsruhe Research Center, including radioactive remnants, contaminated plant components, and primary waste from the following waste generators: Institutes of the Karlsruhe Research Center, facilities located within the Center but run by other organisations, other outside facilities not linked with the Center, as e.g. waste generators in Baden-Wuerttemberg obliged to deliver their radwaste to the Radwaste Collecting Site of the Land of Baden-Wuerttemberg. Amendments are marked at the right-hand margin of the text

  11. Morphology effects on the bandgap of silicon nanocrystals—Numerically modelled by a full multi-grid method

    Science.gov (United States)

    Puthen Veettil, Binesh; König, Dirk; Huang, Shujuan; Patterson, Robert; Conibeer, Gavin

    2017-02-01

    Silicon nanocrystals embedded in a dielectric matrix have been considered a potential candidate for many optoelectronic and photovoltaic applications and have been under vigorous study in recent years. One of the main properties of interest in this application is the absorption bandgap, which is determined by the quantum confinement of silicon nanocrystals. The ability to predict the absorption bandgap is a key step in designing an optimum solar cell using this material. Although several higher level algorithms are available to predict the electronic confinement in these nanocrystals, most of them make regular-shape assumptions for the ease of computation. In this work, we present a model for the accurate prediction of the quantum confinement in silicon nanocrystals of non-regular shape by employing an efficient, self-consistent Full-Multi-Grid method. Confined energies in spherical, elongated, and arbitrarily shaped nanocrystals are calculated. The excited level calculations quantify the wavefunction coupling and energy level splitting arising due to the proximity of dots. The splitting magnitude was found to be as high as 0.1 eV for the 2 nm size silicon quantum dots. The decrease in confinement energy due to the elongation of dots was found to be more than 0.2 eV, and the trend was similar for different dielectric materials. Theoretical predictions were compared to the results from optical and structural characterisation and found to be in agreement. The loss of degeneracy in highly asymmetric quantum dots, such as a "horse-shoe" shaped quantum dot, significantly affects the excited state energies.

  12. Morphision: A method for subjective evaluation of metamorphopsia in patients with unilateral macular pathology (i.e., full thickness macular hole and epiretinal membrane

    Directory of Open Access Journals (Sweden)

    Marta Ugarte

    2013-01-01

    Full Text Available Background: Lack of clinical tests to quantify spatial components of distortion in patients with full thickness macular holes (FTMH and epiretinal membranes (ERM. Aim: To develop a test for subjective evaluation of visual distortion in the central visual field around fixation in patients with unilateral FTMH or ERM. Settings and Design: Prospective case-control study carried out at tertiary referral center. Materials and Methods: Twenty-five patients with unilateral macular disease (13 macular epiretinal membranes, 12 full-thickness macular holes, and nine controls (without ocular pathology underwent ophthalmological examination with logMAR ETDRS visual acuity, near vision and contrast sensitivity assessed. Macular optical coherence tomography and metamorphopsia assessment using Morphision test was also carried out. This test consists of a set of modified Amsler charts for detection, identification, and subjective quantification of visual distortion in the central visual field around fixation. Morphision test content and construct validity, and reliability (test-retest method were evaluated. Sixteen patients completed an unstructured survey on test performance and preference. Results: Every patient with unilateral FTMH or ERM identified a particular chart using Morphision test (content validity. None of the normal subjects without symptoms of metamorphopsia identified any distortion (construct validity. Test-retest showed a 100% consistency for frequency and 67% for amplitude. The mean amplitude difference between measurements was 0.02 degrees (SD = 0.038. The coefficient of repeatability was 0.075. There was a correlation between Morphision amplitude score and visual acuity and contrast sensitivity, individually. Conclusions: Morphision test allowed detection and subjective quantification of metamorphopsia in the clinical setting in our patients with unilateral macular epiretinal membranes and full thickness macular holes.

  13. A Study of the Subject Categorization of the MIS-related Journals in the ISI Databases Using Topical Features in the Text Content and Machine Learning Methods

    Directory of Open Access Journals (Sweden)

    Sung-Chien Lin

    2015-07-01

    Full Text Available In this study we analyzed and discussed that the MIS-related journals under the ISI subject category of IS&LS are simultaneously given with subject category Management, using methods of topic modeling, journal clustering and subject category prediction. In the experiment of journal clustering, all journals under subject category Management and other journals also having similar topical features can be gathered into a cluster, and “management” is their common and the most distinct topic. Because the journals belonged to this cluster are almost same to those in the MIS clusters generated by the previous studies, we considered it as the MIS cluster in this study. In the second experiment, we used the classification and regression tree (CART technique to predict assignment of subject category with that the journals in the original subject category Management and in the MIS cluster produced in this study as positive examples, respectively. The trees generated by the two tests both used the occurring probabilities of the topic “management” as the main classification rule. However, in the latter test, we did not only obtain a simpler classification tree but also had a result with less predicting errors. This means that if all journals in the MIS cluster could be given with subject category Management, the retrieval results can be more effective and complete.

  14. Full-Wave Analysis of the Shielding Effectiveness of Thin Graphene Sheets with the 3D Unidirectionally Collocated HIE-FDTD Method

    Directory of Open Access Journals (Sweden)

    Arne Van Londersele

    2017-01-01

    Full Text Available Graphene-based electrical components are inherently multiscale, which poses a real challenge for finite-difference time-domain (FDTD solvers due to the stringent time step upper bound. Here, a unidirectionally collocated hybrid implicit-explicit (UCHIE FDTD method is put forward that exploits the planar structure of graphene to increase the time step by implicitizing the critical dimension. The method replaces the traditional Yee discretization by a partially collocated scheme that allows a more accurate numerical description of the material boundaries. Moreover, the UCHIE-FDTD method preserves second-order accuracy even for nonuniform discretization in the direction of collocation. The auxiliary differential equation (ADE approach is used to implement the graphene sheet as a dispersive Drude medium. The finite grid is terminated by a uniaxial perfectly matched layer (UPML to permit open-space simulations. Special care is taken to elaborate on the efficient implementation of the implicit update equations. The UCHIE-FDTD method is validated by computing the shielding effectiveness of a typical graphene sheet.

  15. Research design: qualitative, quantitative and mixed methods approaches Research design: qualitative, quantitative and mixed methods approaches Creswell John W Sage 320 £29 0761924426 0761924426 [Formula: see text].

    Science.gov (United States)

    2004-09-01

    The second edition of Creswell's book has been significantly revised and updated. The author clearly sets out three approaches to research: quantitative, qualitative and mixed methods. As someone who has used mixed methods in my research, it is refreshing to read a textbook that addresses this. The differences between the approaches are clearly identified and a rationale for using each methodological stance provided.

  16. CRITICAL ASSESSMENT OF CONTRIBUTION FROM INDIAN PUBLICATIONS: THE ROLE OF IN SILICO DESIGNING METHODS LEADING TO DRUGS OR DRUG-LIKE COMPOUNDS USING TEXT BASED MINING AND ASSOCIATION

    Directory of Open Access Journals (Sweden)

    Pawan Kumar

    2017-09-01

    Full Text Available Over the several decades, India is constantly challenged by communicable and non-communicable diseases which are originated either by poor lifestyle or by environmental factors. The pools of diseases are constantly posing serious threats to mankind especially among the poverty-stricken families. Scientific communities across the globe are working continuously to design drug molecules to overcome the burden of these life threaten diseases. In last three decades, many computational algorithms and tools have been developed to identify potential drug targets and their inhibitors. It is believed that computational techniques have reduced the time and money required to develop an inhibitor into drug. However, applicability and deliverability of these in silico techniques in rational drug designing are not fully evaluated. In the present study, PubMed/Medline extracted data driven analysis has been performed to highlight the influence and progress of the theoretical methods in the field of drug discovery across India and compared with the world. Drug discovery related keyword dictionary has been built and utilized to select only drug discovery related PubMed abstract. A second keyword set (related to bioinformatics tools is used for normalized pointwise mutual information (PMI based association analysis. Observations show that drug discovery has been an interdisciplinary research and used many tools starting with QSAR, docking, pharmacophore, Molecular Simulations etc. The publications contributed from India (2% are similar as compared to the contribution in total world publications, suggesting large scope in future. Data coverage as represented since 1990-2015 in PubMed as indicated by number of publications associated with drug discovery is almost same in world and India (~75%. Emerging institutes/Universities are contributing since last 10 years as observed from Indian publication list. However, this method has many limitations as discussed.

  17. The use of weekly text messaging over 6 months was a feasible method for monitoring the clinical course of low back pain in patients seeking chiropractic care

    DEFF Research Database (Denmark)

    Axen, I.; Bodin, L.; Bergstrom, G.

    2012-01-01

    Objective: This study critically evaluates a new method of collecting frequent data using mobile phones and text messages. Fluctuating conditions such as low back pain (LBP) need frequent monitoring to describe the clinical course in detail and to account for individual and subgroup variations....... Study Design and Setting: In this multicentre prospective observational study, 262 subjects with nonspecific LBP were followed with weekly text messages for 6 months, with the question "How many days this previous week has your low back pain been bothersome?" The text replies were instantly recorded...... in a data file to be merged with baseline and follow up data (age, gender, pain intensity, duration, and self- rated health) collected through ordinary questionnaires. The response rate, user-friendliness, and compliance of this method were evaluated. Results: The mean response rate for the text messages...

  18. Identifying issue frames in text.

    Directory of Open Access Journals (Sweden)

    Eyal Sagi

    Full Text Available Framing, the effect of context on cognitive processes, is a prominent topic of research in psychology and public opinion research. Research on framing has traditionally relied on controlled experiments and manually annotated document collections. In this paper we present a method that allows for quantifying the relative strengths of competing linguistic frames based on corpus analysis. This method requires little human intervention and can therefore be efficiently applied to large bodies of text. We demonstrate its effectiveness by tracking changes in the framing of terror over time and comparing the framing of abortion by Democrats and Republicans in the U.S.

  19. Exploratory analysis of textual data from the Mother and Child Handbook using the text-mining method: Relationships with maternal traits and post-partum depression.

    Science.gov (United States)

    Matsuda, Yoshio; Manaka, Tomoko; Kobayashi, Makiko; Sato, Shuhei; Ohwada, Michitaka

    2016-06-01

    The aim of the present study was to examine the possibility of screening apprehensive pregnant women and mothers at risk for post-partum depression from an analysis of the textual data in the Mother and Child Handbook by using the text-mining method. Uncomplicated pregnant women (n = 58) were divided into two groups according to State-Trait Anxiety Inventory grade (high trait [group I, n = 21] and low trait [group II, n = 37]) or Edinburgh Postnatal Depression Scale score (high score [group III, n = 15] and low score [group IV, n = 43]). An exploratory analysis of the textual data from the Maternal and Child Handbook was conducted using the text-mining method with the Word Miner software program. A comparison of the 'structure elements' was made between the two groups. The number of structure elements extracted by separated words from text data was 20 004 and the number of structure elements with a threshold of 2 or more as an initial value was 1168. Fifteen key words related to maternal anxiety, and six key words related to post-partum depression were extracted. The text-mining method is useful for the exploratory analysis of textual data obtained from pregnant woman, and this screening method has been suggested to be useful for apprehensive pregnant women and mothers at risk for post-partum depression. © 2016 Japan Society of Obstetrics and Gynecology.

  20. Eliciting extra prominence in read-speech tasks: The effects of different text-highlighting methods on acoustic cues to perceived prominence

    DEFF Research Database (Denmark)

    Berger, Stephanie; Niebuhr, Oliver; Fischer, Kerstin

    2018-01-01

    The research initiative Innovating Speech EliCitation Techniques (INSPECT) aims to describe and quantify how recording methods, situations and materials influence speech produc-tion in lab-speech experiments. On this basis, INSPECT aims to develop methods that reliably stimulate specific patterns...... and styles of speech, like expressive or conversational speech or different types emphatic accents. The present study investigates if and how different text highlighting methods (yellow background, bold, capital letter, italics, and underlining) make speakers reinforce the level of perceived prominence...

  1. SparkText: Biomedical Text Mining on Big Data Framework.

    Directory of Open Access Journals (Sweden)

    Zhan Ye

    Full Text Available Many new biomedical research articles are published every day, accumulating rich information, such as genetic variants, genes, diseases, and treatments. Rapid yet accurate text mining on large-scale scientific literature can discover novel knowledge to better understand human diseases and to improve the quality of disease diagnosis, prevention, and treatment.In this study, we designed and developed an efficient text mining framework called SparkText on a Big Data infrastructure, which is composed of Apache Spark data streaming and machine learning methods, combined with a Cassandra NoSQL database. To demonstrate its performance for classifying cancer types, we extracted information (e.g., breast, prostate, and lung cancers from tens of thousands of articles downloaded from PubMed, and then employed Naïve Bayes, Support Vector Machine (SVM, and Logistic Regression to build prediction models to mine the articles. The accuracy of predicting a cancer type by SVM using the 29,437 full-text articles was 93.81%. While competing text-mining tools took more than 11 hours, SparkText mined the dataset in approximately 6 minutes.This study demonstrates the potential for mining large-scale scientific articles on a Big Data infrastructure, with real-time update from new articles published daily. SparkText can be extended to other areas of biomedical research.

  2. Abstracts to be Delivered at the 2014 Annual Conference of the Association of Medical Microbiology and Infectious Disease Canada, April 3 to 5, Victoria, British Columbia, Alphabetized According to the Surname of the First Author. Full-text Abstracts Can be Accessed at www.pulsus.com

    Directory of Open Access Journals (Sweden)

    2014-01-01

    Full Text Available This document presents the titles of the abstracts to be presented at the 2014 Annual Conference of the Association of Medical Microbiology and Infectious Disease Canada (April 3 to 5, Victoria, British Columbia. The full-text abstracts are available online.

  3. Context and Structure in Automated Full-Text Information Access

    Science.gov (United States)

    1994-04-29

    Meisei, Makayo, Nitsuko and Tamura, all of Japan; Goldstar, Samsung and OPC of South Korea, and Sun Moon Star of Taiwan; AT&T says the practices have...IN MALAYSIA [ ... ] Another example topic description is shown below: Topic 034 <dom> Domain: Science and Technology <title>Topic: Entities Involved In

  4. HighWire Free Online Full-text Articles

    Science.gov (United States)

    Journal of Lipid Research all articles after 12 months Journal of Medical Ethics all articles 1 Jan 1975 Anticancer Research all articles after 2 years every Jan. Antimicrobial Agents and Chemotherapy all articles BMJ Open Diabetes Research & Care free site BMJ Open Gastroenterology free site BMJ Open

  5. Identification of wastewater treatment processes for nutrient removal on a full-scale WWTP by statistical methods

    DEFF Research Database (Denmark)

    Carstensen, Jakob; Madsen, Henrik; Poulsen, Niels Kjølstad

    1994-01-01

    of the processes, i.e. including prior knowledge, with the significant effects found in data by using statistical identification methods. Rates of the biochemical and hydraulic processes are identified by statistical methods and the related constants for the biochemical processes are estimated assuming Monod...... kinetics. The models only include those hydraulic and kinetic parameters, which have shown to be significant in a statistical sense, and hence they can be quantified. The application potential of these models is on-line control, because the present state of the plant is given by the variables of the models......The introduction of on-line sensors of nutrient salt concentrations on wastewater treatment plants opens a wide new area of modelling wastewater processes. Time series models of these processes are very useful for gaining insight in real time operation of wastewater treatment systems which deal...

