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Sample records for meloidogyne incognita secretome

  1. Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential.

    Directory of Open Access Journals (Sweden)

    Stéphane Bellafiore

    2008-10-01

    Full Text Available The root knot nematode, Meloidogyne incognita, is an obligate parasite that causes significant damage to a broad range of host plants. Infection is associated with secretion of proteins surrounded by proliferating cells. Many parasites are known to secrete effectors that interfere with plant innate immunity, enabling infection to occur; they can also release pathogen-associated molecular patterns (PAMPs, e.g., flagellin that trigger basal immunity through the nematode stylet into the plant cell. This leads to suppression of innate immunity and reprogramming of plant cells to form a feeding structure containing multinucleate giant cells. Effectors have generally been discovered using genetics or bioinformatics, but M. incognita is non-sexual and its genome sequence has not yet been reported. To partially overcome these limitations, we have used mass spectrometry to directly identify 486 proteins secreted by M. incognita. These proteins contain at least segmental sequence identity to those found in our 3 reference databases (published nematode proteins; unpublished M. incognita ESTs; published plant proteins. Several secreted proteins are homologous to plant proteins, which they may mimic, and they contain domains that suggest known effector functions (e.g., regulating the plant cell cycle or growth. Others have regulatory domains that could reprogram cells. Using in situ hybridization we observed that most secreted proteins were produced by the subventral glands, but we found that phasmids also secreted proteins. We annotated the functions of the secreted proteins and classified them according to roles they may play in the development of root knot disease. Our results show that parasite secretomes can be partially characterized without cognate genomic DNA sequence. We observed that the M. incognita secretome overlaps the reported secretome of mammalian parasitic nematodes (e.g., Brugia malayi, suggesting a common parasitic behavior and a possible

  2. Management of Meloidogyne incognita in nematodesusceptible ...

    African Journals Online (AJOL)

    Watermelon (Citrullus lanatus) cultivars are highly susceptible to the southern root-knot nematode (Meloidogyne incognita), with considerable yield losses when this nematode is not managed. Empirical evidence suggested that wild watermelon (Cucumis africanus) and wild cucumber (Cucumis myriocarpus) were highly ...

  3. Infectivity and reproduction of Meloidogyne incognita (Kofoid and ...

    African Journals Online (AJOL)

    Infectivity and reproduction of Meloidogyne incognita (Kofoid and White) Chitwood on African yam bean, Sphenostylis stenocarpa (Hochst Ex. A. Rich) Harms accessions as influenced by botanical soil amendments.

  4. Predicting Damage of Meloidogyne incognita on Watermelon

    Science.gov (United States)

    Xing, Lijuan; Westphal, Andreas

    2012-01-01

    Quantitative growth response of watermelon (Citrullus lanatus) sensitive to Meloidogyne incognita is poorly understood. Determination of soil population densities of second-stage juveniles (J2) of M. incognita with Baermann funnel extraction often is inaccurate at low soil temperatures. In greenhouse experiments, three sandy soils were inoculated with dilution series of population densities of eggs or J2 of M. incognita and planted in small containers to watermelon ‘Royal Sweet’ or subjected to Baermann funnel extraction. After five weeks of incubation in the greenhouse bioassay plants in egg-inoculated soils, gall numbers on watermelon roots related more closely to inoculated population densities than J2 counts after Baermann funnel extraction. In April 2004, perpendicularly-inserted tubes (45-cm diameter, 55-cm deep) served as microplots where two methyl bromide-fumigated sandy soils were inoculated with egg suspensions of M. incognita at 0, 100, 1,000 or 10,000 eggs/100 cm3 of soil in 15-cm depth. At transplanting of 4-week old watermelon seedlings, soils were sampled for the bioassay or for extraction of J2 by Baermann funnel. In the Seinhorst function of harvested biomass in relation to nematode numbers, decline of biomass with increasing population densities of M. incognita was accurately modeled by the inoculated eggs (R2 = 0.93) and by the counts of galls on the bioassay roots (R2 = 0.98); but poorly by J2 counts (R2 = 0.68). Threshold levels of watermelon top dry weight to M. incognita were 122 eggs/100 cm3 soil, 1.6 galls on bioassay roots, or 3.6 J2/100 cm3 of soil. Using the bioassay in early spring for predicting risk of nematode damage appeared useful in integrated pest management systems of watermelon. PMID:23482631

  5. Reproduction of root knot nematode (Meloidogyne incognita) on Bt ...

    African Journals Online (AJOL)

    SARAH

    2013-09-30

    Sep 30, 2013 ... ABSTRACT. Objective: The sedentary endoparasite Meloidogyne incognita is an important plant parasitic nematode that infects cotton causing significant yield losses. The objective of this study was to evaluate reproduction of M. incognita in Bt cotton (06Z604D), isoline (99M03) and HART 89M (local ...

  6. Water transport through tomato roots infected with Meloidogyne incognita.

    NARCIS (Netherlands)

    Dorhout, R.; Gommers, F.J.; Kollöffel, C.

    1991-01-01


    The effect of Meloidogyne incognita on water flow in tomato roots was investigated in rooted split-stem cuttings. Total water flow through infected root parts was significantly lower than through comparable uninfected parts. Total water uptake was correlated with total length of the root

  7. Nematicide and nematostatic potential of Curcuma longa on Meloidogyne incognita

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    Thaísa Muriel Mioranza

    2016-08-01

    Full Text Available The root knot nematodes can reduce yield potential of plants, thus requiring searching control methods that are effective and eco-friendly. The purpose of this study was to analyze the efficiency of turmeric rhizome aqueous extract (Curcuma longa on hatching, immobilization and mortality of juveniles of Meloidogyne incognita. A completely randomized design was used, with concentrations of 1%, 5%, 10% and 15% of turmeric extract and distilled water as a control treatment, with four replications. The juveniles of nematodes were directly exposed to turmeric extract for 24 h, while eggs were exposed during 15 days. The turmeric extract on J2 of Meloidogyne incognita, in vitro tests, promoted from the concentration of 10% total paralysis of nematodes and in the concentration of 15% more than 90% mortality. All tested concentrations caused reduction in juveniles hatching. Thereby, the turmeric aqueous extract has nematicidal potential against M. incognita, encouraging its study in the interaction plant-nematode.

  8. Interaction of Fusarium oxysporum with Meloidogyne incognita on Roselle

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    K. H. Ooi

    1999-12-01

    Full Text Available Forty isolates of Fusarium oxysporum were tested for their pathogenicity to roselle (Hibiscus sabdariffa L. var. sabdariffa in a plant house. The most virulent isolate was later used in a disease complex experiment with a root-knot nematode Meloidogyne incognita. Disease severity of roselle seedlings inoculated with a combination of fungus and nematode was higher than those inoculated with either fungus or nematode individually. Seedlings that were inoculated with fungus two weeks after nematode inoculation showed the highest disease severity compared to that inoculated with nematode two weeks after fungal inoculation or that inoculated simultaneously with both pathogens. It seems that root infections by M. incognita increased the colonization of roselle by F. oxysporum and subsequently caused higher damage to the roselle seedlings. The high wilt incidence in the presence of M. incognita and F. oxysporum may be due to the synergistic relationship between these two pathogens.

  9. Reação de crisântemos a Meloidogyne incognita, Meloidogyne javanica e Meloidogyne enterolobii

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    Lucivane Aparecida Gonçalves

    2014-03-01

    Full Text Available Este trabalho teve como objetivo avaliar a resistência de 14 variedades de crisântemos aos nematoides Meloidogyne incognita, M. javanica e M. enterolobii. O experimento foi conduzido em delineamento inteiramente casualizado, constando de 15 tratamentos e 4 repetições, por espécie de nematoide. Cada parcela foi constituída por uma planta por vaso, mantidas em casa de vegetação e inoculadas com 5.000 ovos e eventuais juvenis de M. incognita, M. javanica e M. enterolobii. Após 60 dias, os índices de massas de ovos, número de nematoides por grama de raiz e o fator de reprodução foram avaliados. As variedades apresentaram imunidade a M. incognita, M. javanica e M. enterolobii, exceto 'Capello Vermelho' e 'White Reagon', que foram respectivamente suscetível e resistente a M. incognita.

  10. Effects of Tomato Root Exudates on Meloidogyne incognita.

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    Guodong Yang

    Full Text Available Plant root exudates affect root-knot nematodes egg hatch. Chemicals in root exudates can attract nematodes to the roots or result in repellence, motility inhibition or even death. However, until recently little was known about the relationship between tomato root exudates chemicals and root-knot nematodes. In this study, root exudates were extracted from three tomato rootstocks with varying levels of nematode resistance: Baliya (highly resistant, HR, RS2 (moderately resistant, MR and L-402 (highly susceptible, T. The effects of the root exudates on Meloidogyne incognita (M. incognita egg hatch, survival and chemotaxis of second-stage juveniles (J2 were explored. The composition of the root exudates was analysed by gas chromatography/mass spectrometry (GC/MS prior to and following M. incognita inoculation. Four compounds in root exudates were selected for further analysis and their allopathic effect on M. incognita were investigated. Root exudates from each tomato rootstocks (HR, MR and T strains suppressed M. incognita egg hatch and increased J2 mortality, with the highest rate being observed in the exudates from the HR plants. Exudate from HR variety also repelled M. incognita J2 while that of the susceptible plant, T, was demonstrated to be attractive. The relative amount of esters and phenol compounds in root exudates from HR and MR tomato rootstocks increased notably after inoculation. Four compounds, 2,6-Di-tert-butyl-p-cresol, L-ascorbyl 2,6-dipalmitate, dibutyl phthalate and dimethyl phthalate increased significantly after inoculation. The egg hatch of M. incognita was suppressed by each of the compound. L-ascorbyl 2,6-dipalmitate showed the most notable effect in a concentration-dependent manner. All four compounds were associated with increased J2 mortality. The greatest effect was observed with dimethyl phthalate at 2 mmol·L-1. Dibutyl phthalate was the only compound observed to repel M. incognita J2 with no effect being detected in

  11. Development of virulence to Meloidogyne incognita on resistant pepper rootstocks

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    C. Ros Ibáñez

    2014-02-01

    Full Text Available The root-knot nematode (RKN Meloidogyne incognita is a major soil parasite of pepper crops in greenhouses in Southeast Spain. Due to the limitations of the use of soil fumigants, grafting plants on resistant rootstocks (R-rootstocks has become an important alternative to chemical nematicides. The repeated use of R-rootstocks can bring about the selection of virulent populations capable of overcoming resistance. We carried out a six-year investigation on resistant rootstocks in a naturally M. incognita infested greenhouse, and found that two successive years of growing plants grafted on R-rootstocks Atlante (ATL were sufficient to overcome resistance (galling index 1.5 and 5.6 in the first and second years respectively. A large variability was observed between several R-rootstocks. Two R-rootstocks (C19 and Snooker behaved like ATL while two others (Terrano and DRO 8801 were not infected by RKN. Laboratory studies with the same R-rootstocks, inoculated with two nematode isolates (avirulent and virulent against ATL confirmed the greenhouse results, indicating that some rootstocks may be infested by virulent populations and others may not. It suggests that different R-genes, which are differentially overcome by RKN, have been introgressed into the rootstocks. This may have consequences for the management of resistant rootstocks in the field.

  12. Development of virulence to Meloidogyne incognita on resistant pepper rootstocks

    Energy Technology Data Exchange (ETDEWEB)

    Ros-Ibanez, C.; Robertson, L.; Martinez-Lluch, M. C.; Cano-Garcia, A.; Lacasa-Plasencia, A.

    2014-06-01

    The root-knot nematode (RKN) Meloidogyne incognita is a major soil parasite of pepper crops in greenhouses in Southeast Spain. Due to the limitations of the use of soil fumigants, grafting plants on resistant rootstocks (R-rootstocks) has become an important alternative to chemical nematicides. The repeated use of R-rootstocks can bring about the selection of virulent populations capable of overcoming resistance. We carried out a six-year investigation on resistant rootstocks in a naturally M. incognita infested greenhouse, and found that two successive years of growing plants grafted on R-rootstocks Atlante (ATL) were sufficient to overcome resistance (galling index 1.5 and 5.6 in the first and second years respectively). A large variability was observed between several R-rootstocks. Two R-rootstocks (C19 and Snooker) behaved like ATL while two others (Terrano and DRO 8801) were not infected by RKN. Laboratory studies with the same R-rootstocks, inoculated with two nematode isolates (avirulent and virulent against ATL) confirmed the greenhouse results, indicating that some rootstocks may be infested by virulent populations and others may not. It suggests that different R-genes, which are differentially overcome by RKN, have been introgressed into the rootstocks. This may have consequences for the management of resistant rootstocks in the field. (Author)

  13. Behavioral differences of Heterodera glycines and Meloidogyne incognita infective juveniles exposed to root extracts in vitro

    Science.gov (United States)

    The in vitro behaviors of infective juveniles (J2) of Heterodera glycines and Meloidogyne incognita were compared in the presence and absence of plant root extracts. In an agar plate attraction-retention assay, H. glycines was 15-fold more responsive to a chemical attractant (CaCl2; P < 0.05) than w...

  14. Nematicidal activity of plant extracts against the root-knot nematode, Meloidogyne incognita

    NARCIS (Netherlands)

    Wiratno,; Taniwiryono, D.; Berg, van den J.H.J.; Riksen, J.A.G.; Rietjens, I.; Djiwanti, S.R.; Kammenga, J.E.; Murk, A.J.

    2009-01-01

    Nematicidal activity of extracts from plants was assayed against Meloidogyne incognita. In laboratory assays extracts from tobacco (Nicotiana tabacum L), clove (Syzygium aromaticum L), betelvine (Piper betle L), and sweet flag (Acorus calamus L) were most effective in killing the nematode, with an

  15. Reaction of Prunus Rootstocks to Meloidogyne incognita and M. arenaria in Spain.

    Science.gov (United States)

    Marull, J; Pinochet, J; Verdejo-Lucas, S; Soler, A

    1991-10-01

    Prunus rootstocks were evaluated for their reaction to Meloidogyne incognita and M. arenaria. Most rootstocks were peach-almond hybrids of Spanish origin. In one experiment three selections of Garfi x Nemared (G x N) and Hansen-5 were highly resistant to M. incognita, but four other rootstocks were susceptible showing high galling indices and population increases. In two experiments with M. arenaria, the hybrid selections G x N nos. 1 and 9 were immune, GF-305 and Hansen-5 were resistant, but nine other rootstocks expressed various degrees of susceptibility. All Spanish rootstocks were susceptible to both Meloidogyne species except for the three G x N selections. The root-knot nematode resistant peach Nemared used as a male parent with Garfi was found to transmit a high degree of resistance to M. incognita and immunity to M. arenaria. Progenies of P. davidiana (Ga x D no. 3), a known source of resistance to root-knot nematodes, were susceptible.

  16. Evaluation of roselle (Hibiscus sabdariffa) leaf and pomegranate (Punica granatum) fruit rind for activity against Meloidogyne incognita

    Science.gov (United States)

    Pomegranate (Punica granatum) fruit and roselle (Hibiscus sabdariffa) leaves have been used in traditional medicine, including as anthelmintics. Methanolic extracts from these plants were investigated for activity against the southern root-knot nematode (RKN) Meloidogyne incognita. Dried, ground p...

  17. Development of a sweet cherry pepper line with resistance to the southern root-knot nematode Meloidogyne incognita

    Science.gov (United States)

    The southern root-knot nematode (Meloidogyne incognita) is a major pathogen of pepper (Capsicum spp.), causing significant yield losses in heavily infected plants. The N-gene confers resistance to M. incognita, and has been successfully used to mitigate nematode damage in specific pepper varieties f...

  18. Expression of Phenylalanine Ammonia Lyase Genes in Maize Lines Differing in Susceptibility to Meloidogyne incognita

    OpenAIRE

    Starr, J. L.; Yang, W.; Yan, Y.; Crutcher, F.; Kolomiets, M.

    2014-01-01

    Maize is a well-known host for Meloidogyne incognita, and there is substantial variation in host status among maize genotypes. In previous work it was observed that nematode reproduction increased in the moderately susceptible maize inbred line B73 when the ZmLOX3 gene from oxylipid metabolism was knocked out. Additionally, in this mutant line, use of a nonspecific primer for phenyl alanine ammonialyase (PAL) genes indicated that expression of these genes was reduced in the mutant maize plant...

  19. Eksplorasi Bakteri yang Berpotensi Sebagai Agens Pengendali Hayati Fusarium solani dan Meloidogyne incognita pada Lada

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    Citra Mayang Wardhika

    2014-12-01

    Full Text Available Indonesia is major producer of black pepper (Piper nigrum L., however the pepper production has been decreasing in the last decades. Black pepper yellowings caused by Fusarium solani and Meloidogyne incognita is one of the most important disease on pepper causing the decrease of pepper production. This research was aimed at the selection of potential bacteria as a biological control agents of F. solani and M. incognita on black pepper. The bacteria were isolated from rhizospheric soil of healthy plant. To determine the ability of biological agents, they were tested against F. solani and M. incognita. Seven isolates fluorescent pseudomonads, 19 isolates of Bacillus spp. and 21 bacterial isolates which were yet to be identified were isolated from soil rhizosphere. The results show that there are 5 antagonist bacterial isolates which were able to inhibit the growth of F. solani but so far no bacteria that caused cell lysis to M. incognita larvae was found.     Indonesia merupakan negara produsen lada yang pada beberapa waktu terakhir ini telah mengalami penurunan produksi. Penyakit kuning yang disebabkan oleh Fusarium solani dan Meloidogyne incognita merupakan salah satu penyebab terjadinya penurunan tersebut. Penelitian bertujuan untuk menyeleksi bakteri yang berpotensi sebagai pengendali hayati Fusarium solani dan Meloidogyne incognita pada lada. Isolasi bakteri dilakukan dari tanah rizosfer pertanaman lada sehat dan selanjutnya untuk mengetahui kemampuan agens hayati dilakukan uji antagonis terhadap F. solani dan M. incognita. Hasil isolasi dari rizosfer pertanaman didapatkan 7 isolat bakteri kelompok Pseudomonad fluoresen, 19 isolat bakteri Bacillus spp. dan 21 isolat bakteri yang belum diidentifikasi lebih lanjut. Hasil uji antagonis menunjukkan bahwa ada 5 isolat bakteri yang mampu menghambat pertumbuhan F. solani namun belum ditemukan adanya bakteri yang mampu menghambat pertumbuhan M. incognita.

  20. Tagetes Patula y T Erecta para Controlar Meloidogyne Incognita y Hellcotylenchus Dihystera

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    Vergel German

    1979-06-01

    Full Text Available An experiment was carried out under greenhouse conditions to test the control of Meloidogyne incognita and Helicotylenchus dihystera by Tagetes patula nana var. Petit Harmony and T. erecta var. Orange. For each of these nematode species, the population levels tested were considered as high, moderate and low. These populations were obtained mixing infested soil with sterilized one. Both Tagetes species gave satisfactory control. The decrease in population of nematodes in comparison with tomato was ranged from 15.5 to 136.3% depencing on the nematode species and on its population level on the soil No significate difference was found between the two Tagetes species. There was a greater decrease in population density for M. incognita than for H. dihystera; this was particulary true at the lowest population levels tested. In the case of M. incognita, an inverse relation was found between degree of control and population density of these nematodes in soil.

  1. Weed Hosts of Meloidogyne arenaria and M. incognita Common in Tobacco Fields in South Carolina.

    Science.gov (United States)

    Tedford, E C; Fortnum, B A

    1988-10-01

    Thirty-two weed species common in South Carolina and one cultivar of tobacco were evaluated as hosts of Meloidogyne arenaria race 2 and M. incognita race 3 in the greenhouse. Egg mass production and galling differed (P Rumex crispus, Amaranthus hybridus, Ambrosia artemisiifolia, lpomoea hederacea var. integriuscula, Setaria lutescens, Sida spinosa, Portulaca oleracea, and Rumex acetosella were moderate hosts. Taraxacum officinale, Ipomoea hederacea, Cyperus esculentus, Cynodon dactyIon, Echinochloa crus-galli, Eleusine indica, Sorghum halepense, Setaria viridis, Digitaria sanguinalis, and Datura stramonium were poor hosts for M. arenaria. Amaranthus palmeri, Amaranthus hybridus, Chenopodium album, Euphorbia maculata, Setaria lutescens, Vicia villosa, Sida spinosa, Rumex crispus, and Portulaca oleracea were moderate hosts and Ipomoea hederacea var. integriuscula, Xanthium strumarium, Cyperus esculentus, Cynodon dactylon, Paspalum notatum, Eleusine indica, Setaria viridis, and Rumex acetosella were poor hosts for M. incognita. None of the above were good hosts for M. incognita. Tobacco 'PD4' supported large numbers of both nematode species.

  2. Interaction between Meloidogyne incognita and Agrobacterium tumefaciens or Fusarium oxysporum f. sp. lycopersici on Tomato

    Science.gov (United States)

    El-Sherif, Ahmed G.; Elwakil, M. A.

    1991-01-01

    Agrobacterium tumefaciens stimulated and Fusarium oxysporum f. sp. lycopersici inhibited development and reproduction of Meloidogyne incognita when applied to the opposite split root of tomato, Lycopersicon esculentum cv. Tropic, plants. The lowest rate of nematode reproduction occurred after 2,000 juveniles were applied and the fungus was present in the opposite split root. The effects of all three pathogens alone on the growth of roots and shoots of tomato plants were evident, but M. incognita had a greater effect alone than did either of the other pathogens. The length of split roots was reduced by the infection of M. incognita and A. tumefaciens or F. oxysporum f. sp. lycopersici. The number of galls induced by nematodes on roots was higher where the bacterium was applied and lower where the fungus was applied to the opposite split root. PMID:19283119

  3. Resistance of sweet potato clones to meloidogyne incognita races 1 and 3

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    Jorge Augusto Assis Gomes

    2015-09-01

    Full Text Available The objective of this study was to evaluate sweet potato clones for resistance to root-knot nematode, Meloidogyne incognita races 1 and 3. For each nematode physiological race, a greenhouse experiment was set up in a randomized block experimental design with three replications and six plants per plot. Fifty-eight sweet potato clones from the UFVJM germplasm bank were evaluated, plus five commercial cultivars (Brazlândia Rosada, Brazlândia Branca, Palmas, Princesa and Coquinho, plus the cv. Santa Clara tomato (susceptible to Meloidogyne spp.. Stems were planted in 72-cell expanded polystyrene trays, filled with commercial substrate and inoculated with the pathogen thirty days after planting. Forty-five days after inoculation, the eggs were extracted, counted, and later evaluated. Resistance level classification was performed based on reproduction factor (RF and reproduction index (RI. Among the 63 analyzed clones, a percentage of 78% were classified as resistant to M. incognita race 1.79% to race 3 and 67% showed multiple resistance to both M. incognita races.

  4. Resistance of sweet potato clones to meloidogyne incognita races 1 and 3

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    Jorge Augusto Assis Gomes

    2015-01-01

    Full Text Available The objective of this study was to evaluate sweet potato clones for resistance to root-knot nematode, Meloidogyne incognita races 1 and 3. For each nematode physiological race, a greenhouse experiment was set up in a randomized block experimental design with three replications and six plants per plot. Fifty-eight sweet potato clones from the UFVJM germplasm bank were evaluated, plus five commercial cultivars (Brazlândia Rosada, Brazlândia Branca, Palmas, Princesa and Coquinho, plus the cv. Santa Clara tomato (susceptible to Meloidogyne spp.. Stems were planted in 72-cell expanded polystyrene trays, filled with commercial substrate and inoculated with the pathogen thirty days after planting. Forty-five days after inoculation, the eggs were extracted, counted, and later evaluated. Resistance level classification was performed based on reproduction factor (RF and reproduction index (RI. Among the 63 analyzed clones, a percentage of 78% were classified as resistant to M. incognita race 1.79% to race 3 and 67% showed multiple resistance to both M. incognita races.

  5. Host status of progenies of yellow passion fruit to Meloidogyne incognita race 2

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    Roxana Stefane Mendes Nascimento

    2016-07-01

    Full Text Available The host status of eighteen progenies (CRP 01-12 to CRP 16-12, CRP 19-12 and CRP 20-12 and two cultivars (FB 200 Yellow Master and FB 300 Araguari of yellow passion fruit to Meloidogyne incognita race 2 was evaluated in a greenhouse experiment. The height and the biomass of the plants, besides the numbers of galls, eggs and second-stage juveniles in roots and soil were assessed after 70 days of cultivation of the genotypes and tomato (control in plastic pots with 2 kg of soil infested with 5,000 eggs of the nematode. The reproduction factor of the pathogen (RF = Final population/Initial population was calculated for classifying the genotypes as immune (RF = 0, resistant (RF < 1 or susceptible (RF ≥ 1. The cultivar FB 200 is resistant to M. incognita race 2 and can be cultivated in areas infested with this nematode.

  6. Penetration, Post-penetration Development, and Reproduction of Meloidogyne incognita on Cucumis melo var. texanus.

    Science.gov (United States)

    Faske, T R

    2013-03-01

    Cucumis melo var. texanus, a wild melon commonly found in the southern United States and two accessions, Burleson Co. and MX 1230, expressed resistance to Meloidogyne incognita in preliminary experiments. To characterize the mechanism of resistance, we evaluated root penetration, post-penetration development, reproduction, and emigration of M. incognita on these two accessions of C. melo var. texanus. Additionally, we evaluated 22 accessions of C. melo var. texanus for their reaction against M. incognita in a greenhouse experiment. Fewer (P ≤ 0.05) J2 penetrated the root system of C. melo var. texanus accessions (Burleson Co. and MX 1230) and C. metuliferus (PI 482452) (resistant control), 7 days after inoculation (DAI) than in C. melo 'Hales Best Jumbo' (susceptible control). A delayed (P ≤ 0.05) rate of nematode development was observed at 7, 14, and 21 DAI that contributed to lower (P ≤ 0.05) egg production on both accessions and C. metuliferus compared with C. melo. Though J2 emigration was observed on all Cucumis genotypes a higher (P ≤ 0.05) rate of J2 emigration was observed from 3 to 6 DAI on accession Burleson Co. and C. metuliferus than on C. melo. The 22 accessions of C. melo var. texanus varied relative to their reaction to M. incognita with eight supporting similar levels of nematode reproduction to that of C. metuliferus. Cucumis melo var. texanus may be a useful source of resistance against root-knot nematode in melon.

  7. Control Effect of Sudan Grass on Root-Knot Nematode, Meloidogyne incognita, in Cucumber and Lettuce Greenhouses

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    Hyeong-Hwan Kim

    2014-12-01

    Full Text Available The effect of biological control of the root-knot nematode, Meloidogyne incognita, on cucumber and lettuce was evaluated with green manure crop species in greenhouse. Nematicidal effect of sudan grass cultivation in cucumber greenhouse was comparable to that of chemical treatment with fosthiazate GR, showing the high activity of 88.6%. Sudan grass cultivation in lettuce greenhouse significantly reduced the number of M. incognita in soil, showing 93.5% of nematiidal activity. In addition, since growth of sudan grass was superior to other green manure crop species, it is considered that cultivation of sudan grass is proper to control M. incognita in greenhouse.

  8. Effect of extracts from three plant species on nematode Meloidogyne incognita (Kofoid and White Chitwood

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    Tulio F. Solano Castillo

    2014-01-01

    Full Text Available Nematodes of Meloidogyne genus are a serious problem for tomato production in the province of Loja, Ecuador. Because of the negative side effects of chemical nematicides, to solve this problem it is necessary look for alternatives. This work aimed to study the effect of ethanolic extracts from Lonchocarpus nicou (Aubl.,Piscidia carthagenensis Jacq. and Thevetia peruviana (Pers. K. Schum., in Meloidogyne incognita control, “invitro ” and glasshouse conditions, on tomato plants. The extracts induced a significant mortality, “ in vitro”, on juveniles. This effect was related with the source and concentrations of the extracts. In tomato growing in glasshouse, it was observed an appreciable reduction in the root gall index and in the nematode populations in soil, related with the plant species and the concentration used, too.

  9. Evaluation of Dry Ice as a Potential Cryonematicide for Meloidogyne incognita in Soil

    OpenAIRE

    Wergin, William P.; Yaklich, Robert W.; Chitwood, David J.; Erbe, Eric F.

    1999-01-01

    Solid CO₂ (dry ice) was added to pots containing soil that was infested either with eggs of the root-knot nematode, Meloidogyne incognita, or with tomato (Lycopersicon esculentum 'Rutgers') root fragments that were infected with various stages of the nematode. Two hours after dry ice was added, thermocouples in the soil recorded temperatures ranging from -15 °C to -59 °C. One day after treatment with the dry ice, the temperature of the soil was allowed to equilibrate with that of the greenhou...

  10. Studies on the interactions of Meloidogyne incognita, Radopholus similis and Fusarium solani on black pepper (Piper nigrum L.)

    NARCIS (Netherlands)

    Mustika, I.

    1990-01-01

    This study on the interactions between various cultivars of the black pepper plant (Piper nigrum L. ) and three of its pathogens, Meloidogyne Incognita (Kofoid & White) , Radopholus similis (Cobb) , Thorne and

  11. Expression of Phenylalanine Ammonia Lyase Genes in Maize Lines Differing in Susceptibility to Meloidogyne incognita.

    Science.gov (United States)

    Starr, J L; Yang, W; Yan, Y; Crutcher, F; Kolomiets, M

    2014-12-01

    Maize is a well-known host for Meloidogyne incognita, and there is substantial variation in host status among maize genotypes. In previous work it was observed that nematode reproduction increased in the moderately susceptible maize inbred line B73 when the ZmLOX3 gene from oxylipid metabolism was knocked out. Additionally, in this mutant line, use of a nonspecific primer for phenyl alanine ammonialyase (PAL) genes indicated that expression of these genes was reduced in the mutant maize plants whereas expression of several other defense related genes was increased. In this study, we used more specific gene primers to examine the expression of six PAL genes in three maize genotypes that were good, moderate, and poor hosts for M. incognita, respectively. Of the six PAL genes interrogated, two (ZmPAL3 and ZmPAL6) were not expressed in either M. incognita-infected or noninfected roots. Three genes (ZmPAL1, ZmPAL2, and ZmPAL5) were strongly expressed in all three maize lines, in both nematode-infected and noninfected roots, between 2 and 16 d after inoculation (DAI). In contrast, ZmPAL4 was most strongly expressed in the most-resistant maize line W438, was not detected in the most-susceptible maize line CML, and was detected only at 8 DAI in the maize line B73 that supported intermediate levels of reproduction by M. incognita. These observations are consistent with at least one PAL gene playing a role in modulating host status of maize toward M. incognita and suggest a need for additional research to further elucidate this association.

  12. Differential Metabolic Profiles during the Developmental Stages of Plant-Parasitic Nematode Meloidogyne incognita

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    Parthiban Subramanian

    2017-06-01

    Full Text Available Meloidogyne incognita is a common root-knot nematode with a wide range of plant hosts. We aimed to study the metabolites produced at each stage of the nematode life cycle to understand its development. Metabolites of Meloidogyne incognita were extracted at egg, J2, J3, J4, and female stages and 110 metabolites with available standards were quantified using CE-TOF/MS. Analyses indicated abundance of stage-specific metabolites with the exception of J3 and J4 stages which shared similar metabolic profiles. The egg stage showed increased abundance in glycolysis and energy metabolism related metabolites while the J2 metabolites are associated with tissue formation, motility, and neurotransmission. The J3 and J4 stages indicated amino acid metabolism and urea cycle- related metabolites. The female stage was characterized with polyamine synthesis, antioxidant activity, and synthesis of reproduction related metabolites. Such metabolic profiling helps us understand the dynamic physiological changes related to each developmental stage of the root-knot nematode life cycle.

  13. Elucidation of the compatible interaction between banana and Meloidogyne incognita via high-throughput proteome profiling.

    Directory of Open Access Journals (Sweden)

    Aisyafaznim Al-Idrus

    Full Text Available With a diverse host range, Meloidogyne incognita (root-knot nematode is listed as one of the most economically important obligate parasites of agriculture. This nematode species establishes permanent feeding sites in plant root systems soon after infestation. A compatible host-nematode interaction triggers a cascade of morphological and physiological process disruptions of the host, leading to pathogenesis. Such disruption is reflected by altered gene expression in affected cells, detectable using molecular approaches. We employed a high-throughput proteomics approach to elucidate the events involved in a compatible banana- M. incognita interaction. This study serves as the first crucial step in developing natural banana resistance for the purpose of biological-based nematode management programme. We successfully profiled 114 Grand naine root proteins involved in the interaction with M. incognita at the 30th- and 60th- day after inoculation (dai. The abundance of proteins involved in fundamental biological processes, cellular component organisation and stress responses were significantly altered in inoculated root samples. In addition, the abundance of proteins in pathways associated with defence and giant cell maintenance in plants such as phenylpropanoid biosynthesis, glycolysis and citrate cycle were also implicated by the infestation.

  14. Dose assessment of HeberNem to control of Meloidogyne incognita Chitwood in greenhouses

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    Mario Fleitas Díaz

    2016-02-01

    Full Text Available In the houses of protected crops Agricultural Company República Dominicana, Carlos Manuel de Céspedes municipality, Camagüey, an experiment was developed to evaluate different doses of bionematicide HeberNem in controlling the nematode Meloidogyne incognita Chitwood and his participation in the growth and development of the tomato (Solanum lycopersicum crop, the experimental design was in randomized blocks, the test was composed of 8 treatments replicated twice, evaluating a total of 40 plants for each treatment which were measured: plant height, stem diameter the number of leaflets, the number of clusters per plant, number of flowers per cluster and number of fruits per bunch, they were made weekly. Also at the end of the campaign took root degree determined according to the scale indicated by Zeck, (1971. Data were analyzed using analysis of variance and determined the levels of statistical significance at 5%, by dócima Tukey multiple range. We found an inverse relationship between the parameters of growth and development weighed against the presence of M. incognita Chitwood. At doses of 8 l / ha, 12 l / ha and 16 l / ha were achieved better results in controlling the nematode M. incognita Chitwood.

  15. Nematicidal activity of 2-thiophenecarboxaldehyde and methylisothiocyanate from caper (Capparis spinosa) against Meloidogyne incognita.

    Science.gov (United States)

    Caboni, Pierluigi; Sarais, Giorgia; Aissani, Nadhem; Tocco, Graziella; Sasanelli, Nicola; Liori, Barbara; Carta, Annarosa; Angioni, Alberto

    2012-08-01

    New pesticides based on plant extracts have recently gained interest in the development of nontoxic crop protection chemicals. Numerous research studies are focused on the isolation and identification of new active compounds derived from plants. In this manuscript we report about the use of the Mediterranean species Capparis spinosa as a potent natural nematicidal agent against the root knot nematodes Meloidogyne incognita. Leaves, stems, and caper buds of Capparis spinosa were used to obtain their methanol extracts (LME, SME, BME) that were successively in vitro tested against second stage nematode juveniles (J2). In terms of paralysis induction, the methanol extract of the stem part (SME) was found more effective against M. incognita and then the caper methanol buds and leaves extracts. The chemical composition analysis of the extracts carried out by GC/MS and LC/MS techniques showed that methylisothiocyanate was the main compound of SME. The EC50 for SME after 3 days of immersion was 215 ± 36 mg/L. The constituent components of SME such as 2-thiophenecarboxaldehyde and methylisothiocyanate were successively in vitro tested for their nematicidal activity against J2. Both compounds induced paralysis on root knot nematodes ranking first (EC50 = 7.9 ± 1.6, and 14.1 ± 1.9 mg/L respectively) for M. incognita. Moreover, 2-thiophenecarboxaldehyde showed a strong fumigant activity.

  16. Chemical Composition and Nematicidal Activity of Essential Oil of Agastache rugosa against Meloidogyne incognita

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    Zhi Wei Deng

    2013-04-01

    Full Text Available The aim of this research was to determine the chemical composition and nematicidal activity of essential oil of Agastache rugosa flowering aerial parts against the root knot nematode, Meloidogyne incognita, and to isolate and identify any nematicidal constituents from the essential oil. The essential oil of A. rugosa aerial parts was obtained by hydrodistillation and analyzed by GC-FID and GC-MS. A total of 37 components of the essential oil were identified, with the principal compounds being methyleugenol (50.51%, estragole (8.55%, and eugenol (7.54%, followed by thymol (3.62%, pulegone (2.56%, limonene (2.49% and caryophyllene (2.38%. Based on bioactivity-guided fractionation, the three active constituents were isolated from the essential oil and identified as methyleugenol, estragole and eugenol. The essential oil of A. rugosa exhibited strong nematicidal activity against M. incognita, with a LC50 value of 47.3 μg/mL. The components eugenol (LC50 = 66.6 μg/mL and methyleugenol (LC50 = 89.4 μg/mL exhibited stronger nematicidal activity against M. incognita (LC50 = 185.9 μg/mL. The results indicate that the essential oil of A. rugosa aerial parts and its constituent compounds have potential for development into natural nematicides for control of the root knot nematode.

  17. Arthrobotrys oligospora-mediated biological control of diseases of tomato (Lycopersicon esculentum Mill.) caused by Meloidogyne incognita and Rhizoctonia solani.

    Science.gov (United States)

    Singh, U B; Sahu, A; Sahu, N; Singh, R K; Renu, S; Singh, D P; Manna, M C; Sarma, B K; Singh, H B; Singh, K P

    2013-01-01

    To study the biocontrol potential of nematode-trapping fungus Arthrobotrys oligospora in protecting tomato (Lycopersicon esculentum Mill.) against Meloidogyne incognita and Rhizoctonia solani under greenhouse and field conditions. Five isolates of the nematode-trapping fungus Arthrobotrys oligospora isolated from different parts of India were tested against Meloidogyne incognita and Rhizoctonia solani in tomato (Lycopersicon esculentum Mill.) plants grown under greenhouse and field conditions. Arthrobotrys oligospora-treated plants showed enhanced growth in terms of shoot and root length and biomass, chlorophyll and total phenolic content and high phenylalanine ammonia lyase activity in comparison with M. incognita- and R. solani-inoculated plants. Biochemical profiling when correlated with disease severity and intensity in A. oligospora-treated and untreated plants indicate that A. oligospora VNS-1 offered significant disease reduction in terms of number of root galls, seedling mortality, lesion length, disease index, better plant growth and fruit yield as compared to M. incognita- and R. solani-challenged plants. The result established that A. oligospora VNS-1 has the potential to provide bioprotection agents against M. incognita and R. solani. Arthrobotrys oligospora can be a better environment friendly option and can be incorporated in the integrated disease management module of crop protection. Application of A. oligospora not only helps in the control of nematodes but also increases plant growth and enhances nutritional value of tomato fruits. Thus, it proves to be an excellent biocontrol as well as plant growth promoting agent. © 2012 The Society for Applied Microbiology.

  18. Extracellular Protease of Pseudomonas fluorescens CHA0, a Biocontrol Factor with Activity against the Root-Knot Nematode Meloidogyne incognita

    OpenAIRE

    Siddiqui, Imran Ali; Haas, Dieter; Heeb, Stephan

    2005-01-01

    In Pseudomonas fluorescens CHA0, mutation of the GacA-controlled aprA gene (encoding the major extracellular protease) or the gacA regulatory gene resulted in reduced biocontrol activity against the root-knot nematode Meloidogyne incognita during tomato and soybean infection. Culture supernatants of strain CHA0 inhibited egg hatching and induced mortality of M. incognita juveniles more strongly than did supernatants of aprA and gacA mutants, suggesting that AprA protease contributes to biocon...

  19. Extracellular Protease of Pseudomonas fluorescens CHA0, a Biocontrol Factor with Activity against the Root-Knot Nematode Meloidogyne incognita

    Science.gov (United States)

    Siddiqui, Imran Ali; Haas, Dieter; Heeb, Stephan

    2005-01-01

    In Pseudomonas fluorescens CHA0, mutation of the GacA-controlled aprA gene (encoding the major extracellular protease) or the gacA regulatory gene resulted in reduced biocontrol activity against the root-knot nematode Meloidogyne incognita during tomato and soybean infection. Culture supernatants of strain CHA0 inhibited egg hatching and induced mortality of M. incognita juveniles more strongly than did supernatants of aprA and gacA mutants, suggesting that AprA protease contributes to biocontrol. PMID:16151170

  20. Resistance of Commercial Tomato Cultivars to Meloidogyne arenaria and M. incognita

    Directory of Open Access Journals (Sweden)

    Donggeun Kim

    2013-03-01

    Full Text Available Root-knot nematodes (Meloidogyne spp. are among the main pathogens of greenhouse crops worldwide.Plant resistance is currently the method of choice for controlling these pests. To select resistant tomato againsttwo common species of root-knot nematodes, M. incognita and M. arenaria, 36 commercial tomato(Lycopersicon esculentum Mill. cultivars were screened. Seventeen tomato cultivars were resistant to bothroot-knot nematodes: six in cherry tomato, ‘Tenten’, ‘Cadillac’, ‘Cutti’, ‘Sweet’, ‘Ppotto’, ‘Lycopin-9’, eightin globe tomato, ‘Lovely 240’, ‘Dotaerang Dia’, ‘Cupirang’, ‘Dotaerang Master’, ‘Super Dotaerang’,‘Dotaerang Season’, ‘Miroku’, ‘Hoyong’, and three in root stock, ‘Special’, ‘Fighting’, and ‘Magnet’.

  1. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

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    Olga A Postnikova

    Full Text Available Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp. are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69 and susceptible (cv. Lahontan alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with

  2. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Postnikova, Olga A; Hult, Maria; Shao, Jonathan; Skantar, Andrea; Nemchinov, Lev G

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69) and susceptible (cv. Lahontan) alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with respect to resistance

  3. GAMMA IRRADIATION OF SUGAR BEET SEEDS INDUCED PLANT RESISTANCE TO ROOT-KNOT NEMATODE MELOIDOGYNE INCOGNITA

    International Nuclear Information System (INIS)

    ABD EL FATTAH, A.I.; KAMEL, H.A.; EL-NAGDI, W.M.A.

    2008-01-01

    The main objective of this study was to investigate the effect of irradiation of sugar beet seeds on the plant resistance to root-knot nematode Meloidogyne incognita infection in addition to some morphological parameters, biochemical components and root technological characters. Relative to control (non-irradiated seeds), the obtained data showed that, all doses except 10 Gy significantly increased root length of un inoculated plants and the most effective dose was 200 Gy. All doses significantly decreased root diameter except 50 and 100 Gy. The 10 and 400 Gy significantly reduced root fresh weight while 50, 100 and 200 Gy caused non-significant increase. All doses significantly increased root fresh weight/dry weight than control. There was non-significant effect on the morphological parameters of the plants germinated from gamma irradiated seeds and inoculated with Meloidogyne incognita. Total chlorophyll of seed irradiated and un inoculated plants were significantly reduced by all doses except 200 Gy. All doses of gamma radiation caused non-significant decrease in the total chlorophyll of the infected plants. In un inoculated plants, a significant reduction in the total phenol was occurred due to all doses of gamma radiation. In contrast, in inoculated plants, 10 and 25 Gy caused significant reduction in the total phenol while 50 and 400 Gy caused significant increase in the total phenol.Significant increase in sucrose % was observed due to 10 Gy in the un inoculated plants. The 400 Gy caused significant decrease while other doses caused non-significant decrease in the sucrose %. In the inoculated plants, 50, 100 and 400 Gy caused significant increase in sucrose %. All doses significantly increased total soluble salts percent (TSS %) of either inoculated or un inoculated plants. Purity % was increased by all doses in the inoculated plants.The number of galls and egg masses were reduced gradually by increasing gamma doses and 100 Gy caused the highest reduction 89

  4. Identification of Nematicidal Constituents of Notopterygium incisum Rhizomes against Bursaphelenchus xylophilus and Meloidogyne incognita

    Directory of Open Access Journals (Sweden)

    Gai Liu

    2016-09-01

    Full Text Available During a screening program for new agrochemicals from Chinese medicinal herbs, the ethanol extract of Notopterygium incisum rhizomes was found to possess strong nematicidal activity against the two species of nematodes, Bursaphelenchus xylophilus and Meloidogyne incognita. Based on bioactivity-guided fractionation, the four constituents were isolated from the ethanol extract and identified as columbianetin, falcarindiol, falcarinol, and isoimperatorin. Among the four isolated constituents, two acetylenic compounds, falcarindiol and falcarinol (2.20–12.60 μg/mL and 1.06–4.96 μg/mL, respectively exhibited stronger nematicidal activity than two furanocoumarins, columbianetin, and isoimperatorin (21.83–103.44 μg/mL and 17.21–30.91 μg/mL, respectively against the two species of nematodes, B. xylophilus and M. incognita. The four isolated constituents also displayed phototoxic activity against the nematodes. The results indicate that the ethanol extract of N. incisum and its four isolated constituents have potential for development into natural nematicides for control of plant-parasitic nematodes.

  5. Identification of Nematicidal Constituents of Notopterygium incisum Rhizomes against Bursaphelenchus xylophilus and Meloidogyne incognita.

    Science.gov (United States)

    Liu, Gai; Lai, Daowan; Liu, Qi Zhi; Zhou, Ligang; Liu, Zhi Long

    2016-09-23

    During a screening program for new agrochemicals from Chinese medicinal herbs, the ethanol extract of Notopterygium incisum rhizomes was found to possess strong nematicidal activity against the two species of nematodes, Bursaphelenchus xylophilus and Meloidogyne incognita. Based on bioactivity-guided fractionation, the four constituents were isolated from the ethanol extract and identified as columbianetin, falcarindiol, falcarinol, and isoimperatorin. Among the four isolated constituents, two acetylenic compounds, falcarindiol and falcarinol (2.20-12.60 μg/mL and 1.06-4.96 μg/mL, respectively) exhibited stronger nematicidal activity than two furanocoumarins, columbianetin, and isoimperatorin (21.83-103.44 μg/mL and 17.21-30.91 μg/mL, respectively) against the two species of nematodes, B. xylophilus and M. incognita. The four isolated constituents also displayed phototoxic activity against the nematodes. The results indicate that the ethanol extract of N. incisum and its four isolated constituents have potential for development into natural nematicides for control of plant-parasitic nematodes.

  6. Characterization of Streptomyces netropsis Showing a Nematicidal Activity against Meloidogyne incognita

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    Ja Yeong Jang

    2015-06-01

    Full Text Available Control of nematode has become difficult owing to the restricted use of effective soil fumigant, methyl bromide, and other non-fumigant nematicides. Therefore, it is urgently necessary to develop microbial nematicide to replace chemical nematicides. In this study, the 50% aqueous methanol extraction solution of fermentation broths of 2,700 actinomycete strains were tested for their nematicidal activity against second stage of juveniles (J2s of Meloidogyne incognita. As the results, only the 50% aqueous methanol extraction solution of AN110065, at 20% equivalent to 10% fermentation broth, showed strong nematicidal activity with 78.9% of mortality 24 h after treatment and 94.1% of mortality at 72 h. The 16S rRNA gene sequencing showed that the strain sequence was 99.78% identical to Streptomyces netropsis. The extract of S. netropsis AN110065 fermentation broth was successively partitioned with ethyl acetate and butanol and then the ethyl acetate, butanol and water layers were investigated for their nematicidal activity against the M. incognita. At 1,000 mg/ml, ethyl acetate layer showed the strongest activity of 83.5% of juvenile mortality 72 h after treatment. The pot experiment using the fermentation broth of AN110065 on tomato plant against M. incognita displayed that it evidently suppressed gall formation at a 10-fold diluent treatment. The tomato plants treated with the fermentation broth of S. netropsis AN110065 did not show any phytotoxicity. The results suggest that S. netropsis AN110065 has a potential to serve as microbial nematicide in organic agriculture.

  7. Gene expression analysis in Musa acuminata during compatible interactions with Meloidogyne incognita.

    Science.gov (United States)

    Castañeda, Nancy Eunice Niño; Alves, Gabriel Sergio Costa; Almeida, Rosane Mansan; Amorim, Edson Perito; Fortes Ferreira, Claudia; Togawa, Roberto Coiti; Costa, Marcos Mota Do Carmo; Grynberg, Priscila; Santos, Jansen Rodrigo Pereira; Cares, Juvenil Enrique; Miller, Robert Neil Gerard

    2017-03-01

    Endoparasitic root-knot nematodes (RKNs) ( Meloidogyne spp.) cause considerable losses in banana ( Musa spp.), with Meloidogyne incognita a predominant species in Cavendish sub-group bananas. This study investigates the root transcriptome in Musa acuminata genotypes 4297-06 (AA) and Cavendish Grande Naine (CAV; AAA) during early compatible interactions with M. incognita . Roots were analysed by brightfield light microscopy over a 35 d period to examine nematode penetration and morphological cell transformation. RNA samples were extracted 3, 7 and 10 days after inoculation (DAI) with nematode J2 juveniles, and cDNA libraries were sequenced using lllumina HiSeq technology. Sequences were mapped to the M. acuminata ssp. malaccensis var. Pahang genome sequence, differentially expressed genes (DEGs) identified and transcript representation determined by gene set enrichment and pathway mapping. Microscopic analysis revealed a life cycle of M. incognita completing in 24 d in CAV and 27 d in 4279-06. Comparable numbers of DEGs were up- and downregulated in each genotype, with potential involvement of many in early host defence responses involving reactive oxygen species and jasmonate/ethylene signalling. DEGs revealed concomitant auxin metabolism and cell wall modification processes likely to be involved in giant cell formation. Notable transcripts related to host defence included those coding for leucine-rich repeat receptor-like serine/threonine-protein kinases, peroxidases, thaumatin-like pathogenesis-related proteins, and DREB, ERF, MYB, NAC and WRKY transcription factors. Transcripts related to giant cell development included indole acetic acid-amido synthetase GH3.8 genes, involved in auxin metabolism, as well as genes encoding expansins and hydrolases, involved in cell wall modification. Expression analysis in M. acuminata during compatible interactions with RKNs provides insights into genes modulated during infection and giant cell formation. Increased

  8. REPRODUÇÃO DE Meloidogyne incognita RAÇA 2 E DE Meloidogyne javanica EM OITO ESPÉCIES DE PLANTAS MEDICINAIS

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    S.L. MACIEL

    1996-05-01

    Full Text Available Avaliaram-se as taxas reprodutivas de Meloidogyne incognita raça 2 e de Meloidogyne javanica em oito espécies de plantas consideradas medicinais, em vasos com 500 ml de solo, sob condição de casa de vegetação. Cada planta foi inoculada com 5000 ovos, em média, estabelecendo-se cinco repetições. Realizaram-se as avaliações após 45 a 55 dias das inoculações, com base nos índices de massas de ovos e nos fatores de reprodução dos nematóides. Achillea millefolium (mil-folhas, Arctium lappa (bardana, Bryophyllum calycinum (folha-da-fortuna e Crassula portulacea (bálsamo foram hospedeiras não eficientes ou desfavoráveis a ambas as espécies. Plectranthus barbatus (boldo e Polygonum hidropiperoides (polígono foram eficientes à reprodução das duas espécies. Achyrocline satureoides (macela e Tropaeolum majus (chagas foram eficientes para M. javanica e não para M. incognita.The reproductive rates of the root-knot nematodes Meloidogyne incognita race 2 and M. javanica in the roots of eight medicinal plant species were assessed under greenhouse condition. Each plant, growing in a pot containing 500 ml of sterilized soil, was inoculated with an average number of 5,000 eggs, with five repetitions. Egg mass index and reproduction factor data were used for the evaluation, 45-55 days after plant inoculation. Achillea millefolium, Arctium lappa, Bryophyllum calycinum, and Crassula portulacea were rated as poor or nonefficient hosts, while Plectranthus barbatus and Polygonum hidropiperoides were efficient for both nematode species. Achyrocline satureoides and Tropaeolum majus were efficient for M. javanica, but nonefficient for M. incognita.

  9. A Novel Meloidogyne incognita Effector Misp12 Suppresses Plant Defense Response at Latter Stages of Nematode Parasitism

    Science.gov (United States)

    Xie, Jialian; Li, Shaojun; Mo, Chenmi; Wang, Gaofeng; Xiao, Xueqiong; Xiao, Yannong

    2016-01-01

    Secreted effectors in plant root-knot nematodes (RKNs, or Meloidogyne spp.) play key roles in their parasite processes. Currently identified effectors mainly focus on the early stage of the nematode parasitism. There are only a few reports describing effectors that function in the latter stage. In this study, we identified a potential RKN effector gene, Misp12, that functioned during the latter stage of parasitism. Misp12 was unique in the Meloidogyne spp., and highly conserved in Meloidogyne incognita. It encoded a secretory protein that specifically expressed in the dorsal esophageal gland, and highly up-regulated during the female stages. Transient expression of Misp12-GUS-GFP in onion epidermal cell showed that Misp12 was localized in cytoplast. In addition, in planta RNA interference targeting Misp12 suppressed the expression of Misp12 in nematodes and attenuated parasitic ability of M. incognita. Furthermore, up-regulation of jasmonic acid (JA) and salicylic acid (SA) pathway defense-related genes in the virus-induced silencing of Misp12 plants, and down-regulation of SA pathway defense-related genes in Misp12-expressing plants indicated the gene might be associated with the suppression of the plant defense response. These results demonstrated that the novel nematode effector Misp12 played a critical role at latter parasitism of M. incognita. PMID:27446188

  10. Reação de genótipos de maracujazeiro a Meloidogyne incognita raça 3 e Meloidogyne javanica

    Directory of Open Access Journals (Sweden)

    Leandro Souza Rocha

    2013-12-01

    Full Text Available O objetivo do trabalho foi avaliar a reação de genótipos de maracujazeiro a Meloidogyne spp.. O experimento foi conduzido em casa de vegetação em DBC, com seis repetições, em esquema fatorial 9x2 (Passiflora giberti, P. nitida, P. setacea, P. mucronata, P. cincinnata, P. ligularis, P.alata, híbrido BRS Sol do Cerrado e seleção M19-UFV x Meloidogyne javanica e M. incognita raça 3. Segundo os critérios de Oostenbrink, e Moura e Régis, o BRS Sol do Cerrado, a seleção M-19-UFV e P. alata comportaram-se como imunes a M. incognita. Além destes, P. cincinnata e P. setacea foram imunes a M. javanica. Passiflora cincinnata e P.giberti comportaram-se como resistentes a M. incognita e M. javanica, respectivamente. Segundo Taylor e Sasser, os genótipos classificados como imunes pelos outros critérios foram classificados como resistentes aos nematoides. Todas as variáveis nematológicas avaliadas em P. giberti, P. ligularis, P. mucronata e P. nitida foram superiores em plantas infectadas por M. incognita. Independentemente do nematoide, P. mucronata apresentou maior número de galhas, massas de ovos, ovos, J2 e FR, em relação aos outros genótipos. O peso de matéria fresca de raiz de P. ligularis e P. mucronata foi menor na presença de M. incognita em relação a M. javanica.

  11. Effect of a Terminated Cover Crop and Aldicarb on Cotton Yield and Meloidogyne incognita Population Density.

    Science.gov (United States)

    Wheeler, T A; Leser, J F; Keeling, J W; Mullinix, B

    2008-06-01

    Terminated small grain cover crops are valuable in light textured soils to reduce wind and rain erosion and for protection of young cotton seedlings. A three-year study was conducted to determine the impact of terminated small grain winter cover crops, which are hosts for Meloidogyne incognita, on cotton yield, root galling and nematode midseason population density. The small plot test consisted of the cover treatment as the main plots (winter fallow, oats, rye and wheat) and rate of aldicarb applied in-furrow at-plant (0, 0.59 and 0.84 kg a.i./ha) as subplots in a split-plot design with eight replications, arranged in a randomized complete block design. Roots of 10 cotton plants per plot were examined at approximately 35 days after planting. Root galling was affected by aldicarb rate (9.1, 3.8 and 3.4 galls/root system for 0, 0.59 and 0.84 kg aldicarb/ha), but not by cover crop. Soil samples were collected in mid-July and assayed for nematodes. The winter fallow plots had a lower density of M. incognita second-stage juveniles (J2) (transformed to Log(10) (J2 + 1)/500 cm(3) soil) than any of the cover crops (0.88, 1.58, 1.67 and 1.75 Log(10)(J2 + 1)/500 cm(3) soil for winter fallow, oats, rye and wheat, respectively). There were also fewer M. incognita eggs at midseason in the winter fallow (3,512, 7,953, 8,262 and 11,392 eggs/500 cm(3) soil for winter fallow, oats, rye and wheat, respectively). Yield (kg lint per ha) was increased by application of aldicarb (1,544, 1,710 and 1,697 for 0, 0.59 and 0.84 kg aldicarb/ha), but not by any cover crop treatments. These results were consistent over three years. The soil temperature at 15 cm depth, from when soils reached 18 degrees C to termination of the grass cover crop, averaged 9,588, 7,274 and 1,639 centigrade hours (with a minimum threshold of 10 degrees C), in 2005, 2006 and 2007, respectively. Under these conditions, potential reproduction of M. incognita on the cover crop did not result in a yield penalty.

  12. Biological Control of Meloidogyne incognita by Aspergillus niger F22 Producing Oxalic Acid.

    Science.gov (United States)

    Jang, Ja Yeong; Choi, Yong Ho; Shin, Teak Soo; Kim, Tae Hoon; Shin, Kee-Sun; Park, Hae Woong; Kim, Young Ho; Kim, Hun; Choi, Gyung Ja; Jang, Kyoung Soo; Cha, Byeongjin; Kim, In Seon; Myung, Eul Jae; Kim, Jin-Cheol

    2016-01-01

    Restricted usage of chemical nematicides has led to development of environmentally safe alternatives. A culture filtrate of Aspergillus niger F22 was highly active against Meloidogyne incognita with marked mortality of second-stage juveniles (J2s) and inhibition of egg hatching. The nematicidal component was identified as oxalic acid by organic acid analysis and gas chromatography-mass spectroscopy (GC-MS). Exposure to 2 mmol/L oxalic acid resulted in 100% juvenile mortality at 1 day after treatment and suppressed egg hatching by 95.6% at 7 days after treatment. Oxalic acid showed similar nematicidal activity against M. hapla, but was not highly toxic to Bursaphelenchus xylophilus. The fungus was incubated on solid medium and dried culture was used for preparation of a wettable powder-type (WP) formulation as an active ingredient. Two WP formulations, F22-WP10 (ai 10%) and oxalic acid-WP8 (ai 8%), were prepared using F22 solid culture and oxalic acid. In a field naturally infested with M. incognita, application of a mixture of F22-WP10 + oxalic acid-WP8 at 1,000- and 500-fold dilutions significantly reduced gall formation on the roots of watermelon plants by 58.8 and 70.7%, respectively, compared to the non-treated control. The disease control efficacy of the mixture of F22-WP10 + oxalic acid-WP8 was significantly higher than that of a chemical nematicide, Sunchungtan (ai 30% fosthiazate). These results suggest that A. niger F22 can be used as a microbial nematicide for the control of root-knot nematode disease.

  13. Biological Control of Meloidogyne incognita by Aspergillus niger F22 Producing Oxalic Acid.

    Directory of Open Access Journals (Sweden)

    Ja Yeong Jang

    Full Text Available Restricted usage of chemical nematicides has led to development of environmentally safe alternatives. A culture filtrate of Aspergillus niger F22 was highly active against Meloidogyne incognita with marked mortality of second-stage juveniles (J2s and inhibition of egg hatching. The nematicidal component was identified as oxalic acid by organic acid analysis and gas chromatography-mass spectroscopy (GC-MS. Exposure to 2 mmol/L oxalic acid resulted in 100% juvenile mortality at 1 day after treatment and suppressed egg hatching by 95.6% at 7 days after treatment. Oxalic acid showed similar nematicidal activity against M. hapla, but was not highly toxic to Bursaphelenchus xylophilus. The fungus was incubated on solid medium and dried culture was used for preparation of a wettable powder-type (WP formulation as an active ingredient. Two WP formulations, F22-WP10 (ai 10% and oxalic acid-WP8 (ai 8%, were prepared using F22 solid culture and oxalic acid. In a field naturally infested with M. incognita, application of a mixture of F22-WP10 + oxalic acid-WP8 at 1,000- and 500-fold dilutions significantly reduced gall formation on the roots of watermelon plants by 58.8 and 70.7%, respectively, compared to the non-treated control. The disease control efficacy of the mixture of F22-WP10 + oxalic acid-WP8 was significantly higher than that of a chemical nematicide, Sunchungtan (ai 30% fosthiazate. These results suggest that A. niger F22 can be used as a microbial nematicide for the control of root-knot nematode disease.

  14. Multiple Modes of Nematode Control by Volatiles of Pseudomonas putida 1A00316 from Antarctic Soil against Meloidogyne incognita

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    Yile Zhai

    2018-02-01

    Full Text Available Pseudomonas putida 1A00316 isolated from Antarctic soil showed nematicidal potential for biological control of Meloidogyne incognita; however, little was known about whether strain 1A00316 could produce volatile organic compounds (VOCs, and if they had potential for use in biological control against M. incognita. In this study, VOCs produced by a culture filtrate of P. putida 1A00316 were evaluated by in vitro experiments in three-compartment Petri dishes and 96-well culture plates. Our results showed that M. incognita juveniles gradually reduced their movement within 24–48 h of incubation with mortality ranging from 6.49 to 86.19%, and mostly stopped action after 72 h. Moreover, egg hatching in culture filtrates of strain 1A00316 was much reduced compared to that in sterile distilled water or culture medium. Volatiles from P. putida 1A00316 analysis carried out by solid-phase micro-extraction gas chromatography–mass spectrometry (SPME-GC/MS included dimethyl-disulfide, 1-undecene, 2-nonanone, 2-octanone, (Z-hexen-1-ol acetate, 2-undecanone, and 1-(ethenyloxy-octadecane. Of these, dimethyl-disulfide, 2-nonanone, 2-octanone, (Z-hexen-1-ol acetate, and 2-undecanone had strong nematicidal activity against M. incognita J2 larvae by direct-contact in 96-well culture plates, and only 2-undecanone acted as a fumigant. In addition, the seven VOCs inhibited egg hatching of M. incognita both by direct-contact and by fumigation. All of the seven VOCs repelled M. incognita J2 juveniles in 2% water agar Petri plates. These results show that VOCs from strain 1A00316 act on different stages in the development of M. incognita via nematicidal, fumigant, and repellent activities and have potential for development as agents with multiple modes of control of root-knot nematodes.

  15. Evaluation of repeated bio disinfestation using Brassica carinata pellets to control Meloidogyne incognita in protected pepper crops

    Energy Technology Data Exchange (ETDEWEB)

    Guerrero-Diaz, M. M.; Lacasa-Martinez, C. M.; Hernandez-Pinera, A.; Martinez-Alarcon, V.; Lacasa Plasencia, A.

    2013-06-01

    The nematode Meloidogyne incognita is responsible for substantial losses in greenhouse-grown peppers in southeastern Spain. This study evaluates the use of biodisinfestation (BS) (organic amendment + solarisation) as an alternative to using methyl bromide (MB) over three consecutive years to control the nematode in greenhouse conditions. Brassica carinata (BP) pellets or B. carinata (BP) + fresh sheep manure (M) were evaluated in treatments which began on two different dates (August and October) and the results were compared with MB-disinfested and untreated controls. During the third year, the gall index for BP was lower than that obtained for BP +M and in the August treatment than in the October treatment. The commercial crop of pepper fruit obtained with the biodisinfestation treatments begun in August was similar to or higher than that obtained with MB, and higher than that obtained with both October biodisinfestation treatments. The yield of the October biodisinfestation treatments was higher than that of the untreated one. In August of all the years studied, the accumulated exposure times were greater than the thresholds required to kill M. incognita populations at 15 cm depth. The incidence of the nematode did not correspond to the reduction achieved during solarisation, and seemed to increase during the crop cycle. Further studies should look at why high temperatures do not produce a sustained reduction in the populations of Meloidogyne incognita. (Author) 56 refs.

  16. Resistência de clones de umezeiro e cultivares de pessegueiro a Meloidogyne incognita (nemata: Heteroderidae Resistance of mume clones and peach tree cultivars to Meloidogyne incognita (nemata: heteroderidae

    Directory of Open Access Journals (Sweden)

    Newton Alex Mayer

    2005-08-01

    Full Text Available O presente estudo teve por objetivo avaliar a reação dos Clones 05; 10 e 15 de umezeiro (Prunus mume Sieb. et Zucc. e das cultivares Okinawa, Aurora-1 e Dourado-1 de pessegueiro [Prunus persica (L. Batsch] a Meloidogyne incognita (Kofoid and White Chitwood, em condições de casa de vegetação. As plantas foram mantidas em vasos de cerâmica contendo uma mistura de solo e areia (1:1, v/v, previamente autoclavada a 121ºC e 1kgf.cm-2 por 2 horas. Aos 60 dias após o plantio, cada planta foi inoculada com 2.000 ovos e juvenis de segundo estádio de Meloidogyne incognita. O experimento foi conduzido em delineamento inteiramente casualizado, com 6 tratamentos (genótipos e 9 repetições. Transcorridos 116 dias após a inoculação, as plantas foram colhidas para avaliação do sistema radicular. Foi possível verificar que o número de galhas por sistema radicular, o número de ovos e juvenis por 10g de raízes e por sistema radicular foi nulo ou praticamente nulo em todos os clones e nas cultivares estudadas, de forma que os respectivos fatores de reprodução foram todos inferiores a 1. Conclui-se que os Clones 05; 10 e 15 de umezeiro, assim como as cultivares Okinawa, Aurora-1 e Dourado-1 de pessegueiro são resistentes a Meloidogyne incognita.The present study had for objective to study the reaction of mume Clones 05, 10 and 15 (Prunus mume Sieb. et Zucc. and 'Okinawa', 'Aurora-1' and 'Dourado-1' peach tree cultivars [Prunus persica (L. Batsch] to Meloidogyne incognita (Kofoid and White Chitwood, in greenhouse conditions. The plants were maintained in ceramic boxes containing a soil-sand mixture (1:1, v/v, previously autoclaved at 121ºC and 1 kgf.cm-2 for 2 hours. On the sixtieth day after planting, each plant was inoculated with 2,000 eggs in the second stage juvenile of Meloidogyne incognita. The experiment was carried out in randomized design with 6 treatments (genotypes and 9 repetitions. After 116 days from inoculation, plants were

  17. Identification de marques épigénétiques chez le nématode à galles parasite de plantes Meloidogyne incognita

    OpenAIRE

    Pratx, Loris

    2017-01-01

    Meloidogyne incognita is the most damaging plant-parasitic nematode in agriculture. M. incognita reproduces in an asexual way by obligatory parthenogenesis. Genetically identical individuals develop from females and form clonal populations. Although these clones share the same genetic heritage, modifications of their phenotype can be observed when they are exposed to unfavorable environments. This phenotypic plasticity is characterized through two phenotypes of interest: sex-differentiation a...

  18. Nematicidal activity of mint aqueous extracts against the root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Caboni, Pierluigi; Saba, Marco; Tocco, Graziella; Casu, Laura; Murgia, Antonio; Maxia, Andrea; Menkissoglu-Spiroudi, Urania; Ntalli, Nikoletta

    2013-10-16

    The nematicidal activity and chemical characterization of aqueous extracts and essential oils of three mint species, namely, Mentha × piperita , Mentha spicata , and Mentha pulegium , were investigated. The phytochemical analysis of the essential oils was performed by means of GC-MS, whereas the aqueous extracts were analyzed by LC-MS. The most abundant terpenes were isomenthone, menthone, menthol, pulegone, and carvone, and the water extracts yielded mainly chlorogenic acid, salvianolic acid B, luteolin-7-O-rutinoside, and rosmarinic acid. The water extracts exhibited significant nematicidal activity against Meloidogyne incognita , and the EC50/72h values were calculated at 1005, 745, and 300 mg/L for M. × piperita, M. pulegium, and M. spicata, respectively. Only the essential oil from M. spicata showed a nematicidal activity with an EC50/72h of 358 mg/L. Interestingly, menthofuran and carvone showed EC50/48h values of 127 and 730 mg/L, respectively. On the other hand, salicylic acid, isolated in the aqueous extracts, exhibited EC50 values at 24 and 48 h of 298 ± 92 and 288 ± 79 mg/L, respectively.

  19. Molecular Cloning and Characterization of a Wild Eggplant Solanum aculeatissimum NBS-LRR Gene, Involved in Plant Resistance to Meloidogyne incognita

    OpenAIRE

    Xiaohui Zhou; Jun Liu; Shengyou Bao; Yan Yang; Yong Zhuang

    2018-01-01

    Root-knot nematodes, Meloidogyne spp., cause considerable damage in eggplant production. Transferring of resistance genes from wild relatives would be valuable for the continued improvement of eggplant. Solanum aculeatissimum, a wild relative of eggplant possessing resistance to Meloidogyne incognita, is potentially useful for genetically enhancing eggplant. In the present study, we have isolated and characterized a nucleotide-binding site leucine-rich repeat (NBS-LRR) resistance gene, design...

  20. Single basal application of thiacloprid for the integrated management of Meloidogyne incognita and Bemisia tabaci in tomato crops

    Science.gov (United States)

    Dong, Sa; Ren, Xiaofen; Zhang, Dianli; Ji, Xiaoxue; Wang, Kaiyun; Qiao, Kang

    2017-01-01

    Tomato growers commonly face heavy nematode (Meloidogyne incognita) and whitefly (B-biotype Bemisia tabaci) infestations, and previous studies demonstrated that thiacloprid could be used to control M. incognita and B. tabaci in cucumber. However, the efficacy of a single basal application of thiacloprid to control both pests and its effect on yield in tomato remains unknown. In this study, the potential of thiacloprid application to the soil for the integrated control of M. incognita and B. tabaci in tomato was evaluated in the laboratory and the field. Laboratory tests showed that thiacloprid was highly toxic to whitefly adults and eggs with an average lethal concentration 50 (LC50) of 14.7 and 62.2 mg ai L-1, respectively, and the LC50 of thiacloprid for nematode J2s and eggs averaged 36.2 and 70.4 mg ai L-1, respectively. In field trials, when thiacloprid was applied to the soil at 7.5, 15 and 30 kg ha-1 in two consecutive years, whitefly adults decreased by 37.8-75.4% within 60 days of treatment, and the root-galling index was reduced by 31.8-85.2%. Optimum tomato plant growth and maximum yields were observed in the 15 kg ha-1 treatment. The results indicated that a single basal application of thiacloprid could control M. incognita and B. tabaci and enhance tomato growth and yield.

  1. Overexpression of MIC-3 indicates a direct role for the MIC gene family in mediating Upland cotton (Gossypium hirsutum) resistance to root-knot nematode (Meloidogyne incognita)

    Science.gov (United States)

    Major quantitative trait loci (QTL) have been mapped to Upland cotton (Gossypium hirsutum L.) chromosomes 11 and 14 that govern the highly resistant phenotype in response to infection by root-knot nematode (RKN; Meloidogyne incognita Chitwood & White); however, nearly nothing is known regarding the ...

  2. In vitro proteolysis of nematode FLPs by preparations from the free-living nematode Panagrellus redivivus and two plant-parasitic nematodes (Heterodera glycines and Meloidogyne incognita)

    Science.gov (United States)

    Proteolytic activities in extracts from three nematodes, the plant parasites Heterodera glycines and Meloidogyne incognita, and the free-living Panagrellus redivivus, were surveyed for substrate preferences using a battery of seven FRET-modified peptide substrates, all derived from members of the la...

  3. Comparative efficacy of different approaches to managing Meloidogyne incognita on green bean

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    Ahmad S. Al-Hazmi

    2017-01-01

    Full Text Available A greenhouse study was conducted to compare the relative efficacy of different approaches to managing Meloidogyne incognita on green bean. These approaches included chemical (fumigant, non-fumigant, seed dressing, and seed dip, biological (the egg-parasitic fungus, Paecilomyces lilacinus and the mycorrhizal fungus Glomus sp., physical (soil solarization, and cultural (chicken litter and urea methods. Accordingly, nine different control materials and application methods plus nematode-infected and non-infected controls were compared. Two important parameters were considered: plant response (plant growth and root galling and nematode reproduction (production of eggs and the reproduction factor Rf. The results showed that the use of chicken litter as an organic fertilizer severely affected the growth and survival of the plants. Therefore, this treatment was removed from the evaluation test. All of the other eight treatments were found to be effective against nematode reproduction, but with different levels of efficacy. The eight treatments decreased (38.9–99.8% root galling, increased plant growth and suppressed nematode reproduction. Based on three important criteria, namely, gall index (GI, egg mass index (EMI, and nematode reproduction factor (RF, the tested materials and methods were categorized into three groups according to their relative control efficacy under the applied test conditions. The three groups were as follows: (1 the relatively high effective group (GI = 1.0–1.4, Rf = 0.07–0.01, which included the fumigant dazomet, the non-fumigant fenamiphos, soil solarization, and seed dip with fenamiphos; (2 the relatively moderate effective group (GI = 3.4–4.0, Rf = 0.24–0.60, which included seed dressing with fenamiphos and urea; and (3 the relatively less effective group (GI = 5.0, Rf = 32.2–37.2, which included P. lilacinus and Glomus sp.

  4. Nematicidal activity of acetophenones and chalcones against Meloidogyne incognita and structure-activity considerations.

    Science.gov (United States)

    Caboni, Pierluigi; Aissani, Nadhem; Demurtas, Monica; Ntalli, Nikoletta; Onnis, Valentina

    2016-01-01

    With the ultimate goal of identifying new compounds active against root-knot nematodes, a set of 14 substituted chalcones were synthesised, starting from acetophenones. These chalcones and various acetophenones were tested in vitro against Meloidogyne incognita. The most potent acetophenones were 4-nitroacetophenone and 4-iodoacetophenone, with EC(50/24 h) values of 12 ± 5 and 15 ± 4 mg L(-1) respectively, somewhat weaker than that of the chemical control fosthiazate in our previous experiments (EC(50/24 h) 0.4 ± 0.3 mg L(-1)). When we converted the acetophenones to chalcones, the nematicidal activity differed, based on their substitution pattern. The condensation of 4-nitroacetophenone with 2,4,6-trihydroxybenzaldehyde to give the corresponding chalcone (E)-1-(4-nitrophenyl)-3-(2,4,6-trihydroxyphenyl)prop-2-en-1-one led to a slight reduction in activity (EC(50/24 h) value 25 ± 17 mg L(-1)). Moreover, (E)-3-(2-hydroxy-5-iodophenyl)-1-(4-methoxyphenyl)prop-2-en-1-one showed better activity (EC(50/24) h value 26 ± 15 mg L(-1)) than 4-methoxyacetophenone (EC(50/24 h) value 43 ± 10 mg L(-1)). Acetophenones and chalcones may represent good leads in the discovery of new nematicidal compounds and may have potential use in crop management as active ingredients. © 2015 Society of Chemical Industry.

  5. Resistance to Southern Root-knot Nematode (Meloidogyne incognita) in Wild Watermelon (Citrullus lanatus var. citroides).

    Science.gov (United States)

    Thies, Judy A; Ariss, Jennifer J; Kousik, Chandrasekar S; Hassell, Richard L; Levi, Amnon

    2016-03-01

    Southern root-knot nematode (RKN, Meloidogyne incognita) is a serious pest of cultivated watermelon (Citrullus lanatus var. lanatus) in southern regions of the United States and no resistance is known to exist in commercial watermelon cultivars. Wild watermelon relatives (Citrullus lanatus var. citroides) have been shown in greenhouse studies to possess varying degrees of resistance to RKN species. Experiments were conducted over 2 yr to assess resistance of southern RKN in C. lanatus var. citroides accessions from the U.S. Watermelon Plant Introduction Collection in an artificially infested field site at the U.S. Vegetable Laboratory in Charleston, SC. In the first study (2006), 19 accessions of C. lanatus var. citroides were compared with reference entries of Citrullus colocynthis and C. lanatus var. lanatus. Of the wild watermelon accessions, two entries exhibited significantly less galling than all other entries. Five of the best performing C. lanatus var. citroides accessions were evaluated with and without nematicide at the same field site in 2007. Citrullus lanatus var. citroides accessions performed better than C. lanatus var. lanatus and C. colocynthis. Overall, most entries of C. lanatus var. citroides performed similarly with and without nematicide treatment in regard to root galling, visible egg masses, vine vigor, and root mass. In both years of field evaluations, most C. lanatus var. citroides accessions showed lesser degrees of nematode reproduction and higher vigor and root mass than C. colocynthis and C. lanatus var. lanatus. The results of these two field evaluations suggest that wild watermelon populations may be useful sources of resistance to southern RKN.

  6. Genomes of parasitic nematodes (Meloidogyne hapla, Meloidogyne incognita, Ascaris suum and Brugia malayi) have a reduced complement of small RNA interference pathway genes: knockdown can reduce host infectivity of M. incognita.

    Science.gov (United States)

    Iqbal, Sadia; Fosu-Nyarko, John; Jones, Michael G K

    2016-07-01

    The discovery of RNA interference (RNAi) as an endogenous mechanism of gene regulation in a range of eukaryotes has resulted in its extensive use as a tool for functional genomic studies. It is important to study the mechanisms which underlie this phenomenon in different organisms, and in particular to understand details of the effectors that modulate its effectiveness. The aim of this study was to identify and compare genomic sequences encoding genes involved in the RNAi pathway of four parasitic nematodes: the plant parasites Meloidogyne hapla and Meloidogyne incognita and the animal parasites Ascaris suum and Brugia malayi because full genomic sequences were available-in relation to those of the model nematode Caenorhabditis elegans. The data generated was then used to identify some potential targets for control of the root knot nematode, M. incognita. Of the 84 RNAi pathway genes of C. elegans used as model in this study, there was a 42-53 % reduction in the number of effectors in the parasitic nematodes indicating substantial differences in the pathway between species. A gene each from six functional groups of the RNAi pathway of M. incognita was downregulated using in vitro RNAi, and depending on the gene (drh-3, tsn-1, rrf-1, xrn-2, mut-2 and alg-1), subsequent plant infection was reduced by up to 44 % and knockdown of some genes (i.e. drh-3, mut-2) also resulted in abnormal nematode development. The information generated here will contribute to defining targets for more robust nematode control using the RNAi technology.

  7. Screening and Histopathological Characterization of Korean Carrot Lines for Resistance to the Root-Knot Nematode Meloidogyne incognita

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    Yunhee Seo

    2014-03-01

    Full Text Available In total, 170 carrot lines developed in Korea were screened for resistance to Meloidogyne incognita race 1 to select parental genetic resources useful for the development of nematode-resistant carrot cultivars. Using the gall index (GI, gall formation was examined on carrot roots inoculated with approximately 1,000 second-stage juveniles of the nematode 7 weeks after inoculation. Sixty-one carrot lines were resistant (GI ≤ 1.0, while the other 109 were susceptible (GI > 1.0 with coefficient of variance (CV of GI for total carrot lines 0.68, indicating low-variation of GI within the lines examined. The histopathological responses of two carrot plants from resistant and susceptible lines were examined after nematode infection. In susceptible carrots, giant cells formed with no discernible necrosis around the infecting nematodes. In the resistant carrot line, however, no giant cells formed, although modified cells were observed with extensive formation of necrotic layers through their middle lamella and around the infecting nematodes. This suggested that these structural modifications were related to hypersensitive responses governed by the expression of true resistance genes. Therefore, the Korean carrot lines resistant to the nematode infection are potential genetic resources for the development of quality carrot cultivars resistant to M. incognita race 1.

  8. Molecular Cloning and Characterization of a Wild Eggplant Solanum aculeatissimum NBS-LRR Gene, Involved in Plant Resistance to Meloidogyne incognita

    Directory of Open Access Journals (Sweden)

    Xiaohui Zhou

    2018-02-01

    Full Text Available Root-knot nematodes, Meloidogyne spp., cause considerable damage in eggplant production. Transferring of resistance genes from wild relatives would be valuable for the continued improvement of eggplant. Solanum aculeatissimum, a wild relative of eggplant possessing resistance to Meloidogyne incognita, is potentially useful for genetically enhancing eggplant. In the present study, we have isolated and characterized a nucleotide-binding site leucine-rich repeat (NBS-LRR resistance gene, designated as SacMi. The full-length cDNA of the SacMi gene was obtained using the technique of rapid-amplification of cDNA ends (RACE. The open reading frame of the SacMi gene was 4014 bp and encoded a protein of 1338 amino acids. Sequence analysis indicated that SacMi belong to the non- Toll/Interleukin-1 receptor (TIR-NBS-LRR type disease-resistance genes. Interestingly, quantitative RT-PCR showed that SacMi is expressed at low levels in uninfected roots, but was up-regulated by infection with M. incognita. To investigate the role of SacMi in S. aculeatissimum resistance against M. incognica, the tobacco rattle virus (TRV-mediated virus-induced gene silencing (VIGS system was used. Silencing of SacMi enhanced susceptibility of S. aculeatissimum plants to M. incognita, suggesting the possible involvement of SacMi in resistance against M. incognita infection.

