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Sample records for mediterranei cladocora caespitosa

  1. The influence of light, temperature and feeding on the growth of the Coras cladocora caespitosa and Balanophyllia europaea; L'influenza di luce, temperatura e alimentazione sulla crescita dei coralli mediterranei Cladocora caespitosa e Balanophyllia europaea. Risultati preliminari di una sperimentazione in ambiente controllato

    Energy Technology Data Exchange (ETDEWEB)

    Rodolfo-Metalpa, R.; Abbate, M.; Peirano, A. [ENEA, Divisione Ambiente Globale e Mediterraneo, Centro Ricerche S. Teresa, La Spezia (Italy)

    2001-07-01

    In the course of the environmental studies, carried out by ENEA-CRAM Center of S. Teresa near La Spezia, research has been performed about bioconstructional organisms in the Mediterranean Sea. To understand how these organisms respond to environmental parameters an experiment has been carried out in aquaria. Specimens of the Mediterranean coral Cladocora caespitosa and Balanophyllia europaea has been maintained in 80 independent aquaria for four months. Growth rates, pigments concentration and asexual reproduction of the corals were compared in experimental procedures with controlled conditions of light, temperature and food. Environmental parameters have been set out to simulate natural (winter and summer) ambient in the Ligurian Sea. Heterotrophic and autotrophic abilities of the corals have been compared. Results show different growth rates between the two species but similar heterotrophic growth patterns. Summer temperature largely influences growth rates and asexual reproduction of the species while light influence is small. [Italian] Nell'ambito delle ricerche svolte dall'ENEA sullo studio degli organismi biocostruttori nell'ambiente marino, e' stata svolta una sperimentazione al fine di valutare l'influenza di alcuni parametri ambientali (luce, temperatura e alimentazione), impostati in modo da simulare la naturale stagionalita' (inverno ed estate), sulla crescita e sulla riproduzione asessuale dei coralli mediterranei Cladocora caespitosa e Balanophyllia europaea. Queste sperimentazioni sono state condotte, per un periodo di circa quattro mesi, in ottanta acquari indipendenti caratterizzati da differenti livelli di luce, temperatura e alimentazione. Le valutazioni degli incrementi di peso e della crescita lineare sono state eseguite utilizzando differenti metodiche note in letteratura. Soprattutto la tecnica del Peso Galleggiante (Buoyant Weight) si e' dimostrata molto sensibile ed efficace. La capacita' (eterotrofia

  2. Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea

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    Esther Rubio-Portillo

    2018-01-01

    Full Text Available The endemic Mediterranean zooxanthellate scleractinian reef-builder Cladocora caespitosa is among the organisms most affected by warming-related mass mortality events in the Mediterranean Sea. Corals are known to contain a diverse microbiota that plays a key role in their physiology and health. Here we report the first study that examines the microbiome and pathobiome associated with C. caespitosa in three different Mediterranean locations (i.e., Genova, Columbretes Islands, and Tabarca Island. The microbial communities associated with this species showed biogeographical differences, but shared a common core microbiome that probably plays a key role in the coral holobiont. The putatively pathogenic microbial assemblage (i.e., pathobiome of C. caespitosa also seemed to depend on geographic location and the human footprint. In locations near the coast and with higher human influence, the pathobiome was entirely constituted by Vibrio species, including the well-known coral pathogens Vibrio coralliilyticus and V. mediterranei. However, in the Columbretes Islands, located off the coast and the most pristine of the analyzed locations, no changes among microbial communities associated to healthy and necrosed samples were detected. Hence, our results provide new insights into the microbiome of the temperate corals and its role in coral health status, highlighting its dependence on the local environmental conditions and the human footprint.

  3. The Mediterranean stony coral Cladocora caespitosa (Linnaeus, 1767) as habitat provider for molluscs: colony size effect

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    Pitacco, Valentina; Crocetta, Fabio; Orlando-Bonaca, Martina; Mavrič, Borut; Lipej, Lovrenc