  6. A Dissipation Gap Method for full-field measurement-based identification of elasto-plastic material parameters

    KAUST Repository

    Blaysat, Benoît

    2012-05-18

    Using enriched data such as displacement fields obtained from digital image correlation is a pathway to the local identification of material parameters. Up to now, most of the identification techniques for nonlinear models are based on Finite Element Updating Methods. This article explains how an appropriate use of the Dissipation Gap Method can help in this context and be an interesting alternative to these classical techniques. The Dissipation Gap Methods rely on the concept of error in dissipation that has been used mainly for the verification of finite element simulations. We provide here an original application of these founding developments to the identification of material parameters for nonlinear behaviors. The proposed technique and especially the main technical keypoint of building the admissible fields are described in detail. The approach is then illustrated through the identification of heterogeneous isotropic elasto-plastic properties. The basic numerical features highlighted through these simple examples demonstrate this approach to be a promising tool for nonlinear identification. © 2012 John Wiley & Sons, Ltd.

  7. Full nonlinear treatment of the global thermospheric wind system. Part 1: Mathematical method and analysis of forces

    Science.gov (United States)

    Blum, P. W.; Harris, I.

    1973-01-01

    The equations of horizontal motion of the neutral atmosphere between 120 and 500 km are integrated with the inclusion of all the nonlinear terms of the convective derivative and the viscous forces due to vertical and horizontal velocity gradients. Empirical models of the distribution of neutral and charged particles are assumed to be known. The model of velocities developed is a steady state model. In part 1 the mathematical method used in the integration of the Navier-Stokes equations is described and the various forces are analysed.

  8. Application of Monte Carlo method in determination of air absorbed rate from a full γ-ray spectrum

    International Nuclear Information System (INIS)

    Zhang Jiangyun; Huang Ning; Tang Lili; Liu Yanfang; Zhang Guanghua

    2011-01-01

    The dosimetric properties of a gamma-radiation field can be measured by a dose-rate meter or by a gamma-spectrometer with spectrum-dose conversion. One of the spectrum dose conversion methods is to evaluate the radiation dose directly from integrating the observed pulse height spectrum weighted by a G(E) function, instead of making spectrum analysis.In this paper,energy spectra of 11 single energy point sources in 0.1-2.5 MeV are simulated by using Monte Carlo software MCNP5 for NaI(Tl) detectors of Φ 75 mm x 75 mm, Φ 50 mm x 50 mm and Φ 25 mm x 25 mm. The energy spectra are used as standard spectrum to calculate the G(E) value, so as to calculate corresponding doses. Comparing the results with theoretical value,the error is less than 1.5%. Finally, the G(E)-based γ dose rate of radiation field agreed well (within 5%) with the dose rate measured by a dosimeter. (authors)

  9. Full-Wave Analysis of Field-to-Line Coupling Effects Using 1D FDTD Method under Exciting Source with Different Bandwidths

    Directory of Open Access Journals (Sweden)

    Qi Zhang

    2014-01-01

    Full Text Available With the aim to analyze field-to-line coupling effects based on energy spectrum, parallel finite-difference time-domain (FDTD method is applied to calculate the induced voltage on overhead lines under high-power electromagnetic (HPEM environment. Firstly, the energy distribution laws of HEMP (IEC 61000-2-9, HEMP (Bell Laboratory, HEMP (Paulino et al., 2010, and LEMP (IEC61000-4-5 are given. Due to the air-earth stratified medium, both the absorbing boundary and the connecting boundary applied to scattering by finite-length objects are separately set in aerial and underground parts. Moreover, the influence of line length on induced voltage is analyzed and discussed. The results indicate that the half-peak width is wider with the increase of the line length. But the steepness of induced voltage on the overhead line is invariable. There is no further increase in the peak of induced voltage especially when the line length increases to be equivalent to the wavelength of the frequency bands with the maximum energy.

  10. Multidimensional structured data visualization method and apparatus, text visualization method and apparatus, method and apparatus for visualizing and graphically navigating the world wide web, method and apparatus for visualizing hierarchies

    Science.gov (United States)

    Risch, John S [Kennewick, WA; Dowson, Scott T [West Richland, WA; Hart, Michelle L [Richland, WA; Hatley, Wes L [Kennewick, WA

    2008-05-13

    A method of displaying correlations among information objects comprises receiving a query against a database; obtaining a query result set; and generating a visualization representing the components of the result set, the visualization including one of a plane and line to represent a data field, nodes representing data values, and links showing correlations among fields and values. Other visualization methods and apparatus are disclosed.

  11. Plagiarism in Academic Texts

    Directory of Open Access Journals (Sweden)

    Marta Eugenia Rojas-Porras

    2012-08-01

    Full Text Available The ethical and social responsibility of citing the sources in a scientific or artistic work is undeniable. This paper explores, in a preliminary way, academic plagiarism in its various forms. It includes findings based on a forensic analysis. The purpose of this paper is to raise awareness on the importance of considering these details when writing and publishing a text. Hopefully, this analysis may put the issue under discussion.

  12. Vocabulary Constraint on Texts

    Directory of Open Access Journals (Sweden)

    C. Sutarsyah

    2008-01-01

    Full Text Available This case study was carried out in the English Education Department of State University of Malang. The aim of the study was to identify and describe the vocabulary in the reading text and to seek if the text is useful for reading skill development. A descriptive qualitative design was applied to obtain the data. For this purpose, some available computer programs were used to find the description of vocabulary in the texts. It was found that the 20 texts containing 7,945 words are dominated by low frequency words which account for 16.97% of the words in the texts. The high frequency words occurring in the texts were dominated by function words. In the case of word levels, it was found that the texts have very limited number of words from GSL (General Service List of English Words (West, 1953. The proportion of the first 1,000 words of GSL only accounts for 44.6%. The data also show that the texts contain too large proportion of words which are not in the three levels (the first 2,000 and UWL. These words account for 26.44% of the running words in the texts.  It is believed that the constraints are due to the selection of the texts which are made of a series of short-unrelated texts. This kind of text is subject to the accumulation of low frequency words especially those of content words and limited of words from GSL. It could also defeat the development of students' reading skills and vocabulary enrichment.

  13. A Simplified Method for Three-Dimensional (3-D Ovarian Tissue Culture Yielding Oocytes Competent to Produce Full-Term Offspring in Mice.

    Directory of Open Access Journals (Sweden)

    Carolyn M Higuchi

    Full Text Available In vitro growth of follicles is a promising technology to generate large quantities of competent oocytes from immature follicles and could expand the potential of assisted reproductive technologies (ART. Isolated follicle culture is currently the primary method used to develop and mature follicles in vitro. However, this procedure typically requires complicated, time-consuming procedures, as well as destruction of the normal ovarian microenvironment. Here we describe a simplified 3-D ovarian culture system that can be used to mature multilayered secondary follicles into antral follicles, generating developmentally competent oocytes in vitro. Ovaries recovered from mice at 14 days of age were cut into 8 pieces and placed onto a thick Matrigel drop (3-D culture for 10 days of culture. As a control, ovarian pieces were cultured on a membrane filter without any Matrigel drop (Membrane culture. We also evaluated the effect of activin A treatment on follicle growth within the ovarian pieces with or without Matrigel support. Thus we tested four different culture conditions: C (Membrane/activin-, A (Membrane/activin+, M (Matrigel/activin-, and M+A (Matrigel/activin+. We found that the cultured follicles and oocytes steadily increased in size regardless of the culture condition used. However, antral cavity formation occurred only in the follicles grown in the 3-D culture system (M, M+A. Following ovarian tissue culture, full-grown GV oocytes were isolated from the larger follicles to evaluate their developmental competence by subjecting them to in vitro maturation (IVM and in vitro fertilization (IVF. Maturation and fertilization rates were higher using oocytes grown in 3-D culture (M, M+A than with those grown in membrane culture (C, A. In particular, activin A treatment further improved 3-D culture (M+A success. Following IVF, two-cell embryos were transferred to recipients to generate full-term offspring. In summary, this simple and easy 3-D ovarian

  14. SparkText: Biomedical Text Mining on Big Data Framework

    Science.gov (United States)

    He, Karen Y.; Wang, Kai

    2016-01-01

    Background Many new biomedical research articles are published every day, accumulating rich information, such as genetic variants, genes, diseases, and treatments. Rapid yet accurate text mining on large-scale scientific literature can discover novel knowledge to better understand human diseases and to improve the quality of disease diagnosis, prevention, and treatment. Results In this study, we designed and developed an efficient text mining framework called SparkText on a Big Data infrastructure, which is composed of Apache Spark data streaming and machine learning methods, combined with a Cassandra NoSQL database. To demonstrate its performance for classifying cancer types, we extracted information (e.g., breast, prostate, and lung cancers) from tens of thousands of articles downloaded from PubMed, and then employed Naïve Bayes, Support Vector Machine (SVM), and Logistic Regression to build prediction models to mine the articles. The accuracy of predicting a cancer type by SVM using the 29,437 full-text articles was 93.81%. While competing text-mining tools took more than 11 hours, SparkText mined the dataset in approximately 6 minutes. Conclusions This study demonstrates the potential for mining large-scale scientific articles on a Big Data infrastructure, with real-time update from new articles published daily. SparkText can be extended to other areas of biomedical research. PMID:27685652

  15. SparkText: Biomedical Text Mining on Big Data Framework.

    Science.gov (United States)

    Ye, Zhan; Tafti, Ahmad P; He, Karen Y; Wang, Kai; He, Max M

    Many new biomedical research articles are published every day, accumulating rich information, such as genetic variants, genes, diseases, and treatments. Rapid yet accurate text mining on large-scale scientific literature can discover novel knowledge to better understand human diseases and to improve the quality of disease diagnosis, prevention, and treatment. In this study, we designed and developed an efficient text mining framework called SparkText on a Big Data infrastructure, which is composed of Apache Spark data streaming and machine learning methods, combined with a Cassandra NoSQL database. To demonstrate its performance for classifying cancer types, we extracted information (e.g., breast, prostate, and lung cancers) from tens of thousands of articles downloaded from PubMed, and then employed Naïve Bayes, Support Vector Machine (SVM), and Logistic Regression to build prediction models to mine the articles. The accuracy of predicting a cancer type by SVM using the 29,437 full-text articles was 93.81%. While competing text-mining tools took more than 11 hours, SparkText mined the dataset in approximately 6 minutes. This study demonstrates the potential for mining large-scale scientific articles on a Big Data infrastructure, with real-time update from new articles published daily. SparkText can be extended to other areas of biomedical research.

  16. Exploratory analysis of textual data from the Mother and Child Handbook using a text mining method (II): Monthly changes in the words recorded by mothers.

    Science.gov (United States)

    Tagawa, Miki; Matsuda, Yoshio; Manaka, Tomoko; Kobayashi, Makiko; Ohwada, Michitaka; Matsubara, Shigeki

    2017-01-01

    The aim of the study was to examine the possibility of converting subjective textual data written in the free column space of the Mother and Child Handbook (MCH) into objective information using text mining and to compare any monthly changes in the words written by the mothers. Pregnant women without complications (n = 60) were divided into two groups according to State-Trait Anxiety Inventory grade: low trait anxiety (group I, n = 39) and high trait anxiety (group II, n = 21). Exploratory analysis of the textual data from the MCH was conducted by text mining using the Word Miner software program. Using 1203 structural elements extracted after processing, a comparison of monthly changes in the words used in the mothers' comments was made between the two groups. The data was mainly analyzed by a correspondence analysis. The structural elements in groups I and II were divided into seven and six clusters, respectively, by cluster analysis. Correspondence analysis revealed clear monthly changes in the words used in the mothers' comments as the pregnancy progressed in group I, whereas the association was not clear in group II. The text mining method was useful for exploratory analysis of the textual data obtained from pregnant women, and the monthly change in the words used in the mothers' comments as pregnancy progressed differed according to their degree of unease. © 2016 Japan Society of Obstetrics and Gynecology.

  17. Characterization of full set material constants of piezoelectric materials based on ultrasonic method and inverse impedance spectroscopy using only one sample.

    Science.gov (United States)

    Li, Shiyang; Zheng, Limei; Jiang, Wenhua; Sahul, Raffi; Gopalan, Venkatraman; Cao, Wenwu

    2013-09-14

    The most difficult task in the characterization of complete set material properties for piezoelectric materials is self-consistency. Because there are many independent elastic, dielectric, and piezoelectric constants, several samples are needed to obtain the full set constants. Property variation from sample to sample often makes the obtained data set lack of self-consistency. Here, we present a method, based on pulse-echo ultrasound and inverse impedance spectroscopy, to precisely determine the full set physical properties of piezoelectric materials using only one small sample, which eliminated the sample to sample variation problem to guarantee self-consistency. The method has been applied to characterize the [001] C poled Mn modified 0.27Pb(In 1/2 Nb 1/2 )O 3 -0.46Pb(Mg 1/3 Nb 2/3 )O 3 -0.27PbTiO 3 single crystal and the validity of the measured data is confirmed by a previously established method. For the inverse calculations using impedance spectrum, the stability of reconstructed results is analyzed by fluctuation analysis of input data. In contrast to conventional regression methods, our method here takes the full advantage of both ultrasonic and inverse impedance spectroscopy methods to extract all constants from only one small sample. The method provides a powerful tool for assisting novel piezoelectric materials of small size and for generating needed input data sets for device designs using finite element simulations.

  18. A Method of Estimating Pressure and Intensity Distributions of Multielement Phased Array High Intensity Focused Ultrasonic Field at Full Power Using a Needle Hydrophone

    International Nuclear Information System (INIS)

    Yu Ying; Shen Guofeng; Bai Jingfeng; Chen Yazhu

    2011-01-01

    The pressure and intensity distribution of high intensity focused ultrasound (HIFU) fields at full power are critical for predicting heating patterns and ensuring safety of the therapy. With the limitations of maximum pressure at the hydrophone and damage from cavitation or thermal effects, it is hard to measure pressure and intensity directly when HIFU is at full power. HIFU-phased arrays are usually composed of large numbers of small elements and the sound power radiated from some of them at full power is measureable using a hydrophone, we grouped them based on the limitation of maximum permissible pressure at the hydrophone and the characteristics of the element arrangement in the array. Then sound field measurement of the group was carried out at full power level. Using the acoustic coherence principle, the pressure and intensity distribution of the array at full power level can be calculated from corresponding values from the groups. With this method, computer simulations and sound field measurement of a 65-element concentric distributed phased array was carried out. The simulation results demonstrate theoretically the feasibility of this method. Measurements on the 65-element phased array also verify the effectiveness of this method for estimating the pressure and intensity distribution of phased array at full power level using a needle hydrophone.

  19. Speeding up the Raster Scanning Methods used in theX-Ray Fluorescence Imaging of the Ancient Greek Text of Archimedes

    Energy Technology Data Exchange (ETDEWEB)

    Turner, Manisha; /Norfolk State U.

    2006-08-24

    Progress has been made at the Stanford Linear Accelerator Center (SLAC) toward deciphering the remaining 10-20% of ancient Greek text contained in the Archimedes palimpsest. The text is known to contain valuable works by the mathematician, including the ''Method of Mechanical Theorems, the Equilibrium of Planes, On Floating Bodies'', and several diagrams as well. The only surviving copy of the text was recycled into a prayer book in the Middle Ages. The ink used to write on the goat skin parchment is partly composed of iron, which is visible by x-ray radiation. To image the palimpsest pages, the parchment is framed and placed in a stage that moves according to the raster method. When an x-ray beam strikes the parchment, the iron in the ink is detected by a germanium detector. The resulting signal is converted to a gray-scale image on the imaging program, Rasplot. It is extremely important that each line of data is perfectly aligned with the line that came before it because the image is scanned in two directions. The objectives of this experiment were to determine the best parameters for producing well-aligned images and to reduce the scanning time. Imaging half a page of parchment during previous beam time for this project was achieved in thirty hours. Equations were produced to evaluate count time, shutter time, and the number of pixels in this experiment. On Beamline 6-2 at the Stanford Synchrotron Radiation Laboratory (SSRL), actual scanning time was reduced by one fourth. The remaining pages were successfully imaged and sent to ancient Greek experts for translation.