  9. Molecular Cloning and Characterization of a Wild Eggplant Solanum aculeatissimum NBS-LRR Gene, Involved in Plant Resistance to Meloidogyne incognita.

    Science.gov (United States)

    Zhou, Xiaohui; Liu, Jun; Bao, Shengyou; Yang, Yan; Zhuang, Yong

    2018-02-15

    Root-knot nematodes, Meloidogyne spp., cause considerable damage in eggplant production. Transferring of resistance genes from wild relatives would be valuable for the continued improvement of eggplant. Solanum aculeatissimum , a wild relative of eggplant possessing resistance to Meloidogyne incognita , is potentially useful for genetically enhancing eggplant. In the present study, we have isolated and characterized a nucleotide-binding site leucine-rich repeat (NBS-LRR) resistance gene, designated as SacMi . The full-length cDNA of the SacMi gene was obtained using the technique of rapid-amplification of cDNA ends (RACE). The open reading frame of the SacMi gene was 4014 bp and encoded a protein of 1338 amino acids. Sequence analysis indicated that SacMi belong to the non- Toll/Interleukin-1 receptor (TIR)-NBS-LRR type disease-resistance genes. Interestingly, quantitative RT-PCR showed that SacMi is expressed at low levels in uninfected roots, but was up-regulated by infection with M. incognita . To investigate the role of SacMi in S. aculeatissimum resistance against M. incognica , the tobacco rattle virus (TRV)-mediated virus-induced gene silencing (VIGS) system was used. Silencing of SacMi enhanced susceptibility of S. aculeatissimum plants to M. incognita , suggesting the possible involvement of SacMi in resistance against M. incognita infection.

  10. Interactions between an arbuscular mycorrhizal fungus (Scutellospora heterogama and the root-knot nematode (Meloidogyne incognita on sweet passion fruit (Passiflora alata

    Directory of Open Access Journals (Sweden)

    Érika Cristina Teixeira dos Anjos

    2010-08-01

    Full Text Available The effects of inoculation of sweet passion fruit plants with the arbuscular mycorrhizal (AM fungus Scutellospora heterogama on the symptoms produced by Meloidogyne incognita race 1 and its reproduction were evaluated in two greenhouse experiments. In the 1st, the M. incognita (5000 eggs/plant and S. heterogama (200 spores/plant inoculations were simultaneous; in the 2nd, the nematodes were inoculated 120 days after the fungal inoculation. In both the experiments, 220 days after AM fungal inoculation, plant growth was stimulated by the fungus. In disinfested soil, control seedlings (without S. heterogama were intolerant to parasitism of M. incognita, while the growth of mycorrhized seedlings was not affected. Sporulation of S. heterogama was negatively affected by the nematodes that did not impair the colonization. M. incognita did not affect mycorrhizal seedling growth. The establishment of mycorrhiza prior to the nematode infection contributed for the reduction of symptoms severity and reproduction of M. incognita in disinfested soil.O efeito da inoculação com Scutellospora heterogama (200 esporos/planta em relação aos sintomas e reprodução de Meloidogyne incognita raça 1 (5000 ovos/planta foi avaliado em plantas de maracujazeiro doce em dois experimentos em casa de vegetação. No primeiro experimento, inoculações com nematóide e FMA foram simultâneas; no segundo, nematóides foram inoculados 120 dias após o estabelecimento da simbiose micorrízica. Após o 220º dia da inoculação do FMA o fungo estimulou o crescimento da planta nos dois experimentos. No solo desinfestado as mudas não inoculadas com S. heterogama mostraram intolerância ao parasitismo de M. incognita. A esporulação de S. heterogama foi negativamente afetada pela presença do nematóide. M. incognita não afetou o crescimento das mudas micorrizadas ou o desenvolvimento do FMA. O estabelecimento da micorriza antes do nematóide contribui para a redução da

  11. Seleção de clones de batata-doce resistentes a Meloidogyne incognita raça 1 Selection of sweetpotato clones resistant to Meloidogyne incognita race 1

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    Aline Marchese

    2010-09-01

    Full Text Available O objetivo deste trabalho foi selecionar clones de batata-doce (Ipomoea batatas resistentes à raça 1 de Meloidogyne incognita e avaliar a eficiência do método de seleção empregado, pela estimação dos coeficientes de variação genética e ambiental e das herdabilidades no sentido amplo. Foram utilizados 123 genótipos de batata-doce, entre os quais quatro cultivares comerciais - Brazlândia Rosada, Brazlândia Roxa, Brazlândia Branca e Palmas -, e 119 acessos previamente selecionados no programa de melhoramento vegetal da Universidade Federal de Lavras. O delineamento experimental utilizado foi o de blocos aumentados, com três tratamentos comuns: as cultivares de batata-doce Brazlândia Branca e Palmas, e a cultivar de tomate Santa Clara, suscetível ao nematoide. A classificação dos níveis de resistência foi realizada de acordo com o fator de reprodução do nematoide e o índice de reprodução relativo à cultivar Santa Clara, de tomateiro. A relação entre os coeficientes de variação genética e ambiental e as herdabilidades no sentido amplo foram altas, tanto para o fator de reprodução quanto para o índice de reprodução dos nematoides, o que demonstra a eficiência do método empregado para a seleção de genótipos resistentes. Foram identificados 57 genótipos promissores de batata-doce, resistentes à raça 1 de M. incognita, e selecionados para continuar no programa de melhoramento.The objective of this work was to select sweetpotato (Ipomoea batatas resistant clones to Meloidogyne incognita race 1, and to assess the efficiency of the selection method deployed, through the estimation of genetic and environmental coefficients of variation, and broad-sense heritabilities. Genotypes assessed comprised 123 sweetpotato entries altogether, including four commercial cultivars - Brazlândia Rosada, Brazlândia Roxa, Brazlândia Branca, Palmas - and 119 clones previously selected by the Universidade Federal de Lavras

  12. Enxertia e sua influencia na produção de pepino e reprodução de Meloidogyne javanica e M. incognita Effect of grafting on cucumber production and reproduction of Meloidogyne javanica and M. incognita

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    Ariane C Salata

    2012-12-01

    Full Text Available A enxertia em porta-enxertos resistentes é uma técnica frequentemente recomendada para a cultura do pepino em áreas infestadas com nematoides-das-galhas. O presente trabalho teve como objetivo avaliar a produção de pepino enxertado em dois porta-enxertos comparado com pé-franco em solo infestado com Meloidogyne incognita raça 2 ou com M. javanica. Foram avaliados nove tratamentos (fatorial 3x3: pepino híbrido Tsuyataro pé-franco, enxertado na abóbora híbrida 'Shelper' e enxertado na abóbora híbrida 'Excitte Ikki' x sem inoculação, inoculação com M. incognita e inoculação com M. javanica, no delineamento em blocos ao acaso, com quatro repetições e seis plantas por parcela. Para as características de produção de frutos (número de frutos totais e comerciais por planta, massa de frutos totais e comerciais por planta não foi obtida interação entre os fatores. Obteve-se maior produção de frutos em plantas enxertadas sobre a abóbora 'Shelper', independente da espécie de nematoide, enquanto que a enxertia sobre 'Excitte Ikki' não diferiu do pé-franco para produção total. Ambas as espécies de nematoide reduziram a produção de frutos, porém este efeito foi mais pronunciado com M. javanica. Tanto o pepino pé-franco como as plantas enxertadas foram suscetíveis, pois permitiram a multiplicação dos nematoides, com fator de reprodução, em avaliação realizada aos 72 dias após a inoculação, variando de 3,57 a 15,04, sendo que para M. javanica este valor foi maior no pepino pé-franco.Grafting on resistant rootstock is a technique often recommended for cucumber crop in root-knot nematodes infested areas. We studied the yield of grafted cucumber on two rootstocks compared with non grafted in soil infested with Meloidogyne javanica or with M. incognita race 2. Nine treatments (factorial 3x3: Japanese cucumber hybrid Tsuyataro without grafting, grafted on squash hybrid Shelper and grafted on squash hybrid Excitte

  13. EFECTO DEL VERMICOMPOST Y QUITINA SOBRE EL CONTROL DE Meloidogyne incognita EN TOMATE A NIVEL DE INVERNADERO

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    Leida Castro

    2011-01-01

    Full Text Available Meloidogyne incognita es un nematodo endoparásito sedentario, de penetración total y formador de nódulos radicales; tiene una amplia distribución geográfica y causa pérdidas agrícolas importantes. Recientemente se han utilizado abonos orgánicos y compuestos como la quitina en la supresión de plagas y enfermedades de plantas. El objetivo de esta investigación fue evaluar el efecto de la aplicación de vermicompost de estiércol bovino y su enriquecimiento con quitina, sobre la infección de M. incognita en plantas de tomate var. Hayslip bajo condiciones de invernadero. Para esto se inocularon las plantas con 5000 unidades de inóculo (huevos+juveniles en segundo estado por maceta y se compararon con controles que fueron sembrados en suelo sin enmienda orgánica o quitina. La evaluación se llevó a cabo 60 días después y se midió el peso fresco aéreo y radical, peso seco aéreo, población total de nematodos en raíz y suelo, índice de nódulos radicales (INR, índice de masas de huevos (IMH, el factor de reproducción del nematodo (FR y recuento de grupos funcionales (hongos, bacterias y actinomicetes. La adición al suelo de vermicompost provocó un incremento en las variables peso fresco y seco foliar y peso fresco radical: a mayor porcentaje de vermicompost, mayor incremento; así mismo, la aplicación del vermicompost redujo la cantidad del nematodo en raíz y en suelo. La aplicación de quitina acentuó estos resultados, obteniéndose el menor factor de reproducción de M. Incognita, con un valor de 3,76 para la dosis de 50% vermicompost+quitina, mientras que en el testigo este factor fue de 93,20. La aplicación de quitina como enmienda única solo afectó la población de hongos en el suelo, mientras que la de actinomicetes aumentó en los tratamientos enmendados.

  14. Brassicaceous Seed Meals as Soil Amendments to Suppress the Plant-parasitic Nematodes Pratylenchus penetrans and Meloidogyne incognita1

    Science.gov (United States)

    Meyer, S. L. F.; Morra, M. J.

    2009-01-01

    Brassicaceous seed meals are the residual materials remaining after the extraction of oil from seeds; these seed meals contain glucosinolates that potentially degrade to nematotoxic compounds upon incorporation into soil. This study compared the nematode-suppressive ability of four seed meals obtained from Brassica juncea ‘Pacific Gold’, B. napus ‘Dwarf Essex’ and ‘Sunrise’, and Sinapis alba ‘IdaGold’, against mixed stages of Pratylenchus penetrans and Meloidogyne incognita second-stage juveniles (J2). The brassicaceous seed meals were applied to soil in laboratory assays at rates ranging from 0.5 to 10.0% dry w/w with a nonamended control included. Nematode mortality was assessed after 3 days of exposure and calculated as percentage reduction compared to a nonamended control. Across seed meals, M. incognita J2 were more sensitive to the brassicaceous seed meals compared to mixed stages of P. penetrans. Brassica juncea was the most nematode-suppressive seed meal with rates as low as 0.06% resulting in > 90% suppression of both plant-parasitic nematodes. In general B. napus ‘Sunrise’ was the least nematode-suppressive seed meal. Intermediate were the seed meals of S. alba and B. napus ‘Dwarf Essex’; 90% suppression was achieved at 1.0% and 5.0% S. alba and 0.25% and 2.5% B. napus ‘Dwarf Essex’, for M. incognita and P. penetrans, respectively. For B. juncea, seed meal glucosinolate-degradation products appeared to be responsible for nematode suppression; deactivated seed meal (wetted and heated at 70 °C for 48 hr) did not result in similar P. penetrans suppression compared to active seed meal. Sinapis alba seed meal particle size also played a role in nematode suppression with ground meal resulting in 93% suppression of P. penetrans compared with 37 to 46% suppression by pelletized S. alba seed meal. This study demonstrates that all seed meals are not equally suppressive to nematodes and that care should be taken when selecting a source

  15. KETAHANAN BEBERAPA VARIETAS UNGGUL KEDELAI TERHADAP NEMATODA PURU AKAR (Meloidogyne incognita

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    Wayan Sukanaya

    2001-07-01

    Full Text Available The aims of this experiment are to find the varieties of soybean which are resistant against root-knot nematode (M. incognita and to determine its attractancy toward the roots of resistant and susceptible soybean varieties. The experiment was divided into two parts, both parts using Completely Randomized Design. The first part was designed to determine the resistance and the second one to determine attractancy. The experiments were conducted in a green house and Plant Pest and Disease Laboratory, Faculty of Agriculture, Udayana University for 5 months. Of the 23 varieties of soybean tested against M. incognita showed that two varieties (Petek and Rinjani were moderately resistant, 11 varieties were moderately susceptible and 10 varieties were found to be susceptible. However, none of variety was resistant. While on attractancy of root test of moderately resistant and susceptible variety it was found that M. incognita was more attracted to root of susceptible variety (Ringgit than to moderately resistant variety (Petek. Key words: soybean, resistance, root-knot nematode

  16. Fly ash effect on hatching, mortality and penetration of root-knot nematode (Meloidogyne incognita in pumpkin roots

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    Gufran Ahmad

    2016-09-01

    Full Text Available An experiment was conducted to observe the effect of fly ash on hatching, mortality and penetration of root-knot nematode (Meloidogyne incognita in pumpkin roots. For hatching experiment different fly ash-extract concentrations (5, 10, 20, 30, 40, and 50% were prepared. Hatching was significantly reduced in all concentrations, maximum being at 50% concentration. The mortality (% of juveniles was observed in 1, 2, 3, 4, 5, 6 and 7th days with different levels (5, 10, 20, 30, 40 and 50 % of fly ash-extract. All the levels were found harmful to juveniles. As the level was increased, the killing percentage of juveniles was also increased. Highest mortality was observed in 7th day with 50% level.For the penetration experiment, fly ash was mixed with soil to prepare different concentrations (5, 10, 20, 30, 40, and 50%. Seeds of pumpkin were grown in coffee cups filled with different mixtures. At two leaf stage, seedlings were inoculated with 2000 larvae. The penetrated larvae in roots were observed after 1, 2, 3, 4, 5, 6 and 7 days. Root penetration was found inversely proportional to concentration. Significant results in the suppression of nematode penetration were noted up to 40% concentration. However, none of the juveniles was penetrated at 50% concentration.International Journal of Environment Vol.5(3 2016, pp.66-73

  17. Identification of MicroRNAs in Meloidogyne incognita Using Deep Sequencing.

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    Yunsheng Wang

    Full Text Available MicroRNAs play important regulatory roles in eukaryotic lineages. In this paper, we employed deep sequencing technology to sequence and identify microRNAs in M. incognita genome, which is one of the important plant parasitic nematodes. We identified 102 M. incognita microRNA genes, which can be grouped into 71 nonredundant miRNAs based on mature sequences. Among the 71 miRANs, 27 are known miRNAs and 44 are novel miRNAs. We identified seven miRNA clusters in M. incognita genome. Four of the seven clusters, miR-100/let-7, miR-71-1/miR-2a-1, miR-71-2/miR-2a-2 and miR-279/miR-2b are conserved in other species. We validated the expressions of 5 M. incognita microRNAs, including 3 known microRNAs (miR-71, miR-100b and let-7 and 2 novel microRNAs (NOVEL-1 and NOVEL-2, using RT-PCR. We can detect all 5 microRNAs. The expression levels of four microRNAs obtained using RT-PCR were consistent with those obtained by high-throughput sequencing except for those of let-7. We also examined how M. incognita miRNAs are conserved in four other nematodes species: C. elegans, A. suum, B. malayi and P. pacificus. We found that four microRNAs, miR-100, miR-92, miR-279 and miR-137, exist only in genomes of parasitic nematodes, but do not exist in the genomes of the free living nematode C. elegans. Our research created a unique resource for the research of plant parasitic nematodes. The candidate microRNAs could help elucidate the genomic structure, gene regulation, evolutionary processes, and developmental features of plant parasitic nematodes and nematode-plant interaction.

  18. Colored Mulches Affect Yield of Fresh-market Tomato Infected with Meloidogyne incognita

    OpenAIRE

    Fortnum, B. A.; Decoteau, D. R.; Kasperbauer, M. J.

    1997-01-01

    The effects of different-colored polyethylene mulches on the quantity and spectra of reflected light, earliness of fruit set, fruit yield and quality, and root-knot disease were studied in field-grown, staked tomato (Lycopersicon esculentum). White mulch reflected more photosynthetic light and a lower far-red-to-red ratio than red mulch, whereas black mulch reflected less than 5 percent of any color. Soil temperatures and fruit yields were recorded for tomato plants inoculated with Meloidogyn...

  19. Transcriptome Analysis of Resistant and Susceptible Alfalfa Cultivars Infected With Root-Knot Nematode Meloidogyne incognita

    OpenAIRE

    Postnikova, Olga A.; Hult, Maria; Shao, Jonathan; Skantar, Andrea; Nemchinov, Lev G.

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute...

  20. Caracterização genética e molecular de acessos de bananeira a Radopholus similis e Meloidogyne incognita

    OpenAIRE

    Santos, Jansen Rodrigo Pereira

    2011-01-01

    A cultura da bananeira tem grande importância econômica e social em todo o mundo. O Brasil é o quarto produtor mundial de banana, sendo esta cultivada de Norte a Sul do País e, praticamente toda produção é comercializada no mercado interno. Problemas fitossanitários de variadas etiologias reduzem a vida útil dos plantios e levam a perdas na produção e na qualidade dos frutos. Dentre os fitonematoides, Radopholus similis, Meloidogyne incognita, M. javanica, M. arenaria, Helicotylenchus multici...

  1. Resistance of Newly Introduced Vegetables to Meloidogyne arenaria and M. incognita in Korea

    Directory of Open Access Journals (Sweden)

    Donggeun Kim

    2013-12-01

    Full Text Available To select resistant vegetables against two species of root-knot nematodes, M. incognita and M. arenaria, 39 vegetables belongs to 7 families, 13 genera, 25 species were screened in greenhouse pot test. Susceptible vegetables to both nematodes were amarath and leaf beet in Amaranthaceae, Malabar spinach in Basellaceae, Moroheiya in Tiliaceae, and Water-convolvulus in Convolvulaceae, Pak-choi in Brassica campestris var. chinensis, Tah tasai in B. campestris var. narinosa, B. campestris var. chinensis x narinosa, Leaf mustard, Mustard green in B. juncea, Kyona in B. juncea var. laciniate, Choy sum in B. rapa subsp. arachinenesis, Kairan in B. oleracea var. alboglabra, Arugula in Eruca sativa, Garland chrysanthemum in Chrysanthemum coronarium, Endive in Cichorium endivia, Artichoke in Cynara cardunculus var. scolymus, Lettuce in Lactuca sativa. Resistant to M. arenaria but susceptible to M. incognita were B. oleracea cv. Matjjang kale, B. oleracea var. gongyloides cv. Jeok kohlrabi, and C. intybus cv. Radicchio. Resistant vegetables to both nematodes were C. intybus cv. Sugar loaf, Grumoro, Radichio treviso, B. oleracea cv. Manchu collard, Super matjjang, B. oleracea italica, B. oleracea var. botrytis italiana, and Perilla in Lamiaceae. Vegetables resistant to both species of root-knot nematodes could be used as high-valued rotation crops in greenhouses where root-knot nematodes are problem.

  2. Grafted eggplant yield, quality and growth in infested soil with Verticillium dahliae and Meloidogyne incognita Produção, qualidade e crescimento de beringela enxertada, em solo infestado com Verticillium dahliae e Meloidogyne incognita

    Directory of Open Access Journals (Sweden)

    Sebahattin Çürük

    2009-12-01

    Full Text Available The objective of this work was to evaluate the effect of grafting (onto Solanum torvum Sw. on plant growth, yield and fruit quality of the Pala and Faselis eggplant (Solanum melongena L. cultivars, grown in a soil infested with Verticillium dahliae Kleb. and Meloidogyne incognita, or in noninfested soil. Soil infestation decreased yield, plant height, final above-ground biomass, and also reduced fruit mean weight and shoot dry weight depending on cultivar or grafting. Grafting decreased fruit oxalic acid and the soluble solid contents, and increased mean fruit weight, depending on cultivar and soil infestation. Grafting also reduced the negative effects of the pathogens on disease index, plant height and shoot dry weight. Cultivar Pala was more vigorous than Faselis, and S. torvum was a vigorous rootstock. The combination of a vigorous rootstock with a weak cultivar (Faselis is more profitable than that of a vigorous rootstock and a vigorous cultivar (Pala. Using S. torvum as a rootstock for cultivar Faselis, grown in soil infested with the pathogens, is most likely to be useful in conventional and low-input sustainable horticulture, since grafting increases protection against the pathogens, and reduces the losses in quality and yield.O objetivo deste trabalho foi avaliar o efeito sobre a altura de planta, a produção e a qualidade de frutos do enxerto das cultivares de beringela (Solanum melongena L. Pala e Faselis em Solanum torvum Sw., quando cultivadas em solo infestado com Verticillium dahliae e Meloidogyne incognita ou em solo não infestado. A infestação do solo reduziu a produção, altura da planta, biomassa da parte aérea, massa média dos frutos, massa de matéria seca da parte aérea, conforme a cultivar utilizada e a enxertia. A enxertia reduziu os conteúdos de ácido oxálico e de sólidos solúveis e aumentou a massa média de frutos, conforme a cultivar ou a presença do patógeno no solo. A enxertia também reduziu o efeito

  3. Controle alternativo de nematoide das galhas (Meloidogyne incognita raça 2, com óleos essenciais em solo

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    Francisco José Carvalho Moreira

    2015-09-01

    Full Text Available A ação de produtos naturais sobre fitopatógenos tem sido investigada visando-se avaliar sua eficácia no controle alternativo de doenças, principalmente na agricultura orgânica. O objetivo desse trabalho foi avaliar o efeito dos óleos essenciais de alecrim pimenta (Lippia sidoides e capim citronela (Cymbopogonwinterianus no controle de Meloidogyne incognita raça 2, em tomate (Solanumlycopersicum e celósia (Celosia plicata. Para tanto, conduziu-se ensaio em esquema fatorial 6 x 2, com cinco repetições. O ensaio foi realizado em casa de vegetação do Setor de Fitossanidade do Departamento de Fitotecnia/CCA/UFC, no período de abril a junho de 2007. As mudas utilizadas neste ensaio foram transplantadas para vasos plástico contendo 2 kg de solo estéril, nos quais, 24 horas após o transplantio, foram inoculados com 4.000 ovos/J2 de M. incognita, raça 2, exceto as testemunhas negativas. Em 50% do número de vasos, aplicou-se, logo em seguida, 100 ml das soluções de cada óleo essencial em cada vaso na concentração de 2,5 ml L-1. Esperaram-se mais 48 horas para aplicação da mesma quantidade nos vasos restantes. Este volume corresponde a 60% da capacidade de campo desse substrato, que foi previamente calculada. A avaliação final do ensaio deu-se aos 45 dias após a inoculação. Analisou-se em relação ao nematoide: número de galhas (NG, número de ovos (NO, índice de massas de ovos (IMO, fator de reprodução (FR, redução no fator de reprodução (RFR. Quanto ao desenvolvimento das plantas mensurou-se: altura da planta, massa fresca e seca da parte aérea e massa fresca do sistema radicular. Verificou-se que a reprodução do nematoide, mostrou-se menos eficiente em tomate. Os óleos essenciais empregados reduziram a taxa reprodutiva do nematoide em 83 e 29%, em tomate e celósia, respectivamente. As épocas de aplicação dos óleos essenciais diferiram quanto à reprodução do nematoide, para número de galhas e fator de

  4. Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

    DEFF Research Database (Denmark)

    Shukla, Neha; Yadav, Rachita; Kaur, Pritam

    2017-01-01

    Root knot nematodes (RKNs, Meloidogyne incognita) are economically important endoparasites having a wide-host range. We have taken a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time intervals from susceptible p...

  5. Coupling of MIC-3 overexpression with the chromosome 11 and 14 root-knot nematode (RKN) (Meloidogyne incognita) resistance QTLs provides insights into the regulation of the RKN resistance response in Upland cotton...

    Science.gov (United States)

    High levels of resistance to root-knot nematode (RKN) (Meloidogyne incognita) in Upland cotton (Gossypium hirsutum) is mediated by two major quantitative trait loci (QTL) located on chromosomes 11 and 14. We had previously determined that MIC-3 expression played a direct role in suppressing RKN egg...

  6. Meloidogyne incognita Fatty Acid- and Retinol- Binding Protein (Mi-FAR-1 Affects Nematode Infection of Plant Roots and the Attachment of Pasteuria penetrans Endospores

    Directory of Open Access Journals (Sweden)

    Victor Phani

    2017-11-01

    Full Text Available Root-knot nematode (RKN Meloidogyne incognita is an economically important pest of crops. Pasteuria penetrans, is a nematode hyperparasitic bacterium capable of suppressing the reproduction of RKN and thereby useful for its management. Secreted fatty acid and retinol-binding proteins are unique in nematodes and are engaged in nutrient acquisition, development and reproduction; they are also a component of the nematode cuticle and thought to be involved in the interface between hosts and parasites. Attachment of endospores to the cuticle of second stage juveniles of RKN is the primary step of infection and several factors have been identified to facilitate attachment. In this study, the full length of Mi-far-1 (573 bp was cloned from M. incognita and characterized. Analysis revealed that the Mi-far-1 was rich in α-helix structure, contained a predicted consensus casein kinase II phosphorylation site and a glycosylation site. Quantitative PCR showed the highest expression in the fourth stage juveniles and in situ hybridization revealed the presence of Mi-far-1 mRNA in the hypodermis below the cuticle. Single copy insertion pattern of Mi-far-1 in M. incognita genome was detected by Southern blotting. Knockdown of Mi-far-1 showed significantly increased attachment of P. penetrans’ endospores on juvenile cuticle surface and also affected host finding, root infection and nematode fecundity.

  7. Analysis of Gene expression in soybean (Glycine max roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways

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    Gamal El-Din Abd El Kader Y

    2011-05-01

    Full Text Available Abstract Background Root-knot nematodes are sedentary endoparasites that can infect more than 3000 plant species. Root-knot nematodes cause an estimated $100 billion annual loss worldwide. For successful establishment of the root-knot nematode in its host plant, it causes dramatic morphological and physiological changes in plant cells. The expression of some plant genes is altered by the nematode as it establishes its feeding site. Results We examined the expression of soybean (Glycine max genes in galls formed in roots by the root-knot nematode, Meloidogyne incognita, 12 days and 10 weeks after infection to understand the effects of infection of roots by M. incognita. Gene expression was monitored using the Affymetrix Soybean GeneChip containing 37,500 G. max probe sets. Gene expression patterns were integrated with biochemical pathways from the Kyoto Encyclopedia of Genes and Genomes using PAICE software. Genes encoding enzymes involved in carbohydrate and cell wall metabolism, cell cycle control and plant defense were altered. Conclusions A number of different soybean genes were identified that were differentially expressed which provided insights into the interaction between M. incognita and soybean and into the formation and maintenance of giant cells. Some of these genes may be candidates for broadening plants resistance to root-knot nematode through over-expression or silencing and require further examination.

  8. Identification for the First Time of Cyclo(d-Pro-l-Leu Produced by Bacillus amyloliquefaciens Y1 as a Nematocide for Control of Meloidogyne incognita

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    Qaiser Jamal

    2017-10-01

    Full Text Available The aim of the current study was to describe the role and mechanism of Bacillus amyloliquefaciens Y1 against the root-knot nematode, Meloidogyne incognita, under in vitro and in vivo conditions. Initially, the exposure of the bacterial culture supernatant and crude extract of Y1 to M. incognita significantly inhibited the hatching of eggs and caused the mortality of second-stage juveniles (J2, with these inhibitory effects depending on the length of incubation time and concentration of the treatment. The dipeptide cyclo(d-Pro-l-Leu was identified in B. amyloliquefaciens culture for the first time using chromatographic techniques and nuclear magnetic resonance (NMR 1H, 13C, H-H COSY, HSQC, and HMBC and recognized to have nematocidal activity. Various concentrations of cyclo(d-Pro-l-Leu were investigated for their effect on the hatching of eggs and J2 mortality. Moreover, the in vivo nematocidal activity of the Y1 strain was investigated by conducting pot experiments in which tomato plants were inoculated with M. incognita. Each and every pot was amended 50 mL of fertilizer media (F, or Y1 culture, or nematicide (N (only once, or fertilizer media with N (FN at 1, 2, 3, 4 and 5 weeks after transplantation. The results of the pot experiments demonstrated the antagonistic effect of B. amyloliquefaciens Y1 against M. incognita as it significantly decreases the count of eggs and galls per root of the tomato plant as well as the population of J2 in the soil. Besides, the investigation into the growth parameters, such as the length of shoot, shoot fresh and dry weights of the tomato plants, showed that they were significantly higher in the Y1 strain Y1-treated plants compared to F-, FN- and N-treated plants. Therefore, the biocontrol repertoire of this bacterium opens a new insight into the applications in crop pest control.

  9. Identification for the First Time of Cyclo(d-Pro-l-Leu) Produced by Bacillus amyloliquefaciens Y1 as a Nematocide for Control of Meloidogyne incognita.

    Science.gov (United States)

    Jamal, Qaiser; Cho, Jeong-Yong; Moon, Jae-Hak; Munir, Shahzad; Anees, Muhammad; Kim, Kil Yong

    2017-10-27

    The aim of the current study was to describe the role and mechanism of Bacillus amyloliquefaciens Y1 against the root-knot nematode, Meloidogyne incognita, under in vitro and in vivo conditions. Initially, the exposure of the bacterial culture supernatant and crude extract of Y1 to M. incognita significantly inhibited the hatching of eggs and caused the mortality of second-stage juveniles (J2), with these inhibitory effects depending on the length of incubation time and concentration of the treatment. The dipeptide cyclo(d-Pro-l-Leu) was identified in B. amyloliquefaciens culture for the first time using chromatographic techniques and nuclear magnetic resonance (NMR ¹H, 13 C, H-H COSY, HSQC, and HMBC) and recognized to have nematocidal activity. Various concentrations of cyclo(d-Pro-l-Leu) were investigated for their effect on the hatching of eggs and J2 mortality. Moreover, the in vivo nematocidal activity of the Y1 strain was investigated by conducting pot experiments in which tomato plants were inoculated with M. incognita. Each and every pot was amended 50 mL of fertilizer media (F), or Y1 culture, or nematicide (N) (only once), or fertilizer media with N (FN) at 1, 2, 3, 4 and 5 weeks after transplantation. The results of the pot experiments demonstrated the antagonistic effect of B. amyloliquefaciens Y1 against M. incognita as it significantly decreases the count of eggs and galls per root of the tomato plant as well as the population of J2 in the soil. Besides, the investigation into the growth parameters, such as the length of shoot, shoot fresh and dry weights of the tomato plants, showed that they were significantly higher in the Y1 strain Y1-treated plants compared to F-, FN- and N-treated plants. Therefore, the biocontrol repertoire of this bacterium opens a new insight into the applications in crop pest control.

  10. Evaluation of Verticilum Chlamydosporium and Arrthrobotrys for Biological Control of Meloidogyne Incognita in Celery and Tomato

    International Nuclear Information System (INIS)

    Nyongesa, W.M.

    2002-01-01

    The ability of nematode trapping fungi and egg-parasitic fungi to colonize and persist in the rhizosphere of crop plants is thought to be an important factor influencing the success of bi logical control of root infecting nematodes. In this study, two strains of an egg parasite fungus Verticillium chlamydosporium (Vc-10 and Vc-2M) and an isolate of the nematode-trapping fungus Arthrobotrys oligospora and persistence in the rhizosphere and tomato plants in a green house pot experiment. The isolates tested differed in their pathogenicity to M. incognita and survival in the rhizosphere. An isolate of Verticillum chlamydosporium (Vc-10) was the most virulent pathogen of the nematode. Root galling was slowest in tomato plants treated with V-10 (2.2); pots treated with this isolate had the lowest final soil population of infective juveniles; there was a 62.2% and 98.5% infections of eggs and egg masses respectively by Vc-10 on tomato plants. The two isolates of Verticillium chlamydosporium (Vc-10 and Vc2M) persisted in the soil and could be re-isolated from the rhizosphere and roots of tomato plants at least 16 weeks after soil application. The final inoculum density was, however higher for Vc-10 (1.35x10 5 cfu/g soil) than Vc-2M (9.25x10 4 cfu/g soil). Arthrobotrys oligospora on the other hand did not give any significant control of the nematode on both crops, there was severe galling on the roots of plants treated with this agent. It could not be re-isolated from the plant rhizosphere sixteen weeks after soil infestation. Lack of nematode control on both crops by A.oligo spora was attributed to it's poor on establishment in the plant rhizosphere; low density and roots penetration by infective juveniles before they were ensnared in the trapping devices of this fungal biocontrol agent. The fact that it could not be re-isolated from the rhizosphere may imply that the fungus did not survive in the rhizosphere in quantities enough to enhance nematode control

  11. Optimization of In Vitro Techniques for Distinguishing between Live and Dead Second Stage Juveniles of Heterodera glycines and Meloidogyne incognita.

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    Ni Xiang

    Full Text Available Heterodera glycines (Soybean Cyst nematode, or SCN and Meloidogyne incognita (Root-Knot nematode, or RKN are two damaging plant-parasitic nematodes on important field crops. Developing a quick method to distinguish between live and dead SCN and RKN second stage juveniles (J2 is vital for high throughput screening of pesticides or biological compounds against SCN and RKN. The in vitro assays were conducted in 96-well plates to determine the optimum chemical stimulus to distinguish between live and dead SCN and RKN J2. Sodium carbonate (Na2CO3, sodium bicarbonate (NaHCO3, and sodium hydroxide (NaOH were evaluated for the nematode response to see if these compounds can help distinguish between viable from the dead J2. Results indicated that live SCN J2 responded equally (P ≤ 0.05 to 1 μl Na2CO3 and 10 μl NaHCO3 in 100 μl of water at pH = 10. Live SCN J2 responded by twisting their bodies in a curling shape and increasing rate of movements within 2 minutes of exposure. The twisting activity continued for up to 30 minutes. Live RKN J2 responded by increasing activity with the application of 1 μl NaOH in 100 μl of water at pH = 10 also in the 2 minutes to 30 minutes time frame. Furthermore, in growth chamber tests to confirm the infectivity of live SCN. The live SCN as determined by exposure to 1 μl of Na2CO3 indicated 60.5% of the SCN J2 were alive and of those, 29.5% were infective and entered the soybean roots. The 1 μl of NaOH stimulus revealed that 75.2% RKN J2 were alive and of those, 14.9% were infective and entered soybean roots. These results confirmed that 1 μl of Na2CO3 added to 100 μl suspension of SCN J2 and 1 μl of NaOH added to 100 μl suspension of RKN J2 are the effective stimuli for rapidly distinguishing between live and dead SCN and RKN J2 in vitro. SCN and RKN J2 responded differently to different compounds.

  12. Hospitability of ornamental and medicinal plants to root-knot nematode (Meloidogyne incognita race 2

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    Francisco José Carvalho Moreira

    2017-10-01

    Full Text Available The correct identification of species and genus of nematodes that affect a particular culture is of great importance to form a quantity of information that will be useful to laboratories for diagnosis and control of these pathogens. Because of the increase in the production of ornamental and medicinal plants in the of Cear. á State, the agricultural importance of the genus Meloidogyne and the scarcity of information on the hospitability this pathogen in these species, in that it was to evaluate the susceptibility testing of 30 species, and 20 ornamental (Antirrhimum majus, Gazania ringens, Carthamus tinctorius, Bryophyllum cayicinum, Ceasalpinia pulcherrima, Thumbergia alata, Petunia hibryda, Exacum affine, Catharanthus roseus, Opuntia sp., Sansevieria trifasciata, Asparagus densiflorus, Hibiscus mutabilis-roreus, Impatiens balsamiana, Celosia spicata, Antirrhimum sp., Dianthus chinensis, Zinnia elegans, Tagetes patula, Capsicum annuum and 10 medicinal (Peumus boldus, Ocimum gratissimum, Mentha arvensis var. piperascens, Mentha x Vilosa, Plectranthus amboinicus, Ocimum bassilicum, Rosmarinus officinalis, Cymbopogon citratus, Lippia alba, Cymbopogon winterianus. The test was conducted in a greenhouse, of the Phytosanitary Sector, Department of Plant Science, Federal University of Ceará. The inoculation was conducted with 4,000 eggs/J2 for pot. Evaluation of the plants gave to 60 days after inoculation. Evaluated is the reaction of the plants, measuring up: number of galls and eggs, egg mass index, reproduction factor and reduce the reproduction factor. From these variables it was classified the reaction of plants to the nematode by means of five criterions. Of ownership of the results, it was verified that of the ornamental plants only species T. patula didn’t presented galls in your root system. Concerning medicinal species M. vilosa, C. citrates, L. alba, C. winterianus and P. boldus showed no galls in their root systems. Thus, concluded

  13. Evaluation of biological nematicides on the control of root-knot nematode (Meloidogyne incognita Chitwood at protected crops house in tomato (Lycopersicon esculentum Mill.

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    Pedro Fidel Fuentes Chaviano

    2011-06-01

    Full Text Available This research was carried out on Tomato (Lycopersicon esculentum Mill. variety HA 3105 at the protected crops houses in Empresa Azucarera Melanio Hernández of Sancti Spiritus, located at the southwest of Tuinucú, from November 2009 to May 2010 with the objective of evaluating the effectiveness of biological nematicides on the control of the root-knot nematode, Meloidogyne incognita Chitwood. Three treatments were used: Agrocelhone, biological nematicide HeberNem and HeberNem + Trichoderma. Biological nematicides showed better results than Agrocelhone regarding the length of the leaf, the height of the plant, the yield of tomato and the control of nematodes HeberNem showed the best results in the control of the nematode, decreasing the infestation from degree V to degree II.

  14. Heterologous expression of taro cystatin protects transgenic tomato against Meloidogyne incognita infection by means of interfering sex determination and suppressing gall formation.

    Science.gov (United States)

    Chan, Yuan-Li; Yang, Ai-Hwa; Chen, Jen-Tzu; Yeh, Kai-Wun; Chan, Ming-Tsair

    2010-03-01

    Plant-parasitic nematodes are a major pest of many plant species and cause global economic loss. A phytocystatin gene, Colocasia esculenta cysteine proteinase inhibitor (CeCPI), isolated from a local taro Kaosiang No. 1, and driven by a CaMV35S promoter was delivered into CLN2468D, a heat-tolerant cultivar of tomato (Solanum lycopersicum). When infected with Meloidogyne incognita, one of root-knot nematode (RKN) species, transgenic T1 lines overexpressing CeCPI suppressed gall formation as evidenced by a pronounced reduction in gall numbers. In comparison with wild-type plants, a much lower proportion of female nematodes without growth retardation was observed in transgenic plants. A decrease of RKN egg mass in transgenic plants indicated seriously impaired fecundity. Overexpression of CeCPI in transgenic tomato has inhibitory functions not only in the early RKN infection stage but also in the production of offspring, which may result from intervention in sex determination.

  15. Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Medina, Clémence; da Rocha, Martine; Magliano, Marc; Ratpopoulo, Alizée; Revel, Benoît; Marteu, Nathalie; Magnone, Virginie; Lebrigand, Kevin; Cabrera, Javier; Barcala, Marta; Silva, Ana Cláudia; Millar, Anthony; Escobar, Carolina; Abad, Pierre; Favery, Bruno; Jaubert-Possamai, Stéphanie

    2017-11-01

    Root knot nematodes (RKN) are root parasites that induce the genetic reprogramming of vascular cells into giant feeding cells and the development of root galls. MicroRNAs (miRNAs) regulate gene expression during development and plant responses to various stresses. Disruption of post-transcriptional gene silencing in Arabidopsis ago1 or ago2 mutants decrease the infection rate of RKN suggesting a role for this mechanism in the plant-nematode interaction. By sequencing small RNAs from uninfected Arabidopsis roots and from galls 7 and 14 d post infection with Meloidogyne incognita, we identified 24 miRNAs differentially expressed in gall as putative regulators of gall development. Moreover, strong activity within galls was detected for five miRNA promoters. Analyses of nematode development in an Arabidopsis miR159abc mutant had a lower susceptibility to RKN, suggesting a role for the miR159 family in the plant response to M. incognita. Localization of mature miR159 within the giant and surrounding cells suggested a role in giant cell and gall. Finally, overexpression of miR159 in galls at 14 d post inoculation was associated with the repression of the miR159 target MYB33 which expression is restricted to the early stages of infection. Overall, these results implicate the miR159 in plant responses to RKN. © 2017 INRA. New Phytologist © 2017 New Phytologist Trust.

  16. Salicylic acid-induced glutathione status in tomato crop and resistance to root-knot nematode, Meloidogyne incognita (Kofoid & White Chitwood

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    Hari C. Meher

    2011-10-01

    Full Text Available Salicylic acid-(SA is a plant defense stimulator. Exogenous application of SA might influence the status of glutathione-(GSH. GSH activates and SA alters the expression of defense genes to modulate plant resistance against pathogens. The fate of GSH in a crop following SA treatment is largely unknown. The SA-induced profiles of free reduced-, free oxidized-(GSSG and protein bound-(PSSG glutathione in tomato crop following foliar treatment of transplant at 5.0-10.0 μg mL–1 were measured by liquid chromatography. Resistance to root-knot nematode, Meloidogyne incognita damaging tomato and crop performance were also evaluated. SA treatment at 5.0-10.0 μg mL–1 to tomato transplants increased GSH, GSSG and PSSG in plant leaf and root, more so in leaf, during crop growth and development. As the fruits ripened, GSH and PSSG increased and GSSG declined. SA reduced the root infection by M. incognita, nematode reproduction and thus, improved the resistance of tomato var. Pusa Ruby, but reduced crop growth and redox status. SA at 5.0 μg mL–1 improved yield and fruit quality. The study firstly linked SA with activation of glutathione metabolism and provided an additional dimension to the mechanism of induced resistance against obligate nematode pathogen. SA increased glutathione status in tomato crop, imparted resistance against M. incognita, augmented crop yield and functional food quality. SA can be applied at 5.0 μg mL–1 for metabolic engineering of tomato at transplanting to combine host-plant resistance and health benefits in formulating a strategic nematode management decision.

  17. Overexpression of the Prunus sogdiana NBS-LRR Subgroup Gene PsoRPM2 Promotes Resistance to the Root-Knot Nematode Meloidogyne incognita in Tobacco

    Science.gov (United States)

    Zhu, Xiang; Xiao, Kun; Cui, Haiyang; Hu, Jianfang

    2017-01-01

    Root-knot nematodes (RKNs), particularly Meloidogyne incognita, are the most devastating soil-borne pathogens that significantly affect the production of Prunus spp. fruit. RKN infection is difficult to control and consequently causes massive yield losses each year. However, several germplasms of wild Prunus spp. have been shown to display resistance to M. incognita. Consequently, both the isolation of novel plant resistance (R) genes and the characterization of their resistance mechanisms are important strategies for future disease control. R proteins require the co-chaperone protein HSP90-SGT1-RAR1 to achieve correct folding, maturation, and stabilization. Here, we used homologous cloning to isolate the R gene PsoRPM2 from the RKN-resistant species Prunus sogdiana. PsoRPM2 was found to encode a TIR-NB-LRR-type protein and react with significantly elevated PsoRPM2 expression levels in response to RKN infection. Transient expression assays indicated PsoRPM2 to be located in both the cytoplasm and the nucleus. Four transgenic tobacco lines that heterologously expressed PsoRPM2 showed enhanced resistance to M. incognita. Yeast two-hybrid analysis and bimolecular fluorescence complementation analysis demonstrated that both PsoRAR1 and PsoRPM2 interacted with PsoHSP90-1 and PsoSGT1, but not with one another. These results indicate that the observed PsoRPM2-mediated RKN resistance requires both PsoHSP90-1 and PsoSGT1, further suggesting that PsoRAR1 plays a functionally redundant role in the HSP90-SGT1-RAR1 co-chaperone. PMID:29163405

  18. Overexpression of the Prunus sogdiana NBS-LRR Subgroup Gene PsoRPM2 Promotes Resistance to the Root-Knot Nematode Meloidogyne incognita in Tobacco

    Directory of Open Access Journals (Sweden)

    Xiang Zhu

    2017-10-01

    Full Text Available Root-knot nematodes (RKNs, particularly Meloidogyne incognita, are the most devastating soil-borne pathogens that significantly affect the production of Prunus spp. fruit. RKN infection is difficult to control and consequently causes massive yield losses each year. However, several germplasms of wild Prunus spp. have been shown to display resistance to M. incognita. Consequently, both the isolation of novel plant resistance (R genes and the characterization of their resistance mechanisms are important strategies for future disease control. R proteins require the co-chaperone protein HSP90-SGT1-RAR1 to achieve correct folding, maturation, and stabilization. Here, we used homologous cloning to isolate the R gene PsoRPM2 from the RKN-resistant species Prunus sogdiana. PsoRPM2 was found to encode a TIR-NB-LRR-type protein and react with significantly elevated PsoRPM2 expression levels in response to RKN infection. Transient expression assays indicated PsoRPM2 to be located in both the cytoplasm and the nucleus. Four transgenic tobacco lines that heterologously expressed PsoRPM2 showed enhanced resistance to M. incognita. Yeast two-hybrid analysis and bimolecular fluorescence complementation analysis demonstrated that both PsoRAR1 and PsoRPM2 interacted with PsoHSP90-1 and PsoSGT1, but not with one another. These results indicate that the observed PsoRPM2-mediated RKN resistance requires both PsoHSP90-1 and PsoSGT1, further suggesting that PsoRAR1 plays a functionally redundant role in the HSP90-SGT1-RAR1 co-chaperone.

  19. IDENTIFICACIÓN MORFOLÓGICA, MORFOMÉTRICA Y MOLECULAR DE Meloidogyne incognita EN HIGUERA (Ficus carica L. EN COSTA RICA

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    Walter Peraza-Padilla

    2013-01-01

    Full Text Available El objetivo de este estudio fue identificar la especie de Meloidogyne asociada a dos plantaciones de higuera en Costa Rica. En marzo de 2012, en el distrito de Pacayas, provincia de Cartago, se detectaron agallas en los sistemas radicales de plantas de higuera (Ficus carica L. de dos fincas. De las raíces agalladas se extrajeron hembras, masas de huevos y juveniles (J2 de Meloidogyne sp. Se examinaron los patrones perineales de las hembras y los segundos estadios infectivos se analizaron morfológica y molecularmente mediante PCR-RFLP. Se amplificó la región intergénica (IGS del genoma mitocondrial, delimitada por el gen de la subunidad II de la citocromo oxidasa (COII y el gen ribosomal 16S. La población de nematodos se identificó como M. incognita. El tamaño de los productos de PCR generados con los imprimadores C2F3 y 1108 fue de 1,7 kb. Al tratar los productos de PCR con enzimas de restricción, se generaron cuatro fragmentos de 850, 450, 250 y 150 pb con la enzima AluI y dos fragmentos de 1300 y 400 pb con la enzima HinfI.

  20. Activity of chalcones derived from 2,4,5-trimethoxybenzaldehyde against Meloidogyne exigua and in silico interaction of one chalcone with a putative caffeic acid 3-O-methyltransferase from Meloidogyne incognita.

    Science.gov (United States)

    Nunes, Alexandro Silva; Campos, Vicente Paulo; Mascarello, Alessandra; Stumpf, Taisa Regina; Chiaradia-Delatorre, Louise Domenghini; Machado, Alan Rodrigues Teixeira; Santos Júnior, Helvécio Martins; Yunes, Rosendo Augusto; Nunes, Ricardo José; Oliveira, Denilson Ferreira

    2013-12-01

    Meloidogyne exigua is a parasitic nematode of plants that causes great losses to coffee farmers. In an effort to develop parasitic controls, 154 chalcones were synthesized and screened for activity against this nematode. The best results were obtained with (2E)-1-(4'-nitrophenyl)-3-(2,4,5-trimethoxyphenyl)prop-2-en-1-one (6) with a 50% lethal concentration (LC50) of 171 μg/ml against M. exigua second-stage juveniles, in comparison to the commercially-available nematicide carbofuran which had an LC50 of 260 μg/ml under the same conditions. When coffee plants were used, 6 reduced the nematode population to ~50% of that observed in control plants. To investigate the mechanism of action of 6, an in silico study was carried out, which indicated that 6 may act against M. exigua through inhibition of a putative caffeic acid 3-O-methyltransferase homodimer, the amino acid sequence of which was determined by examining the genome of Meloidogyne incognita. Copyright © 2013 Elsevier Inc. All rights reserved.

  1. Antinematicidal Efficacy Of Root Exudates Of Some Crotalaria Species On Meloidogyne Incognita Root-Knot Nematode Kofoid And White Chitwood Isolated From Infected Lycopersicum Esculentum L.Tomato Plant

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    L.S Danahap

    2015-08-01

    Full Text Available The antinematicidal efficacies of exudates of four common weeds Crotalaria breviflora Crotalaria juncea Crotalaria retusa and Crotalaria spectabilis were carried out against Meloidogyne incognita. The young actively growing seedling of the common weeds were uprooted and taken to the laboratory for analyses. The root exudates of test plants were prepared by growing the young actively growing seedlings in test tubes wrapped with black carbon paper for five days under lighted florescent bulbs. Root exudates of Crotalaria breviflora Crotalaria juncea Crotalaria retusa and Crotalaria spectabilis exhibited nematicidal properties against the Meloidogyne incognita. The effects varied with concentrations of the exudates P0.05 using analysis of variance ANOVA. The effects also differed among test plants with Crotalaria retusa topping in terms of reduction in nematode population. This was followed by C.breviflora C.juncea and C.spectabilis respectively. The results thus confirmed that all the test plants are potentially viable trap weeds and can be used for the control of Meloidogyne incognita and should be employed as such.

  2. Host Delivered RNAi of Two Cuticle Collagen Genes, Mi-col-1 and Lemmi-5 Hampers Structure and Fecundity in Meloidogyne incognita

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    Sagar Banerjee

    2018-01-01

    Full Text Available Root-knot nematodes have emerged as devastating parasites causing substantial losses to agricultural economy worldwide. Tomato is the most favored host for major species of root-knot nematodes. Control strategies like use of nematicides have proved to be harmful to the environment. Other control methods like development of resistant cultivars and crop rotation have serious limitations. This study deals with the application of host generated RNA interference toward development of resistance against root-knot nematode Meloidogyne incognita in tomato. Two cuticle collagen genes viz. Mi-col-1 and Lemmi-5 involved in the synthesis and maintenance of the cuticle in M. incognita were targeted through host generated RNA interference. Expression of both Mi-col-1 and Lemmi-5 was found to be higher in adult females followed by egg masses and J2s. Tomato var. Pusa Ruby was transformed with the RNAi constructs of these genes to develop transgenic lines expressing the target dsRNAs. 30.80–35.00% reduction in the number of adult females, 50.06–65.73% reduction in the number of egg mass per plant and 76.47–82.59% reduction in the number of eggs per egg mass were observed for the T1 events expressing Mi-col-1 dsRNA. Similarly, 34.14–38.54% reduction in the number of adult females, 62.34–66.71% reduction in number of egg mass per plant and 67.13–79.76% reduction in the number of eggs per egg mass were observed for the T1 generation expressing Lemmi-5 dsRNA. The multiplication factor of M. incognita reduced significantly in both the cases and the structure of adult females isolated from transgenic plants were heavily distorted. This study demonstrates the role of the cuticle collagen genes Mi-col-1 and Lemmi-5 in the structure and development of M. incognita cuticle inside the host and reinforces the potential of host generated RNA interference for management of plant parasitic nematodes (PPNs.

  3. Inconsistency of the biological control of Meloidogyne incognita race 2 in melon by endophytic bacteria Inconsistência do controle biológico de Meloidogyne incognita raça 2 em meloeiro por bactérias endofíticas

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    Jeane E de Medeiros

    2009-09-01

    Full Text Available We obtained 61 rhizobacterium isolates from rhizosphere soil samples collected in melon commercial fields located in Mossoró, Rio Grande do Norte State, Brazil. These isolates, along with 56 endophytic bacteria from the Collection of Cultures of the Plant Bacteriology Laboratory of the Universidade Federal Rural de Pernambuco, were tested for controlling Meloidogyne incognita race 2 in melon. To infest the soil with nematodes, 1000 eggs of Meloidogyne incognita race 2 per plant were placed in pots where seedlings of the yellow-type melon, cultivar AF 682, were growing for 10 days. Two days before, 20 mL of bacterial suspension (0.7 OD570nm were poured into each pot. After 60 days, fresh root biomass, gall index, egg mass, and the nematode reproduction factor were assessed. Among the 117 isolates screened, the endophytic Bacillus ENM7, ENM10, and ENM51 were selected because they significantly reduced egg mass and/or gall index. However, when tested again, separately and in mixtures, these isolates nor confirmed their efficiency in vivo, neither affected juvenile emergence in vitro. These results give evidence on the inconsistency of using endophytic-bacteria in the control of M. incognita race 2 in melon.A partir de amostras de solo coletadas em plantios comerciais de meloeiro, situados em Mossoró-RN, foram obtidos 61 isolados de rizobactérias que, juntamente com outros 56 isolados endofíticos pertencentes à Coleção de Culturas do Laboratório de Fitobacteriologia da Universidade Federal Rural de Pernambuco, foram avaliados para o controle de Meloidogyne incognita raça 2 em melão. Plantas de meloeiro Amarelo, cultivar AF 682, com dez dias de idade tiveram o solo infestado com 1000 ovos de M. incognita raça 2 por planta. Dois dias antes, foram depositados em cada vaso 20 mL da suspensão bacteriana (DO570nm = 0,7. Decorridos 60 dias, foram determinados a biomassa fresca das raízes, os índices de galhas e de massa de ovos e o fator de

  4. Avaliação da resistência de genótipos de quiabeiro à infestação por Meloidogyne incognita raça 2 e M. javanica Resistance of okra genotypes to Meloidogyne incognita race 2 and M. javanica

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    Gilmar Efrem Martinello

    2001-07-01

    Full Text Available Vinte e dois genótipos de quiabeiro (Abelmoschus spp. foram avaliados para resistência à Meloidogyne incognita raça 2 e M. javanica. Estes materiais, mantidos no Banco de Germoplasma da Universidade Estadual do Norte Fluminense, constam de quatro espécies selvagens Abelmoschus manihot (CGO 8655, A. caillei (CGO 8656, A. tetraphyllus (CGO 8657 e A. ficulneus (CGO 8658; 16 linhas de A. esculentus na sétima geração de autofecundação, resultantes de inter-cruzamentos do genótipo PI-357991 (supostamente resistentes a nematóides com as cultivares Piranema e Santa Cruz 47. Essas cultivares serviram como padrão de suscetibilidade. As plantas foram inoculadas separadamente com 5.000 ovos/segundo estádio juvenil (J2 de M. incognita raça 2 e M. javanica. Não houve diferença significativa com relação à resistência dos materiais a M. javanica. Os genótipos descendentes de 'PI-357991' mostraram-se segregantes para a reação de resistência, sendo que entre estes 'CGO 8180A7' apresentou o maior nível de tolerância à raça 2 de M. incognita. As espécies silvestres também não mostraram alguma fonte de resistência. As altas temperaturas ocorridas no período do experimento, podem ter aumentado a suscetibilidade dos genótipos aos dois patógenos.Twenty two okra genotypes were evaluated for resistance to M. incognita race 2 and M. javanica. The Universidade Estadual do Norte Fluminense (Brazil maintains okra genotypes in the germplasm collection, consisting of four wild Abelmoschus species and 16 F7 lines obtained from crosses between PI-357991 (considered resistant to root-knot nematodes and the local cvs, Piranema and Santa Cruz 47 (both susceptible to nematodes. No resistance was observed among okra genotypes to infection by M. javanica. The 16 F7 lines segregated for pathogenic reaction, and the CGO 8180A7 presented the highest resistance level to M. incognita race 2. The wild species did not show genetic resistance to both

  5. RNAi-mediated disruption of neuropeptide genes, nlp-3 and nlp-12, cause multiple behavioral defects in Meloidogyne incognita.

    Science.gov (United States)

    Dash, Manoranjan; Dutta, Tushar K; Phani, Victor; Papolu, Pradeep K; Shivakumara, Tagginahalli N; Rao, Uma

    2017-08-26

    Owing to the current deficiencies in chemical control options and unavailability of novel management strategies, root-knot nematode (M. incognita) infections remain widespread with significant socio-economic impacts. Helminth nervous systems are peptide-rich and appear to be putative drug targets that could be exploited by antihelmintic chemotherapy. Herein, to characterize the novel peptidergic neurotransmitters, in silico mining of M. incognita genomic and transciptomic datasets revealed the presence of 16 neuropeptide-like protein (nlp) genes with structural hallmarks of neuropeptide preproproteins; among which 13 nlps were PCR-amplified and sequenced. Two key nlp genes (Mi-nlp-3 and Mi-nlp-12) were localized to the basal bulb and tail region of nematode body via in situ hybridization assay. Mi-nlp-3 and Mi-nlp-12 were greatly expressed (in qRT-PCR assay) in the pre-parasitic juveniles and adult females, suggesting the association of these genes in host recognition, development and reproduction of M. incognita. In vitro knockdown of Mi-nlp-3 and Mi-nlp-12 via RNAi demonstrated the significant reduction in attraction and penetration of M. incognita in tomato root in Pluronic gel medium. A pronounced perturbation in development and reproduction of NLP-silenced worms was also documented in adzuki beans in CYG growth pouches. The deleterious phenotypes obtained due to NLP knockdown suggests that transgenic plants engineered to express RNA constructs targeting nlp genes may emerge as an environmentally viable option to manage nematode problems in crop plants. Copyright © 2017 Elsevier Inc. All rights reserved.

  6. Nematicidal potential of aqueous extract of Hyptis suaveolens in the management of root-knot nematode, Meloidogyne incognita of some cowpea cultivars

    Directory of Open Access Journals (Sweden)

    S. A. Abolusoro

    2016-01-01

    Full Text Available Studies were conducted under field and screenhouse conditions to investigate the potentials of crude aqueous leaf extract of Hyptis suaveolens in the management of the root-knot nematode Meloidogyne incognita of three cowpea varieties (Sampea 9, 10 and 11. A Randomized Complete Block Design was used in the field while a completely randomized design was used for the screenhouse trials. Results showed that the treatment significantly (p < 0.05 improved the growth and yield of the three varieties and also reduced soil nematode population and root galls. It was also observed that all the three varieties were susceptible to the root-knot nematode infestation but Sampea 10 recorded higher yield that were significant in the pot trials. Phytochemical screening revealed the presence of saponins, alkaloids, flavonoids and steroids in the leaves of H. suaveolens. For higher yield of the evaluated cowpea varieties in a nematode endemic zone, aqueous leaf extract of H. suaveolens is being recommended for infested soil treatment.

  7. Effect of plant resistance and BioAct WG (Purpureocillium lilacinum strain 251) on Meloidogyne incognita in a tomato-cucumber rotation in a greenhouse.

    Science.gov (United States)

    Giné, Ariadna; Sorribas, Francisco J

    2017-05-01

    The effectiveness of combining resistant tomato with BioAct WG (Purpureocillium lilacinum strain 251, Pl251) against Meloidogyne incognita was assessed in a tomato-cucumber rotation in a greenhouse over 2 years. Additionally, the enzymatic activity of the fungus, the percentage of fungal egg and juvenile parasitism, cardinal temperatures and the effect of water potential on mycelial growth and the soil receptivity to Pl251 were determined in vitro. Plant resistance was the only factor that suppressed nematode and crop yield losses. Percentage of egg parasitism in plots treated with BioAct WG was less than 2.6%. However, under in vitro conditions, Pl251 showed protease, lipase and chitinase activities and parasitised 94.5% of eggs, but no juveniles. Cardinal temperatures were 14.2, 24-26 and 35.4 °C. The maximum Pl251 mycelial growth was at -0.25 MPa and 25 °C. Soil temperatures and water potential in the greenhouse were in the range of the fungus. However, soil receptivity was lower in greenhouse soil, irrespective of sterilisation, than in sterilised sand. Plant resistance was the only factor able to suppress nematode densities, disease severity and yield losses, and to protect the following cucumber crop. Environmental factors involved in soil receptivity could have negatively affected fungus effectiveness. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  8. Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Martínez-Medina, Ainhoa; Fernandez, Ivan; Lok, Gerrit B; Pozo, María J; Pieterse, Corné M J; Van Wees, Saskia C M

    2017-02-01

    Beneficial root endophytes such as Trichoderma spp. can reduce infections by parasitic nematodes through triggering host defences. Little is currently known about the complex hormone signalling underlying the induction of resistance. In this study, we investigated whether Trichoderma modulates the hormone signalling network in the host to induce resistance to nematodes. We investigated the role and the timing of the jasmonic acid (JA)- and salicylic acid (SA)-regulated defensive pathways in Trichoderma-induced resistance to the root knot nematode Meloidogyne incognita. A split-root system of tomato (Solanum lycopersicum) was used to study local and systemic induced defences by analysing nematode performance, defence gene expression, responsiveness to exogenous hormone application, and dependence on SA and JA signalling of Trichoderma-induced resistance. Root colonization by Trichoderma impeded nematode performance both locally and systemically at multiple stages of the parasitism, that is, invasion, galling and reproduction. First, Trichoderma primed SA-regulated defences, which limited nematode root invasion. Then, Trichoderma enhanced JA-regulated defences, thereby antagonizing the deregulation of JA-dependent immunity by the nematodes, which compromised galling and fecundity. Our results show that Trichoderma primes SA- and JA-dependent defences in roots, and that the priming of responsiveness to these hormones upon nematode attack is plastic and adaptive to the parasitism stage. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

  9. Reaction of vegetables and aromatic plants to Meloidogyne javanica and M. incognita Reação de hortaliças e plantas aromáticas aos nematoides Meloidogyne javanica e M. incognita

    Directory of Open Access Journals (Sweden)

    Cláudia Regina Dias-Arieira

    2012-06-01

    Full Text Available For this research we used 15 day-old seedlings which were transplanted to 2 L pots and inoculated with 4,000 nematode eggs plus juveniles (J2. After 60 days, the root systems were removed and the number of galls and eggs evaluated and used to calculate the nematode reproduction factor (RF. The tomato cv. Santa Cruz was used as a susceptible control. The experimental design was completely randomized, with six replications. Averages were compared using the Tukey or Scott-Knott test at 5%. For lettuce, Salad Bowl (Mimosa type, Elizabeth and Elisa (Lisa and Vera cultivars (crisphead, the number of galls and the RF for M. javanica were statistically higher than for the control, whereas, for the other vegetable crops, the highest number of galls and eggs were found in chicory and basil. The highest susceptibility to M. incognita was observed in Mimosa lettuce cv. Salad Bowl, chicory cultivars, parsley cv. Graúda Portuguesa and basil. Marjoram exhibited no M. incognita galls.Para avaliar a reação, mudas com 15 dias de idade foram transplantadas para vasos de 2 L de capacidade e inoculadas com 4.000 ovos e eventuais juvenis (J2 dos nematoides. Decorridos 60 dias, os sistemas radiculares foram retirados e avaliados quanto ao número de galhas e ovos, determinando-se o fator de reprodução (FR dos nematoides nas respectivas plantas. Tomateiro cv. Santa Cruz foi utilizado como testemunha. O experimento foi conduzido em delineamento inteiramente casualizado, com seis repetições, e as médias foram comparadas pelo teste Tukey ou Scott-Knott a 5% de probabilidade. Nas alfaces tipo Mimosa cv. Salad Bowl; nas cultivares do tipo Lisa, Elizabeth e Elisa; e na cultivar Vera (tipo crespa, o número de galhas e o FR de M. javanica foi superior ao observado para a testemunha; enquanto para as demais oleráceas, os maiores números de galhas e ovos foram para as cultivares de chicória e para o manjericão. Maior suscetibilidade a M. incognita foi observada para

  10. Morphological and Morphometrical Characterization of Meloidogyne incognita from Different Host Plants in Four Districts of Punjab, India.

    Science.gov (United States)

    Kaur, Harpreet; Attri, Rajni

    2013-06-01

    The population of M. incognita, the root knot nematode (RKN) was found infesting five different host plants (okra, banana, sunflower, bottle gourd, and brinjal) out of 24 examined from four districts of Punjab, India (Gurdaspur, Ludhiana, Patiala, and Hoshiarpur). Morphological and morphometrical characterization indicated that in the case of mature female, the characters of body length and width, neck length, ratio 'a', anus to tail terminus (ATT), interphasmid distance (IPD), and perineal pattern were recorded as stable characters. These taxonomic characters can be reliable for identification. All characters of second-stage juvenile (J2) such as body length, stylet length, head to median bulb length (H-MB), distance from median bulb to excretory pore (MB-EP), tail length, anal body width (ABW), and ratios C and C' were highly variable. Analysis of interpopulation morphometric characters of mature female of M. incognita, namely, body length, width, and ratio 'a' were moderately variable characters (CV 0.26% to 20%) and stylet length, neck length, length of median bulb (LMB), and width of median bulb (WMB) were highly variable (CV 1.0% to 36.1%). In the perineal pattern, the two characters ATT and IPD were moderately variable (CV 8.8% to 17.6%) and two characters, anus to vulval slit (AVS) and length of vulval slit (LVS), were highly variable (CV 2.1% to 40.5%). In J2, body length, stylet length, H-MB, MB-EP, ABW, tail length, ratios C, and C' were highly variable characters (CV > 12%).

  11. Process development of oxalic acid production in submerged culture of Aspergillus niger F22 and its biocontrol efficacy against the root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Lee, Sang Il; Lee, Keon Jin; Chun, Ho Hyun; Ha, Sanghyun; Gwak, Hyun Jung; Kim, Ho Myeong; Lee, Jong-Hee; Choi, Hak-Jong; Kim, Hyeong Hwan; Shin, Teak Soo; Park, Hae Woong; Kim, Jin-Cheol

    2018-03-01

    Oxalic acid has potent nematicidal activity against the root-knot nematode Meloidogyne incognita. In this study, fermentation parameters for oxalic acid production in submerged culture of Aspergillus niger F22 at 23, 25, and 30 °C were optimized in 5-L jar fermenters. The viscosity of the culture broth increased with increasing temperature. There was a negative correlation between oxalic acid production and the apparent viscosity; high volumetric productivity of oxalic acid was obtained at low apparent viscosity (less than 1000 cP), with a productivity of more than 100 mg/L h. When the apparent viscosity was over 2500 cP, the volumetric productivity decreased below 50 mg/L h. In addition, the volumetric mass transfer coefficient, K L a, positively correlated with volumetric productivity. When the K L a value increased from 0.0 to 0.017 /s, the volumetric productivity proportionally increased up to 176 mg/L h. When the temperature decreased, K L a increased due to the decrease in viscosity, leading to increased volumetric productivity. The highest productivity of 7453.3 mg/L was obtained at the lowest temperature, i.e., 23 °C. The nematicidal activity of culture filtrate was proportional to the content of oxalic acid. Based on a constant impeller tip speed, oxalic acid production was successfully scaled up to a 500-L pilot vessel, producing a final concentration comparable to that in the 5-L jar.

  12. Wheat bran soil inoculant of sumateran nematode-trapping fungi as biocontrol agents of the root-knot nematode meloidogyne incognita on deli tobacco (nicotiana tabaccum l) cv. deli 4

    Science.gov (United States)

    Dwi Sri Hastuti, Liana; Faull, Jane

    2018-03-01

    A pot experiment was carried out to test the effectiveness of nematode-trapping fungi (NTF) isolated from Sumatera for controlling infection by the root-knot nematode (RKN) on Deli tobacco plant. Wheat bran soil containing 109 conidia of Arthrobotrys. oligospora, Candellabrella musiformis and Dactylella eudermata was added to the soil as a dry inoculum. Carbofuran was also applied as chemical agent and comparison treatment. Seedling tobacco (Nicotiana tabacum L.) cv. Deli 4 was inoculated with root knot (Meloidogyne incognita Chitwood.) seven days after the plant were transplanted to the pots. A. oligospora, C. musiformis and D. eudermata were found to be reliable as biocontrol agents, reducing the number of vermiform nematodes, swollen root, sausage shaped and galls in tobacco plant after 7, 15 and 30 days of infection with M. incognita. Treatment with NTF produced results that were comparable with Carbofuran® as a control agent in the reduction of the number of infections in tobacco plant caused by M. incognita in Nicotiana tabacum var. Deli 4. They also optimize the growth of the tobacco plants especially up to 15 days after infection.

  13. Exposure to double-stranded RNA mediated by tobacco rattle virus leads to transcription up-regulation of effector gene Mi-vap-2 from Meloidogyne incognita and promotion of pathogenicity in progeny.

    Science.gov (United States)

    Chi, Yuankai; Wang, Xuan; Le, Xiuhu; Ju, Yuliang; Guan, Tinglong; Li, Hongmei

    2016-02-01

    Meloidogyne spp. are economically important plant parasites and cause enormous damage to agriculture world-wide. These nematodes use secreted effectors which modify host cells, allowing them to obtain the nutrients required for growth and development. A better understanding of the roles of effectors in nematode parasitism is critical for understanding the mechanisms of nematode-host interactions. In this study, Mi-vap-2 of Meloidogyne incognita, a gene encoding a venom allergen-like protein, was targeted by RNA interference mediated by the tobacco rattle virus. Unexpectedly, compared with a wild type line, a substantial up-regulation of Mi-vap-2 transcript was observed in juveniles collected at 7 days p.i. from Nicotiana benthamiana agroinfiltrated with TRV::vap-2. This up-regulation of the targeted transcript did not impact development of females or the production of galls, nor the number of females on the TRV::vap-2 line. In a positive control line, the transcript of Mi16D10 was knocked down in juveniles from the TRV::16D10 line at 7 days p.i., resulting in a significant inhibition of nematode development. The up-regulation of Mi-vap-2 triggered by TRV-RNAi was inherited by the progeny of the nematodes exposed to double-stranded RNA. Meanwhile, a substantial increase in Mi-VAP-2 expression in those juvenile progeny was revealed by ELISA. This caused an increase in the number of galls (71.2%) and females (84.6%) produced on seedlings of N. benthamiana compared with the numbers produced by control nematodes. Up-regulation of Mi-vap-2 and its encoded protein therefore enhanced pathogenicity of the nematodes, suggesting that Mi-vap-2 may be required for successful parasitism during the early parasitic stage of M. incognita. Copyright © 2015 Australian Society for Parasitology Inc. Published by Elsevier Ltd. All rights reserved.

  14. Evaluation of entomopathogenic nematodes and the supernatants of the in vitro culture medium of their mutualistic bacteria for the control of the root-knot nematodes Meloidogyne incognita and M. arenaria.

    Science.gov (United States)

    Kepenekci, Ilker; Hazir, Selcuk; Lewis, Edwin E

    2016-02-01

    The suppressive effects of various formulations of four entomopathogenic nematode (EPN) species and the supernatants of their mutualistic bacteria on the root-knot nematodes (RKNs) Meloidogyne incognita and M. arenaria in tomato roots were evaluated. The EPNs Steinernema carpocapsae, S. feltiae, S. glaseri and Heterorhabditis bacteriophora were applied as either live infective juveniles (IJs) or infected insect cadavers. Spent medium from culturing the bacterial symbionts Xenorhabdus bovienii and Photorhabdus luminescens kayaii with the cells removed was also applied without their nematode partners. The aqueous suspensions of IJs, infected cadaver applications of EPNs and especially treatments of X. bovienii supernatant suppressed the negative impact of RKNs on tomatoes. Specific responses to treatment were reduced RKN egg masses, increased plant height and increased fresh and dry weights compared with the control where only RKNs were applied. Among the treatments tested, the plant-dipping method of X. bovienii into bacterial culture fluid may be the most practical and effective method for M. incognita and M. arenaria control. © 2015 Society of Chemical Industry.

  15. Coupling of MIC-3 overexpression with the chromosomes 11 and 14 root-knot nematode (RKN) (Meloidogyne incognita) resistance QTLs provides insights into the regulation of the RKN resistance response in Upland cotton (Gossypium hirsutum).

    Science.gov (United States)

    Wubben, Martin J; Callahan, Franklin E; Jenkins, Johnie N; Deng, Dewayne D

    2016-09-01

    Genetic analysis of MIC-3 transgene with RKN resistance QTLs provides insight into the resistance regulatory mechanism and provides a framework for testing additional hypotheses. Resistance to root-knot nematode (RKN) (Meloidogyne incognita) in Upland cotton (Gossypium hirsutum) is mediated by two major quantitative trait loci (QTL) located on chromosomes 11 and 14. The MIC-3 (Meloidogyne Induced Cotton3) protein accumulates specifically within the immature galls of RKN-resistant plants that possess these QTLs. Recently, we showed that MIC-3 overexpression in an RKN-susceptible cotton genotype suppressed RKN egg production but not RKN-induced root galling. In this study, the MIC-3 overexpression construct T-DNA in the single-copy transgenic line '14-7-1' was converted into a codominant molecular marker that allowed the marker assisted selection of F2:3 cotton lines, derived from a cross between 14-7-1 and M-240 RNR, having all possible combinations of the chromosomes 11 and 14 QTLs with and without the MIC-3 overexpression construct. Root-knot nematode reproduction (eggs g(-1) root) and severity of RKN-induced root galling were assessed in these lines. We discovered that the addition of MIC-3 overexpression suppressed RKN reproduction in lines lacking both resistance QTLs and in lines having only the chromosome 14 QTL, suggesting an additive effect of the MIC-3 construct with this QTL. In contrast, MIC-3 overexpression did not improve resistance in lines having the single chromosome 11 QTL or in lines having both resistance QTLs, suggesting an epistatic interaction between the chromosome 11 QTL and the MIC-3 construct. Overexpression of MIC-3 did not affect the severity of RKN-induced root galling regardless of QTL genotype. These data provide new insights into the relative order of action of the chromosomes 11 and 14 QTLs and their potential roles in regulating MIC-3 expression as part of the RKN resistance response.

  16. Occurrence of Meloidogyne spp. in Argentina.

    Science.gov (United States)

    Doucet, M E; Pinochet, J

    1992-12-01

    A record of 84 plant species in 32 families that are hosts to the root-knot nematode species found in Argentina is presented. The genus Meloidogyne appears to be widely distributed in the country, with Meloidogyne incognita and M. javanica the most frequently detected species. Other species found in Argentina include M. arenaria, M. cruciani, M. decalineata, M. hapla, and M. ottersoni. The present survey is supplemented with existing published information.

  17. (ajst) response of meloidogyne hapla to mycorrhiza

    African Journals Online (AJOL)

    opiyo

    Glomus mosseae (Nicol. and Gerd.) Gerd. and Trappe, G. macrocarpum Tul and Tul and G. fasciculatum Walker and. Koske have been reported to reduce disease severity and suppress development of Meloidogyne incognita ... was done at National Agricultural Research Laboratories. (NARL). About 2kg of soil was used to ...

  18. REAÇÃO DE GENÓTIPOS DE MILHO (Zea mays L. AOS NEMATÓIDES DE GALHAS (Meloidogyne javanica e M. incognita REACTION OF CORN GENOTYPES (Zea mays L. TO ROOT-KNOT NEMATODES (Melodoigyne javanica and M. incognita

    Directory of Open Access Journals (Sweden)

    Hércules Diniz Campos

    2007-09-01

    Full Text Available

    Foram conduzidos dois experimentos, sob condições de estufa de produção, com o objetivo de avaliar a reação de oito genótipos de milho em relação aos nematóides formadores de galhas Meloidogyne javanica e M. incognita. Foram testados os híbridos DINA-657, DINA-766, DINA-170, HATÃ-1045, HATÃ-1001, FT-5140, CO-9560 E CO-32. Com relação a M. javanica, observou-se que as cultivares HATÃ-1001, HATÃ-1045, DINA-657 E FT-5140 apresentam os menores fatores de reprodução, destacando-se para uso em programas de rotação de culturas com a soja. Todas as cultivares testadas comportaram-se como boas multiplicadoras de M. incognita, apresentando fatores de reprodução superiores a 3,98. Estas cultivares não devem ser recomendadas para áreas infestadas por esta espécie de nematóide.

    PALAVRAS-CHAVE: Resistência; nematóides de galhas; milho.

  19. Native-plant hosts of Meloidogyne spp. from Western Paraná, Brazil

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    Vanessa A. Antes

    2012-04-01

    Full Text Available The present study was focused on the parasitism of Meloidogyne species on the roots of native nursery plants from the Atlantic forest. Native plants were selected from a commercial nursery in Western Paraná, searching for the natural infection of Meloidogyne. Also, the seeds of native plants were cultivated in sterile soil and inoculated with M. incognita. In both the experiments, the number of galls and number of eggs and J2 per root, allied to the reproduction factor of M. incognita on each inoculated plant were assessed. Natural infection by M. javanica was found on Cordia ecalyculata, Citharexyllum myrianthum and Aspidosperma subincanum and by M. incognita on Croton urucurana, Lonchocarpus muehlbergianus, Tabebuia impetiginosa and T. serratifolia. Meloidogyne incognita induced galls formation on Genipa americana, Schinus terebinthifolius and Rollinia mucosa after inoculation, which suggested that those plants could host this nematode in natural biomes. Nursery soil should be disinfested before seeding the native forest plants for reforestation purposes

  20. Biological control of Meloidogyne incognita by Trichoderma ...

    African Journals Online (AJOL)

    Similar tests were carried out on inoculated plants treated with such ISR elicitors to search for possible enzyme activity changes as a result of resistance induction. Nematode infection did not cause any significant changes in GLUC activity, whilst PPO activity was enhanced in inoculated with respect to uninoculated roots.

  1. Integrated management of root-knot nematode (Meloidogyne ...

    African Journals Online (AJOL)

    Integrated management of root-knot nematode (Meloidogyne incognita) for tomato production and productivity. Bayuh Belay1* ... less gall formation, number of eggs per egg mass and final nematode population over the untreated control in the pot house experiment. ...... to Control Plant Pests. University of Idaho. Moscow ...

  2. Expression of Arabidopsis genes AtNPR1 and AtTGA2 in transgenic soybean roots of composite plants confers resistance to root-knot nematode (Meloidogyne incognita)

    Science.gov (United States)

    Root-knot nematodes (RKN; Meloidogyne spp.) are among the most destructive of the plant parasitic nematodes, infecting almost all cultivated plants and resulting in yield losses of billions of dollars annually. NPR1 (nonexpresser of pathogenesis related genes 1, AtNPR1) plays a positive role in the ...

  3. Deteksi dan Identifikasi Spesies Meloidogyne pada Tanaman Wortel dari Dataran Tinggi Malino, Gowa, Sulawesi Selatan

    Directory of Open Access Journals (Sweden)

    Hishar Mirsam

    2015-02-01

    Full Text Available Meloidogyne spp. was reported as the cause of branched tuber disease on several carrot production areas in Java, Indonesia and may potentially cause yield loss. This research aimed to use morphological and molecular characters to detect and identify Meloidogyne species on carrot from Malino Highland, Sub-district of Tinggimoncong, District of Gowa, South Sulawesi. Morphological identification was done based on character of the female perineal pattern. Molecular identification was based on amplification of r-DNA by polymerase chain reaction technique using species specific primers (Fjav/Rjav for M. javanica, Far/Rar for M. arenaria, and Finc/Rinc for M. incognita and multiplex primer (JMV1/JMVhapla/JMV2 for M. hapla, M. chitwoodi, and M. fallax.Two of Meloidogyne species, i.e. M. incognita and M. arenaria were detected associated with the incidence of carrot branched tuber. The specific primers amplified two DNA bands, i.e. ± 999 bp of M. incognita and ± 420 bp of M. arenaria, while multiplex primer was failed to amplify DNA bands. Nucleotide sequence analysis showed M. incognita isolate of Malino was closely related to M. incognita isolate from Bangka-Indonesia, China (isolate JS2, and Malaysia (isolates JIK4, FIK4, JIT19, and FIT19 with homology of 99.2–100.0%. The nucleotide sequences of M. arenaria from Malino was submitted to GenBank with accession number KP234264, which was the first nucleotide sequence data in GenBank.