    2017-11-01

    The stony coral Cladocora caespitosa (Linnaeus, 1767) is an important Mediterranean habitat builder, whose survival is now being threatened by human activities and possibly natural events such as mass mortality and bleaching. We characterized the mollusc assemblage associated with colonies in the Gulf of Trieste (northern Adriatic Sea) and then tested whether the number of mollusc species increases in relation with colony size, following a Species-Area Relationship (SAR) model. At least 62 taxa were found in association with coral colonies, with bivalves constituting the dominant group. More than half of the 3034 specimens encountered were juveniles. Mollusc taxa richness increased with increasing C. caespitosa colony size according to the power-function model, whilst the analyses of trophic and functional groups supports the hypothesis of at least two factors underlying SAR (area per se and habitat diversity). Our results confirmed the importance of C. caespitosa for benthic communities, indicating that larger colonies support higher biodiversity, and suggesting that C. caespitosa is the most important habit builder among Mediterranean cnidarians, having also an influential function as a natural nursery ground. These results underline the necessity of new investigations aimed at filling gaps in our knowledge and planning new measures to protect the species.

  4. In vivo measurements of the seasonal photosynthetic fluorescence of the Mediterranean coral Cladocora caespitosa (L.

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    Andrea Peirano

    2007-12-01

    Full Text Available In situ photosynthetic fluorescence of the zooxanthellate Mediterranean coral Cladocora caespitosa (L. was measured seasonally on colonies from 5 to 27 m depth using an INF-300 Integrating Natural Fluorometer (Biospherical Instrument Inc.. This oceanographic instrument, used to measure the in vivo phytoplankton chlorophyll a (Chl a fluorescence, was adapted to record the natural fluorescence of C. caespitosa by SCUBA divers. The resulting curves of natural fluorescence of Chl a vs photosynthetically active radiation (PAR 400-700 nm showed that: (1 natural fluorescence was limited by light availability in both deep and shallow colonies in all seasons; (2 photosynthesis occurred in C. caespitosa also in winter, when temperature is low and seawater turbidity contributes significantly to PAR attenuation; and (3 the efficiency of the Chl a fluorescence increased from summer to winter. This last finding outlines the winter coupling between zooxanthellae activity and calcification processes and is consistent with the formation of the high density band in the coral skeleton.

  5. Environmental drivers of distribution and reef development of the Mediterranean coral Cladocora caespitosa

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    Chefaoui, Rosa M.; Casado-Amezúa, Pilar; Templado, José

    2017-12-01

    Cladocora caespitosa is the only Mediterranean scleractinian similar to tropical reef-building corals. While this species is part of the recent fossil history of the Mediterranean Sea, it is currently considered endangered due to its decline during the last decades. Environmental factors affecting the distribution and persistence of extensive bank reefs of this endemic species across its whole geographic range are poorly understood. In this study, we examined the environmental response of C. caespitosa and its main types of assemblages using ecological niche modeling and ordination analysis. We also predicted other suitable areas for the occurrence of the species and assessed the conservation effectiveness of Mediterranean marine protected areas (MPAs) for this coral. We found that phosphate concentration and wave height were factors affecting both the occurrence of this versatile species and the distribution of its extensive bioconstructions in the Mediterranean Sea. A set of factors (diffuse attenuation coefficient, calcite and nitrate concentrations, mean wave height, sea surface temperature, and shape of the coast) likely act as environmental barriers preventing the species from expansion to the Atlantic Ocean and the Black Sea. Uncertainties in our large-scale statistical results and departures from previous physiological and ecological studies are also discussed under an integrative perspective. This study reveals that Mediterranean MPAs encompass eight of the ten banks and 16 of the 21 beds of C. caespitosa. Preservation of water clarity by avoiding phosphate discharges may improve the protection of this emblematic species.

  6. In vivo measurements of the seasonal photosynthetic fluorescence of the Mediterranean coral Cladocora caespitosa (L.)

    OpenAIRE

    Andrea Peirano

    2007-01-01

    La fluorescencia fotosintética in situ, de las zooxantelas del coral mediterraneo Cladocora caespitosa (L), se determinó estacionalmente sobre colonias desde 5 a 26 m de profundidad a través de un fluorimetro integrador INF-300 (Biospheral Instrument Inc.). Este instrumento oceanográfico, utilizado para medir la fluorescencia de la clorofilla a del fitoplancton in vivo, se ha adaptado para determinar la fluorescencia natural de C. caespitosa por los buceadores. Las curvas resultantes de la fl...