  20. Speeding up the Raster Scanning Methods used in the X-Ray Fluorescence Imaging of the Ancient Greek Text of Archimedes

    International Nuclear Information System (INIS)

    Turner, Manisha; Norfolk State U.

    2006-01-01

    Progress has been made at the Stanford Linear Accelerator Center (SLAC) toward deciphering the remaining 10-20% of ancient Greek text contained in the Archimedes palimpsest. The text is known to contain valuable works by the mathematician, including the ''Method of Mechanical Theorems, the Equilibrium of Planes, On Floating Bodies'', and several diagrams as well. The only surviving copy of the text was recycled into a prayer book in the Middle Ages. The ink used to write on the goat skin parchment is partly composed of iron, which is visible by x-ray radiation. To image the palimpsest pages, the parchment is framed and placed in a stage that moves according to the raster method. When an x-ray beam strikes the parchment, the iron in the ink is detected by a germanium detector. The resulting signal is converted to a gray-scale image on the imaging program, Rasplot. It is extremely important that each line of data is perfectly aligned with the line that came before it because the image is scanned in two directions. The objectives of this experiment were to determine the best parameters for producing well-aligned images and to reduce the scanning time. Imaging half a page of parchment during previous beam time for this project was achieved in thirty hours. Equations were produced to evaluate count time, shutter time, and the number of pixels in this experiment. On Beamline 6-2 at the Stanford Synchrotron Radiation Laboratory (SSRL), actual scanning time was reduced by one fourth. The remaining pages were successfully imaged and sent to ancient Greek experts for translation

  1. Text segmentation in degraded historical document images

    Directory of Open Access Journals (Sweden)

    A.S. Kavitha

    2016-07-01

    Full Text Available Text segmentation from degraded Historical Indus script images helps Optical Character Recognizer (OCR to achieve good recognition rates for Hindus scripts; however, it is challenging due to complex background in such images. In this paper, we present a new method for segmenting text and non-text in Indus documents based on the fact that text components are less cursive compared to non-text ones. To achieve this, we propose a new combination of Sobel and Laplacian for enhancing degraded low contrast pixels. Then the proposed method generates skeletons for text components in enhanced images to reduce computational burdens, which in turn helps in studying component structures efficiently. We propose to study the cursiveness of components based on branch information to remove false text components. The proposed method introduces the nearest neighbor criterion for grouping components in the same line, which results in clusters. Furthermore, the proposed method classifies these clusters into text and non-text cluster based on characteristics of text components. We evaluate the proposed method on a large dataset containing varieties of images. The results are compared with the existing methods to show that the proposed method is effective in terms of recall and precision.

  2. Flexible frontiers for text division into rows

    Directory of Open Access Journals (Sweden)

    Dan L. Lacrămă

    2009-01-01

    Full Text Available This paper presents an original solution for flexible hand-written text division into rows. Unlike the standard procedure, the proposed method avoids the isolated characters extensions amputation and reduces the recognition error rate in the final stage.

  3. Ontology Assisted Formal Specification Extraction from Text

    Directory of Open Access Journals (Sweden)

    Andreea Mihis

    2010-12-01

    Full Text Available In the field of knowledge processing, the ontologies are the most important mean. They make possible for the computer to understand better the natural language and to make judgments. In this paper, a method which use ontologies in the semi-automatic extraction of formal specifications from a natural language text is proposed.

  4. Directed Activities Related to Text: Text Analysis and Text Reconstruction.

    Science.gov (United States)

    Davies, Florence; Greene, Terry

    This paper describes Directed Activities Related to Text (DART), procedures that were developed and are used in the Reading for Learning Project at the University of Nottingham (England) to enhance learning from texts and that fall into two broad categories: (1) text analysis procedures, which require students to engage in some form of analysis of…

  5. Effects of different surface-treatment methods on the bond strengths of resin cements to full-ceramic systems

    Directory of Open Access Journals (Sweden)

    Gülay Kansu

    2011-09-01

    Conclusions: The in vitro findings from this study indicate that surface-treatment procedures applied to the IPS Empress and the IPS Empress 2 full-ceramic systems are important when cement types are considered. In contrast, cement types and surface-treatment methods had no effect on changing the bond strength of the In-Ceram ceramic system.

  6. A fast and robust method for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2

    DEFF Research Database (Denmark)

    Kvisgaard, Lise Kirstine; Hjulsager, Charlotte Kristiane; Fahnøe, Ulrik

    2013-01-01

    . In the present study, fast and robust methods for long range RT-PCR amplification and subsequent next generation sequencing (NGS) were developed and validated on nine Type 1 and nine Type 2 PRRSV viruses. The methods generated robust and reliable sequences both on primary material and cell culture adapted...... viruses and the protocols performed well on all three NGS platforms tested (Roche 454 FLX, Illumina HiSeq2000, and Ion Torrent PGM™ Sequencer). These methods will greatly facilitate the generation of more full genome PRRSV sequences globally....

  7. Zum Bildungspotenzial biblischer Texte

    Directory of Open Access Journals (Sweden)

    Theis, Joachim

    2017-11-01

    Full Text Available Biblical education as a holistic process goes far beyond biblical learning. It must be understood as a lifelong process, in which both biblical texts and their understanders operate appropriating their counterpart in a dialogical way. – Neither does the recipient’s horizon of understanding appear as an empty room, which had to be filled with the text only, nor is the latter a dead material one could only examine cognitively. The recipient discovers the meaning of the biblical text recomposing it by existential appropriation. So the text is brought to live in each individual reality. Both scientific insights and subjective structures as well as the understanders’ community must be included to avoid potential one-sidednesses. Unfortunately, a special negative association obscures the approach of the bible very often: Still biblical work as part of religious education appears in a cognitively oriented habit, which is neither regarding the vitality and sovereignty of the biblical texts nor the students’ desire for meaning. Moreover, the bible is getting misused for teaching moral terms or pontifications. Such downfalls can be disrupted by biblical didactics which are empowerment didactics. Regarding the sovereignty of biblical texts, these didactics assist the understander with his/her individuation by opening the texts with focus on the understander’s otherness. Thus each the text and the recipient become subjects in a dialogue. The approach of the Biblical-Enabling-Didactics leads the Bible to become always new a book of life. Understanding them from within their hermeneutics, empowerment didactics could be raised to the principle of biblical didactics in general and grow into an essential element of holistic education.

  8. Library Users Expect Link Resolvers to Provide Full Text While Librarians Expect Accurate Results. A review of: Wakimoto, Jina Choi, David S. Walker, and Katherine S. Dabbour. “The Myths and Realities of SFX in Academic Libraries.” The Journal of Academic Librarianship 32.2 (Mar. 2006: 127‐ 36.

    Directory of Open Access Journals (Sweden)

    Wendy Furlan

    2006-12-01

    Full Text Available Objective – To determine how successfulthe link resolver, SFX, is in meeting the expectations of library users and librarians.Design – Analysis of an online user survey, library staff focus groups, retrospective analysis of system statistics, and test searches.Setting – Two California State University campus libraries in the United States: Northbridge, with over 31,000 students on campus, and San Marcos, with over 7,300 students on campus.Subjects – A total of 453 online survey responses were submitted from library users, 421 from Northbridge and 32 from SanMarcos. Twenty librarians took part in the focus groups conducted with library staff consisting of 14 of the 23 librarians from Northbridge (2 from technical services and 12 from public services, and 6 of the 10 San Marcos librarians (3 from technical services and 3 from public services. No further information was provided on the characteristics of the subjects.Methods – An online survey was offered to users of the two campus libraries for a two week period in May 2004. The survey consisted of 8 questions, 7 fixed response and 1 free text. Survey distribution was enabled via a different mechanism at each campus. The Northbridge library offered the survey to users via a pop‐up window each time the SFX service was clicked on, while the San Marcos library presented the survey as a link from the library’s home page. Survey responses from both campuses were combined and analysed together. Focus groups were conducted with librarians from each campus library on April 20th, 21st, and 29th, 2004. Librarians attended focus groups only with others from their own campus. Statistics were gathered from each campus’ local SFX system for the 3‐month period from September 14, 2004, to December 14,2004. Statistics from each campus were combined for analysis. The authors also conducted 224 test searches over the 3‐month period from July to September, 2004.Main results – Analysis of the

  9. The Implementation of Cooperative Integrated Reading and Composition (CIRC Method in Teaching Narrative Text to Improve Students’ Reading Comprehension at the Eleventh Grade Students of MAN 2 Model Makassar

    Directory of Open Access Journals (Sweden)

    Darmayanti Darmayanti

    2014-08-01

    Full Text Available This study is aimed to improve the reading comprehension of eleventh grade students at MAN 2 Model Makassar by using CIRC Method. CIRC Method is chosen to practice the communication in the target language. The research problems are: (1. Does the use of CIRC method improve reading comprehension of the eleventh grade students of MAN 2 Model Makassar? (2. Are the students interested in teaching Narrative text through CIRC method of the eleventh grade students of MAN 2 Model Makassar? The objectives of the research were (1 to find out whether or not the use of CIRC method can improve reading comprehension of the eleventh grade students of MAN 2 Model Makassar. (2 to find out the students’ interest toward teaching Narrative text through CIRC method. The research applied Quasi-experimental Design. The population of the research was the Eleventh Grade students of MAN 2 Model Makassar in academic year 2013/2014. The sample was IPS 2 as Experimental Group consisting of 33 students and IPA 2 as Control Group consisting of 37 students, with the total sample 70 students. The researcher used Cluster Random Sampling, two classes of the eleventh grade of MAN 2 Model Makassar were took as the experimental class and the control class. The experimental class taught by using CIRC Method while the control class taught by conventional learning method. The data were collected through reading tests namely Pre test and Post test, that were analyzed by using SPSS 20.0 version. The result of the data showed that there was significant difference between the students’ score who were taught CIRC method and non CIRC method. It proven by the mean score of the experimental group that was higher than control group in the post test. The result of the test indicated that using CIRC method significantly improved the students’ reading comprehension. Then, the questionnaires were analyzed by using Likert Scale that showed the students were interested in learning English

  10. An algorithm for full parametric solution of problems on the statics of orthotropic plates by the method of boundary states with perturbations

    Science.gov (United States)

    Penkov, V. B.; Ivanychev, D. A.; Novikova, O. S.; Levina, L. V.

    2018-03-01

    The article substantiates the possibility of building full parametric analytical solutions of mathematical physics problems in arbitrary regions by means of computer systems. The suggested effective means for such solutions is the method of boundary states with perturbations, which aptly incorporates all parameters of an orthotropic medium in a general solution. We performed check calculations of elastic fields of an anisotropic rectangular region (test and calculation problems) for a generalized plane stress state.

  11. Üstverinin Tam-Metin Bilgi Erişim Performansı Üzerindeki Etkisi: Küçük Ölçekli Türkçe Külliyat Üzerinde Deneysel Bir Araştırma / Impact of Metadata on Full-text Information Retrieval Performance: An Experimental Research on a Small Scale Turkish Corpus

    OpenAIRE

    Çapkın, Çağdaş

    2016-01-01

    Information institutions use text-based information retrieval systems to store, index and retrieve metadata, full-text, or both metadata and full-text (hybrid) contents. The aim of this research was to evaluate impact of these contents on information retrieval performance. For this purpose, metadata (MIR), full-text (FIR) and hybrid (HIR) content information retrieval systems were developed with default Lucene information retrieval model for a small scale Turkish corpus. In order to evaluate ...

  12. Volume-monitored chest CT: a simplified method for obtaining motion-free images near full inspiratory and end expiratory lung volumes

    Energy Technology Data Exchange (ETDEWEB)

    Mueller, Kathryn S. [The Ohio State University College of Medicine, Columbus, OH (United States); Long, Frederick R. [Nationwide Children' s Hospital, The Children' s Radiological Institute, Columbus, OH (United States); Flucke, Robert L. [Nationwide Children' s Hospital, Department of Pulmonary Medicine, Columbus, OH (United States); Castile, Robert G. [The Research Institute at Nationwide Children' s Hospital, Center for Perinatal Research, Columbus, OH (United States)

    2010-10-15

    Lung inflation and respiratory motion during chest CT affect diagnostic accuracy and reproducibility. To describe a simple volume-monitored (VM) method for performing reproducible, motion-free full inspiratory and end expiratory chest CT examinations in children. Fifty-two children with cystic fibrosis (mean age 8.8 {+-} 2.2 years) underwent pulmonary function tests and inspiratory and expiratory VM-CT scans (1.25-mm slices, 80-120 kVp, 16-40 mAs) according to an IRB-approved protocol. The VM-CT technique utilizes instruction from a respiratory therapist, a portable spirometer and real-time documentation of lung volume on a computer. CT image quality was evaluated for achievement of targeted lung-volume levels and for respiratory motion. Children achieved 95% of vital capacity during full inspiratory imaging. For end expiratory scans, 92% were at or below the child's end expiratory level. Two expiratory exams were judged to be at suboptimal volumes. Two inspiratory (4%) and three expiratory (6%) exams showed respiratory motion. Overall, 94% of scans were performed at optimal volumes without respiratory motion. The VM-CT technique is a simple, feasible method in children as young as 4 years to achieve reproducible high-quality full inspiratory and end expiratory lung CT images. (orig.)

  13. Text Maps: Helping Students Navigate Informational Texts.

    Science.gov (United States)

    Spencer, Brenda H.

    2003-01-01

    Notes that a text map is an instructional approach designed to help students gain fluency in reading content area materials. Discusses how the goal is to teach students about the important features of the material and how the maps can be used to build new understandings. Presents the procedures for preparing and using a text map. (SG)

  14. From Text to Political Positions: Text analysis across disciplines

    NARCIS (Netherlands)

    Kaal, A.R.; Maks, I.; van Elfrinkhof, A.M.E.

    2014-01-01

    ABSTRACT From Text to Political Positions addresses cross-disciplinary innovation in political text analysis for party positioning. Drawing on political science, computational methods and discourse analysis, it presents a diverse collection of analytical models including pure quantitative and

  15. Full coverage of perovskite layer onto ZnO nanorods via a modified sequential two-step deposition method for efficiency enhancement in perovskite solar cells

    Science.gov (United States)

    Ruankham, Pipat; Wongratanaphisan, Duangmanee; Gardchareon, Atcharawon; Phadungdhitidhada, Surachet; Choopun, Supab; Sagawa, Takashi

    2017-07-01

    Full coverage of perovskite layer onto ZnO nanorod substrates with less pinholes is crucial for achieving high-efficiency perovskite solar cells. In this work, a two-step sequential deposition method is modified to achieve an appropriate property of perovskite (MAPbI3) film. Surface treatment of perovskite layer and its precursor have been systematically performed and their morphologies have been investigated. By pre-wetting of lead iodide (PbI2) and letting it dry before reacting with methylammonium iodide (MAI) provide better coverage of perovskite film onto ZnO nanorod substrate than one without any treatment. An additional MAI deposition followed with toluene drop-casting technique on the perovskite film is also found to increase the coverage and enhance the transformation of PbI2 to MAPbI3. These lead to longer charge carrier lifetime, resulting in an enhanced power conversion efficiency (PCE) from 1.21% to 3.05%. The modified method could been applied to a complex ZnO nanorods/TiO2 nanoparticles substrate. The enhancement in PCE to 3.41% is observed. These imply that our introduced method provides a simple way to obtain the full coverage and better transformation to MAPbI3 phase for enhancement in performances of perovskite solar cells.