  4. Geschikte onderstammen voor biologisch geteelde komkommers, tomaten en paprika's in relatie tot wortelknobbelaaltjes (Meloidogyne spp.) - Resultaten onderzoek 2006-2010

    NARCIS (Netherlands)

    Janse, J.; Slooten, van M.A.; Wurff, van der A.W.G.

    2011-01-01

    During 5 years, Wageningen UR Greenhouse Horticulture did research to find a rootstock with high resistance against the most important root knot nematodes or Meloidogyne species in greenhouses in the Netherlands, M. incognita, M. hapla and M. javanica. Rootstocks should combine resistance with good

  5. Single pass cDNA sequencing - a powerful tool to analyse gene expression in preparasytic juveniles of the southern root-knot nematode Meliodogyne incognita

    NARCIS (Netherlands)

    Dautova, M.; Rosso, M.N.; Abad, P.; Gommers, F.L.; Bakker, J.; Smant, G.

    2001-01-01

    Expressed sequence tags (EST) have been widely used to assist in gene discovery in various organisms (e.g., Arabidopsis thaliana, Caenorhabditis elegans, Mus musculus, and Homo sapiens). In this paper we describe an EST project, which aims to investigate gene expression in Meloidogyne incognita at

  6. Morphological, biochemical, and molecular characterization of Meloidogyne spp. populations from Brazilian soybean production regions

    Directory of Open Access Journals (Sweden)

    Camilla Martins de Oliveira

    Full Text Available ABSTRACT: Soybean is a commodity of great economic importance worldwide, particularly in Brazil, world’s second largest producer. Nematodes, especially those of the Meloidogyne genus, severely limit productivity. Identification of nematode species is important for effective soybean management. Here, 26 populations of root-knot nematode (Meloidogyne spp. from 15 municipalities in the states of Bahia, Mato Grosso, Goias, and Minas Gerais were characterized based on the morphology of the female perineal region, esterase profile, and identification based on amplification of specific regions of the population genome. Among the Meloidogyne spp. populations obtained, M. incognita and M. javanica, were identified. No mixed populations were present in the samples. Diagnosis based on molecular analysis was shown to be reliable and the fastest for characterization of nematode populations compared to other methods analyzed.

  7. Dehydrogenases, Acid and Alkaline Phosphatases, and Esterases for Chemotaxonomy of Selected Meloidogyne, Ditylenchus, Heterodera and Aphelenchus spp.

    Science.gov (United States)

    Dickson, D W; Huisingh, D; Sasser, J N

    1971-01-01

    Various taxonomically useful profiles of four dehydrogenases (lactate, malate, glucose-6-phosphate, and a-glycerophosphate) and three hydrolases (acid and alkaline phosphatase and esterase) were detected in whole nematode homogenates of Meloidogynejavanica, M. hapla, M. incognita, M. arenaria, Ditylenchus dipsaci, D. triformis, Heterodera glycines, and Aphelenchus avenae. The enzyme profiles were stable in populations cultured on several different hosts. A tentative enzymically-determined phylogeny of Meloidogyne is given.

  8. Reprodução de Meloidogyne spp. em porta-enxertos e híbridos de pepino Reproduction of Meloidogyne spp. in rootstocks and cucumber hybrids

    Directory of Open Access Journals (Sweden)

    Silvia Renata S Wilcken

    2010-03-01

    Full Text Available A enxertia é uma técnica alternativa frequentemente recomendada para a cultura do pepino em áreas infestadas com nematóides das galhas. O presente trabalho teve como objetivo determinar o fator de reprodução de Meloidogyne javanica e de Meloidogyne incognita raça 2 em seis porta-enxertos para pepino (abóbora 'Menina Brasileira', moranga 'Exposição', 'Shelper', 'Tetsukabuto', 'B8-A Tetsukabuto' e 'Excite Ikki' e quatro híbridos de pepino (Cucumis sativus tipo japonês ('Yoshinari', 'Kouki', 'Taisho' e 'Tsuyataro'. Foram conduzidos dois experimentos em casa-de-vegetação, um com cada espécie do nematóide, sendo cada parcela constituída de uma planta mantida em vaso contendo 2 litros de solo autoclavado. Nove dias após transplante, cada planta foi inoculada com 5.000 ovos e juvenis de segundo estádio (população inicial - Pi de M. javanica ou M. incognita raça 2. Tomateiros 'Rutgers' foram utilizados como padrão de viabilidade do inóculo, em ambos os experimentos. O delineamento experimental foi inteiramente casualizado com cinco repetições por tratamento. Sessenta dias após a inoculação, cada planta foi avaliada, quanto ao peso fresco da raiz, número total de nematóides presentes no solo e na raiz (população final - Pf, número de nematóides/g de raiz e fator de reprodução de ambas as espécies de Meloidogyne (FR=Pf/Pi. Todos os porta-enxertos e híbridos de pepino testados apresentaram fatores de reprodução superiores a um, proporcionando a multiplicação de M. javanica e de M. incognita raça 2, porém, os valores nos híbridos de pepino foram superiores aos dos porta-enxertos.Grafting is an alternative technique often recommended for the cucumber crop in root-knot nematodes infested areas. This study aimed to determine the reproduction factor of Meloidogyne javanica and M. incognita race 2 on six rootstocks for cucumber (squash 'Menina Brasileira, pumpkim 'Exposição', 'Shelper', 'Tetsukabuto', 'B8-A

  9. Godel's Explorations in Terra Incognita

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 6; Issue 7. Gödel's Explorations in Terra Incognita. Vijay Chandru. General Article Volume 6 Issue 7 July 2001 pp 22-28. Fulltext. Click here to view fulltext PDF. Permanent link: http://www.ias.ac.in/article/fulltext/reso/006/07/0022-0028. Author Affiliations.

  10. Nematicidal activity of crambe extracts on Meloidogyne spp.

    Directory of Open Access Journals (Sweden)

    Sidiane Coltro-Roncato

    2016-08-01

    Full Text Available Alternative methods for the control of nematodes, such as the use of plant secondary metabolites, can be explored for integrated pest management systems. The objective of this work was to assess the best solvent for obtaining allyl isothiocyanate from Crambe abyssinica leaves, and the effects of this extract on Meloidogyne incognita and M. javanica. Dry leaves of C. abyssinica at 200 mg L-1 were used to prepare extracts by using water (by infusion and grinding, acetone, water + ethanol (hydroalcoholic extraction, methanol, hexane, and chloroform as solvents. Following the evaporation of the solvents, the residue was resuspended in water for use in the experiments. Distilled water and chemical nematicide were used as control treatments. Once the most effective extracts were defined, the following dosages of dried crambe leaves were used: 0, 200, 300, 400, and 500 mg L-1. High performance liquid chromatography (HPLC was used to quantify the allyl isothiocyanate present in the extracts. After the solvents evaporated, the residues were eluted with water and used in assays with 200 eggs for the hatching test or 200 second stage juveniles (J2 for mobility and mortality tests. The hydroalcoholic extract was the most effective in reducing the hatching of M. incognita and M. javanica juveniles, by 71.6 and 74.4 percentage points, respectively. The mortality of M. incognita and M. javanica in the hydroalcoholic extract was 93.2 and 64.4%, respectively, followed by the methanol extract (17.6 and 34% and the extract obtained by grinding (9.2 and 28%. The hydroalcoholic extract at 250 mg L-1 showed high nematicidal effect. The HPLC analysis of the extracts revealed that only the methanol and hydroalcoholic extracts had allyl isothiocyanate, indicating that the inhibitory effects on the hatching, mobility, and mortality were not solely attributed to the presence of this compound.

  11. Susceptibilidad de genotipos de Solanum spp. al nematodo causante del nudo radical Meloidogyne spp. (chitwood

    Directory of Open Access Journals (Sweden)

    Cristian Gelpud Chaves

    2011-01-01

    Full Text Available El cultivo del lulo (Solanum quitoense L. presenta una disminución en su productividad, debido al ataque de patógenos como el nematodo del nudo radical Meloidogyne spp., en el Departamento de Nariño (Colombia, se han reportado incidencias cercanas al 79%, y pérdidas del 50%. En la presente investigación, se colectaron 45 genotipos de (Solanum quitoense L. en los Departamentos de Nariño y Putumayo y 4 genotipos silvestres (S. mammosum, S. hirtum, S. marginatum y S. umbellatum buscando fuentes de resistencia al nematodo. Se inocularon 9 plantas de cada genotipo de dos meses de edad con 10000 huevos de Meloidogyne spp., dejando tres testigos por cada material. Las variables evaluadas fueron: altura de planta, severidad, incidencia, peso fresco (tallo y raíz y especies prevalentes de Meloidogyne spp. Se hizo una clasificación de genotipos mediante escala de resistencia y regresión entre la severidad y las demás variables para establecer el efecto de Meloidogyne spp. sobre los genotipos de planta. Los resultados mostraron 100% de incidencia del nematodo en todos los genotipos, 2.04% genotipos resistentes, 34.7% moderadamente resistentes, 42.8% moderadamente susceptibles, 18.3% susceptibles, y 2.04% altamente susceptibles. El genotipo SQbr05 resistente, no se vio afectado por la severidad, al contrario SQbc04 genotipo susceptible, mostró reducciones significativas en peso fresco de tallo y raíz, (R² = 0.71 y 0.98, el genotipo silvestre (S. mammosum es altamente susceptible, Meloidogyne incognita presentó 55.31% de presencia. El genotipo SQbr05 es promisorio para ser evaluado en campo.

  12. Mentha x piperita, Mentha spicata and Effects of Their Essential Oils on Meloidogyne in Soil

    Science.gov (United States)

    Walker, J. T.; Melin, J. B.

    1996-01-01

    Six peppermint (Mentha x piperita) and six spearmint (M. spicata) PI accessions were inoculated with Meloidogyne incognita race 3 and M. arenaria race 2, under greenhouse conditions. No galls formed on roots of any of the plants inoculated with 1,800 eggs/pot. Fewer than two galls per root system formed on three PI accessions of peppermint inoculated with M. incognita at 5,400 eggs/pot. Only one peppermint accession developed galls when inoculated with M. arenaria, whereas none of the spearmint accessions was susceptible to this species. Plant dry weights generally were unaffected by infection with root-knot nematodes at these densities. Growing peppermint and spearmint accessions for 8 or 12 weeks in M. arenaria-infested soil before tomato resulted in 90% reduction of root galls compared with tomato following tomato. Cineole, eugenol, geraniol, linalool, and peppermint oils at 50 and 250 mg oil/kg soil caused no reduction in the number of galls caused by M. arenaria on tomato. At 1,500 mg oil/kg soil, geraniol, eugenol, linalool, and peppermint oils (P =0.05) reduced the number of galls caused by M. arenaria, but the decrease in galling caused by M. incognita was not significant. Geraniol, linalool, and peppermint oil at 1,000 and 1,500 mg were phytotoxic to tomato. PMID:19277186

  13. Meloidogyne and Pratylenchus species in sugarcane fields in the state of Alagoas, Brazil

    Directory of Open Access Journals (Sweden)

    Marissônia de Araujo Noronha

    Full Text Available ABSTRACT: The objective of this study was to accomplish a survey on populations of Meloidogyne and Pratylenchus species in sugarcane farming areas in the state of Alagoas, Brazil. Twenty samples of soil and roots were processed to extract and quantify nematodes; however, the identification of Meloidogyne species was performed using only 12 samples. Pratylenchus spp. were reported at moderate population levels of 68-1556 specimens 50g-1 of roots and 2-298 specimens 100cm-3 of soil in twenty analyzed samples. For Meloidogyne spp., these values were of 12-487 specimens 50g-1 of roots and 0-140 specimens 100cm-3 of soil. Based on electrophoresis of esterase isozymes, M. incognita was reported to be the most frequent species, followed by M. javanica and M. arenaria. Pratylenchus species identified through morphometrical and morphological characteristics were P. zeae and P. brachyurus , with predominance for the first species. No significant correlation (P≤0.05 were reported between nematode populations and sugarcane cropping systems.

  14. Dinámica de población de Meloidogyne spp. en cultivos protegidos y pérdidas de producción de pepino, calabacín, sandía y tomate susceptible y resistente

    OpenAIRE

    Sorribas Royo, Francisco Javier; Giné Blasco, Ariadna; López Gómez, Manuel; Vela Delgado, María Dolores; Ornat Longarón, Cèsar; Talavera Rubia, Miguel Francisco; Verdejo Lucas, Soledad

    2014-01-01

    Se realizaron estudios en invernaderos infestados con Meloidogyne incognita o M. javanica, y que presentaban gradientes de infestación entre 0 y 11800 juveniles 250 cm-3 de suelo, para determinar la tasa máxima de multiplicación del nematodo (TMM), la densidad de equilibrio de la población (DE) y el efecto sobre la producción

  15. Susceptibilidad de genotipos de Solanum spp. al nematodo causante del nudo radical Meloidogyne spp. (chitwood) Susceptibility of genotypes of Solanum spp. to the nematode causative of the root knot Meloidogyne spp. (chitwood)

    Directory of Open Access Journals (Sweden)

    Cristian Gelpud Chaves

    2011-01-01

    Full Text Available El cultivo del lulo (Solanum quitoense L.) presenta una disminución en su productividad, debido al ataque de patógenos como el nematodo del nudo radical Meloidogyne spp., en el Departamento de Nariño (Colombia), se han reportado incidencias cercanas al 79%, y pérdidas del 50%. En la presente investigación, se colectaron 45 genotipos de (Solanum quitoense L.) en los Departamentos de Nariño y Putumayo y 4 genotipos silvestres (S. mammosum, S. hirtum, S. marginatum y S. umbellatum) buscando fuentes de resistencia al nematodo. Se inocularon 9 plantas de cada genotipo de dos meses de edad con 10000 huevos de Meloidogyne spp., dejando tres testigos por cada material. Las variables evaluadas fueron: altura de planta, severidad, incidencia, peso fresco (tallo y raíz) y especies prevalentes de Meloidogyne spp. Se hizo una clasificación de genotipos mediante escala de resistencia y regresión entre la severidad y las demás variables para establecer el efecto de Meloidogyne spp. sobre los genotipos de planta. Los resultados mostraron 100% de incidencia del nematodo en todos los genotipos, 2.04% genotipos resistentes, 34.7% moderadamente resistentes, 42.8% moderadamente susceptibles, 18.3% susceptibles, y 2.04% altamente susceptibles. El genotipo SQbr05 resistente, no se vio afectado por la severidad, al contrario SQbc04 genotipo susceptible, mostró reducciones significativas en peso fresco de tallo y raíz, (R² = 0.71 y 0.98), el genotipo silvestre (S. mammosum) es altamente susceptible, Meloidogyne incognita presentó 55.31% de presencia. El genotipo SQbr05 es promisorio para ser evaluado en campo.The green orange (Solanum quitoense L.) crop has decreased in its productivity due to the pathogens attack such as the root knot nematode Meloidogyne spp. In the Nariño Department of Colombia, pest incidences near to 79% and losses of 50% have been reported. In this study, 45 genotypes of Solanum quitoense were collected in Nariño and Putumayo

  16. Pathogenicity of four species of meloidogyne on three varieties of olive trees.

    Science.gov (United States)

    Lamberti, F; Baines, R C

    1969-04-01

    'Ascolano' and 'Sevillano' olive trees, Olea europaea L., were highly susceptible to Meloidogyne javanica (Trueb) Chitwood, and growth of their tops was decreased greatly in tests in a glasshouse. Roots of 'Manzanillo' olive trees were galled moderately by M. javanica, and their tops weighed 6% less than those of noninoculated trees. 'Manzanillo' olive is considered highly tolerant to M. javanica. 'Ascolano' and 'Manzanillo' olive trees were highly susceptible to M. incognita (Kofoid &White) Chitwood. Their roots were galled moderately to severely, and growth of their tops were decreased between 13% and 44%. 'Ascolano' and 'Manzanillo' olive trees were considered to be highly resistant to M. arenaria (Neal) Chitwood and M. hapla Chitwood since no galls or mature females were found on their roots three and one-half months after inoculation.

  17. HCSD: the human cancer secretome database

    DEFF Research Database (Denmark)

    Feizi, Amir; Banaei-Esfahani, Amir; Nielsen, Jens

    2015-01-01

    The human cancer secretome database (HCSD) is a comprehensive database for human cancer secretome data. The cancer secretome describes proteins secreted by cancer cells and structuring information about the cancer secretome will enable further analysis of how this is related with tumor biology...... database is limiting the ability to query the increasing community knowledge. We therefore developed the Human Cancer Secretome Database (HCSD) to fulfil this gap. HCSD contains >80 000 measurements for about 7000 nonredundant human proteins collected from up to 35 high-throughput studies on 17 cancer...... types. It has a simple and user friendly query system for basic and advanced search based on gene name, cancer type and data type as the three main query options. The results are visualized in an explicit and interactive manner. An example of a result page includes annotations, cross references, cancer...

  18. Crop Rotation Studies with Velvetbean (Mucuna deeringiana) for the Management of Meloidogyne spp.

    Science.gov (United States)

    Rodríguez-Kábana, R; Pinochet, J; Robertson, D G; Wells, L

    1992-12-01

    Results from a greenhouse experiment at Cabrils, Spain, with two velvetbean (Mucuna deeringiana) accessions (Florida and Mozambique) growing in sterilized sandy loam and inoculated with Meloidogyne arenaria race 2, M. incognita race 1, and M. javanica revealed that the legume was not a host for these nematodes. In contrast, roots of 'Clemson Spineless' okra (Hibiscus esculentum), 'Summer Crookneck' squash (Cucurbita pepo), and 'Davis' soybean (Glycine max) were galled by all three root-knot nematodes. Greenhouse experiments at Auburn, Alabama, using soils infested with Heterodera glycines (race 14) + M. incognita or with H. glycines + M. arenaria (race 2) showed that, in contrast to Davis soybean, a Mexican and the Florida velvetbean accessions were not hosts for the nematodes. An experiment with 'Florunner' peanut (Arachis hypogaea) and the Florida velvetbean in a field infested with M. arenaria (race 1), near Headland, Alabama, showed that significant juvenile populations of the nematode at peanut harvest time were present only in plots with peanut. A microplot rotation experiment demonstrated that 'Black Beauty' eggplant (Solanum melongena) following the Florida velvetbean had heavier shoots and lower numbers of M. arenaria juveniles in the roots and in the soil than eggplant after Summer Crookneck squash or Davis soybean.

  19. Identification of Meloidogyne species associated with upland ornamentals plants in Costa Rica.

    Directory of Open Access Journals (Sweden)

    Stefany Solano-González

    2015-06-01

    Full Text Available The objective of this study was to identify nematodes species of the genus Meloidogyne associated with upland ornamental plants. We sampled ten ornamental species in a commercial nursery in San Isidro, Heredia, Costa Rica between 2011-2012. Morphometric measurements of the stylet length, the tail length, and the hyaline region of J2s, as well as perineal patterns of egg-carrying females were used for identification, Genomic DNA was extracted from single J2s and molecular analyses were performed by amplifying the intergenic region between cytochrome oxidase subunit II of the COII and the long subunit of the ARN ribosomal genes by PCR-RFLP. Combining these methods allowed identification of five species of nematodes of the genus Meloidogyne (M. arenaria, M. hapla, M. hispanica, M. incognita and M. javanica, and new restriction enzyme patterns were reported for M. hapla and M. javanica using AluI. Additionally, a preliminary report of M. hispanica was described by sequencing the 28S and 18S regions.

  20. Identification of Meloidogyne species associated with uptall ornamentals plants in Costa Rica

    International Nuclear Information System (INIS)

    Solano-Gonzalez, Stefany; Esquivel-Hernandez, Alejandro; Molina-Bravo, Ramon; Morera-Brenes, Bernal

    2015-01-01

    Nematodes species of the genus Meloidogyne associated with upland ornamental plants were identified. Ten ornamental species in a commercial nursery were sampled in San Isidro, Heredia, Costa Rica between 2011-2012. Morphometric measurements of the stylet length, the trail length, and the hyaline region of J 2 s as well as perineal patterns of egg-carrying females were used for identification, Genomic DNA was extracted from single J 2 s and molecular analyses were performed by amplifying the intergenic region between cytochrome oxidase subunit II of the COII and the long subunit of the ARN ribosomal genes by PCR-RFLP. Combining these methods allowed identification of five species of nematodes of the genus Meloidogyne (M. arenaria, M. hapla, M. hispanica, M. incognita and M. javanica), and new restriction enzyme patterns were reported for M. hapla and M. javanica using AluI. Additionally a preliminary report of M. hispanica was described by sequencing the 28S and 18S regions. (author) [es

  1. Susceptibilidad de genotipos de Solanum spp. al nematodo causante del nudo radical Meloidogyne spp. (chitwood

    Directory of Open Access Journals (Sweden)

    Gelpud Chaves Cristian

    2011-03-01

    Full Text Available

    El cultivo del lulo (Solanum quitoense L. presenta una disminución en su productividad, debido al ataque de patógenos como el nematodo del nudo radical Meloidogyne  spp., en el Departamento  de Nariño (Colombia, se han reportado incidencias cercanas al 79%, y pérdidas del 50%.   En la presente investigación, se colectaron 45 genotipos de (Solanum quitoense  L. en los Departamentos  de Nariño  y Putumayo  y 4 genotipos  silvestres  (S. mammosum, S. hirtum,       S. marginatum  y S. umbellatum buscando fuentes de resistencia al nematodo. Se inocularon 9 plantas de cada genotipo de dos meses de edad con 10000 huevos de Meloidogyne spp., dejando tres testigos por cada material. Las variables evaluadas fueron: altura de planta, severidad, incidencia, peso fresco (tallo y raíz y especies prevalentes de Meloidogyne spp. Se hizo una clasificación de genotipos mediante escala de resistencia y regresión entre la severidad y las demás variables para establecer el efecto de Meloidogyne spp. sobre los genotipos de planta. Los resultados mostraron 100% de incidencia del nematodo en  todos  los  genotipos,  2.04%  genotipos  resistentes,  34.7%  moderadamente  resistentes, 42.8% moderadamente susceptibles, 18.3% susceptibles, y 2.04% altamente susceptibles. El genotipo SQbr05 resistente, no se vio afectado por la severidad, al contrario SQbc04 genotipo susceptible, mostró reducciones significativas en peso fresco de tallo y raIz, (R2 = 0.71 y 0.98,el genotipo silvestre (S. mammosum es altamente susceptible, Meloidogyne incognita presentó 55.31% de presencia. El genotipo SQbr05 es promisorio para ser evaluado en campo.

  2. Resistência de porta-enxertos para pessegueiro e ameixeira aos nematóides causadores de galhas (Meloidogyne spp. Resistance of rootstock for peach tree and plum to root-knot nematodes (Meloidogyne spp.

    Directory of Open Access Journals (Sweden)

    José Carlos Fachinello

    2000-03-01

    Full Text Available O trabalho foi realizado com o objetivo de comparar o comportamento de cinco diferentes porta-enxertos para frutas de caroço em frente a duas espécies de nematóides do gênero Meloidogyne (Meloidogyne javanica e Meloidogyne incognita. O cultivar GF 677 foi obtido a partir do cultivo in vitro e os demais porta-enxertos a partir de sementes. Aos dois meses, as plântulas foram repicadas e inoculadas com uma mistura de Meloidogyne javanica e M. incognita aos 30, 60 e 70 dias após o plantio em canteiros incorporando-se 0,2kg de solo altamente infestado com os nematóides ao redor de cada planta. Ao final do experimento, avaliaram-se o desenvolvimento das plantas e o grau de infecção de cada cultivar. O grau de resistência dos cultivares foi estimado a partir do índice de galhas, obtido através de uma escala de grau ou nota, a qual varia de 0 a 5, em função do número de galhas ou ootecas. Os resultados obtidos demonstraram que o cultivar Okinawa não apresentou galhas no sistema radicular e na análise de crescimento foi superior aos demais cultivares. Os cultivares R-15-2 e Aldrighi foram considerados resistentes aos fitonematóides por apresentarem pequeno número de galhas no sistema radicular. Já o cultivar GF 677 apresentou maior número de galhas no sistema radicular, chegando a 126 galhas/g de raiz.The work was carried out with the objective of comparing the response of five different stone fruit rootstocks to two nematode species (Meloidogyne javanica and Meloidogyne incognita. The cultivar GF677, which was obtained from in vitro cultivation and the others rootstocks, were obtained from seedlings. Two month old plants were transplanted and inoculated with a mixture of both nematode species at 30, 60, 70 days after planting, by incorporating 0.2kg of highly infested soil around each cultivar. The development of the roststocks were evaluated at the end of the experiment. Number of galls, ranging from 0 to 5 was used to score the

  3. Effects of Anaerobically Digested Slurry on Meloidogyne incognita and Pratylenchus penetrans in Tomato and Radish Production

    Directory of Open Access Journals (Sweden)

    Yu Yu Min

    2011-01-01

    Full Text Available Since effective disposable way of anaerobically digested biogas slurry is expected, ADS was applied to soil to evaluate its effects on nematode damage. Damage index of tomato by root-knot nematode was significantly (<.05 lower and the growth better in pots applied with ADS (100 and 200 mg NH+4-N kg−1 than that in those with chemical fertilizer and control (no ADS. ADS was applied into radish cultivated fields infested with the root-lesion nematode: a single (100 kg NH+4-N ha−1 in 2007 and 2008 and multiple applications (25, 50, 25 kg NH+4-N ha−1 soil in 2009. Damage to radish was 30% and 50% lower in ADS-treated fields than that in the control in 2007 and 2009, respectively, although not in 2008. These results suggest that application of ADS to fields might be feasible for mitigating nematode damage, but the rate and timing should be considered further for the best application way.

  4. Identification of widely varying levels of resistance to meloidogyne incognita in sweet sorghum

    Science.gov (United States)

    Sweet sorghum (Sorghum bicolor) is a potential bioenergy crop that could be incorporated into annual cropping systems in the southern US, where it would likely be rotated with cotton. The desirability of including sweet sorghum in a cotton cropping system will be influenced by sweet sorghum’s host ...

  5. Suppression of Meloidogyne incognita by extracts and powdered fruits of Gleditsia sinensis (Chinese honeylocust)

    Science.gov (United States)

    Although the Chinese honeylocust (Gleditsia sinensis) is receiving extensive pharmacological investigation because of its use in traditional Chinese medicine, little work has been undertaken to investigate use of G. sinensis products as soil amendments or as sources of nematode-antagonistic phytoche...

  6. Effects of Anaerobically Digested Slurry on Meloidogyne incognita and Pratylenchus penetrans in Tomato and Radish Production

    International Nuclear Information System (INIS)

    Min, Y.Y; Toyota, K; Sato, E; Takada, A

    2011-01-01

    Since effective disposable way of anaerobically digested biogas slurry is expected, ADS was applied to soil to evaluate its effects on nematode damage. Damage index of tomato by root-knot nematode was significantly (P 4 + -N kg -1 ) than that in those with chemical fertilizer and control (no ADS). ADS was applied into radish cultivated fields infested with the root-lesion nematode: a single (100 kg NH 4 + -N ha -1 ) in 2007 and 2008 and multiple applications (25, 50, 25 kg NH 4 + -N ha -1 soil) in 2009. Damage to radish was 30% and 50% lower in ADS-treated fields than that in the control in 2007 and 2009, respectively, although not in 2008. These results suggest that application of ADS to fields might be feasible for mitigating nematode damage, but the rate and timing should be considered further for the best application way.

  7. Volatile organic molecules from Fusarium oxysporum strain 21 with nematicidal activity against Meloidogyne incognita

    NARCIS (Netherlands)

    Terra, Willian César; Campos, Vicente Paulo; Martins, Samuel Julio; Costa, Lilian Simara Abreu S.; Silva, da Júlio Carlos Pereira; Barros, Aline Ferreira; Lopez, Liliana Estupiñan; Santos, Thaisa Conrado Nunes; Smant, Geert; Oliveira, Denilson Ferreira

    2018-01-01

    Volatile organic compounds (VOCs) produced by microorganisms are potential alternatives for the development of new nematicides. In a previous study, we identified VOCs produced by Fusarium oxysporum strain 21 (F.o–21). In this study, we tested the eight most abundant VOCs produced by F.o-21 against

  8. Effect of Meloidogyne incognita parasitism on yield and sugar content of sugar beet in Georgia

    Science.gov (United States)

    Sugar beet (Beta vulgaris) is typically grown as a summer crop for edible sugar production in the north-central and western US, but it could be incorporated as a winter crop into annual cropping systems in the southern US where the sugar would be used for biofuel and plastic production. Sugar beet ...

  9. Resistance of maize to Meloidogyne arenaria and Meloidogyne javanica.

    Science.gov (United States)

    Williams, W P; Windham, G L

    1990-12-01

    A diallel cross of eight maize, Zea mays L., inbred lines was analyzed for reaction to two species of root-knot nematodes, Meloidogyne arenaria (Neal) Chitwood and M. javanica (Treub) Chitwood. Egg production following inoculation of F1 hybrid seedlings with nematode eggs was determined in a greenhouse experiment. Data were analyzed using Griffing's Method 4, Model I. General combining ability was a significant source of variation in egg production of both M. arenaria and M. javanica; specific combining ability was not a significant source of variation for either. The correlation between egg production of the two nematode species on the 28 F1 hybrids was highly significant. Hybrids with Mp313 or SC213 as one parent were the most resistant to both species. This indicates that germ plasm is available for developing inbred lines and hybrids with resistance to both M. arenaria race 2 and M. javanica.

  10. Effects of Root Decay on the Relationship between Meloidogyne spp. Gall Index and Egg Mass Number in Cucumber and Horned Cucumber

    Science.gov (United States)

    Walters, S. Alan; Wehner, Todd C.; Barker, Kenneth R.

    1992-01-01

    A greenhouse study was conducted to determine if root necrosis had an effect on the relationship between root-knot nematode gall index and egg mass number. Thirty-four cultigens of Cucumis (14 accessions, 12 cultivars, and six breeding lines of C. sativus, and two accessions of C. metuliferus) were evaluated against four root-knot species (Meloidogyne arenaria race 2, M. incognita race 1, M. incognita race 3, and M. javanica) measuring gall index, root necrosis, and egg mass number. Root necrosis affected the gall index-egg mass relationship. At lower root necrosis values, a stronger relationship existed between gall index and egg mass number than at higher root necrosis values. Root tissue was destroyed by root necrosis, and normal root-knot nematode reproduction would not occur, even though root galling was still observed. The races of M. incognita tested had a greater effect in predisposing C. sativus and C. metuliferus to root necrosis than did M. arenaria race 2 or M. javanica. This study showed that root necrosis had an adverse affect on the relationship between gall index and egg mass number in cucumber. PMID:19283049

  11. Reação de porta-enxertos comerciais de tomateiro a Meloidogyne mayaguensis Reaction of commercial tomato rootstocks plant to Meloidogyne mayaguensis

    Directory of Open Access Journals (Sweden)

    Rafael Ricardo Cantu

    2009-09-01

    Full Text Available O objetivo do presente trabalho foi verificar a resistência ao nematóide Meloidogyne mayaguensis em oito porta-enxertos de tomateiro considerados resistentes à Meloidogyne incognita, M. javanica e M. arenaria, comercializados no Brasil. Os porta-enxertos testados foram: 'Guardião', 'Helper-M', 'Anchor-T', 'Dr. K', 'Kagemuscha', 'TMA 809', 'Magnet' e 'He-Man'. O experimento constou de 9 tratamentos (8 porta-enxertos e a cultivar Rutgers utilizada como padrão de suscetibilidade, com 6 repetições, sendo cada parcela constituída por 1 planta por vaso, mantidas em casa de vegetação. As plantas foram inoculadas com 5.000 ovos e eventuais juvenis infectantes de M. mayaguensis. O experimento seguiu o delineamento inteiramente casualizado. Aos 60 dias da inoculação procederam-se as avaliações, quando foram avaliados os índices de galhas e massas de ovos, número de nematóides no solo e na raiz, peso do sistema radicular e o fator de reprodução. Todos os porta-enxertos estudados demonstraram-se suscetíveis a M. mayaguensis.The objective of this research was to verify the resistance response of eight Brazilian commercial tomato rootstocks to the nematode Meloidogyne mayaguensis. The studied rootstocks were: 'Guardião', 'Helper-M', 'Anchor-T', 'Dr. K', 'Kagemuscha', 'TMA 809', 'Magnet' and 'He-Man'. The experiment consisted of 9 treatments (8 rootstocks and 'Rutgers' used as susceptible control, with 6 replication. Each plot was constituted by 1 plant per pot, maintained in green-house. The plants were inoculated with 5,000 eggs and second stage juvenile of M. mayaguensis. The experimental design was completely randomized. The evaluation was 60 days after inoculation, when the root weight, gall and egg mass index, nematode number in soil and in root and reproduction factor were evaluated. All studied rootstocks were susceptible to M. mayaguensis.

  12. Nematode pests threatening soybean production in South Africa, with reference to Meloidogyne

    Directory of Open Access Journals (Sweden)

    Hendrika Fourie

    2015-09-01

    Full Text Available The area planted to soybean in South Africa has increased by 54% since the 2009 growing season, mainly as a result of the increasing demand for protein-rich food and fodder sources. Moreover, the introduction of advanced technology, namely the availability of genetically modified herbicide tolerant soybean cultivars also contributed towards increased soybean production. The omnipresence of plant-parasitic nematodes in local agricultural soils, however, poses a threat to the sustainable expansion and production of soybean and other rotation crops. Meloidogyne incognita and M. javanica are the predominant nematode pests in local soybean production areas and those where other grain-, legume- and/or vegetable crops are grown. The lack of registered nematicides for soybean locally, crop production systems that are conducive to nematode pest build-ups as well as the limited availability of genetic host plant resistance to root-knot nematode pests, complicate their management. Research aimed at various aspects related to soybean-nematode research, namely, audits of nematode assemblages associated with the crop, identification of genetic host plant resistance in soybean germplasm to M. incognita and M. javanica, the use of molecular markers that are linked to such genetic resistance traits as well as agronomic performance of pre-released cultivars that can be valuable to producers and the industry are accentuated in this review. Evaluation of synthetically-derived as well as biological-control agents are also discussed as complementary management tactics. It is important that lessons learned through extensive research on soybean-nematode interactions in South Africa be shared with researchers and industries in other countries as they might experience or expect similar problems and/or challenges.

  13. Efecto del follaje de Tagetes minutasobre la nodulación radicular de Meloidogyne incognitaen Capsicum annuum, en invernadero Effect of the foliage of Tagetes minutaon Meloidogyne incognitaroot-galling on Capsicum annuumin a greenhouse

    Directory of Open Access Journals (Sweden)

    Santos Nélida Murga-Gutiérrez

    2013-06-01

    Full Text Available Se investigó el efecto del follaje del “huacatay” Tagetes minutasobre la nodulación radicular producida por el nematodo Meloidogyne incognitaque parasita el “pimiento páprika” Capsicum annuumcultivado en invernadero, con la finalidad de obtener una alternativa de control de este nematodo. Se utilizaron tres grupos experimentales y un testigo, con 12 macetas cada uno, las cuales contenían suelo y arena estériles (1:1. A este substrato se adicionó el follaje de T. minutaal 20, 35 y 50% (v/v según grupo experimental, y el testigo no recibió esta enmienda. En cada maceta se sembró una plántula de C. annuum, y a la semana postsiembra se inoculó 5000 huevos de M. incognita.A las ocho semanas, se evaluaron los nódulos en sus raíces. Todas las plantas presentaron nódulos; aunque, en aquellas de los grupos experimentales el número de éstos fue menor que en las plantas testigo, con diferencia estadística significativa (p 0,05. Se concluye que el follaje de T. minutaadicionado como enmienda orgánica al 20, 35 y 50% al suelo de cultivo de plantas de C. annuum limita la nodulación radicular ocasionada por M. incognita. Lo cual sugiere su uso potencial en el control de este nematodo.The effect of the foliage of Tagetes minuta"huacatay" on Meloidogyne incognitaroot-galling on Capsicum annuum"paprika pepper" cultured in a greenhouse was researched, to obtain a control strategy for this nema-tode. Three experimental groups and one control with 12 pots each were used, which contained sterilized soil and sand (1:1. To this substrate was added cut foliage of T. minutaat 20, 35 and 50% (v/v according to the experimental group, and the control group remained without this amendment. In each pot a seedling of C. annuum was sown, and one week post-seeding was inoculated with 5000 eggs of M. incognita. Eight weeks later the root galling was evaluated. All the plants had root galling; although the number of galls in plants of the experimental

  14. Cytology of parthenogenesis of five Meloidogyne species

    NARCIS (Netherlands)

    Van der Beek, JG; Loss, JA; Pijnacker, LP

    1998-01-01

    Oogenesis was investigated using a fluorescent staining technique with Hoechst 33258 in several isolates of facultative meiotic parthenogenetic -Meloidogyne hapla race A, M. chitwoodi, M. fallax - and obligate ameiotic (mitotic) parthenogenetic - M. hapla race B, M. javanica - and isolate Xa of an

  15. Harnessing the Helminth Secretome for Therapeutic Immunomodulators

    Science.gov (United States)

    Anandarajah, Emmanuela M.; Meissner, Kamila A.; Brattig, Norbert; Liebau, Eva

    2014-01-01

    Helminths are the largest and most complex pathogens to invade and live within the human body. Since they are not able to outpace the immune system by rapid antigen variation or faster cell division or retreat into protective niches not accessible to immune effector mechanisms, their long-term survival depends on influencing and regulating the immune responses away from the mode of action most damaging to them. Immunologists have focused on the excretory and secretory products that are released by the helminths, since they can change the host environment by modulating the immune system. Here we give a brief overview of the helminth-associated immune response and the currently available helminth secretome data. We introduce some major secretome-derived immunomodulatory molecules and describe their potential mode of action. Finally, the applicability of helminth-derived therapeutic proteins in the treatment of allergic and autoimmune inflammatory disease is discussed. PMID:25133189

  16. Harnessing the Helminth Secretome for Therapeutic Immunomodulators

    Directory of Open Access Journals (Sweden)

    Dana Ditgen

    2014-01-01

    Full Text Available Helminths are the largest and most complex pathogens to invade and live within the human body. Since they are not able to outpace the immune system by rapid antigen variation or faster cell division or retreat into protective niches not accessible to immune effector mechanisms, their long-term survival depends on influencing and regulating the immune responses away from the mode of action most damaging to them. Immunologists have focused on the excretory and secretory products that are released by the helminths, since they can change the host environment by modulating the immune system. Here we give a brief overview of the helminth-associated immune response and the currently available helminth secretome data. We introduce some major secretome-derived immunomodulatory molecules and describe their potential mode of action. Finally, the applicability of helminth-derived therapeutic proteins in the treatment of allergic and autoimmune inflammatory disease is discussed.

  17. Secretome Signature of Invasive Glioblastoma Multiforme

    OpenAIRE

    Formolo, Catherine A.; Williams, Russell; Gordish-Dressman, Heather; MacDonald, Tobey J.; Lee, Norman H.; Hathout, Yetrib

    2011-01-01

    The incurability of malignant glioblastomas is mainly attributed to their highly invasive nature coupled with resistance to chemo- and radiation therapy. Because invasiveness is partially dictated by the proteins these tumors secrete we used SILAC to characterize the secretomes of four glioblastoma cell lines (LN18, T98, U118 and U87). Although U87 and U118 cells both secreted high levels of well-known invasion promoting proteins, a Matrigel invasion assay showed U87 cells to be eight times m...

  18. Secretome signature of invasive glioblastoma multiforme.

    Science.gov (United States)

    Formolo, Catherine A; Williams, Russell; Gordish-Dressman, Heather; MacDonald, Tobey J; Lee, Norman H; Hathout, Yetrib

    2011-07-01

    The incurability of malignant glioblastomas is mainly attributed to their highly invasive nature coupled with resistance to chemo- and radiation therapy. Because invasiveness is partially dictated by the proteins these tumors secrete we used SILAC to characterize the secretomes of four glioblastoma cell lines (LN18, T98, U118 and U87). Although U87 and U118 cells both secreted high levels of well-known invasion promoting proteins, a Matrigel invasion assay showed U87 cells to be eight times more invasive than U118 cells, suggesting that additional proteins secreted by U87 cells may contribute to the highly invasive phenotype. Indeed, we identified a number of proteins highly or exclusively expressed by U87 cells as compared to the less invasive cell lines. The most striking of these include ADAM9, ADAM10, cathepsin B, cathepsin L1, osteopontin, neuropilin-1, semaphorin-7A, suprabasin, and chitinase-3-like protein 1. U87 cells also expressed significantly low levels of some cell adhesion proteins such as periostin and EMILIN-1. Correlation of secretome profiles with relative levels of invasiveness using Pavlidis template matching further indicated potential roles for these proteins in U87 glioblastoma invasion. Antibody inhibition of CH3L1 reduced U87 cell invasiveness by 30%.

  19. Plasmodium falciparum secretome in erythrocyte and beyond

    Directory of Open Access Journals (Sweden)

    Rani eSoni

    2016-02-01

    Full Text Available Plasmodium falciparum is the causative agent of deadly malaria disease. It is an intracellular eukaryote and completes its multi-stage life cycle spanning the two hosts viz, mosquito and human. In order to habituate within host environment, parasite conform several strategies to evade host immune responses such as surface antigen polymorphism or modulation of host immune system and it is mediated by secretion of proteins from parasite to the host erythrocyte and beyond, collectively known as, malaria secretome. In this review, we will discuss about the deployment of parasitic secretory protein in mechanism implicated for immune evasion, protein trafficking, providing virulence, changing permeability and cyto-adherence of infected erythrocyte. We will be covering the possibilities of developing malaria secretome as a drug/vaccine target. This gathered information will be worthwhile in depicting a well-organized picture for host-pathogen interplay during the malaria infection and may also provide some clues for development of novel anti-malarial therapies.

  20. Ação de extratos de plantas medicinais sobre juvenis de Meloidogyne incognita raça 2

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    Maria da Conceição Beserra Martins

    Full Text Available RESUMO Os fitonematoides são parasitas que afetam seriamente as culturas em todo o mundo comprometendo a produção agrícola e, por vezes, inviabilizando a utilização de numerosas áreas de cultivo. A busca por medidas alternativas de controle em substituição aos nematicidas convencionais é uma preocupação mundial, justificando pesquisas com substâncias naturais por serem eficientes e ecologicamente corretos. Objetivou-se neste trabalho avaliar o efeito de extratos vegetais de agrião-do-brejo (Eclipta alba L., alfavaca (Ocimum basilicum, artemísia (Artemísia vulgaris, capim citronela (Cymbopogon winteranus, chambá (Justicia pectoralis, confrei (Symphytum officinalle, hortelã (Mentha x vilosa, lombrigueira (Spigelia anthelmia, mastruz (Chenopodium ambrosioides e menta (Mentha arvensis na motilidade e mortalidade de juvenis de Meloidogyneincognita raça 2. Os extratos, obtidos a partir de folhas secas sob infusão ou sob maceração em água, foram diluídos e distribuídos em placas de Petri às quais foram adicionados 50 juvenis de segundo estádio (J2. Após permanecerem por 48 horas nos extratos, todos os J2 móveis ou imóveis foram contados e, em seguida, transferidos para água determinando-se, após 24 horas, a porcentagem de J2 mortos. Os J2 ainda ativos foram inoculados em mudas de tomateiro ‘Santa Clara’ em casa de vegetação para avaliar a sua infectividade. Os extratos macerados das plantas medicinais, excetuando-se capim citronela, hortelã e menta, apresentaram alta atividade nematicida com mais de 70% de J2 mortos. Mortalidade total ocorreu em extratos de lombrigueira, agrião-do-brejo e mastruz. A ausência de galhas nas raízes de tomateiros inoculados confirmou o efeito tóxico desses extratos.

  1. Behaviour of Heterodera glycines and Meloidogyne incognita infective juveniles exposed to nematode FMRFamide-like peptides in vitro

    Science.gov (United States)

    Plant-parasitic nematodes depend upon a family of neuropeptides, the FMRFamide-like peptides (FLPs), to regulate locomotion and behavior. To exploit FLPs as leads to novel nematode control agents, an understanding of how specific FLPs affect behavior, and what differences exist between species, is i...

  2. Assessment of DAPG-producing Pseudomonas fluorescens for management of Meloidogyne incognita and Fusarium oxysporum on watermelon

    Science.gov (United States)

    Pseudomonas fluorescens isolates Clinto 1R, Wayne 1R and Wood 1R, which produce the antibiotic 2,4-diacetylphloroglucinol (DAPG), can suppress soilborne diseases and promote plant growth. Consequently, these beneficial bacterial isolates were tested on watermelon plants for suppression of Meloidogy...

  3. Enzyme phenotypes of Meloidogyne spp. populations

    OpenAIRE

    Carneiro, R.M.D.G.; Almeida, M.R.A.; Quénéhervé, Patrick

    2000-01-01

    Les phénotypes enzymatiques de l'estérase (EST), la malate déshydrogènase (MDH), la superoxide dismutase (SOD) et la glutamate-oxaloacétate transaminase (GOT) ont été utilisés de manière systématique afin de caractériser plusieurs espèces de #Meloidogyne$ provenant principalement du Brésil et de quelques pays des régions américaines. C'est l'activité estérastique qui a présenté le plus grand polymorphisme et s'est montrée la plus utile dans la caractérisation des espèces. A l'aide de cette en...

  4. Comparative secretome analysis of rat stomach under different nutritional status

    Directory of Open Access Journals (Sweden)

    Lucia L. Senin

    2015-06-01

    Full Text Available The fact that gastric surgery is at the moment the most effective treatment to fight against obesity highlights the relevance of gastric derived proteins as potential targets to treat this pathology. Taking advantage of a previously established gastric explant model for endocrine studies, the proteomic analysis of gastric secretome was performed. To validate this gastric explant system for proteomic analysis, the identification of ghrelin, a classical gastric derived peptide, was performed by MS. In addition, the differential analysis of gastric secretomes under differential nutritional status (control feeding vs fasting vs re-feeding was performed. The MS identified proteins are showed in the present manuscript. The data supplied in this article is related to the research article entitled “Comparative secretome analysis of rat stomach under different nutritional status” [1].

  5. Lytic Polysaccharide Monooxygenases - Studies of Fungal Secretomes and Enzyme Properties

    DEFF Research Database (Denmark)

    Nekiunaite, Laura

    degradation, were also identified upstream the LPMO genes, providing evidence for a co-regulatory mechanism of LPMOs and amylolytic hydrolases. The second part of the PhD thesis is focused on understanding the binding properties of LPMOs to starch and starch mimic substrate. It was shown that LPMOs possessing...... to different substrates at the protein level. It could help to design better enzyme cocktails that increase efficiency of biomass degradation. The secretomes of A. nidulans revealed differences in growth and secretion of enzymes, depending on the type and properties of starches. A common characteristic...... conversion as they produce a wide diversity of degrading enzymes. In the first part of this PhD thesis, the secretomes of the well-known fungus Aspergillus nidulans grown on cereal and legume starches were analyzed. Secretomics is a powerful tool to unravel secretion patterns of fungi and their response...

  6. Proteomic Studies of Cholangiocarcinoma and Hepatocellular Carcinoma Cell Secretomes

    OpenAIRE

    Srisomsap, Chantragan; Sawangareetrakul, Phannee; Subhasitanont, Pantipa; Chokchaichamnankit, Daranee; Chiablaem, Khajeelak; Bhudhisawasdi, Vaharabhongsa; Wongkham, Sopit; Svasti, Jisnuson

    2009-01-01

    Cholangiocarcinoma (CCA) and hepatocellular carcinoma (HCC) occur with relatively high incidence in Thailand. The secretome, proteins secreted from cancer cells, are potentially useful as biomarkers of the diseases. Proteomic analysis was performed on the secreted proteins of cholangiocarcinoma (HuCCA-1) and hepatocellular carcinoma (HCC-S102, HepG2, SK-Hep-1, and Alexander) cell lines. The secretomes of the five cancer cell lines were analyzed by SDS-PAGE combined with LC/MS/MS. Sixty-eight...

  7. The map-1 gene family in root-knot nematodes, Meloidogyne spp.: a set of taxonomically restricted genes specific to clonal species.

    Directory of Open Access Journals (Sweden)

    Iva Tomalova

    Full Text Available Taxonomically restricted genes (TRGs, i.e., genes that are restricted to a limited subset of phylogenetically related organisms, may be important in adaptation. In parasitic organisms, TRG-encoded proteins are possible determinants of the specificity of host-parasite interactions. In the root-knot nematode (RKN Meloidogyne incognita, the map-1 gene family encodes expansin-like proteins that are secreted into plant tissues during parasitism, thought to act as effectors to promote successful root infection. MAP-1 proteins exhibit a modular architecture, with variable number and arrangement of 58 and 13-aa domains in their central part. Here, we address the evolutionary origins of this gene family using a combination of bioinformatics and molecular biology approaches. Map-1 genes were solely identified in one single member of the phylum Nematoda, i.e., the genus Meloidogyne, and not detected in any other nematode, thus indicating that the map-1 gene family is indeed a TRG family. A phylogenetic analysis of the distribution of map-1 genes in RKNs further showed that these genes are specifically present in species that reproduce by mitotic parthenogenesis, with the exception of M. floridensis, and could not be detected in RKNs reproducing by either meiotic parthenogenesis or amphimixis. These results highlight the divergence between mitotic and meiotic RKN species as a critical transition in the evolutionary history of these parasites. Analysis of the sequence conservation and organization of repeated domains in map-1 genes suggests that gene duplication(s together with domain loss/duplication have contributed to the evolution of the map-1 family, and that some strong selection mechanism may be acting upon these genes to maintain their functional role(s in the specificity of the plant-RKN interactions.

  8. Reação de linhagens de feijão-vagem ao Meloidogyne javanica e M. paranaensis em casa-de-vegetação = Reaction of snap bean to Meloidogyne javanica and M. paranaensis in greenhouse.

    Directory of Open Access Journals (Sweden)

    Fernando César Baida

    2011-04-01

    Full Text Available Nematoides formadores de galhas (Meloidogyne sp. são responsáveis pela baixa produtividade na cultura do feijoeiro, cujas perdas, provocadas por esses patógenos, podem chegar até 90%. O presente estudo teve como objetivo avaliar o comportamento de seis linhagens de feijoeiro (‘Hav 06’, ‘Hav 11’, ‘Hav 28’, ‘Hav 50’, ‘Hav 69’ e ‘Torino’ frente ao parasitismo de M. javanica e de M. paranaensis. As linhagens foram inoculadas com 5.000 ovos e eventuais juvenis dos respectivos nematoides. O delineamento experimental foi inteiramente casualizado, com dez repetições para cada tratamento com os nematoides e dez repetições para testemunha sem inoculação. Quarenta e cinco dias após inoculação, os sistemas radiculares foram coletados, lavados e avaliados quanto à produção de ovos e estimativa do Fator de Reprodução (FR. Os resultados mostraram baixa reprodução dos nematoides nas linhagens de feijão-vagem avaliadas, e que, para M. javanica, o FR variou de 0,02 a 0,05, enquanto que, para M. paranaensis, a variação foi de 0,04 a 0,36, indicando que todas as linhagens se comportaram como resistentes, apresentando FR Root-knot nematodes (Meloidogyne sp. are responsable for low productivity on bean culture, where the losses caused by this pathogen can reach 90%. The present study aimed to evaluate the behavior of six bean lineages (‘Hav 06’, ‘Hav 11’, ‘Hav 28’, ‘Hav 50’,‘Hav 69’ and ‘Torino’ against the parasitism of M. javanica and M. paranaensis. The lineages were inoculated with 5,000 eggs and possible juveniles of each nematode in a completely randomized design, with 10 replications per treatment with the nematodes and 10replications per treatment without inoculation (control. Forty-five days after inoculation, the roots systems were collected, washed and evaluated for egg production and estimated reproduction factor (RF. The results showed that, for M. javanica, the RF varied from 0.02to

  9. RESISTANCE OF POTATO GENOTYPES TO Meloidogyne javanica

    Directory of Open Access Journals (Sweden)

    JAQUELINE TAVARES SCHAFER

    2017-01-01

    Full Text Available The objective of this study was to evaluate the resistance of a group of clones and cultivars from the potato breeding program of Embrapa to Meloidogyne javanica . The experiment was conducted at Embrapa Temperate Climate, Pelotas / RS, under greenhouse conditions at temperatures of 25 ± 5°C. Individual potato plants of different genotypes [BRSIPR Bel, BRS F63 (Camila, CL02 - 05, F23 - 11 - 06, F32 - 02 - 06, F38 - 03 - 07, F189 - 09 - 06, F23 - 24 - 06 and F22 - 01 - 08], kept in pots with sterilized soil were inoculated with 5,000 eggs and J2 of M. javanica , using six replicates per treatment. The susceptible control, potato cultivar BRS Ana was inoculated with the same level of inoculum. Fifty - five days after inoculation, the number of galls on the roots of each plant was determined as well as the number of protuberances caused by nematodes in the different treatments. Then, the roots of each plant were processed for counting the number of eggs and J2, as well as determining the nematode reproduction factor (FR: final population / initial population. All genotypes were susceptible (FR> 1.00 to M. javanica . However, there were different levels of susceptibility among the cultivars tested.

  10. Mass spectrometric analysis of the secretome of Candida albicans

    NARCIS (Netherlands)

    Sorgo, A.G.; Heilmann, C.J.; Dekker, H.L.; Brul, S.; de Koster, C.G.; Klis, F.M.

    2010-01-01

    The pathogenic fungus Candida albicans secretes a considerable number of hydrolases and other proteins. In-depth studies of the C. albicans secretome could thus provide new candidates for diagnostic markers and vaccine development. We compared various growth conditions differing in pH, temperature

  11. Proteomic techniques for characterisation of mesenchymal stem cell secretome.

    Czech Academy of Sciences Publication Activity Database

    Kupcová Skalníková, Helena

    2013-01-01

    Roč. 95, č. 12 (2013), s. 2196-2211 ISSN 0300-9084 R&D Projects: GA MŠk ED2.1.00/03.0124; GA TA ČR TA01011466 Institutional support: RVO:67985904 Keywords : mesenchymal stem cells * secretome * exosome * conditioned medium * proteomics Subject RIV: CE - Biochemistry Impact factor: 3.123, year: 2013

  12. Lignin depolymerization by fungal secretomes and a microbial sink

    Energy Technology Data Exchange (ETDEWEB)

    Salvachúa, Davinia; Katahira, Rui; Cleveland, Nicholas S.; Khanna, Payal; Resch, Michael G.; Black, Brenna A.; Purvine, Samuel O.; Zink, Erika M.; Prieto, Alicia; Martínez, María J.; Martínez, Angel T.; Simmons, Blake A.; Gladden, John M.; Beckham, Gregg T.

    2016-08-25

    In Nature, powerful oxidative enzymes secreted by white rot fungi and some bacteria catalyze lignin depolymerization and some microbes are able to catabolize the resulting aromatic compounds as carbon and energy sources. Taken together, these two processes offer a potential route for microbial valorization of lignin. However, many challenges remain in realizing this concept, including that oxidative enzymes responsible for lignin depolymerization also catalyze polymerization of low molecular weight (LMW) lignin. Here, multiple basidiomycete secretomes were screened for ligninolytic enzyme activities in the presence of a residual lignin solid stream from a corn stover biorefinery, dubbed DMR-EH (Deacetylation, Mechanical Refining, and Enzymatic Hydrolysis) lignin. Two selected fungal secretomes, with high levels of laccases and peroxidases, were utilized for DMR-EH lignin depolymerization assays. The secretome from Pleurotus eryngii, which exhibited the highest laccase activity, reduced the lignin average molecular weight by 63% and 75% at pH 7 compared to the Mw of the control treated at the same conditions and the initial DMR-EH lignin, respectively, and was applied in further depolymerization assays as a function of time. As repolymerization was observed after 3 days of incubation, an aromatic-catabolic microbe (Pseudomonas putida KT2440) was incubated with the fungal secretome and DMR-EH lignin. These experiments demonstrated that the presence of the bacterium enhances lignin depolymerization, likely due to bacterial catabolism of LMW lignin, which may partially prevent repolymerization. In addition, proteomics was also applied to the P. eryngii secretome to identify the enzymes present in the fungal cocktail utilized for the depolymerization assays, which highlighted a significant number of glucose/ methanol/choline (GMC) oxidoreductases and laccases. Overall, this study demonstrates that ligninolytic enzymes can be used to partially depolymerize a solid, high

  13. Response of meloidogyne hapla to mycorrhiza fungi inoculation on ...

    African Journals Online (AJOL)

    Five arbuscular mycorrhiza fungi (AMF) isolated from pyrethrum were screened in the greenhouse for efficacy in improving pyrethrum growth and in suppressing a root-knot nematode, Meloidogyne hapla. The fungi screened were Glomus spp. (isolates LM61, ML34 and ML35), Scutellospora sp. (isolate KS74) and ...

  14. IDENTIFICACIÓN DE GENES CANDIDATOS DE PATOGENICIDAD EN LA INTERACCIÓN DE LA CEPA CENICAFE 9501 CON EL NEMÁTODO DEL NUDO RADICAL Meloidogyne spp. IDENTIFICATION OF PATHOGENIC CANDIDATES GENES IN THE INTERACTION OF THE CENICAFE 9501 STRAIN WITH THE ROOT KNOT NEMATODE Meloidogyne spp.

    Directory of Open Access Journals (Sweden)

    Nadya Lorena Cardona Bustos

    2008-12-01

    Full Text Available En 1997 se registró por primera vez el aislamiento de un hongo Hyphomycete de suelos de Chinchiná (Caldas, Colombia atacando huevos y otros estadios biológicos de las especies de nematodos fitoparásitos Meloidogyne incognita y M. javanica provenientes de lotes comerciales con café. Debido a la imposibilidad de clasificarlo taxonómicamente en los géneros actuales, este aislamiento se ha denominado temporalmente como CENICAFE 9501. Dado su potencial como biocontrolador, se propuso identificar genes candidatos involucrados en el proceso de patogenicidad de huevos de Meloidogyne. Con este fin se construyeron librerías diferenciales mediante el método de hibridación sustractiva. La secuenciación de 188 clones obtenidos permitió identificar 80 unigenes, de los cuales el mayor porcentaje correspondió a secuencias sin homología (32%, seguidas por genes candidatos a funciones de patogénesis (22%, transporte celular (17%, síntesis de proteínas (11% y en menor proporción aquellos involucrados con transcripción y metabolismo primario (18%. Dentro de aquellos genes que contienen marcos de lectura con homología a proteínas que intervienen en la patogenicidad se encuentran una peptidasa, un receptor para sitios de ubiquitinación, una deubiquinasa, una ubiquinona oxidoreductasa, proteína relacionada con la degradación de pared celular, glicosil hidrolasa e hidroxilasa de ácidos grasos, asi como una serin proteasa. Se hace necesaria la validación de las funciones putativas de estos genes candidatos con el fin de incrementar el conocimiento básico de la fisiología de este hongo con potencial biorregulador.In 1997 it was reported for the first time from soil isolation of a Hyphomycete fungus from Chinchiná ( Caldas, Colombia , attacking eggs and other biological stages of the plant parasite nematodes Meloidogyne incognita and M. javanica, from commercial coffee plots. Due to the impossibility to classify it taxonomically under current

  15. Uterine secretomics: a window on the maternal-embryo interface.

    Science.gov (United States)

    Cheong, Ying; Boomsma, Carolien; Heijnen, Cobi; Macklon, Nick

    2013-03-15

    The analysis of endometrial secretions offers a window on human peri-implantation events that have hitherto been difficult to study noninvasively. Uterine secretomic analysis provides a sensitive means of interrogating the contents of secretions, which have been shown to play a key role in determining endometrial receptivity and embryo-endometrial signaling, and in providing a nourishing environment to the preimplantation embryo. Compared with other means of assessing the endometrium with genomics or proteomics, secretomics offers a nondisruptive approach, allowing analysis during conception cycles. It also provides information on the downstream molecular profile directly encountered by the embryo, offering an integrated review of the complete endometrial surface rather than information representative of only a discrete biopsy site. In this article, recent data derived from uterine secretomics are reviewed. In addition to in vivo studies, recent data from in vitro studies that are changing our understanding of the role of the endometrium in embryo selection are reviewed. Finally, the role of uterine secretions in nutrition and early development programming of the embryo is considered. Copyright © 2013 American Society for Reproductive Medicine. Published by Elsevier Inc. All rights reserved.

  16. Secretome profiling of primary human skeletal muscle cells.

    Science.gov (United States)

    Hartwig, Sonja; Raschke, Silja; Knebel, Birgit; Scheler, Mika; Irmler, Martin; Passlack, Waltraud; Muller, Stefan; Hanisch, Franz-Georg; Franz, Thomas; Li, Xinping; Dicken, Hans-Dieter; Eckardt, Kristin; Beckers, Johannes; de Angelis, Martin Hrabe; Weigert, Cora; Häring, Hans-Ulrich; Al-Hasani, Hadi; Ouwens, D Margriet; Eckel, Jürgen; Kotzka, Jorg; Lehr, Stefan

    2014-05-01

    The skeletal muscle is a metabolically active tissue that secretes various proteins. These so-called myokines have been proposed to affect muscle physiology and to exert systemic effects on other tissues and organs. Yet, changes in the secretory profile may participate in the pathophysiology of metabolic diseases. The present study aimed at characterizing the secretome of differentiated primary human skeletal muscle cells (hSkMC) derived from healthy, adult donors combining three different mass spectrometry based non-targeted approaches as well as one antibody based method. This led to the identification of 548 non-redundant proteins in conditioned media from hSkmc. For 501 proteins, significant mRNA expression could be demonstrated. Applying stringent consecutive filtering using SignalP, SecretomeP and ER_retention signal databases, 305 proteins were assigned as potential myokines of which 12 proteins containing a secretory signal peptide were not previously described. This comprehensive profiling study of the human skeletal muscle secretome expands our knowledge of the composition of the human myokinome and may contribute to our understanding of the role of myokines in multiple biological processes. This article is part of a Special Issue entitled: Biomarkers: A Proteomic Challenge. © 2013.

  17. Investigation of the indigenous fungal community populating barley grains: Secretomes and xylanolytic potential

    DEFF Research Database (Denmark)

    Sultan, Abida; Frisvad, Jens Christian; Andersen, Birgit

    2017-01-01

    on medium containing barley flour or wheat arabinoxylan as sole carbon source. Their secretomes and xylanase activities were analyzed using SDS-PAGE and enzyme assays and were found to vary according to species and carbon source. Secretomes were dominated by cell wall degrading enzymes with xylanases...

  18. Grafting guava on cattley guava resistant to Meloidogyne enterolobii

    OpenAIRE

    Robaina,Renata Rodrigues; Campos,Graziella Siqueira; Marinho,Cláudia Sales; Souza,Ricardo Moreira; Bremenkamp,Cíntia Aparecida

    2015-01-01

    The use of resistant rootstocks could be a promising method to control nematodeMeloidogyne enterolobiiin commercial plantations of guava. The present study aimed to evaluate the success of grafting guava as a scion on accessions of cattley guava as rootstocks resistant to M. enterolobii.The treatments consisted of the rootstocks cattley guava plants (three accessions of Psidium cattleyanum) and common guava (control). In the apical wedge grafting method, scion of Paluma cultivated variety was...

  19. Secretome analysis of Trypanosoma cruzi by proteomics studies.

    Directory of Open Access Journals (Sweden)

    Jean-Yves Brossas

    Full Text Available Chagas disease is a debilitating often fatal disease resulting from infection by the protozoan parasite Trypanosoma cruzi. Chagas disease is endemic in 21 countries of the Americas, and it is an emerging disease in other countries as a result of migration. Given the chronic nature of the infection where intracellular parasites persist for years, the diagnosis of T. cruzi by direct detection is difficult, whereas serologic tests though sensitive may yield false-positive results. The development of new rapid test based on the identification of soluble parasitic antigens in serum would be a real innovation in the diagnosis of Chagas disease.To identify new soluble biomarkers that may improve diagnostic tests, we investigated the proteins secreted by T. cruzi using mass spectrometric analyses of conditioned culture media devoid of serum collected during the emergence of trypomastigotes from infected Vero cells. In addition, we compared the secretomes of two T. cruzi strains from DTU Tc VI (VD and CL Brener.Analysis of the secretome collected during the emergence of trypomastigotes from Vero cells led to the identification of 591 T. cruzi proteins. Three hundred sixty three proteins are common to both strains and most belong to different multigenic super families (i.e. TcS, GP63, MASP, and DGF1. Ultimately we have established a list of 94 secreted proteins, common to both DTU Tc VI strains that do not belong to members of multigene families.This study provides the first comparative analysis of the secretomes from two distinct T. cruzi strains of DTU TcVI. This led us to identify a subset of common secreted proteins that could potentially serve as serum markers for T. cruzi infection. Their potential could now be evaluated, with specific antibodies using sera collected from patients and residents from endemic regions.

  20. Secretome analysis of Trypanosoma cruzi by proteomics studies.

    Science.gov (United States)

    Brossas, Jean-Yves; Gulin, Julián Ernesto Nicolás; Bisio, Margarita Maria Catalina; Chapelle, Manuel; Marinach-Patrice, Carine; Bordessoules, Mallaury; Palazon Ruiz, George; Vion, Jeremy; Paris, Luc; Altcheh, Jaime; Mazier, Dominique

    2017-01-01

    Chagas disease is a debilitating often fatal disease resulting from infection by the protozoan parasite Trypanosoma cruzi. Chagas disease is endemic in 21 countries of the Americas, and it is an emerging disease in other countries as a result of migration. Given the chronic nature of the infection where intracellular parasites persist for years, the diagnosis of T. cruzi by direct detection is difficult, whereas serologic tests though sensitive may yield false-positive results. The development of new rapid test based on the identification of soluble parasitic antigens in serum would be a real innovation in the diagnosis of Chagas disease. To identify new soluble biomarkers that may improve diagnostic tests, we investigated the proteins secreted by T. cruzi using mass spectrometric analyses of conditioned culture media devoid of serum collected during the emergence of trypomastigotes from infected Vero cells. In addition, we compared the secretomes of two T. cruzi strains from DTU Tc VI (VD and CL Brener). Analysis of the secretome collected during the emergence of trypomastigotes from Vero cells led to the identification of 591 T. cruzi proteins. Three hundred sixty three proteins are common to both strains and most belong to different multigenic super families (i.e. TcS, GP63, MASP, and DGF1). Ultimately we have established a list of 94 secreted proteins, common to both DTU Tc VI strains that do not belong to members of multigene families. This study provides the first comparative analysis of the secretomes from two distinct T. cruzi strains of DTU TcVI. This led us to identify a subset of common secreted proteins that could potentially serve as serum markers for T. cruzi infection. Their potential could now be evaluated, with specific antibodies using sera collected from patients and residents from endemic regions.

  1. In-depth proteomic profiling of the uveal melanoma secretome

    Science.gov (United States)

    Prendergast, Samuel; Simpson, Deborah; Hammond, Dean E.; Madigan, Michele C.; Beynon, Robert J.; Coupland, Sarah E.

    2016-01-01

    Uveal melanoma (UM), the most common primary intraocular tumour in adults, is characterised by a high frequency of metastases to the liver, typically with a fatal outcome. Proteins secreted from cancer cells (‘secretome’) are biologically important molecules thought to contribute to tumour progression. We examined the UM secretome by applying a label-free nanoLCMS/MS proteomic approach to profile proteins secreted into culture media by primary UM tumours with a high− (HR; n = 11) or low− (LR; n = 4) metastatic risk, compared to normal choroidal melanocytes (NCM) from unaffected post-mortem eyes. Across the three groups, 1843 proteins were identified at a 1% false discovery rate; 758 of these by at least 3 unique peptides, and quantified. The majority (539/758, 71%) of proteins were classified as secreted either by classical (144, 19%), non-classical (43, 6%) or exosomal (352, 46%) mechanisms. Bioinformatic analyzes showed that the secretome composition reflects biological differences and similarities of the samples. Ingenuity® pathway analysis of the secreted protein dataset identified abundant proteins involved in cell proliferation-, growth- and movement. Hepatic fibrosis/hepatic stellate cell activation and the mTORC1-S6K signalling axis were among the most differentially regulated biological processes in UM as compared with NCM. Further analysis of proteins upregulated ≥ 2 in HR-UM only, identified exosomal proteins involved in extracellular matrix remodelling and cancer cell migration/invasion; as well as classically secreted proteins, possibly representing novel biomarkers of metastatic disease. In conclusion, UM secretome analysis identifies novel proteins and pathways that may contribute to metastatic development at distant sites, particularly in the liver. PMID:27391064

  2. Therapeutic Potential of Dental Pulp Stem Cell Secretome for Alzheimer's Disease Treatment: An In Vitro Study

    Science.gov (United States)

    Ahmed, Nermeen El-Moataz Bellah; Murakami, Masashi; Hirose, Yujiro; Nakashima, Misako

    2016-01-01

    The secretome obtained from stem cell cultures contains an array of neurotrophic factors and cytokines that might have the potential to treat neurodegenerative conditions. Alzheimer's disease (AD) is one of the most common human late onset and sporadic neurodegenerative disorders. Here, we investigated the therapeutic potential of secretome derived from dental pulp stem cells (DPSCs) to reduce cytotoxicity and apoptosis caused by amyloid beta (Aβ) peptide. We determined whether DPSCs can secrete the Aβ-degrading enzyme, neprilysin (NEP), and evaluated the effects of NEP expression in vitro by quantitating Aβ-degrading activity. The results showed that DPSC secretome contains higher concentrations of VEGF, Fractalkine, RANTES, MCP-1, and GM-CSF compared to those of bone marrow and adipose stem cells. Moreover, treatment with DPSC secretome significantly decreased the cytotoxicity of Aβ peptide by increasing cell viability compared to nontreated cells. In addition, DPSC secretome stimulated the endogenous survival factor Bcl-2 and decreased the apoptotic regulator Bax. Furthermore, neprilysin enzyme was detected in DPSC secretome and succeeded in degrading Aβ 1–42 in vitro in 12 hours. In conclusion, our study demonstrates that DPSCs may serve as a promising source for secretome-based treatment of Alzheimer's disease. PMID:27403169

  3. Cancer Secretome May Influence BSP and DSP Expression in Human Salivary Gland Cells.

    Science.gov (United States)

    Hamilton, Samantha Lynn; Ferando, Blake; Eapen, Asha Sarah; Yu, Jennifer Chian; Joy, Anita Rose

    2017-03-01

    One of the biggest challenges in managing head and neck cancers, especially salivary gland cancers, is the identification of secreted biomarkers of the disease that can be evaluated noninvasively. A relevant source of enriched tumor markers could potentially be found in the tumor secretome. Although numerous studies have evaluated secretomes from various cancers, the influence of the cancer secretome derived from salivary gland cancers on the behavior of normal cells has not yet been elucidated. Our data indicate that secretome derived from salivary gland cancer cells can influence the expression of two potential biomarkers of oral cancer-namely, bone sialoprotein (BSP) and dentin sialoprotein (DSP)-in normal salivary gland cells. Using routine immunohistochemistry, immunofluorescence, and immunoblotting techniques, we demonstrate an enrichment of BSP and DSP in human salivary gland (HSG) cancer tissue, unique localizations of BSP and DSP in HSG cancer cells, and enriched expression of BSP and DSP in normal salivary gland cells exposed to a cancer secretome. The secretome domain of the cancer microenvironment could alter signaling cascades responsible for normal cell proliferation, migration, and invasion, thus enhancing cancer cell survival and the potential for cancer progression. The cancer secretome may be critical in maintaining and stimulating "cancer-ness," thus potentially promoting specific hallmarks of metastasis.

  4. Exploring the Secretomes of Microbes and Microbial Communities Using Filamentous Phage Display

    Directory of Open Access Journals (Sweden)

    Dragana eGagic

    2016-04-01

    Full Text Available Microbial surface and secreted proteins (the secretome contain a large number of proteins that interact with other microbes, host and/or environment. These proteins are exported by the coordinated activities of the protein secretion machinery present in the cell. A group of phage, called filamentous phage, have the ability to hijack the cellular protein secretion machinery in order to amplify and assemble via a secretion-like process. This ability has been harnessed in the use of filamentous phage of Escherichia coli in biotechnology applications, including screening large libraries of variants for binding to bait of interest, from tissues in vivo to pure proteins or even inorganic substrates. In this review we discuss the roles of secretome proteins in pathogenic and non-pathogenic bacteria and corresponding secretion pathways. We describe the basics of phage display technology and its variants applied to discovery of bacterial proteins that have functions of interest for bacterial colonization and pathogenesis, through filamentous phage display library screening. Published literature also shows that phage display is suitable for secretome protein display as a tool for identification immunogenic peptides and can be used for discovery of vaccine candidates. Secretome selection aided by next-generation sequence analysis can also be used for selective display of the secretome at a microbial community scale, the latter revealing the richness of secretome functions of interest and surprising versatility in filamentous phage display of secretome proteins from large number of Gram-negative as well as Gram-positive bacteria and archaea.

  5. Proteomic Studies of Cholangiocarcinoma and Hepatocellular Carcinoma Cell Secretomes

    Directory of Open Access Journals (Sweden)

    Chantragan Srisomsap

    2010-01-01

    Full Text Available Cholangiocarcinoma (CCA and hepatocellular carcinoma (HCC occur with relatively high incidence in Thailand. The secretome, proteins secreted from cancer cells, are potentially useful as biomarkers of the diseases. Proteomic analysis was performed on the secreted proteins of cholangiocarcinoma (HuCCA-1 and hepatocellular carcinoma (HCC-S102, HepG2, SK-Hep-1, and Alexander cell lines. The secretomes of the five cancer cell lines were analyzed by SDS-PAGE combined with LC/MS/MS. Sixty-eight proteins were found to be expressed only in HuCCA-1. Examples include neutrophil gelatinase-associated lipocalin (lipocalin 2, laminin 5 beta 3, cathepsin D precursor, desmoplakin, annexin IV variant, and annexin A5. Immunoblotting was used to confirm the presence of lipocalin 2 in conditioned media and cell lysate of 5 cell lines. The results showed that lipocalin 2 was a secreted protein which is expressed only in the conditioned media of the cholangiocarcinoma cell line. Study of lipocalin 2 expression in different types of cancer and normal tissues from cholangiocarcinoma patients showed that lipocalin 2 was expressed only in the cancer tissues. We suggest that lipocalin 2 may be a potential biomarker for cholangiocarcinoma.

  6. Potential of Leguminous Cover Crops in Management of a Mixed Population of Root-knot Nematodes (Meloidogyne spp.).

    Science.gov (United States)

    Osei, Kingsley; Gowen, Simon R; Pembroke, Barbara; Brandenburg, Rick L; Jordan, David L

    2010-09-01

    Root-knot nematode is an important pest in agricultural production worldwide. Crop rotation is the only management strategy in some production systems, especially for resource poor farmers in developing countries. A series of experiments was conducted in the laboratory with several leguminous cover crops to investigate their potential for managing a mixture of root-knot nematodes (Meloidogyne arenaria, M. incognita, M. javanica). The root-knot nematode mixture failed to multiply on Mucuna pruriens and Crotalaria spectabilis but on Dolichos lablab the population increased more than 2- fold when inoculated with 500 and 1,000 nematodes per plant. There was no root-galling on M. pruriens and C. spectabilis but the gall rating was noted on D. lablab. Greater mortality of juvenile root-knot nematodes occurred when exposed to eluants of roots and leaves of leguminous crops than those of tomato; 48.7% of juveniles died after 72 h exposure to root eluant of C. spectabilis. The leaf eluant of D. lablab was toxic to nematodes but the root eluant was not. Thus, different parts of a botanical contain different active ingredients or different concentrations of the same active ingredient. The numbers of root-knot nematode eggs that hatched in root exudates of M. pruriens and C. spectabilis were significantly lower (20% and 26%) than in distilled water, tomato and P. vulgaris root exudates (83%, 72% and 89%) respectively. Tomato lacks nematotoxic compounds found in M. pruriens and C. spectabilis. Three months after inoculating plants with 1,000 root-knot nematode juveniles the populations in pots with M. pruriens, C. spectabilis and C. retusa had been reduced by approximately 79%, 85% and 86% respectively; compared with an increase of 262% nematodes in pots with Phaseolus vulgaris. There was significant reduction of 90% nematodes in fallow pots with no growing plant. The results from this study demonstrate that some leguminous species contain compounds that either kill root

  7. Endothelial Progenitor Cell Secretome and Oligovascular Repair in a Mouse Model of Prolonged Cerebral Hypoperfusion.

    Science.gov (United States)

    Maki, Takakuni; Morancho, Anna; Martinez-San Segundo, Pablo; Hayakawa, Kazuhide; Takase, Hajime; Liang, Anna C; Gabriel-Salazar, Marina; Medina-Gutiérrez, Esperanza; Washida, Kazuo; Montaner, Joan; Lok, Josephine; Lo, Eng H; Arai, Ken; Rosell, Anna

    2018-04-01

    Endothelial progenitor cells (EPCs) have been extensively investigated as a therapeutic approach for repairing the vascular system in cerebrovascular diseases. Beyond vascular regeneration per se, EPCs may also release factors that affect the entire neurovascular unit. Here, we aim to study the effects of the EPC secretome on oligovascular remodeling in a mouse model of white matter injury after prolonged cerebral hypoperfusion. The secretome of mouse EPCs was analyzed with a proteome array. In vitro, the effects of the EPC secretome and its factor angiogenin were assessed on primary oligodendrocyte precursor cells and mature human cerebral microvascular endothelial cells (hCMED/D3). In vivo, mice were subjected to permanent bilateral common carotid artery stenosis, then treated with EPC secretome at 24 hours and at 1 week, and cognitive outcome was evaluated with the Y maze test together with oligodendrocyte precursor cell proliferation/differentiation and vascular density in white matter at 4 weeks. Multiple growth factors, cytokines, and proteases were identified in the EPC secretome, including angiogenin. In vitro, the EPC secretome significantly enhanced endothelial and oligodendrocyte precursor cell proliferation and potentiated oligodendrocyte precursor cell maturation. Angiogenin was proved to be a key factor since pharmacological blockade of angiogenin signaling negated the positive effects of the EPC secretome. In vivo, treatment with the EPC secretome increased vascular density, myelin, and mature oligodendrocytes in white matter and rescued cognitive function in the mouse hypoperfusion model. Factors secreted by EPCs may ameliorate white matter damage in the brain by boosting oligovascular remodeling. © 2018 American Heart Association, Inc.

  8. Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita

    NARCIS (Netherlands)

    Martínez-Medina, Ainhoa; Fernandez, Ivan; Lok, Gerrit B; Pozo, María J; Pieterse, Corné M J; Van Wees, Saskia C M

    Beneficial root endophytes such as Trichoderma spp. can reduce infections by parasitic nematodes through triggering host defences. Little is currently known about the complex hormone signalling underlying the induction of resistance. In this study, we investigated whether Trichoderma modulates the

  9. Metagenomic insights into communities, functions of endophytes, and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato roots.

    Science.gov (United States)

    Tian, Bao-Yu; Cao, Yi; Zhang, Ke-Qin

    2015-11-25

    Endophytes are known to play important roles in plant's health and productivity. In this study, we investigated the root microbiome of tomato in association with infection by root knot nematodes. Our objectives were to observe the effects and response of the bacterial endophytes before nematode attacks and to reveal the functional attributes of microbes in plant health and nematode pathogenesis. Community analysis of root-associated microbiomes in healthy and nematode-infected tomatoes indicated that nematode infections were associated with variation and differentiation of the endophyte and rhizosphere bacterial populations in plant roots. The community of the resident endophytes in tomato root was significantly affected by nemato-pathogenesis. Remarkably, some bacterial groups in the nematode feeding structure, the root gall, were specifically enriched, suggesting an association with nematode pathogenesis. Function-based metagenomic analysis indicated that the enriched bacterial populations in root gall harbored abundant genes related to degradation of plant polysaccharides, carbohydrate and protein metabolism, and biological nitrogen fixation. Our data indicated that some of the previously assumed beneficial endophytes or bacterial associates with nematode might be involved in nematode infections of the tomato roots.

  10. Dataset for the proteomic inventory and quantitative analysis of the breast cancer hypoxic secretome associated with osteotropism

    DEFF Research Database (Denmark)

    Cox, T.R.; Schoof, Erwin; Gartland, A.

    2015-01-01

    The cancer secretome includes all of the macromolecules secreted by cells into their microenvironment. Cancer cell secretomes are significantly different to that of normal cells reflecting the changes that normal cells have undergone during their transition to malignancy. More importantly, cancer...... secretomes are known to be active mediators of both local and distant host cells and play an important role in the progression and dissemination of cancer. Here we have quantitatively profiled both the composition of breast cancer secretomes associated with osteotropism, and their modulation under normoxic...