  7. Long-term responses of the endemic reef-builder Cladocora caespitosa to Mediterranean warming.

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    Diego K Kersting

    Full Text Available Recurrent climate-induced mass-mortalities have been recorded in the Mediterranean Sea over the past 15 years. Cladocora caespitosa, the sole zooxanthellate scleractinian reef-builder in the Mediterranean, is among the organisms affected by these episodes. Extensive bioconstructions of this endemic coral are very rare at the present time and are threatened by several stressors. In this study, we assessed the long-term response of this temperate coral to warming sea-water in the Columbretes Islands (NW Mediterranean and described, for the first time, the relationship between recurrent mortality events and local sea surface temperature (SST regimes in the Mediterranean Sea. A water temperature series spanning more than 20 years showed a summer warming trend of 0.06°C per year and an increased frequency of positive thermal anomalies. Mortality resulted from tissue necrosis without massive zooxanthellae loss and during the 11-year study, necrosis was recorded during nine summers separated into two mortality periods (2003-2006 and 2008-2012. The highest necrosis rates were registered during the first mortality period, after the exceptionally hot summer of 2003. Although necrosis and temperature were significantly associated, the variability in necrosis rates during summers with similar thermal anomalies pointed to other acting factors. In this sense, our results showed that these differences were more closely related to the interannual temperature context and delayed thermal stress after extreme summers, rather than to acclimatisation and adaption processes.

  8. Estudio genético de la estructura poblacional y conectividad de dos corales endémicos del Mediterráneo: Astroides calycularis (Pallas, 1766) y Cladocora caespitosa (Linnaeus, 1767)

    OpenAIRE

    Casado-Amezúa, P.

    2012-01-01

    [ES] El objetivo general de la presente tesis es determinar la estructura genética y el alcance de la conectividad de las poblaciones de dos corales escleractinios del Mediterráneo, Astroides calycularis (Pallas, 1766) y Cladocora caespitosa (Linnaeus, 1767). Estos procesos están generalmente ligados a diferentes características biológicas de las especies, tales como la densidad y distribución de las poblaciones, la fecundidad, el éxito reproductor, el tipo de desarrollo larvario, la capacida...

  9. New rifamycins produced by a recombinant strain of Nocardia mediterranei.

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    Schupp, T; Traxler, P; Auden, J A

    1981-08-01

    A recombinant strain of Nocardia mediterranei was found to produce a number of new rifamycins which are structurally related to rifamycin S, rifamycin W and rifamycin G. This strain was derived from two Nocardia mediterranei mutants by intraspecific recombination.

  10. Tufted hairgrass (Deschampsia caespitosa) exhibits a lower photosynthetic plasticity than Antarctic hairgrass (D. antarctica).

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    Bystrzejewska-Piotrowska, Grazyna; Urban, Pawel L

    2009-06-01

    The aim of our work was to assess photosynthetic plasticity of two hairgrass species with different ecological origins (a temperate zone species, Deschampsia caespitosa (L.) Beauv. and an Antarctic species, D. antarctica) and to consider how the anticipated climate change may affect vitality of these plants. Measurements of chlorophyll fluorescence showed that the photosystem II (PSII) quantum efficiency of D. caespitosa decreased during 4 d of incubation at 4 degrees C but it remained stable in D. antarctica. The fluorescence half-rise times were almost always lower in D. caespitosa than in D. antarctica, irrespective of the incubation temperature. These results indicate that the photosynthetic apparatus of D. caespitosa has poorer performance in these conditions. D. caespitosa reached the maximum photosynthesis rate at a higher temperature than D. antarctica although the values obtained at 8 degrees C were similar in both species. The photosynthetic water-use efficiency (photosynthesis-to-transpiration ratio, P/E) emerges as an important factor demonstrating presence of mechanisms which facilitate functioning of a plant in non-optimal conditions. Comparison of the P/E values, which were higher in D. antarctica than in D. caespitosa at low and medium temperatures, confirms a high degree of adjustability of the photosynthetic apparatus in D. antarctica and unveils the lack of such a feature in D. caespitosa.