  16. Methods for Quantifying the Uncertainties of LSIT Test Parameters, Test Results, and Full-Scale Mixing Performance Using Models Developed from Scaled Test Data

    International Nuclear Information System (INIS)

    Piepel, Gregory F.; Cooley, Scott K.; Kuhn, William L.; Rector, David R.; Heredia-Langner, Alejandro

    2015-01-01

    This report discusses the statistical methods for quantifying uncertainties in 1) test responses and other parameters in the Large Scale Integrated Testing (LSIT), and 2) estimates of coefficients and predictions of mixing performance from models that relate test responses to test parameters. Testing at a larger scale has been committed to by Bechtel National, Inc. and the U.S. Department of Energy (DOE) to ''address uncertainties and increase confidence in the projected, full-scale mixing performance and operations'' in the Waste Treatment and Immobilization Plant (WTP).

  17. Methods for Quantifying the Uncertainties of LSIT Test Parameters, Test Results, and Full-Scale Mixing Performance Using Models Developed from Scaled Test Data

    Energy Technology Data Exchange (ETDEWEB)

    Piepel, Gregory F. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Cooley, Scott K. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Kuhn, William L. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Rector, David R. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Heredia-Langner, Alejandro [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2015-05-01

    This report discusses the statistical methods for quantifying uncertainties in 1) test responses and other parameters in the Large Scale Integrated Testing (LSIT), and 2) estimates of coefficients and predictions of mixing performance from models that relate test responses to test parameters. Testing at a larger scale has been committed to by Bechtel National, Inc. and the U.S. Department of Energy (DOE) to “address uncertainties and increase confidence in the projected, full-scale mixing performance and operations” in the Waste Treatment and Immobilization Plant (WTP).

  18. Isolation of full-length putative rat lysophospholipase cDNA using improved methods for mRNA isolation and cDNA cloning

    International Nuclear Information System (INIS)

    Han, J.H.; Stratowa, C.; Rutter, W.J.

    1987-01-01

    The authors have cloned a full-length putative rat pancreatic lysophospholipase cDNA by an improved mRNA isolation method and cDNA cloning strategy using [ 32 P]-labelled nucleotides. These new methods allow the construction of a cDNA library from the adult rat pancreas in which the majority of recombinant clones contained complete sequences for the corresponding mRNAs. A previously recognized but unidentified long and relatively rare cDNA clone containing the entire sequence from the cap site at the 5' end to the poly(A) tail at the 3' end of the mRNA was isolated by single-step screening of the library. The size, amino acid composition, and the activity of the protein expressed in heterologous cells strongly suggest this mRNA codes for lysophospholipase

  19. method

    Directory of Open Access Journals (Sweden)

    L. M. Kimball

    2002-01-01

    Full Text Available This paper presents an interior point algorithm to solve the multiperiod hydrothermal economic dispatch (HTED. The multiperiod HTED is a large scale nonlinear programming problem. Various optimization methods have been applied to the multiperiod HTED, but most neglect important network characteristics or require decomposition into thermal and hydro subproblems. The algorithm described here exploits the special bordered block diagonal structure and sparsity of the Newton system for the first order necessary conditions to result in a fast efficient algorithm that can account for all network aspects. Applying this new algorithm challenges a conventional method for the use of available hydro resources known as the peak shaving heuristic.

  20. Journalistic Text Production

    DEFF Research Database (Denmark)

    Haugaard, Rikke Hartmann

    , a multiple case study investigated three professional text producers’ practices as they unfolded in their natural setting at the Spanish newspaper, El Mundo. • Results indicate that journalists’ revisions are related to form markedly more often than to content. • Results suggest two writing phases serving...... at the Spanish newspaper, El Mundo, in Madrid. The study applied a combination of quantitative and qualitative methods, i.e. keystroke logging, participant observation and retrospective interview. Results indicate that journalists’ revisions are related to form markedly more often than to content (approx. three...

  1. A fixed full-matrix method for determining ice sheet height change from satellite altimeter: an ENVISAT case study in East Antarctica with backscatter analysis

    Science.gov (United States)

    Yang, Yuande; Hwang, Cheinway; E, Dongchen

    2014-09-01

    A new method, called the fixed full-matrix method (FFM), is used to compute height changes at crossovers of satellite altimeter ground tracks. Using the ENVISAT data in East Antarctica, FFM results in crossovers of altimeter heights that are 1.9 and 79 times more than those from the fixed half method (FHM) and the one-row method (ORM). The mean standard error of height changes is about 14 cm from ORM, which is reduced to 7 cm by FHM and to 3 cm by FFM. Unlike FHM, FFM leads to uniform errors in the first-half and second-half height-change time series. FFM has the advantage in improving the accuracy of the change of height and backscattered power over ORM and FHM. Assisted by the ICESat-derived height changes, we determine the optimal threshold correlation coefficient (TCC) for a best correction for the backscatter effect on ENVISAT height changes. The TCC value of 0.92 yields an optimal result for FFM. With this value, FFM yields ENVISAT-derived height change rates in East Antarctica mostly falling between and 3 cm/year, and matching the ICESat result to 0.94 cm/year. The ENVISAT result will provide a constraint on the current mass balance result along the Chinese expedition route CHINARE.

  2. Corpus-based critical discourse analysis as a method of exploring underlying ideologies and self-representation strategies in legal texts

    DEFF Research Database (Denmark)

    Potts, Amanda; Kjær, Anne Lise

    that legal language can be subjective and emotive. The semantic field of ‘crime’ is an expected key, but concordance analysis shows ideological skew in discursive construction of crimes/victims. For instance, ‘rape’/‘sexual assault’ co-occurs with female victims, whereas ‘torture’/‘outrages upon personal......Legal language is an integral and foundational party of our social reality, but it is underrepresented in interdisciplinary, critical linguistic analyses. This is perhaps because language is more objective and formulaic than media texts, which can be more subjective and emotive (Kjær and Palsbro......, 2008). In this paper, I demonstrate how a corpus-based critical discourse analysis of legal language can expose hidden traces of the underlying ideologies of text creators, while demonstrating how identity can be performed in legal texts. Research is based on a half-million-word corpus of annual...

  3. Weitere Texte physiognomischen Inhalts

    Directory of Open Access Journals (Sweden)

    Böck, Barbara

    2004-12-01

    Full Text Available The present article offers the edition of three cuneiform texts belonging to the Akkadian handbook of omens drawn from the physical appearance as well as the morals and behaviour of man. The book comprising up to 27 chapters with more than 100 omens each was entitled in antiquity Alamdimmû. The edition of the three cuneiform tablets completes, thus, the author's monographic study on the ancient Mesopotamian divinatory discipline of physiognomy (Die babylonisch-assyrische Morphoskopie (Wien 2000 [=AfO Beih. 27].

    En este artículo se presenta la editio princeps de tres textos cuneiformes conservados en el British Museum (Londres y el Vorderasiatisches Museum (Berlín, que pertenecen al libro asirio-babilonio de presagios fisiognómicos. Este libro, titulado originalmente Alamdimmû ('forma, figura', consta de 27 capítulos, cada uno con más de cien presagios escritos en lengua acadia. Los tres textos completan así el estudio monográfico de la autora sobre la disciplina adivinatoria de la fisiognomía en el antiguo Oriente (Die babylonisch-assyrische Morphoskopie (Wien 2000 [=AfO Beih. 27].

  4. Effects of Conjugate Gradient Methods and Step-Length Formulas on the Multiscale Full Waveform Inversion in Time Domain: Numerical Experiments

    Science.gov (United States)

    Liu, Youshan; Teng, Jiwen; Xu, Tao; Badal, José; Liu, Qinya; Zhou, Bing

    2017-05-01

    We carry out full waveform inversion (FWI) in time domain based on an alternative frequency-band selection strategy that allows us to implement the method with success. This strategy aims at decomposing the seismic data within partially overlapped frequency intervals by carrying out a concatenated treatment of the wavelet to largely avoid redundant frequency information to adapt to wavelength or wavenumber coverage. A pertinent numerical test proves the effectiveness of this strategy. Based on this strategy, we comparatively analyze the effects of update parameters for the nonlinear conjugate gradient (CG) method and step-length formulas on the multiscale FWI through several numerical tests. The investigations of up to eight versions of the nonlinear CG method with and without Gaussian white noise make clear that the HS (Hestenes and Stiefel in J Res Natl Bur Stand Sect 5:409-436, 1952), CD (Fletcher in Practical methods of optimization vol. 1: unconstrained optimization, Wiley, New York, 1987), and PRP (Polak and Ribière in Revue Francaise Informat Recherche Opertionelle, 3e Année 16:35-43, 1969; Polyak in USSR Comput Math Math Phys 9:94-112, 1969) versions are more efficient among the eight versions, while the DY (Dai and Yuan in SIAM J Optim 10:177-182, 1999) version always yields inaccurate result, because it overestimates the deeper parts of the model. The application of FWI algorithms using distinct step-length formulas, such as the direct method ( Direct), the parabolic search method ( Search), and the two-point quadratic interpolation method ( Interp), proves that the Interp is more efficient for noise-free data, while the Direct is more efficient for Gaussian white noise data. In contrast, the Search is less efficient because of its slow convergence. In general, the three step-length formulas are robust or partly insensitive to Gaussian white noise and the complexity of the model. When the initial velocity model deviates far from the real model or the

  5. Myocardial infarct sizing by late gadolinium-enhanced MRI: Comparison of manual, full-width at half-maximum, and n-standard deviation methods.

    Science.gov (United States)

    Zhang, Lin; Huttin, Olivier; Marie, Pierre-Yves; Felblinger, Jacques; Beaumont, Marine; Chillou, Christian DE; Girerd, Nicolas; Mandry, Damien

    2016-11-01

    To compare three widely used methods for myocardial infarct (MI) sizing on late gadolinium-enhanced (LGE) magnetic resonance (MR) images: manual delineation and two semiautomated techniques (full-width at half-maximum [FWHM] and n-standard deviation [SD]). 3T phase-sensitive inversion-recovery (PSIR) LGE images of 114 patients after an acute MI (2-4 days and 6 months) were analyzed by two independent observers to determine both total and core infarct sizes (TIS/CIS). Manual delineation served as the reference for determination of optimal thresholds for semiautomated methods after thresholding at multiple values. Reproducibility and accuracy were expressed as overall bias ± 95% limits of agreement. Mean infarct sizes by manual methods were 39.0%/24.4% for the acute MI group (TIS/CIS) and 29.7%/17.3% for the chronic MI group. The optimal thresholds (ie, providing the closest mean value to the manual method) were FWHM30% and 3SD for the TIS measurement and FWHM45% and 6SD for the CIS measurement (paired t-test; all P > 0.05). The best reproducibility was obtained using FWHM. For TIS measurement in the acute MI group, intra-/interobserver agreements, from Bland-Altman analysis, with FWHM30%, 3SD, and manual were -0.02 ± 7.74%/-0.74 ± 5.52%, 0.31 ± 9.78%/2.96 ± 16.62% and -2.12 ± 8.86%/0.18 ± 16.12, respectively; in the chronic MI group, the corresponding values were 0.23 ± 3.5%/-2.28 ± 15.06, -0.29 ± 10.46%/3.12 ± 13.06% and 1.68 ± 6.52%/-2.88 ± 9.62%, respectively. A similar trend for reproducibility was obtained for CIS measurement. However, semiautomated methods produced inconsistent results (variabilities of 24-46%) compared to manual delineation. The FWHM technique was the most reproducible method for infarct sizing both in acute and chronic MI. However, both FWHM and n-SD methods showed limited accuracy compared to manual delineation. J. Magn. Reson. Imaging 2016;44:1206-1217. © 2016 International Society for Magnetic Resonance in Medicine.

  6. Prediction of the heat gain of external walls: An innovative approach for full-featured excitations based on the simplified method of Mackey-and-Wright

    International Nuclear Information System (INIS)

    Ruivo, C.R.; Vaz, D.C.

    2015-01-01

    Highlights: • The transient thermal behaviour of external multilayer walls of buildings is studied. • Reference results for four representative walls, obtained with a numerical model, are provided. • Shortcomings of approaches based on the Mackey-and-Wright method are identified. • Handling full-feature excitations with Fourier series decomposition improves accuracy. • A simpler, yet accurate, promising novel approach to predict heat gain is proposed. - Abstract: Nowadays, simulation tools are available for calculating the thermal loads of multiple rooms of buildings, for given inputs. However, due to inaccuracies or uncertainties in some of the input data (e.g., thermal properties, air infiltrations flow rates, building occupancy), the evaluated thermal load may represent no more than just an estimate of the actual thermal load of the spaces. Accordingly, in certain practical situations, simplified methods may offer a more reasonable trade-off between effort and results accuracy than advanced software. Hence, despite the advances in computing power over the last decades, simplified methods for the evaluation of thermal loads are still of great interest nowadays, for both the practicing engineer and the graduating student, since these can be readily implemented or developed in common computational-tools, like a spreadsheet. The method of Mackey and Wright (M&W) is a simplified method that upon values of the decrement factor and time lag of a wall (or roof) estimates the instantaneous rate of heat transfer through its indoor surface. It assumes cyclic behaviour and shows good accuracy when the excitation and response have matching shapes, but it involves non negligible error otherwise, for example, in the case of walls of high thermal inertia. The aim of this study is to develop a simplified procedure that considerably improves the accuracy of the M&W method, particularly for excitations that noticeably depart from the sinusoidal shape, while not

  7. Pregnancy Prevention at Her Fingertips: A Text- and Mobile Video-Based Pilot Intervention to Promote Contraceptive Methods among College Women

    Science.gov (United States)

    Walsh-Buhi, Eric R.; Helmy, Hannah; Harsch, Kristin; Rella, Natalie; Godcharles, Cheryl; Ogunrunde, Adejoke; Lopez Castillo, Humberto

    2016-01-01

    Objective: This paper reports on a pilot study evaluating the feasibility and acceptability of a text- and mobile video-based intervention to educate women and men attending college about non-daily contraception, with a particular focus on long-acting reversible contraception (LARC). A secondary objective is to describe the process of intervention…

  8. Pragma- und textilinguistische Untersuchungsmethoden zur indirekten Rede im Englischen (Pragmatic and Text-Linguistic Research Methods on Indirect Discourse in English)

    Science.gov (United States)

    Ziegesar, Detlef von

    1976-01-01

    Examines the mechanisms involved in changing from direct to indirect discourse, taking as a starting point research findings in linguistic pragmatics, which involve the practical application of speech symbol use between speaker and hearer. (Text is in German.) (IFS/WGA)

  9. Extension of a dynamic headspace multi-volatile method to milliliter injection volumes with full sample evaporation: Application to green tea.