  11. Analytical and computational approaches to define the Aspergillus niger secretome

    Energy Technology Data Exchange (ETDEWEB)

    Tsang, Adrian; Butler, Gregory D.; Powlowski, Justin; Panisko, Ellen A.; Baker, Scott E.

    2009-03-01

    We used computational and mass spectrometric approaches to characterize the Aspergillus niger secretome. The 11,200 gene models predicted in the genome of A. niger strain ATCC 1015 were the data source for the analysis. Depending on the computational methods used, 691 to 881 proteins were predicted to be secreted proteins. We cultured A. niger in six different media and analyzed the extracellular proteins produced using mass spectrometry. A total of 222 proteins were identified, with 39 proteins expressed under all six conditions and 74 proteins expressed under only one condition. The secreted proteins identified by mass spectrometry were used to guide the correction of about 20 gene models. Additional analysis focused on extracellular enzymes of interest for biomass processing. Of the 63 glycoside hydrolases predicted to be capable of hydrolyzing cellulose, hemicellulose or pectin, 94% of the exo-acting enzymes and only 18% of the endo-acting enzymes were experimentally detected.

  12. Dynamics of the Skeletal Muscle Secretome during Myoblast Differentiation

    DEFF Research Database (Denmark)

    Henningsen, Jeanette; Rigbolt, Kristoffer T G; Blagoev, Blagoy

    2010-01-01

    During recent years, increased efforts have focused on elucidating the secretory function of skeletal muscle. Through secreted molecules, skeletal muscle affects local muscle biology in an auto/paracrine manner as well as having systemic effects on other tissues. Here we used a quantitative...... proteomics platform to investigate the factors secreted during the differentiation of murine C2C12 skeletal muscle cells. Using triple encoding stable isotope labeling by amino acids in cell culture, we compared the secretomes at three different time points of muscle differentiation and followed the dynamics...... of the skeletal muscle as a prominent secretory organ. In addition to previously reported molecules, we identified many secreted proteins that have not previously been shown to be released from skeletal muscle cells nor shown to be differentially released during the process of myogenesis. We found 188...

  13. Mesenchymal stem cell secretome and regenerative therapy after cancer.

    Science.gov (United States)

    Zimmerlin, Ludovic; Park, Tea Soon; Zambidis, Elias T; Donnenberg, Vera S; Donnenberg, Albert D

    2013-12-01

    Cancer treatment generally relies on tumor ablative techniques that can lead to major functional or disfiguring defects. These post-therapy impairments require the development of safe regenerative therapy strategies during cancer remission. Many current tissue repair approaches exploit paracrine (immunomodulatory, pro-angiogenic, anti-apoptotic and pro-survival effects) or restoring (functional or structural tissue repair) properties of mesenchymal stem/stromal cells (MSC). Yet, a major concern in the application of regenerative therapies during cancer remission remains the possible triggering of cancer recurrence. Tumor relapse implies the persistence of rare subsets of tumor-initiating cancer cells which can escape anti-cancer therapies and lie dormant in specific niches awaiting reactivation via unknown stimuli. Many of the components required for successful regenerative therapy (revascularization, immunosuppression, cellular homing, tissue growth promotion) are also critical for tumor progression and metastasis. While bi-directional crosstalk between tumorigenic cells (especially aggressive cancer cell lines) and MSC (including tumor stroma-resident populations) has been demonstrated in a variety of cancers, the effects of local or systemic MSC delivery for regenerative purposes on persisting cancer cells during remission remain controversial. Both pro- and anti-tumorigenic effects of MSC have been reported in the literature. Our own data using breast cancer clinical isolates have suggested that dormant-like tumor-initiating cells do not respond to MSC signals, unlike actively dividing cancer cells which benefited from the presence of supportive MSC. The secretome of MSC isolated from various tissues may partially diverge, but it includes a core of cytokines (i.e. CCL2, CCL5, IL-6, TGFβ, VEGF), which have been implicated in tumor growth and/or metastasis. This article reviews published models for studying interactions between MSC and cancer cells with a focus

  14. Genome-wide computational analysis of the secretome of brown algae (Phaeophyceae).

    Science.gov (United States)

    Terauchi, Makoto; Yamagishi, Takahiro; Hanyuda, Takeaki; Kawai, Hiroshi

    2017-04-01

    Brown algae have evolved complex multicellularity in the heterokont lineage. They are phylogenetically distant to land plants, fungi and animals. Especially, the members of Laminariales (so-called kelps) have developed highly differentiated tissues. Extracellular matrix (ECM) plays pivotal roles in a number of essential processes in multicellular organisms, such as cell adhesion, cell and tissue differentiations, cell-to-cell communication, and responses to environmental stimuli. In these processes, a set of extracellular secreted proteins called the secretome operates remodeling of the physicochemical nature of ECM and signal transduction by interacting with cell surface proteins and signaling molecules. Characterization of the secretome is a critical step to clarify the contributions of ECM to the multicellularity of brown algae. However, the identity of the brown algal secretome has been poorly understood. In order to reveal the repertory of the brown algal secretome and its involvement in the evolution of Laminariales, we conducted a genome-wide analysis of the brown algal secretome utilizing the published complete genome data of Ectocarpus siliculosus and Saccharina japonica as well as newly obtained RNA-seq data of seven laminarialean species (Agarum clathratum, Alaria crassifolia, Aureophycus aleuticus, Costaria costata, Pseudochorda nagaii, Saccharina angustata and Undaria pinnatifida) largely covering the laminarialean families. We established the in silico pipeline to systematically and accurately detect the secretome by combining multiple prediction algorithms for the N-terminal signal peptide and transmembrane domain within the protein sequence. From 16,189 proteins of E. siliculosus and 18,733 proteins of S. japonica, 552 and 964 proteins respectively were predicted to be classified as the secretome. Conserved domain analysis showed that the domain repertory were very similar to each other, and that of the brown algal secretome was partially common

  15. The in vitro secretome of Mycosphaerella fijiensis induces cell death in banana leaves.

    Science.gov (United States)

    Chuc-Uc, José; Brito-Argáez, Ligia; Canto-Canché, Blondy; Tzec-Simá, Miguel; Rodríguez-García, Cecilia; Peraza-Echeverría, Leticia; Peraza-Echeverría, Santy; James-Kay, Andrew; Cruz-Cruz, Carlos Alberto; Peña-Rodríguez, Luis Manuel; Islas-Flores, Ignacio

    2011-06-01

    The hemibiotrophic filamentous fungus Mycosphaerella fijiensis causes the banana foliar disease known as black Sigatoka, responsible for major worldwide losses in the banana fruit industry. In this work the in vitro secretome of M. fijiensis was characterized. Native and denaturant polyacrylamide gel protease assays showed the M. fijiensis secretome contains protease activity capable of degrading gelatin. Necrotic lesions on leaves were produced by application of the in vitro secretome to the surface of one black Sigatoka-resistant banana wild species, one susceptible cultivar and the non-host plant Carica papaya. To distinguish if necrosis by the secretome is produced by phytotoxins or proteins, the latter ones were precipitated with ammonium sulfate and applied in native or denatured forms onto leaves of the same three plant species. Proteins applied in both preparations were able to produce necrotic lesions. Application of Pronase, a commercial bacterial protease suggested that the necrosis was, at least in part, caused by protease activity from the M. fijiensis secretome. The ability to cause necrotic lesions between M. fijiensis secreted- and ammonium sulfate-precipitated proteins, and purified lipophilic or hydrophilic phytotoxins, was compared. The results suggested that leaf necrosis arises from the combined action of non-host specific hydrolytic activities from the secreted proteins and the action of phytotoxins. This is the first characterization of the M. fijiensis protein secretome produced in vitro but, more importantly, it is also the first time the M. fijiensis secretome has been shown to contain virulence factors capable of causing necrosis to its natural host. Copyright © 2011 Elsevier Masson SAS. All rights reserved.

  16. Biology of Meloidogyne platani Hirschmann Parasitic on Sycamore, Platanus occidentalis.

    Science.gov (United States)

    Al-Hazmi, A S; Sasser, J N

    1982-04-01

    The development of Meloidogyne platani on sycamore was followed for 40 days (22-28 C). Juveniles penetrated the feeder roots behind the root cap and invaded the vascular cylinder within 3 days after inoculation. All subsequent development of the nematodes and host effects occurred only within the stele. The second juvenile molt and sex differentiation occurred by the 17th day. Young females were observed by the 26th day. Eggs were observed inside the roots by the 35th day and were exposed to the surface of galls by the 40th day. In pathogenicity studies, a significant negative correlation was shown to exist between fresh shoot and root weights and inoculum density. Besides sycamore, white ash was the only hardwood species tested to become infected. Of the herbacious plants tested, tobacco was heavily galled, tomato and watermelon moderately galled, and pepper only slightly galled. Egg production was moderate on tobacco, slight on tomato and watermelon, and absent on pepper.

  17. Comparative secretome analysis suggests low plant cell wall degrading capacity in Frankia symbionts

    Directory of Open Access Journals (Sweden)

    Normand Philippe

    2008-01-01

    Full Text Available Abstract Background Frankia sp. strains, the nitrogen-fixing facultative endosymbionts of actinorhizal plants, have long been proposed to secrete hydrolytic enzymes such as cellulases, pectinases, and proteases that may contribute to plant root penetration and formation of symbiotic root nodules. These or other secreted proteins might logically be involved in the as yet unknown molecular interactions between Frankia and their host plants. We compared the genome-based secretomes of three Frankia strains representing diverse host specificities. Signal peptide detection algorithms were used to predict the individual secretomes of each strain, and the set of secreted proteins shared among the strains, termed the core Frankia secretome. Proteins in the core secretome may be involved in the actinorhizal symbiosis. Results The Frankia genomes have conserved Sec (general secretory and Tat (twin arginine translocase secretion systems. The potential secretome of each Frankia strain comprised 4–5% of the total proteome, a lower percentage than that found in the genomes of other actinobacteria, legume endosymbionts, and plant pathogens. Hydrolytic enzymes made up only a small fraction of the total number of predicted secreted proteins in each strain. Surprisingly, polysaccharide-degrading enzymes were few in number, especially in strain CcI3, with more esterolytic, lipolytic and proteolytic enzymes having signal peptides. A total of 161 orthologous proteins belong to the core Frankia secretome. Of these, 52 also lack homologs in closely related actinobacteria, and are termed "Frankia-specific." The genes encoding these conserved secreted proteins are often clustered near secretion machinery genes. Conclusion The predicted secretomes of Frankia sp. are relatively small and include few hydrolases, which could reflect adaptation to a symbiotic lifestyle. There are no well-conserved secreted polysaccharide-degrading enzymes present in all three Frankia

  18. The secretome signature of reactive glial cells and its pathological implications.

    Science.gov (United States)

    Jha, Mithilesh Kumar; Seo, Minchul; Kim, Jong-Heon; Kim, Byung-Gyu; Cho, Je-Yoel; Suk, Kyoungho

    2013-11-01

    Glial cells are non-neuronal components of the central nervous system (CNS). They are endowed with diverse functions and are provided with tools to detect their own activities and those of neighboring neurons. Glia and neurons are in continuous reciprocal communication under both physiological and neuropathological conditions, and glia secrete various guidance factors or proteinaceous signals that service vital neuronal-glial interactions in health and disease. Analysis and profiling of glial secretome, especially of microglia and astrocytes, have raised new expectations for the diagnosis and treatment of CNS disorders, and the availability of a catalog of glia-secreted proteins might provide an origin for further research on the complex extracellular signaling mediated by glial cells. Components of the glial secretome play important roles as mediators and modulators of brain structure and function during neuroprotection and neurodegeneration. Therapeutic hypothermia has been acclaimed an effective modulator of brain injury via its substantial effect on the protein expression profiles of glia. Furthermore, emerging proteomic tools and methodologies make feasible the documentation of the reactive glial secretome signature. This review focuses on reactive glial cells and the uniqueness of their secretome during diverse neuropathological conditions. This article is part of a Special Issue entitled: An Updated Secretome. Copyright © 2012 Elsevier B.V. All rights reserved.

  19. Dataset for the proteomic inventory and quantitative analysis of the breast cancer hypoxic secretome associated with osteotropism

    Directory of Open Access Journals (Sweden)

    Thomas R. Cox

    2015-12-01

    Full Text Available The cancer secretome includes all of the macromolecules secreted by cells into their microenvironment. Cancer cell secretomes are significantly different to that of normal cells reflecting the changes that normal cells have undergone during their transition to malignancy. More importantly, cancer secretomes are known to be active mediators of both local and distant host cells and play an important role in the progression and dissemination of cancer. Here we have quantitatively profiled both the composition of breast cancer secretomes associated with osteotropism, and their modulation under normoxic and hypoxic conditions. We detect and quantify 162 secretome proteins across all conditions which show differential hypoxic induction and association with osteotropism. Mass Spectrometry proteomics data have been deposited to the ProteomeXchange Consortium with the dataset identifier PXD000397 and the complete proteomic, bioinformatic and biological analyses are reported in Cox et al. (2015 [1].

  20. Temperature modulates the secretome of the phytopathogenic fungus Lasiodiplodia theobromae

    Directory of Open Access Journals (Sweden)

    Carina Félix

    2016-08-01

    Full Text Available Environmental alterations modulate host-microorganism interactions. Little is known about how climate changes can trigger pathogenic features on symbiont or mutualistic microorganisms. Current climate models predict increased environmental temperatures.The exposing of phytopathogens to these changing conditions can have particularly relevant consequences for economically important species and for humans. The impact on pathogen/host interaction and the shift on their biogeographical range can induce different levels of virulence in new hosts, allowing massive losses in agricultural and health fields.Lasiodiplodia theobromae is a phytopathogenic fungus responsible for a number of diseases in various plants. It has also been described as an opportunist pathogen in humans, causing infections with different levels of severity. Lasiodiplodia theobromae has a high capacity of adaptation to different environments, such as woody plants, moist argillaceous soils or even humans, being able to grow and infect hosts in a wide range of temperatures (9ºC-39ºC. Nonetheless, the effect of an increase of temperature, as predicted in climate change models, on L. theobromae is unknown.Here we explore the effect of temperature on two strains of L. theobromae – an environmental strain CAA019, and a clinical strain, CBS339.90.We show that both strains are cytotoxic to mammalian cells but while the environmental strain is cytotoxic mainly at 25ºC, the clinical strain is cytotoxic mainly at 30ºC and 37ºC.Extracellular gelatinolytic, xylanolytic, amylolytic and cellulolytic activities at 25ºC and 37ºC were characterized by zymography and the secretome of both strains grown at 25ºC, 30ºC and 37ºC were characterized by electrophoresis and by Orbitrap LC-MS/MS. More than 75% of the proteins were identified, mostly enzymes (glycosyl hydrolases and proteases. The strains showed different protein profiles, which were affected by growth temperature. Also, strain

  1. Cellulomonas fimi secretomes: In vivo and in silico approaches for the lignocellulose bioconversion.

    Science.gov (United States)

    Spertino, Stefano; Boatti, Lara; Icardi, Sara; Manfredi, Marcello; Cattaneo, Chiara; Marengo, Emilio; Cavaletto, Maria

    2018-03-20

    Lignocellulose degradation is a challenging step for value added products and biofuels production. Cellulomonas fimi secretes complex mixtures of carbohydrate active enzymes (CAZymes) which synergistically degrade cellulose and hemicelluloses. Their characterization may provide new insights for enzymatic cocktails implementation. Bioinformatic analysis highlighted 1127 secreted proteins, constituting the in silico secretome, graphically represented in a 2DE map. According to Blast2GO functional annotation, many of these are involved in carbohydrates metabolism. In vivo secretomes were obtained, growing C. fimi on glucose, CMC or wheat straw for 24 h. Zymography revealed degradative activity on carbohydrates and proteomic analysis identified some CAZymes, only in secretomes obtained with CMC and wheat straw. An interaction between cellobiohydrolases is proposed as a strategy adopted by soluble multimodular cellulases. Such approach can be crucial for a better characterization and industrial exploitation of the synergism among C. fimi enzymes. Copyright © 2018 Elsevier B.V. All rights reserved.

  2. Analysis of secretome of breast cancer cell line with an optimized semi-shotgun method

    International Nuclear Information System (INIS)

    Tang Xiaorong; Yao Ling; Chen Keying; Hu Xiaofang; Xu Lisa; Fan Chunhai

    2009-01-01

    Secretome, the totality of secreted proteins, is viewed as a promising pool of candidate cancer biomarkers. Simple and reliable methods for identifying secreted proteins are highly desired. We used an optimized semi-shotgun liquid chromatography followed by tandem mass spectrometry (LC-MS/MS) method to analyze the secretome of breast cancer cell line MDA-MB-231. A total of 464 proteins were identified. About 63% of the proteins were classified as secreted proteins, including many promising breast cancer biomarkers, which were thought to be correlated with tumorigenesis, tumor development and metastasis. These results suggest that the optimized method may be a powerful strategy for cell line secretome profiling, and can be used to find potential cancer biomarkers with great clinical significance. (authors)

  3. Construction and Screening of a Lentiviral Secretome Library.

    Science.gov (United States)

    Liu, Tao; Jia, Panpan; Ma, Huailei; Reed, Sean A; Luo, Xiaozhou; Larman, H Benjamin; Schultz, Peter G

    2017-06-22

    Over 2,000 human proteins are predicted to be secreted, but the biological function of the many of these proteins is still unknown. Moreover, a number of these proteins may act as new therapeutic agents or be targets for the development of therapeutic antibodies. To further explore the extracellular proteome, we have developed a secretome-enriched open reading frame (ORF) library that can be readily screened for autocrine activity in cell-based phenotypic or reporter assays. Next-generation sequencing (NGS) and database analysis predict that the library contains approximately 900 ORFs encoding known secreted proteins (accounting for 77.8% of the library), as well as genes encoding potentially unknown secreted proteins. In a proof-of-principle study, human TF-1 cells were screened for proliferative factors, and the known cytokine GMCSF was identified as a dominant hit. This library offers a relatively low-cost and straightforward approach for functional autocrine screens of secreted proteins. Copyright © 2017 Elsevier Ltd. All rights reserved.

  4. Grafting guava on cattley guava resistant to Meloidogyne enterolobii

    Directory of Open Access Journals (Sweden)

    Renata Rodrigues Robaina

    2015-09-01

    Full Text Available The use of resistant rootstocks could be a promising method to control nematodeMeloidogyne enterolobiiin commercial plantations of guava. The present study aimed to evaluate the success of grafting guava as a scion on accessions of cattley guava as rootstocks resistant to M. enterolobii.The treatments consisted of the rootstocks cattley guava plants (three accessions of Psidium cattleyanum and common guava (control. In the apical wedge grafting method, scion of Paluma cultivated variety was used. The experiment was arranged in a randomized block design with four treatments and five replicates, and eight plants per plot. The saplings produced as described before were planted in the field where the initial growth of the different combinations were evaluated. Graft success was observed for the control (common guava and for accessions 115 and 117 of cattley guava plants, with success rates of 63, 32 and 29%, respectively. In the field, the cattley guava used as rootstocks hampered Paluma canopy development and caused death of plants. Incompatibility of P. cattleyanumas rootstocks for P. guajavaPaluma was confirmed one year after cultivation in field.

  5. Biological Control of Meloidogyne hapla Using an Antagonistic Bacterium

    Directory of Open Access Journals (Sweden)

    Jiyeong Park

    2014-09-01

    Full Text Available We examined the efficacy of a bacterium for biocontrol of the root-knot nematode (RKN Meloidogyne hapla in carrot (Daucus carota subsp. sativus and tomato (Solanum lycopersicum. Among 542 bacterial isolates from various soils and plants, the highest nematode mortality was observed for treatments with isolate C1-7, which was identified as Bacillus cereus based on cultural and morphological characteristics, the Biolog program, and 16S rRNA sequencing analyses. The population density and the nematicidal activity of B. cereus C1-7 remained high until the end of culture in brain heart infusion broth, suggesting that it may have sustainable biocontrol potential. In pot experiments, the biocontrol efficacy of B. cereus C1-7 was high, showing complete inhibition of root gall or egg mass formation by RKN in carrot and tomato plants, and subsequently reducing RKN damage and suppressing nematode population growth, respectively. Light microscopy of RKN-infected carrot root tissues treated with C1-7 showed reduced formation of gall cells and fully developed giant cells, while extensive gall cells and fully mature giant cells with prominent cell wall ingrowths formed in the untreated control plants infected with RKNs. These histopathological characteristics may be the result of residual or systemic biocontrol activity of the bacterium, which may coincide with the biocontrol efficacies of nematodes in pots. These results suggest that B. cereus C1-7 can be used as a biocontrol agent for M. hapla.

  6. Human astrocytes: secretome profiles of cytokines and chemokines.

    Directory of Open Access Journals (Sweden)

    Sung S Choi

    Full Text Available Astrocytes play a key role in maintenance of neuronal functions in the central nervous system by producing various cytokines, chemokines, and growth factors, which act as a molecular coordinator of neuron-glia communication. At the site of neuroinflammation, astrocyte-derived cytokines and chemokines play both neuroprotective and neurotoxic roles in brain lesions of human neurological diseases. At present, the comprehensive profile of human astrocyte-derived cytokines and chemokines during inflammation remains to be fully characterized. We investigated the cytokine secretome profile of highly purified human astrocytes by using a protein microarray. Non-stimulated human astrocytes in culture expressed eight cytokines, including G-CSF, GM-CSF, GROα (CXCL1, IL-6, IL-8 (CXCL8, MCP-1 (CCL2, MIF and Serpin E1. Following stimulation with IL-1β and TNF-α, activated astrocytes newly produced IL-1β, IL-1ra, TNF-α, IP-10 (CXCL10, MIP-1α (CCL3 and RANTES (CCL5, in addition to the induction of sICAM-1 and complement component 5. Database search indicated that most of cytokines and chemokines produced by non-stimulated and activated astrocytes are direct targets of the transcription factor NF-kB. These results indicated that cultured human astrocytes express a distinct set of NF-kB-target cytokines and chemokines in resting and activated conditions, suggesting that the NF-kB signaling pathway differentially regulates gene expression of cytokines and chemokines in human astrocytes under physiological and inflammatory conditions.

  7. Infection related stress adaptations in the secretome and wall proteome of Candida albicans

    NARCIS (Netherlands)

    Sorgo, A.G.

    2013-01-01

    Alice Sorgo's main research question concerns the adaptability of the wall proteome and secretome of the opportunistic pathogenic fungus Candida albicans. The question is how do these subproteomes adapt to environmental stess (high temperatures, iron restriction, antifungal drugs) and how do these

  8. Human Cytomegalovirus Secretome Contains Factors That Induce Angiogenesis and Wound Healing

    Energy Technology Data Exchange (ETDEWEB)

    Dumortier, Jerome; Streblow, Daniel N.; Moses, Ashlee V.; Jacobs, Jon M.; Kreklywich, Craig N.; Camp, David G.; Smith, Richard D.; Orloff, Susan L.; Nelson, Jay

    2008-07-01

    Human cytomegalovirus (HCMV) is implicated in the acceleration of a number of vascular diseases including transplant vascular sclerosis (TVS), the lesion associated with chronic rejection (CR) of solid organ transplants. Although the virus persists in the allograft throughout the course of disease, few cells are directly infected by CMV. This observation is in contrast to the global effects that CMV has on the acceleration of TVS/CR, suggesting that CMV infection indirectly promotes the vascular disease process. Recent transcriptome analysis of CMV-infected heart allografts indicates that the virus induces cytokines and growth factors associated with angiogenesis (AG) and wound healing (WH), suggesting that CMV may accelerate TVS/CR through the induction and secretion of AG/WH factors from infected cells. We analyzed virus-free supernatants from HCMV-infected cells (HCMV secretomes) for growth factors, by mass spectrometry and immunoassays, and found that the HCMV secretome contains over 1,000 cellular proteins, many of which are involved in AG/WH. Importantly, functional assays demonstrated that CMV but not herpes simplex virus secretomes not only induce AG/WH but also promote neovessel stabilization and endothelial cell survival for 2 weeks. These findings suggest that CMV acceleration of TVS occurs through virus-induced growth factors and cytokines in the CMV secretome.

  9. Fungal secretomics to probe the biological functions of lytic polysaccharide monooxygenases

    DEFF Research Database (Denmark)

    Berrin, Jean-Guy; Rosso, Marie-Noëlle; Abou Hachem, Maher

    2017-01-01

    to starch, the main carbon storage reservoir. In this review, we focus on the identification of lytic polysaccharide monooxygenases (LPMOs) and their redox partners in fungal secretomes to highlight the biological functions of these remarkable enzyme systems and we discuss future trends related to LPMO...

  10. Secretomes of Mycoplasma hyopneumoniae and Mycoplasma flocculare reveal differences associated to pathogenesis.

    Science.gov (United States)

    Paes, Jéssica A; Lorenzatto, Karina R; de Moraes, Sofia N; Moura, Hercules; Barr, John R; Ferreira, Henrique B

    2017-02-10

    Mycoplasma hyopneumoniae and Mycoplasma flocculare cohabit the porcine respiratory tract. However, M. hyopneumoniae causes the porcine enzootic pneumonia, while M. flocculare is a commensal bacterium. Comparative analyses demonstrated high similarity between these species, which includes the sharing of all predicted virulence factors. Nevertheless, studies related to soluble secretomes of mycoplasmas were little known, although they are important for bacterial-host interactions. The aim of this study was to perform a comparative analysis between the soluble secreted proteins repertoires of the pathogenic Mycoplasma hyopneumoniae and its closely related commensal Mycoplasma flocculare. For that, bacteria were cultured in medium with reduced serum concentration and secreted proteins were identified by a LC-MS/MS proteomics approach. Altogether, 62 and 26 proteins were identified as secreted by M. hyopneumoniae and M. flocculare, respectively, being just seven proteins shared between these bacteria. In M. hyopneumoniae secretome, 15 proteins described as virulence factors were found; while four putative virulence factors were identified in M. flocculare secretome. For the first time, clear differences related to virulence were found between these species, helping to elucidate the pathogenic nature of M. hyopneumoniae to swine hosts. For the first time, the secretomes of two porcine respiratory mycoplasmas, namely the pathogenic M. hyopneumoniae and the commensal M. flocculare were compared. The presented results revealed previously unknown differences between these two genetically related species, some of which are associated to the M. hyopneumoniae ability to cause porcine enzootic pneumonia. Copyright © 2016 Elsevier B.V. All rights reserved.

  11. Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium

    Science.gov (United States)

    Amber J. Vanden Wymelenberg; Jill Gaskell; Michael Mozuch; Grzegorz Sabat; John Ralph; Oleksandr Skyba; Shawn D Mansfield; Robert A. Blanchette; Diego Martinez; Igor Grigoriev; Philip J Kersten; Daniel Cullen

    2010-01-01

    Cellulose degradation by brown rot fungi, such as Postia placenta, is poorly understood relative to the phylogenetically related white rot basidiomycete, Phanerochaete chrysosporium. To elucidate the number, structure, and regulation of genes involved in lignocellulosic cell wall attack, secretome and transcriptome analyses were performed on both wood decay fungi...

  12. Investigating the secretome : Lessons about the cells that comprise the heart

    Czech Academy of Sciences Publication Activity Database

    Šťastná, Miroslava; Van Eyk, J.E.

    2012-01-01

    Roč. 5, č. 1 (2012), o8-o18 ISSN 1942-325X Institutional research plan: CEZ:AV0Z40310501 Keywords : secretomes * proteomics * cardiovascular diseases Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 6.728, year: 2012

  13. High Resolution Proteomic Analysis of the Cervical Cancer Cell Lines Secretome Documents Deregulation of Multiple Proteases.

    Science.gov (United States)

    Pappa, Kalliopi I; Kontostathi, Georgia; Makridakis, Manousos; Lygirou, Vasiliki; Zoidakis, Jerome; Daskalakis, George; Anagnou, Nicholas P

    2017-01-01

    Oncogenic infection by HPV, eventually leads to cervical carcinogenesis, associated by deregulation of specific pathways and protein expression at the intracellular and secretome level. Thus, secretome analysis can elucidate the biological mechanisms contributing to cervical cancer. In the present study we systematically analyzed its constitution in four cervical cell lines employing a highly sensitive proteomic technology coupled with bioinformatics analysis. LC/MS-MS proteomics and bioinformatics analysis were performed in the secretome of four informative cervical cell lines SiHa (HPV16 + ), HeLa (HPV18 + ), C33A (HPV - ) and HCK1T (normal). The proteomic pattern of each cancer cell line compared to HCK1T was identified and a detailed bioinformatics analysis disclosed inhibition of matrix metalloproteases in cancer cell lines. This prediction was further confirmed via zymography for MMP-2 and MMP-9, western blot analysis for ADAM10 and by MRM for TIMP1. The differential expression of important secreted proteins such as CATD, FUCA1 and SOD2 was also confirmed by western blot analysis. MRM-targeted proteomics analysis confirmed the differential expression of CATD, CATB, SOD2, QPCT and NEU1. High resolution proteomics analysis of cervical cancer secretome revealed significantly deregulated biological processes and proteins implicated in cervical carcinogenesis. Copyright© 2017, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

  14. Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.

    Science.gov (United States)

    Zeiner, Carolyn A; Purvine, Samuel O; Zink, Erika M; Paša-Tolić, Ljiljana; Chaput, Dominique L; Haridas, Sajeet; Wu, Si; LaButti, Kurt; Grigoriev, Igor V; Henrissat, Bernard; Santelli, Cara M; Hansel, Colleen M

    2016-01-01

    Fungal secretomes contain a wide range of hydrolytic and oxidative enzymes, including cellulases, hemicellulases, pectinases, and lignin-degrading accessory enzymes, that synergistically drive litter decomposition in the environment. While secretome studies of model organisms such as Phanerochaete chrysosporium and Aspergillus species have greatly expanded our knowledge of these enzymes, few have extended secretome characterization to environmental isolates or conducted side-by-side comparisons of diverse species. Thus, the mechanisms of carbon degradation by many ubiquitous soil fungi remain poorly understood. Here we use a combination of LC-MS/MS, genomic, and bioinformatic analyses to characterize and compare the protein composition of the secretomes of four recently isolated, cosmopolitan, Mn(II)-oxidizing Ascomycetes (Alternaria alternata SRC1lrK2f, Stagonospora sp. SRC1lsM3a, Pyrenochaeta sp. DS3sAY3a, and Paraconiothyrium sporulosum AP3s5-JAC2a). We demonstrate that the organisms produce a rich yet functionally similar suite of extracellular enzymes, with species-specific differences in secretome composition arising from unique amino acid sequences rather than overall protein function. Furthermore, we identify not only a wide range of carbohydrate-active enzymes that can directly oxidize recalcitrant carbon, but also an impressive suite of redox-active accessory enzymes that suggests a role for Fenton-based hydroxyl radical formation in indirect, non-specific lignocellulose attack. Our findings highlight the diverse oxidative capacity of these environmental isolates and enhance our understanding of the role of filamentous Ascomycetes in carbon turnover in the environment.

  15. Comparative Analysis of Secretome Profiles of Manganese(II-Oxidizing Ascomycete Fungi.

    Directory of Open Access Journals (Sweden)

    Carolyn A Zeiner

    Full Text Available Fungal secretomes contain a wide range of hydrolytic and oxidative enzymes, including cellulases, hemicellulases, pectinases, and lignin-degrading accessory enzymes, that synergistically drive litter decomposition in the environment. While secretome studies of model organisms such as Phanerochaete chrysosporium and Aspergillus species have greatly expanded our knowledge of these enzymes, few have extended secretome characterization to environmental isolates or conducted side-by-side comparisons of diverse species. Thus, the mechanisms of carbon degradation by many ubiquitous soil fungi remain poorly understood. Here we use a combination of LC-MS/MS, genomic, and bioinformatic analyses to characterize and compare the protein composition of the secretomes of four recently isolated, cosmopolitan, Mn(II-oxidizing Ascomycetes (Alternaria alternata SRC1lrK2f, Stagonospora sp. SRC1lsM3a, Pyrenochaeta sp. DS3sAY3a, and Paraconiothyrium sporulosum AP3s5-JAC2a. We demonstrate that the organisms produce a rich yet functionally similar suite of extracellular enzymes, with species-specific differences in secretome composition arising from unique amino acid sequences rather than overall protein function. Furthermore, we identify not only a wide range of carbohydrate-active enzymes that can directly oxidize recalcitrant carbon, but also an impressive suite of redox-active accessory enzymes that suggests a role for Fenton-based hydroxyl radical formation in indirect, non-specific lignocellulose attack. Our findings highlight the diverse oxidative capacity of these environmental isolates and enhance our understanding of the role of filamentous Ascomycetes in carbon turnover in the environment.

  16. Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

    Energy Technology Data Exchange (ETDEWEB)

    Zeiner, Carolyn A.; Purvine, Samuel O.; Zink, Erika M.; Paša-Tolić, Ljiljana; Chaput, Dominique L.; Haridas, Sajeet; Wu, Si; LaButti, Kurt; Grigoriev, Igor V.; Henrissat, Bernard; Santelli, Cara M.; Hansel, Colleen M.; Pöggeler, Stefanie

    2016-07-19

    Fungal secretomes contain a wide range of hydrolytic and oxidative enzymes, including cellulases, hemicellulases, pectinases, and lignin-degrading accessory enzymes, that synergistically drive litter decomposition in the environment. While secretome studies of model organisms such as Phanerochaete chrysosporium and Aspergillus species have greatly expanded our knowledge of these enzymes, few have extended secretome characterization to environmental isolates or conducted side-by-side comparisons of diverse species. Thus, the mechanisms of carbon degradation by many ubiquitous soil fungi remain poorly understood. Here we use a combination of LC-MS/MS, genomic, and bioinformatic analyses to characterize and compare the protein composition of the secretomes of four recently isolated, cosmopolitan, Mn(II)-oxidizing Ascomycetes (Alternaria alternata SRC1lrK2f, Stagonospora sp. SRC1lsM3a, Pyrenochaeta sp. DS3sAY3a, and Paraconiothyrium sporulosum AP3s5-JAC2a). We demonstrate that the organisms produce a rich yet functionally similar suite of extracellular enzymes, with species-specific differences in secretome composition arising from unique amino acid sequences rather than overall protein function. Furthermore, we identify not only a wide range of carbohydrate-active enzymes that can directly oxidize recalcitrant carbon, but also an impressive suite of redox-active accessory enzymes that suggests a role for Fenton-based hydroxyl radical formation in indirect, non-specific lignocellulose attack. Our findings highlight the diverse oxidative capacity of these environmental isolates and enhance our understanding of the role of filamentous Ascomycetes in carbon turnover in the environment.

  17. Proteomic Profile of Unstable Atheroma Plaque: Increased Neutrophil Defensin 1, Clusterin, and Apolipoprotein E Levels in Carotid Secretome.

    Science.gov (United States)

    Aragonès, Gemma; Auguet, Teresa; Guiu-Jurado, Esther; Berlanga, Alba; Curriu, Marta; Martinez, Salomé; Alibalic, Ajla; Aguilar, Carmen; Hernández, Esteban; Camara, María-Luisa; Canela, Núria; Herrero, Pol; Ruyra, Xavier; Martín-Paredero, Vicente; Richart, Cristóbal

    2016-03-04

    Because of the clinical significance of carotid atherosclerosis, the search for novel biomarkers has become a priority. The aim of the present study was to compare the protein secretion profile of the carotid atherosclerotic plaque (CAP, n = 12) and nonatherosclerotic mammary artery (MA, n = 10) secretomes. We used a nontargeted proteomic approach that incorporated tandem immunoaffinity depletion, iTRAQ labeling, and nanoflow liquid chromatography coupled to high-resolution mass spectrometry. In total, 162 proteins were quantified, of which 25 showed statistically significant differences in secretome levels between carotid atherosclerotic plaque and nondiseased mammary artery. We found increased levels of neutrophil defensin 1, apolipoprotein E, clusterin, and zinc-alpha-2-glycoprotein in CAP secretomes. Results were validated by ELISA assays. Also, differentially secreted proteins are involved in pathways such as focal adhesion and leukocyte transendothelial migration. In conclusion, this study provides a subset of identified proteins that are differently expressed in secretomes of clinical significance.

  18. The current landscape of the mesenchymal stromal cell secretome: A new paradigm for cell-free regeneration.

    Science.gov (United States)

    Konala, Vijay Bhaskar Reddy; Mamidi, Murali Krishna; Bhonde, Ramesh; Das, Anjan Kumar; Pochampally, Radhika; Pal, Rajarshi

    2016-01-01

    The unique properties of mesenchymal stromal/stem cells (MSCs) to self-renew and their multipotentiality have rendered them attractive to researchers and clinicians. In addition to the differentiation potential, the broad repertoire of secreted trophic factors (cytokines) exhibiting diverse functions such as immunomodulation, anti-inflammatory activity, angiogenesis and anti-apoptotic, commonly referred to as the MSC secretome, has gained immense attention in the past few years. There is enough evidence to show that the one important pathway by which MSCs participate in tissue repair and regeneration is through its secretome. Concurrently, a large body of MSC research has focused on characterization of the MSC secretome; this includes both soluble factors and factors released in extracellular vesicles, for example, exosomes and microvesicles. This review provides an overview of our current understanding of the MSC secretome with respect to their potential clinical applications. Copyright © 2015 International Society for Cellular Therapy. Published by Elsevier Inc. All rights reserved.

  19. First report of the root-knot nematode Meloidogyne marylandi on Turfgrasses in Israel

    NARCIS (Netherlands)

    Oka, Y.; Karssen, G.; Mor, M.

    2004-01-01

    In a turfgrass nursery in Arava, Israel, a population of root-knot nematodes was isolated from poorly growing Zoysiagrass (Zoysia japonica Steud.) with symptoms of foliar chlorosis and roots with very small, smooth galls and protruding egg masses. The isolated population (genus Meloidogyne) included

  20. Developmental and behavioural effects of the endophytic Fusarium moniliforme Fe14 towards Meloidogyne graminicola in rice

    NARCIS (Netherlands)

    Le, H.T.T.; Padgham, J.L.; Hagemann, M.H.; Sikora, R.A.; Schouten, Sander

    2016-01-01

    The root-knot nematode, Meloidogyne graminicola, is an important pest of rice in many rice production areas worldwide. The endophyte Fusarium moniliforme strain Fe14, isolated from a disinfected root of rice, has previously shown potential antagonistic activity against M. graminicola. This study

  1. Physiological and DNA fingerprinting of the bacterial community of Meloidogyne fallax egg masses

    NARCIS (Netherlands)

    Papert, A; Kok, CJ; van Elsas, JD

    2004-01-01

    Bacterial communities associated with the plant-parasitic nematode Meloidogyne fallax egg masses were compared with those present in the rhizoplane. Two agricultural soils with different nematode population dynamics were used in a glasshouse study, with either potato or tomato as host plant for the

  2. Relative susceptibilities of five fodder radish varieties (Raphanus sativus var. Oleiformis) to Meloidogyne chitwoodi

    NARCIS (Netherlands)

    Teklu, M.G.; Schomaker, C.H.; Been, T.H.

    2014-01-01

    The fodder radish varieties Anaconda, Contra, Defender, Doublet and Terranova, known to have some partial resistance, were compared to the standard variety, Radical, to estimate their relative susceptibility (RS) for both population dynamic parameters of Meloidogyne chitwoodi and to evaluate Pi

  3. Nematicides control rice root-knot, caused by Meloidogyne graminicola

    Directory of Open Access Journals (Sweden)

    Mujeebur Rahman KHAN

    2012-09-01

    Full Text Available Studies were conducted to determine damage potential of Meloidogyne graminicola on the commonly grown rice cv. Sugandh-5 and to devise an effective management strategy. The nematicides were applied through root-dip (200 ppm solution and soil application of 2 kg ha-1 phorate 10G (25 mg a.i./pot, carbofuran 3G (83.3 mg a.i./pot and 1 L ha-1, carbosulfan 20EC (5µL/pot and chlorpyriphos 20 EC (6.25 µL/pot in both nematode infested and non-infested soil with five modes of application viz., root-dip, single soil application (15 days after transplanting, root-dip + one soil application, two soil applications, and root-dip + two soil applications (15 and 30 days. Application of nematicides did not cause any toxicity symptoms on rice plants. In nematode infested soil, terminal and spiral galls developed on the rice roots, and plants suffered 20−31% decrease in the plant growth parameters. Carbofuran and phorate through root-dip plus single soil application provided greatest suppression in galling (16−20%, egg mass production (18−22% and soil population (27.5−58.2% of M. graminicola, and subsequently increased all the plant growth variables by 9−19%. Root-dip + two soil applications increased plant growth and suppressed nematodes, but was equal to root dip + one soil application. Root-dip treatment alone with carbosulfan also significantly suppressed root galling (10−12% and improved the dry weight of roots and shoots (7−10%.

  4. Pengendalian Nematoda Puru Akar (Meloidogyne spp. pada Buncis dengan Bakteri Pasteuria penetrans dan Solarisasi

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    B. Triman

    2001-07-01

    Full Text Available The objectives of the research were to study the effect of P. penetrans and soil solarization on the population of root-knot nematodes (Meloidogyne spp. and the effect of soil solarization on the infectivity of P. penetrans. The research was done in the field with high population of plant parasitic nematode especially root-knot nematodes. Soil solarization was done in dry season by covering the soil before french beans (buncis were planted with transparent plastic and P. penetrans were inoculated before soil solarization. Factorial design in Completely Randomized Design was used in this experiment with the following factors: 1 soil solarization (within 1, 2, and 3 moths; 2 isolates of P. penetrans (i.e. isolate 2 and 3. The research results were: 1 Isolate 2 and 3 of P. penetrans were able to parasitize root-knot nematodes in soil solarized within 1, 2, and 3 months; 2 the length of soil solarization afected the infectivity of P. penetrans on Meloidogyne spp. The percentages of Meloidogyne spp. infected with isolate 2 of P. penetrans in soil solarization within 1, 2, and 3 months were 40.3%; 25.7%, and 10.1%, respectively, whereas in soil inoculated with isolate 3 of P. penetrans were: 37.3%, 10.2%, and 2.2%, respectively; 3 inoculation of P. penetrans reduced the root damage caused by root-knot nematodes (Meloidogyne spp.; and 4 treatment of P. penetrans combined with soil solarization reduced the root damage caused by root-knot nematodes (Meloidogyne spp.. Key words: Pasteuria penetrans, soil solarization, root-knot nematode

  5. Alpha-arylphorin is a mitogen in the Heliothis virescens midgut cell secretome upon Cry1Ac intoxication

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    Anais Castagnola

    2017-10-01

    Full Text Available Insecticidal crystal (Cry proteins produced by the bacterium Bacillus thuringiensis (Bt target cells in the midgut epithelium of susceptible larvae. While the mode of action of Cry toxins has been extensively investigated, the midgut response to Cry intoxication and its regulation are not well characterized. In this work, we describe the secreted proteome (secretome of primary mature midgut cell cultures from Heliothis virescens larvae after exposure to Cry1Ac toxin compared to control buffer treatment. The Cry1Ac-induced secretome caused higher proliferation and differentiation and an overall reduction in total cell mortality over time in primary H. virescens midgut stem cell cultures when compared to treatment with control buffer secretome. Differential proteomics identified four proteins with significant differences in abundance comparing Cry1Ac-treated and control secretomes. The most significant difference detected in the Cry1Ac secretome was an arylphorin subunit alpha protein not detected in the control secretome. Feeding of purified alpha-arylphorin to H. virescens larvae resulted in midgut hyperplasia and significantly reduced susceptibility to Cry1Ac toxin compared to controls. These data identify alpha-arylphorin as a protein with a new putative role in the midgut regeneration process in response to Cry1Ac intoxication and possibly pathogen/abiotic stress, identifying alpha-arylphorin as a potential gene to target with insecticidal gene silencing for pest control.

  6. Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets

    Science.gov (United States)

    Cornejo-Granados, Fernanda; Zatarain-Barrón, Zyanya L.; Cantu-Robles, Vito A.; Mendoza-Vargas, Alfredo; Molina-Romero, Camilo; Sánchez, Filiberto; Del Pozo-Yauner, Luis; Hernández-Pando, Rogelio; Ochoa-Leyva, Adrián

    2017-01-01

    The Excreted/Secreted (ES) proteins play important roles during Mycobacterium tuberculosis invasion, virulence, and survival inside the host and they are a major source of immunogenic proteins. However, the molecular complexity of the bacillus cell wall has made difficult the experimental isolation of the total bacterial ES proteins. Here, we reported the genomes of two Beijing genotype M. tuberculosis clinical isolates obtained from patients from Vietnam (isolate 46) and South Africa (isolate 48). We developed a bioinformatics pipeline to predict their secretomes and observed that ~12% of the genome-encoded proteins are ES, being PE, PE-PGRS, and PPE the most abundant protein domains. Additionally, the Gene Ontology, KEGG pathways and Enzyme Classes annotations supported the expected functions for the secretomes. The ~70% of an experimental secretome compiled from literature was contained in our predicted secretomes, while only the 34–41% of the experimental secretome was contained in the two previously reported secretomes for H37Rv. These results suggest that our bioinformatics pipeline is better to predict a more complete set of ES proteins in M. tuberculosis genomes. The predicted ES proteins showed a significant higher antigenic density measured by Abundance of Antigenic Regions (AAR) value than the non-ES proteins and also compared to random constructed secretomes. Additionally, we predicted the secretomes for H37Rv, H37Ra, and two M. bovis BCG genomes. The antigenic density for BGG and for isolates 46 and 48 was higher than the observed for H37Rv and H37Ra secretomes. In addition, two sets of immunogenic proteins previously reported in patients with tuberculosis also showed a high antigenic density. Interestingly, mice infected with isolate 46 showed a significant lower survival rate than the ones infected with isolate 48 and both survival rates were lower than the one previously reported for the H37Rv in the same murine model. Finally, after a

  7. Stem cell secretome-rich nanoclay hydrogel: a dual action therapy for cardiovascular regeneration

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    Waters, Renae; Pacelli, Settimio; Maloney, Ryan; Medhi, Indrani; Ahmed, Rafeeq P. H.; Paul, Arghya

    2016-03-01

    A nanocomposite hydrogel with photocrosslinkable micro-porous networks and a nanoclay component was successfully prepared to control the release of growth factor-rich stem cell secretome. The proven pro-angiogenic and cardioprotective potential of this new bioactive system provides a valuable therapeutic platform for cardiac tissue repair and regeneration.A nanocomposite hydrogel with photocrosslinkable micro-porous networks and a nanoclay component was successfully prepared to control the release of growth factor-rich stem cell secretome. The proven pro-angiogenic and cardioprotective potential of this new bioactive system provides a valuable therapeutic platform for cardiac tissue repair and regeneration. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr07806g

  8. Secretome data from Trichoderma reesei and Aspergillus niger cultivated in submerged and sequential fermentation methods

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    Camila Florencio

    2016-09-01

    Full Text Available The cultivation procedure and the fungal strain applied for enzyme production may influence levels and profile of the proteins produced. The proteomic analysis data presented here provide critical information to compare proteins secreted by Trichoderma reesei and Aspergillus niger when cultivated through submerged and sequential fermentation processes, using steam-explosion sugarcane bagasse as inducer for enzyme production. The proteins were organized according to the families described in CAZy database as cellulases, hemicellulases, proteases/peptidases, cell-wall-protein, lipases, others (catalase, esterase, etc., glycoside hydrolases families, predicted and hypothetical proteins. Further detailed analysis of this data is provided in “Secretome analysis of Trichoderma reesei and Aspergillus niger cultivated by submerged and sequential fermentation process: enzyme production for sugarcane bagasse hydrolysis” C. Florencio, F.M. Cunha, A.C Badino, C.S. Farinas, E. Ximenes, M.R. Ladisch (2016 [1]. Keywords: Tricoderma reesei, Aspergillus Niger, Enzyme Production, Secretome

  9. Secretome analysis to elucidate metalloprotease-dependent ectodomain shedding of glycoproteins during neuronal differentiation.

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    Tsumagari, Kazuya; Shirakabe, Kyoko; Ogura, Mayu; Sato, Fuminori; Ishihama, Yasushi; Sehara-Fujisawa, Atsuko

    2017-02-01

    Many membrane proteins are subjected to limited proteolyses at their juxtamembrane regions, processes referred to as ectodomain shedding. Shedding ectodomains of membrane-bound ligands results in activation of downstream signaling pathways, whereas shedding those of cell adhesion molecules causes loss of cell-cell contacts. Secreted proteomics (secretomics) using high-resolution mass spectrometry would be strong tools for both comprehensive identification and quantitative measurement of membrane proteins that undergo ectodomain shedding. In this study, to elucidate the ectodomain shedding events that occur during neuronal differentiation, we establish a strategy for quantitative secretomics of glycoproteins released from differentiating neuroblastoma cells into culture medium with or without GM6001, a broad-spectrum metalloprotease inhibitor. Considering that most of transmembrane and secreted proteins are N-glycosylated, we include a process of N-glycosylated peptides enrichment as well as isotope tagging in our secretomics workflow. Our results show that differentiating N1E-115 neurons secrete numerous glycosylated polypeptides in metalloprotease-dependent manners. They are derived from cell adhesion molecules such as NCAM1, CADM1, L1CAM, various transporters and receptor proteins. These results show the landscape of ectodomain shedding and other secretory events in differentiating neurons and/or during axon elongation, which should help elucidate the mechanism of neurogenesis and the pathogenesis of neurological disorders. © 2017 Molecular Biology Society of Japan and John Wiley & Sons Australia, Ltd.

  10. Comparative analysis of the in vitro and in planta secretomes from Mycosphaerella fijiensis isolates.

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    Escobar-Tovar, Lina; Guzmán-Quesada, Mauricio; Sandoval-Fernández, Jorge A; Gómez-Lim, Miguel A

    2015-06-01

    Black Sigatoka, a devastating disease of bananas and plantains worldwide, is caused by the fungus Mycosphaerella fijiensis. Several banana cultivars such as 'Yangambi Km 5' and Calcutta IV, have been known to be resistant to the fungus, but the resistance has been broken in 'Yangambi Km 5' in Costa Rica. Since the resistance of this variety still persists in Mexico, the aim of this study was to compare the in vitro and in planta secretomes from two avirulent and virulent M. fijiensis isolates using proteomics and bioinformatics approaches. We aimed to identify differentially expressed proteins in fungal isolates that differ in pathogenicity and that might be responsible for breaking the resistance in 'Yangambi Km 5'. We were able to identify 90 protein spots in the secretomes of fungal isolates encoding 42 unique proteins and 35 differential spots between them. Proteins involved in carbohydrate transport and metabolism were more prevalent. Several proteases, pathogenicity-related, ROS detoxification and unknown proteins were also highly or specifically expressed by the virulent isolate in vitro or during in planta infection. An unknown protein representing a virulence factor candidate was also identified. These results demonstrated that the secretome reflects major differences between both M. fijiensis isolates. Copyright © 2015 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  11. Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process.

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    de Torre-Minguela, Carlos; Barberà-Cremades, Maria; Gómez, Ana I; Martín-Sánchez, Fátima; Pelegrín, Pablo

    2016-03-03

    The activation of P2X7 receptor (P2X7R) on M1 polarized macrophages induces the assembly of the NLRP3 inflammasome leading to the release of pro-inflammatory cytokines and the establishment of the inflammatory response. However, P2X7R signaling to the NLRP3 inflammasome is uncoupled on M2 macrophages without changes on receptor activation. In this study, we analyzed P2X7R secretome in wild-type and P2X7R-deficient macrophages polarized either to M1 or M2 and proved that proteins released after P2X7R stimulation goes beyond caspase-1 secretome. The characterization of P2X7R-secretome reveals a new function of this receptor through a fine-tuning of protein release. We found that P2X7R stimulation in macrophages is able to release potent anti-inflammatory proteins, such as Annexin A1, independently of their polarization state suggesting for first time a potential role for P2X7R during resolution of the inflammation and not linked to the release of pro-inflammatory cytokines. These results are of prime importance for the development of therapeutics targeting P2X7R.

  12. The Diacetyl-Exposed Human Airway Epithelial Secretome: New Insights into Flavoring-Induced Airways Disease.

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    Brass, David M; Gwinn, William M; Valente, Ashlee M; Kelly, Francine L; Brinkley, Christie D; Nagler, Andrew E; Moseley, M Arthur; Morgan, Daniel L; Palmer, Scott M; Foster, Matthew W

    2017-06-01

    Bronchiolitis obliterans (BO) is an increasingly important lung disease characterized by fibroproliferative airway lesions and decrements in lung function. Occupational exposure to the artificial food flavoring ingredient diacetyl, commonly used to impart a buttery flavor to microwave popcorn, has been associated with BO development. In the occupational setting, diacetyl vapor is first encountered by the airway epithelium. To better understand the effects of diacetyl vapor on the airway epithelium, we used an unbiased proteomic approach to characterize both the apical and basolateral secretomes of air-liquid interface cultures of primary human airway epithelial cells from four unique donors after exposure to an occupationally relevant concentration (∼1,100 ppm) of diacetyl vapor or phosphate-buffered saline as a control on alternating days. Basolateral and apical supernatants collected 48 h after the third exposure were analyzed using one-dimensional liquid chromatography tandem mass spectrometry. Paired t tests adjusted for multiple comparisons were used to assess differential expression between diacetyl and phosphate-buffered saline exposure. Of the significantly differentially expressed proteins identified, 61 were unique to the apical secretome, 81 were unique to the basolateral secretome, and 11 were present in both. Pathway enrichment analysis using publicly available databases revealed that proteins associated with matrix remodeling, including degradation, assembly, and new matrix organization, were overrepresented in the data sets. Similarly, protein modifiers of epidermal growth factor receptor signaling were significantly altered. The ordered changes in protein expression suggest that the airway epithelial response to diacetyl may contribute to BO pathogenesis.

  13. Composition of the Schistosoma mansoni worm secretome: Identification of immune modulatory Cyclophilin A.

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    Achilleas Floudas

    2017-10-01

    Full Text Available The helminth Schistosoma mansoni modulates the infected host's immune system to facilitate its own survival, by producing excretory/secretory molecules that interact with a variety of the host's cell types including those of the immune system. Herein, we characterise the S. mansoni adult male worm secretome and identify 111 proteins, including 7 vaccine candidates and several molecules with potential immunomodulatory activity. Amongst the molecules present in the secretome, a 17-19kDa protein analogous to human cyclophilin A was identified. Given the ability of cyclophilin A to modulate the immune system by regulating antigen presenting cell activity, we sought to determine whether recombinant S. mansoni Cyclophilin A (rSmCypA is capable of modulating bone-marrow derived dendritic cell (BMDC and T cell responses under in vitro conditions. rSmCypA was enzymatically active and able to alter the pro-inflammatory cytokine profile of LPS-activated dendritic cells. rSmCypA also modulated DC function in the induction of CD4+ T cell proliferation with a preferential expansion of Treg cells. This work demonstrates the unique protein composition of the S. mansoni male worm secretome and immunomodulatory activity of S. mansoni Cyclophilin A.

  14. Mesenchymal Stem Cell Secretome: Toward Cell-Free Therapeutic Strategies in Regenerative Medicine.

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    Vizoso, Francisco J; Eiro, Noemi; Cid, Sandra; Schneider, Jose; Perez-Fernandez, Roman

    2017-08-25

    Earlier research primarily attributed the effects of mesenchymal stem cell (MSC) therapies to their capacity for local engrafting and differentiating into multiple tissue types. However, recent studies have revealed that implanted cells do not survive for long, and that the benefits of MSC therapy could be due to the vast array of bioactive factors they produce, which play an important role in the regulation of key biologic processes. Secretome derivatives, such as conditioned media or exosomes, may present considerable advantages over cells for manufacturing, storage, handling, product shelf life and their potential as a ready-to-go biologic product. Nevertheless, regulatory requirements for manufacturing and quality control will be necessary to establish the safety and efficacy profile of these products. Among MSCs, human uterine cervical stem cells (hUCESCs) may be a good candidate for obtaining secretome-derived products. hUCESCs are obtained by Pap cervical smear, which is a less invasive and painful method than those used for obtaining other MSCs (for example, from bone marrow or adipose tissue). Moreover, due to easy isolation and a high proliferative rate, it is possible to obtain large amounts of hUCESCs or secretome-derived products for research and clinical use.

  15. Controlled Inhibition of the Mesenchymal Stromal Cell Pro-inflammatory Secretome via Microparticle Engineering

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    Sudhir H. Ranganath

    2016-06-01

    Full Text Available Mesenchymal stromal cells (MSCs are promising therapeutic candidates given their potent immunomodulatory and anti-inflammatory secretome. However, controlling the MSC secretome post-transplantation is considered a major challenge that hinders their clinical efficacy. To address this, we used a microparticle-based engineering approach to non-genetically modulate pro-inflammatory pathways in human MSCs (hMSCs under simulated inflammatory conditions. Here we show that microparticles loaded with TPCA-1, a small-molecule NF-κB inhibitor, when delivered to hMSCs can attenuate secretion of pro-inflammatory factors for at least 6 days in vitro. Conditioned medium (CM derived from TPCA-1-loaded hMSCs also showed reduced ability to attract human monocytes and prevented differentiation of human cardiac fibroblasts to myofibroblasts, compared with CM from untreated or TPCA-1-preconditioned hMSCs. Thus, we provide a broadly applicable bioengineering solution to facilitate intracellular sustained release of agents that modulate signaling. We propose that this approach could be harnessed to improve control over MSC secretome post-transplantation, especially to prevent adverse remodeling post-myocardial infarction.

  16. Three-Dimensional Bioprinting Nanotechnologies towards Clinical Application of Stem Cells and Their Secretome in Salivary Gland Regeneration

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    Joao N. Ferreira

    2016-01-01

    Full Text Available Salivary gland (SG functional damage and severe dry mouth (or xerostomia are commonly observed in a wide range of medical conditions from autoimmune to metabolic disorders as well as after radiotherapy to treat specific head and neck cancers. No effective therapy has been developed to completely restore the SG functional damage on the long-term and reverse the poor quality of life of xerostomia patients. Cell- and secretome-based strategies are currently being tested in vitro and in vivo for the repair and/or regeneration of the damaged SG using (1 epithelial SG stem/progenitor cells from salispheres or explant cultures as well as (2 nonepithelial stem cell types and/or their bioactive secretome. These strategies will be the focus of our review. Herein, innovative 3D bioprinting nanotechnologies for the generation of organotypic cultures and SG organoids/mini-glands will also be discussed. These bioprinting technologies will allow researchers to analyze the secretome components and extracellular matrix production, as well as their biofunctional effects in 3D mini-glands ex vivo. Improving our understanding of the SG secretome is critical to develop effective secretome-based therapies towards the regeneration and/or repair of all SG compartments for proper restoration of saliva secretion and flow into the oral cavity.

  17. An Interspecies Comparative Analysis of the Predicted Secretomes of the Necrotrophic Plant Pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

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    Heard, Steph; Brown, Neil A; Hammond-Kosack, Kim

    2015-01-01

    Phytopathogenic fungi form intimate associations with host plant species and cause disease. To be successful, fungal pathogens communicate with a susceptible host through the secretion of proteinaceous effectors, hydrolytic enzymes and metabolites. Sclerotinia sclerotiorum and Botrytis cinerea are economically important necrotrophic fungal pathogens that cause disease on numerous crop species. Here, a powerful bioinformatics pipeline was used to predict the refined S. sclerotiorum and B. cinerea secretomes, identifying 432 and 499 proteins respectively. Analyses focusing on S. sclerotiorum revealed that 16% of the secretome encoding genes resided in small, sequence heterogeneous, gene clusters that were distributed over 13 of the 16 predicted chromosomes. Functional analyses highlighted the importance of plant cell hydrolysis, oxidation-reduction processes and the redox state to the S. sclerotiorum and B. cinerea secretomes and potentially host infection. Only 8% of the predicted proteins were distinct between the two secretomes. In contrast to S. sclerotiorum, the B. cinerea secretome lacked CFEM- or LysM-containing proteins. The 115 fungal and oomycete genome comparison identified 30 proteins specific to S. sclerotiorum and B. cinerea, plus 11 proteins specific to S. sclerotiorum and 32 proteins specific to B. cinerea. Expressed sequence tag (EST) and proteomic analyses showed that 246 S. sclerotiorum secretome encoding genes had EST support, including 101 which were only expressed in vitro and 49 which were only expressed in planta, whilst 42 predicted proteins were experimentally proven to be secreted. These detailed in silico analyses of two important necrotrophic pathogens will permit informed choices to be made when candidate effector proteins are selected for function analyses in planta.

  18. The Ewing sarcoma secretome and its response to activation of Wnt/beta-catenin signaling.

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    Hawkins, Allegra G; Basrur, Venkatesha; da Veiga Leprevost, Felipe; Pedersen, Elisabeth; Sperring, Colin; Nesvizhskii, Alexey I; Lawlor, Elizabeth R

    2018-01-31

    Tumor: tumor microenvironment (TME) interactions are critical for tumor progression and the composition and structure of the local extracellular matrix (ECM) are key determinants of tumor metastasis. We recently reported that activation of Wnt/beta-catenin signaling in Ewing sarcoma cells induces widespread transcriptional changes that are associated with acquisition of a metastatic tumor phenotype. Significantly, ECM protein-encoding genes were found to be enriched among Wnt/beta-catenin induced transcripts, leading us to hypothesize that activation of canonical Wnt signaling might induce changes in the Ewing sarcoma secretome. To address this hypothesis, conditioned media from Ewing sarcoma cell lines cultured in the presence or absence of Wnt3a was collected for proteomic analysis. Label-free mass spectrometry was used to identify and quantify differentially secreted proteins. We then used in silico databases to identify only proteins annotated as secreted. Comparison of the secretomes of two Ewing sarcoma cell lines revealed numerous shared proteins, as well as a degree of heterogeneity, in both basal and Wnt-stimulated conditions. Gene set enrichment analysis of secreted proteins revealed that Wnt stimulation reproducibly resulted in increased secretion of proteins involved in ECM organization, ECM receptor interactions, and collagen formation. In particular, Wnt-stimulated Ewing sarcoma cells upregulated secretion of structural collagens, as well as matricellular proteins, such as the metastasis-associated protein, tenascin C (TNC). Interrogation of published databases confirmed reproducible correlations between Wnt/beta-catenin activation and TNC and COL1A1 expression in patient tumors. In summary, this first study of the Ewing sarcoma secretome reveals that Wnt/beta-catenin activated tumor cells upregulate secretion of ECM proteins. Such Wnt/beta-catenin mediated changes are likely to impact on tumor: TME interactions that contribute to metastatic

  19. Defining the predicted protein secretome of the fungal wheat leaf pathogen Mycosphaerella graminicola.

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    Alexandre Morais do Amaral

    Full Text Available The Dothideomycete fungus Mycosphaerella graminicola is the causal agent of Septoria tritici blotch, a devastating disease of wheat leaves that causes dramatic decreases in yield. Infection involves an initial extended period of symptomless intercellular colonisation prior to the development of visible necrotic disease lesions. Previous functional genomics and gene expression profiling studies have implicated the production of secreted virulence effector proteins as key facilitators of the initial symptomless growth phase. In order to identify additional candidate virulence effectors, we re-analysed and catalogued the predicted protein secretome of M. graminicola isolate IPO323, which is currently regarded as the reference strain for this species. We combined several bioinformatic approaches in order to increase the probability of identifying truly secreted proteins with either a predicted enzymatic function or an as yet unknown function. An initial secretome of 970 proteins was predicted, whilst further stringent selection criteria predicted 492 proteins. Of these, 321 possess some functional annotation, the composition of which may reflect the strictly intercellular growth habit of this pathogen, leaving 171 with no functional annotation. This analysis identified a protein family encoding secreted peroxidases/chloroperoxidases (PF01328 which is expanded within all members of the family Mycosphaerellaceae. Further analyses were done on the non-annotated proteins for size and cysteine content (effector protein hallmarks, and then by studying the distribution of homologues in 17 other sequenced Dothideomycete fungi within an overall total of 91 predicted proteomes from fungal, oomycete and nematode species. This detailed M. graminicola secretome analysis provides the basis for further functional and comparative genomics studies.

  20. An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

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    Martens-Uzunova Elena S

    2010-10-01

    Full Text Available Abstract Background The ecological niche occupied by a fungal species, its pathogenicity and its usefulness as a microbial cell factory to a large degree depends on its secretome. Protein secretion usually requires the presence of a N-terminal signal peptide (SP and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. However, prediction of a SP does not guarantee that the protein is actually secreted and current in silico prediction methods suffer from gene-model errors introduced during genome annotation. Results A majority rule based classifier that also evaluates signal peptide predictions from the best homologs of three neighbouring Aspergillus species was developed to create an improved list of potential signal peptide containing proteins encoded by the Aspergillus niger genome. As a complement to these in silico predictions, the secretome associated with growth and upon carbon source depletion was determined using a shotgun proteomics approach. Overall, some 200 proteins with a predicted signal peptide were identified to be secreted proteins. Concordant changes in the secretome state were observed as a response to changes in growth/culture conditions. Additionally, two proteins secreted via a non-classical route operating in A. niger were identified. Conclusions We were able to improve the in silico inventory of A. niger secretory proteins by combining different gene-model predictions from neighbouring Aspergilli and thereby avoiding prediction conflicts associated with inaccurate gene-models. The expected accuracy of signal peptide prediction for proteins that lack homologous sequences in the proteomes of related species is 85%. An experimental validation of the predicted proteome confirmed in silico predictions.

  1. Bacillus anthracis secretome time course under host-simulated conditions and identification of immunogenic proteins

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    Whittington Jessica

    2007-07-01

    Full Text Available Abstract Background The secretion time course of Bacillus anthracis strain RA3R (pXO1+/pXO2- during early, mid, and late log phase were investigated under conditions that simulate those encountered in the host. All of the identified proteins were analyzed by different software algorithms to characterize their predicted mode of secretion and cellular localization. In addition, immunogenic proteins were identified using sera from humans with cutaneous anthrax. Results A total of 275 extracellular proteins were identified by a combination of LC MS/MS and MALDI-TOF MS. All of the identified proteins were analyzed by SignalP, SecretomeP, PSORT, LipoP, TMHMM, and PROSITE to characterize their predicted mode of secretion, cellular localization, and protein domains. Fifty-three proteins were predicted by SignalP to harbor the cleavable N-terminal signal peptides and were therefore secreted via the classical Sec pathway. Twenty-three proteins were predicted by SecretomeP for secretion by the alternative Sec pathway characterized by the lack of typical export signal. In contrast to SignalP and SecretomeP predictions, PSORT predicted 171 extracellular proteins, 7 cell wall-associated proteins, and 6 cytoplasmic proteins. Moreover, 51 proteins were predicted by LipoP to contain putative Sec signal peptides (38 have SpI sites, lipoprotein signal peptides (13 have SpII sites, and N-terminal membrane helices (9 have transmembrane helices. The TMHMM algorithm predicted 25 membrane-associated proteins with one to ten transmembrane helices. Immunogenic proteins were also identified using sera from patients who have recovered from anthrax. The charge variants (83 and 63 kDa of protective antigen (PA were the most immunodominant secreted antigens, followed by charge variants of enolase and transketolase. Conclusion This is the first description of the time course of protein secretion for the pathogen Bacillus anthracis. Time course studies of protein secretion and

  2. Secretome-based Manganese(II) Oxidation by Filamentous Ascomycete Fungi

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    Zeiner, C. A.; Purvine, S.; Zink, E.; Paša-Tolić, L.; Chaput, D.; Wu, S.; Santelli, C. M.; Hansel, C. M.

    2017-12-01

    Manganese (Mn) oxides are among the strongest oxidants in the environment, and Mn(II) oxidation to Mn(III/IV) (hydr)oxides includes both abiotic and microbially-mediated processes. While white-rot Basidiomycete fungi oxidize Mn(II) using laccases and Mn peroxidases in association with lignocellulose degradation, the mechanisms by which filamentous Ascomycete fungi oxidize Mn(II) and a physiological role for Mn(II) oxidation in these organisms remain poorly understood. Through a combination of chemical and in-gel assays, bulk mass spectrometry, and iTRAQ proteomics, we demonstrate enzymatic Mn(II) oxidation in the secretomes of three phylogenetically diverse Ascomycetes that were isolated from Mn-laden sediments. Candidate Mn(II)-oxidizing enzymes were species-specific and included bilirubin oxidase and tyrosinase in Stagonospora sp. SRC1lsM3a, GMC oxidoreductase in Paraconiothyrium sporulosum AP3s5-JAC2a, and FAD-binding oxidoreductases in Pyrenochaeta sp. DS3sAY3a. These findings were supported by full proteomic characterization of the secretomes, which revealed a lack of Mn, lignin, and versatile peroxidases in these Ascomycetes but a substantially higher proportion of LMCOs and GMC oxidoreductases compared to wood-rot Basidiomycetes. We also identified the potential for indirect enzymatic Mn(II) oxidation by hydroxyl radical, as the secretomes were rich in diverse lignocellulose-degrading enzymes that could participate in Fenton chemistry. A link between Mn(II) oxidation and carbon oxidation analogous to white-rot Basidiomycetes remains unknown in these Ascomycetes. Interestingly, growth rates on rich medium were unaffected by the presence of Mn(II), and the production of Mn(II)-oxidizing proteins in the secretome was constitutive and not inducible by Mn(II). Thus, no physiological benefit of Mn(II) oxidation in these Ascomycetes has yet been identified, and Mn(II) oxidation appears to be a side reaction. Future work will explore the lignin-degrading capacity of

  3. The Phanerochaete chrysosporium secretome : database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium

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    Amber J. Vanden Wymelenberg; Grzegorz Sabat; Diego Martinez; Alex S. Rajangam; Tuula T. Teeri; Jill A. Gaskell; Philip J. Kersten; Daniel Cullen

    2005-01-01

    The white rot basidiomycete, Phanerochaete chrysosporium, employs an array of extracellular enzymes to completely degrade the major polymers of wood : cellulose, hemicellulose and lignin. Towards the identification of participating enzymes, 268 likely secreted proteins were predicted using SignalP and TargetP algorithms. To assess the reliability of secretome...

  4. Control of Secreted Protein Gene Expression and the Mammalian Secretome by the Metabolic Regulator PGC-1α.

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    Minsky, Neri; Roeder, Robert G

    2017-01-06

    Secreted proteins serve pivotal roles in the development of multicellular organisms, acting as structural matrix, extracellular enzymes, and signal molecules. However, how the secretome is regulated remains incompletely understood. Here we demonstrate, unexpectedly, that peroxisome proliferator-activated receptor γ coactivator 1-α (PGC-1α), a critical transcriptional co-activator of metabolic gene expression, functions to down-regulate the expression of diverse genes encoding secreted molecules and extracellular matrix components to modulate the secretome. Using cell lines, primary cells, and mice, we show that both endogenous and exogenous PGC-1α down-regulate the expression of numerous genes encoding secreted molecules. Mechanistically, results obtained using mRNA stability measurements as well as intronic RNA expression analysis are consistent with a transcriptional effect of PGC-1α on the expression of genes encoding secreted proteins. Interestingly, PGC-1α requires the central heat shock response regulator heat shock factor protein 1 (HSF1) to affect some of its targets, and both factors co-reside on several target genes encoding secreted molecules in cells. Finally, using a mass spectrometric analysis of secreted proteins, we demonstrate that PGC-1α modulates the secretome of mouse embryonic fibroblasts. Our results define a link between a key pathway controlling metabolic regulation and the regulation of the mammalian secretome. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  5. High and Low Doses of Ionizing Radiation Induce Different Secretome Profiles in a Human Skin Model

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Qibin; Matzke, Melissa M.; Schepmoes, Athena A.; Moore, Ronald J.; Webb-Robertson, Bobbie-Jo M.; Hu, Zeping; Monroe, Matthew E.; Qian, Weijun; Smith, Richard D.; Morgan, William F.

    2014-03-18

    It is postulated that secreted soluble factors are important contributors of bystander effect and adaptive responses observed in low dose ionizing radiation. Using multidimensional liquid chromatography-mass spectrometry based proteomics, we quantified the changes of skin tissue secretome – the proteins secreted from a full thickness, reconstituted 3-dimensional skin tissue model 48 hr after exposure to 3, 10 and 200 cGy of X-rays. Overall, 135 proteins showed statistical significant difference between the sham (0 cGy) and any of the irradiated groups (3, 10 or 200 cGy) on the basis of Dunnett adjusted t-test; among these, 97 proteins showed a trend of downregulation and 9 proteins showed a trend of upregulation with increasing radiation dose. In addition, there were 21 and 8 proteins observed to have irregular trends with the 10 cGy irradiated group either having the highest or the lowest level among all three radiated doses. Moreover, two proteins, carboxypeptidase E and ubiquitin carboxyl-terminal hydrolase isozyme L1 were sensitive to ionizing radiation, but relatively independent of radiation dose. Conversely, proteasome activator complex subunit 2 protein appeared to be sensitive to the dose of radiation, as rapid upregulation of this protein was observed when radiation doses were increased from 3, to 10 or 200 cGy. These results suggest that different mechanisms of action exist at the secretome level for low and high doses of ionizing radiation.

  6. Methodologies and perspectives of proteomics applied to filamentous fungi: from sample preparation to secretome analysis.

    Science.gov (United States)

    Bianco, Linda; Perrotta, Gaetano

    2015-03-12

    Filamentous fungi possess the extraordinary ability to digest complex biomasses and mineralize numerous xenobiotics, as consequence of their aptitude to sensing the environment and regulating their intra and extra cellular proteins, producing drastic changes in proteome and secretome composition. Recent advancement in proteomic technologies offers an exciting opportunity to reveal the fluctuations of fungal proteins and enzymes, responsible for their metabolic adaptation to a large variety of environmental conditions. Here, an overview of the most commonly used proteomic strategies will be provided; this paper will range from sample preparation to gel-free and gel-based proteomics, discussing pros and cons of each mentioned state-of-the-art technique. The main focus will be kept on filamentous fungi. Due to the biotechnological relevance of lignocellulose degrading fungi, special attention will be finally given to their extracellular proteome, or secretome. Secreted proteins and enzymes will be discussed in relation to their involvement in bio-based processes, such as biomass deconstruction and mycoremediation.

  7. Effector-mining in the poplar rust fungus Melampsora larici populina secretome

    Directory of Open Access Journals (Sweden)

    Cecile eLorrain

    2015-12-01

    Full Text Available The poplar leaf rust fungus, Melampsora larici-populina has been established as a tree-microbe interaction model. Understanding the molecular mechanisms controlling infection by pathogens appears essential for durable management of tree plantations. In biotrophic plant parasites, effectors are known to condition host cell colonization. Thus, investigation of candidate secreted effector proteins is a major goal in the poplar-poplar rust interaction. Unlike oomycetes, fungal effectors do not share conserved motifs and candidate prediction relies on a set of a priori criteria established from reported bona fide effectors. Secretome prediction, genome-wide analysis of gene families and transcriptomics of M. larici-populina have led to catalogues of more than a thousand secreted proteins. Automatized effector mining pipelines hold great promise for rapid and systematic identification and prioritization of candidate secreted effector proteins for functional characterization. In this review, we report on and discuss the current status of the poplar rust fungus secretome and prediction of candidate effectors in this species.

  8. Prediction of the in planta Phakopsora pachyrhizi secretome and potential effector families.

    Science.gov (United States)

    de Carvalho, Mayra C da C G; Costa Nascimento, Leandro; Darben, Luana M; Polizel-Podanosqui, Adriana M; Lopes-Caitar, Valéria S; Qi, Mingsheng; Rocha, Carolina S; Carazzolle, Marcelo Falsarella; Kuwahara, Márcia K; Pereira, Goncalo A G; Abdelnoor, Ricardo V; Whitham, Steven A; Marcelino-Guimarães, Francismar C

    2017-04-01

    Asian soybean rust (ASR), caused by the obligate biotrophic fungus Phakopsora pachyrhizi, can cause losses greater than 80%. Despite its economic importance, there is no soybean cultivar with durable ASR resistance. In addition, the P. pachyrhizi genome is not yet available. However, the availability of other rust genomes, as well as the development of sample enrichment strategies and bioinformatics tools, has improved our knowledge of the ASR secretome and its potential effectors. In this context, we used a combination of laser capture microdissection (LCM), RNAseq and a bioinformatics pipeline to identify a total of 36 350 P. pachyrhizi contigs expressed in planta and a predicted secretome of 851 proteins. Some of the predicted secreted proteins had characteristics of candidate effectors: small size, cysteine rich, do not contain PFAM domains (except those associated with pathogenicity) and strongly expressed in planta. A comparative analysis of the predicted secreted proteins present in Pucciniales species identified new members of soybean rust and new Pucciniales- or P. pachyrhizi-specific families (tribes). Members of some families were strongly up-regulated during early infection, starting with initial infection through haustorium formation. Effector candidates selected from two of these families were able to suppress immunity in transient assays, and were localized in the plant cytoplasm and nuclei. These experiments support our bioinformatics predictions and show that these families contain members that have functions consistent with P. pachyrhizi effectors. © 2016 BSPP AND JOHN WILEY & SONS LTD.

  9. Type 2 diabetes alters mesenchymal stem cell secretome composition and angiogenic properties.

    Science.gov (United States)

    Ribot, Jonathan; Caliaperoumal, Guavri; Paquet, Joseph; Boisson-Vidal, Catherine; Petite, Herve; Anagnostou, Fani

    2017-02-01

    This study aimed at characterizing the impact of type 2 diabetes mellitus (T2DM) on the bone marrow mesenchymal stem cell (BMMSC) secretome and angiogenic properties. BMMSCs from Zucker diabetic fatty rats (ZDF) (a T2DM model) and Zucker LEAN littermates (control) were cultured. The supernatant conditioned media (CM) from BMMSCs of diabetic and control rats were collected and analysed. Compared to results obtained using CM from LEAN-BMMSCs, the bioactive content of ZDF-BMMSC CM (i) differently affects endothelial cell (HUVEC) functions in vitro by inducing increased (3.5-fold; P CATD, FMOD LTBP1 and LTBP2, which are involved in angiogenesis and/or extracellular matrix composition. Addition of neutralizing antibodies against IGF-1, LTBP1 or LTBP2 in the CM of BMMSCs from diabetic rats decreased its stimulatory effect on HUVEC migration by approximately 60%, 40% or 40%, respectively. These results demonstrate that BMMSCs from T2DM rats have a unique secretome with distinct angiogenic properties and provide new insights into the role of BMMSCs in aberrant angiogenesis in the diabetic milieu. © 2016 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine.

  10. Secretome Identifies Tenascin-X as a Potent Marker of Ovarian Cancer

    Directory of Open Access Journals (Sweden)

    Marianne Kramer

    2015-01-01

    Full Text Available CA-125 has been a valuable marker for the follow-up of ovarian cancer patients but it is not sensitive enough to be used as diagnostic marker. We had already used secretomic methods to identify proteins differentially secreted by serous ovarian cancer cells compared to healthy ovarian cells. Here, we evaluated the secretion of these proteins by ovarian cancer cells during the follow-up of one patient. Proteins that correlated with CA-125 levels were screened using serum samples from ovarian cancer patients as well as benign and healthy controls. Tenascin-X secretion was shown to correlate with CA-125 value in the initial case study. The immunohistochemical detection of increased amount of tenascin-X in ovarian cancer tissues compared to healthy tissues confirms the potent interest in tenascin-X as marker. We then quantified the tenascin-X level in serum of patients and identified tenascin-X as potent marker for ovarian cancer, showing that secretomic analysis is suitable for the identification of protein biomarkers when combined with protein immunoassay. Using this method, we determined tenascin-X as a new potent marker for serous ovarian cancer.

  11. Sequence analysis of the D2/D3 region of the large subunit RDNA from different Meloidogyne isolates

    NARCIS (Netherlands)

    Tenente, G.C.M.V.; Ley, de P.; Ley, de I.T.; Karssen, G.; Vanfleteren, J.R.

    2004-01-01

    The phylogenetic relationships of eight Meloidogyne species and twelve isolates from Brazil and other countries were investigated using sequence data of the D2/D3 expansion segments of the large subunit of ribosomal DNA. The phylogenetic procedures used were maximum parsimony, maximum likelihood and

  12. Microflora of Meloidogyne egg masses: species composition, population density and effect on the biocontrol agent Verticillium chlamudosporium (Goddard)

    NARCIS (Netherlands)

    Kok, C.J.; Papert, A.; Hok-A-Hin, C.H.