  11. Cytological and reproductive aspects in the Caespitosa group of Paspalum

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    Marisa Toniolo Pozzobon

    2013-11-01

    Full Text Available Somatic chromosome numbers are reported for thirty four germplasm accessions of Paspalum, Caespitosa group, representing five different species. All five species have shown x=10 as the basic chromosome number. The diploid 2n=20 chromosome number was confirmed for P. chacoense and P. indecorum, as well as sexuality for the latter. This is the first report of the chromosome number and cytological behavior for P. ligulare (2n=20 and 40, P. pleostachyum (2n=20, 30 and 40 and P. redondense (2n=20 and 40. The present results document regular meiosis in diploid accessions, with primarily bivalent pairing at diakinesis and metaphase I. Polyploids of these species had irregular meiosis, with univalent, trivalent, and quadrivalent chromosome associations. Diploid accessions of P. pleostachyum and P. ligulare have shown a single meiotic embryo-sac, indicating sexual reproduction, while the triploid and one of the tetraploid accessions of P. pleostachyum have shown aposporic embryo-sacs of nucelar origin, and a few meiotic sacs, suggesting facultative apomixis. Identification of the new diploid accessions may prove useful for phylogenetic studies of Paspalum, as well as for breeding programs focusing on the forage potential of species of the Caespitosa group.

  12. Ribulose 1,5-bisphosphate dependent CO2 fixation in the halophilic archaebacterium, Halobacterium mediterranei

    International Nuclear Information System (INIS)

    Rawal, N.; Kelkar, S.M.; Altekar, W.

    1988-01-01

    The cell extract of Halobacterium mediterranei catalyses incorporation of 14 CO 2 into 3-phosphoglycerate in the presence of ribulose bisphosphate suggesting the existence of ribulose bisphosphate carboxylase activity in this halophilic archaebacterium

  13. Crystallization and preliminary X-ray analysis of d-2-hydroxyacid dehydrogenase from Haloferax mediterranei

    International Nuclear Information System (INIS)

    Domenech, J.; Baker, P. J.; Sedelnikova, S. E.; Rodgers, H. F.; Rice, D. W.; Ferrer, J.

    2009-01-01

    The d-2-hydroxyacid dehydrogenase from Haloferax mediterranei has been crystallized in two different forms. Diffraction data have been collected to 1.9 Å resolution for the non-productive ternary complex of the enzyme and to 2.7 Å for the selenomethionyl derivative. d-2-Hydroxyacid dehydrogenase (D2-HDH) from Haloferax mediterranei has been overexpressed in Escherichia coli, solubilized in 8 M urea and refolded by rapid dilution. The protein was purified and crystallized by the hanging-drop vapour-diffusion method using ammonium sulfate or PEG 3350 as precipitant. Two crystal forms representing the free enzyme and the nonproductive ternary complex with α-ketohexanoic acid and NAD + grew under these conditions. Crystals of form I diffracted to beyond 3.0 Å resolution and belonged to the monoclinic space group P2 1 , with unit-cell parameters a = 66.0, b = 119.6, c = 86.2 Å, β = 96.3°. Crystals of form II diffracted to beyond 2.0 Å resolution and belonged to the triclinic space group P1, with unit-cell parameters a = 66.5, b = 75.2, c = 77.6 Å, α = 109.1, β = 107.5, γ = 95.9°. The calculated values for V M and analysis of the self-rotation and self-Patterson functions suggest that the asymmetric unit in both crystal forms contains two dimers related by pseudo-translational symmetry

  14. Solid state fermentation and production of rifamycin SV using Amycolatopsis mediterranei.

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    Nagavalli, M; Ponamgi, S P D; Girijashankar, V; Venkateswar Rao, L

    2015-01-01

    Production of Rifamycin SV from cheaper agro-industrial by-products using mutant strain of Amycolatopsis mediterranei OVA5-E7 in solid state fermentation (SSF) was optimized. Among the agro-based substrates used, ragi bran was found suitable for maximizing the yield of Rifamycin SV (1310 mg 100 g(-1) ds). The yield can be further enhanced to 19·7 g Kg(-1) of dry substrate by supplementing the substrate with deoiled cotton cake (10% w/w) using optimized fermentation parameters such as maintaining 80% moisture, pH 7·0, 30°C incubation temperature, inoculum 25% v/w and carrying the solid state fermenting for 9 days. Manipulating these seven specifications, the end product yield achieved in our experimentation was 20 g of Rifamycin SV Kg(-1) ds. Eventually, an overall 5-fold improvement in Rifamycin SV production was achieved. Antibiotics such as rifamycin are broad-spectrum antimicrobial drugs used in large-scale worldwide as human medicine towards controlling diseases. Amycolatopsis mediterranei strain which produces this antibiotic was earlier used in submerged fermentation yielded lower amounts of rifamycin. By employing cheaper agro-industrial by-products, we produced upto 20 g rifamycin SV per Kg dry substrate used under optimized solid state fermentation conditions. Keeping in view, the role of rifamycin in meeting the medical demands of world's increasing population; we successfully used an improved strain on cheaper substrates with optimized fermentation parameters and achieved a 5-fold improvement in rifamycin SV production. © 2014 The Society for Applied Microbiology.