    Science.gov (United States)

    Ochiai, Nobuo; Sasamoto, Kikuo; Tsunokawa, Jun; Hoffmann, Andreas; Okanoya, Kazunori; MacNamara, Kevin

    2015-11-20

    An extension of multi-volatile method (MVM) technology using the combination of a standard dynamic headspace (DHS) configuration, and a modified DHS configuration incorporating an additional vacuum module, was developed for milliliter injection volume of aqueous sample with full sample evaporation. A prior step involved investigation of water management by weighing of the water residue in the adsorbent trap. The extended MVM for 1 mL aqueous sample consists of five different DHS method parameter sets including choice of the replaceable adsorbent trap. An initial two DHS sampling sets at 25°C with the standard DHS configuration using a carbon-based adsorbent trap target very volatile solutes with high vapor pressure (>10 kPa) and volatile solutes with moderate vapor pressure (1-10 kPa). Subsequent three DHS sampling sets at 80°C with the modified DHS configuration using a Tenax TA trap target solutes with low vapor pressure (88%) for 17 test aroma compounds and moderate recoveries (44-71%) for 4 test compounds. The method showed good linearity (r(2)>0.9913) and high sensitivity (limit of detection: 0.1-0.5 ng mL(-1)) even with MS scan mode. The improved sensitivity of the method was demonstrated with analysis of a wide variety of aroma compounds in brewed green tea. Compared to the original 100 μL MVM procedure, this extension to 1 mL MVM allowed detection of nearly twice the number of aroma compounds, including 18 potent aroma compounds from top-note to base-note (e.g. 2,3-butanedione, coumarin, furaneol, guaiacol, cis-3-hexenol, linalool, maltol, methional, 3-methyl butanal, 2,3,5-trimethyl pyrazine, and vanillin). Sensitivity for 23 compounds improved by a factor of 3.4-15 under 1 mL MVM conditions. Copyright © 2015 Elsevier B.V. All rights reserved.

  10. Text Character Extraction Implementation from Captured Handwritten Image to Text Conversionusing Template Matching Technique

    Directory of Open Access Journals (Sweden)

    Barate Seema

    2016-01-01

    Full Text Available Images contain various types of useful information that should be extracted whenever required. A various algorithms and methods are proposed to extract text from the given image, and by using that user will be able to access the text from any image. Variations in text may occur because of differences in size, style,orientation, alignment of text, and low image contrast, composite backgrounds make the problem during extraction of text. If we develop an application that extracts and recognizes those texts accurately in real time, then it can be applied to many important applications like document analysis, vehicle license plate extraction, text- based image indexing, etc and many applications have become realities in recent years. To overcome the above problems we develop such application that will convert the image into text by using algorithms, such as bounding box, HSV model, blob analysis,template matching, template generation.

  11. Short message service (SMS) texting as a method of communication during on call: prevalence and experience of medical staff in a large acute NHS Trust in the UK.

    Science.gov (United States)

    Matharu, J; Hale, B; Ammar, M; Brennan, P A

    2016-10-01

    With the widespread use of smartphones, text messaging has become an accepted form of communication for both social and professional use in medicine. To our knowledge no published studies have assessed the prevalence and use of short message service (SMS) texting by doctors on call. We have used an online questionnaire to seek information from doctors in a large NHS Trust in the UK about their use of texting while on call, what they use it for, and whether they send images relevant to patients' care. We received 302 responses (43% response rate), of whom 166 (55%) used SMS while on call. There was a significant association between SMS and age group (p=0.005), with the 20-30-year-old group using it much more than the other age groups. Doctors in the surgical specialties used it significantly less than those in other speciality groups (pcall was deemed to be safe and reliable (pcommunication to use when on call. Copyright © 2016 The British Association of Oral and Maxillofacial Surgeons. Published by Elsevier Ltd. All rights reserved.

  12. Extending the precision and efficiency of the all-electron full-potential linearized augmented plane-wave density-functional theory method

    International Nuclear Information System (INIS)

    Michalicek, Gregor

    2015-01-01

    Density functional theory (DFT) is the most widely-used first-principles theory for analyzing, describing and predicting the properties of solids based on the fundamental laws of quantum mechanics. The success of the theory is a consequence of powerful approximations to the unknown exchange and correlation energy of the interacting electrons and of sophisticated electronic structure methods that enable the computation of the density functional equations on a computer. A widely used electronic structure method is the full-potential linearized augmented plane-wave (FLAPW) method, that is considered to be one of the most precise methods of its kind and often referred to as a standard. Challenged by the demand of treating chemically and structurally increasingly more complex solids, in this thesis this method is revisited and extended along two different directions: (i) precision and (ii) efficiency. In the full-potential linearized augmented plane-wave method the space of a solid is partitioned into nearly touching spheres, centered at each atom, and the remaining interstitial region between the spheres. The Kohn-Sham orbitals, which are used to construct the electron density, the essential quantity in DFT, are expanded into a linearized augmented plane-wave basis, which consists of plane waves in the interstitial region and angular momentum dependent radial functions in the spheres. In this thesis it is shown that for certain types of materials, e.g., materials with very broad electron bands or large band gaps, or materials that allow the usage of large space-filling spheres, the variational freedom of the basis in the spheres has to be extended in order to represent the Kohn-Sham orbitals with high precision over a large energy spread. Two kinds of additional radial functions confined to the spheres, so-called local orbitals, are evaluated and found to successfully eliminate this error. A new efficient basis set is developed, named linearized augmented lattice

  13. Are Female Applicants Disadvantaged in National Institutes of Health Peer Review? Combining Algorithmic Text Mining and Qualitative Methods to Detect Evaluative Differences in R01 Reviewers' Critiques.

    Science.gov (United States)

    Magua, Wairimu; Zhu, Xiaojin; Bhattacharya, Anupama; Filut, Amarette; Potvien, Aaron; Leatherberry, Renee; Lee, You-Geon; Jens, Madeline; Malikireddy, Dastagiri; Carnes, Molly; Kaatz, Anna

    2017-05-01

    Women are less successful than men in renewing R01 grants from the National Institutes of Health. Continuing to probe text mining as a tool to identify gender bias in peer review, we used algorithmic text mining and qualitative analysis to examine a sample of critiques from men's and women's R01 renewal applications previously analyzed by counting and comparing word categories. We analyzed 241 critiques from 79 Summary Statements for 51 R01 renewals awarded to 45 investigators (64% male, 89% white, 80% PhD) at the University of Wisconsin-Madison between 2010 and 2014. We used latent Dirichlet allocation to discover evaluative "topics" (i.e., words that co-occur with high probability). We then qualitatively examined the context in which evaluative words occurred for male and female investigators. We also examined sex differences in assigned scores controlling for investigator productivity. Text analysis results showed that male investigators were described as "leaders" and "pioneers" in their "fields," with "highly innovative" and "highly significant research." By comparison, female investigators were characterized as having "expertise" and working in "excellent" environments. Applications from men received significantly better priority, approach, and significance scores, which could not be accounted for by differences in productivity. Results confirm our previous analyses suggesting that gender stereotypes operate in R01 grant peer review. Reviewers may more easily view male than female investigators as scientific leaders with significant and innovative research, and score their applications more competitively. Such implicit bias may contribute to sex differences in award rates for R01 renewals.

  14. Text-Fabric

    NARCIS (Netherlands)

    Roorda, Dirk

    2016-01-01

    Text-Fabric is a Python3 package for Text plus Annotations. It provides a data model, a text file format, and a binary format for (ancient) text plus (linguistic) annotations. The emphasis of this all is on: data processing; sharing data; and contributing modules. A defining characteristic is that

  15. Contextual Text Mining

    Science.gov (United States)

    Mei, Qiaozhu

    2009-01-01

    With the dramatic growth of text information, there is an increasing need for powerful text mining systems that can automatically discover useful knowledge from text. Text is generally associated with all kinds of contextual information. Those contexts can be explicit, such as the time and the location where a blog article is written, and the…

  16. XML and Free Text.

    Science.gov (United States)

    Riggs, Ken Roger

    2002-01-01

    Discusses problems with marking free text, text that is either natural language or semigrammatical but unstructured, that prevent well-formed XML from marking text for readily available meaning. Proposes a solution to mark meaning in free text that is consistent with the intended simplicity of XML versus SGML. (Author/LRW)

  17. Improving the Raster Scanning Methods used with X-ray Fluorescence to See the Ancient Greek Text of Archimedes (SULI Paper)

    Energy Technology Data Exchange (ETDEWEB)

    Griffin, Isabella B.; /Norfolk State U. /SLAC, SSRL

    2006-01-04

    X-ray fluorescence is being used to detect the ancient Greek copy of Archimedes work. The copy of Archimedes text was erased with a weak acid and written over to make a prayer book in the Middle Ages. The ancient parchment, made of goat skin, has on it some of Archimedes most valuable writings. The ink in the text contains iron which will fluoresce under x-ray radiation. My research project deals with the scanning and imaging process. The palimpsest is put in a stage that moves in a raster format. As the beam hits the parchment, a germanium detector detects the iron atoms and discriminates against other elements. Since the computer scans in both forwards and backwards directions, it is imperative that each row of data lines up exactly on top of the next row. There are several parameters to consider when scanning the parchment. These parameters include: speed, count time, shutter time, x-number of points, and acceleration. Formulas were made to relate these parameters together. During the actual beam time of this project, the scanning was very slow going; it took 30 hours to scan 1/2 of a page. Using the formulas, the scientists doubled distance and speed to scan the parchment faster; however, the grey scaled data was not lined up properly causing the images to look blurred. My project was is to find out why doubling the parameters caused blurred images, and to fix the problem if it is fixable.

  18. Plan-for-Gov[IT] - Planning for Governance of IT Method: use of the Techniques of "Text Retrieval" for mapping the expected support needs from IT Area to serve of the Corporation's Core-Business expectations

    Directory of Open Access Journals (Sweden)

    Altino José Mentzingen De Moraes

    2013-04-01

    Full Text Available The IT - Information Technology, in accordance with the philosophy of the IT Governance (and also as defined by Authors listed as follows requires its integration to the process of Strategic Planning of its Corporation, with the intention to align its actions with the Core-Business aiming at to reach the expected results by the IT Area. The question is how the IT can, under a methodological and direct way, to know how to interpret the expectations expressed by the Strategic Planning (a component of the Corporative Governance, in actions that are addressed to its Area in a practical manner and with an adequate tool kit related to the Frameworks (Models focused to the implementation of the IT Governance, for posterior creation of the necessary Effectiveness Indicators for monitoring about success level of the actions of IT in alignment with the Business. The result of this work is the proposal of the Text Retrieval and its subsequent validation (as a plausible resource for actual use to try to help the Governance of IT in its primary task of assisting the Corporation Core-Business, which was named as Plan-for- Gov[IT] - Planning for Governance of IT Method, which can be automated by the use of resources of "word finding" in Word Processors or in another software products with also this purpose.

  19. [The influence of the different polishing methods on the marginal sealing property of the computer aided design and computer aided manufacture zirconium dioxide full crown].

    Science.gov (United States)

    Zhou, Jianying; Deng, Jiupeng; Li, Jinyuan; Wang, Jide; Shen, Baolian

    2016-05-01

    To evaluate the influence of different polishing methods on marginal microleakage of zirconium dioxide full crown. Thirty extracted premolars were selected and randomly divided into three groups, A, B and C, with 10 in each group. Group A was prepared with MANI TF-13 bur completely without the treatment of shoulder. The shoulder of group B was polished with MANI TR13-EF bur after the preparation using MANI TF-13. The shoulder of group C was polished with the dental pneumatic ultrasonic hand-piece of KaVo SONICflex after the preparation using MANI TF-13 bur. Five specimens after preparation were selected in each group. Fifteen CAD/CAM zirconium dioxide full crowns have been made. The crowns were bonded using PULPDENT resin cement, and the root canals were sealed using nail polish, and apical foramen were closed using flow resin. The test-pieces have been immersed in a 3% solution of methylene blue for 24 h. The condition of shoulder marginal microleakage was observed using light stereomicroscopy and evaluated in classification index. The remaining specimens in each group were used for roughness test and scanning electron microscope(SEM) experiment. The marginal microleakage situations of specimens in three groups was analyzed by SPSS 17.0. The enamel surface of different polishing methods was observed using SEM. The specimens in group C demonstrated the least marginal microleakage, and those in group B showed an intermediate level of marginal microleakage, and those in group A characterized the most serious marginal microleakage (total, χ2=44.610, P<0.01; among the different groups, P<0.05). The roughness experiment showed that specimens in group C achieve the smoothest results ([0.27±0.03] μm). Preparation shoulder polished using the dental pneumatic ultrasonic hand-piece demonstrated the best result under the SEM among the three groups. The anti-microleakage effectiveness of dental pneumatic ultrasonic hand-piece in shoulder refinement is better than ordinary

  20. Figure-associated text summarization and evaluation.

    Directory of Open Access Journals (Sweden)

    Balaji Polepalli Ramesh

    Full Text Available Biomedical literature incorporates millions of figures, which are a rich and important knowledge resource for biomedical researchers. Scientists need access to the figures and the knowledge they represent in order to validate research findings and to generate new hypotheses. By themselves, these figures are nearly always incomprehensible to both humans and machines and their associated texts are therefore essential for full comprehension. The associated text of a figure, however, is scattered throughout its full-text article and contains redundant information content. In this paper, we report the continued development and evaluation of several figure summarization systems, the FigSum+ systems, that automatically identify associated texts, remove redundant information, and generate a text summary for every figure in an article. Using a set of 94 annotated figures selected from 19 different journals, we conducted an intrinsic evaluation of FigSum+. We evaluate the performance by precision, recall, F1, and ROUGE scores. The best FigSum+ system is based on an unsupervised method, achieving F1 score of 0.66 and ROUGE-1 score of 0.97. The annotated data is available at figshare.com (http://figshare.com/articles/Figure_Associated_Text_Summarization_and_Evaluation/858903.

  1. Text mining from ontology learning to automated text processing applications

    CERN Document Server

    Biemann, Chris

    2014-01-01

    This book comprises a set of articles that specify the methodology of text mining, describe the creation of lexical resources in the framework of text mining and use text mining for various tasks in natural language processing (NLP). The analysis of large amounts of textual data is a prerequisite to build lexical resources such as dictionaries and ontologies and also has direct applications in automated text processing in fields such as history, healthcare and mobile applications, just to name a few. This volume gives an update in terms of the recent gains in text mining methods and reflects

  2. n-Gram-Based Text Compression

    Directory of Open Access Journals (Sweden)

    Vu H. Nguyen

    2016-01-01

    Full Text Available We propose an efficient method for compressing Vietnamese text using n-gram dictionaries. It has a significant compression ratio in comparison with those of state-of-the-art methods on the same dataset. Given a text, first, the proposed method splits it into n-grams and then encodes them based on n-gram dictionaries. In the encoding phase, we use a sliding window with a size that ranges from bigram to five grams to obtain the best encoding stream. Each n-gram is encoded by two to four bytes accordingly based on its corresponding n-gram dictionary. We collected 2.5 GB text corpus from some Vietnamese news agencies to build n-gram dictionaries from unigram to five grams and achieve dictionaries with a size of 12 GB in total. In order to evaluate our method, we collected a testing set of 10 different text files with different sizes. The experimental results indicate that our method achieves compression ratio around 90% and outperforms state-of-the-art methods.

  3. E-text

    DEFF Research Database (Denmark)

    Finnemann, Niels Ole

    2018-01-01

    text can be defined by taking as point of departure the digital format in which everything is represented in the binary alphabet. While the notion of text, in most cases, lends itself to be independent of medium and embodiment, it is also often tacitly assumed that it is, in fact, modeled around...... the print medium, rather than written text or speech. In late 20th century, the notion of text was subject to increasing criticism as in the question raised within literary text theory: is there a text in this class? At the same time, the notion was expanded by including extra linguistic sign modalities...

  4. Texting on the Move

    Science.gov (United States)

    ... text. What's the Big Deal? The problem is multitasking. No matter how young and agile we are, ... on something other than the road. In fact, driving while texting (DWT) can be more dangerous than ...