    2001-01-01

    Egg masses of Meloidogyne fallax from tomato and potato growing in soil from a nematode suppressive and a nonsuppressive field sustained bacterial population densities two to three orders of magnitude higher than those of the rhizosphere soil. BIOLOG metabolic profiling identified 16 bacterial

  13. Tuber and root resistance of potato genotypes against Meloidogyne chitwoodi in the presence of Avena strigosa, related to tuber quality

    NARCIS (Netherlands)

    Been, Thomas H.; Molendijk, Leendert P.G.; Teklu, Misghina G.; Schomaker, Corrie H.

    2017-01-01

    Relative tuber infestation and quality of two Meloidogyne chitwoodi resistant potato genotypes, AR04-4096 and 2011M1, were compared in glasshouse experiments at initial population density (Pi) = 16 second-stage juveniles (g dry soil)−1 in the presence and absence of the bristle oat, Avena strigosa.

  14. Inhibitory effects of salicylic acid on Meloidogyne javanica reproduction in tomato plants

    Energy Technology Data Exchange (ETDEWEB)

    Moslemi, F.; Fatemy, S.; Bernard, F.

    2016-11-01

    Root-knot nematodes (Meloidogyne spp.), play a major role in loss of agricultural production. Natural substances, such as salicylic acid (SA) could possibly be involved in inducing host plant resistance against nematodes. The present study is concerned with exploring the effects of varying concentrations of SA as seed priming and soil drench on tomato growth parameters and the reproduction of the root-knot nematode Meloidogyne javanica. SA at 50 μM concentration caused only 2% of juvenile mortality under in vitro conditions. SA applied as 50 μM seed treatment caused 95% and, as a soil drench, 78% reduction in the number of egg masses that formed on tomato plants. The numbers of galls were reduced to a lesser extent. Final nematode density per gram of soil was reduced to less than 1 by the 50 μM SA seed treatment, and in other treatments decreased by between 70 and 88% compared with control plants. Our results indicate SA has potential to lower root knot nematode reproduction in tomato, and seed priming is a fairly easy method to work with. (Author)

  15. Mixtures of Olive Pomace with Different Nitrogen Sources for the Control of Meloidogyne spp. on Tomato

    Science.gov (United States)

    Rodríguez-Kábana, R.; Estaún, V.; Pinochet, J.; Marfá, O.

    1995-01-01

    The efficacy of mixtures of dry olive (Olea europea) pomace with biuret, guanidine, and melamine for control of root-knot nematodes (Meloidogyne spp.) on tomato (Lycopersicon esculentum) was studied in greenhouse experiments. Olive pomace (OP) applied pre-plant at 10 g/kg soil was phytotoxic. Mixtures of OP (10 g/kg soil) with biuret or guanidine at 200-300 mg/kg soil reduced or eliminated the phytotoxic effect, controlled root-knot nematodes, and increased soil esterase activity indicative of microbial activity. The addition of biuret or guanidine without OP to soil at rates <300 mg/kg soil did not control root-knot nematodes. Melamine applied at 100-400 mg/kg soil was phytotoxic as were mixtures of melamine with OP. Treatment of OP with anhydrous ammonia increased N content of the material. In another greenhouse experiment, NH₃-treated OP added to soil was not phytotoxic to tomato, suppressed root-knot nematodes, and increased soil esterase activity. Greenhouse and microplot experiments with OP plus chicken litter demonstrated the efficacy of these combination amendments to control root-knot nematodes and increase tomato yields in Meloidogyne-infested soil. PMID:19277325

  16. Mixtures of Olive Pomace with Different Nitrogen Sources for the Control of Meloidogyne spp. on Tomato.

    Science.gov (United States)

    Rodríguez-Kábana, R; Estaún, V; Pinochet, J; Marfá, O

    1995-12-01

    The efficacy of mixtures of dry olive (Olea europea) pomace with biuret, guanidine, and melamine for control of root-knot nematodes (Meloidogyne spp.) on tomato (Lycopersicon esculentum) was studied in greenhouse experiments. Olive pomace (OP) applied pre-plant at 10 g/kg soil was phytotoxic. Mixtures of OP (10 g/kg soil) with biuret or guanidine at 200-300 mg/kg soil reduced or eliminated the phytotoxic effect, controlled root-knot nematodes, and increased soil esterase activity indicative of microbial activity. The addition of biuret or guanidine without OP to soil at rates <300 mg/kg soil did not control root-knot nematodes. Melamine applied at 100-400 mg/kg soil was phytotoxic as were mixtures of melamine with OP. Treatment of OP with anhydrous ammonia increased N content of the material. In another greenhouse experiment, NH-treated OP added to soil was not phytotoxic to tomato, suppressed root-knot nematodes, and increased soil esterase activity. Greenhouse and microplot experiments with OP plus chicken litter demonstrated the efficacy of these combination amendments to control root-knot nematodes and increase tomato yields in Meloidogyne-infested soil.

  17. Secretome of Aggregated Embryonic Stem Cell-Derived Mesenchymal Stem Cell Modulates the Release of Inflammatory Factors in Lipopolysaccharide-Induced Peripheral Blood Mononuclear Cells

    Science.gov (United States)

    Mohammadi Ghahhari, Nastaran; Maghsood, Faezeh; Jahandideh, Saeed; Lotfinia, Majid; Lak, Shirin; Johari, Behrooz; Azarnezhad, Asaad; Kadivar, Mehdi

    2018-07-01

    Bone marrow mesenchymal stem cells (BM-MSCs) have emerged as a potential therapy for various inflammatory diseases. Because of some limitations, several recent studies have suggested the use of embryonic stem cell-derived MSCs (ESC-MSCs) as an alternative for BM-MSCs. Some of the therapeutic effects of the ESC-MSCs are related to the secretion of a broad array of cytokines and growth factors, known as secretome. Harnessing this secretome for therapeutic applications requires the optimization of production of secretary molecules. It has been shown that aggregation of MSCs into 3D spheroids, as a preconditioning strategy, can enhance immunomodulatory potential of such cells. In this study, we investigated the effect of secretome derived from human ESC-MSCs (hESC-MSCs) spheroids on secretion of IL-1β, IL-10, and tumor necrosis factor α (TNF-α) from lipopolysaccharide (LPS)-induced peripheral blood mononuclear cells (PBMCs). In the present study, after immunophenotyping and considering mesodermal differentiation of hESC-MSCs, the cells were non-adherently grown to prepare 3D aggregates, and then conditioned medium or secretome was extracted from the cultures. Afterwards, the anti-inflammatory effects of the secretome were assessed in an in vitro model of inflammation. Results from this study showed that aggregate-prepared secretome from hESC-MSCs was able to significantly decrease the secretion of TNF-α (301.7 ± 5.906, p strategy to increase immunomodulatory characteristics of hESC-MSCs.

  18. Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass.

    Directory of Open Access Journals (Sweden)

    Gustavo Pagotto Borin

    Full Text Available Our dependence on fossil fuel sources and concern about the environment has generated a worldwide interest in establishing new sources of fuel and energy. Thus, the use of ethanol as a fuel is advantageous because it is an inexhaustible energy source and has minimal environmental impact. Currently, Brazil is the world's second largest producer of ethanol, which is produced from sugarcane juice fermentation. However, several studies suggest that Brazil could double its production per hectare by using sugarcane bagasse and straw, known as second-generation (2G bioethanol. Nevertheless, the use of this biomass presents a challenge because the plant cell wall structure, which is composed of complex sugars (cellulose and hemicelluloses, must be broken down into fermentable sugar, such as glucose and xylose. To achieve this goal, several types of hydrolytic enzymes are necessary, and these enzymes represent the majority of the cost associated with 2G bioethanol processing. Reducing the cost of the saccharification process can be achieved via a comprehensive understanding of the hydrolytic mechanisms and enzyme secretion of polysaccharide-hydrolyzing microorganisms. In many natural habitats, several microorganisms degrade lignocellulosic biomass through a set of enzymes that act synergistically. In this study, two fungal species, Aspergillus niger and Trichoderma reesei, were grown on sugarcane biomass with two levels of cell wall complexity, culm in natura and pretreated bagasse. The production of enzymes related to biomass degradation was monitored using secretome analyses after 6, 12 and 24 hours. Concurrently, we analyzed the sugars in the supernatant.Analyzing the concentration of monosaccharides in the supernatant, we observed that both species are able to disassemble the polysaccharides of sugarcane cell walls since 6 hours post-inoculation. The sugars from the polysaccharides such as arabinoxylan and β-glucan (that compose the most external

  19. Proteomic analysis of mycelium and secretome of different Botrytis cinerea wild-type strains.

    Science.gov (United States)

    González-Fernández, Raquel; Aloria, Kerman; Valero-Galván, José; Redondo, Inmaculada; Arizmendi, Jesús M; Jorrín-Novo, Jesús V

    2014-01-31

    The necrotrophic fungus Botrytis cinerea is a very damaging phytopathogen of wide host range and environmental persistence. It is difficult to control because of its genetic versatility, expressed in the many phenotypical differences among isolates. The genomes of the B. cinerea B05.10 and T4 strains have been recently sequenced, becoming a model system for necrotrophic pathogens, and thus opening new alternatives for functional genomics analysis. In this work, the mycelium and secreted proteome of six wild-type strains with different host range, and grown in liquid minimal medium, have been analyzed by using complementary gel-based (1-DE and 2-DE) and gel-free/label-free (nUPLC-MS(E)) approaches. We found differences in the protein profiles among strains belonging to both the mycelium and the secretome. A total of 47 and 51 variable proteins were identified in the mycelium and the secretome, respectively. Some of them, such as malate dehydrogenase or peptidyl-prolyl cis-trans isomerase from the mycelium, and endopolygalacturonase, aspartic protease or cerato-platanin protein from the secretome have been reported as virulence factors, which are involved in host-tissue invasion, pathogenicity or fungal development. The necrotrophic fungus Botrytis cinerea is an important phytopathogen of wide host range and environmental persistence, causing substantial economic losses worldwide. In this work, the mycelium and secreted proteome of six B. cinerea wild-type strains with different host range have been analyzed by using complementary gel-based and gel-free/label-free approaches. Fungal genetic versatility was confirmed at the proteome level for both mycelium proteome and secreted proteins. A high number of hypothetical proteins with conserved domains related to toxin compounds or to unknown functions were identified, having qualitative differences among strains. The identification of hypothetical proteins suggests that the B. cinerea strains differ mostly in processes

  20. Characterization of HSP27 phosphorylation sites in human atherosclerotic plaque secretome

    DEFF Research Database (Denmark)

    Durán, Mari-Carmen; Boeri-Erba, Elisabetta; Mohammed, Shabaz

    2007-01-01

    spectrometry (MS). Among the identified proteins, two isoforms of heat shock protein 27 (HSP27), a protein recently described as a potential biomarker of atherosclerosis, were detected. However, the putative mechanisms in which HSP27 isoforms could be involved in the atherosclerotic process are unknown. Thus......, the role that phosphorylated HSP27 could play in the atherosclerotic process is actually under study. The present work shows the strategies employed to characterize the phosphorylation in the HSP27 secreted by atheroma plaque samples. The application of liquid chromatography tandem mass spectrometry (MS......-lymphocytes). These interactions can be mediated by proteins secreted from these cells, which therefore exert an important role in the atherosclerotic process. We recently described a novel strategy for the characterization of the human atherosclerotic plaque secretome, combining two-dimensional gel electrophoresis and mass...

  1. Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat

    DEFF Research Database (Denmark)

    Yang, Fen; Jensen, Jens D.; Svensson, Birte

    2012-01-01

    or wheat flour as the sole nutrient source to mimic the host–pathogen interaction. A gel‐based proteomics approach was employed to identify the proteins secreted into the culture medium. Sixty‐nine unique fungal proteins were identified in 154 protein spots, including enzymes involved in the degradation......Fusarium graminearum is a phytopathogenic fungus primarily infecting small grain cereals, including barley and wheat. Secreted enzymes play important roles in the pathogenicity of many fungi. In order to access the secretome of F. graminearum, the fungus was grown in liquid culture with barley...... of cell walls, starch and proteins. Of these proteins, 35% had not been identified in previous in planta or in vitro studies, 70% were predicted to contain signal peptides and a further 16% may be secreted in a nonclassical manner. Proteins identified in the 72 spots showing differential appearance...

  2. Effect of plant and fungous metabolites on Meloidogyne exigua Efeito de metabólitos vegetais e fúngicos sobre Meloidogyne exigua

    Directory of Open Access Journals (Sweden)

    Daniel Rufino Amaral

    2009-01-01

    Full Text Available As nematodes cause great damage to Brazilian coffee production, effective methods to control these parasites are necessary. In a previous work Allium cepa L., Cajanus cajan (L. Mill., Crotalaria juncea L., Ficus elastica Roxb., Ruta graveolens L., Stylosanthes guianensis Aubl., Leucaena leucocephala (Lam. Dewit., Brachiaria decumbens Stapf., Catharanthus roseus G. Don, Tagetes minuta L., Ricinus communis L. and Coffea arabica L. produced active substances against Meloidogyne exigua Goeldi, a nematode widely disseminated through Brazilian coffee fields. Thus, aqueous extracts of such plants, collected in a different season from that of the previous work, as well as crude metabolites produced in liquid medium by Fusarium moniliforme Shelden and Cylindrocarpon magnusianum (Sacc. Woll., were submitted to in vitro assays with M. exigua second-stage juveniles (J2. All plants and fungi produced active substances against J2. Therefore, their metabolites were applied to six-month-old coffee plants inoculated with M. exigua. After 90 days in a greenhouse, those samples obtained from A. cepa, L. leucocephala, R. graveolens and F. moniliforme inhibited the production of galls and eggs by M. exigua, demonstrating potential to control such parasite.Os nematóides acarretam grandes perdas aos produtores brasileiros de café, sendo necessário o desenvolvimento de métodos eficientes para o seu controle. Em trabalho anterior, Allium cepa L., Cajanus cajan (L. Mill., Crotalaria juncea L., Ficus elastica Roxb., Ruta graveolens L., Stylosanthes guianensis Aubl., Leucaena leucocephala (Lam. Dewit., Brachiaria decumbens Stapf., Catharanthus roseus G. Don, Tagetes minuta L., Ricinus communis L. e Coffea arabica L. produziram substâncias ativas contra o nematóide Meloidogyne exigua Goeldi, que é amplamente disseminado pelos cafezais brasileiros. Dando continuidade a esse trabalho, extratos aquosos das plantas mencionadas, coletadas em época diferente daquela

  3. Analysis of membrane proteome and secretome in cells over-expressing ADAM17 using quantitative proteomics

    Energy Technology Data Exchange (ETDEWEB)

    Kawahara, R.; Simabuco, F.M. [Laboratorio Nacional de Biociencias - LNBIO, Campinas, SP (Brazil); Yokoo, S.; Paes Leme, A.F. [Laboratorio Nacional de Luz Sincrotron (LNLS), Campinas, SP (Brazil); Sherman, N. [University of Virginia, Charlottesville, VA (United States)

    2012-07-01

    Full text: A disintegrin and metalloproteinase (ADAM) protease is involved in proteolytic ectodomain shedding of several membrane-associated proteins and modulation of key cell signaling pathways in the tumor microenvironment. In this study, we examined the effect of over-expressing the full length human ADAM17 in membrane and secreted proteins. To this end, we constructed a stable Flp-In T-RExHEK293 cells expressing ADAM17 by tetracycline induction. These cells were grown in Dulbeccos modified Eagles medium containing light lysine, arginine or heavy, L-Arg-13C615N4 and L-Lys -13C615N2 (SILAC: stable isotope labeling with amino acid in cell culture) media and they were treated with an ADAM17 activator, phorbolester (PMA). Controls such as Flp-In T-RExHEK293 cell without PMA treatment and without ADAM17 cloned were cultivated in light medium. The ADAM17 overexpression was induced with tetracycline 500 ng/ml for 24 hours. Cells in a heavy condition were treated with PMA 50 ng/ml for 1 hour and vehicle DMSO was used as control in a light cell condition. The extracellular media were collected, concentrated and used to evaluate the secretome and a cell surface biotinylation-based approach was used to capture cell surface-associated proteins. The biotinylated proteins were eluted with dithiothreitol, alkylated with iodoacetamide and then digested with trypsin. The resulting peptides were subjected to LC-MS/MS analysis on an ETD enabled Orbitrap Velos instrument. The results showed different proteins up or down regulated in membrane and secretome analysis which might represent potential molecules involved in signaling or ADAM17 regulation events. (author)

  4. Proteome and Secretome Characterization of Glioblastoma-Derived Neural Stem Cells.

    Science.gov (United States)

    Okawa, Satoshi; Gagrica, Sladjana; Blin, Carla; Ender, Christine; Pollard, Steven M; Krijgsveld, Jeroen

    2017-04-01

    Glioblastoma multiforme (GBM) (grade IV astrocytoma) is the most common and aggressive primary brain tumor. GBM consists of heterogeneous cell types including a subset of stem cell-like cells thought to sustain tumor growth. These tumor-initiating glioblastoma multiforme-derived neural stem (GNS) cells as well as their genetically normal neural stem (NS) counterparts can be propagated in culture as relatively pure populations. Here, we perform quantitative proteomics to globally characterize and compare total proteome plus the secreted proteome (secretome) between GNS cells and NS cells. Proteins and pathways that distinguish malignant cancer (GNS) stem cells from their genetically normal counterparts (NS cells) might have value as new biomarkers or therapeutic targets. Our analysis identified and quantified ∼7,500 proteins in the proteome and ∼2,000 in the secretome, 447 and 138 of which were differentially expressed, respectively. Notable tumor-associated processes identified using gene set enrichment analysis included: extracellular matrix interactions, focal adhesion, cell motility, and cell signaling. We focused on differentially expressed surface proteins, and identified 26 that participate in ligand-receptor pairs that play a prominent role in tumorigenesis. Immunocytochemistry and immunoblotting confirmed that CD9, a recently identified marker of adult subventricular zone NS cells, was consistently enriched across a larger set of primary GNS cell lines. CD9 may, therefore, have value as a GNS-specific surface marker and a candidate therapeutic target. Altogether, these findings support the notion that increased cell-matrix and cell-cell adhesion molecules play a crucial role in promoting the tumor initiating and infiltrative properties of GNS cells. Stem Cells 2017;35:967-980. © 2016 AlphaMed Press.

  5. Resolving breast cancer heterogeneity by searching reliable protein cancer biomarkers in the breast fluid secretome

    International Nuclear Information System (INIS)

    Mannello, Ferdinando; Ligi, Daniela

    2013-01-01

    One of the major goals in cancer research is to find and evaluate the early presence of biomarkers in human fluids and tissues. To resolve the complex cell heterogeneity of a tumor mass, it will be useful to characterize the intricate biomolecular composition of tumor microenvironment (the so called cancer secretome), validating secreted proteins as early biomarkers of cancer initiation and progression. This approach is not broadly applicable because of the paucity of well validated and FDA-approved biomarkers and because most of the candidate biomarkers are mainly organ-specific rather than tumor-specific. For these reasons, there is an urgent need to identify and validate a panel of biomarker combinations for early detection of human tumors. This is especially important for breast cancer, the cancer spread most worldwide among women. It is well known that patients with early diagnosed breast cancer live longer, require less extensive treatment and fare better than patients with more aggressive and/or advanced disease. In the frame of searching breast cancer biomarkers (especially using nipple aspirate fluid mirroring breast microenvironment), studies have highlighted an optimal combination of well-known biomarkers: uPA + PAI-1 + TF. When individually investigated they did not show perfect accuracy in predicting the presence of breast cancer, whereas the triple combination has been demonstrated to be highly predictive of pre-cancer and/or cancerous conditions, approaching 97-100% accuracy. Despite the heterogeneous composition of breast cancer and the difficulties to find specific breast cancer biomolecules, the noninvasive analysis of the nipple aspirate fluid secretome may significantly improve the discovery of promising biomarkers, helping also the differentiation among benign and invasive breast diseases, opening new frontiers in early oncoproteomics

  6. Angiogenin induces modifications in the astrocyte secretome: relevance to amyotrophic lateral sclerosis.

    Science.gov (United States)

    Skorupa, Alexandra; Urbach, Serge; Vigy, Oana; King, Matthew A; Chaumont-Dubel, Séverine; Prehn, Jochen H M; Marin, Philippe

    2013-10-08

    Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease affecting lower and upper motoneurons. Recent studies have shown that both motor neurons and non-neuronal neighbouring cells such as astrocytes and microglia contribute to disease pathology. Loss-of-function mutations in the angiogenin (ANG) gene have been identified in ALS patients. Angiogenin is enriched in motor neurons and exerts neuroprotective effects in vitro and in vivo. We have recently shown that motoneurons secrete angiogenin, and that secreted angiogenin is exclusively taken up by astrocytes, suggesting a paracrine mechanism of neuroprotection. To gain insights into astrocyte effectors of angiogenin-induced neuroprotection, we examined alterations in the astrocyte secretome induced by angiogenin treatment using quantitative proteomics based on Stable Isotope Labelling by Amino Acids in Cell Culture (SILAC). We identified 2128 proteins in conditioned media from primary cultured mouse astrocytes, including 1247 putative secreted proteins. Of these, 60 proteins showed significant regulation of secretion in response to angiogenin stimulation. Regulated proteins include chemokines and cytokines, proteases and protease inhibitors as well as proteins involved in reorganising the extracellular matrix. In conclusion, this proteomic analysis increases our knowledge of the astrocyte secretome and reveals potential molecular substrates underlying the paracrine, neuroprotective effects of angiogenin. This study provides the most extensive list of astrocyte-secreted proteins available and reveals novel potential molecular substrates of astrocyte-neuron communication. It also identifies a set of astrocyte-derived proteins that might slow down ALS disease progression. It should be relevant to a large readership of neuroscientists and clinicians, in particular those with an interest in the physiological and pathological roles of astrocytes and in the molecular and cellular mechanisms underlying

  7. Inoculum levels of Meloidogyne hispanica and M. javanica affect nematode reproduction, and growth of tomato genotypes

    Directory of Open Access Journals (Sweden)

    Carla M.N. MALEITA

    2013-01-01

    Full Text Available A pot experiment was conducted to determine the effects of three inoculum levels (2,500, 5,000 and 10,000 eggs/plant on the reproduction of Meloidogyne hispanica and M. javanica isolates and growth of the susceptible tomato genotypes Easypeel and Moneymaker, and genotypes Motelle and VFnt-Cherr, which possess the Mi-gene, at 25±2°C. sixty days after inoculation, roots were assessed for gall index (Gi, reproduction factor (Rf=final/initial population density and reproduction index (RI=Rf in the Mi-gene tomato plants/Rf in tomato Easypeel × 100. shoot and root lengths and fresh and dry root and shoot weights were also recorded. both species of Meloidogyne reproduced at all inoculum levels on all four tomato genotypes (4≤GI≤5 and 3.44≤Rf≤317.30. The M. javanica isolate, obtained from an infected potato field, was identified as natural and partially virulent to the Mi-gene (3.71≤RI≤20.19. This emphasizes the need for new sources of resistance to root-knot nematodes and for testing Mi-tomato plants for their susceptibility to local populations. Reproduction of M. javanica and M. hispanica on the resistant Motelle and VFNT-Cherr was significantly less than on the susceptible Easypeel and Moneymaker. VFNT-Cherr was more resistant than Motelle, which suggest an influence of the genetic background of the plants on the nematode response. For Easypeel and Moneymaker, there was a trend of decreased plant growth parameters with increasing inoculum level, irrespective of the nematode species, due to damage caused by the increasing number of nematodes that invaded plant roots. However, these values on Motelle and VFnt-Cherr remained relatively stable regarding shoot and total shoot plus root dry weight. the reproductive rate of M. javanica was greater than that of M. hispanica on all four genotypes tested, and tomato plants inoculated with M. hispanica had greater growth parameters. the resistance response of the Mi-tomato plants was independent

  8. Fungal Secretome Analysis via PepSAVI-MS: Identification of the Bioactive Peptide KP4 from Ustilago maydis

    Science.gov (United States)

    Kirkpatrick, Christine L.; Parsley, Nicole C.; Bartges, Tessa E.; Cooke, Madeline E.; Evans, Wilaysha S.; Heil, Lilian R.; Smith, Thomas J.; Hicks, Leslie M.

    2018-02-01

    Fungal secondary metabolites represent a rich and largely untapped source for bioactive molecules, including peptides with substantial structural diversity and pharmacological potential. As methods proceed to take a deep dive into fungal genomes, complimentary methods to identify bioactive components are required to keep pace with the expanding fungal repertoire. We developed PepSAVI-MS to expedite the search for natural product bioactive peptides and herein demonstrate proof-of-principle applicability of the pipeline for the discovery of bioactive peptides from fungal secretomes via identification of the antifungal killer toxin KP4 from Ustilago maydis P4. This work opens the door to investigating microbial secretomes with a new lens, and could have broad applications across human health, agriculture, and food safety. [Figure not available: see fulltext.

  9. Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow

    DEFF Research Database (Denmark)

    Deshmukh, Atul S; Cox, Juergen; Jensen, Lars Juhl

    2015-01-01

    the secretome of lipid-induced insulin-resistant skeletal muscle cells. Our workflow identified 1073 putative secreted proteins including 32 growth factors, 25 cytokines, and 29 metalloproteinases. In addition to previously reported proteins, we report hundreds of novel ones. Intriguingly, ∼40% of the secreted......-resistant conditions. Our study demonstrates an efficient combined experimental and bioinformatics workflow to identify putative secreted proteins from insulin-resistant skeletal muscle cells, which could easily be adapted to other cellular models....

  10. Subcellular localization of extracytoplasmic proteins in monoderm bacteria: rational secretomics-based strategy for genomic and proteomic analyses.

    Directory of Open Access Journals (Sweden)

    Sandra Renier

    Full Text Available Genome-scale prediction of subcellular localization (SCL is not only useful for inferring protein function but also for supporting proteomic data. In line with the secretome concept, a rational and original analytical strategy mimicking the secretion steps that determine ultimate SCL was developed for Gram-positive (monoderm bacteria. Based on the biology of protein secretion, a flowchart and decision trees were designed considering (i membrane targeting, (ii protein secretion systems, (iii membrane retention, and (iv cell-wall retention by domains or post-translocational modifications, as well as (v incorporation to cell-surface supramolecular structures. Using Listeria monocytogenes as a case study, results were compared with known data set from SCL predictors and experimental proteomics. While in good agreement with experimental extracytoplasmic fractions, the secretomics-based method outperforms other genomic analyses, which were simply not intended to be as inclusive. Compared to all other localization predictors, this method does not only supply a static snapshot of protein SCL but also offers the full picture of the secretion process dynamics: (i the protein routing is detailed, (ii the number of distinct SCL and protein categories is comprehensive, (iii the description of protein type and topology is provided, (iv the SCL is unambiguously differentiated from the protein category, and (v the multiple SCL and protein category are fully considered. In that sense, the secretomics-based method is much more than a SCL predictor. Besides a major step forward in genomics and proteomics of protein secretion, the secretomics-based method appears as a strategy of choice to generate in silico hypotheses for experimental testing.

  11. Effect of Artemisia vulgaris Rhizome Extracts on Hatching, Mortality, and Plant Infectivity of Meloidogyne megadora.

    Science.gov (United States)

    da R Costa, S Dos S; de A Santos, M S N; Ryan, M F

    2003-12-01

    The activity of an ethanolic rhizome extract of Artemisia vulgaris against hatching, mortality, host plant infectivity, and galling of the root-knot nematode Meloidogyne megadora was investigated. The extract inhibited egg hatch (50% inhibition by 2.35mg/ml) and caused second-stage juvenile mortality (50% lethality at 12 hours' exposure to 55.67 mg/ml), both in a dose-dependent manner. Nematode infectivity on Phaseolus vulgaris 'Bencanta Trepar', a susceptible host, decreased in a dose-responsive manner (50% inhibition at 6.28 hours exposure to extract). When applied directly to the soil, the extract reduced root galling on a susceptible host in a dose-dependent manner (50% inhibition by 32.36 mg/ml). After dilution in distilled water, the extract did not lose activity when stored in the dark at 25 degrees C for 15 days.

  12. Subproduto da indústria vinícola no controle de Meloidogyne javanica

    OpenAIRE

    Reiner, Driéli Aparecida

    2015-01-01

    Os objetivos deste estudo foram avaliar a eficiência da atividade nematicida de diferentes concentrações do extrato aquoso do subproduto da indústria vinícola sobre a eclosão e a mortalidade de juvenis de segundo estádio (J2) de Meloidogyne javanica e o efeito da incorporação ao solo desse subproduto sobre a eclosão e a viabilidade de J2 do nematoide; identificar, por meio da análise de cromatografia líquida de alta eficiência, a composição fitoquímica do extrato aquoso do subproduto da indús...

  13. Mangrove formulations for the management of meloidogyne javanica (treub) chitwood under field conditions

    International Nuclear Information System (INIS)

    Tariq, M.; Dawar, S.

    2015-01-01

    Six months field experiment were set up from June to November in Department of Botany, University of Karachi to investigate the influence of mangroves (Avicennia marina, Rhizophora mucronata) parts separately or combined parts for the control of Meloidogyne javanica (Treub.) Chitwood. Mangroves parts including leaves, stem, pneumatophore and combined parts were applied to field in form of powder at rate of 60 g/plot, capsules and pellets at 120 g/plot. Results pertaining to seed germination percentage, plant length, plant weight and yield showed outstanding improvement in both okra and mung bean when combined parts pellets of A. marina and R. mucronata were used. All parts of A. marina, R. mucronata pellets and powder were effective in controlling of M. javanica infection but maximum reduction in root knot nematode were obtained by the amendment of mangrove combined parts powder. (author)

  14. Physiological changes in leaves of mungbean plants infected with Meloidogyne javanica

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    N. Ahmed

    2009-09-01

    Full Text Available Sequential changes induced by the root-knot nematode Meloidogyne javanica (Treub Chitwood in mung bean (Vigna radiata (L. Wilczek cv. MN95 were studied. Physiological and biochemical changes were recorded 15, 30 and 45 days after nematode inoculation. The changes noted varied with the length of exposure to the nematode. Chlorophyll and carotenoid contents decreased in nematode-infected plants. Total phenols increased in the leaves compared with the controls for up to 30 days after inoculation. Protein content declined significantly at 30 days after exposure to the nematodes. Amylase activity was enhanced in both the leaves and the stems as compared with the controls. The results suggested that plants responded to the nematode by adopting biochemical strategies to withstand the adverse effects of infection.

  15. Inferring alterations in cell-to-cell communication in HER2+ breast cancer using secretome profiling of three cell models

    Science.gov (United States)

    Klinke, David J.; Kulkarni, Yogesh M.; Wu, Yueting; Byrne-Hoffman, Christina

    2015-01-01

    Challenges in demonstrating durable clinical responses to molecular-targeted therapies has sparked a re-emergence in viewing cancer as an evolutionary process. In somatic evolution, cellular variants are introduced through a random process of somatic mutation and are selected for improved fitness through a competition for survival. In contrast to Darwinian evolution, cellular variants that are retained may directly alter the fitness competition. If cell-to-cell communication is important for selection, the biochemical cues secreted by malignant cells that emerge should be altered to bias this fitness competition. To test this hypothesis, we compared the proteins secreted in vitro by two human HER2+ breast cancer cell lines (BT474 and SKBR3) relative to a normal human mammary epithelial cell line (184A1) using a proteomics workflow that leveraged two-dimensional gel electrophoresis (2DE) and MALDI-TOF mass spectrometry. Supported by the 2DE secretome maps and identified proteins, the two breast cancer cell lines exhibited secretome profiles that were similar to each other and, yet, were distinct from the 184A1 secretome. Using protein-protein interaction and pathway inference tools for functional annotation, the results suggest that all three cell lines secrete exosomes, as confirmed by scanning electron microscopy. Interestingly, the HER2+ breast cancer cell line exosomes are enriched in proteins involved in antigen processing and presentation and glycolytic metabolism. These pathways are associated with two of the emerging hallmarks of cancer: evasion of tumor immunosurveillance and deregulating cellular energetics. PMID:24752654

  16. Secretome analyses of Aβ(1-42) stimulated hippocampal astrocytes reveal that CXCL10 is involved in astrocyte migration.

    Science.gov (United States)

    Lai, Wenjia; Wu, Jing; Zou, Xiao; Xie, Jian; Zhang, Liwei; Zhao, Xuyang; Zhao, Minzhi; Wang, Qingsong; Ji, Jianguo

    2013-02-01

    Amyloid-beta (Aβ) aggregation plays an important role in the development of Alzheimer's disease (AD). In the AD brain, amyloid plaques are surrounded by reactive astrocytes, and many essential functions of astrocytes have been reported to be mediated by protein secretion. However, the roles of activated astrocytes in AD progression are under intense debate. To provide an in-depth view of the secretomes of activated astrocytes, we present in this study a quantitative profile of rat hippocampal astrocyte secretomes at multiple time points after both brief and sustained Aβ(1-42) stimulation. Using SILAC labeling and LC-MS/MS analyses, we identified 19 up-regulated secreted proteins after Aβ(1-42) treatment. These differentially expressed proteins have been suggested to be involved in key aspects of biological processes, such as cell recruitment, Aβ clearance, and regulation of neurogenesis. Particularly, we validated the role played by CXCL10 in promoting astrocyte aggregation around amyloid plagues through in vitro cell migration analysis. This research provides global, quantitative profiling of astrocyte secretomes produced on Aβ stimulation and hence provides a detailed molecular basis for the relationship between amyloid plaques and astrocyte aggregation; the findings thus have important implications for further investigations into AD development and therapy.

  17. Differences in Stem Cell Processing Lead to Distinct Secretomes Secretion-Implications for Differential Results of Previous Clinical Trials of Stem Cell Therapy for Myocardial Infarction.

    Science.gov (United States)

    Wernly, Bernhard; Gonçalves, Inês; Kiss, Attila; Paar, Vera; Mösenlechner, Tobias; Leisch, Michael; Santer, David; Motloch, Lukas Jaroslaw; Klein, Klaus U; Tretter, Eva V; Kretzschmar, Daniel; Podesser, Bruno; Jung, Christian; Hoppe, Uta C; Lichtenauer, Michael

    2017-09-01

    Stem cell therapy for acute myocardial infarction (AMI) seemed to be a promising therapy, however, large clinical trials brought differential outcome. It has been shown that paracrine effects of secretomes of stem cells rather than cell therapy might play a fundamental role. The present study seeks to compare cell processing protocols of clinical trials and investigate effects of differential cell culture conditions on chemokine secretion and functional effects. Different secretomes are compared regarding IL-8, VEGF, MCP-1, and TNF-alpha secretion. Secretome mediated effects are evaluated on endothelial cell (HUVEC) tube formation and migration. Cardioprotective signaling kinases in human cardiomyocytes are determined by Western immunoblotting. Cells processed according to the REPAIR-AMI protocol secrete significantly higher amounts of IL-8 (487.3 ± 1231.1 vs 9.1 ± 8.2 pg mL -1 ; p Cell processing conditions have a major impact on the composition of the secretome. The REPAIR-AMI secretome significantly enhances proangiogenic chemokine secretion, angiogenesis, cell migration, and cardioprotective signaling pathways. These results might explain differential outcomes between clinical trials. Optimizing cell processing protocols with special regards to paracrine factors, might open a new therapeutic concept for improving patient outcome. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. Identification of colonic fibroblast secretomes reveals secretory factors regulating colon cancer cell proliferation.

    Science.gov (United States)

    Chen, Sun-Xia; Xu, Xiao-En; Wang, Xiao-Qing; Cui, Shu-Jian; Xu, Lei-Lei; Jiang, Ying-Hua; Zhang, Yang; Yan, Hai-Bo; Zhang, Qian; Qiao, Jie; Yang, Peng-Yuan; Liu, Feng

    2014-10-14

    Stromal microenvironment influences tumor cell proliferation and migration. Fibroblasts represent the most abundant stromal constituents. Here, we established two pairs of normal fibroblast (NF) and cancer-associated fibroblast (CAF) cultures from colorectal adenocarcinoma tissues and the normal counterparts. The NFs and CAFs were stained positive for typical fibroblast markers and inhibited colon cancer (CC) cell proliferation in in vitro cocultures and in xenograft mouse models. The fibroblast conditioned media were analyzed using LC-MS and 227 proteins were identified at a false discovery rate of 1.3%, including 131 putative secretory and 20 plasma membrane proteins. These proteins were enriched for functional categories of extracellular matrix, adhesion, cell motion, inflammatory response, redox homeostasis and peptidase inhibitor. Secreted protein acidic and rich in cysteine, transgelin, follistatin-related protein 1 (FSTL1) and decorin was abundant in the fibroblast secretome as confirmed by Western blot. Silencing of FSTL1 and transgelin in colonic fibroblast cell line CCD-18Co induced an accelerated proliferation of CC cells in cocultures. Exogenous FSTL1 attenuates CC cell proliferation in a negative fashion. FSTL1 was upregulated in CC patient plasma and cancerous tissues but had no implication in prognosis. Our results provided novel insights into the molecular signatures and modulatory role of CC associated fibroblasts. In this study, a label-free LC-MS was performed to analyze the secretomes of two paired primary fibroblasts, which were isolated from fresh surgical specimen of colorectal adenocarcinoma and adjacent normal colonic tissues and exhibited negative modulatory activity for colon cancer cell growth in in vitro cocultures and in vivo xenograph mouse models. Follistatin-related protein 1 was further revealed to be one of the stroma-derived factors of potential suppression role for colon cancer cell proliferation. Our results provide novel

  19. Proteomic Investigation of Rhizoctonia solani AG 4 Identifies Secretome and Mycelial Proteins with roles in Plant Cell Wall Degradation and Virulence

    KAUST Repository

    Lakshman, Dilip

    2016-03-28

    Rhizoctonia solani AG 4 is a soilborne necrotrophic fungal plant pathogen that causes economically important diseases on agronomic crops worldwide. Here we used a proteomics approach to characterize both intracellular proteins and the secretome of R. solani AG 4 isolate Rs23A under several growth conditions; the secretome being highly important in pathogenesis. From over 500 total secretome and soluble intracellular protein spots from 2-D gels, 457 protein spots were analyzed and 318 proteins positively matched with fungal proteins of known function by comparison with available R. solani genome databases specific for anastomosis groups 1-IA, 1-IB, and 3. These proteins were categorized to possible cellular locations and functional groups; and for some proteins their putative roles in plant cell wall degradation and virulence. The majority of the secreted proteins were grouped to extracellular regions and contain hydrolase activity.

  20. Secretome analysis defines the major role of SecDF in Staphylococcus aureus virulence.

    Directory of Open Access Journals (Sweden)

    Chantal Quiblier

    Full Text Available The Sec pathway plays a prominent role in protein export and membrane insertion, including the secretion of major bacterial virulence determinants. The accessory Sec constituent SecDF has been proposed to contribute to protein export. Deletion of Staphylococcus aureus secDF has previously been shown to reduce resistance, to alter cell separation, and to change the expression of certain virulence factors. To analyse the impact of the secDF deletion in S. aureus on protein secretion, a quantitative secretome analysis was performed. Numerous Sec signal containing proteins involved in virulence were found to be decreased in the supernatant of the secDF mutant. However, two Sec-dependent hydrolases were increased in comparison to the wild type, suggesting additional indirect, regulatory effects to occur upon deletion of secDF. Adhesion, invasion, and cytotoxicity of the secDF mutant were reduced in human umbilical vein endothelial cells. Virulence was significantly reduced using a Galleria mellonella insect model. Altogether, SecDF is a promising therapeutic target for controlling S. aureus infections.

  1. Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482.

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    Warren W Wakarchuk

    Full Text Available The bacteria in the genus Cellulomonas are known for their ability to degrade plant cell wall biomass. Cellulomonas fimi ATCC 484 and C. flavigena ATCC 482 have been the subject of much research into secreted cellulases and hemicellulases. Recently the genome sequences of both C. fimi ATCC 484 and C. flavigena ATCC 482 were published, and a genome comparison has revealed their full spectrum of possible carbohydrate-active enzymes (CAZymes. Using mass spectrometry, we have compared the proteins secreted by C. fimi and C. flavigena during growth on the soluble cellulose substrate, carboxymethylcellulose (CMC, as well as a soluble xylan fraction. Many known C. fimi CAZymes were detected, which validated our analysis, as were a number of new CAZymes and other proteins that, though identified in the genome, have not previously been observed in the secretome of either organism. Our data also shows that many of these are co-expressed on growth of either CMC or xylan. This analysis provides a new perspective on Cellulomonas enzymes and provides many new CAZyme targets for characterization.

  2. Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482.

    Science.gov (United States)

    Wakarchuk, Warren W; Brochu, Denis; Foote, Simon; Robotham, Anna; Saxena, Hirak; Erak, Tamara; Kelly, John

    2016-01-01

    The bacteria in the genus Cellulomonas are known for their ability to degrade plant cell wall biomass. Cellulomonas fimi ATCC 484 and C. flavigena ATCC 482 have been the subject of much research into secreted cellulases and hemicellulases. Recently the genome sequences of both C. fimi ATCC 484 and C. flavigena ATCC 482 were published, and a genome comparison has revealed their full spectrum of possible carbohydrate-active enzymes (CAZymes). Using mass spectrometry, we have compared the proteins secreted by C. fimi and C. flavigena during growth on the soluble cellulose substrate, carboxymethylcellulose (CMC), as well as a soluble xylan fraction. Many known C. fimi CAZymes were detected, which validated our analysis, as were a number of new CAZymes and other proteins that, though identified in the genome, have not previously been observed in the secretome of either organism. Our data also shows that many of these are co-expressed on growth of either CMC or xylan. This analysis provides a new perspective on Cellulomonas enzymes and provides many new CAZyme targets for characterization.

  3. An optimized approach to recover secreted proteins from fibroblast conditioned-media for secretomic analysis

    Directory of Open Access Journals (Sweden)

    Bastien ePare

    2016-03-01

    Full Text Available The proteins secreted by a particular type of cell, the secretome, play important roles in the regulation of many physiological processes via paracrine/autocrine mechanisms, and they are of increasing interest to help understanding rare diseases and to identify potential biomarkers and therapeutic targets. To facilitate ongoing research involving secreted proteins, we revisited cell culture protocols and whole secreted protein enrichment protocols. A reliable method for culturing and precipitating secreted protein from patient-derived fibroblast conditioned-medium was established. The method is based on the optimization of cell confluency and incubation time conditions. The well-established carrier-based TCA-DOC protein precipitation method was consistently found to give higher protein recovery yield. According to our results, we therefore propose that protein enrichment should be performed by TCA-DOC precipitation method 48 hours at 95% of confluence in a serum-deprived culture medium. Given the importance of secreted proteins as a source to elucidate the pathogenesis of rare diseases, especially neurological disorders, this approach may help to discover novel candidate biomarkers with potential clinical significance.

  4. Peptidomics and Secretomics of the Mammalian Peripheral Sensory-Motor System.

    Science.gov (United States)

    Tillmaand, Emily G; Yang, Ning; Kindt, Callie A C; Romanova, Elena V; Rubakhin, Stanislav S; Sweedler, Jonathan V

    2015-12-01

    The dorsal root ganglion (DRG) and its anatomically and functionally associated spinal nerve and ventral and dorsal roots are important components of the peripheral sensory-motor system in mammals. The cells within these structures use a number of peptides as intercellular signaling molecules. We performed a variety of mass spectrometry (MS)-based characterizations of peptides contained within and secreted from these structures, and from isolated and cultured DRG cells. Liquid chromatography-Fourier transform MS was utilized in DRG and nerve peptidome analysis. In total, 2724 peptides from 296 proteins were identified in tissue extracts. Neuropeptides are among those detected, including calcitonin gene-related peptide I, little SAAS, and known hemoglobin-derived peptides. Solid phase extraction combined with direct matrix-assisted laser desorption/ionization time-of-flight MS was employed to investigate the secretome of these structures. A number of peptides were detected in the releasate from semi-intact preparations of DRGs and associated nerves, including neurofilament- and myelin basic protein-related peptides. A smaller set of analytes was observed in releasates from cultured DRG neurons. The peptide signals observed in the releasates have been mass-matched to those characterized and identified in homogenates of entire DRGs and associated nerves. This data aids our understanding of the chemical composition of the mammalian peripheral sensory-motor system, which is involved in key physiological functions such as nociception, thermoreception, itch sensation, and proprioception.

  5. Revealing Glycoproteins in the Secretome of MCF-7 Human Breast Cancer Cells

    Directory of Open Access Journals (Sweden)

    Aik-Aun Tan

    2015-01-01

    Full Text Available Breast cancer is one of the major issues in the field of oncology, reported with a higher prevalence rate in women worldwide. In attempt to reveal the potential biomarkers for breast cancer, the findings of differentially glycosylated haptoglobin and osteonectin in previous study have drawn our attention towards glycoproteins of secretome from the MCF-7 cancer cell line. In the present study, further analyses were performed on the medium of MCF-7 cells by subjecting it to two-dimensional analyses followed by image analysis in contrast to the medium of human mammary epithelial cells (HMEpC as a negative control. Carboxypeptidase A4 (CPA4, alpha-1-antitrypsin (AAT, haptoglobin (HP, and HSC70 were detected in the medium of MCF-7, while only CPA4 and osteonectin (ON were detected in HMEpC medium. In addition, CPA4 was detected as upregulated in the MCF-7 medium. Further analysis by lectin showed that CPA4, AAT, HP, and HSC70 were secreted as N-glycan in the medium of MCF-7, with HP also showing differentially N-glycosylated isoforms. For the HMEpC, only CPA4 was detected as N-glycan. No O-glycan was detected in the medium of HMEpC but MCF-7 expressed O-glycosylated CPA4 and HSC70. All these revealed that glycoproteins could be used as glycan-based biomarkers for the prognosis of breast cancer.

  6. The Plant Ovule Secretome: A Different View toward Pollen-Pistil Interactions.

    Science.gov (United States)

    Liu, Yang; Joly, Valentin; Dorion, Sonia; Rivoal, Jean; Matton, Daniel P

    2015-11-06

    During plant sexual reproduction, continuous exchange of signals between the pollen and the pistil (stigma, style, and ovary) plays important roles in pollen recognition and selection, establishing breeding barriers and, ultimately, leading to optimal seed set. After navigating through the stigma and the style, pollen tubes (PTs) reach their final destination, the ovule. This ultimate step is also regulated by numerous signals emanating from the embryo sac (ES) of the ovule. These signals encompass a wide variety of molecules, but species-specificity of the pollen-ovule interaction relies mainly on secreted proteins and their receptors. Isolation of candidate genes involved in pollen-pistil interactions has mainly relied on transcriptomic approaches, overlooking potential post-transcriptional regulation. To address this issue, ovule exudates were collected from the wild potato species Solanum chacoense using a tissue-free gravity-extraction method (tf-GEM). Combined RNA-seq and mass spectrometry-based proteomics led to the identification of 305 secreted proteins, of which 58% were ovule-specific. Comparative analyses using mature ovules (attracting PTs) and immature ovules (not attracting PTs) revealed that the last maturation step of ES development affected almost half of the ovule secretome. Of 128 upregulated proteins in anthesis stage, 106 were not regulated at the mRNA level, emphasizing the importance of post-transcriptional regulation in reproductive development.

  7. Peptidomics and Secretomics of the Mammalian Peripheral Sensory-Motor System

    Science.gov (United States)

    Tillmaand, Emily G.; Yang, Ning; Kindt, Callie A. C.; Romanova, Elena V.; Rubakhin, Stanislav S.; Sweedler, Jonathan V.

    2015-12-01

    The dorsal root ganglion (DRG) and its anatomically and functionally associated spinal nerve and ventral and dorsal roots are important components of the peripheral sensory-motor system in mammals. The cells within these structures use a number of peptides as intercellular signaling molecules. We performed a variety of mass spectrometry (MS)-based characterizations of peptides contained within and secreted from these structures, and from isolated and cultured DRG cells. Liquid chromatography-Fourier transform MS was utilized in DRG and nerve peptidome analysis. In total, 2724 peptides from 296 proteins were identified in tissue extracts. Neuropeptides are among those detected, including calcitonin gene-related peptide I, little SAAS, and known hemoglobin-derived peptides. Solid phase extraction combined with direct matrix-assisted laser desorption/ionization time-of-flight MS was employed to investigate the secretome of these structures. A number of peptides were detected in the releasate from semi-intact preparations of DRGs and associated nerves, including neurofilament- and myelin basic protein-related peptides. A smaller set of analytes was observed in releasates from cultured DRG neurons. The peptide signals observed in the releasates have been mass-matched to those characterized and identified in homogenates of entire DRGs and associated nerves. This data aids our understanding of the chemical composition of the mammalian peripheral sensory-motor system, which is involved in key physiological functions such as nociception, thermoreception, itch sensation, and proprioception.

  8. Alterações anatômicas induzidas por Meloidogyne enterolobii (=M. mayaguensis e Meloidogyne javanica em tomateiros resistentes a meloidoginose

    Directory of Open Access Journals (Sweden)

    Juliana Nogueira Westerich

    2012-09-01

    Full Text Available A resistência de tomateiros (Solanum lycopersicum L. a M. incognita, M. javanica e M. arenaria, conferida pela presença do gene Mi, não contempla a espécie M. enterolobii (=M. mayaguensis. O objetivo da pesquisa foi verificar as alterações anatômicas causadas por M. enterolobii no sistema radicular de porta-enxertos de tomateiro com o gene de resistência Mi ('Magnet' e Helper M' e compará-las com as causadas por M. javanica. As observações anatômicas das raízes foram feitas com auxílio de microscópio de luz e os aspectos mais relevantes foram fotografados. Com base em contagens e mensurações do tamanho dos sítios de alimentação e das células gigantes, foram efetuadas analises utilizando o método estatístico de Análise de Agrupamento. O aparecimento de células nutridoras incitadas por M. enterolobii foi verificado em ambos os porta-enxertos de tomateiro, entre 10 e 17 dias após a inoculação (DAI. O número e a área de sítios de alimentação e de células gigantes foram menores aos 17 DAI do que aos 24 DAI. Nesta época (24 DAI, foram observados sítios de alimentação constituídos pela presença de várias células nutridoras multinucleadas, com parede celular espessa, citoplasma denso e granuloso. Os tecidos vasculares apresentaram-se comprimidos e desorganizados, foi observada, também, hipertrofia de células do parênquima cortical. As raízes inoculadas com M. javanica não apresentaram alterações anatômicas.

  9. Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.

    Science.gov (United States)

    Ma'ayeh, Showgy Y; Liu, Jingyi; Peirasmaki, Dimitra; Hörnaeus, Katarina; Bergström Lind, Sara; Grabherr, Manfred; Bergquist, Jonas; Svärd, Staffan G

    2017-12-01

    Giardia intestinalis is a non-invasive protozoan parasite that causes giardiasis in humans, the most common form of parasite-induced diarrhea. Disease mechanisms are not completely defined and very few virulence factors are known. To identify putative virulence factors and elucidate mechanistic pathways leading to disease, we have used proteomics to identify the major excretory-secretory products (ESPs) when Giardia trophozoites of WB and GS isolates (assemblages A and B, respectively) interact with intestinal epithelial cells (IECs) in vitro. The main parts of the IEC and parasite secretomes are constitutively released proteins, the majority of which are associated with metabolism but several proteins are released in response to their interaction (87 and 41 WB and GS proteins, respectively, 76 and 45 human proteins in response to the respective isolates). In parasitized IECs, the secretome profile indicated effects on the cell actin cytoskeleton and the induction of immune responses whereas that of Giardia showed anti-oxidation, proteolysis (protease-associated) and induction of encystation responses. The Giardia secretome also contained immunodominant and glycosylated proteins as well as new candidate virulence factors and assemblage-specific differences were identified. A minor part of Giardia ESPs had signal peptides (29% for both isolates) and extracellular vesicles were detected in the ESPs fractions, suggesting alternative secretory pathways. Microscopic analyses showed ESPs binding to IECs and partial internalization. Parasite ESPs reduced ERK1/2 and P38 phosphorylation and NF-κB nuclear translocation. Giardia ESPs altered gene expression in IECs, with a transcriptional profile indicating recruitment of immune cells via chemokines, disturbances in glucose homeostasis, cholesterol and lipid metabolism, cell cycle and induction of apoptosis. This is the first study identifying Giardia ESPs and evaluating their effects on IECs. It highlights the importance of

  10. Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.

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    Showgy Y Ma'ayeh

    2017-12-01

    Full Text Available Giardia intestinalis is a non-invasive protozoan parasite that causes giardiasis in humans, the most common form of parasite-induced diarrhea. Disease mechanisms are not completely defined and very few virulence factors are known.To identify putative virulence factors and elucidate mechanistic pathways leading to disease, we have used proteomics to identify the major excretory-secretory products (ESPs when Giardia trophozoites of WB and GS isolates (assemblages A and B, respectively interact with intestinal epithelial cells (IECs in vitro.The main parts of the IEC and parasite secretomes are constitutively released proteins, the majority of which are associated with metabolism but several proteins are released in response to their interaction (87 and 41 WB and GS proteins, respectively, 76 and 45 human proteins in response to the respective isolates. In parasitized IECs, the secretome profile indicated effects on the cell actin cytoskeleton and the induction of immune responses whereas that of Giardia showed anti-oxidation, proteolysis (protease-associated and induction of encystation responses. The Giardia secretome also contained immunodominant and glycosylated proteins as well as new candidate virulence factors and assemblage-specific differences were identified. A minor part of Giardia ESPs had signal peptides (29% for both isolates and extracellular vesicles were detected in the ESPs fractions, suggesting alternative secretory pathways. Microscopic analyses showed ESPs binding to IECs and partial internalization. Parasite ESPs reduced ERK1/2 and P38 phosphorylation and NF-κB nuclear translocation. Giardia ESPs altered gene expression in IECs, with a transcriptional profile indicating recruitment of immune cells via chemokines, disturbances in glucose homeostasis, cholesterol and lipid metabolism, cell cycle and induction of apoptosis.This is the first study identifying Giardia ESPs and evaluating their effects on IECs. It highlights the

  11. Hydrogen Cyanide Produced by Pseudomonas chlororaphis O6 Exhibits Nematicidal Activity against Meloidogyne hapla

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    Beom Ryong Kang

    2018-02-01

    Full Text Available Root-knot nematodes (Meloidogyne spp. are parasites that attack many field crops and orchard trees, and affect both the quantity and quality of the products. A root-colonizing bacterium, Pseudomonas chlororaphis O6, possesses beneficial traits including strong nematicidal activity. To determine the molecular mechanisms involved in the nematicidal activity of P. chlororaphis O6, we constructed two mutants; one lacking hydrogen cyanide production, and a second lacking an insecticidal toxin, FitD. Root drenching with wild-type P. chlororaphis O6 cells caused juvenile mortality in vitro and in planta. Efficacy was not altered in the fitD mutant compared to the wild-type but was reduced in both bioassays for the mutant lacking hydrogen cyanide production. The reduced number of galls on tomato plants caused by the wild-type strain was comparable to that of a standard chemical nematicide. These findings suggest that hydrogen cyanide-producing root colonizers, such as P. chlororaphis O6, could be formulated as “green” nematicides that are compatible with many crops and offer agricultural sustainability.

  12. Effects of silicon on the penetration and reproduction events of Meloidogyne exigua on coffee roots

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    Rodrigo Vieira Silva

    2015-06-01

    Full Text Available Considering that the root-knot nematode Meloidogyne exigua has caused great yield losses to coffee production in Brazil, this study aimed to determine whether the penetration and the reproduction events of this nematode on the roots of plants from two coffee cultivars with different levels of basal resistance to this nematode could be affected by silicon (Si. Coffee plants from the cultivars Catuaí and IAPAR 59, which are susceptible and resistant, respectively, to M. exigua, were grown in pots containing Si-deficient soil that was amended with either calcium silicate (+Si or calcium carbonate (–Si. The Si concentration on the root tissue significantly increased by 159 and 97% for the +Si plants from the cultivars Catuaí and IAPAR 59, respectively, compared to the –Si plants of these cultivars. The population of M. exigua, the number of galls and the number of eggs were significantly reduced on the roots of the +Si plants of the cultivars Catuaí and IAPAR 59 compared to the –Si plants of these cultivars. It was concluded that the development and reproduction events of M. exigua were negatively impacted on the roots of coffee plants supplied with Si.

  13. Optimum Concentrations of Trichoderma longibrachiatum and Cadusafos for Controlling Meloidogyne javanica on Zucchini Plants.

    Science.gov (United States)

    Sokhandani, Zahra; Moosavi, Mohammad Reza; Basirnia, Tahereh

    2016-03-01

    A factorial experiment was established in a completely randomized design to verify the effect of different inoculum levels of an Iranian isolate of Trichoderma longibrachiatum separately and in combination with various concentrations of cadusafos against Meloidogyne javanica in the greenhouse. Zucchini seeds were soaked for 12 hr in five densities (0, 10(5), 10(6), 10(7), and 10(8) spores/ml suspension) of the fungus prior to planting in pots containing four concentrations of cadusafos (0, 0.5, 1, and 2 mg a.i./kg soil). The data were analyzed using a custom response surface regression model and the response surface curve and contour plots were drawn. Reliability of the model was examined by comparing the result of new experimental treatments with the predicted results. The optimal levels of these two variables also were calculated. The interactive effects of concentrations of Trichoderma and cadusafos were insignificant for several responses such as the total number of eggs per gram soil, the number of intact eggs per gram soil, nematode reproduction factor, and control percent. Closeness of experimental mean values with the expected values proved the validity of the model. The optimal levels of the cadusafos concentration and Trichoderma concentration that caused the best plant growth and lowest nematode reproduction were 1.7 mg a.i./kg soil and 10(8) conidia/ml suspension, respectively.

  14. Trigonella foenum-graecum (fenugreek-mediated suppression of Meloidogyne javanica in mungbean

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    Tayyaba Zia

    2013-12-01

    Full Text Available Soil amendments with powdered seeds of Trigonella foenum - graecum (fenugreek caused soil suppressiveness against Meloidogyne javanica. Decomposed seeds of fenugreek caused marked reduction in nematode population densities and subsequent root-knot development as compared to the aqueous extract of the seeds indicating that some indirect factors are involved in the suppression of root-knot nematode. Both decomposed seeds and aqueous extracts enhanced plant height and fresh weights of shoot whereas root growth remained uninfluenced. Changes in fungal communities associated with nematode control were studied by comparing population numbers of fungi in the soil and in internal root tissues (endorhiza in non-amended and fenugreekamended soils. Acremonium sp., Chaetomium globosum, Fusarium solani, Macrophomina phaseolina and Rhizoctonia solani were found to colonize inner root tissues of mungbean. Acremonium sp., C. globosum and F.solani were isolated in a relatively higher frequency from roots growing in the amended soils while M. phaseolina and R. solani colonized greatly in roots growing in non-amended soil. Of the fungi isolated from soils, Penicillium brefaldianum caused maximum juvenile mortality of M.javanica whereas F.solani caused greatest inhibition of egg hatch.

  15. Detecção de Meloidogyne enterolobii em mudas de amoreira (Morus nigra L.

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    Vanessa dos Santos Paes-Takahashi

    2015-05-01

    Full Text Available O comércio de mudas sem certificação contribui para disseminação de pragas e doenças, que podem causar sérios danos às plantas cultivadas. Na região de Itapetininga (SP, foram apreendidas, pela equipe da Defesa Agropecuária, mudas de aceroleira, goiabeira e amoreira, comercializadas em caminhões, que apresentavam galhas nas raízes, sintoma típico causado por Meloidogyne spp. A identificação da espécie foi feita através da morfologia da configuração perineal de fêmeas e região labial de machos, bem como através da caracterização do fenótipo enzimático de esterase. Foi constatada a presença de M. enterolobii nas amostras analisadas. Trata-se do primeiro relato do parasitismo de M. enterolobii em mudas de amoreira no mundo.

  16. Greenhouse and field assessment of different organic compounds against guava-parasitic Meloidogyne enterolobii

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    Alexandre Macedo Almeida

    2012-01-01

    Full Text Available Guava decline is a complex disease involving Meloidogyne enterolobii and Fusarium solani and it has caused major direct losses to Brazilian growers. Although several strategies have been sought to control the nematode, the use of organic soil amendments is currently the best approach to manage this disease. To assess the best amount of meat and bone meal (MBM to be incorporated into the soil, guava seedlings inoculated with M. enterolobii were treated with 1-5% v/v of the MBM. Ninety days later variables related to nematode reproduction and plant development were evaluated, which indicated a potential nematicidal effect of the MBM at 3%. Another experiment assessed nematode- and plant-related variables 90 days after treatment of the seedlings with MBM, chitosan, shrimp shell or neem cake at 3%, 0.05%, 2% and 0.1% v/v, respectively. The MBM ranked first, reducing nematode reproduction. This MBM rate was converted to 25 kg/tree and assessed in three application regimes (monthly, bimonthly or trimonthly, for six months, in an orchard affected by guava decline. The variables assessed were soil density of colony forming units (CFU of bacteria and fungus, and soil and/or root density of M. enterolobii, Helicotylenchus sp., and of different nematode trophic groups. In all three application regimes the MBM reduced all plant-parasitic nematodes in the soil and the fungus CFUs. It also promoted an increase in bacterial CFU and bacterivorous nematodes.

  17. Responses of Guava Plants to Inoculation with Arbuscular Mycorrhizal Fungi in Soil Infested with Meloidogyne enterolobii

    Science.gov (United States)

    Campos, Maryluce Albuquerque da Silva; da Silva, Fábio Sérgio Barbosa; Yano-Melo, Adriana Mayumi; de Melo, Natoniel Franklin; Pedrosa, Elvira Maria Régis; Maia, Leonor Costa

    2013-01-01

    In the Northeast of Brazil, expansion of guava crops has been impaired by Meloidogyne enterolobii that causes root galls, leaf fall and plant death. Considering the fact that arbuscular mycorrhizal Fungi (AMF) improve plant growth giving protection against damages by plant pathogens, this work was carried out to select AMF efficient to increase production of guava seedlings and their tolerance to M. enterolobii. Seedlings of guava were inoculated with 200 spores of Gigaspora albida, Glomus etunicatum or Acaulospora longula and 55 days later with 4,000 eggs of M. enterolobii. The interactions between the AMF and M. enterolobii were assessed by measuring leaf number, aerial dry biomass, CO2 evolution and arbuscular and total mycorrhizal colonization. In general, plant growth was improved by the treatments with A. longula or with G. albida. The presence of the nematode decreased arbuscular colonization and increased general enzymatic activity. Higher dehydrogenase activity occurred with the A. longula treatment and CO2 evolution was higher in the control with the nematode. More spores and higher production of glomalin-related soil proteins were observed in the treatment with G. albida. The numbers of galls, egg masses and eggs were reduced in the presence of A. longula. Inoculation with this fungus benefitted plant growth and decreased nematode reproduction. PMID:25288951

  18. Interplay between Carotenoids, Abscisic Acid and Jasmonate Guides the Compatible Rice-Meloidogyne graminicola Interaction

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    Tina Kyndt

    2017-06-01

    Full Text Available In this study, we have characterized the role of carotenoids and chlorophyll in the compatible interaction between the sedentary root knot nematode (RKN Meloidogyne graminicola and the monocot model plant rice (Oryza sativa. Previous transcriptome data showed a differential expression of carotenoid and chlorophyll biosynthesis genes in nematode-induced giant cells and gall tissue. Metabolite measurement showed that galls indeed accumulate chlorophyll a, b and carotenoids, as well as the hormone abscisic acid (ABA. When ABA was externally applied on rice plants, or when ABA-biosynthesis was inhibited, a significant increase in gall formation and nematode development was found, showing the complex role of ABA in this interaction. ABA application suppressed jasmonic acid (JA levels in the plants, while ABA-biosynthesis inhibition lead to increased JA levels confirming an antagonism between ABA and JA in rice roots. In addition, combined applications of ABA and JA showed that the ABA-effect can overcome JA-induced defense. Based on these observations, we hypothesized that the accumulation of chlorophyll and carotenoid precursors would be beneficial to nematode infection. Indeed, when chemically blocking the carotenoid biosynthesis pathway at different steps, which leads to differential accumulation of carotenoids and chlorophyll in the plants, a positive and clear link between accumulation of carotenoids and chlorophyll and rice susceptibility to RKN was detected.

  19. Control potential of Meloidogyne javanica and Ditylenchus spp. using fluorescent Pseudomonas and Bacillus spp.

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    Marcielly F. Turatto

    Full Text Available ABSTRACT Plant Growth Promoting Rhizobacteria (PGPR have different mechanisms of action in the development of plants, such as growth promotion, production of phytohormones and antibiotic substances and changes in root exudates. These help to control plant diseases. In order to evaluate the potential of microorganisms in the control of Meloidogyne javanica and Ditylenchus spp., five rhizobacteria isolated from rhizosphere of garlic cultivated in the Curitibanos (SC region were tested. Hatching chambers were set on Petri dishes, in which were added 10 mL of bacterial suspension and 1 mL of M. javanica eggs suspension, at the rate of 4500, on the filter paper of each chamber. The same procedure was performed with 300 juvenile Ditylenchus spp. The experimental design was completely randomized, with four replications. The evaluations were performed every 72 h for nine days. The antagonized population of nematodes was determined in Peters counting chamber, determining the percentage hatching (for M. javanica and motility (for Ditylenchus spp. Isolates CBSAL02 and CBSAL05 significantly reduced the hatching of M. javanica eggs (74% and 54.77%, respectively and the motility of Ditylenchus spp. (55.19% and 53.53%, respectively in vitro. Isolates were identified as belonging to the genera Pseudomonas (CBSAL05 and Bacillus (CBSAL02.

  20. Efeito de indutores de resistência sobre Meloidogyne exigua do cafeeiro Effect of resistance inducers on Meloidogyne exígua of coffee

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    Sônia Maria de Lima Salgado

    2007-08-01

    Full Text Available A possibilidade de manejo de Meloidogyne exigua Goeldi, 1887, pela ativação de mecanismos de defesa no cafeeiro representa uma alternativa potencialmente útil no manejo desse patógeno. Com este trabalho, objetivou-se avaliar a eclosão e mortalidade de juvenis do segundo estádio (J2 de M. exigua na presença de produtos indutores de resistência e avaliar o efeito do acibenzolar-S-metil (ASM, Bion® na indução de resistência do cafeeiro (Coffea arabica L. 'Catuaí- 144' contra M. exigua. A eclosão e mortalidade do J2 foram avaliadas no ASM e ácido salicílico (AS nas dosagens de 0,2; 0,35 e 0,5 g. i. a./L; e no fosfito de potássio (Hortifós® PK e silicato de potássio (Supa-potássio® nas dosagens 5,0; 7,5 e 10,0 mL/L, empregando água e aldicarbe como testemunhas. No segundo ensaio o ASM (0,2 g i.a./L foi aplicado na quantidade de 125 mL por planta de 'Catuaí-144' com um ano de idade, via pulverização foliar e diretamente ao solo aos 7 dias antes da inoculação e aos 2 e 7 dias após a inoculação de aproximadamente 7000 ovos de M. exigua/planta. Foram utilizadas 8 plantas/tratamento/bloco, totalizando 6 tratamentos (3 épocas de aplicação do ASM, testemunhas absoluta e inoculada, em 4 blocos. Aos 90 dias da inoculação, foi feita a avaliação da população final (número de ovos e juvenis de M. exigua, número de galhas, fator de reprodução (população final/população inicial e peso da matéria fresca da raiz. A dosagem dos produtos não influenciou a eclosão e mortalidade dos J2 de M. exigua. Menor eclosão dos J2 de M. exigua ocorreu igualmente no Supa-potássio® e ácido salicílico, enquanto que a eclosão no ASM e na água foi igual (P The parasitism of coffee roots by Meloidogyne exigua Goeldi, 1887, widespread nematode in the main producing regions, can provoke a series of modifications in the normal development of the plant. The induction of resistance for the activation of existing latent mechanisms of

  1. Differential secretome analysis of Pseudomonas syringae pv tomato using gel-free MS proteomics

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    Jörg eSchumacher

    2014-07-01

    Full Text Available The plant pathogen Pseudomonas syringae pv. tomato (DC3000 causes virulence by delivering effector proteins into host plant cells through its type three secretion system (T3SS. In response to the plant environment DC3000 expresses hypersensitive response and pathogenicity genes (hrp. Pathogenesis depends on the ability of the pathogen to manipulate the plant metabolism and to inhibit plant immunity, which depends to a large degree on the plant’s capacity to recognise both pathogen and microbial determinants (PAMP/MAMP-triggered immunity. We have developed and employed MS-based shotgun and targeted proteomics to (i elucidate the extracellular and secretome composition of DC3000 and (ii evaluate temporal features of the assembly of the T3SS and the secretion process together with its dependence of pH. The proteomic screen, under hrp inducing in vitro conditions, of extracellular and cytoplasmatic fractions indicated the segregated presence of not only T3SS implicated proteins such as HopK1, HrpK1, HrpA1 and Avrpto1, but also of proteins not usually associated with the T3SS or with pathogenicity. Using multiple reaction monitoring MS (MRM-MS to quantify HrpA1 and Avrpto1, we found that HrpA1 is rapidly expressed, at a strict pH-dependent rate and is post-translationally processed extracellularly. These features appear to not interfere with rapid Avrpto1 expression and secretion but may suggest some temporal post-translational regulatory mechanism of the T3SS assembly. The high specificity and sensitivity of the MRM-MS approach should provide a powerful tool to measure secretion and translocation in infected tissues.

  2. Mesenchymal Stem Cells Secretome as a Modulator of the Neurogenic Niche: Basic Insights and Therapeutic Opportunities

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    Antonio eSalgado

    2015-07-01

    Full Text Available Neural stem cells (NSCs and mesenchymal stem cells (MSCs share few characteristics apart from self-renewal and multipotency. In fact, the neurogenic and osteogenic stem cell niches derive from two distinct embryonary structures; while the later originates from the mesoderm, as all the connective tissues do, the first derives from the ectoderm. Therefore, it is highly unlikely that stem cells isolated from one niche could form terminally differentiated cells from the other. Additionally, these two niches are associated to tissues/systems (e.g bone and central nervous system that have markedly different needs and display diverse functions within the human body. Nevertheless they do share common features. For instance, the differentiation of both NSCs and MSCs is intimately associated with the bone morphogenetic protein family. Moreover, both NSCs and MSCs secrete a panel of common growth factors, such as nerve growth factor (NGF, glial derived neurotrophic factor (GDNF, and brain derived neurotrophic factor (BDNF, among others. But it is not the features they share but the interaction between them that seem most important, and worth exploring; namely, it has already been shown that there are mutually beneficially effects when these cell types are co-cultured in vitro. In fact the use of MSCs, and their secretome, become a strong candidate to be used as a therapeutic tool for CNS applications, namely by triggering the endogenous proliferation and differentiation of neural progenitors, among other mechanisms. Quite interestingly it was recently revealed that MSCs could be found in the human brain, in the vicinity of capillaries. In the present review we highlight how MSCs and NSCs in the neurogenic niches interact. Furthermore, we propose directions on this field and explore the future therapeutic possibilities that may arise from the combination/interaction of MSCs and NSCs.

  3. The carbon starvation response of Aspergillus niger during submerged cultivation: Insights from the transcriptome and secretome

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    Nitsche Benjamin M

    2012-08-01

    Full Text Available Abstract Background Filamentous fungi are confronted with changes and limitations of their carbon source during growth in their natural habitats and during industrial applications. To survive life-threatening starvation conditions, carbon from endogenous resources becomes mobilized to fuel maintenance and self-propagation. Key to understand the underlying cellular processes is the system-wide analysis of fungal starvation responses in a temporal and spatial resolution. The knowledge deduced is important for the development of optimized industrial production processes. Results This study describes the physiological, morphological and genome-wide transcriptional changes caused by prolonged carbon starvation during submerged batch cultivation of the filamentous fungus Aspergillus niger. Bioreactor cultivation supported highly reproducible growth conditions and monitoring of physiological parameters. Changes in hyphal growth and morphology were analyzed at distinct cultivation phases using automated image analysis. The Affymetrix GeneChip platform was used to establish genome-wide transcriptional profiles for three selected time points during prolonged carbon starvation. Compared to the exponential growth transcriptome, about 50% (7,292 of all genes displayed differential gene expression during at least one of the starvation time points. Enrichment analysis of Gene Ontology, Pfam domain and KEGG pathway annotations uncovered autophagy and asexual reproduction as major global transcriptional trends. Induced transcription of genes encoding hydrolytic enzymes was accompanied by increased secretion of hydrolases including chitinases, glucanases, proteases and phospholipases as identified by mass spectrometry. Conclusions This study is the first system-wide analysis of the carbon starvation response in a filamentous fungus. Morphological, transcriptomic and secretomic analyses identified key events important for fungal survival and their chronology. The

  4. Meloidogyne lusitanica n. sp. (Nematoda: Meloidogynidae), a Root-knot Nematode Parasitizing Olive Tree (Olea europaea L.)

    OpenAIRE

    de O. Abrantes, Isabel M.; de A. Santos, M. Susana N.

    1991-01-01

    A root-knot nematode from Portugal, Meloidogyne lusitanica n. sp., is described and illustrated from specimens obtained from olive trees (Olea europaea L.). Females of the new species have a characteristic perineal pattern with medium to high trapezoidal dorsal arch with distinct punctuations in the tail terminus area. The excretory pore is located posterior to the stylet, about 1.5-2.5 stylet lengths from the anterior end. The stylet is 17.1 μm long with pear-shaped knobs. Males have a round...

  5. Levantamento de Meloidogyne exigua na cultura da seringueira em São José do Rio Claro, MT, Brasil

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    Bernardo Eduardo Roberto de Almeida

    2003-01-01

    Full Text Available Este trabalho foi realizado com o objetivo de efetuar um levantamento da ocorrência de Meloidogyne exigua em seringueira em São José do Rio Claro, MT. Foram amostradas 191 propriedades agrícolas, totalizando cerca de 18.000ha. Os nematóides foram identificados no Laboratório de Nematologia do Departamento de Fitossanidade da FCAV/UNESP, em Jaboticabal, SP. Foram encontrados níveis populacionais de M. exigua entre 0 e 61.824 juvenis/5g de raízes.

  6. Unraveling the in vitro secretome of the phytopathogen Botrytis cinerea to understand the interaction with its hosts

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    Raquel eGonzález-Fernández

    2015-10-01

    Full Text Available Botrytis cinerea is a necrotrophic fungus with high adaptability to different environments and hosts. It secretes a large number of extracellular proteins, which favor plant tissue penetration and colonization, thus contributing to virulence. Secretomics is a proteomics sub-discipline which study the secreted proteins and their secretion mechanisms, so-called secretome. By using proteomics as experimental approach, many secreted proteins by B. cinerea have been identified from in vitro experiments, and belonging to different functional categories: i cell wall-degrading enzymes such as pectinesterases, and endo-polygalacturonases; ii proteases involved in host protein degradation such as an aspartic protease; iii proteins related to the oxidative burst such as glyoxal oxidase; iv proteins which may induce the plant hypersensitive response such as a cerato-platanin domain-containing protein; and v proteins related to production and secretion of toxins such as malate dehydrogenase. In this mini-review, we made an overview of the proteomics contribution to the study and knowledge of the B. cinerea extracellular secreted proteins based on our current work carried out from in vitro experiments, and recent published papers both in vitro and in planta studies on this fungi. We hypothesize on the putative functions of these secreted proteins, and their connection to the biology of the B. cinerea interaction with its hosts.

  7. Methods for proteomics-based analysis of the human muscle secretome using an in vitro exercise model.

    Science.gov (United States)

    Scheler, Mika; de Angelis, Martin Hrabě; Al-Hasani, Hadi; Häring, Hans-Ulrich; Weigert, Cora; Lehr, Stefan

    2015-01-01

    Over the last decade, the skeletal muscle as a secretory organ gained in importance. A growing number of peptides are described which are produced and released by the muscle fibers and work in an autocrine, paracrine, and endocrine fashion. The contraction-induced secretion of these myokines is considered to contribute to the health-promoting effects of exercise. To gain further insights into the molecular processes that occur during contraction an in vitro exercise model, electric pulse stimulation (EPS), was established. Recent publications show that this model is suitable to electro-stimulate human skeletal muscle cells and thus mimic muscle contraction in vitro. Here, we provide a detailed protocol for the proteomics-based analysis of the human muscle secretome, starting with the cultivation of human myotubes and their electric pulse stimulation, ending with sample preparation for targeted and untargeted proteome analysis of the cell culture supernatant. This whole workflow should allow deeper insights into the complex nature of the muscle secretome and the identification of new myokines which might help to understand the crosstalk of the working muscle with different organs and the beneficial effects of exercise.

  8. Analysis of the outer membrane proteome and secretome of Bacteroides fragilis reveals a multiplicity of secretion mechanisms.

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    Marlena M Wilson

    Full Text Available Bacteroides fragilis is a widely distributed member of the human gut microbiome and an opportunistic pathogen. Cell surface molecules produced by this organism likely play important roles in colonization, communication with other microbes, and pathogenicity, but the protein composition of the outer membrane (OM and the mechanisms used to transport polypeptides into the extracellular space are poorly characterized. Here we used LC-MS/MS to analyze the OM proteome and secretome of B. fragilis NCTC 9343 grown under laboratory conditions. Of the 229 OM proteins that we identified, 108 are predicted to be lipoproteins, and 61 are predicted to be TonB-dependent transporters. Based on their proximity to genes encoding TonB-dependent transporters, many of the lipoprotein genes likely encode proteins involved in nutrient or small molecule uptake. Interestingly, protease accessibility and biotinylation experiments indicated that an unusually large fraction of the lipoproteins are cell-surface exposed. We also identified three proteins that are members of a novel family of autotransporters, multiple potential type I protein secretion systems, and proteins that appear to be components of a type VI secretion apparatus. The secretome consisted of lipoproteins and other proteins that might be substrates of the putative type I or type VI secretion systems. Our proteomic studies show that B. fragilis differs considerably from well-studied Gram-negative bacteria such as Escherichia coli in both the spectrum of OM proteins that it produces and the range of secretion strategies that it utilizes.

  9. Control of Meloidogyne javanica and M. arenaria on kenaf and roselle with genetic resistance and nematicides

    Science.gov (United States)

    Minton, N. A.; Adamson, W. C.

    1979-01-01

    Kenaf (Hibiscus cannabinus) and roselle (H. sabdarifla) were evaluated in nematicide-treated and untreated field soil naturally infested with either Meloidogyne javanica or M. arenaria. Root-knot indices indicated that the kenaf breeding line j-l-113 had moderate resistance to M. javanica and low resistance to M. arenaria. Kenaf cv Everglades 71 was highly susceptible to both M. javanica and M. arenaria, and roselle breeding line A59-56 was highly resistant. Both nematode species reproduced on all plant entries, but more larvae were recovered from the soil in plots planted to Everglades 71 than in plots planted to j-l-l13 or A59-56. In untreated soil infested with M. javanica, dry-matter yields were greater (P = 0.05) for j-l-l13 and A59-56 than for Everglades 71. The percentages of live plants at harvest were: j-l-l13, 88; A59-56, 93; and Everglades 71, 9. Ethylene dibromide (1,2-dibromoethane) at 73.9 kg a.i./ha and DBCP (1,2-dibromo-3-chloropropane) at 17.6 kg a.i./ha increased dry-matter yields significantly for all entries planted in soil infested with M. arenaria. Carbofuran (2.3-dihydro-2,2-dimethyl-7-benzofuranyl methylcarbamate) at 5.9 kg a.i./ha did not increase the dry-matter yields of any entry. None of the nematicides increased the growth of any entry significantly in soil infested with M. javanica. PMID:19305526

  10. Pathogenicity of Two Populations of Meloidogyne hapla Chitwood on Alfalfa and Sainfoin.

    Science.gov (United States)

    Wofford, D S; Gray, F A; Eckert, J W

    1989-01-01

    The pathogenicity of two populations of the northern root-knot nematode, Meloidogyne hapla Chitwood, population 1 (P1) from alfalfa and population 2 (P2) from sainfoin, was studied on both alfalfa and sainfoin for 25 weeks. Alfalfa and sainfoin plants inoculated with P2 had significantly (P

  11. How to reduce the number of Meloidogyne paranaensis galls in tomato using earthworms?

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    Jair Alves Dionísio

    2014-02-01

    Full Text Available The objective of the present work was to determine the incidence of Meloidogyne paranaensis galls in the roots of Solanum lycopersicum, after inoculation with Amynthas spp. and Pontoscolex corethrurus. The experiment was performed in the greenhouse in a randomised block experimental design was adopted, with four treatments and five repetitions: T1. M. paranaensis; T2. M. paranaensis + Amynthas spp. T3. M. paranaensis +P. corethrurus; T4. M. paranaensis + Amynthas spp. + P. corethrurus. Initially, six adult worms of Amynthas spp. or P. corethrurus, isolated or in the same proportion (3:3, with the previously determined fresh biomass. After one week, tomato seedlings (cultivar “Rutgers” were transplanted to the pots and inoculated with 5 mL of a suspension of M. paranaensis containing 5,000 eggs and/or juveniles per pot. Sixty-five days after inoculation, the number of remaining worms was counted after manual collection; the fresh biomass was determined by direct weighing, and the number of galls on the roots of the tomato was counted directly in a stereomicroscope. The results demonstrated a reduction in the number of galls per plant with treatments involving inoculation with worms, varying between 26,7% and 63,3%, respectively, for Amynthas spp. and P. corethrurus. Meanwhile, the combination of worms lead to a reduction of 50,0% in the incidence of galls. The results demonstrate that the use of worms in the biological control of nematodes, during tomato cultivation, has great potential that requires further investigation.