  15. Detailed analysis of the male reproductive system in a potential bio-indicator species - The marine invertebrate Galeolaria caespitosa (Polychaeta: Serpulidae.

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    Yonggang Lu

    Full Text Available For the first time, this study has systemically investigated the male reproductive system in a sessile broadcast-spawning marine invertebrate, Galeolaria caespitosa (Polychaeta: Serpulidae, which has significant potential as a bio-indicator species of coastal marine pollution. The abdomen of G. caespitosa was divided by intersegmental septa into over 80 trunk segments. Each segment served as a germinal chamber with a C-shaped gonadal arrangement consisting of several distinct compartments: a seminiferous epithelium (SE compartment located in the centre of the chamber, with each of its two ends connecting to a nurse cell (NC compartment and then an efferent duct (ED compartment. The SE compartment contained a multilayered seminiferous epithelium where spermatogenesis was initiated. Spermatids were released in pairs into the lumen of the SE compartment and then transported to the NC compartment where they underwent spermiogenesis with the support of secretory vesicles released by the nurse cells. Spermatozoa were stored in the ED compartment and subsequently released into the seawater through the vas deferens. Unlike vertebrates where germ cells differentiated in close proximity to the nurse cell population (i.e. Sertoli cells, the spermatogenic cells of G. caespitosa exhibited no direct contact with supporting cells at any spermatogenic stage. This finding suggested that the spermatogenesis in G. caespitosa was more dependent on intrinsic developmental programming than most species. Notwithstanding such differences, there were clear parallels between the male reproductive system of G. caespitosa and mammals, in terms of the structure and function. The independence of spermatogenic cells from supporting cells in G. caespitosa raised the possibility of inducing spermiogenesis in vitro, which would provide a useful tool to dissect the mechanisms underlying this complex cell differentiation process in invertebrates and other higher order animals.

  16. Recycling of Waste Streams of the Biotechnological Poly(hydroxyalkanoate Production by Haloferax mediterranei on Whey

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    Martin Koller

    2015-01-01

    Full Text Available For manufacturing “bioplastics” such as poly(hydroxyalkanoates (PHA, the combination of utilization of inexpensive carbon sources with the application of robust microbial production strains is considered a decisive step to make this process more cost-efficient and sustainable. PHA production based on surplus whey from dairy industry was accomplished by the extremely halophile archaeon Haloferax mediterranei. After fermentative production of PHA-rich biomass and the subsequent cell harvest and downstream processing for PHA recovery, environmentally hazardous, highly saline residues, namely spent fermentation broth and cell debris, remain as residues. These waste streams were used for recycling experiments to assess their recyclability in subsequent production processes. It was demonstrated that spent fermentation broth can be used to replace a considerable part of fresh saline fermentation medium in subsequent production processes. In addition, 29% of the expensive yeast extract, needed as nitrogen and phosphate source for efficient cultivation of the microorganism, can be replaced by cell debris from prior cultivations. The presented study provides strategies to combine the reduction of costs for biomediated PHA production with minimizing ecological risks by recycling precarious waste streams. Overall, the presented work shall contribute to the quick economic success of these promising biomaterials.

  17. A feedback regulatory model for RifQ-mediated repression of rifamycin export in Amycolatopsis mediterranei.

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    Lei, Chao; Wang, Jingzhi; Liu, Yuanyuan; Liu, Xinqiang; Zhao, Guoping; Wang, Jin