  5. Text Coherence in Translation

    Science.gov (United States)

    Zheng, Yanping

    2009-01-01

    In the thesis a coherent text is defined as a continuity of senses of the outcome of combining concepts and relations into a network composed of knowledge space centered around main topics. And the author maintains that in order to obtain the coherence of a target language text from a source text during the process of translation, a translator can…

  6. TEXT DEIXIS IN NARRATIVE SEQUENCES

    Directory of Open Access Journals (Sweden)

    Josep Rivera

    2007-06-01

    Full Text Available This study looks at demonstrative descriptions, regarding them as text-deictic procedures which contribute to weave discourse reference. Text deixis is thought of as a metaphorical referential device which maps the ground of utterance onto the text itself. Demonstrative expressions with textual antecedent-triggers, considered as the most important text-deictic units, are identified in a narrative corpus consisting of J. M. Barrie’s Peter Pan and its translation into Catalan. Some linguistic and discourse variables related to DemNPs are analysed to characterise adequately text deixis. It is shown that this referential device is usually combined with abstract nouns, thus categorising and encapsulating (non-nominal complex discourse entities as nouns, while performing a referential cohesive function by means of the text deixis + general noun type of lexical cohesion.

  7. Interconnectedness und digitale Texte

    Directory of Open Access Journals (Sweden)

    Detlev Doherr

    2013-04-01

    Full Text Available Zusammenfassung Die multimedialen Informationsdienste im Internet werden immer umfangreicher und umfassender, wobei auch die nur in gedruckter Form vorliegenden Dokumente von den Bibliotheken digitalisiert und ins Netz gestellt werden. Über Online-Dokumentenverwaltungen oder Suchmaschinen können diese Dokumente gefunden und dann in gängigen Formaten wie z.B. PDF bereitgestellt werden. Dieser Artikel beleuchtet die Funktionsweise der Humboldt Digital Library, die seit mehr als zehn Jahren Dokumente von Alexander von Humboldt in englischer Übersetzung im Web als HDL (Humboldt Digital Library kostenfrei zur Verfügung stellt. Anders als eine digitale Bibliothek werden dabei allerdings nicht nur digitalisierte Dokumente als Scan oder PDF bereitgestellt, sondern der Text als solcher und in vernetzter Form verfügbar gemacht. Das System gleicht damit eher einem Informationssystem als einer digitalen Bibliothek, was sich auch in den verfügbaren Funktionen zur Auffindung von Texten in unterschiedlichen Versionen und Übersetzungen, Vergleichen von Absätzen verschiedener Dokumente oder der Darstellung von Bilden in ihrem Kontext widerspiegelt. Die Entwicklung von dynamischen Hyperlinks auf der Basis der einzelnen Textabsätze der Humboldt‘schen Werke in Form von Media Assets ermöglicht eine Nutzung der Programmierschnittstelle von Google Maps zur geographischen wie auch textinhaltlichen Navigation. Über den Service einer digitalen Bibliothek hinausgehend, bietet die HDL den Prototypen eines mehrdimensionalen Informationssystems, das mit dynamischen Strukturen arbeitet und umfangreiche thematische Auswertungen und Vergleiche ermöglicht. Summary The multimedia information services on Internet are becoming more and more comprehensive, even the printed documents are digitized and republished as digital Web documents by the libraries. Those digital files can be found by search engines or management tools and provided as files in usual formats as

  8. Method

    Directory of Open Access Journals (Sweden)

    Ling Fiona W.M.

    2017-01-01

    Full Text Available Rapid prototyping of microchannel gain lots of attention from researchers along with the rapid development of microfluidic technology. The conventional methods carried few disadvantages such as high cost, time consuming, required high operating pressure and temperature and involve expertise in operating the equipment. In this work, new method adapting xurography method is introduced to replace the conventional method of fabrication of microchannels. The novelty in this study is replacing the adhesion film with clear plastic film which was used to cut the design of the microchannel as the material is more suitable for fabricating more complex microchannel design. The microchannel was then mold using polymethyldisiloxane (PDMS and bonded with a clean glass to produce a close microchannel. The microchannel produced had a clean edge indicating good master mold was produced using the cutting plotter and the bonding between the PDMS and glass was good where no leakage was observed. The materials used in this method is cheap and the total time consumed is less than 5 hours where this method is suitable for rapid prototyping of microchannel.

  9. Dictionaries for text production

    DEFF Research Database (Denmark)

    Fuertes-Olivera, Pedro; Bergenholtz, Henning

    2018-01-01

    Dictionaries for Text Production are information tools that are designed and constructed for helping users to produce (i.e. encode) texts, both oral and written texts. These can be broadly divided into two groups: (a) specialized text production dictionaries, i.e., dictionaries that only offer...... a small amount of lexicographic data, most or all of which are typically used in a production situation, e.g. synonym dictionaries, grammar and spelling dictionaries, collocation dictionaries, concept dictionaries such as the Longman Language Activator, which is advertised as the World’s First Production...... Dictionary; (b) general text production dictionaries, i.e., dictionaries that offer all or most of the lexicographic data that are typically used in a production situation. A review of existing production dictionaries reveals that there are many specialized text production dictionaries but only a few general...

  10. Text Genres in Information Organization

    Science.gov (United States)

    Nahotko, Marek

    2016-01-01

    Introduction: Text genres used by so-called information organizers in the processes of information organization in information systems were explored in this research. Method: The research employed text genre socio-functional analysis. Five genre groups in information organization were distinguished. Every genre group used in information…

  11. Predicting Prosody from Text for Text-to-Speech Synthesis

    CERN Document Server

    Rao, K Sreenivasa

    2012-01-01

    Predicting Prosody from Text for Text-to-Speech Synthesis covers the specific aspects of prosody, mainly focusing on how to predict the prosodic information from linguistic text, and then how to exploit the predicted prosodic knowledge for various speech applications. Author K. Sreenivasa Rao discusses proposed methods along with state-of-the-art techniques for the acquisition and incorporation of prosodic knowledge for developing speech systems. Positional, contextual and phonological features are proposed for representing the linguistic and production constraints of the sound units present in the text. This book is intended for graduate students and researchers working in the area of speech processing.

  12. Instant Sublime Text starter

    CERN Document Server

    Haughee, Eric

    2013-01-01

    A starter which teaches the basic tasks to be performed with Sublime Text with the necessary practical examples and screenshots. This book requires only basic knowledge of the Internet and basic familiarity with any one of the three major operating systems, Windows, Linux, or Mac OS X. However, as Sublime Text 2 is primarily a text editor for writing software, many of the topics discussed will be specifically relevant to software development. That being said, the Sublime Text 2 Starter is also suitable for someone without a programming background who may be looking to learn one of the tools of

  13. Linguistics in Text Interpretation

    DEFF Research Database (Denmark)

    Togeby, Ole

    2011-01-01

    A model for how text interpretation proceeds from what is pronounced, through what is said to what is comunicated, and definition of the concepts 'presupposition' and 'implicature'.......A model for how text interpretation proceeds from what is pronounced, through what is said to what is comunicated, and definition of the concepts 'presupposition' and 'implicature'....

  14. LocText

    DEFF Research Database (Denmark)

    Cejuela, Juan Miguel; Vinchurkar, Shrikant; Goldberg, Tatyana

    2018-01-01

    trees and was trained and evaluated on a newly improved LocTextCorpus. Combined with an automatic named-entity recognizer, LocText achieved high precision (P = 86%±4). After completing development, we mined the latest research publications for three organisms: human (Homo sapiens), budding yeast...

  15. Systematic text condensation

    DEFF Research Database (Denmark)

    Malterud, Kirsti

    2012-01-01

    To present background, principles, and procedures for a strategy for qualitative analysis called systematic text condensation and discuss this approach compared with related strategies.......To present background, principles, and procedures for a strategy for qualitative analysis called systematic text condensation and discuss this approach compared with related strategies....

  16. The Perfect Text.

    Science.gov (United States)

    Russo, Ruth

    1998-01-01

    A chemistry teacher describes the elements of the ideal chemistry textbook. The perfect text is focused and helps students draw a coherent whole out of the myriad fragments of information and interpretation. The text would show chemistry as the central science necessary for understanding other sciences and would also root chemistry firmly in the…

  17. Text 2 Mind Map

    OpenAIRE

    Iona, John

    2017-01-01

    This is a review of the web resource 'Text 2 Mind Map' www.Text2MindMap.com. It covers what the resource is, and how it might be used in Library and education context, in particular for School Librarians.

  18. Text File Comparator

    Science.gov (United States)

    Kotler, R. S.

    1983-01-01

    File Comparator program IFCOMP, is text file comparator for IBM OS/VScompatable systems. IFCOMP accepts as input two text files and produces listing of differences in pseudo-update form. IFCOMP is very useful in monitoring changes made to software at the source code level.

  19. Same day identification and full panel antimicrobial susceptibility testing of bacteria from positive blood culture bottles made possible by a combined lysis-filtration method with MALDI-TOF VITEK mass spectrometry and the VITEK2 system.

    Directory of Open Access Journals (Sweden)

    Alexandra Machen

    Full Text Available Rapid identification and antimicrobial susceptibility testing of microorganisms causing bloodstream infections or sepsis have the potential to improve patient care. This proof-of-principle study evaluates the Lysis-Filtration Method for identification as well as antimicrobial susceptibility testing of bacteria directly from positive blood culture bottles in a clinical setting. A total of 100 non-duplicated positive blood cultures were tested and 1012 microorganism-antimicrobial combinations were assessed. An aliquot of non-charcoal blood culture broth was incubated with lysis buffer briefly before being filtered and washed. Microorganisms recovered from the filter membrane were first identified by using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight VITEK® Mass Spectrometry (VITEK MS. After quick identification from VITEK MS, filtered microorganisms were inoculated to VITEK®2 system for full panel antimicrobial susceptibility testing analysis. Of 100 bottles tested, the VITEK MS resulted in 94.0% correct organism identification to the species level. Compared to the conventional antimicrobial susceptibility testing methods, direct antimicrobial susceptibility testing from VITEK®2 resulted in 93.5% (946/1012 category agreement of antimicrobials tested, with 3.6% (36/1012 minor error, 1.7% (7/1012 major error, and 1.3% (13/1012 very major error of antimicrobials. The average time to identification and antimicrobial susceptibility testing was 11.4 hours by using the Lysis-Filtration method for both VITEK MS and VITEK®2 compared to 56.3 hours by using conventional methods (p<0.00001. Thus, the same-day results of microorganism identification and antimicrobial susceptibility testing directly from positive blood culture can be achieved and can be used for appropriate antibiotic therapy and antibiotic stewardship.

  20. Monitoring interaction and collective text production through text mining

    Directory of Open Access Journals (Sweden)

    Macedo, Alexandra Lorandi

    2014-04-01

    Full Text Available This article presents the Concepts Network tool, developed using text mining technology. The main objective of this tool is to extract and relate terms of greatest incidence from a text and exhibit the results in the form of a graph. The Network was implemented in the Collective Text Editor (CTE which is an online tool that allows the production of texts in synchronized or non-synchronized forms. This article describes the application of the Network both in texts produced collectively and texts produced in a forum. The purpose of the tool is to offer support to the teacher in managing the high volume of data generated in the process of interaction amongst students and in the construction of the text. Specifically, the aim is to facilitate the teacher’s job by allowing him/her to process data in a shorter time than is currently demanded. The results suggest that the Concepts Network can aid the teacher, as it provides indicators of the quality of the text produced. Moreover, messages posted in forums can be analyzed without their content necessarily having to be pre-read.

  1. Investigating Text Input Methods for Mobile Phones

    OpenAIRE

    Barry ORiordan; Kevin Curran; Derek Woods

    2005-01-01

    Human Computer Interaction is a primary factor in the success or failure of any device but if an objective view is taken of the current mobile phone market you would be forgiven for thinking usability was secondary to aesthetics. Many phone manufacturers modify the design of phones to be different than the competition and to target fashion trends, usually at the expense of usability and performance. There is a lack of awareness among many buyers of the usability of the dev...

  2. EST: Evading Scientific Text.

    Science.gov (United States)

    Ward, Jeremy

    2001-01-01

    Examines chemical engineering students' attitudes to text and other parts of English language textbooks. A questionnaire was administered to a group of undergraduates. Results reveal one way students get around the problem of textbook reading. (Author/VWL)

  3. nal Sesotho texts

    African Journals Online (AJOL)

    with literary texts written in indigenous South African languages. The project ... Homi Bhabha uses the words of Salman Rushdie to underline the fact that new .... I could not conceptualise an African-language-to-African-language dictionary. An.

  4. Machine Translation from Text

    Science.gov (United States)

    Habash, Nizar; Olive, Joseph; Christianson, Caitlin; McCary, John

    Machine translation (MT) from text, the topic of this chapter, is perhaps the heart of the GALE project. Beyond being a well defined application that stands on its own, MT from text is the link between the automatic speech recognition component and the distillation component. The focus of MT in GALE is on translating from Arabic or Chinese to English. The three languages represent a wide range of linguistic diversity and make the GALE MT task rather challenging and exciting.

  5. Comparison of conventional full spine radiographs and fluoroscopic scanning method in young patients with idiopathic scoliosis; Vergleich von konventioneller Wirbelsaeulenganzaufnahme und fluoroskopischer Scan-Methode bei jungen Patienten mit idiopathischer Skoliose

    Energy Technology Data Exchange (ETDEWEB)

    Schaefer, J.; Kottke, R.; Claussen, C. [Abt. fuer Radiologische Diagnostik, Universitaetsklinikum Tuebingen (Germany); Kluba, T.; Niemeyer, T.; Hahnfeldt, T. [Klinik und Poliklinik fuer Orthopaedie, Universitaetsklinikum Tuebingen (Germany); Vonthein, R. [Inst. fuer Medizinische Biometrie, Universitaetsklinikum Tuebingen (Germany); Kamm, K.F. [Philips Medizin Systeme GmbH, Hamburg (Germany)

    2005-08-01

    Purpose: evaluation of low-dose full spine radiographs using fluoroscopic images for the assessment of the Cobb angle measurement in patients with scoliosis. Material and methods: twenty-one consecutive patients (aged 10-27 years, mean age 14 years) with a conventional full spine examination (film speed class 800) underwent a follow-up exam using digital pulsed fluoroscopy (Multi Diagnost 4, Philips Medical Systems, Eindhoven, The Netherlands). The mean follow-up was 9 months. During a synchronized scan with a C-arm speed of 4 cm/sec fluoroscopic images were stored with a pulsed frequency of 3 images per second. The single images were merged and reconstructed to one image with the software easy spine (Philips medical Systems, Eindhoven, The Netherlands). The corresponding dose-area product values (DAP) of both methods were compared. Three independent observers assessed Cobb angles and image quality for each technique. Results: the mean DAP values for conventional imaging was 94.9 cGy x cm{sup 2} and for fluoroscopy 7.8 cGy x cm{sup 2}, respectively. A significant dose reduction of 91.8% (CI 91% to 95%) was calculated. The average absolute angle difference between the observers was found to be 2.7 for conventional imaging and 2.4 for the fluoroscopic method. Interobserver standard deviation of 2.9 was lower than the 5.3 for conventional images. Image quality was better in the conventional images. Conclusion: using the scanning method, we could achieve a mean reduction of the radiation dose of 92%, while the accuracy of the Cobb angle measurements was comparable for both techniques despite of reduced image quality of digital fluoroscopy. (orig.)

  6. Development of a simplified and dynamic method for double glazing façade with night insulation and validated by full-scale façade element

    DEFF Research Database (Denmark)

    Liu, Mingzhe; Wittchen, Kim Bjarne; Heiselberg, Per

    2013-01-01

    The study aims to develop a simplified calculation method to simulate the performance of double glazing fac¸ ade with night insulation. This paper describes the method to calculate the thermal properties (Uvalue) and comfort performance (internal surface temperature of glazing) of the double...... with night insulation is calculated and compared with that of the facade without the night insulation. Based on standards EN 410 and EN 673, the method takes the thermal mass of glazing and the infiltration between the insulation layer and glazing into account. Furthermore it is capable of implementing whole...