  12. HERANÇA DA RESISTÊNCIA DE MILHO A MELOIDOGYNE JAVANICA

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    SAWAZAKI EDUARDO

    1998-01-01

    Full Text Available Duas linhagens de milho, resistente (IAC Ip 365-4-1 e suscetível (IAC Ip 48-5-3 a Meloidogyne javanica, suas gerações F1, F2 e retrocruzamentos, bem como os cruzamentos recíprocos, foram avaliados em dois ensaios em casa de vegetação, em 1989/90 e 1992, em Campinas, para estudar a herança da resistência a M. javanica. Utilizou-se o delineamento inteiramente casualizado com número de repetição maior nas gerações segregantes, parcelas de uma planta por vaso plástico com 500 cm3 de areia fina, previamente tratada com brometo de metila e adubada com NPK. Cinco dias após a germinação das sementes, cada vaso foi inoculado com 5.000 ovos e larvas de M. javanica. Aos 70 e aos 60 dias após a inoculação, respectivamente, nos experimentos 1 e 2, avaliaram-se o índice de massa de ovos, o número de ovos por grama de raiz e o fator de reprodução. Não foram observadas diferenças entre os cruzamentos recíprocos. O comportamento da média do F1, a distribuição de freqüência da população F2 e a segregação monofatorial indicaram que a resistência a M. javanica da linhagem IAC Ip 365-4-1 se deve a um gene dominante associado a um pequeno efeito de polígenes.

  13. Host Suitability of 32 Common Weeds to Meloidogyne hapla in Organic Soils of Southwestern Quebec

    Science.gov (United States)

    Bélair, G.; Benoit, D. L.

    1996-01-01

    Thirty-two weeds commonly found in the organic soils of southwestern Quebec were evaluated for host suitability to a local isolate of the northern root-knot nematode Meloidogyne hapla under greenhouse conditions. Galls were observed on the roots of 21 species. Sixteen of the 21 had a reproduction factor (Pf/Pi = final number of M. hapla eggs and juveniles per initial number of M. hapla juveniles per pot) higher than carrot (Pf/Pi = 0.37), the major host crop in this agricultural area. Tomato cv. Rutgers was also included as a susceptible host and had the highest Pf/Pi value of 13.7. Bidens cernua, B. frondosa, B. vulgata, Erysimum cheiranthoides, Eupatorium maculatum, Matricaria matricarioides, Polygonum scabrum, Thalictrum pubescens, Veronica agrestis, and Sium suave are new host records for M. hapla. Bidens cernua, B. frondosa, B. wulgata, D. carota, M. matricarioides, Pasticana sativa, P. scabrum, S. suave, and Thlaspi arvense sustained moderate to high galling by M. hapla and supported high M. hapla production (12.4 ≤ Pf/Pi ≥ 2.9). Capsella bursa-pastoris, Chrysanthemum leucanthemum, Gnaphalium uliginosum, Stellaria media, and Veronica agrestis sustained moderate galling and supported moderate M. hapla reproduction (2.8 ≤ Pf/Pi ≥ 0.5). Chenopodium album, C. glaucum, E. cheiranthoides, P. convolvulus, Portulaca oleracea, and Rorippa islandica supported low reproduction (0.25 ≤ Pf/Pi ≥ 0.02) and sustained low galling. Galling was observed on Senecio vulgaris but no eggs or juveniles; thus, S. vulgaris may be useful as a trap plant. Eupatorium maculatum, and T. pubescens harbored no distinct galling but supported low to moderate M. hapla reproduction, respectively. Amaranthus retroflexus, Ambrosia artemisiifolia, Echinochloa crusgalli, Erigeron canadensis, Oenothera parviflora, Panicum capillare, Setaria glauca, S. viridis, and Solidago canadensis were nonhosts. Our results demonstrate the importance of adequate weed control in an integrated program

  14. EVALUATION OF THE REACTION OF WATERMELON PARENT AND F1 PLANTS TO Meloidogyne enterolobii

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    LÉIA SANTOS DAMACENO

    2016-01-01

    Full Text Available The aim of this study was to evaluate the performance of progenies from Citrullus lanatus var. lanatus (cultivated watermelons when crossed with progenies from C. lanatus var. citroides (fodder watermelon with a historic of resistance to the nematode Meloidogyne enterolobii. The parents and their F1s were evaluated for resistance to this nematode. In the initial stages of eleven treatments, watermelon seedlings plantlets were transplanted to plastic bags of six kilograms once the first leaves developed. Ten inoculated plants with 5,200 eggs in the soil near the stem of the plant and four non-inoculated ones were used in each treatment, in a complete block design. Sixty-two days after sowing, the following characteristics were evaluated: the length of the aerial part of the plant (LAP, in m, fresh mass of the aerial part (FMAP, in g, root fresh mass (RFM, in g, egg number (EN and reproduction factor (RF. A comparison between the averages of inoculated and non-inoculated plants was performed using Scott-Knott test at 5% and the diallelic analysis was performed using the GENES program. The morphological characteristics did not allow for the identification of the parent plants or the F1s with respect to nematode resistance, but the variables EN and RF were useful for such identification. The analyses of the general and specific combining abilities indicate highly significant effects with respect to this resistance, showing additive gene effects as well as dominance and epistatic gene effects, allowing for identification of parents and F1s that can be used in watermelon breeding programs to improve resistance to the M. enterolobii.

  15. EFECTO DE POBLACIONES DE Meloidogyne sp. EN EL DESARROLLO Y RENDIMIENTO DEL TOMATE

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    Wilber Salazar-Ant\\u00F3n

    2013-01-01

    Full Text Available El objetivo de este trabajo fue determinar el efecto de la población inicial de Meloidogyne sp. en el cultivo del tomate. El estudio se realizó en León, Nicaragua en el año 2011. Las variables medidas fueron número de nematodos al trasplante y al momento de la cosecha, altura de la planta al momento de la madurez fisiológica y el rendimiento en kilogramos. La extracción de nematodos se realizó mediante el método de Baermann modificado. En el estudio, la densidad inicial (Pi presentó una correlación lineal positiva con la densidad final (Pf. Sin embargo, se observó que cuando la Pi era igual a 400 nematodos/100 g de suelo, el factor de reproducción se incrementaba a 3,64; por el contrario, cuando la Pi era igual a 700 nematodos/100 g de suelo, el factor de reproducción se reducía a 2,48. La Pi se correlacionó inversamente con el peso de frutos y altura de las plantas. Plantas con 200 nematodos/100 g de suelo presentaban peso de frutos de 2,19 kg y altura de 153,20 cm en comparación con 0,93 kg y 135,24 cm en plantas con 600 nematodos/100 g de suelo. Existió una correlación positiva entre Pi y Pf de Meloidogy- ne sp. en el tomate. Las poblaciones de este nematodo, se correlacionaron inversamente con las variables altura y peso de los frutos.

  16. On the species status of the root-knot nematode Meloidogyne ulmi Palmisano & Ambrogioni, 2000 (Nematoda, Meloidogynidae

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    Mohammed Ahmed

    2013-12-01

    Full Text Available The root-knot nematode Meloidogyne ulmi is synonymised with Meloidogyne mali based on morphological and morphometric similarities, common hosts, as well as biochemical similarities at both protein and DNA levels. M. mali was first described in Japan on Malus prunifolia Borkh.; and M. ulmi in Italy on Ulmus chenmoui W.C. Cheng. Morphological and morphometric studies of their holo- and paratypes revealed important similarities in the major characters as well as some general variability in a few others. Host test also showed that besides the two species being able to parasitize the type hosts of the other, they share some other common hosts. Our study of the esterase and malate dehydrogenase isozyme phenotypes of some M. ulmi populations gave a perfectly comparable result to that already known for M. mali. Finally, phylogenetic studies of their SSU and LSU rDNA sequence data revealed that the two are not distinguishable at DNA level. All these put together, leave strong evidences to support the fact that M. ulmi is not a valid species, but a junior synonym of M. mali. Brief discussion on the biology and life cycle of M. mali is given. An overview of all known hosts and the possible distribution of M. mali in Europe are also presented.

  17. Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses

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    Wang Tzi-Yuan

    2011-08-01

    Full Text Available Abstract Background Neocallimastix patriciarum is one of the common anaerobic fungi in the digestive tracts of ruminants that can actively digest cellulosic materials, and its cellulases have great potential for hydrolyzing cellulosic feedstocks. Due to the difficulty in culture and lack of a genome database, it is not easy to gain a global understanding of the glycosyl hydrolases (GHs produced by this anaerobic fungus. Results We have developed an efficient platform that uses a combination of transcriptomic and proteomic approaches to N. patriciarum to accelerate gene identification, enzyme classification and application in rice straw degradation. By conducting complementary studies of transcriptome (Roche 454 GS and Illumina GA IIx and secretome (ESI-Trap LC-MS/MS, we identified 219 putative GH contigs and classified them into 25 GH families. The secretome analysis identified four major enzymes involved in rice straw degradation: β-glucosidase, endo-1,4-β-xylanase, xylanase B and Cel48A exoglucanase. From the sequences of assembled contigs, we cloned 19 putative cellulase genes, including the GH1, GH3, GH5, GH6, GH9, GH18, GH43 and GH48 gene families, which were highly expressed in N. patriciarum cultures grown on different feedstocks. Conclusions These GH genes were expressed in Pichia pastoris and/or Saccharomyces cerevisiae for functional characterization. At least five novel cellulases displayed cellulytic activity for glucose production. One β-glucosidase (W5-16143 and one exocellulase (W5-CAT26 showed strong activities and could potentially be developed into commercial enzymes.

  18. Facile synthesis of novel magnetic silica nanoparticles functionalized with layer-by-layer detonation nanodiamonds for secretome study.

    Science.gov (United States)

    Li, Hong; Wang, Yi; Zhang, Lei; Lu, Haojie; Zhou, Zhongjun; Wei, Liming; Yang, Pengyuan

    2015-12-07

    Novel magnetic silica nanoparticles functionalized with layer-by-layer detonation nanodiamonds (dNDs) were prepared by coating single submicron-size magnetite particles with silica and subsequently modified with dNDs. The resulting layer-by-layer dND functionalized magnetic silica microspheres (Fe3O4@SiO2@[dND]n) exhibit a well-defined magnetite-core-silica-shell structure and possess a high content of magnetite, which endow them with high dispersibility and excellent magnetic responsibility. Meanwhile, dNDs are known for their high affinity and biocompatibility towards peptides or proteins. Thus, a novel convenient, fast and efficient pretreatment approach of low-abundance peptides or proteins was successfully established with Fe3O4@SiO2@[dND]n microspheres. The signal intensity of low-abundance peptides was improved by at least two to three orders of magnitude in mass spectrometry analysis. The novel microsphere also showed good tolerance to salt. Even with a high concentration of salt, peptides or proteins could be isolated effectively from samples. Therefore, the convenient and efficient enrichment process of this novel layer-by-layer dND-functionalized microsphere makes it a promising candidate for isolation of protein in a large volume of culture supernatant for secretome analysis. In the application of Fe3O4@SiO2@[dND]n in the secretome of hepatoma cells, 1473 proteins were identified and covered a broad range of pI and molecular weight, including 377 low molecular weight proteins.

  19. Quantitative Secretomic Analysis Identifies Extracellular Protein Factors That Modulate the Metastatic Phenotype of Non-Small Cell Lung Cancer.

    Science.gov (United States)

    Hu, Rongkuan; Huffman, Kenneth E; Chu, Michael; Zhang, Yajie; Minna, John D; Yu, Yonghao

    2016-02-05

    Lung cancer is the leading cause of cancer-related deaths for men and women in the United States, with non-small cell lung cancer (NSCLC) representing 85% of all diagnoses. Late stage detection, metastatic disease and lack of actionable biomarkers contribute to the high mortality rate. Proteins in the extracellular space are known to be critically involved in regulating every stage of the pathogenesis of lung cancer. To investigate the mechanism by which secreted proteins contribute to the pathogenesis of NSCLC, we performed quantitative secretomic analysis of two isogenic NSCLC cell lines (NCI-H1993 and NCI-H2073) and an immortalized human bronchial epithelial cell line (HBEC3-KT) as control. H1993 was derived from a chemo-naïve metastatic tumor, while H2073 was derived from the primary tumor after etoposide/cisplatin therapy. From the conditioned media of these three cell lines, we identified and quantified 2713 proteins, including a series of proteins involved in regulating inflammatory response, programmed cell death and cell motion. Gene Ontology (GO) analysis indicates that a number of proteins overexpressed in H1993 media are involved in biological processes related to cancer metastasis, including cell motion, cell-cell adhesion and cell migration. RNA interference (RNAi)-mediated knock down of a number of these proteins, including SULT2B1, CEACAM5, SPRR3, AGR2, S100P, and S100A14, leads to dramatically reduced migration of these cells. In addition, meta-analysis of survival data indicates NSCLC patients whose tumors express higher levels of several of these secreted proteins, including SULT2B1, CEACAM5, SPRR3, S100P, and S100A14, have a worse prognosis. Collectively, our results provide a potential molecular link between deregulated secretome and NSCLC cell migration/metastasis. In addition, the identification of these aberrantly secreted proteins might facilitate the development of biomarkers for early detection of this devastating disease.

  20. Author Details

    African Journals Online (AJOL)

    friendly management of root-knot nematodes, Meloidogyne incognita on tomato. Abstract PDF · Vol 4, No 3 (2015) - Articles Evaluation of different strains of eri silkworms (Samia cynthia ricini B.) for their adaptability and silk yield in Ethiopia

  1. Nematicide Effect of Various Organic Soil Amendments on Meloidogyne ethiopica Whitehead, 1968, on Potted Vine Plants Efecto Nematicida de Varias Enmiendas Orgánicas Sobre Meloidogyne ethiopica Whitehead, 1968, en Plantas de Vid en Macetas

    Directory of Open Access Journals (Sweden)

    Lucia Rivera

    2008-09-01

    Full Text Available Five organic soil amendments were evaluated for their nematicide effect on root-knot Meloidogyne ethiopica Whitehead, 1968, on potted Vitis vinifera L. var. Chardonnay plants. The amendments included two immature composts: Compost A made with tea (Camellia sinensis (L. Kuntze residues, broiler litter and grape pomace; Compost B made with tea residues, rachis and grape pomace; and separately dried tea residues, grape pomace and broiler litter. These amendments were either incorporated or applied as cover to the substrate in 5 L pots at the beginning of spring. A chemical treatment with the nematicide fenamiphos and a control with substrate only were added for comparisons. The assay was composed of 11 treatments with six replicates, with a grape plant as experimental unit. Seven months later, the assessment of the treatments was carried out based on number of second stage juvenile, nodules, eggs per root gram and reproductive index. Fresh aerial and root plant weight were also measured. The chemical treatment presented the lowest final population of M. ethiopica. When evaluating the nematicide action of the organic amendments: compost A soil-incorporated and both grape pomace and solid dry tea residue as covers obtained low reproductive indexes, similar to the chemical treatment and control (P ≤ 0.05. No differences in aerial fresh weight were determined. However, the chemical treatment showed the smallest root mass as compared to compost B and solid dry tea residues, both as cover.Se realizó un experimento en macetas con plantas enraizadas de Vitis vinífera L. var. Chardonnay para evaluar el efecto nematicida de diferentes enmiendas orgánicas sobre el nematodo agallador Meloidogyne ethiopica Whitehead, 1968. Se usaron dos composts inmaduros: Compost A, elaborado con residuos de té (Camellia sinensis (L. Kuntze, guano de pollo seco y orujo de uva; Compost B, elaborado con residuos de té, escobajo y orujo de uva; y separadamente residuos s

  2. Oxidation of Wine Polyphenols by Secretomes of Wild Botrytis cinerea Strains from White and Red Grape Varieties and Determination of Their Specific Laccase Activity.

    Science.gov (United States)

    Zimdars, Sabrina; Hitschler, Julia; Schieber, Andreas; Weber, Fabian

    2017-12-06

    Processing of Botrytis cinerea-infected grapes leads to enhanced enzymatic browning reactions mainly caused by the enzyme laccase which is able to oxidize a wide range of phenolic compounds. The extent of color deterioration depends on the activity of the enzymes secreted by the fungus. The present study revealed significant differences in the oxidative properties of secretomes of several B. cinerea strains isolated from five grape varieties. The presumed laccase-containing secretomes varied in their catalytic activity toward six phenolic compounds present in grapes. All strains led to identical product profiles for five of six substrates, but two strains showed deviating product profiles during gallic acid oxidation. Fast oxidation of caffeic acid, ferulic acid, and malvidin 3-O-glucoside was observed. Product formation rates and relative product concentrations were determined. The results reflect the wide range of enzyme activity and the corresponding different impact on color deterioration by B. cinerea.

  3. A secretome analysis reveals that PPARα is upregulated by fractionated-dose γ-irradiation in three-dimensional keratinocyte cultures

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Jee Yong; Kim, Hyun Ji; Yi, Jae Youn [Korea Institute of Radiation and Medical Sciences, Daejeon (Korea, Republic of)

    2016-05-15

    A three-dimensional (3D) environment composed of properly interconnected and differentiated cells that allows communication and cooperation among cells via secreted molecules would be expected to more accurately reflect cellular responses. Here, we investigated γ-irradiation-induced changes in the secretome of 3D-cultured keratinocytes. An analysis of keratinocyte secretome profiles following fractionated-dose γ-irradiation revealed changes in genes involved in cell adhesion, angiogenesis, and the immune system. Notably, peroxisome proliferator-activated receptor-(PPARα) was upregulated in response to fractionated-dose γ-irradiation. This upregulation was associated with an increase in the transcription of known PPARα target genes, including angiopoietin-like protein 4, dermokine and kallikrein-related peptide 12, which were differentially regulated by fractionated-dose γ-irradiation. Collectively, our data imply a mechanism linking γ-irradiation and secretome changes, and suggest that these changes could play a significant role in the coordinated cellular responses to harmful ionizing radiation, such as those associated with radiation therapy. This extension of our understanding of γ-irradiation-induced secretome changes has the potential to improve radiation therapy strategies. Control of inflammatory waves, improved wound healing, and stabilization of the skin barrier are imperative for minimizing such injuries. Therefore, PPARα agonists and antagonists have the potential to become important therapeutic agents for the treatment of γ-irradiation induced skin damage. Specifically, our analysis suggests that the undesirable consequences of long-term exposure to ionizing radiation could be alleviated by PPARα agonists.

  4. Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi

    Energy Technology Data Exchange (ETDEWEB)

    Zeiner, Carolyn A.; Purvine, Samuel O.; Zink, Erika M.; Paša-Tolić, Ljiljana; Chaput, Dominique L.; Wu, Si; Santelli, Cara M.; Hansel, Colleen M.

    2017-09-01

    Fungi generate a wide range of extracellular hydrolytic and oxidative enzymes and reactive metabolites, collectively known as the secretome, that synergistically drive plant litter decomposition in the environment. While secretome studies of model organisms have greatly expanded our knowledge of these enzymes, few have extended secretome characterization to environmental isolates or directly compared temporal patterns of enzyme utilization among diverse species. Thus, the mechanisms of carbon (C) degradation by many ubiquitous soil fungi remain poorly understood. Here we use a combination of iTRAQ proteomics and custom bioinformatic analyses to compare the protein composition of the secretomes of four manganese(II)-oxidizing Ascomycete fungi over a three-week time course. We demonstrate that although the fungi produce a similar suite of extracellular enzymes, they exhibit striking differences in the regulation of these enzymes among species and over time, revealing species-specific and temporal shifts in C utilization strategies as they degrade the same substrate. Specifically, our findings suggest that Paraconiothyrium sporulosum AP3s5-JAC2a and Alternaria alternata SRC1lrK2f employ sequential enzyme secretion patterns concomitant with decreasing resource availability, Stagonospora sp. SRC1lsM3a preferentially degrades proteinaceous substrate before switching to carbohydrates, and Pyrenochaeta sp. DS3sAY3a utilizes primarily peptidases to aggressively attack carbon sources in a concentrated burst. This work highlights the diversity of operative metabolic strategies among cellulose-degrading Ascomycetes and enhances our understanding of their role in C turnover in the environment.

  5. Comparative secretome analysis of Trichoderma asperellum S4F8 and Trichoderma reesei Rut C30 during solid-state fermentation on sugarcane bagasse.

    Science.gov (United States)

    Marx, Isa Jacoba; van Wyk, Niël; Smit, Salome; Jacobson, Daniel; Viljoen-Bloom, Marinda; Volschenk, Heinrich

    2013-11-29

    The lignocellulosic enzymes of Trichoderma species have received particular attention with regard to biomass conversion to biofuels, but the production cost of these enzymes remains a significant hurdle for their commercial application. In this study, we quantitatively compared the lignocellulolytic enzyme profile of a newly isolated Trichoderma asperellum S4F8 strain with that of Trichoderma reesei Rut C30, cultured on sugarcane bagasse (SCB) using solid-state fermentation (SSF). Comparison of the lignocellulolytic enzyme profiles of S4F8 and Rut C30 showed that S4F8 had significantly higher hemicellulase and β-glucosidase enzyme activities. Liquid chromatography tandem mass spectrometry analysis of the two fungal secretomes enabled the detection of 815 proteins in total, with 418 and 397 proteins being specific for S4F8 and Rut C30, respectively, and 174 proteins being common to both strains. In-depth analysis of the associated biological functions and the representation of glycoside hydrolase family members within the two secretomes indicated that the S4F8 secretome contained a higher diversity of main and side chain hemicellulases and β-glucosidases, and an increased abundance of some of these proteins compared with the Rut C30 secretome. In SCB SSF, T. asperellum S4F8 produced a more complex lignocellulolytic cocktail, with enhanced hemicellulose and cellobiose hydrolysis potential, compared with T. reesei Rut C30. This bodes well for the development of a more cost-effective and efficient lignocellulolytic enzyme cocktail from T. asperellum for lignocellulosic feedstock hydrolysis.

  6. Evaluation of Cultivars, Experimental Lines and Plant Introduction Collection of Sainfoin for Resistance to Meloidogyne hapla Chitwood.

    Science.gov (United States)

    Wofford, D S; Gray, F A

    1987-01-01

    Stands of several cultivars and experimental lines of sainfoin (Onobrychis viciifolia) were severely reduced (92% average loss) in a field naturally infested with Meloidogyne hapla. Stands of two alfalfa cultivars included in the test were unaffected. In studies conducted in the greenhouse with plants inoculated at the time of seeding, average mortality was 55% for sainfoin entries and 7% for Ladak alfalfa. Little mortality occurred when plants were inoculated after establishment. Three months after inoculation, all sainfoin entries were heavily galled (range of 3.3-3.7 on a scale of 1-4) while roots of Ladak were only slightly galled (rating of 1.6). Intermating of plants selected in the field plots for resistance to M. hapla showed a slight increase in resistance. Of the 147 plant introduction lines tested in the greenhouse, none were resistant to M. hapla.

  7. Crosses prior to parthenogenesis explain the current genetic diversity of tropical plant-parasitic Meloidogyne species (Nematoda: Tylenchida).

    Science.gov (United States)

    Fargette, Mireille; Berthier, Karine; Richaud, Myriam; Lollier, Virginie; Franck, Pierre; Hernandez, Adan; Frutos, Roger

    2010-08-01

    The tropical and subtropical parthenogenetic plant-parasitic nematodes Meloidogyne are polyphagous major agricultural pests. Implementing proper pest management approaches requires a good understanding of mechanisms, population structure, evolutionary patterns and species identification. A comparative analysis of the mitochondrial vs nuclear diversity was conducted on a selected set of Meloidogyne lines from various geographic origins. Mitochondrial co2-16S sequences and AFLP markers of total DNA were applied because of their ability to evidence discrete genetic variation between closely related isolates. Several distinct maternal lineages were present, now associated with different genetic backgrounds. Relative discordances were found when comparing mitochondrial and nuclear diversity patterns. These patterns are most likely related to crosses within one ancestral genetic pool, followed by the establishment of parthenogenesis. In this case, they mirror the genetic backgrounds of the original individuals. Another aspect could be that species emergence was recent or on process from this original genetic pool and that the relatively short time elapsed since then and before parthenogenesis settlement did not allow for lineage sorting. This could also be compatible with the hypothesis of hybrids between closely related species. This genetic pool would correspond to a species as defined by the species interbreeding concept, but also including the grey area of species boundaries. This complex process has implications on the way genotypic and phenotypic diversity should be addressed. The phenotype of parthenogenetic lines is at least for part determined by the ancestral amphimictic genetic background. A direct consequence is, therefore, in terms of risk management, the limited confidence one can have on the direct association of an agronomic threat to a simple typing or species delineation. Risk management strategies and tools must thus consider this complexity when

  8. Characterization of the cellulolytic secretome of Trichoderma harzianum during growth on sugarcane bagasse and analysis of the activity boosting effects of swollenin.

    Science.gov (United States)

    A L Rocha, Vanessa; N Maeda, Roberto; Pereira, Nei; F Kern, Marcelo; Elias, Luisa; Simister, Rachael; Steele-King, Clare; Gómez, Leonardo D; McQueen-Mason, Simon J

    2016-03-01

    This study demonstrates the production of an active enzyme cocktail produced by growing Trichoderma harzianum on sugarcane bagasse. The component enzymes were identified by LCMS-MS. Glycosyl hydrolases were the most abundant class of proteins, representing 67% of total secreted protein. Other carbohydrate active enzymes involved in cell wall deconstruction included lytic polysaccharide mono-oxygenases (AA9), carbohydrate-binding modules, carbohydrate esterases and swollenin, all present at levels of 1%. In total, proteases and lipases represented 5 and 1% of the total secretome, respectively, with the rest of the secretome being made up of proteins of unknown or putative function. This enzyme cocktail was efficient in catalysing the hydrolysis of sugarcane bagasse cellulolignin to fermentable sugars for potential use in ethanol production. Apart from mapping the secretome of T. harzianum, which is a very important tool to understand the catalytic performance of enzyme cocktails, the gene coding for T. harzianum swollenin was expressed in Aspergillus niger. This novel aspect in this work, allowed increasing the swollenin concentration by 95 fold. This is the first report about the heterologous expression of swollenin from T. harzianum, and the findings are of interest in enriching enzyme cocktail with this important accessory protein which takes part in the cellulose amorphogenesis. Despite lacking detectable glycoside activity, the addition of swollenin of T. harzianum increased by two-fold the hydrolysis efficiency of a commercial cellulase cocktail. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:327-336, 2016. © 2016 American Institute of Chemical Engineers.

  9. Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation.

    Science.gov (United States)

    Han, Dohyun; Jin, Jonghwa; Woo, Jongmin; Min, Hophil; Kim, Youngsoo

    2014-07-01

    Astrocytes are the most abundant cells in the CNS, but their function remains largely unknown. Characterization of the whole-cell proteome and secretome in astrocytes would facilitate the study of their functions in various neurodegenerative diseases and astrocyte-neuron communication. To build a reference proteome, we established a C8-D1A astrocyte proteome to a depth of 7265 unique protein groups using a novel strategy that combined two-step digestion, filter-aided sample preparation, StageTip-based high pH fractionation, and high-resolution MS. Nearly, 6000 unique protein groups were identified from conditioned media of astrocyte cultures, constituting the largest astrocyte secretome that has been reported. High-confidence whole-cell proteomes and secretomes are valuable resources in studying astrocyte function by label-free quantitation and bioinformatics analysis. All MS data have been deposited in the ProteomeXchange with identifier PXD000501 (http://proteomecentral.proteomexchange.org/dataset/PXD000501). © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  10. Evaluation of potential bio-control agents on root-knot nematode ...

    African Journals Online (AJOL)

    Tuoyo Aghomotsegin

    2016-05-11

    May 11, 2016 ... nematode, Meloidogyne incognita and Fusarium oxysporum f.sp. conglutinans in vitro. Cell free ... are manifested by the formation of root galls accompanied by stunted growth, chlorosis and loss of viability of the plant (Babu et al., 1999). Fusarium wilt is ... effective bio-control agent on Meloidogyne spp. on.

  11. Integration of Breast Cancer Secretomes with Clinical Data Elucidates Potential Serum Markers for Disease Detection, Diagnosis, and Prognosis.

    Science.gov (United States)

    Ziegler, Yvonne S; Moresco, James J; Yates, John R; Nardulli, Ann M

    2016-01-01

    Cancer cells secrete factors that influence adjacent cell behavior and can lead to enhanced proliferation and metastasis. To better understand the role of these factors in oncogenesis and disease progression, estrogen and progesterone receptor positive MCF-7 cells, triple negative breast cancer MDA-MB-231, DT22, and DT28 cells, and MCF-10A non-transformed mammary epithelial cells were grown in 3D cultures. A special emphasis was placed on triple negative breast cancer since these tumors are highly aggressive and no targeted treatments are currently available. The breast cancer cells secreted factors of variable potency that stimulated proliferation of the relatively quiescent MCF-10A cells. The conditioned medium from each cell line was subjected to mass spectrometry analysis and a variety of secreted proteins were identified including glycolytic enzymes, proteases, protease inhibitors, extracellular matrix proteins, and insulin-like growth factor binding proteins. An investigation of the secretome from each cell line yielded clues about strategies used for breast cancer proliferation and metastasis. Some of the proteins we identified may be useful in the development of a serum-based test for breast cancer detection, diagnosis, prognosis, and monitoring.

  12. Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

    Science.gov (United States)

    Hori, Chiaki; Ishida, Takuya; Igarashi, Kiyohiko; Samejima, Masahiro; Suzuki, Hitoshi; Master, Emma; Ferreira, Patricia; Ruiz-Dueñas, Francisco J.; Held, Benjamin; Canessa, Paulo; Larrondo, Luis F.; Schmoll, Monika; Druzhinina, Irina S.; Kubicek, Christian P.; Gaskell, Jill A.; Kersten, Phil; St. John, Franz; Glasner, Jeremy; Sabat, Grzegorz; Splinter BonDurant, Sandra; Syed, Khajamohiddin; Yadav, Jagjit; Mgbeahuruike, Anthony C.; Kovalchuk, Andriy; Asiegbu, Fred O.; Lackner, Gerald; Hoffmeister, Dirk; Rencoret, Jorge; Gutiérrez, Ana; Sun, Hui; Lindquist, Erika; Barry, Kerrie; Riley, Robert; Grigoriev, Igor V.; Henrissat, Bernard; Kües, Ursula; Berka, Randy M.; Martínez, Angel T.; Covert, Sarah F.; Blanchette, Robert A.; Cullen, Daniel

    2014-01-01

    Collectively classified as white-rot fungi, certain basidiomycetes efficiently degrade the major structural polymers of wood cell walls. A small subset of these Agaricomycetes, exemplified by Phlebiopsis gigantea, is capable of colonizing freshly exposed conifer sapwood despite its high content of extractives, which retards the establishment of other fungal species. The mechanism(s) by which P. gigantea tolerates and metabolizes resinous compounds have not been explored. Here, we report the annotated P. gigantea genome and compare profiles of its transcriptome and secretome when cultured on fresh-cut versus solvent-extracted loblolly pine wood. The P. gigantea genome contains a conventional repertoire of hydrolase genes involved in cellulose/hemicellulose degradation, whose patterns of expression were relatively unperturbed by the absence of extractives. The expression of genes typically ascribed to lignin degradation was also largely unaffected. In contrast, genes likely involved in the transformation and detoxification of wood extractives were highly induced in its presence. Their products included an ABC transporter, lipases, cytochrome P450s, glutathione S-transferase and aldehyde dehydrogenase. Other regulated genes of unknown function and several constitutively expressed genes are also likely involved in P. gigantea's extractives metabolism. These results contribute to our fundamental understanding of pioneer colonization of conifer wood and provide insight into the diverse chemistries employed by fungi in carbon cycling processes. PMID:25474575

  13. Molecular Therapy for Degenerative Disc Disease: Clues from Secretome Analysis of the Notochordal Cell-Rich Nucleus Pulposus

    Science.gov (United States)

    Matta, Ajay; Karim, M. Zia; Isenman, David E.; Erwin, W. Mark

    2017-01-01

    Degenerative disc disease (DDD) is associated with spinal pain often leading to long-term disability. However, the non-chondrodystrophic canine intervertebral disc is protected from the development of DDD, ostensibly due to its retention of notochordal cells (NC) in the nucleus pulposus (NP). In this study, we hypothesized that secretome analysis of the NC-rich NP will lead to the identification of key proteins that delay the onset of DDD. Using mass-spectrometry, we identified 303 proteins including components of TGFβ- and Wnt-signaling, anti-angiogeneic factors and proteins that inhibit axonal ingrowth in the bioactive fractions of serum free, notochordal cell derived conditioned medium (NCCM). Ingenuity Pathway Analysis revealed TGFβ1 and CTGF as major hubs in protein interaction networks. In vitro treatment with TGFβ1 and CTGF promoted the synthesis of healthy extra-cellular matrix proteins, increased cell proliferation and reduced cell death in human degenerative disc NP cells. A single intra-discal injection of recombinant TGFβ1 and CTGF proteins in a pre-clinical rat-tail disc injury model restored the NC and stem cell rich NP. In conclusion, we demonstrate the potential of TGFβ1 and CTGF to mitigate the progression of disc degeneration and the potential use of these molecules in a molecular therapy to treat the degenerative disc. PMID:28358123

  14. The secretome of Trametes versicolor grown on tomato juice medium and purification of the secreted oxidoreductases including a versatile peroxidase.

    Science.gov (United States)

    Carabajal, Maira; Kellner, Harald; Levin, Laura; Jehmlich, Nico; Hofrichter, Martin; Ullrich, René

    2013-10-10

    The present work was carried out with the aim to analyze the secretome of Trametes versicolor BAFC 2234 grown on tomato juice medium supplemented with copper and manganese. T. versicolor BAFC 2234 was selected among diverse wood dwelling agaricomycetes from Argentina by its ability to cause a strong white rot on hardwood and in addition to show high tolerance toward phenolic compounds. A considerable number of the identified proteins were related to the degradation/modification of lignocelluloses. Hydrolases, peroxidases and phenoloxidases were the most abundant enzymes produced under the above-mentioned culture conditions. The lignin-modifying oxidoreductases laccase, manganese peroxidase (MnP) and versatile peroxidase (VP) were successfully purified - the latter for the first time from T. versicolor. The native VP protein has a molecular mass of 45kDa and an isoelectric point of pH 3.7. The study clearly shows that complex plant-based media being rich in phenolics, such as tomato juice, can stimulate the secretion of a broad set of extracellular lignocellulolytic enzymes. Using such natural products as fungal culture media may give the opportunity to investigate plant biomass decomposition as well as the biodegradation of organic pollutants in an environment close to nature. Copyright © 2013 Elsevier B.V. All rights reserved.

  15. Single-cell protein secretomic signatures as potential correlates to tumor cell lineage evolution and cell-cell interaction

    Directory of Open Access Journals (Sweden)

    Minsuk eKwak

    2013-02-01

    Full Text Available Secreted proteins including cytokines, chemokines and growth factors represent important functional regulators mediating a range of cellular behavior and cell-cell paracrine/autocrine signaling, e.g. in the immunological system, tumor microenvironment or stem cell niche. Detection of these proteins is of great value not only in basic cell biology but also for diagnosis and therapeutic monitoring of human diseases such as cancer. However, due to co-production of multiple effector proteins from a single cell, referred to as polyfunctionality, it is biologically informative to measure a panel of secreted proteins, or secretomic signature, at the level of single cells. Recent evidence further indicates that a genetically-identical cell population can give rise to diverse phenotypic differences. It is known that cytokines, for example, in the immune system define the effector functions and lineage differentiation of immune cells. In this Perspective Article, we hypothesize that protein secretion profile may represent a universal measure to identify the definitive correlate in the larger context of cellular functions to dissect cellular heterogeneity and evolutionary lineage relationship in human cancer.

  16. EFECTO NEMATICIDA DE EXTRACTOS DE Quassia amara Y Brugmansia suaveolens SOBRE Meloidogyne sp. ASOCIADO AL TOMATE EN NICARAGUA

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    Wilber Salazar-Ant\\u00F3n

    2014-01-01

    Full Text Available El objetivo de este trabajo fue evaluar extractos de hojas de Quassia amara L. (Simaroubaceae y flores de Brugmansia suaveolens L. (Solanaceae para determinar su efecto nematicida contra Meloidogyne sp. El estudio se realizó en el Campus Agropecuario de la Universidad Nacional Autónoma de Nicaragua-León (UNAN- León en el año 2012. El material vegetal fue deshidratado, pulverizado y sus compuestos fueron extraídos utilizando como solvente metanol. Este estudio se realizó in vitro, se evaluó la mortalidad de los juveniles de Meloidogyne sp. en segundo instar después de 12, 24 y 48 horas de exposición a los extractos. Además, estos se aplicaron a plantas de tomate en maceteras bajo condiciones de invernadero, cuantificándose las poblaciones de nematodos a los 25, 50 y 75 días de exposición al extracto (DEE. En el experimento in vitro Q. amara y B. suaveolens diluidos al 10%, presentaron los más altos porcentajes de mortalidad después de 48 h, alcanzando 89 y 78% de juveniles muertos, respectivamente. En maceteras se evaluó la mortalidad de juveniles, índice de agallamiento (IA y factor de reproducción (FR. Los mejores resultados para Q. amara se obtuvieron a los 25 DEE, con un porcentaje de mortalidad de 80%, un IA de 1 en una escala de 0-5 y FR de 0,20. Con B. suaveolens, a los 25 DEE se alcanzó el mayor porcentaje de mortalidad de 71%, un IA de 1,2 y un FR de 0,29. Estos resultados in vitro y en maceteras evidenciaron que ambos extractos poseen propiedades nematicidas, ya que redujeron significativamente (P≤0,05 las poblaciones de nematodos, su reproducción y el nivel de agallamiento de las raíces de tomate.

  17. Efeito de isolados de Paecilomyces lilacinus no desenvolvimento de cafezais e na população de Meloidogyne paranaensis Effect of isolates of Paecilomyces lilacinus on the development of coffee plantations and on the population of Meloidogyne paranaensis

    Directory of Open Access Journals (Sweden)

    Marina Capparelli Cadioli

    2009-06-01

    Full Text Available Com a finalidade de diminuir as perdas causadas pelos nematóides do gênero Meloidogyne (Goeldi, 1887 na cultura do cafeeiro, dentre as diversas medidas de manejo, o controle biológico com o fungo Paecilomyces lilacinus (Thom., 1910 Samson, 1974 se destaca como uma alternativa de controle vantajosa, quer dos pontos de vista ecológico ou econômico. Assim, neste trabalho, objetivou-se avaliar a eficiência de 10 isolados de Paecilomyces lilacinus no controle de Meloidogyne paranaensis em cafeeiro (Coffea arabica L. cv. Icatú, em casa-de-vegetação. No experimento I, as mudas de cafeeiro foram transplantadas em solo onde foram, anteriormente, cultivados tomateiros para multiplicação de M. paranaensis mais 50 g de arroz colonizado com os 10 isolados. No segundo experimento, mudas de cafeeiro foram transplantadas para substrato solo e areia (1:1 juntamente com 50 g de arroz colonizado com os isolados. Em seguida, as mudas foram inoculadas com ± 5000 ovos de M. paranaensis. Nos dois experimentos, após 15 dias procedeu-se aplicação por cobertura de 50 g dos isolados. O delineamento foi inteiramente casualizado com 12 tratamentos. Após 90 dias, foram feitas as avaliações. Os isolados de P. lilacinus não afetaram o diâmetro do caule de cafeeiro. No experimento I, os isolados Pae 22, 24 e 28 promoveram o crescimento dos cafeeiros; todos os isolados reduziram a população de ovos no sistema radicular; e os isolados Pae 3 e 12 reduziram a população de J2 de M. paranaensis no solo. No experimento II, os isolados Pae 03, 10, 12 e 13 favoreceram o crescimento das plantas, mas reduziram o peso fresco do sistema radicular; todos os isolados reduziram a população de J2 no solo; e os isolados Pae 3, 10, 13, 18, 22 e 24 reduziram as malformações causadas por M. paranaensis nas raízes.In order to reduce the losses caused by nematodes of the genus Meloidogyne (Goeldi, 1887 in coffee plantation, among several management measures, biological

  18. Secretome analysis of Trichoderma reesei and Aspergillus niger cultivated by submerged and sequential fermentation processes: Enzyme production for sugarcane bagasse hydrolysis.

    Science.gov (United States)

    Florencio, Camila; Cunha, Fernanda M; Badino, Alberto C; Farinas, Cristiane S; Ximenes, Eduardo; Ladisch, Michael R

    2016-08-01

    Cellulases and hemicellulases from Trichoderma reesei and Aspergillus niger have been shown to be powerful enzymes for biomass conversion to sugars, but the production costs are still relatively high for commercial application. The choice of an effective microbial cultivation process employed for enzyme production is important, since it may affect titers and the profile of protein secretion. We used proteomic analysis to characterize the secretome of T. reesei and A. niger cultivated in submerged and sequential fermentation processes. The information gained was key to understand differences in hydrolysis of steam exploded sugarcane bagasse for enzyme cocktails obtained from two different cultivation processes. The sequential process for cultivating A. niger gave xylanase and β-glucosidase activities 3- and 8-fold higher, respectively, than corresponding activities from the submerged process. A greater protein diversity of critical cellulolytic and hemicellulolytic enzymes were also observed through secretome analyses. These results helped to explain the 3-fold higher yield for hydrolysis of non-washed pretreated bagasse when combined T. reesei and A. niger enzyme extracts from sequential fermentation were used in place of enzymes obtained from submerged fermentation. An enzyme loading of 0.7 FPU cellulase activity/g glucan was surprisingly effective when compared to the 5-15 times more enzyme loadings commonly reported for other cellulose hydrolysis studies. Analyses showed that more than 80% consisted of proteins other than cellulases whose role is important to the hydrolysis of a lignocellulose substrate. Our work combined proteomic analyses and enzymology studies to show that sequential and submerged cultivation methods differently influence both titers and secretion profile of key enzymes required for the hydrolysis of sugarcane bagasse. The higher diversity of feruloyl esterases, xylanases and other auxiliary hemicellulolytic enzymes observed in the enzyme

  19. Cardiosphere Derived Cells from Pediatric End-Stage Heart Failure Patients Have Enhanced Functional Activity due to the Heat Shock Response Regulating the Secretome

    Science.gov (United States)

    Sharma, Sudhish; Mishra, Rachana; Simpson, David; Wehman, Brody; Colletti, Evan J.; Deshmukh, Savitha; Datla, Srinivasa Raju; Balachandran, Keerti; Guo, Yin; Chen, Ling; Siddiqui, Osama T.; Kaushal, Shalesh; Kaushal, Sunjay

    2016-01-01

    We have demonstrated that human neonatal cardiosphere derived cells (CDCs) derived from the young are more regenerative due to their robust secretome. However, it is unclear how the decompensated pediatric heart impacts the functional activity of their CDCs. Our aim was to characterize the potency of pediatric CDCs derived from normal functioning myocardium of control heart disease (CHD) patients to those generated from age matched end stage heart failure (ESHF) patients and determine the mechanisms involved. ESHF derived CDCs contained a higher number of c-kit+, Islet-1+, and Sca-1+ cells. When transplanted into an infarcted rodent model, ESHF derived CDCs significantly demonstrated higher restoration of ventricular function, prevented adverse remodeling, and enhanced angiogenesis when compared to CHD patients. The superior functional recovery of the ESHF derived CDCs was mediated in part by increased SDF-1α and VEGF-A secretion resulting in augmented recruitment of endogenous stem cells and proliferation of cardiomyocytes. We determined the mechanism is due to the secretome directed by the heat shock response (HSR), which is supported by three lines of evidence. Firstly, gain of function studies demonstrated that increased HSR induced the lower functioning CHD derived CDCs to significantly restore myocardial function. Secondly, loss-of function studies targeting the HSR impaired the ability of the ESHF derived CDCs to functionally recover the injured myocardium. Finally, the native ESHF myocardium had an increased number of c-kit+ CSCs. These findings suggest that the HSR enhances the functional activity of ESHF derived CDCs by increasing their secretome activity, notably SDF-1α and VEGF-A. PMID:25752510

  20. Computational prediction of secretion systems and secretomes of Brucella: identification of novel type IV effectors and their interaction with the host.

    Science.gov (United States)

    Sankarasubramanian, Jagadesan; Vishnu, Udayakumar S; Dinakaran, Vasudevan; Sridhar, Jayavel; Gunasekaran, Paramasamy; Rajendhran, Jeyaprakash

    2016-01-01

    Brucella spp. are facultative intracellular pathogens that cause brucellosis in various mammals including humans. Brucella survive inside the host cells by forming vacuoles and subverting host defence systems. This study was aimed to predict the secretion systems and the secretomes of Brucella spp. from 39 complete genome sequences available in the databases. Furthermore, an attempt was made to identify the type IV secretion effectors and their interactions with host proteins. We predicted the secretion systems of Brucella by the KEGG pathway and SecReT4. Brucella secretomes and type IV effectors (T4SEs) were predicted through genome-wide screening using JVirGel and S4TE, respectively. Protein-protein interactions of Brucella T4SEs with their hosts were analyzed by HPIDB 2.0. Genes coding for Sec and Tat pathways of secretion and type I (T1SS), type IV (T4SS) and type V (T5SS) secretion systems were identified and they are conserved in all the species of Brucella. In addition to the well-known VirB operon coding for the type IV secretion system (T4SS), we have identified the presence of additional genes showing homology with T4SS of other organisms. On the whole, 10.26 to 14.94% of total proteomes were found to be either secreted (secretome) or membrane associated (membrane proteome). Approximately, 1.7 to 3.0% of total proteomes were identified as type IV secretion effectors (T4SEs). Prediction of protein-protein interactions showed 29 and 36 host-pathogen specific interactions between Bos taurus (cattle)-B. abortus and Ovis aries (sheep)-B. melitensis, respectively. Functional characterization of the predicted T4SEs and their interactions with their respective hosts may reveal the secrets of host specificity of Brucella.

  1. Quantitative Proteomic Analysis of Type III Secretome of Enteropathogenic Escherichia coli Reveals an Expanded Effector Repertoire for Attaching/Effacing Bacterial Pathogens*

    Science.gov (United States)

    Deng, Wanyin; Yu, Hong B.; de Hoog, Carmen L.; Stoynov, Nikolay; Li, Yuling; Foster, Leonard J.; Finlay, B. Brett

    2012-01-01

    Type III secretion systems are central to the pathogenesis and virulence of many important Gram-negative bacterial pathogens, and elucidation of the secretion mechanism and identification of the secreted substrates are critical to our understanding of their pathogenic mechanisms and developing potential therapeutics. Stable isotope labeling with amino acids in cell culture-based mass spectrometry is a quantitative and highly sensitive proteomics tool that we have previously used to successfully analyze the type III secretomes of Citrobacter rodentium and Salmonella enterica serovar Typhimurium. In this report, stable isotope labeling with amino acids in cell culture was used to analyze the type III secretome of enteropathogenic Escherichia coli (EPEC), an important human pathogen, which, together with enterohemorrhagic E. coli and C. rodentium, represents the family of attaching and effacing bacterial pathogens. We not only confirmed all 25 known EPEC type III-secreted proteins and effectors previously identified by conventional molecular and bioinformatical techniques but also identified several new type III-secreted proteins, including two novel effectors, C_0814/NleJ and LifA, that were shown to be translocated into host cells. LifA is a known virulence factor believed to act as a toxin as well as an adhesin, but its mechanism of secretion and function is not understood. With a predicted molecular mass of 366 kDa, LifA is the largest type III effector identified thus far in any pathogen. We further demonstrated that Efa1, ToxB, and Z4332 (homologs of LifA in enterohemorrhagic E. coli) are also type III effectors. This study has comprehensively characterized the type III secretome of EPEC, expanded the repertoire of type III-secreted effectors for the attaching and effacing pathogens, and provided new insights into the mode of function for LifA/Efa1/ToxB/Z4332, an important family of virulence factors. PMID:22661456

  2. Secretome Characterization and Correlation Analysis Reveal Putative Pathogenicity Mechanisms and Identify Candidate Avirulence Genes in the Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici.

    Science.gov (United States)

    Xia, Chongjing; Wang, Meinan; Cornejo, Omar E; Jiwan, Derick A; See, Deven R; Chen, Xianming

    2017-01-01

    Stripe (yellow) rust, caused by Puccinia striiformis f. sp. tritici ( Pst ), is one of the most destructive diseases of wheat worldwide. Planting resistant cultivars is an effective way to control this disease, but race-specific resistance can be overcome quickly due to the rapid evolving Pst population. Studying the pathogenicity mechanisms is critical for understanding how Pst virulence changes and how to develop wheat cultivars with durable resistance to stripe rust. We re-sequenced 7 Pst isolates and included additional 7 previously sequenced isolates to represent balanced virulence/avirulence profiles for several avirulence loci in seretome analyses. We observed an uneven distribution of heterozygosity among the isolates. Secretome comparison of Pst with other rust fungi identified a large portion of species-specific secreted proteins, suggesting that they may have specific roles when interacting with the wheat host. Thirty-two effectors of Pst were identified from its secretome. We identified candidates for Avr genes corresponding to six Yr genes by correlating polymorphisms for effector genes to the virulence/avirulence profiles of the 14 Pst isolates. The putative AvYr76 was present in the avirulent isolates, but absent in the virulent isolates, suggesting that deleting the coding region of the candidate avirulence gene has produced races virulent to resistance gene Yr76 . We conclude that incorporating avirulence/virulence phenotypes into correlation analysis with variations in genomic structure and secretome, particularly presence/absence polymorphisms of effectors, is an efficient way to identify candidate Avr genes in Pst . The candidate effector genes provide a rich resource for further studies to determine the evolutionary history of Pst populations and the co-evolutionary arms race between Pst and wheat. The Avr candidates identified in this study will lead to cloning avirulence genes in Pst , which will enable us to understand molecular mechanisms

  3. Quantitative proteomic analysis of type III secretome of enteropathogenic Escherichia coli reveals an expanded effector repertoire for attaching/effacing bacterial pathogens.

    Science.gov (United States)

    Deng, Wanyin; Yu, Hong B; de Hoog, Carmen L; Stoynov, Nikolay; Li, Yuling; Foster, Leonard J; Finlay, B Brett

    2012-09-01

    Type III secretion systems are central to the pathogenesis and virulence of many important Gram-negative bacterial pathogens, and elucidation of the secretion mechanism and identification of the secreted substrates are critical to our understanding of their pathogenic mechanisms and developing potential therapeutics. Stable isotope labeling with amino acids in cell culture-based mass spectrometry is a quantitative and highly sensitive proteomics tool that we have previously used to successfully analyze the type III secretomes of Citrobacter rodentium and Salmonella enterica serovar Typhimurium. In this report, stable isotope labeling with amino acids in cell culture was used to analyze the type III secretome of enteropathogenic Escherichia coli (EPEC), an important human pathogen, which, together with enterohemorrhagic E. coli and C. rodentium, represents the family of attaching and effacing bacterial pathogens. We not only confirmed all 25 known EPEC type III-secreted proteins and effectors previously identified by conventional molecular and bioinformatical techniques but also identified several new type III-secreted proteins, including two novel effectors, C_0814/NleJ and LifA, that were shown to be translocated into host cells. LifA is a known virulence factor believed to act as a toxin as well as an adhesin, but its mechanism of secretion and function is not understood. With a predicted molecular mass of 366 kDa, LifA is the largest type III effector identified thus far in any pathogen. We further demonstrated that Efa1, ToxB, and Z4332 (homologs of LifA in enterohemorrhagic E. coli) are also type III effectors. This study has comprehensively characterized the type III secretome of EPEC, expanded the repertoire of type III-secreted effectors for the attaching and effacing pathogens, and provided new insights into the mode of function for LifA/Efa1/ToxB/Z4332, an important family of virulence factors.

  4. Improved structural annotation of protein-coding genes in the Meloidogyne hapla genome using RNA-Seq

    Science.gov (United States)

    Guo, Yuelong; Bird, David McK; Nielsen, Dahlia M

    2014-01-01

    As high-throughput cDNA sequencing (RNA-Seq) is increasingly applied to hypothesis-driven biological studies, the prediction of protein coding genes based on these data are usurping strictly in silico approaches. Compared with computationally derived gene predictions, structural annotation is more accurate when based on biological evidence, particularly RNA-Seq data. Here, we refine the current genome annotation for the Meloidogyne hapla genome utilizing RNA-Seq data. Published structural annotation defines 14 420 protein-coding genes in the M. hapla genome. Of these, 25% (3751) were found to exhibit some incongruence with RNA-Seq data. Manual annotation enabled these discrepancies to be resolved. Our analysis revealed 544 new gene models that were missing from the prior annotation. Additionally, 1457 transcribed regions were newly identified on the ends of as-yet-unjoined contigs. We also searched for trans-spliced leaders, and based on RNA-Seq data, identified genes that appear to be trans-spliced. Four 22-bp trans-spliced leaders were identified using our pipeline, including the known trans-spliced leader, which is the M. hapla ortholog of SL1. In silico predictions of trans-splicing were validated by comparison with earlier results derived from an independent cDNA library constructed to capture trans-spliced transcripts. The new annotation, which we term HapPep5, is publically available at www.hapla.org. PMID:25254153

  5. Application of Arbuscular Mycorrhizal Fungi during the Acclimatization of Alpinia purpurata to Induce Tolerance to Meloidogyne arenaria

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    Maryluce Albuquerque da Silva Campos

    2017-06-01

    Full Text Available An experiment was conducted to evaluate the tolerance of micropropagated and mycorrhized alpinia plants to the parasite Meloidogyne arenaria. The experimental design was completely randomized with a factorial arrangement of four inoculation treatments with arbuscular mycorrhizal fungi (AMF (Gigaspora albida, Claroideoglomus etunicatum, Acaulospora longula, and a non-inoculated control in the presence or absence of M. arenaria with five replicates. The following characteristics were evaluated after 270 days of mycorrhization and 170 days of M. arenaria inoculation: height, number of leaves and tillers, fresh mass of aerial and subterranean parts, dry mass of aerial parts, foliar area, nutritional content, mycorrhizal colonization, AMF sporulation, and the number of galls, egg masses, and eggs. The results indicated a significant interaction between the treatments for AMF spore density, total mycorrhizal colonization, and nutrient content (Zn, Na, and N, while the remaining parameters were influenced by either AMF or nematodes. Plants inoculated with A. longula or C. etunicatum exhibited greater growth than the control. Lower N content was observed in plants inoculated with AMF, while Zn and Na were found in larger quantities in plants inoculated with C. etunicatum. Fewer galls were observed on mycorrhized plants, and egg mass production and the number of eggs were lower in plants inoculated with G. albida. Plants inoculated with A. longula showed a higher percentage of total mycorrhizal colonization in the presence of the nematode. Therefore, the association of micropropagated alpinia plants and A. longula enhanced tolerance to parasitism by M. arenaria.

  6. Reduction of root-knot nematode, Meloidogyne javanica, and ozone mass transfer in soil treated with ozone.

    Science.gov (United States)

    Qiu, Jinya Jack; Westerdahl, Becky B; Pryor, Alan

    2009-09-01

    Ozone gas (O₃) is a reactive oxidizing agent with biocidal properties. Because of the current phasing out of methyl bromide, investigations on the use of ozone gas as a soil-fumigant were conducted. Ozone gas was produced at a concentration of 1% in air by a conventional electrical discharge O₃ generator. Two O₃ dosages and three gas flow rates were tested on a sandy loam soil collected from a tomato field that had a resident population of root knot nematodes, Meloidogyne javanica. At dosages equivalent to 50 and 250 kg of O₃/ha, M. javanica were reduced by 24% and 68%, and free-living nematodes by 19% and 52%, respectively. The reduction for both M. javanica and free-living nematodes was dosage dependent and flow rate independent. The rates of O₃ mass transfer (OMT) through three soils of different texture were greater at low and high moisture levels than at intermediate ones. At any one soil moisture level, the OMT rate varied with soil texture and soil organic matter content. Results suggest that soil texture, moisture, and organic matter content should be considered in determining O₃ dosage needed for effective nematode control.

  7. Understanding the interaction between an obligate hyperparasitic bacterium, Pasteuria penetrans and its obligate plant-parasitic nematode host, Meloidogyne spp.

    Science.gov (United States)

    Davies, Keith G

    2009-01-01

    Pasteuria penetrans is an endospore-forming bacterium, which is a hyperparasite of root-knot nematodes Meloidogyne spp. that are economically important pests of a wide range of crops. The life cycle of the bacterium and nematode are described with emphasis on the bacterium's potential as a biocontrol agent. Two aspects that currently prohibit the commercial development of the bacterium as a biocontrol agent are the inability to culture it outside its host and its host specificity. Vegetative growth of the bacterium is possible in vitro; however, getting the vegetative stages of the bacterium to enter sporogenesis has been problematic. Insights from genomic survey sequences regarding the role of cation concentration and the phosphorylation of Spo0F have proved useful in inducing vegetative bacteria to sporulate. Similarly, genomic data have also proved useful in understanding the attachment of endospores to the cuticle of infective nematode juveniles, and a Velcro-like model of spore attachment is proposed that involves collagen-like fibres on the surface of the endospore interacting with mucins on the nematode cuticle. Ecological studies of the interactions between Daphnia and Pasteuria ramosa are examined and similarities are drawn between the co-evolution of virulence in the Daphnia system and that of plant-parasitic nematodes.

  8. Pochonia chlamydosporia var. chlamydosporia (Goddard Zare & W. Gams for the management of lettuce infected with Meloidogyne javanica (Treub, 1885

    Directory of Open Access Journals (Sweden)

    José R Viggiano

    2015-06-01

    Full Text Available The application of the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia (Goddard Zare & W. Gams during seedling production of vegetable crops can be an efficient approach to control root-knot nematode. The aim of this study was to evaluate the effect of treating seedlings and/or soil with bionematicide (wettable powder formulation based on chlamydospores from isolate Pc-10 on the Meloidogyne javanica (Treub, 1885 control in lettuce (Lactuca sativa L.. Isolate Pc-10 was diluted in water and applied when watering the seedlings (0, 4.5, 9.0, 13.5, and 18.0 g L-1 and/or to the potted soil (5000 chlamydospores g-1 used for growing lettuce. The soil in each pot was infested with 3000 M. javanica eggs. The number of M. javanica eggs was reduced in lettuce roots when isolate Pc-10 was applied either to seedlings or soil; there was no interaction between application methods. The decrease in the number of eggs was proportional to the increase of isolate Pc-10 applied to seedlings with maximum reduction of 43.5% at the 18 g L-1 dose. When the fungus was applied to the soil, the number of eggs was reduced by 12.3%. Increasing doses of isolate Pc-10 reduced the number of galls up to 21% with the 18 g L-1 dose. Applying bionematicide based on P. chlamydosporia isolate Pc-10 at 18 g L-1 on seedlings controls M. javanica in lettuce.

  9. Genetic Mapping of Resistance to Meloidogyne arenaria in Arachis stenosperma: A New Source of Nematode Resistance for Peanut

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    Soraya C. M. Leal-Bertioli

    2016-02-01

    Full Text Available Root-knot nematodes (RKN; Meloidogyne sp. are a major threat to crops in tropical and subtropical regions worldwide. The use of resistant crop varieties is the preferred method of control because nematicides are expensive, and hazardous to humans and the environment. Peanut (Arachis hypogaea is infected by four species of RKN, the most damaging being M. arenaria, and commercial cultivars rely on a single source of resistance. In this study, we genetically characterize RKN resistance of the wild Arachis species A. stenosperma using a population of 93 recombinant inbred lines developed from a cross between A. duranensis and A. stenosperma. Four quantitative trait loci (QTL located on linkage groups 02, 04, and 09 strongly influenced nematode root galling and egg production. Drought-related, domestication and agronomically relevant traits were also evaluated, revealing several QTL. Using the newly available Arachis genome sequence, easy-to-use KASP (kompetitive allele specific PCR markers linked to the newly identified RKN resistance loci were developed and validated in a tetraploid context. Therefore, we consider that A. stenosperma has high potential as a new source of RKN resistance in peanut breeding programs.

  10. OPDA has key role in regulating plant susceptibility to the root-knot nematode Meloidogyne hapla in Arabidopsis

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    Cynthia Gleason

    2016-10-01

    Full Text Available Jasmonic acid (JA is a plant hormone that plays important roles in regulating plant defenses against necrotrophic pathogens and herbivorous insects, but the role of JA in mediating the plant responses to root-knot nematodes has been unclear. Here we show that an application of either methyl jasmonate (MeJA or the JA-mimic coronatine (COR on Arabidopsis significantly reduced the number of galls caused by the root-knot nematode Meloidogyne hapla. Interestingly, the MeJA-induced resistance was independent of the JA-receptor COI1 (CORONATINE INSENSITIVE 1. The MeJA-treated plants accumulated the JA precursor cis-(+-12-oxo-phytodienoic acid (OPDA in addition to JA/JA-Isoleucine, indicating a positive feedback loop in JA biosynthesis. Using mutants in the JA-biosynthetic pathway, we found that plants deficient in the biosynthesis of JA and OPDA were hyper-susceptible to M. hapla. However, the opr3 mutant, which cannot convert OPDA to JA, exhibited wild-type levels of nematode galling. In addition, mutants in the JA-biosynthesis and perception which lie downstream of opr3 also displayed wild-type levels of galling. The data puts OPR3 (OPDA reductase 3 as the branch point between hyper-susceptibility and wild-type like levels of disease. Overall, the data suggests that the JA precursor, OPDA, plays a role in regulating plant defense against nematodes.

  11. A novel Meloidogyne enterolobii effector MeTCTP promotes parasitism by suppressing programmed cell death in host plants.

    Science.gov (United States)

    Zhuo, Kan; Chen, Jiansong; Lin, Borong; Wang, Jing; Sun, Fengxia; Hu, Lili; Liao, Jinling

    2017-01-01

    Meloidogyne enterolobii is one of the most important plant-parasitic nematodes that can overcome the Mi-1 resistance gene and damage many economically important crops. Translationally controlled tumour protein (TCTP) is a multifunctional protein that exists in various eukaryotes and plays an important role in parasitism. In this study, a novel M. enterolobii TCTP effector, named MeTCTP, was identified and functionally characterized. MeTCTP was specifically expressed within the dorsal gland and was up-regulated during M. enterolobii parasitism. Transient expression of MeTCTP in protoplasts from tomato roots showed that MeTCTP was localized in the cytoplasm of the host cells. Transgenic Arabidopsis thaliana plants overexpressing MeTCTP were more susceptible to M. enterolobii infection than wild-type plants in a dose-dependent manner. By contrast, in planta RNA interference (RNAi) targeting MeTCTP suppressed the expression of MeTCTP in infecting nematodes and attenuated their parasitism. Furthermore, MeTCTP could suppress programmed cell death triggered by the pro-apoptotic protein BAX. These results demonstrate that MeTCTP is a novel plant-parasitic nematode effector that promotes parasitism, probably by suppressing programmed cell death in host plants. © 2016 BSPP and John Wiley & Sons Ltd.

  12. Reação de clones de umezeiro (Prunus mume sieb. et zucc. e cultivares de pessegueiro a Meloidogyne javanica (treub, 1885 Chitwood, 1949

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    Mayer Newton Alex

    2003-01-01

    Full Text Available Um amplo projeto de estudos sobre a utilização do umezeiro como porta-enxerto para pessegueiro está sendo desenvolvido na FCAV/UNESP, Câmpus de Jaboticabal-SP, devido, especialmente, às promissoras características para uso como redutor de vigor da copa e sua boa qualidade de frutos. Alguns trabalhos na literatura citam o umezeiro como resistente ao nematóide das galhas, entretanto dispõe-se de poucas informações. Neste trabalho, teve-se por objetivo estudar a reação de clones de umezeiro e cultivares de pessegueiro a Meloidogyne javanica. O experimento foi conduzido em casa de vegetação, com 6 tratamentos (Clones 05; 10 e 15 de umezeiro e as cultivares Okinawa, Aurora-1 e Dourado-1 de pessegueiro e 9 repetições. As plantas foram mantidas em vasos de cerâmica contendo uma mistura de solo e areia (1:1, v/v, previamente autoclavada a 121ºC e 1kgf.cm-2 por 2 horas. Aos sessenta dias após o plantio, cada planta foi inoculada com 3.000 ovos e juvenis de segundo estádio de Meloidogyne javanica. Aos 100 dias após a inoculação, as plantas foram colhidas para avaliação da massa de matéria fresca do sistema radicular, número de galhas por sistema radicular, número de ovos e juvenis por 10 g de raízes, número de ovos e juvenis por sistema radicular e fator de reprodução. Verificou-se que todos os clones e cultivares de umezeiro e pessegueiro, respectivamente, mostraram-se resistentes a Meloidogyne javanica.

  13. Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by Piper betel derived compounds.

    Directory of Open Access Journals (Sweden)

    Debmalya Barh

    Full Text Available Vibrio cholerae is the causal organism of the cholera epidemic, which is mostly prevalent in developing and underdeveloped countries. However, incidences of cholera in developed countries are also alarming. Because of the emergence of new drug-resistant strains, even though several generic drugs and vaccines have been developed over time, Vibrio infections remain a global health problem that appeals for the development of novel drugs and vaccines against the pathogen. Here, applying comparative proteomic and reverse vaccinology approaches to the exoproteome and secretome of the pathogen, we have identified three candidate targets (ompU, uppP and yajC for most of the pathogenic Vibrio strains. Two targets (uppP and yajC are novel to Vibrio, and two targets (uppP and ompU can be used to develop both drugs and vaccines (dual targets against broad spectrum Vibrio serotypes. Using our novel computational approach, we have identified three peptide vaccine candidates that have high potential to induce both B- and T-cell-mediated immune responses from our identified two dual targets. These two targets were modeled and subjected to virtual screening against natural compounds derived from Piper betel. Seven compounds were identified first time from Piper betel to be highly effective to render the function of these targets to identify them as emerging potential drugs against Vibrio. Our preliminary validation suggests that these identified peptide vaccines and betel compounds are highly effective against Vibrio cholerae. Currently we are exhaustively validating these targets, candidate peptide vaccines, and betel derived lead compounds against a number of Vibrio species.

  14. Genome, transcriptome, and secretome analysis of wood decay fungus postia placenta supports unique mechanisms of lignocellulose conversion

    Energy Technology Data Exchange (ETDEWEB)

    Martinez, Diego [Los Alamos National Laboratory; Challacombe, Jean F [Los Alamos National Laboratory; Misra, Monica [Los Alamos National Laboratory; Xie, Gary [Los Alamos National Laboratory; Brettin, Thomas [Los Alamos National Laboratory; Morgenstern, Ingo [CLARK UNIV; Hibbett, David [CLARK UNIV.; Schmoll, Monika [UNIV WIEN; Kubicek, Christian P [UNIV WIEN; Ferreira, Patricia [CIB, CSIC, MADRID; Ruiz - Duenase, Francisco J [CIB, CSIC, MADRID; Martinez, Angel T [CIB, CSIC, MADRID; Kersten, Phil [FOREST PRODUCTS LAB; Hammel, Kenneth E [FOREST PRODUCTS LAB; Vanden Wymelenberg, Amber [U. WISCONSIN; Gaskell, Jill [FOREST PRODUCTS LAB; Lindquist, Erika [DOE JGI; Sabati, Grzegorz [U. WISCONSIN; Bondurant, Sandra S [U. WISCONSIN; Larrondo, Luis F [U. CATHOLICA DE CHILE; Canessa, Paulo [U. CATHOLICA DE CHILE; Vicunna, Rafael [U. CATHOLICA DE CHILE; Yadavk, Jagiit [U. CINCINATTI; Doddapaneni, Harshavardhan [U. CINCINATTI; Subramaniank, Venkataramanan [U. CINCINATTI; Pisabarro, Antonio G [PUBLIC U. NAVARRE; Lavin, Jose L [PUBLIC U. NAVARRE; Oguiza, Jose A [PUBLIC U. NAVARRE; Master, Emma [U. TORONTO; Henrissat, Bernard [CNRS, MARSEILLE; Coutinho, Pedro M [CNRS, MARSEILLE; Harris, Paul [NOVOZYMES, INC.; Magnuson, Jon K [PNNL; Baker, Scott [PNNL; Bruno, Kenneth [PNNL; Kenealy, William [MASCOMA, INC.; Hoegger, Patrik J [GEORG-AUGUST-U.; Kues, Ursula [GEORG-AUGUST-U; Ramaiva, Preethi [NOVOZYMES, INC.; Lucas, Susan [DOE JGI; Salamov, Asaf [DOE JGI; Shapiro, Harris [DOE JGI; Tuh, Hank [DOE JGI; Chee, Christine L [UNM; Teter, Sarah [NOVOZYMES, INC.; Yaver, Debbie [NOVOZYMES, INC.; James, Tim [MCMASTER U.; Mokrejs, Martin [CHARLES U.; Pospisek, Martin [CHARLES U.; Grigoriev, Igor [DOE JGI; Rokhsar, Dan [DOE JGI; Berka, Randy [NOVOZYMES; Cullen, Dan [FOREST PRODUCTS LAB

    2008-01-01

    Brown-rot fungi such as Postia placenta are common inhabitants of forest ecosystems and are also largely responsible for the destructive decay of wooden structures. Rapid depolymerization of cellulose is a distinguishing feature of brown-rot, but the biochemical mechanisms and underlying genetics are poorly understood. Systematic examination of the P. placenta genome, transcriptome and secretome revealed unique extracellular enzyme systems, including an unusual repertoire of extracellular glycoside hydrolases. Genes encoding exocellobiohydrolases and cellulose-binding domains, typical of cellulolytic microbes, are absent in this efficient cellulose-degrading fungus. When P. placenta was grown in medium containing cellulose as sole carbon source, transcripts corresponding to many hemicellulases and to a single putative {beta}-1-4 endoglucanase were expressed at high levels relative to glucose grown cultures. These transcript profiles were confirmed by direct identification of peptides by liquid chromatography-tandem mass spectrometry (LC{center_dot}MSIMS). Also upregulated during growth on cellulose medium were putative iron reductases, quinone reductase, and structurally divergent oxidases potentially involved in extracellular generation of Fe(II) and H202. These observations are consistent with a biodegradative role for Fenton chemistry in which Fe(II) and H202 react to form hydroxyl radicals, highly reactive oxidants capable of depolymerizing cellulose. The P. placenta genome resources provide unparalleled opportunities for investigating such unusual mechanisms of cellulose conversion. More broadly, the genome offers insight into the diversification of lignocellulose degrading mechanisms in fungi. Comparisons to the closely related white-rot fungus Phanerochaete chrysosporium support an evolutionary shift from white-rot to brown-rot during which the capacity for efficient depolymerization of lignin was lost.

  15. Impact of the lectin chaperone calnexin on the stress response, virulence and proteolytic secretome of the fungal pathogen Aspergillus fumigatus.

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    Margaret V Powers-Fletcher

    Full Text Available Calnexin is a membrane-bound lectin chaperone in the endoplasmic reticulum (ER that is part of a quality control system that promotes the accurate folding of glycoproteins entering the secretory pathway. We have previously shown that ER homeostasis is important for virulence of the human fungal pathogen Aspergillus fumigatus, but the contribution of calnexin has not been explored. Here, we determined the extent to which A. fumigatus relies on calnexin for growth under conditions of environmental stress and for virulence. The calnexin gene, clxA, was deleted from A. fumigatus and complemented by reconstitution with the wild type gene. Loss of clxA altered the proteolytic secretome of the fungus, but had no impact on growth rates in either minimal or complex media at 37°C. However, the ΔclxA mutant was growth impaired at temperatures above 42°C and was hypersensitive to acute ER stress caused by the reducing agent dithiothreitol. In contrast to wild type A. fumigatus, ΔclxA hyphae were unable to grow when transferred to starvation medium. In addition, depleting the medium of cations by chelation prevented ΔclxA from sustaining polarized hyphal growth, resulting in blunted hyphae with irregular morphology. Despite these abnormal stress responses, the ΔclxA mutant remained virulent in two immunologically distinct models of invasive aspergillosis. These findings demonstrate that calnexin functions are needed for growth under conditions of thermal, ER and nutrient stress, but are dispensable for surviving the stresses encountered in the host environment.

  16. Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut

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    O’Brien Heath E

    2012-07-01

    Full Text Available Abstract Background Hazelnut (Corylus avellana decline disease in Greece and Italy is caused by the convergent evolution of two distantly related lineages of Pseudomonas syringae pv. avellanae (Pav. We sequenced the genomes of three Pav isolates to determine if their convergent virulence phenotype had a common genetic basis due to either genetic exchange between lineages or parallel evolution. Results We found little evidence for horizontal transfer (recombination of genes between Pav lineages, but two large genomic islands (GIs have been recently acquired by one of the lineages. Evolutionary analyses of the genes encoding type III secreted effectors (T3SEs that are translocated into host cells and are important for both suppressing and eliciting defense responses show that the two Pav lineages have dramatically different T3SE profiles, with only two shared putatively functional T3SEs. One Pav lineage has undergone unprecedented secretome remodeling, including the acquisition of eleven new T3SEs and the loss or pseudogenization of 15, including five of the six core T3SE families that are present in the other Pav lineage. Molecular dating indicates that divergence within both of the Pav lineages predates their observation in the field. This suggest that both Pav lineages have been cryptically infecting hazelnut trees or wild relatives for many years, and that the emergence of hazelnut decline in the 1970s may have been due to changes in agricultural practice. Conclusions These data show that divergent lineages of P. syringae can converge on identical disease etiology on the same host plant using different virulence mechanisms and that dramatic shifts in the arsenal of T3SEs can accompany disease emergence.

  17. Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome

    Science.gov (United States)

    Abdi, Abdirahman; Yu, Lu; Goulding, David; Rono, Martin K.; Bejon, Philip; Choudhary, Jyoti; Rayner, Julian

    2017-01-01

    Background: Many pathogens secrete effector molecules to subvert host immune responses, to acquire nutrients, and/or to prepare host cells for invasion. One of the ways that effector molecules are secreted is through extracellular vesicles (EVs) such as exosomes. Recently, the malaria parasite P. falciparum has been shown to produce EVs that can mediate transfer of genetic material between parasites and induce sexual commitment. Characterizing the content of these vesicles may improve our understanding of P. falciparum pathogenesis and virulence. Methods: Previous studies of P. falciparum EVs have been limited to long-term adapted laboratory isolates. In this study, we isolated EVs from a Kenyan P. falciparum clinical isolate that had been adapted to in vitro culture for a relatively shorter period, and characterized their protein content by mass spectrometry (data are available via ProteomeXchange, with identifier PXD006925). Results: We show that P. falciparum extracellular vesicles ( PfEVs) are enriched in proteins found within the exomembrane compartments of infected erythrocytes such as Maurer’s clefts (MCs), as well as the secretory endomembrane compartments in the apical end of the merozoites, suggesting that PfEVs may play a role in parasite-host interactions. Comparison of this dataset with previously published datasets helps to define a core secretome present in PfEVs. Conclusions: P. falciparum extracellular vesicles contain virulence-associated parasite proteins. Analysis of PfEVs contents from a range of clinical isolates, and their functional validation may improve our understanding of the virulence mechanisms of the parasite, and potentially identify new targets for interventions or diagnostics. PMID:28944300

  18. Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut.

    Science.gov (United States)

    O'Brien, Heath E; Thakur, Shalabh; Gong, Yunchen; Fung, Pauline; Zhang, Jianfeng; Yuan, Lijie; Wang, Pauline W; Yong, Choseung; Scortichini, Marco; Guttman, David S

    2012-07-16

    Hazelnut (Corylus avellana) decline disease in Greece and Italy is caused by the convergent evolution of two distantly related lineages of Pseudomonas syringae pv. avellanae (Pav). We sequenced the genomes of three Pav isolates to determine if their convergent virulence phenotype had a common genetic basis due to either genetic exchange between lineages or parallel evolution. We found little evidence for horizontal transfer (recombination) of genes between Pav lineages, but two large genomic islands (GIs) have been recently acquired by one of the lineages. Evolutionary analyses of the genes encoding type III secreted effectors (T3SEs) that are translocated into host cells and are important for both suppressing and eliciting defense responses show that the two Pav lineages have dramatically different T3SE profiles, with only two shared putatively functional T3SEs. One Pav lineage has undergone unprecedented secretome remodeling, including the acquisition of eleven new T3SEs and the loss or pseudogenization of 15, including five of the six core T3SE families that are present in the other Pav lineage. Molecular dating indicates that divergence within both of the Pav lineages predates their observation in the field. This suggest that both Pav lineages have been cryptically infecting hazelnut trees or wild relatives for many years, and that the emergence of hazelnut decline in the 1970s may have been due to changes in agricultural practice. These data show that divergent lineages of P. syringae can converge on identical disease etiology on the same host plant using different virulence mechanisms and that dramatic shifts in the arsenal of T3SEs can accompany disease emergence.

  19. Characterization of the secretome of human tooth germ stem cells (hTGSCs) reveals neuro-protection by fine-tuning micro-environment.

    Science.gov (United States)

    Yalvaç, Mehmet Emir; Yarat, Aysen; Mercan, Dilek; Rizvanov, Albert A; Palotás, András; Şahin, Fikrettin

    2013-08-01

    Bone-marrow-derived mesenchymal stem cells (MSCs) demonstrate neuro-protective effects in several disease models. By producing growth-factors, cytokines and chemokines, they promote survival of neurons in damaged brain areas. Alternative MSC sources, such as human tooth germ stem cells (hTGSCs), have been investigated for their neuro-protective properties. They ameliorate effects of neuro-toxic agents by paracrine mechanisms, however these secreted bio-active molecules are not yet characterized. Therefore, the current study aimed to provide a detailed analysis of the secretome of hTGSCs. Brain cells were exposed to various toxic materials, including Alzheimer's β-amyloid peptide (β-AP) and 6-hydroxy-dopamine (6-OHDA). When co-cultured with hTGSCs, the activity of a number of anti-oxidant enzymes (catalase, glutathione-s-transferase, glutathione-peroxidase, superoxide-dismutase) was increased and neuronal death/apoptosis was subsequently reduced. The composition of the secreted bio-active materials is influenced by various pre-existing factors such as oxygen and glucose deprivation and the age of cells (passage number). This report reveals for the first time that the neuro-protective secretome of hTGSCs and the micro-environment of cells have a mutual and dynamic impact on one another. Copyright © 2013 Elsevier Inc. All rights reserved.

  20. Bone Marrow Stromal Antigen 2 Is a Novel Plasma Biomarker and Prognosticator for Colorectal Carcinoma: A Secretome-Based Verification Study

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    Sum-Fu Chiang

    2015-01-01

    Full Text Available Background. The cancer cell secretome has been recognized as a valuable reservoir for identifying novel serum/plasma biomarkers for different cancers, including colorectal cancer (CRC. This study aimed to verify four CRC cell-secreted proteins (tumor-associated calcium signal transducer 2/trophoblast cell surface antigen 2 (TACSTD2/TROP2, tetraspanin-6 (TSPAN6, bone marrow stromal antigen 2 (BST2, and tumor necrosis factor receptor superfamily member 16 (NGFR as potential plasma CRC biomarkers. Methods. The study population comprises 152 CRC patients and 152 controls. Target protein levels in plasma and tissue samples were assessed by ELISA and immunohistochemistry, respectively. Results. Among the four candidate proteins examined by ELISA in a small sample set, only BST2 showed significantly elevated plasma levels in CRC patients versus controls. Immunohistochemical analysis revealed the overexpression of BST2 in CRC tissues, and higher BST2 expression levels correlated with poorer 5-year survival (46.47% versus 65.57%; p=0.044. Further verification confirmed the elevated plasma BST2 levels in CRC patients (2.35 ± 0.13 ng/mL versus controls (1.04 ± 0.03 ng/mL (p<0.01, with an area under the ROC curve (AUC being 0.858 comparable to that of CEA (0.867. Conclusion. BST2, a membrane protein selectively detected in CRC cell secretome, may be a novel plasma biomarker and prognosticator for CRC.