    2018-01-29

    Due to the important role of rifamycin in curing tuberculosis infection, the study on rifamycin has never been stopped. Although RifZ, which locates within the rifamycin biosynthetic cluster, has recently been characterized as a pathway-specific regulator for rifamycin biosynthesis, little is known about the regulation of rifamycin export. In this work, we proved that the expression of the rifamycin efflux pump (RifP) was regulated by RifQ, a TetR-family transcriptional regulator. Deletion of rifQ had little impact on bacterial growth, but resulted in improved rifamycin production, which was consistent with the reverse transcription PCR results that RifQ negatively regulated rifP's transcription. With electrophoretic mobility shift assay and DNase I Footprinting assay, RifQ was found to directly bind to the promoter region of rifP, and a typical inverted repeat was identified within the RifQ-protected sequences. The transcription initiation site of rifP was further characterized and found to be upstream of the RifQ binding sites, well explaining the RifQ-mediated repression of rifP's transcription in vivo. Moreover, rifamycin B (the end product of rifamycin biosynthesis) remarkably decreased the DNA binding affinity of RifQ, which led to derepression of rifamycin export, reducing the intracellular concentration of rifamycin B as well as its toxicity against the host. Here, we proved that the export of rifamycin B was repressed by RifQ in Amycolatopsis mediterranei, and the RifQ-mediated repression could be specifically relieved by rifamycin B, the end product of rifamycin biosynthesis, based on which a feedback model was proposed for regulation of rifamycin export. With the findings here, one could improve the antibiotic yield by simply inactivating the negative regulator of the antibiotic transporter.

  18. Anti-spasmodic assessment of hydroalcoholic extract and essential oil of aerial part of Pycnocycla caespitosa Boiss. & Hausskn on rat ileum contractions.

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    Sadraei, Hassan; Asghari, Gholamreza; Alipour, Mahdi

    2016-01-01

    Pycnocycla caespitosa is an essential oil-containing plant naturally growing in southwest of Iran. The extract of this plant has been used as remedy in traditional medicine. Another species of Pycnocyla (P. spinosa) possessed antispasmodic activity. The pharmacological objective of this study was to look for relaxant effect of hydroalcoholic extract and essential oil of P. caespitosa on rat isolated ileum contractions for comparison with loperamide. The essential oil and the hydroalcoholic extract were prepared by hydrodistillation and percolation techniques, respectively. For antispasmodic studies a section of rat ileum was suspended in an organ bath containing Tyrode's solution. The tissue was stimulated with electrical field stimulation (EFS), KCl (80 mM) and acetylcholine (ACh 0.5 μM). The tissue was kept under 1 g tension at 37°C and continuously gassed with O2. The essential oil content in the aerial parts of P. caespitosa was found to be 0.16 % ml/g. The essential oil was analyzed by gas chromatography and gas chromatography-mass spectrometry. Seventy constituents, representing 97 % of the oil were identified. The major components of the oil were carvacrol (7.1%), β-eudesmol (6.4 %), ρ-cymene (5.7%), caryophyllene oxide (3.6%), α-pinine (1.4%) and α-phelandrene (1.1%). The hydroalcoholic extract of P. caespitosa inhibited the response to KCl (IC50 = 48 ± 3 μg/ml), ACh (IC50 = 61 ± 14.7 μg/ml) and EFS (IC50 = 77 ± 17 μg/ml) in a concentration-dependent manner. The essential oil of P. caespitosa also inhibited rat ileum contractions. The IC50 values for KCl, ACh and EFS were 9.2 ± 1.2 μg/ml, 7.6 ± 0.8 μg/ml and 6.4 ± 0.8 μg/ml, respectively. The inhibitory effect of both the essential oil and the extract were reversible. This research confirms the anti-spasmodic activity of both the essential oil and the extract of P. caespitosa on smooth muscle contraction of ileum.

  19. Effect of Weather on the Occurrence of Puccinia Graminis Subsp. Graminicola and Puccinia Coronata F. Sp. Lolii at Lolium Perenne L. and Deschampsia Caespitosa (L. P. B.

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    Monika Novotná

    2017-01-01

    Full Text Available Monitoring of Puccinia graminis subsp. graminicola and Puccinia coronata f. sp. lolii was carried out in Plant breeding station called Větrov. The pathogens were estimated on turf grass (Lolium perenne L., Deschampsia caespitosa (L. P. B. from 2009 to 2014. Puccinia graminis subsp. graminicola was detected in the increased level in 2009 and 2012. The highest amount of mixed infections was determined in 2014 because of the warmest winter from all monitored years and low precipitations. Significant differences were found out in the resistance of similar plant materials grown in different fields. Significant effect of weather conditions and supposed effect of different infectious pressure on various fields were reflected in these facts. At evaluated grasses, the highest (P < 0.05 occurence of Puccinia graminis subsp. graminicola. Lolium perenne L. was observed and the infection of Puccinia graminis subsp. graminicola (P < 0.05 was determined higher than in Deschampsia caespitosa (L. P. B.