  7. Figure-associated text summarization and evaluation.

    Science.gov (United States)

    Polepalli Ramesh, Balaji; Sethi, Ricky J; Yu, Hong

    2015-01-01

    Biomedical literature incorporates millions of figures, which are a rich and important knowledge resource for biomedical researchers. Scientists need access to the figures and the knowledge they represent in order to validate research findings and to generate new hypotheses. By themselves, these figures are nearly always incomprehensible to both humans and machines and their associated texts are therefore essential for full comprehension. The associated text of a figure, however, is scattered throughout its full-text article and contains redundant information content. In this paper, we report the continued development and evaluation of several figure summarization systems, the FigSum+ systems, that automatically identify associated texts, remove redundant information, and generate a text summary for every figure in an article. Using a set of 94 annotated figures selected from 19 different journals, we conducted an intrinsic evaluation of FigSum+. We evaluate the performance by precision, recall, F1, and ROUGE scores. The best FigSum+ system is based on an unsupervised method, achieving F1 score of 0.66 and ROUGE-1 score of 0.97. The annotated data is available at figshare.com (http://figshare.com/articles/Figure_Associated_Text_Summarization_and_Evaluation/858903).

  8. Basic Test Framework for the Evaluation of Text Line Segmentation and Text Parameter Extraction

    Directory of Open Access Journals (Sweden)

    Darko Brodić

    2010-05-01

    Full Text Available Text line segmentation is an essential stage in off-line optical character recognition (OCR systems. It is a key because inaccurately segmented text lines will lead to OCR failure. Text line segmentation of handwritten documents is a complex and diverse problem, complicated by the nature of handwriting. Hence, text line segmentation is a leading challenge in handwritten document image processing. Due to inconsistencies in measurement and evaluation of text segmentation algorithm quality, some basic set of measurement methods is required. Currently, there is no commonly accepted one and all algorithm evaluation is custom oriented. In this paper, a basic test framework for the evaluation of text feature extraction algorithms is proposed. This test framework consists of a few experiments primarily linked to text line segmentation, skew rate and reference text line evaluation. Although they are mutually independent, the results obtained are strongly cross linked. In the end, its suitability for different types of letters and languages as well as its adaptability are its main advantages. Thus, the paper presents an efficient evaluation method for text analysis algorithms.

  9. Method for the determination of the spectral composition of power-full energy-rich deuteron bundles generated in the plasma focus

    International Nuclear Information System (INIS)

    Philippow, N.W.; Philippowa, T.I.

    1977-01-01

    A method is presented which allows a quantitative determination of the spectral composition of a high power deuterium bunch produced in noncylindrical Z-pinch type systems when the plasma shell is increased. The bunch moves in the normal direction, i.e. from the anode to the region behind the cathodes. The method is based on the principle of a time-of-flight spectrometer, where the neutron scintillation detector signal is processed appropriately and displayed on a scope. The neutrons are produced by the 12 C(d,n) 13 N-reaction in the carbon target when hit by a deuterium bunch. These investigations have been performed in parallel with the method based on a comparison of carbon- and aluminium target activities. This method has been used in the past by R. Gallickson and G. Salin in the Livermore Laboratory for the same purpose but has now untergone some improvements. (orig.) [de

  10. Wastewater Treatment Anaerobic Digester Foaming Prevention and Control Methods - Literature Review and Survey - Full-Scale Studies (WERF Report INFR1SG10)

    Science.gov (United States)

    This project addresses the issue of anaerobic digester (AD) foaming in different water resource recovery facilities (WRRFs). This two-volume report is a compilation of an AD foaming literature review, a plant survey, and findings from full-scale studies. The literature review hel...

  11. TEXT Energy Storage System

    International Nuclear Information System (INIS)

    Weldon, W.F.; Rylander, H.G.; Woodson, H.H.

    1977-01-01

    The Texas Experimental Tokamak (TEXT) Enery Storage System, designed by the Center for Electromechanics (CEM), consists of four 50 MJ, 125 V homopolar generators and their auxiliaries and is designed to power the toroidal and poloidal field coils of TEXT on a two-minute duty cycle. The four 50 MJ generators connected in series were chosen because they represent the minimum cost configuration and also represent a minimal scale up from the successful 5.0 MJ homopolar generator designed, built, and operated by the CEM

  12. Text and ideology: text-oriented discourse analysis

    Directory of Open Access Journals (Sweden)

    Maria Eduarda Gonçalves Peixoto

    2018-04-01

    Full Text Available The article aims to contribute to the understanding of the connection between text and ideology articulated by the text-oriented analysis of discourse (ADTO. Based on the reflections of Fairclough (1989, 2001, 2003 and Fairclough and Chouliaraki (1999, the debate presents the social ontology that ADTO uses to base its conception of social life as an open system and textually mediated; the article then explains the chronological-narrative development of the main critical theories of ideology, by virtue of which ADTO organizes the assumptions that underpin the particular use it makes of the term. Finally, the discussion presents the main aspects of the connection between text and ideology, offering a conceptual framework that can contribute to the domain of the theme according to a critical discourse analysis approach.

  13. New mathematical cuneiform texts

    CERN Document Server

    Friberg, Jöran

    2016-01-01

    This monograph presents in great detail a large number of both unpublished and previously published Babylonian mathematical texts in the cuneiform script. It is a continuation of the work A Remarkable Collection of Babylonian Mathematical Texts (Springer 2007) written by Jöran Friberg, the leading expert on Babylonian mathematics. Focussing on the big picture, Friberg explores in this book several Late Babylonian arithmetical and metro-mathematical table texts from the sites of Babylon, Uruk and Sippar, collections of mathematical exercises from four Old Babylonian sites, as well as a new text from Early Dynastic/Early Sargonic Umma, which is the oldest known collection of mathematical exercises. A table of reciprocals from the end of the third millennium BC, differing radically from well-documented but younger tables of reciprocals from the Neo-Sumerian and Old-Babylonian periods, as well as a fragment of a Neo-Sumerian clay tablet showing a new type of a labyrinth are also discussed. The material is presen...

  14. The Emar Lexical Texts

    NARCIS (Netherlands)

    Gantzert, Merijn

    2011-01-01

    This four-part work provides a philological analysis and a theoretical interpretation of the cuneiform lexical texts found in the Late Bronze Age city of Emar, in present-day Syria. These word and sign lists, commonly dated to around 1100 BC, were almost all found in the archive of a single school.

  15. Text Induced Spelling Correction

    NARCIS (Netherlands)

    Reynaert, M.W.C.

    2004-01-01

    We present TISC, a language-independent and context-sensitive spelling checking and correction system designed to facilitate the automatic removal of non-word spelling errors in large corpora. Its lexicon is derived from a very large corpus of raw text, without supervision, and contains word

  16. Texts and Readers.

    Science.gov (United States)

    Iser, Wolfgang

    1980-01-01

    Notes that, since fictional discourse need not reflect prevailing systems of meaning and norms or values, readers gain detachment from their own presuppositions; by constituting and formulating text-sense, readers are constituting and formulating their own cognition and becoming aware of the operations for doing so. (FL)

  17. Documents and legal texts

    International Nuclear Information System (INIS)

    2017-01-01

    This section treats of the following documents and legal texts: 1 - Belgium 29 June 2014 - Act amending the Act of 22 July 1985 on Third-Party Liability in the Field of Nuclear Energy; 2 - Belgium, 7 December 2016. - Act amending the Act of 22 July 1985 on Third-Party Liability in the Field of Nuclear Energy

  18. Full factorial design applied to the synthesis of Pd-?Ag nanobars by the polyol method and the perspective for ethanol oxidation

    OpenAIRE

    Carrera-Cerritos, Raul; Ponce de Leon, Carlos; Ledesma-Garcia, J.; Fuentes-Ramirez, R.; Arriaga, L.G.

    2014-01-01

    Full factorial design methodology was applied to the synthesis and optimization of Pd–Ag nanobars usingthe polyol process as the reducer. The concentration of Br? ions, the temperature and the reaction timewere selected as factors to study, whereas the yield (% nanobars) was the response to be analyzed. Thenanoparticles were characterized by X-ray diffraction, energy-dispersive X-ray spectroscopy,transmission electron microscopy, high-resolution transmission electron microscopy and X-rayphoto...

  19. About the use of the Monte-Carlo code based tracing algorithm and the volume fraction method for S n full core calculations

    Energy Technology Data Exchange (ETDEWEB)

    Gurevich, M. I.; Oleynik, D. S. [RRC Kurchatov Inst., Kurchatov Sq., 1, 123182, Moscow (Russian Federation); Russkov, A. A.; Voloschenko, A. M. [Keldysh Inst. of Applied Mathematics, Miusskaya Sq., 4, 125047, Moscow (Russian Federation)

    2006-07-01

    The tracing algorithm that is implemented in the geometrical module of Monte-Carlo transport code MCU is applied to calculate the volume fractions of original materials by spatial cells of the mesh that overlays problem geometry. In this way the 3D combinatorial geometry presentation of the problem geometry, used by MCU code, is transformed to the user defined 2D or 3D bit-mapped ones. Next, these data are used in the volume fraction (VF) method to approximate problem geometry by introducing additional mixtures for spatial cells, where a few original materials are included. We have found that in solving realistic 2D and 3D core problems a sufficiently fast convergence of the VF method takes place if the spatial mesh is refined. Virtually, the proposed variant of implementation of the VF method seems as a suitable geometry interface between Monte-Carlo and S{sub n} transport codes. (authors)

  20. Development and sensitivity study of a simplified and dynamic method for double glazing facade and verified by a full-scale façade element

    DEFF Research Database (Denmark)

    Liu, Mingzhe; Wittchen, Kim Bjarne; Heiselberg, Per

    2014-01-01

    The research aims to develop a simplified calculation method for double glazing facade to calculate its thermal and solar properties (U and g value) together with comfort performance (internal surface temperature of the glazing). Double glazing is defined as 1D model with nodes representing......, taking the thermal mass of the glazing into account. In addition, angle and spectral dependency of solar characteristic is also considered during the calculation. By using the method, it is possible to calculate whole year performance at different time steps, which makes it a time economical and accurate...

  1. Strategies for Translating Vocative Texts

    Directory of Open Access Journals (Sweden)

    Olga COJOCARU

    2014-12-01

    Full Text Available The paper deals with the linguistic and cultural elements of vocative texts and the techniques used in translating them by giving some examples of texts that are typically vocative (i.e. advertisements and instructions for use. Semantic and communicative strategies are popular in translation studies and each of them has its own advantages and disadvantages in translating vocative texts. The advantage of semantic translation is that it takes more account of the aesthetic value of the SL text, while communicative translation attempts to render the exact contextual meaning of the original text in such a way that both content and language are readily acceptable and comprehensible to the readership. Focus is laid on the strategies used in translating vocative texts, strategies that highlight and introduce a cultural context to the target audience, in order to achieve their overall purpose, that is to sell or persuade the reader to behave in a certain way. Thus, in order to do that, a number of advertisements from the field of cosmetics industry and electronic gadgets were selected for analysis. The aim is to gather insights into vocative text translation and to create new perspectives on this field of research, now considered a process of innovation and diversion, especially in areas as important as economy and marketing.

  2. Teaching an Interdisciplinary Graduate-Level Methods Course in an Openly-Networked Connected Learning Environment: A Glass Half-Full

    Science.gov (United States)

    Secret, Mary; Bryant, Nita L.; Cummings, Cory R.

    2017-01-01

    Our paper describes the design and delivery of an online interdisciplinary social science research methods course (ISRM) for graduate students in sociology, education, social work, and public administration. Collaborative activities and learning took place in two types of computer-mediated learning environments: a closed Blackboard course…

  3. Method translation and full metadata transfer from thermal to differential flow modulated comprehensive two dimensional gas chromatography: Profiling of suspected fragrance allergens.

    Science.gov (United States)

    Cordero, Chiara; Rubiolo, Patrizia; Reichenbach, Stephen E; Carretta, Andrea; Cobelli, Luigi; Giardina, Matthew; Bicchi, Carlo

    2017-01-13

    The possibility to transfer methods from thermal to differential-flow modulated comprehensive two-dimensional gas chromatographic (GC×GC) platforms is of high interest to improve GC×GC flexibility and increase the compatibility of results from different platforms. The principles of method translation are here applied to an original method, developed for a loop-type thermal modulated GC×GC-MS/FID system, suitable for quali-quantitative screening of suspected fragrance allergens. The analysis conditions were translated to a reverse-injection differential flow modulated platform (GC×2GC-MS/FID) with a dual-parallel secondary column and dual detection. The experimental results, for a model mixture of suspected volatile allergens and for raw fragrance mixtures of different composition, confirmed the feasibility of translating methods by preserving 1 D elution order, as well as the relative alignment of resulting 2D peak patterns. A correct translation produced several benefits including an effective transfer of metadata (compound names, MS fragmentation pattern, response factors) by automatic template transformation and matching from the original/reference method to its translated counterpart. The correct translation provided: (a) 2D pattern repeatability, (b) MS fragmentation pattern reliability for identity confirmation, and (c) comparable response factors and quantitation accuracy within a concentration range of three orders of magnitude. The adoption of a narrow bore (i.e. 0.1mm d c ) first-dimension column to operate under close-to-optimal conditions with the differential-flow modulation GC×GC platform was also advantageous in halving the total analysis under the translated conditions. Copyright © 2016 Elsevier B.V. All rights reserved.

  4. Strategy as Texts

    DEFF Research Database (Denmark)

    Obed Madsen, Søren

    of the strategy into four categories. Second, the managers produce new texts based on the original strategy document by using four different ways of translation models. The study’s findings contribute to three areas. Firstly, it shows that translation is more than a sociological process. It is also...... a craftsmanship that requires knowledge and skills, which unfortunately seems to be overlooked in both the literature and in practice. Secondly, it shows that even though a strategy text is in singular, the translation makes strategy plural. Thirdly, the article proposes a way to open up the black box of what......This article shows empirically how managers translate a strategy plan at an individual level. By analysing how managers in three organizations translate strategies, it identifies that the translation happens in two steps: First, the managers decipher the strategy by coding the different parts...

  5. Application of LSP texts in translator training

    Directory of Open Access Journals (Sweden)

    Larisa Ilynska

    2017-06-01

    Full Text Available The paper presents discussion of the results of extensive empirical research into efficient methods of educating and training translators of LSP (language for special purposes texts. The methodology is based on using popular LSP texts in the respective fields as one of the main media for translator training. The aim of the paper is to investigate the efficiency of this methodology in developing thematic, linguistic and cultural competences of the students, following Bloom’s revised taxonomy and European Master in Translation Network (EMT translator training competences. The methodology has been tested on the students of a professional Master study programme called Technical Translation implemented by the Institute of Applied Linguistics, Riga Technical University, Latvia. The group of students included representatives of different nationalities, translating from English into Latvian, Russian and French. Analysis of popular LSP texts provides an opportunity to structure student background knowledge and expand it to account for linguistic innovation. Application of popular LSP texts instead of purely technical or scientific texts characterised by neutral style and rigid genre conventions provides an opportunity for student translators to develop advanced text processing and decoding skills, to develop awareness of expressive resources of the source and target languages and to develop understanding of socio-pragmatic language use.

  6. Full non-linear treatment of the global thermospheric wind system. I - Mathematical method and analysis of forces. II - Results and comparison with observations

    Science.gov (United States)

    Blum, P. W.; Harris, I.