  1. In-depth analysis of secretome and N-glycosecretome of human hepatocellular carcinoma metastatic cell lines shed light on metastasis correlated proteins.

    Science.gov (United States)

    Li, Xianyu; Jiang, Jing; Zhao, Xinyuan; Zhao, Yan; Cao, Qichen; Zhao, Qing; Han, Huanhuan; Wang, Jifeng; Yu, Zixiang; Peng, Bo; Ying, Wantao; Qian, Xiaohong

    2016-04-19

    Cancer cell metastasis is a major cause of cancer fatality. But the underlying molecular mechanisms remain incompletely understood, which results in the lack of efficient diagnosis, therapy and prevention approaches. Here, we report a systematic study on the secretory proteins (secretome) and secretory N-glycoproteins (N-glycosecretome) of four human hepatocellular carcinoma (HCC) cell lines with different metastatic potential, to explore the molecular mechanism of metastasis and supply the clues for effective measurement of diagnosis and therapy. Totally, 6242 unique gene products (GPs) and 1637 unique N-glycosites from 635 GPs were confidently identified. About 4000 GPs on average were quantified in each of the cell lines, 1156 of which show differential expression (pproteins were secretory proteins and proteins correlated to cell movement were significantly activated with the increasing of metastatic potential of the cell lines. Twenty-three GPs increased both in the secretome and the N-glycosecretome were chosen as candidates and verified by western blot analysis, and 10 of them were chosen for immunohistochemistry (IHC) analysis. The cumulative survival rates of the patients with candidate (FAT1, DKK3) suggested that these proteins might be used as biomarkers for HCC diagnosis. In addition, a comparative analysis with the published core human plasma database (1754 GPs) revealed that there were 182 proteins not presented in the human plasma database but identified by our studies, some of which were selected and verified successfully by western blotting in human plasma.

  2. Mapping N-linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Lu; Aryal, Uma K.; Dai, Ziyu; Mason, Alisa C.; Monroe, Matthew E.; Tian, Zhixin; Zhou, Jianying; Su, Dian; Weitz, Karl K.; Liu, Tao; Camp, David G.; Smith, Richard D.; Baker, Scott E.; Qian, Weijun

    2012-01-01

    Protein glycosylation is known to play an essential role in both cellular functions and the secretory pathways; however, little information is available on the dynamics of glycosylated N-linked glycosites of fungi. Herein we present the first extensive mapping of glycosylated N-linked glycosites in industrial strain Aspergillus niger by applying an optimized solid phase enrichment of glycopeptide protocol using hydrazide modified magnetic beads. The enrichment protocol was initially optimized using mouse plasma and A. niger secretome samples, which was then applied to profile N-linked glycosites from both the secretome and whole cell lysates of A. niger. A total of 847 unique N-linked glycosites and 330 N-linked glycoproteins were confidently identified by LC-MS/MS. Based on gene ontology analysis, the identified N-linked glycoproteins in the whole cell lysate were primarily localized in the plasma membrane, endoplasmic reticulum, golgi apparatus, lysosome, and storage vacuoles. The identified N-linked glycoproteins are involved in a wide range of biological processes including gene regulation and signal transduction, protein folding and assembly, protein modification and carbohydrate metabolism. The extensive coverage of glycosylated N-linked glycosites along with identification of partial N-linked glycosylation in those enzymes involving in different biochemical pathways provide useful information for functional studies of N-linked glycosylation and their biotechnological applications in A. niger.

  3. Effect of Entomopathogenic Nematodes (Rhabditida: Steinernematidae and Heterorhabditidae) on Meloidogyne mayaguensis Rammah and Hirschmann (Tylenchida: Meloidoginidae) Infection in Tomato Plants

    Science.gov (United States)

    Molina, J. P.; Dolinski, C.; Souza, R. M.; Lewis, E. E.

    2007-01-01

    Some studies suggest that entomopathogenic nematodes (EPN) affect plant-parasitic nematode populations. Here, the effects of live and dead IJ of Heterorhabditis bacteriophora JPM4, H. baujardi LPP7, Steinernema feltiae SN and S. carpocapsae All were evaluated against eggs and J2 of the plant-parasitic nematode Meloidogyne mayaguensis. According to treatment, 100 IJ were applied with 350 eggs, 350 J2 or 175 eggs + 175 J2 to tomato plants. Bioassays were conducted in March to May and repeated in September to November 2005. Both experiments lasted 9 weeks, and the variable evaluated was number of galls per plant. When eggs were used for infections in the first trial, plants exhibited lower gall number compared to control when live and dead H. baujardi IJ and live S. feltiae IJ were added (9.7, 4.5, 7.3 and 85.7 galls, respectively). In the second trial, live S. feltiae and S. carpocapasae IJ influenced gall formation compared to control (14.33, 14.57 and 168.02 galls, respectively). When J2 were used for infections, plants with live H. baujardi IJ presented less galls when compared to control in both trials (38.3 and 355.7 galls in the first trial and 145.2 and 326.2 in the second one, respectively). Infection with a mixture of J2 and eggs resulted in fewer galls than when live S. feltiae IJ were present in both trials, compared to control (38.3 and 44.2 galls vs. 275.3 and 192.2 galls, respectively). We conclude that H. baujardi and S. feltiae apparently may be inhibiting egg hatching and J2 infection. PMID:19259509

  4. A study of interaction between Verticillium wilt Verticillium dahliae and root-knot nematode Meloidogyne javanica in olive cultivars.

    Science.gov (United States)

    Saeedizadeh, Ayatollah; Kheiri, Ahmad; Zad, Javad; Etebarian, Hasan Reza; Bandani, Ali Reza; Nasiri, Mohammad Bagher

    2009-01-01

    Second stage juvenile (J2) of root-knot nematode, Meloidogyne javanica, and microsclerotia of verticillium wilt, Verticillium dahliae, were used as the source of inoculum for nematode and fungus respectively. One-year-old seedlings of olive cultivars, Zard, Roghani, Koroneiki and Manzanilla, were transplanted to pots containing 2000g of sterilized sandy loam soil. Experiment was conducted in completely randomized design with 32 treatments and five replications. Treatments were as follows: control, nematode alone, fungus alone and fungus + nematode. Pots were inoculated with (0, 2000, 3000, 4000) J2 of nematode and/or (10 no/g soil) microsclerotia of fungus according to the treatments. Experiment was terminated after 10 months and fallowing parameters were determined i.e., fresh weight of root and stem, number of galls and egg masses per root system, and percentage of incidence of symptom on aerial parts, browning of vascular tissue, decrease of seedling height and stem/root tissue colonization by fungus. Results showed that presence of nematode caused reduction on colonization of the fungus in the root and stem and vice versa i.e. presence of fungus caused reduction on number of galls and egg masses produced by the nematode. Severe fungus wilt on aerial parts of Manzanilla cultivar was observed when both pathogens were inoculated and mild fungus wilt was observed in fungus alone treatments of Koroneiki cultivar. Galling and egg mass production in root system were reduced in cvs Manzanilla, Zard, Roghani and Koroneiki, respectively (p Manzanilla, respectively (p < or = 0/05).

  5. Transcription Factor Repertoire of Necrotrophic Fungal Phytopathogen Ascochyta rabiei: Predominance of MYB Transcription Factors As Potential Regulators of Secretome

    Directory of Open Access Journals (Sweden)

    Sandhya Verma

    2017-06-01

    Full Text Available Transcription factors (TFs are the key players in gene expression and their study is highly significant for shedding light on the molecular mechanisms and evolutionary history of organisms. During host–pathogen interaction, extensive reprogramming of gene expression facilitated by TFs is likely to occur in both host and pathogen. To date, the knowledge about TF repertoire in filamentous fungi is in infancy. The necrotrophic fungus Ascochyta rabiei, that causes destructive Ascochyta blight (AB disease of chickpea (Cicer arietinum, demands more comprehensive study for better understanding of Ascochyta-legume pathosystem. In the present study, we performed the genome-wide identification and analysis of TFs in A. rabiei. Taking advantage of A. rabiei genome sequence, we used a bioinformatic approach to predict the TF repertoire of A. rabiei. For identification and classification of A. rabiei TFs, we designed a comprehensive pipeline using a combination of BLAST and InterProScan software. A total of 381 A. rabiei TFs were predicted and divided into 32 fungal specific families of TFs. The gene structure, domain organization and phylogenetic analysis of abundant families of A. rabiei TFs were also carried out. Comparative study of A. rabiei TFs with that of other necrotrophic, biotrophic, hemibiotrophic, symbiotic, and saprotrophic fungi was performed. It suggested presence of both conserved as well as unique features among them. Moreover, cis-acting elements on promoter sequences of earlier predicted A. rabiei secretome were also identified. With the help of published A. rabiei transcriptome data, the differential expression of TF and secretory protein coding genes was analyzed. Furthermore, comprehensive expression analysis of few selected A. rabiei TFs using quantitative real-time polymerase chain reaction revealed variety of expression patterns during host colonization. These genes were expressed in at least one of the time points tested post

  6. Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.

    Science.gov (United States)

    Meinhardt, Lyndel W; Costa, Gustavo Gilson Lacerda; Thomazella, Daniela P T; Teixeira, Paulo José P L; Carazzolle, Marcelo Falsarella; Schuster, Stephan C; Carlson, John E; Guiltinan, Mark J; Mieczkowski, Piotr; Farmer, Andrew; Ramaraj, Thiruvarangan; Crozier, Jayne; Davis, Robert E; Shao, Jonathan; Melnick, Rachel L; Pereira, Gonçalo A G; Bailey, Bryan A

    2014-02-27

    The basidiomycete Moniliophthora roreri is the causal agent of Frosty pod rot (FPR) disease of cacao (Theobroma cacao), the source of chocolate, and FPR is one of the most destructive diseases of this important perennial crop in the Americas. This hemibiotroph infects only cacao pods and has an extended biotrophic phase lasting up to sixty days, culminating in plant necrosis and sporulation of the fungus without the formation of a basidiocarp. We sequenced and assembled 52.3 Mb into 3,298 contigs that represent the M. roreri genome. Of the 17,920 predicted open reading frames (OFRs), 13,760 were validated by RNA-Seq. Using read count data from RNA sequencing of cacao pods at 30 and 60 days post infection, differential gene expression was estimated for the biotrophic and necrotrophic phases of this plant-pathogen interaction. The sequencing data were used to develop a genome based secretome for the infected pods. Of the 1,535 genes encoding putative secreted proteins, 1,355 were expressed in the biotrophic and necrotrophic phases. Analysis of the data revealed secretome gene expression that correlated with infection and intercellular growth in the biotrophic phase and invasive growth and plant cellular death in the necrotrophic phase. Genome sequencing and RNA-Seq was used to determine and validate the Moniliophthora roreri genome and secretome. High sequence identity between Moniliophthora roreri genes and Moniliophthora perniciosa genes supports the taxonomic relationship with Moniliophthora perniciosa and the relatedness of this fungus to other basidiomycetes. Analysis of RNA-Seq data from infected plant tissues revealed differentially expressed genes in the biotrophic and necrotrophic phases. The secreted protein genes that were upregulated in the biotrophic phase are primarily associated with breakdown of the intercellular matrix and modification of the fungal mycelia, possibly to mask the fungus from plant defenses. Based on the transcriptome data, the

  7. Label-free proteomic analysis of environmental acidification-influenced Streptococcus pyogenes secretome reveals a novel acid-induced protein histidine triad protein A (HtpA) involved in necrotizing fasciitis.

    Science.gov (United States)

    Wen, Yao-Tseng; Wang, Jie-Siou; Tsai, Shu-Han; Chuan, Chiang-Ni; Wu, Jiunn-Jong; Liao, Pao-Chi

    2014-09-23

    Streptococcus pyogenes is responsible for various diseases. During infection, bacteria must adapt to adverse environments, such as the acidic environment. Acidic stimuli may stimulate S. pyogenes to invade into deeper tissue. However, how this acidic stimulus causes S. pyogenes to manipulate its secretome for facilitating invasion remains unclear. The dynamic label-free LC-MS/MS profiling identified 97 proteins, which are influenced by environmental acidification. Among these, 33 (34%) of the identified proteins were predicted to be extracellular proteins. Interestingly, classical secretory proteins comprise approximately 90% of protein abundance of the secretome in acidic condition at the stationary phase. One acid-induced secreted protein, HtpA, was selected to investigate its role in invasive infection. The mouse infected by the htpA deficient mutant showed lower virulence and smaller lesion area than the wild-type strain. The mutant strain was more efficiently cleared at infected skin than the wild-type strain. Besides, the relative phagocytosis resistance is lower in the mutant strain than in the wild-type strain. These data indicate that a novel acid-induced virulence factor, HtpA, which improves anti-phagocytosis ability for causing necrotizing fasciitis. Our investigation provides vital information for documenting the broad influences and mechanisms underlying the invasive behavior of S. pyogenes in an acidified environment. The acidified infected environment may facilitate S. pyogenes invasion from the mucosa to the deeper subepithelial tissue. The acid stimuli have been considered to affect the complex regulatory network of S. pyogenes for causing severe infections. Many of secreted virulence factors influenced by acidified environment may also play a crucial role in pathogenesis of invasive disease. To investigate temporal secretome changes under acidic environment, a comparative secretomics approach using label-free LC-MS/MS was undertaken to analyze

  8. Specificity fingerprinting of retaining beta-1,4-glycanases in the Cellulomonas fimi secretome using two fluorescent mechanism-based probes.

    Science.gov (United States)

    Hekmat, Omid; Florizone, Christine; Kim, Young-Wan; Eltis, Lindsay D; Warren, R Antony J; Withers, Stephen G

    2007-11-23

    Functional proteomics methods are crucial for activity- and mechanism-based investigation of enzymes in biological systems at a post-translational stage. Glycosidases have central roles in cellular metabolism and its regulation, and their dysfunction can have detrimental effects. These enzymes also play key roles in biomass conversion. A functional profiling methodology was developed for direct, fluorescence-based, in-gel analysis of retaining beta-glycosidases. Two spectrally nonoverlapping fluorescent, mechanism-based probes containing different recognition elements for retaining cellulases and xylanases were prepared. The specificity-based covalent labelling of retaining glycanases by the two probes was demonstrated in model enzyme mixtures. Using the two probes and mass spectrometry, the secretomes of the biomass-converting bacterium Cellulomonas fimi, under induction by different polyglycan growth substrates, were analysed to obtain a specificity profile of the C. fimi retaining beta-glycanases. This is a facile strategy for the analysis of glycosidases produced by biomass-degrading organisms.

  9. DENSIDAD CRÍTICA DE Meloidogyne exigua EN PLANTAS DE ALMÁCIGO DE CAFÉ VARIEDAD CATURRA

    Directory of Open Access Journals (Sweden)

    Mainor Rojas

    2013-01-01

    Full Text Available El objetivo del estudio fue evaluar el efecto de densidad creciente de Meloidogyne exigua sobre el desarrollo de plantas de almácigo. Se trasplantaron plántulas de café variedad caturra a bolsas de polietileno con 1335 cm3 de sustrato desinfectado, para establecer un ensayo con diseño de bloques completos al azar, con 8 repeticiones. Los tratamientos aplicados consistieron de poblaciones iniciales (Pi de 0; 0,125; 0,25; 0,5; 1; 2; 4; 8; 16; 32 y 64 huevos+J2/ cm3 de sustrato, aplicadas un mes después del trasplante. El modelo y=m+(1-m ZP-T aplicado 234 días después del trasplante para la altura, diámetro, número de nudos y peso fresco aéreo, indicó que el límite de tolerancia (T fue de 0,66; 0,06; 0,13 y 0,88 huevos+J2/cm3, respectivamente; la producción mínima relativa (m fue de 0,79; 0,79; 0,33 y 0,54 respectivamente, a Pi iguales o mayores a 64 huevos+J2/cm3. El índice de agallas alcanzó el máximo a partir de una Pi de 2; el pico máximo de nematodos en el suelo y las raíces se alcanzó con Pi entre 2 y 4; mientras la tasa máxima de reproducción fue de 114 con Pi de 0,125. Se concluyó que la densidad crítica fue cercana a cero huevos/cm3 de sustrato como población inicial, y que el almácigo se debe desarrollar libre de nematodos, ya que aún con Pi bajas se puede alcanzar la máxima población en corto tiempo.

  10. Bioactive Volatiles from an Endophytic Daldinia cf. concentrica Isolate Affect the Viability of the Plant Parasitic Nematode Meloidogyne javanica.

    Directory of Open Access Journals (Sweden)

    Orna Liarzi

    Full Text Available Plant-parasitic nematodes form one of the largest sources of biotic stress imposed on plants, and are very difficult to control; among them are the obligate parasites, the sedentary root-knot nematodes (RKNs-Meloidogyne spp.-which are extremely polyphagous and exploit a very wide range of hosts. Endophytic fungi are organisms that spend most of their life cycle within plant tissue without causing visible damage to the host plant. Many endophytes secrete specialized metabolites and/or emit volatile organic compounds (VOCs that exhibit biological activity. Recently, we demonstrated that the endophytic fungus Daldinia cf. concentrica secrets biologically active VOCs. Here we examined the ability of the fungus and its VOCs to control the RKN M. javanica both in vitro and greenhouse experiments. The D. cf. concentrica VOCs showed bionematicidal activity against the second-stage juveniles (J2s of M. javanica. We found that exposure of J2s to fungal volatiles caused 67% reduction in viability, and that application of a synthetic volatile mixture (SVM, comprising 3-methyl-1-butanol, (±-2-methyl-1-butanol, 4-heptanone, and isoamyl acetate, in volumetric ratio of 1:1:2:1 further reduced J2s viability by 99%. We demonstrated that, although each of the four VOCs significantly reduced the viability of J2s relative to the control, only 4-heptanone elicited the same effect as the whole mixture, with nematicidal activity of 90% reduction in viability of the J2s. Study of the effect of the SVM on egg hatching demonstrated that it decreased eggs hatching by 87%. Finally, application of the SVM to soil inoculated with M. javanica eggs or J2s prior to planting susceptible tomato plants resulted in a significantly reduced galling index and fewer eggs produced on each root system, with no effect on root weight. Thus, D. cf. concentrica and/or SVM based on fungal VOCs may be considered as a novel alternative approach to controlling the RKN M. javanica.

  11. COMBINING EFFECTS OF CULTURAL PRACTICES AND RESISTANT CULTIVARS ON REDUCING THE INCIDENCE OF Meloidogyne spp. AND Thrips palmy Karny ON POTATO

    Directory of Open Access Journals (Sweden)

    Wiwin Setiawati

    2013-05-01

    Full Text Available Root-knot nematode (Meloidogyne spp. and melon thrips (Thrips palmy Karny are two serious pests on potato. These pests are conventionally controlled with synthetic pesticides. Cultural practices based on integrated pest management (IPM are alternative methods to control these pests. The study aimed to determine the effectiveness of combined applications of cultural practices and potato cultivars in reducing the incidences of nematode and thrips. Treatments evaluated were methods of nematode and thrips control by implementing IPM and conventional practices. A split-plot randomized complete block design with four replications was  sed. The main plots were IPM or cultural practices (subsoiling, soil solarization and use of trap crop of marigold Tagetes erecta and conventional practices using synthetic pesticides. The subplots were five potato cultivars, i.e. No. 095 (Herta x FLS–17, 720050/Kikondo, 676068/ I.1085, Granola, and Atlantic. The results showed that applications of cultural practices in combination with potato cultivars reduced Meloidogyne spp. population and potato tuber damage by 53.70% and 61.36%, respectively, as well as a significantly decreased thrips population. In the cultural control plots, thrips populations were below the action threshold (10.0 nymphs per leaf, therefore no single application of pesticide was used. This was in contrast to the conventional control treatments where insecticide was spayed 10 times until harvest. The subsoiling and solarization cut off the life cycle of the thrips and any survive thrips were trapped by marigold plant. Population of T. palmi on the five potato cultivars differed significantly; the lowest population was found on the cultivars No. 095 (Herta x FLS-17 and 676068/I.1085. The cultural control practices combined with potato cultivar No. 095 (Herta x FLS–17 were the best treatment for controlling Meloidogyne spp. and T. palmi on potato and also produced the highest yield (31.01 t

  12. Molecular Profiling of the Phytophthora plurivora Secretome: A Step towards Understanding the Cross-Talk between Plant Pathogenic Oomycetes and Their Hosts

    Science.gov (United States)

    Fleischmann, Frank; Dalio, Ronaldo J. D.; Di Maro, Antimo; Scognamiglio, Monica; Fiorentino, Antonio; Parente, Augusto; Osswald, Wolfgang; Chambery, Angela

    2014-01-01

    The understanding of molecular mechanisms underlying host–pathogen interactions in plant diseases is of crucial importance to gain insights on different virulence strategies of pathogens and unravel their role in plant immunity. Among plant pathogens, Phytophthora species are eliciting a growing interest for their considerable economical and environmental impact. Plant infection by Phytophthora phytopathogens is a complex process coordinated by a plethora of extracellular signals secreted by both host plants and pathogens. The characterization of the repertoire of effectors secreted by oomycetes has become an active area of research for deciphering molecular mechanisms responsible for host plants colonization and infection. Putative secreted proteins by Phytophthora species have been catalogued by applying high-throughput genome-based strategies and bioinformatic approaches. However, a comprehensive analysis of the effective secretome profile of Phytophthora is still lacking. Here, we report the first large-scale profiling of P. plurivora secretome using a shotgun LC-MS/MS strategy. To gain insight on the molecular signals underlying the cross-talk between plant pathogenic oomycetes and their host plants, we also investigate the quantitative changes of secreted protein following interaction of P. plurivora with the root exudate of Fagus sylvatica which is highly susceptible to the root pathogen. We show that besides known effectors, the expression and/or secretion levels of cell-wall-degrading enzymes were altered following the interaction with the host plant root exudate. In addition, a characterization of the F. sylvatica root exudate was performed by NMR and amino acid analysis, allowing the identification of the main released low-molecular weight components, including organic acids and free amino acids. This study provides important insights for deciphering the extracellular network involved in the highly susceptible P. plurivora-F. sylvatica interaction

  13. Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system.

    Science.gov (United States)

    Zhu, Ning; Liu, Jiawen; Yang, Jinshui; Lin, Yujian; Yang, Yi; Ji, Lei; Li, Meng; Yuan, Hongli

    2016-01-01

    The genome of Schizophyllum commune encodes a diverse repertoire of degradative enzymes for plant cell wall breakdown. Recent comparative genomics study suggests that this wood decayer likely has a mode of biodegradation distinct from the well-established white-rot/brown-rot models. However, much about the extracellular enzyme system secreted by S. commune during lignocellulose deconstruction remains unknown and the underlying mechanism is poorly understood. In this study, extracellular proteins of S. commune colonizing Jerusalem artichoke stalk were analyzed and compared with those of two white-rot fungi Phanerochaete chrysosporium and Ceriporiopsis subvermispora and a brown-rot fungus Gloeophyllum trabeum. Under solid-state fermentation (SSF) conditions, S. commune displayed considerably higher levels of hydrolytic enzyme activities in comparison with those of P. chrysosporium, C. subvermispora and G. trabeum. During biodegradation process, this fungus modified the lignin polymer in a way which was consistent with a hydroxyl radical attack, similar to that of G. trabeum. The crude enzyme cocktail derived from S. commune demonstrated superior performance over a commercial enzyme preparation from Trichoderma longibrachiatum in the hydrolysis of pretreated lignocellulosic biomass at low enzyme loadings. Secretomic analysis revealed that compared with three other fungi, this species produced a higher diversity of carbohydrate-degrading enzymes, especially hemicellulases and pectinases acting on polysaccharide backbones and side chains, and a larger set of enzymes potentially supporting the generation of hydroxyl radicals. In addition, multiple non-hydrolytic proteins implicated in enhancing polysaccharide accessibility were identified in the S. commune secretome, including lytic polysaccharide monooxygenases (LPMOs) and expansin-like proteins. Plant lignocellulose degradation by S. commune involves a hydroxyl radical-mediated mechanism for lignocellulose modification

  14. Incidence de quelques facteurs agronomiques sur les populations de Meloidogyne spp. et leurs principaux organismes parasites en culture maraîchère sahélienne

    OpenAIRE

    Sawadogo, A.; Diop, M.T.; Thio, B.; Konaté, Y.A.; Mateille, Thierry

    2000-01-01

    Des prospections nématologiques ont été réalisées dans les régions de production maraîchère de deux pays sahéliens, le Burkina Faso et le Sénégal. Des analyses de correspondances entre quelques facteurs agronomiques et les populations de #Meloidogyne$ spp. ont montré que les niveaux des populations telluriques et racinaires n'étaient pas exclusivement liées à la sensibilité des cultures maraîchères en place, mais dépendaient aussi des précédents culturaux ou des agrosystèmes (terres inondées ...

  15. A TaqMan real-time PCR assay for detection of Meloidogyne hapla in root galls and in soil

    DEFF Research Database (Denmark)

    Sapkota, Rumakanta; Skantar, Andrea M.; Nicolaisen, Mogens

    2016-01-01

    . haplaand showed no significant amplification of DNA from non-target nematodes. The assay was able to detect M. haplain a background of plant and soil DNA. A dilution series of M. haplaeggs in soil showed a high correlation ( R 2 = 0 . 95 , P ...Early detection and quantification of Meloidogyne haplain soil is essential for effective disease management. The purpose of this study was to develop a real-time PCR assay for detection of M. haplain soil. Primers and a TaqMan probe were designed for M. hapladetection. The assay detected M......-knot development in carrots by testing soils before planting. The assay could be useful for management decisions in carrot cultivation....

  16. Efficacy of Carbofuran in Controlling Root-Knot Nematode (Meloidogyne javanica Whitehead, 1949 on Cultivars of Bambara Groundnut (Vigna subterranea (L. Verdc. in Yola, Nigeria

    Directory of Open Access Journals (Sweden)

    M. Y. Jada

    2011-01-01

    Full Text Available Bambara groundnut (Vigna subterrenea L. Verdc. is an important crop produced in Adamawa State of Nigeria. However, the production of the crop is seriously threatened by root-knot nematodes (RKNs; Meloidogyne spp.. Since cultural methods have not been very effective in controlling RKN, carbofuran was evaluated to determine its efficacy in controlling M. javanica in Yola during 2002 and 2003. Three bambara groundnut cultivars (Kwachanjiwa, Kwaheuma, and Kwatolotolo were evaluated using three application timings (at planting, 3 and 6 weeks after planting, and none. Results indicated that applying carbofuran at planting provided the greatest reduction in M. javanica population levels, which lead to increased yields in bambara groundnuts compared to the other two application timings. Furthermore, both Kwachanjiwa and Kwatolotolo provided similar high yields compared to Kwaheuma, which was most likely related to the M. javanica tolerance in these cultivars.

  17. Absorption of 32P-phosphate and photosynthetic 14CO2 fixation in mulberry attacked by the root-knot nematoda, Meloidogyne mali

    International Nuclear Information System (INIS)

    Toida, Yukio; Yamashita, Tadaaki

    1985-01-01

    Radioactive phosphate was applied to mulberry plants infected with the root-knot nematode, Meloidogyne mali, to analyze root uptake and translocation into leaves. A much larger accumulation of 32 P was observed in the roots and leaves on the upper part of the stem in the infected plant than in the uninfected one. The photosynthetic activity measured by the short-term 14 CO 2 fixation by a leaf segment in the leaf of the infected plant was half that of the uninfected plant. However, no significant differences in the percentage distribution of 14 C in various photosynthetic products were recognized, and main 14 C compounds consist of alanine of serine in the leaves of both plant. It was suggested that the low growth performance and dwarfing in the mulberry plant attacked by the nematode were caused by the remarkable increase of phosphate uptake under the limited supply of photosynthetic products. (author)

  18. Resistência do cafeeiro a nematóides: I - Testes em progênies e híbridos, para Meloidogyne exigua Coffee breeding for resistance to Meloidogyne exigua: I - Screening test using arabica progenies and interespecific hybrids

    Directory of Open Access Journals (Sweden)

    L. C. Fazuoli

    1977-01-01

    Full Text Available Procurou-se identificar fontes de resistência ao nematóide Meloidogyne exígua em cafeeiros derivados de híbridos interespecíficos e em progênies de café arábica oriundas da Etiópia, em experimentos estabelecidos em duas localidades. A infestação foi feita por dois processos usados com freqüência nesse tipo de trabalho. As avaliações do grau de ataque foram feitas quatro e 12 meses após a infestação, em Campinas e Ribeirão Preto, respectivamente, adotando-se escala variando de zero, para ausência de galhas, a cinco pontos para grande intensidade de ataque. Verificou-se que a leitura feita aos quatro meses é tão eficiente quanto aos 12 meses, indicando a possibilidade de abreviar consideravelmente a duração dessas avaliações. Notou-se, no experimento de Ribeirão Preto, uma redução de aproximadamente 8% no crescimento das mudas infestadas e verificou-se, também, uma redução de 11,5% e 12% nos pesos verde e seco das plantas, devido ao ataque do nematóide. De 1.692 plantas examinadas nos dois experimentos, selecionaram-se 106 (6,3%, caracterizadas pela ausência de galhas. As populações derivadas dos híbridos entre Coffea arabica e C. canephora revelaram-se mais promissoras, contribuindo com maior número de plantas resistentes. As plantas do experimento instalado em Campinas foram inoculadas também com a raça II de Hemileia vastatrix para o estudo da resistência conjunta aos dois patógenos. Essas seleções, em número de 38, representam valioso material para o programa de melhoramento do cafeeiro.Two coffee screening tests were undertaken in order to find out sources of resistance to the nematode M. exigua. Arabica progenies from Ethiopia origin and advanced popu-lations derived from interspecific crosses (Coffea arabica x C. canephora and C. arabica x C. dewevrei were evaluated. A five point scale (0 point to the roots without galls and 5 points to severely attacked roots was used for determination of the

  19. Resistance to Root-knot Nematodes in Cucumber and Horned Cucumber

    Science.gov (United States)

    Wehner, Todd C.; Walters, S. Alan; Barker, Kenneth R.

    1991-01-01

    Two experiments were conducted in the greenhouse. In one experiment, cucumber (Cucumis sativus) and horned cucumber (C. metuliferus) cultigens were evaluated for resistance to four root-knot nematode species (Meloidogyne arenaria, M. hapla, M. incognita, and M. javanica), and, in a second experiment, a standard (12-week) test was compared with a rapid (6-week) test. In the first experiment, horned cucumber cultigens varied in response to the Meloidogyne species. 'Sumter' cucumber was more susceptible than the horned cucumber to Meloidogyne incognita, M. javanica, and M. arenaria. All cultigens were more resistant to M. hapla than to the other root-knot nematode species. In the second experiment, best results were obtained when the test was run for 12 weeks rather than 6 weeks after planting (or 10 and 4 weeks after inoculation, respectively). All cultigens were more resistant to M. arenaria than to either M. incognita or M. javanica. PMID:19283171

  20. Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics

    Science.gov (United States)

    2013-01-01

    Background The apicomplexan parasite Neospora caninum causes neosporosis, a disease that leads to abortion or stillbirth in cattle, generating an economic impact on the dairy and beef cattle trade. As an obligatory intracellular parasite, N. caninum needs to invade the host cell in an active manner to survive. The increase in parasite cytosolic Ca2+ upon contact with the host cell mediates critical events, including the exocytosis of phylum-specific secretory organelles and the activation of the parasite invasion motor. Because invasion is considered a requirement for pathogen survival and replication within the host, the identification of secreted proteins (secretome) involved in invasion may be useful to reveal interesting targets for therapeutic intervention. Methods To chart the currently missing N. caninum secretome, we employed mass spectrometry-based proteomics to identify proteins present in the N. caninum tachyzoite using two different approaches. The first approach was identifying the proteins present in the tachyzoite-secreted fraction (ESA). The second approach was determining the relative quantification through peptide stable isotope labelling of the tachyzoites submitted to an ethanol secretion stimulus (discharged tachyzoite), expecting to identify the secreted proteins among the down-regulated group. Results As a result, 615 proteins were identified at ESA and 2,011 proteins quantified at the discharged tachyzoite. We have analysed the connection between the secreted and the down-regulated proteins and searched for putative regulators of the secretion process among the up-regulated proteins. An interaction network was built by computational prediction involving the up- and down-regulated proteins. The mass spectrometry proteomics data have been deposited to the ProteomeXchange with identifier PXD000424. Conclusions The comparison between the protein abundances in ESA and their measure in the discharged tachyzoite allowed for a more precise

  1. Potential of Tissue Culture for Breeding Root-Knot Nematode Resistance into Vegetables

    OpenAIRE

    Fassuliotis, G.; Bhatt, D. P.

    1982-01-01

    Plant protoplast technology is being investigated as a means of transferring root-knot nematode resistance factors from Solanum sisymbriifolium into the susceptible S. melongena. Solanum sisymbriifolium plants regenerated from callus lost resistance to Meloidogyne javanica but retained resistance to M. incognita. Tomato plants cloned from leaf discs of the root-knot nematode resistant 'Patriot' were completely susceptible to M. incognita, while sections of stems and leaves rooted in sand in t...

  2. Laboratorio de Nematología, Escuela de Fitotecnia, Facultad de Agronomía, Universidad de Costa Rica. San José, Costa Rica.

    OpenAIRE

    López, Róger

    2016-01-01

    No se detectó reproducción de Meloidogyne incognita en las malezas Lantana camara, Melampodium divaricatum, Bidens pilosa, Lepidium virginicum y Tagetes filifolia, en condiciones de invernadero. La reproducción de este nematodo fue pobre en Asclepias curassavica, Acmella oppositifolia, T. microglosa y T. jalisciensis. La formación de nódulo s radicales, causados por M. incognita en la siembra subsiguiente de tomate, fue severo en maceteros con suelos previamente sembrados con T. jalisciensis,...

  3. Species of root-knot nematodes and fungal egg parasites recovered from vegetables in Almería and Barcelona, Spain

    OpenAIRE

    Verdejo Lucas, Soledad; Ornat Longarón, Cèsar; Sorribas Royo, Francisco Javier; Stchigel, Alberto Miguel

    2002-01-01

    Intensive vegetable production areas were surveyed in the provinces of Almería (35 sites) and Barcelona (22 sites), Spain, to determine the incidence and identity of Meloidogyne spp. and of fungal parasites of nematode eggs. Two species of Meloidogyne were found in Almería—M. javanica (63% of the samples) and M. incognita (31%). Three species were found in Barcelona, including M. incognita (50%), M. javanica (36%), and M. arenaria (14%). Solanaceous crops supported larger (P < 0.05) nematode ...

  4. PROS-1/Prospero Is a Major Regulator of the Glia-Specific Secretome Controlling Sensory-Neuron Shape and Function in C. elegans.

    Science.gov (United States)

    Wallace, Sean W; Singhvi, Aakanksha; Liang, Yupu; Lu, Yun; Shaham, Shai

    2016-04-19

    Sensory neurons are an animal's gateway to the world, and their receptive endings, the sites of sensory signal transduction, are often associated with glia. Although glia are known to promote sensory-neuron functions, the molecular bases of these interactions are poorly explored. Here, we describe a post-developmental glial role for the PROS-1/Prospero/PROX1 homeodomain protein in sensory-neuron function in C. elegans. Using glia expression profiling, we demonstrate that, unlike previously characterized cell fate roles, PROS-1 functions post-embryonically to control sense-organ glia-specific secretome expression. PROS-1 functions cell autonomously to regulate glial secretion and membrane structure, and non-cell autonomously to control the shape and function of the receptive endings of sensory neurons. Known glial genes controlling sensory-neuron function are PROS-1 targets, and we identify additional PROS-1-dependent genes required for neuron attributes. Drosophila Prospero and vertebrate PROX1 are expressed in post-mitotic sense-organ glia and astrocytes, suggesting conserved roles for this class of transcription factors. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

  5. The Apoplastic Secretome of Trichoderma virens During Interaction With Maize Roots Shows an Inhibition of Plant Defence and Scavenging Oxidative Stress Secreted Proteins

    Directory of Open Access Journals (Sweden)

    Guillermo Nogueira-Lopez

    2018-04-01

    Full Text Available In Nature, almost every plant is colonized by fungi. Trichoderma virens is a biocontrol fungus which has the capacity to behave as an opportunistic plant endophyte. Even though many plants are colonized by this symbiont, the exact mechanisms by which Trichoderma masks its entrance into its plant host remain unknown, but likely involve the secretion of different families of proteins into the apoplast that may play crucial roles in the suppression of plant immune responses. In this study, we investigated T. virens colonization of maize roots under hydroponic conditions, evidencing inter- and intracellular colonization by the fungus and modifications in root morphology and coloration. Moreover, we show that upon host penetration, T. virens secretes into the apoplast an arsenal of proteins to facilitate inter- and intracellular colonization of maize root tissues. Using a gel-free shotgun proteomics approach, 95 and 43 secretory proteins were identified from maize and T. virens, respectively. A reduction in the maize secretome (36% was induced by T. virens, including two major groups, glycosyl hydrolases and peroxidases. Furthermore, T. virens secreted proteins were mainly involved in cell wall hydrolysis, scavenging of reactive oxygen species and secondary metabolism, as well as putative effector-like proteins. Levels of peroxidase activity were reduced in the inoculated roots, suggesting a strategy used by T. virens to manipulate host immune responses. The results provide an insight into the crosstalk in the apoplast which is essential to maintain the T. virens-plant interaction.

  6. A secretome view of colonisation factors in Shiga toxin-encoding Escherichia coli (STEC): from enterohaemorrhagic E. coli (EHEC) to related enteropathotypes.

    Science.gov (United States)

    Monteiro, Ricardo; Ageorges, Valentin; Rojas-Lopez, Maricarmen; Schmidt, Herbert; Weiss, Agnes; Bertin, Yolande; Forano, Evelyne; Jubelin, Grégory; Henderson, Ian R; Livrelli, Valérie; Gobert, Alain P; Rosini, Roberto; Soriani, Marco; Desvaux, Mickaël

    2016-08-01

    Shiga toxin-encoding Escherichia coli (STEC) regroup strains that carry genes encoding Shiga toxin (Stx). Among intestinal pathogenic E. coli, enterohaemorrhagic E. coli (EHEC) constitute the major subgroup of virulent STEC. EHEC cause serious human disease such as haemorrhagic colitis and haemolytic-uremic syndrome. While EHEC have evolved from enteropathogenic E. coli, hybrids with enteroaggregative E. coli have recently emerged. Of note, some enteroinvasive E. coli also belong to the STEC group. While the LEE (locus of enterocyte effacement) is a key and prominent molecular determinant in the pathogenicity, neither all EHEC nor STEC contain the LEE, suggesting that they possess additional virulence and colonisation factors. Currently, nine protein secretion systems have been described in diderm-lipopolysaccharide bacteria (archetypal Gram-negative) and can be involved in the secretion of extracellular effectors, cell-surface proteins or assembly of cell-surface organelles, such as flagella or pili. In this review, we focus on the secretome of STEC and related enteropathotypes, which are relevant to the colonisation of biotic and abiotic surfaces. Considering the wealth of potential protein trafficking mechanisms, the different combinations of colonisation factors and modulation of their expression is further emphasised with regard to the ecophysiology of STEC. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  7. Resistance to Root-knot Nematodes in Cucumber and Horned Cucumber

    OpenAIRE

    Wehner, Todd C.; Walters, S. Alan; Barker, Kenneth R.

    1991-01-01

    Two experiments were conducted in the greenhouse. In one experiment, cucumber (Cucumis sativus) and horned cucumber (C. metuliferus) cultigens were evaluated for resistance to four root-knot nematode species (Meloidogyne arenaria, M. hapla, M. incognita, and M. javanica), and, in a second experiment, a standard (12-week) test was compared with a rapid (6-week) test. In the first experiment, horned cucumber cultigens varied in response to the Meloidogyne species. 'Sumter' cucumber was more sus...

  8. In vitro uptake of 140 kDa Bacillus thuringiensis nematicidal crystal proteins by the second stage juvenile of Meloidogyne hapla.

    Directory of Open Access Journals (Sweden)

    Fengjuan Zhang

    Full Text Available Plant-parasitic nematodes (PPNs are piercing/sucking pests, which cause severe damage to crops worldwide, and are difficult to control. The cyst and root-knot nematodes (RKN are sedentary endoparasites that develop specialized multinucleate feeding structures from the plant cells called syncytia or giant cells respectively. Within these structures the nematodes produce feeding tubes, which act as molecular sieves with exclusion limits. For example, Heterodera schachtii is reportedly unable to ingest proteins larger than 28 kDa. However, it is unknown yet what is the molecular exclusion limit of the Meloidogyne hapla. Several types of Bacillus thuringiensis crystal proteins showed toxicity to M. hapla. To monitor the entry pathway of crystal proteins into M. hapla, second-stage juveniles (J2 were treated with NHS-rhodamine labeled nematicidal crystal proteins (Cry55Aa, Cry6Aa, and Cry5Ba. Confocal microscopic observation showed that these crystal proteins were initially detected in the stylet and esophageal lumen, and subsequently in the gut. Western blot analysis revealed that these crystal proteins were modified to different molecular sizes after being ingested. The uptake efficiency of the crystal proteins by the M. hapla J2 decreased with increasing of protein molecular mass, based on enzyme-linked immunosorbent assay analysis. Our discovery revealed 140 kDa nematicidal crystal proteins entered M. hapla J2 via the stylet, and it has important implications in designing a transgenic resistance approach to control RKN.

  9. Biodesinfección del suelo y uso de Pochonia chlamydosporia en el manejo de Meloidogyne arenaria en el cultivo de guayabo en el oriente de Michoacán.

    OpenAIRE

    Torres López, Japhet

    2014-01-01

    El objetivo de esta investigación fue estudiar la respuesta de los árboles de guayabo al tratamiento con diferentes abonos orgánicos y la incorporación del hongo nematófago Pochonia chlamydosporia y el efecto en la reducción de juveniles (J2) de Meloidogyne arenaria. Se tomaron muestras de suelo infestados con el nematodo en la región guayabera oriente del estado de Michoacán, México. Se obtuvieron dos aislamientos de Pochonia chlamydosporia var. chlamydosporia provenientes de raíz y suelo. ...

  10. Godel's Explorations in Terra Incognita

    Indian Academy of Sciences (India)

    that the formula "A::> G" is formally provable. Deduce that A is not provable. Notice the similarity of steps 1 and 2 above with the approach in the discussion of Richard's paradox. The constructions needed in this scheme (of G and A) are carried out using Dem and sub, which were defined above. Gis given by the formula.

  11. A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism.

    Science.gov (United States)

    Chen, Jiansong; Hu, Lili; Sun, Longhua; Lin, Borong; Huang, Kun; Zhuo, Kan; Liao, Jinling

    2018-02-27

    Plant-parasitic nematodes can secrete effector proteins into the host tissue to facilitate their parasitism. In this study, we report a novel effector protein, MgMO237, from Meloidogyne graminicola, which is exclusively expressed within the dorsal oesophageal gland cell and markedly up-regulated in parasitic third-/fourth-stage juveniles of M. graminicola. Transient expression of MgMO237 in protoplasts from rice roots showed that MgMO237 was localized in the cytoplasm and nucleus of the host cells. Rice plants overexpressing MgMO237 showed an increased susceptibility to M. graminicola. In contrast, rice plants expressing RNA interference vectors targeting MgMO237 showed an increased resistance to M. graminicola. In addition, yeast two-hybrid and co-immunoprecipitation assays showed that MgMO237 interacted specifically with three rice endogenous proteins, i.e. 1,3-β-glucan synthase component (OsGSC), cysteine-rich repeat secretory protein 55 (OsCRRSP55) and pathogenesis-related BetvI family protein (OsBetvI), which are all related to host defences. Moreover, MgMO237 can suppress host defence responses, including the expression of host defence-related genes, cell wall callose deposition and the burst of reactive oxygen species. These results demonstrate that the effector MgMO237 probably promotes the parasitism of M. graminicola by interacting with multiple host defence-related proteins and suppressing plant basal immunity in the later parasitic stages of nematodes. © 2018 BSPP AND JOHN WILEY & SONS LTD.

  12. Evaluación in vitro de hongos nematófagos en zonas arroceras de Costa Rica contra el nematodo agallador Meloidogyne javanica

    Directory of Open Access Journals (Sweden)

    Walter Peraza Padilla

    2014-12-01

    Full Text Available Se evaluó el parasitismo in vitro de 14 aislamientos de hongos nematófagos (6 Trichoderma sp., 4 Paecilomyces sp., 2 Fusarium oxysporum, y 2 Monacrosporium sp. contra juveniles y huevos del nematodo agallador Meloidogyne javanica. Los hongos, de 3 regiones productoras de arroz en Costa Rica, (Pacífico Central, Huetar Atlántica y Chorotega, se aislaron mediante el método de espolvoreado en placas, durante abril del 2008 a agosto de 2009. Se utilizó un diseño completamente al azar con 10 repeticiones por hongo, en agar-agua (AA. Se inoculó una suspensión de 1 a 1,5x10 6 conidios (ufc.ml -1 por plato Petri, y al cuarto día se depositó en 0,5 ml una suspensión de 150 juveniles y 100 huevos de M. javanica previamente desinfectados, a temperatura ambiente (23-26°C y con luz natural. Transcurridas 96 h se contó en cada plato el número de nematodos vivos, muertos ó parasi- tados y de huevos parasitados o no parasitados. Se realizó un análisis de regresión logística (RL para las variables evaluadas, el cual mostró diferencias significativas (p<0,0001 en el desempeño de los hongos evaluados, presentando rangos de entre 10% a 56% en nematodos muertos, de 13% a 79% en nematodos parasitados y de 1% a 96% en huevos parasitados. En general, los hongos del género Trichoderma (Tri1, Tri2, Tri3 y Tri4 fueron los más eficientes en el parasitismo sobre juveniles y huevos de M. javanica.

  13. EVALUACIÓN IN VITRO DE HONGOS NEMATÓFAGOS EN ZONAS ARROCERAS DE COSTA RICA CONTRA EL NEMATODO AGALLADOR Meloidogyne javanica

    Directory of Open Access Journals (Sweden)

    Walter Peraza Padilla

    2014-01-01

    Full Text Available Se evaluó el parasitismo in vitro de 14 aislamientos de hongos nematófagos (6 Trichoderma sp., 4 Paecilomyces sp., 2 Fusarium oxysporum, y 2 Monacrosporium sp. contra juveniles y huevos del nematodo agallador Meloidogyne javanica. Los hongos, de 3 regiones productoras de arroz en Costa Rica, (Pacífico Central, Huetar Atlántica y Chorotega, se aislaron mediante el método de espolvoreado en placas, durante abril del 2008 a agosto de 2009. Se utilizó un diseño completamente al azar con 10 repeticiones por hongo, en agar-agua (AA. Se inoculó una suspensión de 1 a 1,5x106 conidios (ufc.ml-1 por plato Petri, y al cuarto día se depositó en 0,5 ml una suspensión de 150 juveniles y 100 huevos de M. javanica previamente desinfectados, a temperatura ambiente (23-26°C y con luz natural. Transcurridas 96 h se contó en cada plato el número de nematodos vivos, muertos ó parasitados y de huevos parasitados o no parasitados. Se realizó un análisis de regresión logística (RL para las variables evaluadas, el cual mostró diferencias significativas (p<0,0001 en el desempeño de los hongos evaluados, presentando rangos de entre 10% a 56% en nematodos muertos, de 13% a 79% en nematodos parasitados y de 1% a 96% en huevos parasitados. En general, los hongos del género Trichoderma (Tri1, Tri2, Tri3 y Tri4 fueron los más eficientes en el parasitismo sobre juveniles y huevos de M. javanica.

  14. Linhagens de alface-crespa para o verão resistentes ao Meloidogyne javanica e ao vírus mosaico-da-alface Lineages of crisp-leaf lettuce for summer cropping resistant to Meloidogyne javanica and to Lettuce mosaic virus

    Directory of Open Access Journals (Sweden)

    Renata Rodrigues Silva

    2008-10-01

    Full Text Available O objetivo deste trabalho foi selecionar famílias F4 de alface, oriundas do cruzamento entre as cultivares Verônica e Salinas 88, para o cultivo no verão, com relação ao tipo de folha, e à resistência ao Lettuce mosaic virus (LMV e ao nematóide-das-galhas Meloidogyne javanica. Primeiramente, avaliaram-se a coloração da folha, tipos de borda e limbo foliares, além da tolerância ao calor no campo, em blocos ao acaso compostos pelas 15 famílias F4 previamente selecionadas, pelas cultivares parentais e pela cultivar testemunha Regina 71 (folhas lisas e tolerante ao calor, com cinco repetições e oito plantas por parcela. Na segunda etapa, as famílias foram avaliadas quanto à resistência ao LMV e ao nematóide-das-galhas, em bandejas de 128 células acondicionadas em estufa. As médias das notas atribuídas a cada família foram comparadas às médias de cada cultivar parental pelo teste de Dunnet (5%. A família AFX007B-140-21, homozigota resistente aos nematóides e ao LMV e, também, tolerante ao calor, foi a mais promissora. O cruzamento entre uma cultivar de folhas crespas e soltas com uma de folhas crespas e repolhuda, pode originar linhagens promissoras tanto de folhas crespas quanto de folhas lisas.The aim of this work was to select F4 lettuce families, derived from the cross 'Veronica' x 'Salinas 88 ', for summer cropping, type of leaves, and for resistance to Meloidogyne javanica and to Lettuce mosaic virus (LMV. First, evaluations were made for leaf colour, leaf limb, border type, and heat tolerance in the field, in a complete blocks desing, in 15 F4 families previously selected, parent cultivars and, as control, the cultivar Regina 71 (butterleaf and tolerant to heat. Five replicates and eight plants per plot were used. As second step, the families were evaluated in greenhouse, in 128-cell expanded polystyrene trays, for resistance to LMV and root-knot nematodes. Score means of each family were compared to the means of

  15. Transgressive segregation of root-knot nematode resistance in cotton determined by QTL analysis

    Science.gov (United States)

    Transgressive resistance to root-knot nematode, Meloidogyne incognita, was found in intraspecific (Gossypium hirsutum; resistant Acala NemX x susceptible Acala SJ-2) and interspecific (G. barbadense susceptible Pima-S7 x Acala NemX) cotton recombinant inbred line (RIL) populations. Similar contribut...

  16. Browse Title Index

    African Journals Online (AJOL)

    Items 51 - 100 of 359 ... Vol 8, No 1 (2008), Comparison of the effects of carbofuran and poultry manure in the management of Meloidogyne incognita race 2 on the growth and yield of ... Vol 16, No 1 (2016), Determinants of climate change adaptive strategies among small-scale yam farmers in Federal Capital Territory, Nigeria ...

  17. Biologische grondontsmetting bij de teelt van trekheesters: Implementatie van een alternatieve ontsmettingsmerhode in de praktijk

    NARCIS (Netherlands)

    Ludeking, D.J.W.; Hamelink, R.; Bloemhard, C.M.J.; Slooten, van M.A.

    2011-01-01

    This report is about biological soil disinfestation with an organic product named Herbie 7022. The effect has been investigated against Verticillium dahliae, Meloidogyne incognita and larvae of Serica brunnea. All larvae of Serica brunnea are killed after application of a period of anaerobic

  18. Effects of Methanolic Extracts from the Leaves of Brimstone, Cassia ...

    African Journals Online (AJOL)

    Effects of Methanolic Extracts from the Leaves of Brimstone, Cassia, Lemon Grass and Chanca Piedra on Meloidogyne Incognita in the Laboratory. ... and the highest level (20%) of aqueous extracts of all test plants completely inhibited egg hatch while the control (distilled water only) recorded 93% commulative egg hatch.

  19. Gas Chromatography-Mass Spectrometric Analysis of Essential Oil ...

    African Journals Online (AJOL)

    Conclusion: The study indicates that the essential oil of G. parviflora aerial parts has a potential for development into a natural insecticide/nematicide for control of nematodes and grain storage insects. Keywords: Glycosmis parviflora, Essential oil, Meloidogyne incognita, Sitophilus zeamais, Triboliumcastaneum, Contact ...

  20. Evaluation of sweet orange peel aqueous extract ( citrus sinensis ...

    African Journals Online (AJOL)

    The toxic effect of sweet orange peel (Citrus sinensis) was compared with that of carbofuran, a synthetic nematicide, for the suppression of soil and root population of root-knot nematode Meloidogyne incognita on tomato. Field and laboratory experiments were conducted in year 2002 and repeated in the same period in year ...

  1. Maintenance of genetic variation in automictic root-knot nematodes

    NARCIS (Netherlands)

    Van Der Beek, J. G. ( Hans); Punacker, Laas P.

    2008-01-01

    Differences in amplified fragment length polymorphisms (AFLP) between isolates and between mono-female lines of facultative automictic Meloidogyne hapla race A and obligate apomictic M incognita were determined to test the hypothesis that inverted meiosis occurs. DNA of the parthenogenetic nematode

  2. Effects of belowground biota on primary and secondary metabolites in Brassica oleracea

    NARCIS (Netherlands)

    Wurst, S.; Langel, R.; Rodger, S.; Scheu, S.

    2006-01-01

    Soil organisms in direct and indirect interaction with plant roots affect aboveground herbivores, likely by inducing different plant responses. We investigated the combined effects of the root-knot nematode Meloidogyne incognita (in direct interaction with roots) and the endogeic earthworm

  3. Identification of root-knot nematode species occurring in South Africa using the SCAR-PCR technique

    NARCIS (Netherlands)

    Fourie, H.; Zijlstra, C.; Mc Donald, A.H.

    2001-01-01

    Species of root-knot nematodes occurring in South Africa (Meloidogyne fallax, M. chitwoodi, M. javanica, M. incognita, M. arenaria and M. hapla) were identified and differentiated by the sequence characterised amplified region - polymerase chain reaction (SCAR-PCR) technique. Multiplex internal

  4. Comparative effects of organic soil amendments and carbofuran on ...

    African Journals Online (AJOL)

    This investigation was conducted to evaluate the effects of four organic soil amendments (cow dung, cocoa pod husk, poultry manure and wood ash) and carbofuran treatments on Meloidogyne incognita inducing root-knot disease of cacao seedlings. All soil treatments reduced the nematode population in soil and root of ...

  5. Baseline information on using fermented crude extracts from ...

    African Journals Online (AJOL)

    Bio-pesticides, when used as a post-planting pesticide, are limited by their potential ability to suppress the pest and their degree of phytotoxicity. Baseline information on the suitability of fermented crude extracts (FCE) of Cucumis africanus fruit as a post-planting bio-nematicide was determined on Meloidogyne incognita ...

  6. Gas Chromatography-Mass Spectrometric Analysis of Essential Oil ...

    African Journals Online (AJOL)

    During the screening program for new agrochemicals from Chinese medicinal herbs and wild plants, the essential oil of G. parviflora aerial parts was found to possess insecticidal and nematicidal toxicities against root-knot nematode, Meloidogyne incognita (Kofoid and. White) Chitwood and two grain storage insects.

  7. Evaluation of Tomato Culktivar for resistance to wilt disease and ...

    African Journals Online (AJOL)

    ... and 2.7 kg) respectively in both trials. Tomato-Marina recorded statistically the lowest numbers (9.6 and 11.17) and weights (0.23 kg and 0.73 kg) of fruits respectively in both evaluations. Keywords:Meloidogyne incognita Resistance, Tomato, Wilt disease. Nigerian Journal of Horticultural Science Vol. 10 2005: pp. 30-37 ...

  8. Efficacy of organic soil amendments on the population of meloidne ...

    African Journals Online (AJOL)

    ... period interactions on the tested parameters. However, 8 t/ha of poultry in manure (PM) with 6 weeks decomposition period (PM x 8t/ha x 6 wk) interaction recorded the most outstanding effect other interactions. Keywords: organic soil amendments, Meloidogyne incognita, okra. Nigerian Journal of Horticultural Science Vol ...

  9. Evaluation of edible ginger and turmeric cultivars for root-knot nematode resistance

    Science.gov (United States)

    Edible ginger and turmeric roots are important agricultural commodities for the State of Hawaii. Bacterial wilt, Ralstonia solanacearum, and root-knot nematodes, Meloidogyne spp. are major factors hindering optimum production. An evaluation of tolerance and resistance to M. incognita was undertake...

  10. Screening edible ginger and turmeric cultivars for resistance to root-knot nematodes

    Science.gov (United States)

    Twenty-two edible ginger and turmeric cultivars were screened for resistance or tolerance to Meloidogyne incognita. Plants were raised in 66 L grow bags in greenhouses in Hawaii according to established practices for producing bacterial wilt-free ginger. Three months after planting, each grow bag ...

  11. Nematicidal influence of P.tuberreguim and neem extract on the ...

    African Journals Online (AJOL)

    Efficacy of Pleurotus tuberregium, Neem-leaf ash, carbofuram and combination of the three above were tested in the control of root-knot nematode (Meloidogyne incognita) on Hausa potato. In the green house, twenty-five polythene bags were filled with 10kg of steam-sterilized sandy loam soil and Hausa potato seedlings ...

  12. Scanning electron microscopy of trapped in maize roots by a ...

    African Journals Online (AJOL)

    1993-05-24

    May 24, 1993 ... Dep. Agrjc. Tech. Servo Repub. S. Afr. No. 152: 62-66. WEBSTER, J. 1980. InrroducLion to Fungi, 2nd edn. Camb";dge. University Press, 669 pp. WINDHAM, G.L. & WILLIAMS, W.P. 1987. Host suitability of commercial com hybrids to Meloidogyne arenaria and M. incognita. Ann. App/. NemaJol. 1: 13-16.

  13. appraisal of indigenous pig procution and management practices in ...

    African Journals Online (AJOL)

    Dr Adesope

    might have increased the soil pH towards alkalinity which made carbofuran unstable when added. Synthetic ... Meloidogyne incognita on okra (Abelmoschus esculentus) Nigerian Journal of Pesticides and. Agricultural .... The sampling frame was the list of potato farmers for each Local Government Area/Village selected ...

  14. The influence of climatic features on distribution and infection of root ...

    African Journals Online (AJOL)

    The mean galling infection by the two species was significantly more severe in the humid forest southern region (11-50% of the root system galled) than in the dry Sudan savannah Core North (1-30% of the root system galled). Generally, Meloidogyne incognita caused more severe mean galling infection (11-30% of the root ...

  15. Reaction of some selected soybean varieties ( Glycine max (L) Merril)

    African Journals Online (AJOL)

    In nematode endemic ecological zones, TGX-1985 – 8F is therefore recommended as it proved to contain some specialized genes that conferred a higher level of tolerance against root- knot nematode, Meloidogyne incognita. Key Words: Glycine max, root – knot nematode, Dominant loci, Mi – 1.2, leucine zipper and R ...

  16. Enzyme Activities of Two Recombinant Heme-Containing Peroxidases, TvDyP1 and TvVP2, Identified from the Secretome of Trametes versicolor.

    Science.gov (United States)

    Amara, Sawsan; Perrot, Thomas; Navarro, David; Deroy, Aurélie; Benkhelfallah, Amine; Chalak, Amani; Daou, Marianne; Chevret, Didier; Faulds, Craig B; Berrin, Jean-Guy; Morel-Rouhier, Mélanie; Gelhaye, Eric; Record, Eric

    2018-04-15

    Trametes versicolor is a wood-inhabiting agaricomycete known for its ability to cause strong white-rot decay on hardwood and for its high tolerance of phenolic compounds. The goal of the present work was to gain insights into the molecular biology and biochemistry of the heme-including class II and dye-decolorizing peroxidases secreted by this fungus. Proteomic analysis of the secretome of T. versicolor BRFM 1218 grown on oak wood revealed a set of 200 secreted proteins, among which were the dye-decolorizing peroxidase Tv DyP1 and the versatile peroxidase Tv VP2. Both peroxidases were heterologously produced in Escherichia coli , biochemically characterized, and tested for the ability to oxidize complex substrates. Both peroxidases were found to be active against several substrates under acidic conditions, and Tv DyP1 was very stable over a relatively large pH range of 2.0 to 6.0, while Tv VP2 was more stable at pH 5.0 to 6.0 only. The thermostability of both enzymes was also tested, and Tv DyP1 was globally found to be more stable than Tv VP2. After 180 min of incubation at temperatures ranging from 30 to 50°C, the activity of Tv VP2 drastically decreased, with 10 to 30% of the initial activity retained. Under the same conditions, Tv DyP1 retained 20 to 80% of its enzyme activity. The two proteins were catalytically characterized, and Tv VP2 was shown to accept a wider range of reducing substrates than Tv DyP1. Furthermore, both enzymes were found to be active against two flavonoids, quercetin and catechin, found in oak wood, with Tv VP2 displaying more rapid oxidation of the two compounds. They were tested for the ability to decolorize five industrial dyes, and Tv VP2 presented a greater ability to oxidize and decolorize the dye substrates than Tv DyP1. IMPORTANCE Trametes versicolor is a wood-inhabiting agaricomycete known for its ability to cause strong white-rot decay on hardwood and for its high tolerance of phenolic compounds. Among white-rot fungi, the

  17. Effect of local tree seeds in the control of root knot nematode Meloidogyne javanica (Treub chitwood and growth promotion of chickpea (Cicer arietinum L. and mung bean (Vigna radiata L.

    Directory of Open Access Journals (Sweden)

    Zainab M. Ahmed

    2012-12-01

    Full Text Available Seeds of local trees, such Azadirachta indica A. Juss, Adenanthera pavonina L., Leucaena leucocephala (Lam. de Wit and Eucalyptus spp., were used as aqueous extract at 25, 50 and 100 % concentration to control the activity of Meloidogyne javanica (Treub Citwood. All seed extracts showed lethal effect on M. javanica eggs, and a gradual decrease in egg hatching and an increase in mortality of second-stage juveniles were observed with the increase in extract concentration. L. leucocephala was found to be most effective in reducing egg hatching, whereas 100 % mortality of juveniles was observed in the case of A. indica seed extract. Number of knots was significantly reduced at 100 % concentration when seeds of chick pea and mung bean were treated and soil was drenched with A. pavonina and Eucalyptus spp. seed extract.

  18. Estudo de métodos de infestação para avaliação precoce da resistência do cafeeiro a Meloidogyne exigua Evaluation of four screening methods for resistance to Meloidogyne exigua in coffee seedlings

    Directory of Open Access Journals (Sweden)

    L. C Fazuoli

    1977-01-01

    Full Text Available Procurou-se desenvolver um método para avaliar a resistência de mudas novas de cafeeiros ao nematóide Meloidogyne exigua. Dois experimentos foram realizados, a fim de testar a eficiência de quatro métodos de infestação, em mudas do cultivar mundo novo de Coffea arabica, utilizando-se areia como substrato, em caixas de plástico. A avaliação do ataque pelo nematóide foi realizada subjetivamente, dando-se um ponto na ausência de galhas e cinco pontos na presença de elevado número de galhas nas raízes do cafeeiro. Com base nos parâmetros estudados, verificou-se que 60 dias após a germinação das sementes, o sistema de infestação mais eficiente consistiu na colocação de pequenos pedaços de raízes de cafeeiro com galhas, misturados com o substrato das caixas de germinação, juntamente com uma suspensão em água, de ovos e larvas do nematóide. Em leitura efetuada 150 dias após a germinação, não se verificou diferença significativa entre a infestação provocada através do uso de pequenos pedaços de raízes e com a suspensão contendo ovos e larvas ou a associação de ambos os métodos de infestação. Em todos estes tratamentos notou-se que as raízes dos cafeeiros possuíam elevado número de galhas. Os dados obtidos indicam a possibilidade de realizar testes precoces de resistência ao nematóide M. exigua, o que é de particular interesse no plano geral de melhoramento visando resistência a esse parasita.Four methods of infestation namely: a sand infestation with small pieces of root-knots; b irrigation of sand with nematode eggs and larvae; c the combination of a and b, and d soil infested plus sand, were compared to develop a screening method for the evaluation of resistance of coffee seedlings to Meloidogyne exigua. Seedlings of Mundo Novo cultivar belonging to the Coffea arabica species were obtained by sowing seeds in plastic trays containing sand. A five point scale was used to determine the intensity of the

  19. Evaluation of plant aqueous extracts, added into the soil, on Meloidogyne javanica (Treub, 1885 Chitwood, 1949 / Avaliação de extratos aquosos de várias espécies vegetais, aplicados ao solo, sobre Meloidogyne javanica (Treub, 1885 Chitwood, 1949

    Directory of Open Access Journals (Sweden)

    Leandro Grassi de Freitas

    2009-10-01

    Full Text Available The use of plant extracts with nematicidal properties to control plant nematodes can be a useful alternative to small farmers, regarding its low cost and non-toxic effects. The effect of the addition into the soil of aqueous extracts of 20 plant species on Meloidogyne javanica in plants of tomato was studied at greenhouse conditions. These were divided into two groups and evaluated in two separate experiments.The soil in the 2.0 L pots was infested with 5,000 eggs and, in the same day, it was applied 20 mL of aqueous extracts of the 20 plant species (Chrysanthemum parthenium, Arctium lappa, Cymbopogon citratus, Bacharis trimera, Equisetum sp., Melia azedarach, Mentha sp., Ricinus communis, Ocimum basilicum, Momordica charantia, Ruta graveolens, Coleus barbatus, Symphitum officinalis, Polygonum acre, Canavalia ensiformis, Foeniculum vulgare, Petiveria alliacea, Ageratum conyzoides, Mucuna pruriens and Azadirachta indica. Distilled water was used as control. Sixty days later, were evaluated for plant height, the fresh weight of shoot and root and the numbers of galls and eggs per root system. The extracts of Mentha sp., Arctium lappa and Ricinus communis reduced the number of galls of M. javanica in 75.6%; 65.7% and 54.4%; and the number of eggs in 81.7%, 75.9% and 56.6%, respectively.O uso de extratos vegetais com propriedades nematicidas no controle de fitonematóides representa mais uma alternativa para os pequenos produtores, com valor prático e econômico, e sem riscos de contaminação do ambiente. A adição ao solo dos extratos aquosos de 20 espécies de plantas foi avaliada sobre a população de Meloidogyne javanica em plantas de tomateiro, em casa de vegetação. Estas foram divididas em dois grupos e avaliadas em dois experimentos separados. No mesmo dia em que se infestou o solo com 5.000 ovos do nematóide, adicionou-se 20 mL dos extratos aquosos obtidos de folhas de artemísia (Chrysanthemum parthenium, bardana (Arctium lappa

  20. Perilous terra incognita--open-access journals.

    Science.gov (United States)

    Balon, Richard

    2014-04-01

    The author focuses on a new rapidly spreading practice of publication in open-access journals. The pros and cons of open-access journals are discussed. Publishing in these journals may be cost prohibitive for educators and junior faculty members. Some authors may be lured by the ease of publishing in open-access journals (and their, at times, inflated self-description, e.g., "international", "scientific"), and their possibly valuable contributions will escape the attention of Academic Psychiatry readership in the vast sea of open-access journals. The readership may be flooded with a large number of low-quality articles (maybe not even properly peer-reviewed) from open-access journals. It may take some time to sort out what is and what is not relevant and useful. Open-access publishing represents a problematic and controversial practice and may be associated with a conflict of interest for the editors and publishers of these journals.

  1. Survey of Nematodes on Coffee in Hawaii

    Science.gov (United States)

    Schenck, S.; Schmitt, D. P.

    1992-01-01

    Surveys of coffee fields in Hawaii during 1989-1991 indicated the presence of 10 nematode species in 8 genera. After coffee was planted in fields previously in sugarcane, populations of Criconemella sp. and Pratylenchus zeae gradually decreased, while Rotylenchulus reniformis and, in one field, Meloidogyne incognita, increased in numbers. Coffee is a poor host of R. reniformis, but weeds in coffee plantations may support this nematode. At present, nematodes pose no serious threat to Hawaii's expanding coffee industry. PMID:19283060

  2. Page 1 African Crop Science Journal,Vol. 2. No.4, pp. 355-359 ...

    African Journals Online (AJOL)

    Many nematode species have been reported associated with cassava but few are reported to have caused economic damage to the crop. ... d'entre elles ont été créditées de dégâts d'importance économique pour la culture. Meloidogyne incognita, ... tissue and reproduce, so the galls enlarge and coalesce. Nematodes ...

  3. Reproduction of Plant-parasitic Nematodes on Winter Rapeseed (Brassica napus ssp. oleiferas)

    OpenAIRE

    Bernard, E. C.; Montgomery-Dee, M. E.

    1993-01-01

    The reproduction of isolates of five plant-parasitic nematode species on the winter rapeseed cultivars Bridger, Gorzanski, H-47, Lindora, and Viking was evaluated. Each cultivar was a good host for Helicotylenchus pseudorobustus, Meloidogyne hapla, and M. incognita, All rapeseed cultivars were poor hosts for Pratylenchus scribneri, in comparison with a susceptible reference host. Heterodera glycines females rarely developed on any cultivar, but low numbers of juveniles invaded roots and males...

  4. Survey of Nematodes on Coffee in Hawaii

    OpenAIRE

    Schenck, S.; Schmitt, D. P.

    1992-01-01

    Surveys of coffee fields in Hawaii during 1989-1991 indicated the presence of 10 nematode species in 8 genera. After coffee was planted in fields previously in sugarcane, populations of Criconemella sp. and Pratylenchus zeae gradually decreased, while Rotylenchulus reniformis and, in one field, Meloidogyne incognita, increased in numbers. Coffee is a poor host of R. reniformis, but weeds in coffee plantations may support this nematode. At present, nematodes pose no serious threat to Hawaii's ...

  5. Efecto de la incorporación de plantas antagónicas sobre la actividad parasítica del nematodo del nudo de la raíz Meloidogyne hapla en un cultivo de zanahoria bajo condiciones de invernadero Effect of the incorporation of antagonistic plants on the parasitic activity of the root-knot nematode Meloidogyne hapla in a greenhouse carrot crop

    Directory of Open Access Journals (Sweden)

    Alvarez César G.

    1998-12-01

    Full Text Available En el Centro de Investigaciones y Asesorías Agroindustriales (CIAA de la Universidad Jorge Tadeo Lozano, localidad de Chía (Cundinamarca, se llevó a cabo un ensayo bajo condiciones de invernadero para evaluar el efecto de la incorporación de material vegetal fresco proveniente de siete especies de plantas (Tagetes zipaquirensis, T. erecta, Brassica cempestris, Bidens pilosa, Ruta graveolens, Taraxacum officinale y Ricinus communis sobre el rendimiento y calidad comercial de un cultivo de zanahoria (Daucus carota varo Mokum y sobre la densidad poblacional del nemátodo del nudo de la raíz Meloidogyne hapla y la intensidad de la nodulación asociada con su establecimiento sobre plantas de zanahoria. No se encontraron diferencias significativas en cuanto al rendimiento biológico de la zanahoria, pero los tratamientos con R. graveolens y T. officinale mostraron la mayor producción de zanahoria comercial (3070 g.m·2 y 2270 g.m·2 con diferencias significativas respecto al testigo (1090 g.m-2. Las densidades poblacionales finales de juveniles infectivos [J2] de M. hapla fueron significativamente más bajas en los tratamientos con R. communis, T. officinale, B. campestris y T. erecta (65-130 J2/100 g de suelo que en el testigo (435 J2/100g de suelo. En la nodulación se encontraron diferencias significativas entre el testigo (5.0 nudos/ápice de zanahoria y los demás tratamientos (1,9-2,6 nudos/ápice de zanahoria.A trial was conducted at the Centro de Investigaciones y Asesorías Agroindustriales (CIAA of the Universidad Jorge Tadeo Lozano, Chía (Cundinamarca under greenhouse conditions to assess the effect of incorporating fresh above-ground material of seven plant species (Tagetes zipaquirensis, T. erecta, Brassica cempestris. Bidens pilosa, Rufa graveolens, Taraxacum officinale and Ricínus communis on the yield and commercial quality of a carrot (Daucus carota crop var. Mokum, on the population density of Meloidogyne hapla and on the

  6. The complex hybrid origins of the root knot nematodes revealed through comparative genomics

    Directory of Open Access Journals (Sweden)

    David H. Lunt

    2014-05-01

    Full Text Available Root knot nematodes (RKN can infect most of the world’s agricultural crop species and are among the most important of all plant pathogens. As yet however we have little understanding of their origins or the genomic basis of their extreme polyphagy. The most damaging pathogens reproduce by obligatory mitotic parthenogenesis and it has been suggested that these species originated from interspecific hybridizations between unknown parental taxa. We have sequenced the genome of the diploid meiotic parthenogen Meloidogyne floridensis, and use a comparative genomic approach to test the hypothesis that this species was involved in the hybrid origin of the tropical mitotic parthenogen Meloidogyne incognita. Phylogenomic analysis of gene families from M. floridensis, M. incognita and an outgroup species Meloidogyne hapla was carried out to trace the evolutionary history of these species’ genomes, and we demonstrate that M. floridensis was one of the parental species in the hybrid origins of M. incognita. Analysis of the M. floridensis genome itself revealed many gene loci present in divergent copies, as they are in M. incognita, indicating that it too had a hybrid origin. The triploid M. incognita is shown to be a complex double-hybrid between M. floridensis and a third, unidentified, parent. The agriculturally important RKN have very complex origins involving the mixing of several parental genomes by hybridization and their extreme polyphagy and success in agricultural environments may be related to this hybridization, producing transgressive variation on which natural selection can act. It is now clear that studying RKN variation via individual marker loci may fail due to the species’ convoluted origins, and multi-species population genomics is essential to understand the hybrid diversity and adaptive variation of this important species complex. This comparative genomic analysis provides a compelling example of the importance and complexity of

  7. INFLUENCE OF ROOTSTOCKS ON Fusarium WILT, NEMATODE INFESTATION, YIELD AND FRUIT QUALITY IN WATERMELON PRODUCTION

    Directory of Open Access Journals (Sweden)

    Juan Carlos Álvarez-Hernández

    2015-08-01

    Full Text Available Cucurbita maxima x Cucurbita moschata rootstock are used to prevent infection with Fusarium oxysporum f. sp. niveum in watermelon production; however, this rootstock is not effective against nematode attack. Because of their vigor, the grafted plants can be planted at lower plant densities than the non-grafted plants. The tolerance to Fusarium oxysporum f. sp. niveum and Meloidogyne incognita was assessed in watermelon plants grafted onto a hybrid of Citrullus lanatus cv Robusta or the Cucurbita maxima x Cucurbita moschata cv Super Shintoza rootstocks. The densities of plants were 2083 and 4166 plants ha-1. Non-grafted watermelons were the controls. The Crunchy Red and Sangría watermelon cultivars were used as the scions, it the latter as a pollinator. The experiments were performed for two production cycles in soils infested with Fusarium oxysporum f. sp. niveum and Meloidogyne incognita. The incidence of Fusarium oxysporum f. sp. niveum was significantly greater in the non-grafted than in the grafted plants. The grafted plants presented similar resistance to Fusarium regardless of the rootstock. The root-knot galling index for Meloidogyne incognita was significantly lower in plants grafted onto Citrullus lanatus cv Robusta than onto the other rootstock. The yields of plants grafted onto Citrullus lanatus cv Robusta grown at both plant densities were significantly higher than in the other treatments.

  8. Mi-1-Mediated Nematode Resistance in Tomatoes is Broken by Short-Term Heat Stress but Recovers Over Time.

    Science.gov (United States)

    Marques de Carvalho, Luciana; Benda, Nicole D; Vaughan, Martha M; Cabrera, Ana R; Hung, Kaddie; Cox, Thomas; Abdo, Zaid; Allen, L Hartwell; Teal, Peter E A

    2015-06-01

    Tomato (Solanum lycopersicum L.) is among the most valuable agricultural products, but Meloidogyne spp. (root-knot nematode) infestations result in serious crop losses. In tomato, resistance to root-knot nematodes is controlled by the gene Mi-1, but heat stress interferes with Mi-1-associated resistance. Inconsistent results in published field and greenhouse experiments led us to test the effect of short-term midday heat stress on tomato susceptibility to Meloidogyne incognita race 1. Under controlled day/night temperatures of 25°C/21°C, 'Amelia', which was verified as possessing the Mi-1 gene, was deemed resistant (4.1 ± 0.4 galls/plant) and Rutgers, which does not possess the Mi-1 gene, was susceptible (132 ± 9.9 galls/plant) to M. incognita infection. Exposure to a single 3 hr heat spike of 35°C was sufficient to increase the susceptibility of 'Amelia' but did not affect Rutgers. Despite this change in resistance, Mi-1 gene expression was not affected by heat treatment, or nematode infection. The heat-induced breakdown of Mi-1 resistance in 'Amelia' did recover with time regardless of additional heat exposures and M. incognita infection. These findings would aid in the development of management strategies to protect the tomato crop at times of heightened M. incognita susceptibility.

  9. Growth-dependent secretome of Candida utilis

    NARCIS (Netherlands)

    Buerth, C.; Heilmann, C.J.; Klis, F.M.; de Koster, C.G.; Ernst, J.F.; Tielker, D.

    2011-01-01

    Recently, the food yeast Candida utilis has emerged as an excellent host for production of heterologous proteins. Since secretion of the recombinant product is advantageous for its purification, we characterized the secreted proteome of C. utilis. Cells were cultivated to the exponential or

  10. Robust signaling networks of the adipose secretome

    NARCIS (Netherlands)

    Breitling, Rainer

    Type 2 diabetes is a prototypical complex systems disease that has a strong hereditary component and etiologic links with a sedentary lifestyle, overeating and obesity. Adipose tissue has been shown to be a central driver of type 2 diabetes progression, establishing and maintaining a chronic state

  11. Evaluación de la actividad biocontroladora de Arthrobotrys sp. y Paecilomyces sp. sobre Meloidogyne javanica in vitro y bajo condiciones de invernadero en crisantemo (Drendranthema grandiflora Andernson

    Directory of Open Access Journals (Sweden)

    Dávila Lida

    2005-06-01

    Full Text Available

    Para evaluar la acción biocontroladora de Arthrobotrys sp. y Paecilomyces sp. sobre huevos y larvas de Meloidogyne javanica en crisantemo, se realizaron prue­bas in vitro y en invernadero. Se tomaron 500 larvas y 500 huevos del nematodo contenidos en suspensiones de agua estéril y se trataron con concentraciones de 1,3· 106; 1,4· 107 y 6,4· 106; 1,14· 107 conidias/mL de Arthrobotrys sp. y Paecilomyces sp. Se observó bajo estereos­copio cada 24 horas, mientras la acción de los hongos sobre M. javanica se cuantificó a las 72 horas de incu­bación, con un índice de control mayor de 50% sobre larvas y huevos. En invernadero se sembraron esquejes en suelo con compost estéril bajo un diseño estadístico de bloques completos al azar. Los tratamientos fueron: hongos de forma individual y combinada; compost sólo y combinado con cada hongo; carbofurán (Fura­dan®; testigo patógeno y testigo absoluto. A los 45 días después de la inoculación se evaluó el peso fresco de la raíz, la longitud de la raíz, el número de nódulos y el de individuos de M. javanica ambulatorios en 100 g de suelo. Mediante la prueba de Duncan (5% se determi­nó que el tratamiento de hongos en forma combinada controló a M. javanica, con un promedio de 18 nódulos en raíz, y fue menos eficiente comparado con el control individual, con un promedio de 7 y 8 nódulos en raíz respectivamente a los 45 días de transcurrida la infec­ción. El compost no ejerció control sobre M. javanica pues presentó un promedio de 50 nódulos en raíz; el tratamiento (Furadán® exhibió un promedio de 25 nó­dulos en raíz, mostrando diferencias

  12. Ação nematicida de extratos de alho, mostarda, pimenta malagueta, de óleo de mostarda e de dois produtos à base de capsainóides e alil isotiocianato sobre juvenis de Meloidogyne javanica, (treub Chitwood, 1949, em casa de vegetação

    Directory of Open Access Journals (Sweden)

    Wânia dos Santos Neves

    2009-12-01

    Full Text Available Neves, W.S; Freitas, L.G.; Coutinho, M.M.; Giaretta-Dallemole, R.; Fabry, C.F.S.; Dhingra, O.D. & Ferraz, S. Atividade nematicida de extratos botânicos de pimenta malagueta (Capsicum frutescens, mostarda (Brassica campestris e alho (Allium sativum sobre o nematóide das galhas, Meloidogyne javanica, em casa de vegetação. Summa Phytopathologica, v.35, n.4, p.255-261, 2009 O experimento teve como objetivo avaliar a atividade nematicida de extratos botânicos dos frutos de pimenta malagueta (Capsicum frutescens, plantas de mostarda (Brassica campestris, de bulbos de alho (Allium sativum e óleo de mostarda sobre o nematóide das galhas, Meloidogyne javanica, em tomateiro em casa de vegetação e posteriormente comparar os extratos que apresentassem maior redução de número de galhas e de ovos com dois produtos à base de capsaicina, capsainóides e alil isotiocianato. Uma mistura peneirada de solo e areia na proporção 1:1 (v:v foi colocada em vasos de plástico e infestada com 4000 ovos de M. javanica. Quatro dias após 20 mL de cada extrato, na concentração de 1000 ppm, foram espalhados sobre o solo. Apenas água foi derramada sobre o solo infestado no tratamento testemunha. Mudas de tomate com 20 dias de idade foram transplantadas quatro dias após a colocação dos extratos ao solo. Após quarenta e cinco dias avaliou-se o número de ovos e o número de galhas do sistema radicular de cada planta. Os extratos clorofórmico e cetônico de pimenta malagueta e o óleo de mostarda apresentaram melhor controle do nematóide, diferindo estatisticamente da testemunha quanto ao número de galhas. Porém, somente o óleo de mostarda reduziu significativamente o número de ovos quando comparado com a testemunha. Os extratos cetônico e clorofórmico de pimenta e o óleo de mostarda reduziram em 34,5%, 40,4% e 99,9% o número de galhas, respectivamente e o óleo de mostarda reduziu em 99,9% o número de ovos. No experimento seguinte foram avaliados

  13. Influence of root-knot nematode infestation on antioxidant enzymes, chlorophyll content and growth in Pogostemon cablin (Blanco) Benth.

    Science.gov (United States)

    Bhau, B S; Borah, Bitupon; Ahmed, Reshma; Phukon, P; Gogoi, Barbi; Sarmah, D K; Lal, M; Wann, S B

    2016-04-01

    Plants adapt themselves to overcome adverse environmental conditions, and this involves a plethora of concurrent cellular activities. Physiological experiments or metabolic profiling can quantify this response. Among several diseases of Pogostemon cablin (Blanco) Benth. (Patchouli), root-knot nematode infection caused by Meloidogyne incognita (Kofoid and White) Chitwood causes severe damage to the plant and hence, the oil production. In the present study, we identified M. incognita morphologically and at molecular level using sequenced characterized amplified region marker (SCAR). M. incognita was artificially inoculated at different levels of second stage juveniles (J₂) to examine the effect on Patchouli plant growth parameters. Peroxidase and polyphenol oxidase enzyme activity and changes in the total phenol and chlorophyll contents in M. incognita was also evaluated in response to infection. The results have demonstrated that nematode infestation leads to increased peroxidase activities in the leaves of the patchouli plants and thereby, increase in phenolic content as a means of defence against nematode infestation. Chlorophyll content was also found decreased but no changes in polyphenol oxidase enzyme activity.

  14. Crescimento e respostas enzimáticas do feijoeiro caupi sob estresse hídrico e nematoide de galhas

    OpenAIRE

    Sousa, Carmem C. M. de; Pedrosa, Elvira M. R.; Rolim, Mario M.; Oliveira Filho, Ronaldo A. de; Souza, Marcela A. L. M. de; Pereira Filho, João V.

    2015-01-01

    Considerando a importância do feijoeiro caupi no Nordeste brasileiro, o presente estudo teve, por objetivo, avaliar o crescimento e os aspectos bioquímicos do cultivar EPACE-10 submetido a estresse hídrico e parasitismo de Meloidogyne incognita em condições de casa de vegetação. O delineamento adotado foi de blocos ao acaso em esquema fatorial 2 (com e sem nematoide) × 2 (com e sem estresse hídrico), com seis repetições. O nível de estresse hídrico aplicado (50% da capacidade do campo) diminu...

  15. Virulence of the zoonotic agent of leptospirosis: still terra incognita?

    Science.gov (United States)

    Picardeau, Mathieu

    2017-05-01

    Pathogenic leptospires are the bacterial agents of leptospirosis, which is an emerging zoonotic disease that affects animals and humans worldwide. The success of leptospires as pathogens is explained by their spiral shape and endoflagellar motility (which enable these spirochetes to rapidly cross connective tissues and barriers), as well as by their ability to escape or hijack the host immune system. However, the basic biology and virulence factors of leptospires remain poorly characterized. In this Review, we discuss the recent advances in our understanding of the epidemiology, taxonomy, genomics and the molecular basis of virulence in leptospires, and how these properties contribute to the mechanism of pathogenesis of leptospirosis.

  16. Gabriel Kostelnyk - terra incognita ukrajinske (i hrvatske) filozofije

    OpenAIRE

    Hirnyk, Oleh

    2005-01-01

    Gabriel Kostelnyk (1886  1948) spada u najznačajnije ukrajinske filozofe prve polovice 20. st. Rođen je u Bačkoj (Vojvodina) u selu Ruski Krstur. Kao gimnazijalac u Zagrebu počinje pisati pjesme na hrvatskom. Studij teologije započinje u Zagrebu i završava u Lavovu (Galicija, zapadna Ukrajina). Godine 1913. stekao je doktorat iz područja filozofije na Sveučilištu u Fribourgu (Švicarska). Većinu svog života je proveo u Lavovu poučavajući filozofiju i pišući brojna filozofska djela. Posebno ga...

  17. Terra Incognita: Explanation and Reductionism in Earth Science

    NARCIS (Netherlands)

    Kleinhans, M.G.

    2005-01-01

    The present paper presents a philosophical analysis of earth science, a discipline that has received relatively little attention from philosophers of science. We focus on the question of whether earth science can be reduced to allegedly more fundamental sciences, such as chemistry or physics. In

  18. Extra-terra incognita: Martian maps in the digital age.

    Science.gov (United States)

    Messeri, Lisa

    2017-02-01

    Science and technology studies (STS) and critical cartography are both asking questions about the ontological fixity of maps and other scientific objects. This paper examines how a group of NASA computer scientists who call themselves The Mapmakers conceptualizes and creates maps in service of different commitments. The maps under construction are those of alien Mars, produced through partnerships that NASA has established with Google and Microsoft. With the goal of bringing an experience of Mars to as many people as possible, these maps influence how we imagine our neighbouring planet. This paper analyzes two attributes of the map, evident in both its representation and the attending cartographic practices: a sense of Mars as dynamic and a desire for a democratic experience of Mars in which up-to-date Mars data can be intuitively accessed not only by scientists but by lay users as well. Whereas a democratic Mars promises users the ability to decide how to interact with the map and understand Mars, dynamic Mars imposes a more singular sense of Mars as a target of continued robotic and maybe even human exploration. Because maps of Mars have a different (and arguably less complex) set of social and political commitments than those of Earth, they help us see how different goals contradict and complement each other in matters of exploration and state-craft relevant both to other worlds and our own.

  19. Identifikasi Fusarium dan Nematoda Parasitik yang Berasosiasi dengan Penyakit Kuning Lada di Kalimantan Barat

    Directory of Open Access Journals (Sweden)

    Suryanti Suryanti

    2015-07-01

    Full Text Available Pepper (Piper nigrum, known as the “King of Spices” is one of the most important spices. In the international market, Indonesian pepper has high selling value, due to its flavor characteristics. Pepper yellowing disease is one of the most important disease that caused the decrease of pepper production and become the main problem in the cultivation of pepper in West Kalimantan. This research was conducted to determine the major causal agent of leaf yellowing disease of pepper. The Fusarium associated with diseased plant were isolated from the symptomatic plant and nematodes were isolated from the root with leaf yellowing symptom. The Fusarium isolates were cultured on agar medium, and the nematode was cultured on tomato plant. From diseased pepper in West Kalimantan, it was isolated 4 Fusarium isolates and plant parasitic nematode Meloidogyne. The result showed that H isolate of Fusarium was the most virulent isolate and identified asFusarium solani. The Meloidogyne was identified by the female perenial patern.The nematode was identified as Meloidogyne incognita. INTISARI Lada (Piper nigrum L. merupakan salah satu jenis rempah penting yang telah dikenal sebagai “King of Spices”. Di pasar internasional, lada Indonesia mempunyai daya jual tinggi karena cita rasanya yang khas. Salah satu kendala dalam budidaya lada adalah adanya penyakit kuning lada dan sampai saat ini menjadi masalah utama pada pertanaman lada di Kalimantan Barat. Informasi tentang patogen utama yang berinteraksi dengan penyakit kuning lada masih sangat terbatas, sehingga penelitian ini bertujuan untuk mengidentifikasi patogen utama yang berasosiasi dengan penyakit kuning lada. Isolasi Fusarium dilakukan dari batang lada dan isolasi nematoda dilakukan dari akar lada yang bergejala penyakit kuning di Kalimantan Barat. Fusarium hasil isolasi dikulturkan dalam medium agar, sedangkan nematoda hasil isolasi dikulturkan dalam akar tomat. Dari hasil isolasi berhasil didapatkan

  20. Bacterial antagonists of fungal pathogens also control root-knot nematodes by induced systemic resistance of tomato plants.

    Science.gov (United States)

    Adam, Mohamed; Heuer, Holger; Hallmann, Johannes

    2014-01-01

    The potential of bacterial antagonists of fungal pathogens to control the root-knot nematode Meloidogyne incognita was investigated under greenhouse conditions. Treatment of tomato seeds with several strains significantly reduced the numbers of galls and egg masses compared with the untreated control. Best performed Bacillus subtilis isolates Sb4-23, Mc5-Re2, and Mc2-Re2, which were further studied for their mode of action with regard to direct effects by bacterial metabolites or repellents, and plant mediated effects. Drenching of soil with culture supernatants significantly reduced the number of egg masses produced by M. incognita on tomato by up to 62% compared to the control without culture supernatant. Repellence of juveniles by the antagonists was shown in a linked twin-pot set-up, where a majority of juveniles penetrated roots on the side without inoculated antagonists. All tested biocontrol strains induced systemic resistance against M. incognita in tomato, as revealed in a split-root system where the bacteria and the nematodes were inoculated at spatially separated roots of the same plant. This reduced the production of egg masses by up to 51%, while inoculation of bacteria and nematodes in the same pot had only a minor additive effect on suppression of M. incognita compared to induced systemic resistance alone. Therefore, the plant mediated effect was the major reason for antagonism rather than direct mechanisms. In conclusion, the bacteria known for their antagonistic potential against fungal pathogens also suppressed M. incognita. Such "multi-purpose" bacteria might provide new options for control strategies, especially with respect to nematode-fungus disease complexes that cause synergistic yield losses.

  1. Incidence and Identification of Root-Knot Nematode in Plastic-House Fields of Central Area of Korea

    Directory of Open Access Journals (Sweden)

    Hyoung Rai Ko

    2017-12-01

    Full Text Available To investigate occurrence of root-knot nematode (RKN in plastic house of central area of Korea, 132 soil samples were collected in cucumber, water melon, tomato, red pepper and strawberry fields from 2013 to 2015. Among 132 soil samples, 65 soil samples (49% were infested with RKN and mean density of RKN was 178 second-stage juveniles per 100 cm³ soil (min. 1 ~ max. 3,947. The frequency of RKN by regional was the highest in Chuncheon with 80%, followed by Cheonan (68%, Nonsan (36%, Buyeo (33% and Yesan (30%. The frequency of RKN by crops was the highest in tomato with 83%, followed by cucumber (61%, strawberry (41%, red pepper (30%, watermelon (26%. To identify the species of RKN, fifteen populations were selected for representative populations. As a phylogenetic analysis of 15 populations, southern root-knot nematode (Meloidogyne incognita, peanut root-knot nematode (M. arenaria and northern root-knot nematode (M. hapla were identified with 47%, 20% and 33% ratio, respectively. In crops, M. incognita, M. arenaria and M. hapla were detected in tomato, M. incognita and M. arenaria were detected in cucumber and watermelon, and M. hapla was detected in strawberry and lettuce. Thus, there should be a continuous management to major species of each crops to prevent dispersal of RKN damages.

  2. The application of Arabidopsis thaliana in studying tripartite interactions among plants, beneficial fungal endophytes and biotrophic plant-parasitic nematodes.

    Science.gov (United States)

    Martinuz, Alfonso; Zewdu, Getaneh; Ludwig, Nicole; Grundler, Florian; Sikora, Richard A; Schouten, Alexander

    2015-04-01

    The research demonstrated that Arabidopsis can be used as a model system for studying plant-nematode-endophyte tripartite interactions; thus, opening new possibilities for further characterizing the molecular mechanisms behind these interactions. Arabidopsis has been established as an important model system for studying plant biology and plant-microbe interactions. We show that this plant can also be used for studying the tripartite interactions among plants, the root-knot nematode Meloidogyne incognita and a beneficial endophytic isolate of Fusarium oxysporum, strain Fo162. In various plant species, Fo162 can systemically reduce M. incognita infection development and fecundity. Here it is shown that Fo162 can also colonize A. thaliana roots without causing disease symptoms, thus behaving as a typical endophyte. As observed for other plants, this endophyte could not migrate from the roots into the shoots and leaves. Direct inoculation of the leaves also did not result in colonization of the plant. A significant increase in plant fresh weight, root length and average root diameter was observed, suggesting the promotion of plant growth by the endophyte. The inoculation of A. thaliana with F. oxysporum strain Fo162 also resulted in a significant reduction in the number of M. incognita juveniles infecting the roots and ultimately the number of galls produced. This was also observed in a split-root experiment, in which the endophyte and nematode were spatially separated. The usefulness of Arabidopsis opens new possibilities for further dissecting complex tripartite interactions at the molecular and biochemical level.

  3. Organtropic Metastatic Secretomes and Exosomes in Breast Cancer

    Science.gov (United States)

    2016-10-01

    significantly increase diagnostic options, improve treatment efficacy and survival of breast cancer patients. The objectives of our proposal are to...has tremendous potential to improve the diagnosis, prognosis and treatment of breast cancer . We hypothesized that tumor and stromal cells...organ-tropic metastasis of breast cancer to bone and lung has tremendous potential impact on improving the diagnosis, prognosis and treatment of

  4. Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum

    Directory of Open Access Journals (Sweden)

    Maíra de Freitas Pereira

    2018-02-01

    Full Text Available Cenococcum geophilum is an ectomycorrhizal fungus with global distribution in numerous habitats and associates with a large range of host species including gymnosperm and angiosperm trees. Moreover, C. geophilum is the unique ectomycorrhizal species within the clade Dothideomycetes, the largest class of Ascomycetes containing predominantly saprotrophic and many devastating phytopathogenic fungi. Recent studies highlight that mycorrhizal fungi, as pathogenic ones, use effectors in form of Small Secreted Proteins (SSPs as molecular keys to promote symbiosis. In order to better understand the biotic interaction of C. geophilum with its host plants, the goal of this work was to characterize mycorrhiza-induced small-secreted proteins (MiSSPs that potentially play a role in the ectomycorrhiza formation and functioning of this ecologically very important species. We combined different approaches such as gene expression profiling, genome localization and conservation of MiSSP genes in different C. geophilum strains and closely related species as well as protein subcellular localization studies of potential targets of MiSSPs in interacting plants using in tobacco leaf cells. Gene expression analyses of C. geophilum interacting with Pinus sylvestris (pine and Populus tremula × Populus alba (poplar showed that similar sets of genes coding for secreted proteins were up-regulated and only few were specific to each host. Whereas pine induced more carbohydrate active enzymes (CAZymes, the interaction with poplar induced the expression of specific SSPs. We identified a set of 22 MiSSPs, which are located in both, gene-rich, repeat-poor or gene-sparse, repeat-rich regions of the C. geophilum genome, a genome showing a bipartite architecture as seen for some pathogens but not yet for an ectomycorrhizal fungus. Genome re-sequencing data of 15 C. geophilum strains and two close relatives Glonium stellatum and Lepidopterella palustris were used to study sequence conservation of MiSSP-encoding genes. The 22 MiSSPs showed a high presence-absence polymorphism among the studied C. geophilum strains suggesting an evolution through gene gain/gene loss. Finally, we showed that six CgMiSSPs target four distinct sub-cellular compartments such as endoplasmic reticulum, plasma membrane, cytosol and tonoplast. Overall, this work presents a comprehensive analysis of secreted proteins and MiSSPs in different genetic level of C. geophilum opening a valuable resource to future functional analysis.

  5. Biological Functions of the Secretome of Neisseria meningitidis

    Directory of Open Access Journals (Sweden)

    Jan Tommassen

    2017-06-01

    Full Text Available Neisseria meningitidis is a Gram-negative bacterial pathogen that normally resides as a commensal in the human nasopharynx but occasionally causes disease with high mortality and morbidity. To interact with its environment, it transports many proteins across the outer membrane to the bacterial cell surface and into the extracellular medium for which it deploys the common and well-characterized autotransporter, two-partner and type I secretion mechanisms, as well as a recently discovered pathway for the surface exposure of lipoproteins. The surface-exposed and secreted proteins serve roles in host-pathogen interactions, including adhesion to host cells and extracellular matrix proteins, evasion of nutritional immunity imposed by iron-binding proteins of the host, prevention of complement activation, neutralization of antimicrobial peptides, degradation of immunoglobulins, and permeabilization of epithelial layers. Furthermore, they have roles in interbacterial interactions, including the formation and dispersal of biofilms and the suppression of the growth of bacteria competing for the same niche. Here, we will review the protein secretion systems of N. meningitidis and focus on the functions of the secreted proteins.

  6. Comparative studies of the secretome of fungus-growing ants

    DEFF Research Database (Denmark)

    Linde, Tore; Grell, Morten Nedergaard; Schiøtt, Morten

    2009-01-01

    Leafcutter ants of the species Acromyrmex echinatior live in symbiosis with the fungus Leucoagaricus gongylophorus. The ants harvest fragments of leaves and carry them to the nest where they place the material on the fungal colony. The fungus secretes a wide array of proteins to degrade the leaves...... into nutrients that the ants can feed on. The focus of this study is to discover, characterize and compare the secreted proteins. In order to do so cDNA libraries are constructed from mRNA extracted from the fungus material. The most efficient technology to screen cDNA libraries selectively for secreted...

  7. The salivary secretome of the biting midge, Culicoides sonorensis

    Directory of Open Access Journals (Sweden)

    Christopher J. Lehiy

    2014-06-01

    Full Text Available Culicoides biting midges (Diptera: Ceratopogonidae are hematophagous insects with over 1400 species distributed throughout the world. Many of these species are of particular agricultural importance as primary vectors of bluetongue and Schmallenberg viruses, yet little is known about Culicoides genomics and proteomics. Detailed studies of members from other blood-feeding Dipteran families, including those of mosquito (Culicidae and black fly (Simuliidae, have shown that protein components within the insect’s saliva facilitate the blood feeding process. To determine the protein components in Culicoides sonorensis midges, secreted saliva was collected for peptide sequencing by tandem mass spectrometry. Forty-five secreted proteins were identified, including members of the D7 odorant binding protein family, Kunitz-like serine protease inhibitors, maltase, trypsin, and six novel proteins unique to C. sonorensis. Identifying the complex myriad of proteins in saliva from blood-feeding Dipteran species is critical for understanding their role in blood feeding, arbovirus transmission, and possibly the resulting disease pathogenesis.

  8. Mapping the Pathways to Staphylococcal Pathogenesis by Comparative Secretomics

    NARCIS (Netherlands)

    Sibbald, M. J. J. B.; Ziebandt, A. K.; Engelmann, S.; Hecker, M.; de Jong, A.; Harmsen, H. J. A.; Raangs, G. C.; Stokroos, I.; Arends, J. P.; Dubois, J. Y. F.; van Dijl, J. A.

    The gram-positive bacterium Staphylococcus aurcus is a frequent component of the human microbial flora that can turn into a dangerous pathogen. As such, this organism is capable of infecting almost every tissue and organ system in the human body. It does so by actively exporting a variety of

  9. SILAC-based comparative analysis of pathogenic Escherichia coli secretomes

    DEFF Research Database (Denmark)

    Boysen, Anders; Borch, Jonas; Krogh, Thøger Jensen

    2015-01-01

    proteome analysis have the potential to discover both classes of proteins and hence form an important tool for discovering therapeutic targets. Adherent-invasive Escherichia coli (AIEC) and Enterotoxigenic E. coli (ETEC) are pathogenic variants of E. coli which cause intestinal disease in humans. AIEC......-term protection are still needed. In order to identify proteins with therapeutic potential, we have used mass spectrometry-based Stable Isotope Labeling with Amino acids in Cell culture (SILAC) quantitative proteomics method which allows us to compare the proteomes of pathogenic strains to commensal E. coli....... In this study, we grew the pathogenic strains ETEC H10407, AIEC LF82 and the non-pathogenic reference strain E. coli K-12 MG1655 in parallel and used SILAC to compare protein levels in OMVs and culture supernatant. We have identified well-known virulence factors from both AIEC and ETEC, thus validating our...

  10. Secretome Analysis of Human Primary Fibroblasts Undergoing Senescence

    DEFF Research Database (Denmark)

    Rogowska-Wrzesinska, Adelina; Micutkova, Lucia; Diener, Thomas

    alpha-1(XII) chain and fibulin 3. Results obtained until now are in agreement with the suggested shift from matix - synthesizing to matrix - degrading phenotype in senescent fibroblasts except the increased secretion of metalloproteinase inhibitors. Work is going on to identify the remaining...

  11. Using relative penetration and maleness indices in Meloidogyne ...

    African Journals Online (AJOL)

    Resistance in plant-parasitic nematodes is broadly classified as pre-infectional or post-infectional. Prebreeding establishment of resistance type in plant-parasitic nematodes is essential where germplasm is to be introgressed into the rootstock breeding lines since only post-infectional resistance is introgressible. A study ...

  12. Studies on Meloidogyne javanica infestation on roma tomato ...

    African Journals Online (AJOL)

    USER

    2010-05-31

    May 31, 2010 ... Tomato growing on a garden basis has been practiced in Nigeria for a long period of time mainly for domestic consumption such as soup, stew and vegetables salads. (Poysa, 2000). This crop is now being grown in form of paste, purree, ketchups and as fruit drinks. The fruit is known to contain high level of ...

  13. Ontwikkeling van een biotoets voor het Noordelijk wortelknobbelaaltje (Meloidogyne hapla)

    NARCIS (Netherlands)

    Zondervan, A.A.W.

    1987-01-01

    Beschrijving van onderzoek naar de optimalisatie en standaardisatie van een biotoets voor M. hapla met goudsbloem (Calendula officinalis). Daarnaast worden biologische kenmerken van dit aaltje, de gewijzigde toetsmethodiek (toetsmedium sla) en de m.b.v. de proefresutaten opgestelde indeling in

  14. Induced mutations in cucumber for resistance to nematodes (Meloidogyne spp.)

    International Nuclear Information System (INIS)

    Udalov, V.B.; Prikhod'ko, V.F.

    1989-01-01

    Full text: Seeds were treated with EI and selection was carried out over 5 years. In the susceptible cv. ''M15'' treated with 0.05% EI for 21 h 7.6% of plants were found resistant, 72% only slightly susceptible. Mutants were used in crosses and hybrids showed 57-89% resistance over 6 generations. (author)

  15. Lauric acid in crown daisy root exudate potently regulates root-knot nematode chemotaxis and disrupts Mi-flp-18 expression to block infection.

    Science.gov (United States)

    Dong, Linlin; Li, Xiaolin; Huang, Li; Gao, Ying; Zhong, Lina; Zheng, Yuanyuan; Zuo, Yuanmei

    2014-01-01

    Tomato (Solanum lycopersicum) crops can be severely damaged due to parasitism by the root-knot nematode (RKN) Meloidogyne incognita, but are protected when intercropped with crown daisy (Chrysanthemum coronarium L.). Root exudate may be the determining factor for this protection. An experiment using pots linked by a tube and Petri dish experiments were undertaken to confirm that tomato-crown daisy intercropping root exudate decreased the number of nematodes and alleviated nematode damage, and to determine crown daisy root exudate-regulated nematode chemotaxis. Following a gas chromatography-mass spectrometry assay, it was found that the intercropping protection was derived from the potent bioactivity of a specific root exudate component of crown daisy, namely lauric acid. The Mi-flp-18 gene, encoding an FMRFamide-like peptide neuromodulator, regulated nematode chemotaxis and infection by RNA interference. Moreover, it was shown that lauric acid acts as both a lethal trap and a repellent for M. incognita by specifically regulating Mi-flp-18 expression in a concentration-dependent manner. Low concentrations of lauric acid (0.5-2.0mM) attract M. incognita and consequently cause death, while high concentrations (4.0mM) repel M. incognita. This study elucidates how lauric acid in crown daisy root exudate regulates nematode chemotaxis and disrupts Mi-flp-18 expression to alleviate nematode damage, and presents a general methodology for studying signalling systems affected by plant root exudates in the rhizosphere. This could lead to the development of economical and feasible strategies for controlling plant-parasitic nematodes, and provide an alternative to the use of pesticides in farming systems.

  16. Nematicidal potential and specific enzyme activity enhancement potential of neem (Azadirachta indica A. Juss.) aerial parts.

    Science.gov (United States)

    Nile, Arti Shivraj; Nile, Shivraj Hariram; Keum, Young Soo; Kim, Doo Hwan; Venkidasamy, Baskar; Ramalingam, Sathishkumar

    2018-02-01

    Nematodes are considered as major plant parasites damaging most of the crops, and neem plant exhibits potential nematicidal and insecticidal properties. This study aimed to check nemato-toxic potential of neem (Azadirachta indica) plant using in vitro and in-planta trials against Meloidogyne incognita. The findings suggested that the neem extracts were lethal to second-stage juvenile (J 2 ) and egg hatching with simultaneous enhancement in treated tomato plant growth. The egg numbers of M. incognita found less sensitive to the aqueous and alcoholic extracts than those of J 2 as per LC 50 values. Complete mortality of J 2 s was recorded at 40, 60, and 80% of neem standard extract (SE) dilutions and for undiluted SE of neem. The undiluted SE extract showed 100% inhibition of egg production. The highest reductions in the number of galls/root system, J 2 population, and egg production were observed with 80, 85, and 82% SE as compared control (untreated distilled water). The maximum 250% growth increment was observed in the length of tomato roots supplemented with neem extracts. Resistance-related enzyme [phenylalanine ammonia lyase (PAL), polyphenol oxidase (PPO), and peroxidase (POX)] activities in tomato plant have been increased significantly by supplementation with neem extracts. It appears that the aerial parts of neem (A. indica) extracts showed significant and sustainable eco-friendly nemato-toxic potential towards M. incognita growth inhibition and eradication using alcoholic extracts compared to aqueous. From this study, it was concluded that the neem aerial parts were useful for the control of M. incognita and could be a possible replacement for synthetic nematicides in crop protection with utilization in enhancement of specific enzyme activity in tomato plants.

  17. Differential response to root-knot nematodes in prunus species and correlative genetic implications.

    Science.gov (United States)

    Esmenjaud, D; Minot, J C; Voisin, R; Pinochet, J; Simard, M H; Salesses, G

    1997-09-01

    Responses of 17 Prunus rootstocks or accessions (11 from the subgenus Amygdalus and 6 from the subgenus Prunophora) were evaluated against 11 isolates of Meloidogyne spp. including one M. arenaria, four M. incognita, four M. javanica, one M. hispanica, and an unclassified population from Florida. Characterization of plant response to root-knot nematodes was based on a gall index rating. Numbers of females and juveniles plus eggs in the roots were determined for 10 of the rootstocks evaluated against one M. arenaria, one M. incognita, one M. javanica, and the Florida isolate. These 10 rootstocks plus Nemaguard and Nemared were retested by growing three different rootstock genotypes together in containers of soil infested individually with each of the above four isolates. Garfi and Garrigues almonds, GF.305 and Rutgers Red Leaf peaches, and the peach-almond GF.677 were susceptible to all isolates. Differences in resistance were detected among the other rootstocks of the subgenus Amygdalus. The peach-almond GF.557 and Summergrand peach were resistant to M. arenaria and M. incognita but susceptible to M. javanica and the Florida isolate. Nemaguard, Nemared, and its two hybrids G x N no. 15 and G x N no. 22 were resistant to all but the Florida isolate. In the subgenus Prunophora, Myrobalan plums P.1079, P.2175, P.2980, and P.2984; Marianna plum 29C; and P. insititia plum AD.101 were resistant to all isolates. Thus, two different genetic systems of RKN resistance were found in the subgenus Amygdalus: one system acting against M. arenaria and M. incognita, and another system also acting against M. javanica. Prunophora rootstocks bear a complete genetic system for resistance also acting against the Florida isolate. The hypotheses on the relationships between these systems and the corresponding putative genes of resistance are presented.

  18. Nematodos agalladores asociados al cultivo de papaya (Carica papaya L. en el departamento de Córdoba, Colombia

    Directory of Open Access Journals (Sweden)

    Jaraba Juan de Dios

    2007-06-01

    Full Text Available

    El objetivo de este trabajo fue identificar los nematodos agalladores asociados al cultivo de papaya (Carica papaya L. en los municipios de Tierralta, Valencia, Lorica, Montería y Montelíbano que constituyen el área productora de papaya en Córdoba. Se evaluaron variables morfológicas y morfométricas en hembras, machos y juveniles de segundo estadío (J2. En las muestras de suelo se determinó pH, contenido de materia orgánica (MO, conductividad eléctrica (CE y textura, a fin de correlacionarlas con la presencia de especies nematodas. Se encontraron Meloidogyne javanica,M. incognita y M. arenaria, siendo M. incognita la especie más frecuente. Las tres especies se encontraron mezcladas en 37,5% de los individuos;M. incognita y M. arenaria en 50%, mientras que M. incognita y M. javanica no se encontraron mezcladas. Las especies se encontraron en pH de 4,9 a 6,4; CE de 0,1 a 0,45 dS· m-1; MO de 1,2 % a 2,5 % y la textura fue arenosa, franca y franco arenosa. El pH, el contenido de arena y la CE correlacionan de manera positiva con la presencia de los nematodos, mientras la MO mostró correlación negativa. Se reporta por primera vez la ocurrencia de M. javanica, M. incognita, M. arenaria, así como la mezcla de M. incognita y M. arenaria, en papayas de Colombia.

  19. Nematofauna associada à cultura do quiabo na região leste de Minas Gerais The influence of parasitic nematodes on okra crop in eastern Minas Gerais State, Brazil

    Directory of Open Access Journals (Sweden)

    Rosângela D'Arc de Lima Oliveira

    2007-03-01

    Full Text Available A cultura do quiabo possui importância sócio-cultural para o estado de Minas Gerais (MG e 34,2% do volume de quiabo comercializado na Ceasa/Contagem procede dos municípios localizados entre Caratinga e Governador Valadares. Entretanto, o quiabeiro tem a sua produção influenciada pelos danos decorrentes de infecções causadas pelos nematóides das galhas (Meloidogyne spp.. As principais espécies desse nematóide que atacam o quiabeiro já foram relatadas no Brasil, e algumas destas podem causar a morte da planta. A correta identificação da(s espécie(s e, ou da(s raça(s de Meloidogyne presente(s nas raízes do quiabeiro é importante na escolha da medida de controle mais apropriada. Para determinar a ocorrência e distribuição de Meloidogyne spp. e outros nematóides na região leste de MG, 70 amostras de solo e raízes da cultura, provenientes de 14 localidades, foram avaliadas por características morfológicas e isoenzimáticas. Dentre as populações de Meloidogyne spp. identificadas prevaleceu M. incognita (fenótipos de Esterase I1 e I2, seguida de M. javanica (fenótipos J2 e J3 e M. arenaria (fenótipo A2. A espécie M. mayaguensis foi confirmada pela ocorrência do fenótipo M2 para esterase, N3 para malato desidrogenase, N2 para superóxido dismutase e N3 para glutamato-oxaloacetato transaminase. Este é o primeiro relato da ocorrência de M. mayaguensis em MG. Outros nematóides detectados na rizosfera do quiabeiro foram Aphelenchus sp., Criconemella sp., Helicotylenchus spp., Pratylenchus brachyurus e P. coffeae, Rotylenchulus reniformis, Rotylenchus sp., Tylenchus sp. e Tylenchorhynchus sp.Okra has a cultural and social importance for the State of Minas Gerais (MG, and 34,2% of the volume marketed in the Ceasa/Contagem, MG, come from the municipalities located near Caratinga and Governador Valadares. The okra production is influenced for the infection caused by the root-knot nematodes (Meloidogyne spp.. The main species

  20. Complete genome sequence of Bacillus thuringiensis YC-10, a novel active strain against plant-parasitic nematodes.

    Science.gov (United States)

    Cheng, Feixue; Wang, Jian; Song, Zhiqiang; Cheng, Ju'e; Zhang, Deyong; Liu, Yong

    2015-09-20

    Bacillus thuringiensis is an important microbial biopesticide for controlling agricultural pests by the production of toxic parasporal crystals proteins.Here,we report the finished annotated genome sequence of B. thuringiensis YC-10,which is highly toxic to nematodes.The complete genome sequence consists of a circular chromosome and nine circular plasmids,which the biggest plasmid harbors six parasporal crystals proteins genes consisting of cry1Aa, cry1Ac, cry1Ia, cry2Aa, cry2Ab and cryB1. The crystals proteins of Cry1Ia and Cry1Aa have high nematicidal activity against Meloidogyne incognita. Copyright © 2015 Elsevier B.V. All rights reserved.

  1. Characterization of Thermo- and Detergent Stable Antigenic Glycosylated Cysteine Protease of Euphorbia nivulia Buch.-Ham. and Evaluation of Its Ecofriendly Applications

    Directory of Open Access Journals (Sweden)

    Shamkant B. Badgujar

    2013-01-01

    Full Text Available An antigenic glycosylated cysteine protease has been purified from the latex of Euphorbia nivulia Buch.-Ham. It exhibits remarkable protease activity in the presence of metal ions, oxidizing agents, organic solvents, and detergents. This enzyme showed potential role in leather processing industry due to its dehairing activity for animal hide without hydrolyzing fibrous proteins, producing, by this way, a better quality product. The enzyme can also be used for silver recovering from X-ray plates. In addition, the stability (temperature and surfactants and hydrolysis of blood stain data also revealed its application in detergent industries. Agriculturally, this protease finds application in biocontrol process against the infectious management of root knot nematode, Meloidogyne incognita. Biologically, it shows noticeable wound healing, haemostatic and antibacterial activity.

  2. Role of mungbean root nodule associated fluorescent Pseudomonas and rhizobia in suppressing the root rotting fungi and root knot nematodes in chickpea (Cicer arietinum L.)

    International Nuclear Information System (INIS)

    Noreen, R.; Shafique, A.; Haque, S.E.; Ali, S.A.

    2016-01-01

    Three isolates each of fluorescent Pseudomonas (NAFP-19, NAFP-31 and NAFP-32) and rhizobia (NFB- 103, NFB-107 and NFB-109) which were originally isolated from root nodules of mungbean (Vigna radiata) showed significant biocontrol activity in the screen house and under field condition, against root rotting fungi viz., Macrophomina phaseolina, Fusarium solani, F. oxysporum and Rhizoctonia solani evaluated on chickpea. Biocontrol potential of these isolates was also evaluated against Meloidogyne incognita, the root knot nematode. Application of Pseudomonas and rhizobial isolates as a soil drench, separately or mixed significantly reduced root rot disease under screen house and field conditions. Nematode penetration in roots was also found significantly less in rhizobia or Pseudomonas treatments used separately or mixed as compared to control. Fluorescent Pseudomonas treated plants produced greater number of nodules per plant than control plants and about equal to rhizobia treated plants, indicating that root nodule associated fluorescent Pseudomonas enhance root nodulation. (author)

  3. Velocidad y Tiempo de Centrifugación para Extraer Nematodos Fitoparásitos del Suelo.

    Directory of Open Access Journals (Sweden)

    Volcy Charles

    1980-09-01

    Full Text Available An experiment was carried out in order to compare different combination of speeds and times of centrifugation to isolate Helicotylenchus dihystera, Meloidogyne incognita and Tylenchulus semipenetrans. The centrifugation-sugar screening method was used. Two loam soils were use with natural infestations of the above mentioned nematodes and a silty loam with natural infestation of H. dihystera. It was concluded that the combination with more consistent results to isolate the spiral eelworm was the centrifugation at 1000 rpm (200 g for 5 minutes in both cycles, while the combinations with best result to extract the other two species was the centrifugation at 2000 rpm (800 g for 3 minutes in both cycles.

  4. Microbiomes associated with infective stages of root-knot and lesion nematodes in soil.

    Directory of Open Access Journals (Sweden)

    Ahmed Elhady

    Full Text Available Endoparasitic root-knot (Meloidogyne spp. and lesion (Pratylenchus spp. nematodes cause considerable damage in agriculture. Before they invade roots to complete their life cycle, soil microbes can attach to their cuticle or surface coat and antagonize the nematode directly or by induction of host plant defenses. We investigated whether the nematode-associated microbiome in soil differs between infective stages of Meloidogyne incognita and Pratylenchus penetrans, and whether it is affected by variation in the composition of microbial communities among soils. Nematodes were incubated in suspensions of five organically and two integrated horticultural production soils, recovered by sieving and analyzed for attached bacteria and fungi after washing off loosely adhering microbes. Significant effects of the soil type and nematode species on nematode-associated fungi and bacteria were revealed as analyzed by community profiling using denaturing gradient gel electrophoresis. Attached microbes represented a small specific subset of the soil microbiome. Two organic soils had very similar bacterial and fungal community profiles, but one of them was strongly suppressive towards root-knot nematodes. They were selected for deep amplicon sequencing of bacterial 16S rRNA genes and fungal ITS. Significant differences among the microbiomes associated with the two species in both soils suggested specific surface epitopes. Among the 28 detected bacterial classes, Betaproteobacteria, Bacilli and Actinobacteria were the most abundant. The most frequently detected fungal genera were Malassezia, Aspergillus and Cladosporium. Attached microbiomes did not statistically differ between these two soils. However, Malassezia globosa and four fungal species of the family Plectosphaerellaceae, and the bacterium Neorhizobium galegae were strongly enriched on M. incognita in the suppressive soil. In conclusion, the highly specific attachment of microbes to infective stages of

  5. Nematicidal and larvicidal activities of the essential oils from aerial parts of Pectis oligocephala and Pectis apodocephala Baker

    Directory of Open Access Journals (Sweden)

    Maria Rose Jane R. Albuquerque

    2007-06-01

    Full Text Available The chemical composition of the essential oils from aerial parts of Pectis apodocephala and Pectis oligocephala were analyzed by GC-MS. The essential oils of these species were predominantly constituted by monoterpenes. Geranial (42.9-44.5%, neral (32.2-34.2% and alpha-pinene (10.7-11.4% were the main constituents in the oil of P. apodocephala, while p-cymene (50.3-70.9% and thymol (24.4-44.7%, were the prevalent compounds in the oil of P. oligocephala. The essential oils were tested against the root knot nematode Meloidogyne incognita and Aedes aegypti larvae survival. The results obtained show that both essential oils exhibited significant activity and could be considered as potent natural namaticidal and larvicidal agents.A composição química dos óleos essenciais das partes aéreas de Pectis apodocephala e Pectis oligocephala foi analisada por CG-EM. Os óleos essenciais destas espécies foram predominantemente constituídos por monoterpenos. Geranial (42, 9-44, 5%, neral (32, 2-34, 2% e alfa-pineno (10, 7-11, 4% foram os constituintes majoritários no óleo de P. apodocephala, enquanto p-cimeno (50, 3-70, 9% e timol (24, 4-44, 7%, foram os compostos prevalentes no óleo de P. oligocephala. Ambos os óleos foram testados contra o nematóide Meloidogyne incognita e larvas do mosquito Aedes aegypti no terceiro estágio. Os resultados obtidos mostraram que os óleos exibem significante atividade e podem, portanto, ser considerados como potenciais agentes nematicida e larvicida naturais.

  6. REAÇÃO DE FIGUEIRAS A TRÊS ESPÉCIES DE NEMATOIDES-DAS-GALHAS

    Directory of Open Access Journals (Sweden)

    MARYLIA GABRIELLA SILVA COSTA

    2015-09-01

    Full Text Available RESUMO Os nematoides-das-galhas são considerados os patógenos que habitam o solo de maior importância na cultura da figueira no mundo. O objetivo do presente estudo foi avaliar a reação de genótipos de figueira a Meloidogyne javanica, M. incognita e M. enterolobii, com a possibilidade de serem utilizados como porta-enxerto resistente a esse patógeno. Os genótipos foram inoculados com 5.000 ovos e eventuais juvenis de segundo estádio das espécies dos nematoides em teste. As avaliações foram feitas aos 120 dias após a inoculação. As variáveis avaliadas foram: os índices de galhas, de massas de ovos e o fator de reprodução do nematoide. Todos os genótipos estudados comportaram-se como suscetíveis a M. javanica, M. incognita e M. enterolobii.

  7. Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316

    Science.gov (United States)

    Guo, Jing; Jing, Xueping; Peng, Wen-Lei; Nie, Qiyu; Zhai, Yile; Shao, Zongze; Zheng, Longyu; Cai, Minmin; Li, Guangyu; Zuo, Huaiyu; Zhang, Zhitao; Wang, Rui-Ru; Huang, Dian; Cheng, Wanli; Yu, Ziniu; Chen, Ling-Ling; Zhang, Jibin

    2016-01-01

    We isolated Pseudomonas putida (P. putida) strain 1A00316 from Antarctica. This bacterium has a high efficiency against Meloidogyne incognita (M. incognita) in vitro and under greenhouse conditions. The complete genome of P. putida 1A00316 was sequenced using PacBio single molecule real-time (SMRT) technology. A comparative genomic analysis of 16 Pseudomonas strains revealed that although P. putida 1A00316 belonged to P. putida, it was phenotypically more similar to nematicidal Pseudomonas fluorescens (P. fluorescens) strains. We characterized the diversity and specificity of nematicidal factors in P. putida 1A00316 with comparative genomics and functional analysis, and found that P. putida 1A00316 has diverse nematicidal factors including protein alkaline metalloproteinase AprA and two secondary metabolites, hydrogen cyanide and cyclo-(l-isoleucyl-l-proline). We show for the first time that cyclo-(l-isoleucyl-l-proline) exhibit nematicidal activity in P. putida. Interestingly, our study had not detected common nematicidal factors such as 2,4-diacetylphloroglucinol (2,4-DAPG) and pyrrolnitrin in P. putida 1A00316. The results of the present study reveal the diversity and specificity of nematicidal factors in P. putida strain 1A00316. PMID:27384076

  8. Prunus Rootstock Evaluation to Root-knot and Lesion Nematodes in Spain.

    Science.gov (United States)

    Pinochet, J; Aglès, M; Dalmau, E; Fernández, C; Felipe, A

    1996-12-01

    Two screening and one resistance verification trial involving 20 Prunus rootstocks were conducted under greenhouse conditions against Meloidogyne spp. and Pratylenchus vulnus. Most of the rootstocks were experimental genotypes or new commercial peach and plums of Spanish and French origin. Nearly all are interspecific hybrid rootstocks. In the first trial, the rootstocks Bruce, Cadaman, Mirac, G x N No. 15, Cachirulo x (G x N No. 9), and P. myra x peach were immune or resistant to a mixture of seven isolates of M. incognita. In the second screening trial, the hybrid plum P 2588 was a poor host to a mixture of four isolates of P. vulnus. The remaining seven rootstocks were good hosts to the root-lesion nematode. In the resistance verification trial GF-31, G x N No. 15, Torinel, AD- l 01, Monpol, Nemaguard, and Cadaman maintained a high level of resistance when tested against a mixture of 17 isolates comprising M. incognita, M. javanica, M. arenaria, M. hapla, and M. hispanica. Barrier peach suffered a partial loss of resistance not detected in previous tests.

  9. Nematicidal natural products from the aerial parts of Buddleja crispa.

    Science.gov (United States)

    Sultana, Nighat; Akhter, Musarrat; Khan, Rashid Ali; Afza, Nighat; Tareen, Rasool Bakh; Malik, Abdul

    2010-05-01

    Studies on the aerial parts of Buddleja crispa yielded 13 known compounds, nonyl benzoate, hexyl p-hydroxy-cinnamate, ginipin, gardiol, 1-heptacosanol, steroidal galactoside (22 R)-stigmasta-7,9 (11)-dien-22 beta-ol-3beta-O-beta-D-galactopyranoside, 3-methoxy benzoic acid, beta-sitosterol and ursolic acid. Besides this two iridoid galactosides buddlejosides A, buddlejosides B and a benzofuran-type sesquiterpene buddlejone have been isolated from the ETOAC fraction of B. crispa. Together with the above compounds, methyl benzoate (1) and 3-methoxy-4-hydroxy benzoic acid (2) were also isolated. Compound 2 (C(8)H(8)O(4)) was identified by comparison of its data with those reported earlier, which was originally isolated from Onosma hispidum, and this is the first report of its isolation from this species. For compounds 1 and 2, the total alcoholic soluble extract, methanol soluble, chloroform soluble, ethyl acetate soluble and petroleum ether soluble extract of the aerial parts of B. crispa were screened for nematicidal activity against nematodes of freshly hatched second-stage juveniles of Meloidogyne incognita (root-knot nematode), exhibiting 92%, 40%, 88%, 83%, 82% and 50% mortality, respectively, of eloids M. incognita at 0.5% concentration. Compound 1 was more potent than the nematicide Azadirachta indica at the same concentration. Negative results were obtained for the nematicidal activity of petroleum ether extract of B. crispa leaves.

  10. A harpin elicitor induces the expression of a coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) defense signaling gene and others functioning during defense to parasitic nematodes.

    Science.gov (United States)

    Aljaafri, Weasam A R; McNeece, Brant T; Lawaju, Bisho R; Sharma, Keshav; Niruala, Prakash M; Pant, Shankar R; Long, David H; Lawrence, Kathy S; Lawrence, Gary W; Klink, Vincent P

    2017-12-01

    The bacterial effector harpin induces the transcription of the Arabidopsis thaliana NON-RACE SPECIFIC DISEASE RESISTANCE 1/HARPIN INDUCED1 (NDR1/HIN1) coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) defense signaling gene. In Glycine max, Gm-NDR1-1 transcripts have been detected within root cells undergoing a natural resistant reaction to parasitism by the syncytium-forming nematode Heterodera glycines, functioning in the defense response. Expressing Gm-NDR1-1 in Gossypium hirsutum leads to resistance to Meloidogyne incognita parasitism. In experiments presented here, the heterologous expression of Gm-NDR1-1 in G. hirsutum impairs Rotylenchulus reniformis parasitism. These results are consistent with the hypothesis that Gm-NDR1-1 expression functions broadly in generating a defense response. To examine a possible relationship with harpin, G. max plants topically treated with harpin result in induction of the transcription of Gm-NDR1-1. The result indicates the topical treatment of plants with harpin, itself, may lead to impaired nematode parasitism. Topical harpin treatments are shown to impair G. max parasitism by H. glycines, M. incognita and R. reniformis and G. hirsutum parasitism by M. incognita and R. reniformis. How harpin could function in defense has been examined in experiments showing it also induces transcription of G. max homologs of the proven defense genes ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1), TGA2, galactinol synthase, reticuline oxidase, xyloglucan endotransglycosylase/hydrolase, alpha soluble N-ethylmaleimide-sensitive fusion protein (α-SNAP) and serine hydroxymethyltransferase (SHMT). In contrast, other defense genes are not directly transcriptionally activated by harpin. The results indicate harpin induces pathogen associated molecular pattern (PAMP) triggered immunity (PTI) and effector-triggered immunity (ETI) defense processes in the root, activating defense to parasitic nematodes. Copyright © 2017. Published by Elsevier

  11. de papa en Costa Rica

    Directory of Open Access Journals (Sweden)

    Zeidy Montero

    2007-01-01

    Full Text Available Especies del género Meloidogyne causan importantes daños al cultivo de la papa (Solanum tuberosum L alrededor del mundo. Su efecto puede ser directo al disminuir el rendimiento o indirecto al infectar los tubérculos y causar agallas o protuberancias, que les confiere una apariencia verrugosa, que afecta su calidad y reduce su valor comercial. En Capellades y Llano Grande de Cartago, Costa Rica, fueron encontrados tubérculos de papa, de la variedad Floresta y del clon Bananito, con numerosas protuberancias en su superficie. De las protuberancias se extrajo hembras ovígeras de Meloidogyne spp. Estudios morfológicos (diseño perineal de las hembras y moleculares (PCR y PCRRFLP mostraron que las hembras extraídas de las protuberancias pertenecen a la especie M. incognita. Se recomienda estudiar las causas que promueven la infección de los tubérculos en ambas localidades, ya que cerca del 90% del área cultivada de papa en el país corresponde a la variedad Floresta. En adición, se debe prestar especial atención a las zonas semilleristas, ya que los tubérculos-semilla podrían servir como fuente de inóculo y contribuir a la diseminación del patógeno a otras áreas.

  12. Chemotaxis can take plant-parasitic nematodes to the source of a chemo-attractant via the shortest possible routes.

    Science.gov (United States)

    Reynolds, Andy M; Dutta, Tushar K; Curtis, Rosane H C; Powers, Stephen J; Gaur, Hari S; Kerry, Brian R

    2011-04-06

    It has long been recognized that chemotaxis is the primary means by which nematodes locate host plants. Nonetheless, chemotaxis has received scant attention. We show that chemotaxis is predicted to take nematodes to a source of a chemo-attractant via the shortest possible routes through the labyrinth of air-filled or water-filled channels within a soil through which the attractant diffuses. There are just two provisos: (i) all of the channels through which the attractant diffuses are accessible to the nematodes and (ii) nematodes can resolve all chemical gradients no matter how small. Previously, this remarkable consequence of chemotaxis had gone unnoticed. The predictions are supported by experimental studies of the movement patterns of the root-knot nematodes Meloidogyne incognita and Meloidogyne graminicola in modified Y-chamber olfactometers filled with Pluronic gel. By providing two routes to a source of the attractant, one long and one short, our experiments, the first to demonstrate the routes taken by nematodes to plant roots, serve to test our predictions. Our data show that nematodes take the most direct route to their preferred hosts (as predicted) but often take the longest route towards poor hosts. We hypothesize that a complex of repellent and attractant chemicals influences the interaction between nematodes and their hosts.

  13. Msp40 effector of root-knot nematode manipulates plant immunity to facilitate parasitism.

    Science.gov (United States)

    Niu, Junhai; Liu, Pei; Liu, Qian; Chen, Changlong; Guo, Quanxin; Yin, Junmei; Yang, Guangsui; Jian, Heng

    2016-01-22

    Root-knot nematodes (RKNs) are obligate biotrophic parasites that invade plant roots and engage in prolonged and intimate relationships with their hosts. Nematode secretions, some of which have immunosuppressing activity, play essential roles in successful parasitism; however, their mechanisms of action remain largely unknown. Here, we show that the RKN-specific gene MiMsp40, cloned from Meloidogyne incognita, is expressed exclusively in subventral oesophageal gland cells and is strongly upregulated during early parasitic stages. Arabidopsis plants overexpressing MiMsp40 were more susceptible to nematode infection than were wild type plants. Conversely, the host-derived MiMsp40 RNAi suppressed nematode parasitism and/or reproduction. Moreover, overexpression of MiMsp40 in plants suppressed the deposition of callose and the expression of marker genes for bacterial elicitor elf18-triggered immunity. Transient expression of MiMsp40 prevented Bax-triggered defence-related programmed cell death. Co-agroinfiltration assays indicated that MiMsp40 also suppressed macroscopic cell death triggered by MAPK cascades or by the ETI cognate elicitors R3a/Avr3a. Together, these results demonstrate that MiMsp40 is a novel Meloidogyne-specific effector that is injected into plant cells by early parasitic stages of the nematode and that plays a role in suppressing PTI and/or ETI signals to facilitate RKN parasitism.

  14. Coastal zone - Terra (and aqua) incognita - Integrated Coastal Zone Management in the Black Sea

    Science.gov (United States)

    Kosyan, R. D.; Velikova, V. N.

    2016-02-01

    In the Black Sea coastal states (Bulgaria, Georgia, Romania, Russian Federation, Turkey, and Ukraine), Integrated Coastal Zone Management (ICZM) has no properly established legal and institutional framework. The term "coastal zone" is undefined in national (reportedly with the exception of Bulgaria) and regional legislative documents. The interface between science and policy within ICZM remains poorly developed. Policies for streamlining efforts have been ill-managed and decisions taken in functional zoning and the balanced use and protection of coastal zones have often been shown to be incorrect. The observed proliferation of consultative committees and councils has not been much helpful, public participation has been widely neglected. Illegal practices are in place, and coastal developments continue being largely unsustainable. These problems are often explained by the low awareness of ICZM benefits, and hence, a shortage of political good will, but also by the lack of appropriate Black Sea scientific research, which would ensure a fundamental knowledge-base. There are hundreds of organizations involved in collection of data and information of relevance for ICZM, although there is a distinct lack of coordination. Consequently, there is a substantial overlap of activities, whilst important scientific and policy questions remain unanswered. We review the status of ICZM or mismanagement (ICZmisM) in the Black Sea region, building links between environmental problems and policy measures in response, and providing appropriate examples. Recommendations are put forward with regard to major gaps in ICZM at levels of its theoretical development and practical implementation within the region. The review is intended to remind of major disastrous consequences of present complacency and laissez-faire in the management of the Black Sea. This paper calls for urgent implementation of ICZM in the Black Sea at national and regional levels.

  15. Interaction of rivaroxaban with amiodarone, verapamil and diltiazem in patients with atrial fibrillation: terra incognita

    Directory of Open Access Journals (Sweden)

    S. N. Bel'diev

    2016-01-01

    Full Text Available Currently there are no generally accepted guidelines for the use of rivaroxaban together with amiodarone, verapamil or diltiazem in patients with creatinine clearance (CrCl<80 ml/min. Some researchers suggest that in renal failure amiodarone, verapamil and diltiazem contribute to a significant increase in plasma concentrations of rivaroxaban that is accompanied by increased risk of bleeding. According to preliminary calculations, it seems rational to reduce the dose of rivaroxaban when co-administered with these drugs: to 15 mg/day in patients with ClCr 50-79 ml/min and to 10 mg/day in patients with ClCr<50 ml/min.

  16. Perplexing Metabolomes in Fungal-Insect Trophic Interactions: A Terra Incognita of Mycobiocontrol Mechanisms

    Science.gov (United States)

    Singh, Digar; Son, Su Y.; Lee, Choong H.

    2016-01-01

    The trophic interactions of entomopathogenic fungi in different ecological niches viz., soil, plants, or insect themselves are effectively regulated by their maneuvered metabolomes and the plethora of metabotypes. In this article, we discuss a holistic framework of co-evolutionary metabolomes and metabotypes to model the interactions of biocontrol fungi especially with mycosed insects. Conventionally, the studies involving fungal biocontrol mechanisms are reported in the context of much aggrandized fungal entomotoxins while the adaptive response mechanisms of host insects are relatively overlooked. The present review asserts that the selective pressure exerted among the competing or interacting species drives alterations in their overall metabolomes which ultimately implicates in corresponding metabotypes. Quintessentially, metabolomics offers a most generic and tractable model to assess the fungal-insect antagonism in terms of interaction biomarkers, biosynthetic pathway plasticity, and their co-evolutionary defense. The fungi chiefly rely on a battery of entomotoxins viz., secondary metabolites falling in the categories of NRP’s (non-ribosomal peptides), PK’s (polyketides), lysine derive alkaloids, and terpenoids. On the contrary, insects overcome mycosis through employing different layers of immunity manifested as altered metabotypes (phenoloxidase activity) and overall metabolomes viz., carbohydrates, lipids, fatty acids, amino acids, and eicosanoids. Here, we discuss the recent findings within conventional premise of fungal entomotoxicity and the evolution of truculent immune response among host insect. The metabolomic frameworks for fungal–insect interaction can potentially transmogrify our current comprehensions of biocontrol mechanisms to develop the hypervirulent biocontrol strains with least environmental concerns. Moreover, the interaction metabolomics (interactome) in complementation with other -omics cascades could further be applied to address the fundamental bottlenecks of adaptive co-evolution among biological species. PMID:27807434

  17. Efficacy of Various Application Methods of Fluensulfone for Managing Root-knot Nematodes in Vegetables.

    Science.gov (United States)

    Morris, Kelly A; Langston, David B; Davis, Richard F; Noe, James P; Dickson, Don W; Timper, Patricia

    2016-06-01

    Fluensulfone is a new nematicide in the flouroalkenyl chemical group. A field experiment was conducted in 2012 and 2013 to evaluate the efficacy of various application methods of fluensulfone for control of Meloidogyne spp. in cucumber (Cucumis sativus). Treatments of fluensulfone (3.0 kg a.i./ha) were applied either as preplant incorporation (PPI) or via different drip irrigation methods: drip without pulse irrigation (Drip NP), pulse irrigation 1 hr after treatment (Drip +1P), and treatment at the same time as pulse irrigation (Drip =P). The experiment had eight replications per treatment and also included a PPI treatment of oxamyl (22.5 kg a.i./ha) and a nontreated control. Compared to the control, neither the oxamyl nor the fluensulfone PPI treatments reduced root galling by Meloidogyne spp. in cucumber. Among the drip treatments, Drip NP and Drip +1P reduced root galling compared to the control. Cucumber yield was greater in all fluensulfone treatments than in the control. In a growth-chamber experiment, the systemic activity and phytotoxicity of fluensulfone were also evaluated on tomato (Solanum lycopersicum), eggplant (Solanum melongena), cucumber, and squash (Curcurbita pepo). At the seedling stage, foliage of each crop was sprayed with fluensulfone at 3, 6, and 12 g a.i./liter, oxamyl at 4.8 g a.i./liter, or water (nontreated control). Each plant was inoculated with Meloidogyne incognita juveniles 2 d after treatment. There were six replications per treatment and the experiment was conducted twice. Foliar applications of fluensulfone reduced plant vigor and dry weight of eggplant and tomato, but not cucumber or squash; application of oxamyl had no effect on the vigor or weight of any of the crops. Typically, only the highest rate of fluensulfone was phytotoxic to eggplant and tomato. Tomato was the only crop tested in which there was a reduction in the number of nematodes or galls when fluensulfone or oxamyl was applied to the foliage compared to the

  18. Nematóides que parasitam a soja na região de Bauru Nematode parasites of soybean in the Bauru region

    Directory of Open Access Journals (Sweden)

    Luiz Gonzaga E. Lordello

    1956-01-01

    Full Text Available Entre os sérios fatôres que atuam contra a expansão da cultura da soja no Estado de São Paulo, acha-se o representado por nematóides parasitos. Dêstes, os que mais têm atraído a atenção dos cultivadores e fitopatologistas são as espécies formadoras de galhas no sistema radicular (Meloidogyne spp.. O estudo do material atacado coligido em Bauru revelou que, naquela região, três formas se acham envolvidas, a saber : Pratylenchus sp., Meloidogyne incognita (Kofoid & White, 1919 Chitwood, 1949 e M. javanica bauruensis n. subsp. Neste trabalho é estudada a nova subespécie, sendo também apresentadas algumas observações sobre a população de M. incognita.One of the serious detriments to soybean (Glycine max (L. Merr. cultivation in the State of S. Paulo, Brazil, are root-parasitic nematodes. A study of infected material collected at Bauru, where at least two distinct soybean varieties were cultivated, disclosed that three forms were involved: a meadow nematode (Pralylenchus sp. and two root-knot nematodes (Meloidogyne incognita (Kofoid & White, 1919 Chitwood, 1949, and M. javanica bauruensis n. subsp.. Silva, Lordello & Miyasaka (3 published some observations about the resistance of several soybean varieties to the attacks by root-knot nematodes in Campinas. A detailed study of the nematodes involved in those experiments, which were considered as related do M. incognita, has not yet been made. One of the varieties tested, La 41-1219, proved to be resistant, thereby providing promising material for further studies and breeding. Unfortunately, such a variety when planted in Bauru, was severely attacked by a root-knot species, which is identified as M. incognita. Attacks by M. javanica bauruensis was not noted in that variety but was noted in another variety (Abura growing adjacent in the same field. The host preference of those two nematodes was specific and very marked. M. incognita attacked only var. La 41-1219 and M. javanica

  19. The hypoxic cancer secretome induces pre-metastatic bone lesions through lysyl oxidase

    DEFF Research Database (Denmark)

    Cox, Thomas R; Rumney, Robin M H; Schoof, Erwin M

    2015-01-01

    Tumour metastasis is a complex process involving reciprocal interplay between cancer cells and host stroma at both primary and secondary sites, and is strongly influenced by microenvironmental factors such as hypoxia. Tumour-secreted proteins play a crucial role in these interactions and present...... morbidity and mortality. The molecular interactions governing the early events of osteolytic lesion formation are currently unclear. Here we show hypoxia to be specifically associated with bone relapse in patients with oestrogen-receptor negative breast cancer. Global quantitative analysis of the hypoxic...

  20. Proteomic Analysis of the Secretome of Cellulomonas fimi ATCC 484 and Cellulomonas flavigena ATCC 482

    OpenAIRE

    Wakarchuk, Warren W.; Brochu, Denis; Foote, Simon; Robotham, Anna; Saxena, Hirak; Erak, Tamara; Kelly, John

    2016-01-01

    The bacteria in the genus Cellulomonas are known for their ability to degrade plant cell wall biomass. Cellulomonas fimi ATCC 484 and C. flavigena ATCC 482 have been the subject of much research into secreted cellulases and hemicellulases. Recently the genome sequences of both C. fimi ATCC 484 and C. flavigena ATCC 482 were published, and a genome comparison has revealed their full spectrum of possible carbohydrate-active enzymes (CAZymes). Using mass spectrometry, we have compared the protei...

  1. A proteomic analysis of the Pichia pastoris secretome in methanol-induced cultures.

    Science.gov (United States)

    Huang, Chung-Jr; Damasceno, Leonardo M; Anderson, Kyle A; Zhang, Sheng; Old, Lloyd J; Batt, Carl A

    2011-04-01

    The secreted proteome of Pichia pastoris X-33 was investigated in methanol-induced cultures with a goal to enhance the secretion and purification of recombinant proteins. In a fed-batch fermentation at 30 °C, more host proteins were found in greater concentrations compared to cultures grown at 25 °C. Protein samples collected directly from the culture media at 25 °C, as well as separated by two-dimensional (2D) gel, were subjected to ESI-MS/MS analysis. A total of 75 proteins were identified in the media from different conditions including pre- and post-methanol induction and in a strain overexpressing a recombinant schistosomiasis vaccine, Sm14-C62V. The identified proteins include native secreted proteins and some intracellular proteins, most of which have low isoelectric points (pI important characteristics, such as abundance, degradation, and glycosylation of these identified proteins in this proteome. Cell wall-associated proteins involved in cell wall biogenesis, structure, and modification comprised the majority of the secreted proteins which have been identified. Intracellular proteins such as alcohol oxidase and superoxide dismutase were also found in the proteome, suggesting some degree of cell lysis. However, both protocols show that their concentrations are significantly lower than the native secreted proteins. This study identifies proteins secreted or released into the culture media in the methanol-induced fermentation cultures of P. pastoris X-33 and suggests potential biotechnology applications based on the discovery of this proteome.

  2. Secretomes from bone marrow-derived mesenchymal stromal cells enhance periodontal tissue regeneration.

    Science.gov (United States)

    Kawai, Takamasa; Katagiri, Wataru; Osugi, Masashi; Sugimura, Yukiko; Hibi, Hideharu; Ueda, Minoru

    2015-04-01

    Periodontal tissue regeneration with the use of mesenchymal stromal cells (MSCs) has been regarded as a future cell-based therapy. However, low survival rates and the potential tumorigenicity of implanted MSCs could undermine the efficacy of cell-based therapy. The use of conditioned media from MSCs (MSC-CM) may be a feasible approach to overcome these limitations. The aim of this study was to confirm the effect of MSC-CM on periodontal regeneration. MSC-CM were collected during their cultivation. The concentrations of the growth factors in MSC-CM were measured with the use of enzyme-linked immunoassay. Rat MSCs (rMSCs) and human umbilical vein endothelial cells cultured in MSC-CM were assessed on wound-healing and angiogenesis. The expressions of osteogenetic- and angiogenic-related genes of rMSCs cultured in MSC-CM were quantified by means of real-time reverse transcriptase-polymerase chain reaction analysis. In vivo, periodontal defects were prepared in the rat models and the collagen sponges with MSC-CM were implanted. MSC-CM includes insulin-like growth factor-1, vascular endothelial growth factor, transforming growth factor-β1 and hepatocyte growth factor. In vitro, wound-healing and angiogenesis increased significantly in MSC-CM. The levels of expression of osteogenetic- and angiogenic-related genes were significantly upregulated in rMSCs cultured with MSC-CM. In vivo, in the MSC-CM group, 2 weeks after implantation, immunohistochemical analysis showed several CD31-, CD105-or FLK-1-positive cells occurring frequently. At 4 weeks after implantation, regenerated periodontal tissue was observed in MSC-CM groups. The use of MSC-CM may be an alternative therapy for periodontal tissue regeneration because several cytokines included in MSC-CM will contribute to many processes of complicated periodontal tissue regeneration. Copyright © 2015 International Society for Cellular Therapy. Published by Elsevier Inc. All rights reserved.

  3. Metabolomics reveals the heterogeneous secretome of two entomopathogenic fungi to ex vivo cultured insect tissues.

    Directory of Open Access Journals (Sweden)

    Charissa de Bekker

    Full Text Available Fungal entomopathogens rely on cellular heterogeneity during the different stages of insect host infection. Their pathogenicity is exhibited through the secretion of secondary metabolites, which implies that the infection life history of this group of environmentally important fungi can be revealed using metabolomics. Here metabolomic analysis in combination with ex vivo insect tissue culturing shows that two generalist isolates of the genus Metarhizium and Beauveria, commonly used as biological pesticides, employ significantly different arrays of secondary metabolites during infectious and saprophytic growth. It also reveals that both fungi exhibit tissue specific strategies by a distinguishable metabolite secretion on the insect tissues tested in this study. In addition to showing the important heterogeneous nature of these two entomopathogens, this study also resulted in the discovery of several novel destruxins and beauverolides that have not been described before, most likely because previous surveys did not use insect tissues as a culturing system. While Beauveria secreted these cyclic depsipeptides when encountering live insect tissues, Metarhizium employed them primarily on dead tissue. This implies that, while these fungi employ comparable strategies when it comes to entomopathogenesis, there are most certainly significant differences at the molecular level that deserve to be studied.

  4. Secretome Biomarkers for the Identification and Differentiation of Enterohemorrhagic and Enteropathogenic Escherichia coli Strains

    Science.gov (United States)

    2013-09-01

    protein that belongs to the family of fusion proteins, which are responsible for cell transportation. The experimental peptides identified lie in the...coding genes , consists of millions of amino acid sequences of potential tryptic peptides obtained by the in-silico digestion of all proteins...Laboratory, The Scripps Research Institute; La Jolla, CA) against a constructed proteome database of microorganisms . The SEQUEST thresholds for searching

  5. Mapping of the secretome of primary isolates of mammalian cells, stem cells and derived cell lines

    Czech Academy of Sciences Publication Activity Database

    Skalníková, Helena; Motlík, Jan; Gadher, S. J.; Kovářová, Hana

    2011-01-01

    Roč. 11, - (2011), s. 691-708 ISSN 1615-9853 R&D Projects: GA MŠk 1M0538; GA MŠk(CZ) ME10044 Institutional research plan: CEZ:AV0Z50450515 Keywords : cell biology * conditioned media * cytokine Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 4.505, year: 2011

  6. Mesenchymal Stem Cells Secretory Responses: Senescence Messaging Secretome and Immunomodulation Perspective

    Directory of Open Access Journals (Sweden)

    Victoria V. Lunyak

    2017-12-01

    Full Text Available Mesenchymal stem/stromal cells (MSC have been tested in a significant number of clinical trials, where they exhibit regenerative and repair properties directly through their differentiation into the cells of the mesenchymal origin or by modulation of the tissue/organ microenvironment. Despite various clinical effects upon transplantation, the functional properties of these cells in natural settings and their role in tissue regeneration in vivo is not yet fully understood. The omnipresence of MSC throughout vascularized organs equates to a reservoir of potentially therapeutic regenerative depots throughout the body. However, these reservoirs could be subjected to cellular senescence. In this review, we will discuss current progress and challenges in the understanding of different biological pathways leading to senescence. We set out to highlight the seemingly paradoxical property of cellular senescence: its beneficial role in the development and tissue repair and detrimental impact of this process on tissue homeostasis in aging and disease. Taking into account the lessons from the different cell systems, this review elucidates how autocrine and paracrine properties of senescent MSC might impose an additional layer of complexity on the regulation of the immune system in development and disease. New findings that have emerged in the last few years could shed light on sometimes seemingly controversial results obtained from MSC therapeutic applications.

  7. Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression

    Science.gov (United States)

    Amber J. Vanden Wymelenberg; Jill A. Gaskell; Michael D. Mozuch; Philip J. Kersten; Grzegorz Sabat; Diego Martinez; Daniel Cullen

    2009-01-01

    The wood decay basidiomycete Phanerochaete chrysosporium was grown under standard ligninolytic or cellulolytic conditions and subjected to whole-genome expression microarray analysis and liquid chromatography-tandem mass spectrometry of extracellular proteins. A total of 545 genes were flagged on the basis of significant changes in transcript accumulation and/or...

  8. Cathepsin B gene disruption induced Leishmania donovani proteome remodeling implies cathepsin B role in secretome regulation.

    Directory of Open Access Journals (Sweden)

    Teklu Kuru Gerbaba

    Full Text Available Leishmania cysteine proteases are potential vaccine candidates and drug targets. To study the role of cathepsin B cysteine protease, we have generated and characterized cathepsin B null mutant L. donovani parasites. L. donovani cathepsin B null mutants grow normally in culture, but they show significantly attenuated virulence inside macrophages. Quantitative proteome profiling of wild type and null mutant parasites indicates cathepsin B disruption induced remodeling of L. donovani proteome. We identified 83 modulated proteins, of which 65 are decreased and 18 are increased in the null mutant parasites, and 66% (55/83 of the modulated proteins are L. donovani secreted proteins. Proteins involved in oxidation-reduction (trypanothione reductase, peroxidoxins, tryparedoxin, cytochromes and translation (ribosomal proteins are among those decreased in the null mutant parasites, and most of these proteins belong to the same complex network of proteins. Our results imply virulence role of cathepsin B via regulation of Leishmania secreted proteins.

  9. The Human Amnion Epithelial Cell Secretome Decreases Hepatic Fibrosis in Mice with Chronic Liver Fibrosis

    Directory of Open Access Journals (Sweden)

    Majid Alhomrani

    2017-10-01

    Full Text Available Background: Hepatic stellate cells (HSCs are the primary collagen-secreting cells in the liver. While HSCs are the major cell type involved in the pathogenesis of liver fibrosis, hepatic macrophages also play an important role in mediating fibrogenesis and fibrosis resolution. Previously, we observed a reduction in HSC activation, proliferation, and collagen synthesis following exposure to human amnion epithelial cells (hAEC and hAEC-conditioned media (hAEC-CM. This suggested that specific factors secreted by hAEC might be effective in ameliorating liver fibrosis. hAEC-derived extracellular vesicles (hAEC-EVs, which are nanosized (40–100 nm membrane bound vesicles, may act as novel cell–cell communicators. Accordingly, we evaluated the efficacy of hAEC-EV in modulating liver fibrosis in a mouse model of chronic liver fibrosis and in human HSC.Methods: The hAEC-EVs were isolated and characterized. C57BL/6 mice with CCl4-induced liver fibrosis were administered hAEC-EV, hAEC-CM, or hAEC-EV depleted medium (hAEC-EVDM. LX2 cells, a human HSC line, and bone marrow-derived mouse macrophages were exposed to hAEC-EV, hAEC-CM, and hAEC-EVDM. Mass spectrometry was used to examine the proteome profile of each preparation.Results: The extent of liver fibrosis and number of activated HSCs were reduced significantly in CCl4-treated mice given hAEC-EVs, hAEC-CM, and hAEC EVDM compared to untreated controls. Hepatic macrophages were significantly decreased in all treatment groups, where a predominant M2 phenotype was observed. Human HSCs cultured with hAEC-EV and hAEC-CM displayed a significant reduction in collagen synthesis and hAEC-EV, hAEC-CM, and hAEC-EVDM altered macrophage polarization in bone marrow-derived mouse macrophages. Proteome analysis showed that 164 proteins were unique to hAEC-EV in comparison to hAEC-CM and hAEC-EVDM, and 51 proteins were co-identified components with the hAEC-EV fraction.Conclusion: This study provides novel data showing that hAEC-derived EVs significantly reduced liver fibrosis and macrophage infiltration to an extent similar to hAEC-EVDM and hAEC-CM. hAEC-EV-based therapy may be a potential therapeutic option for liver fibrosis.

  10. Secretome of fungus-infected aphids documents high pathogen activity and weak host response

    DEFF Research Database (Denmark)

    Grell, Morten Nedergaard; Jensen, Annette Bruun; Olsen, Peter B.

    2011-01-01

    possible by screening a cDNA library constructed directly on field sampled material with an advanced method, unbiased of known sequences and/or functions. We show for the first time that fungi from the genera Pandora and Entomophthora are armed with a battery of hydrolytic enzymes for penetration...

  11. Quantitative iTRAQ secretome analysis of aspergillus niger reveals novel hydrolytic enzymes

    NARCIS (Netherlands)

    Adav, S.S.; Li, A.A.; Manavalan, A.; Punt, P.; Sze, S.K.

    2010-01-01

    The natural lifestyle of Aspergillus niger made them more effective secretors of hydrolytic proteins and becomes critical when this species were exploited as hosts for the commercial secretion of heterologous proteins. The protein secretion profile of A. niger and its mutant at different pH was

  12. Characterization of Clostridium thermocellum (B8) secretome and purified cellulosomes for lignocellulosic biomass degradation.

    Science.gov (United States)

    Osiro, Karen O; de Camargo, Brenda R; Satomi, Rachel; Hamann, Pedro Ricardo V; Silva, Jéssica Pinheiro; de Sousa, Marcelo Valle; Quirino, Betania F; Aquino, Elaine N; Felix, Carlos R; Murad, André Melro; Noronha, Eliane F

    2017-02-01

    The main goal of the present study was a complete proteomic characterization of total proteins eluted from residual substrate-bound proteins (RSBP), and cellulosomes secreted by Clostridium thermocellum B8 during growth in the presence of microcrystalline cellulose as a carbon source. The second goal was to evaluate their potential use as enzymatic blends for hydrolyzing agro-industrial residues to produce fermentable sugars. Protein identification through LC-MS/MS mass spectrometry showed that the RSBP sample, in addition to cellulosomal proteins, contains a wide variety of proteins, including those without a well-characterized role in plant cell wall degradation. The RSBP subsample defined as purified cellulosomes (PC) consists mainly of glycoside hydrolases grouped in families 5, 8, 9, 10 and 48. Dynamic light scattering, DLS, analysis of PC resulted in two protein peaks (pi1 and pi2) presenting molecular masses in agreement with those previously described for cellulosomes and polycellulosomes. These peaks weren't detected after PC treatment with 1.0% Tween. PC and RSBP presented maximal activities at temperatures ranging from 60° to 70°C and at pH 5.0. RSBP retained almost all of its activity after incubation at 50, 60 and 70°C and PC showed remarkable thermostability at 50 and 60°C. RSBP holocellullolytic activities were inhibited by phenolic compounds, while PC showed either increasing activity or a lesser degree of inhibition. RSBP and PC hydrolyze sugar cane straw, cotton waste and microcrystalline cellulose, liberating a diversity of saccharides; however, the highest concentration of released sugar was obtained for assays carried out using PC as an enzymatic blend and after ten days at 50°C. Copyright © 2016 Elsevier Inc. All rights reserved.

  13. Physicochemical Properties Analysis and Secretome of Aspergillus niger in Fermented Rapeseed Meal.

    Directory of Open Access Journals (Sweden)

    Changyou Shi

    Full Text Available The nutrient digestibility and feeding value of rapeseed meal (RSM for non-ruminant animals is poor due to the presence of anti-nutritional substances such as glucosinolate, phytic acid, crude fiber etc. In the present study, a solid state fermentation (SSF using Aspergillus niger was carried out with the purpose of improving the nutritional quality of RSM. The chemical composition and physicochemical properties of RSM before and after fermentation were compared. To further understand possible mechanism of solid state fermentation, the composition of extracellular enzymes secreted by Aspergillus niger during fermentation was analysed using two-dimentional difference gel electrophoresis (2D-DIGE combined with matrix assisted laser desorption ionization-time of flight-mass spectrometer (MALDI-TOF-MS. Results of the present study indicated that SSF had significant effects on chemical composition of RSM. The fermented rapeseed meal (FRSM contained more crude protein (CP and amino acid (AA (except His than unfermented RSM. Notably, the small peptide in FRSM was 2.26 time larger than that in unfermented RSM. Concentrations of anti-nutritional substrates in FRSM including neutral detergent fiber (NDF, glucosinolates, isothiocyanate, oxazolidithione, and phytic acid declined (P < 0.05 by 13.47, 43.07, 55.64, 44.68 and 86.09%, respectively, compared with unfermented RSM. A. niger fermentation disrupted the surface structure, changed macromolecular organic compounds, and reduced the protein molecular weights of RSM substrate. Total proteins of raw RSM and FRSM were separated and 51 protein spots were selected for mass spectrometry according to 2D-DIGE map. In identified proteins, there were 15 extracellular hydrolases secreted by A. niger including glucoamylase, acid protease, beta-glucanase, arabinofuranosidase, xylanase, and phytase. Some antioxidant related enzymes also were identified. These findings suggested that A. niger is able to secrete many extracellular degradation enzymes (especially lignocellulosic hydrolyzing enzymes, acid proteases and phytase during fermentation of RSM, thus altering chemical composition and physicochemical properties of RSM.

  14. Mining the secretome of root-knot nematodes for cell wall modifying proteins

    NARCIS (Netherlands)

    Roze, E.H.A.

    2008-01-01

    The products of parasitism genes in nematodes must be secreted to reach their targets at the nematode-plant interface. These nematode secretory proteins are therefore recognised to play an important role in the nematode-plant interaction and as a result have been subject of intense study for years.

  15. Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat.

    Directory of Open Access Journals (Sweden)

    Myron eBruce

    2014-01-01

    Full Text Available Wheat leaf rust, caused by the basidiomycete Puccinia triticina, can cause yield losses of up to 20% in wheat producing regions. During infection, the fungus forms haustoria that secrete proteins into the plant cell and effect changes in plant transcription, metabolism and defense. It is hypothesized that new races emerge as a result of overcoming plant resistance via changes in the secreted effector proteins. To understand gene expression during infection and find genetic differences associated with races, RNA from wheat leaves infected with six different rust races, at six days post inoculation, was sequenced using Illumina. As P. triticina is an obligate biotroph, RNA from both the host and fungi were present and separated by alignment to the P. triticina genome and a wheat EST reference. A total of 222,571 rust contigs were assembled from 165 million reads. An examination of the resulting contigs revealed 532 predicted secreted proteins among the transcripts. Of these, 456 were found in all races. Fifteen genes were found with amino acid changes, corresponding to putative avirulence effectors potentially recognized by 11 different leaf rust resistance (Lr genes. Thirteen of the potential avirulence effectors have no homology to known genes. One gene had significant similarity to cerato-platanin, a known fungal elicitor, and another showed similarity to fungal tyrosinase, an enzyme involved in melanin synthesis. Temporal expression profiles were developed for these genes by qRT-PCR and show that the 15 genes share similar expression patterns from infection initiation to just prior to spore eruption.

  16. First analysis of the secretome of the canine heartworm, Dirofilaria immitis

    Directory of Open Access Journals (Sweden)

    Geary James

    2012-07-01

    Full Text Available Abstract Background The characterization of proteins released from filariae is an important step in addressing many of the needs in the diagnosis and treatment of these clinically important parasites, as well as contributing to a clearer understanding of their biology. This report describes findings on the proteins released during in vitro cultivation of adult Dirofilaria immitis , the causative agent of canine and feline heartworm disease. Differences in protein secretion among nematodes in vivo may relate to the ecological niche of each parasite