    1975-01-01

    The equations of horizontal motion of the neutral atmosphere between 120 and 500 km are integrated with the inclusion of all nonlinear terms of the convective derivative and the viscous forces due to vertical and horizontal velocity gradients. Empirical models of the distribution of neutral and charged particles are assumed to be known. The model of velocities developed is a steady state model. In Part I the mathematical method used in the integration of the Navier-Stokes equations is described and the various forces are analyzed. Results of the method given in Part I are presented with comparison with previous calculations and observations of upper atmospheric winds. Conclusions are that nonlinear effects are only significant in the equatorial region, especially at solstice conditions and that nonlinear effects do not produce any superrotation.

  7. Fast and robust methods for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2

    DEFF Research Database (Denmark)

    Kvisgaard, Lise Kirstine; Hjulsager, Charlotte Kristiane; Fahnøe, Ulrik

    . In the present study, fast and robust methods for long range RT-PCR amplification and subsequent next generation sequencing (NGS) of PRRSV Type 1 and Type 2 viruses were developed and validated on nine Type 1 and nine Type 2 PRRSV viruses. The methods were shown to generate robust and reliable sequences both...... on primary material and cell culture adapted viruses and the protocols were shown to perform well on all three NGS platforms tested (Roche 454 FLX, Illumina HiSeq 2000, and Ion Torrent PGM™ Sequencer). To complete the sequences at the 5’ end, 5’ Rapid Amplification of cDNA Ends (5’ RACE) was conducted...... followed by cycle sequencing of clones. The genome lengths were determined to be 14,876-15,098 and 15,342-15,408 nucleotides long for the Type 1 and Type 2 strains, respectively. These methods will greatly facilitate the generation of more complete genome PRRSV sequences globally which in turn may lead...

  8. Text-based language identification for the South African languages

    CSIR Research Space (South Africa)

    Botha, G

    2006-11-01

    Full Text Available -crawling ap- proach described in [2]. That method employed an early language-identification system for au- tomatic selection of Web pages, and turned out to suffer from two limitations, namely wrongly identified web pages and web pages with mixed text (i...

  9. English Metafunction Analysis in Chemistry Text: Characterization of Scientific Text

    Directory of Open Access Journals (Sweden)

    Ahmad Amin Dalimunte, M.Hum

    2013-09-01

    Full Text Available The objectives of this research are to identify what Metafunctions are applied in chemistry text and how they characterize a scientific text. It was conducted by applying content analysis. The data for this research was a twelve-paragraph chemistry text. The data were collected by applying a documentary technique. The document was read and analyzed to find out the Metafunction. The data were analyzed by some procedures: identifying the types of process, counting up the number of the processes, categorizing and counting up the cohesion devices, classifying the types of modulation and determining modality value, finally counting up the number of sentences and clauses, then scoring the grammatical intricacy index. The findings of the research show that Material process (71of 100 is mostly used, circumstance of spatial location (26 of 56 is more dominant than the others. Modality (5 is less used in order to avoid from subjectivity. Impersonality is implied through less use of reference either pronouns (7 or demonstrative (7, conjunctions (60 are applied to develop ideas, and the total number of the clauses are found much more dominant (109 than the total number of the sentences (40 which results high grammatical intricacy index. The Metafunction found indicate that the chemistry text has fulfilled the characteristics of scientific or academic text which truly reflects it as a natural science.

  10. Reading Authentic Texts

    DEFF Research Database (Denmark)

    Balling, Laura Winther

    2013-01-01

    Most research on cognates has focused on words presented in isolation that are easily defined as cognate between L1 and L2. In contrast, this study investigates what counts as cognate in authentic texts and how such cognates are read. Participants with L1 Danish read news articles in their highly...... proficient L2, English, while their eye-movements were monitored. The experiment shows a cognate advantage for morphologically simple words, but only when cognateness is defined relative to translation equivalents that are appropriate in the context. For morphologically complex words, a cognate disadvantage...... word predictability indexed by the conditional probability of each word....

  11. Documents and legal texts

    International Nuclear Information System (INIS)

    2016-01-01

    This section treats of the following documents and legal texts: 1 - Brazil: Law No. 13,260 of 16 March 2016 (To regulate the provisions of item XLIII of Article 5 of the Federal Constitution on terrorism, dealing with investigative and procedural provisions and redefining the concept of a terrorist organisation; and amends Laws No. 7,960 of 21 December 1989 and No. 12,850 of 2 August 2013); 2 - India: The Atomic Energy (Amendment) Act, 2015; Department Of Atomic Energy Notification (Civil Liability for Nuclear Damage); 3 - Japan: Act on Subsidisation, etc. for Nuclear Damage Compensation Funds following the implementation of the Convention on Supplementary Compensation for Nuclear Damage

  12. A full dimensional investigation of infrared spectroscopy of the RbCs dimer using the multi-configuration time-dependent Hartree method

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Huihui; Yang, Yonggang, E-mail: ygyang@sxu.edu.cn; Xiao, Liantuan; Jia, Suotang [State Key Laboratory of Quantum Optics and Quantum Optics Devices, Institute of Laser Spectroscopy, Shanxi University, Taiyuan 030006 (China)

    2013-12-28

    The geometry and infrared absorption spectrum of (RbCs){sub 2} have been studied by full dimensional quantum dynamics simulations. For this purpose, the potential energy and dipole moment surfaces are generated by means of a cluster expansion with all two and three mode correlations, and fitted to analytical expressions with negligible deviations. Accordingly, the ground state (RbCs){sub 2} has a diamond geometry with D{sub 2h} symmetry. The infrared spectrum with frequencies up to 120 cm{sup −1}, exhibits rich details of the fundamentals, overtones, and combination bands; the highest fundamental frequency of (RbCs){sub 2} is only 40.26 cm{sup −1}. The present study unravels important details of the interactions between the widely investigated ultracold RbCs molecules.

  13. Emotion detection from text

    Science.gov (United States)

    Ramalingam, V. V.; Pandian, A.; Jaiswal, Abhijeet; Bhatia, Nikhar

    2018-04-01

    This paper presents a novel method based on concept of Machine Learning for Emotion Detection using various algorithms of Support Vector Machine and major emotions described are linked to the Word-Net for enhanced accuracy. The approach proposed plays a promising role to augment the Artificial Intelligence in the near future and could be vital in optimization of Human-Machine Interface.

  14. A full quantum analysis of the Stern–Gerlach experiment using the evolution operator method: analyzing current issues in teaching quantum mechanics

    International Nuclear Information System (INIS)

    Benítez Rodríguez, E; Aguilar, L M Arévalo; Martínez, E Piceno

    2017-01-01

    To the quantum mechanics specialists community it is a well-known fact that the famous original Stern–Gerlach experiment (SGE) produces entanglement between the external degrees of freedom (position) and the internal degree of freedom (spin) of silver atoms. Despite this fact, almost all textbooks on quantum mechanics explain this experiment using a semiclassical approach, where the external degrees of freedom are considered classical variables, the internal degree is treated as a quantum variable, and Newton's second law is used to describe the dynamics. In the literature there are some works that analyze this experiment in its full quantum mechanical form. However, astonishingly, to the best of our knowledge the original experiment, where the initial states of the spin degree of freedom are randomly oriented coming from the oven, has not been analyzed yet in the available textbooks using the Schrödinger equation (to the best of our knowledge there is only one paper that treats this case: Hsu et al (2011 Phys. Rev. A 83 012109)). Therefore, in this contribution we use the time-evolution operator to give a full quantum mechanics analysis of the SGE when the initial state of the internal degree of freedom is completely random, i.e. when it is a statistical mixture. Additionally, as the SGE and the development of quantum mechanics are heavily intermingled, we analyze some features and drawbacks in the current teaching of quantum mechanics. We focus on textbooks that use the SGE as a starting point, based on the fact that most physicist do not use results from physics education research, and comment on traditional pedagogical attitudes in the physics community. (paper)

  15. Utah Text Retrieval Project

    Energy Technology Data Exchange (ETDEWEB)

    Hollaar, L A

    1983-10-01

    The Utah Text Retrieval project seeks well-engineered solutions to the implementation of large, inexpensive, rapid text information retrieval systems. The project has three major components. Perhaps the best known is the work on the specialized processors, particularly search engines, necessary to achieve the desired performance and cost. The other two concern the user interface to the system and the system's internal structure. The work on user interface development is not only concentrating on the syntax and semantics of the query language, but also on the overall environment the system presents to the user. Environmental enhancements include convenient ways to browse through retrieved documents, access to other information retrieval systems through gateways supporting a common command interface, and interfaces to word processing systems. The system's internal structure is based on a high-level data communications protocol linking the user interface, index processor, search processor, and other system modules. This allows them to be easily distributed in a multi- or specialized-processor configuration. It also allows new modules, such as a knowledge-based query reformulator, to be added. 15 references.

  16. Development and full validation of an UPLC-MS/MS method for the quantification of the plant-derived alkaloid indirubin in rat plasma.

    Science.gov (United States)

    Jähne, Evelyn A; Sampath, Chethan; Butterweck, Veronika; Hamburger, Matthias; Oufir, Mouhssin

    2016-09-05

    An UPLC-MS/MS method for the quantification of indirubin in lithium heparinized rat plasma was developed and validated according to current international guidelines. Indirubin was extracted from rat plasma by using Waters Ostro™ pass-through sample preparation plates. The method was validated with a LLOQ of 5.00ng/mL and an ULOQ of 500ng/mL. The calibration curve was fitted by least-square quadratic regression, and a weighting factor of 1/X was applied. Recoveries of indirubin and I.S. were consistent and ≥75.5%. Stability studies demonstrated that indirubin was stable in lithium heparinized rat plasma for at least 3 freeze/thaw cycles, for 3h at RT, for 96h in the autosampler at 10°C, and for 84days when stored below -65°C. Preliminary pharmacokinetic (PK) data were obtained from Sprague Dawley rats after intravenous administration of indirubin (2mg/kg b.w.) and blood sampling up to 12h after injection. PK parameters were determined by non-compartmental analysis. Indirubin had a half-life (t1/2) of 35min, and a relatively high clearance (CL) of 2.71L/h/kg. Copyright © 2016 Elsevier B.V. All rights reserved.

  17. Validation of the Child Premorbid Intelligence Estimate method to predict premorbid Wechsler Intelligence Scale for Children-Fourth Edition Full Scale IQ among children with brain injury.

    Science.gov (United States)

    Schoenberg, Mike R; Lange, Rael T; Saklofske, Donald H; Suarez, Mariann; Brickell, Tracey A

    2008-12-01

    Determination of neuropsychological impairment involves contrasting obtained performances with a comparison standard, which is often an estimate of premorbid IQ. M. R. Schoenberg, R. T. Lange, T. A. Brickell, and D. H. Saklofske (2007) proposed the Child Premorbid Intelligence Estimate (CPIE) to predict premorbid Full Scale IQ (FSIQ) using the Wechsler Intelligence Scale for Children-4th Edition (WISC-IV; Wechsler, 2003). The CPIE includes 12 algorithms to predict FSIQ, 1 using demographic variables and 11 algorithms combining WISC-IV subtest raw scores with demographic variables. The CPIE was applied to a sample of children with acquired traumatic brain injury (TBI sample; n = 40) and a healthy demographically matched sample (n = 40). Paired-samples t tests found estimated premorbid FSIQ differed from obtained FSIQ when applied to the TBI sample (ps .02). The demographic only algorithm performed well at a group level, but estimates were restricted in range. Algorithms combining single subtest scores with demographics performed adequately. Results support the clinical application of the CPIE algorithms. However, limitations to estimating individual premorbid ability, including statistical and developmental factors, must be considered. (c) 2008 APA, all rights reserved.

  18. Concurrent myotomy and tunneling after establishment of a half tunnel instead of myotomy after establishment of a full tunnel: a more efficient method of peroral endoscopic myotomy.

    Science.gov (United States)

    Philips, George M; Dacha, Sunil; Keilin, Steve A; Willingham, Field F; Cai, Qiang

    2016-04-01

    Peroral endoscopic myotomy (POEM) is a time-consuming and challenging procedure. Traditionally, the myotomy is done after the submucosal tunnel has been completed. Starting the myotomy earlier, after submucosal tunneling is half completed (concurrent myotomy and tunneling), may be more efficient. This study aims to assess if the method of concurrent myotomy and tunneling may decrease the procedural time and be efficacious. This is a retrospective case series of patients who underwent modified POEM (concurrent myotomy and tunneling) or traditional POEM at a tertiary care medical center. Modified POEM or traditional POEM was performed at the discretion of the endoscopist in patients presenting with achalasia. The total procedural duration, myotomy duration, myotomy length, and time per unit length of myotomy were recorded for both modified and traditional POEM. Modified POEM was performed in 6 patients whose mean age (± standard deviation [SD]) was 58 ± 13.3 years. Of these, 5 patients had type II achalasia and 1 patient had esophageal dysmotility. The mean Eckardt score (± SD) before the procedure was 8.8 ± 1.3. The modified technique was performed in 47 ± 8 minutes, with 6 ± 1 minutes required per centimeter of myotomy and 3 ± 1 minutes required per centimeter of submucosal space. The Eckardt score was 3 ± 1.1 at 1 month and 3 ± 2.5 at 3 months. The procedure time for modified POEM was significantly shorter than that for traditional POEM. Modified POEM with short submucosal tunneling may be more efficient than traditional POEM with long submucosal tunneling, and outcomes may be equivalent over short-term follow-up. Long-term data and randomized controlled studies are needed to compare the clinical efficacy of modified POEM with that of the traditional method.

  19. Documents and legal texts

    International Nuclear Information System (INIS)

    2013-01-01

    This section reprints a selection of recently published legislative texts and documents: - Russian Federation: Federal Law No.170 of 21 November 1995 on the use of atomic energy, Adopted by the State Duma on 20 October 1995; - Uruguay: Law No.19.056 On the Radiological Protection and Safety of Persons, Property and the Environment (4 January 2013); - Japan: Third Supplement to Interim Guidelines on Determination of the Scope of Nuclear Damage resulting from the Accident at the Tokyo Electric Power Company Fukushima Daiichi and Daini Nuclear Power Plants (concerning Damages related to Rumour-Related Damage in the Agriculture, Forestry, Fishery and Food Industries), 30 January 2013; - France and the United States: Joint Statement on Liability for Nuclear Damage (Aug 2013); - Franco-Russian Nuclear Power Declaration (1 November 2013)

  20. Evaluation of bank filtration as a pretreatment method for the provision of hygienically safe drinking water in Norway: results from monitoring at two full-scale sites

    Science.gov (United States)

    Kvitsand, Hanne M. L.; Myrmel, Mette; Fiksdal, Liv; Østerhus, Stein W.

    2017-08-01

    Two case studies were carried out in central Norway in order to assess the performance of bank filtration systems in cold-climate fluvial aquifers relying on recharge from humic-rich surface waters with moderate microbial contamination. Three municipal wells and two surface-water sources at operative bank filtration systems were monitored for naturally occurring bacteriophages, fecal indicators, natural organic matter (NOM) and physico-chemical water quality parameters during a 4-month period. Aquifer passage effectively reduced the microorganism and NOM concentrations at both study sites. Bacteriophages were detected in 13 of 16 (81%) surface-water samples and in 4 of 24 (17%) well-water samples, and underwent 3 ± 0.3 log10 reduction after 50-80-m filtration and 20-30 days of subsurface passage. NOM reductions (color: 74-97%; dissolved organic carbon: 54-80%; very hydrophobic acids: 70%) were similar to those achieved by conventional water-treatment processes and no further treatment was needed. Both groundwater dilution and sediment filtration contributed to the hygienic water quality improvements, but sediment filtration appeared to be the most important process with regard to microbial and NOM reductions. A strengths-weaknesses-opportunities-threats analysis showed that bank filtration technology has a high potential as a pretreatment method for the provision of hygienically safe drinking water in Norway.