  20. Production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) by Haloferax mediterranei using rice-based ethanol stillage with simultaneous recovery and re-use of medium salts.

    Science.gov (United States)

    Bhattacharyya, Anirban; Saha, Jayeeta; Haldar, Saubhik; Bhowmic, Asit; Mukhopadhyay, Ujjal Kumar; Mukherjee, Joydeep

    2014-03-01

    Haloferax mediterranei holds promise for competitive industrial-scale production of polyhydroxyalkanoate (PHA) because cheap carbon sources can be used thus lowering production costs. Although high salt concentration in production medium permits a non-sterile, low-cost process, salt disposal after process completion is a problem as current environmental standards do not allow total dissolved solids (TDS) above 2000 mg/l in discharge water. As the first objective of this work, the waste product of rice-based ethanol industry, stillage, was used for the production of PHA by H. mediterranei in shake flasks. Utilization of raw stillage led to 71 ± 2% (of dry cell weight) PHA accumulation and 16.42 ± 0.02 g/l PHA production. The product yield coefficient was 0.35 while 0.17 g/l h volumetric productivity was attained. Simultaneous reduction of BOD5 and COD values of stillage by 83% was accomplished. The PHA was isolated by osmotic lysis of cells, purification by sodium dodecyl sulfate and organic solvents. The biopolymer was identified as poly-3-(hydroxybutyrate-co-15.4 mol%-hydroxyvalerate) (PHBV). This first report on utilization of rice-based ethanol stillage for PHBV production by H. mediterranei is currently the most cost effective. As the second objective, directional properties of decanoic acid together with temperature dependence of water solubility in decanoic acid were applied for two-stage desalination of the spent stillage medium. We report for the first time, recovery and re-use of 96% of the medium salts for PHA production thus removing the major bottleneck in the potential application of H. mediterranei for industrial production of PHBV. Final discharge water had TDS content of 670 mg/l.

  1. Exposure of spermatozoa to dibutyl phthalate induces abnormal embryonic development in a marine invertebrate Galeolaria caespitosa (Polychaeta: Serpulidae).

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    Lu, Yonggang; Lin, Minjie; Aitken, Robert John

    2017-10-01

    In this study, we have investigated the impact of dibutyl phthalate (DBP) on early embryogenesis in a sessile marine invertebrate, Galeolaria caespitosa. DBP was found to induce sperm dysfunction as well as impaired and defective embryogenesis characterised by a particular pattern of abnormality. Thus, after the first cleavage, one blastomere in these abnormal embryos was able to carry out further mitoses, while the other arrested. Analysis of microtubules, chromosomes and actin filaments demonstrated that the mitotic spindles in the abnormal embryos were irregularly bent, shortened and unable to anchor to the cortex, resulting in the defective segregation of chromosomes. Within the non-dividing blastomeres, karyokinesis was found to continue at a slow pace as indicated by the presence of multiple sets of abnormal mitotic spindles. However, cytokinesis had been disrupted in these arrested cells due to a failure to assemble the contractile actin ring, as a result of which one pole of the embryos remained as one large, undivided cell. DBP was found to suppress the activity of superoxide dismutase in spermatozoa and, in association with this change, DBP-treated cells experienced oxidative stress as indicated by the presence of lipid aldehydes, such as 4-hydroxynonenal (4-HNE) in the sperm acrosome and neck. Adduction of lipid aldehydes at the level of the acrosome would be expected to impede the acrosome reaction and account for the significant decrease in fertilisation rates. 4-HNE generated as a consequence of lipid peroxidation in the sperm neck resulted in alkylation of the sperm centrioles. Such paternally damaged centrioles were inherited by the embryos and disrupted cytoskeletal protein organisation during early cleavage, generating the observed abnormalities in embryonic development. This research emphasises the vulnerability of spermatozoa to oxidative damage and highlights novel potential mechanisms for reproductive toxicity involving the alkylation of

  2. Comparison of four phaC genes from Haloferax mediterranei and their function in different PHBV copolymer biosyntheses in Haloarcula hispanica

    DEFF Research Database (Denmark)

    Han, Jing; Li, Ming; Hou, Jing

    2010-01-01

    , PhaCHme and PhaEHme, has been identified in this strain, and shown to account for the PHBV biosynthesis. RESULTS: With the aid of the genome sequence of Hfx. mediterranei CGMCC 1.2087, three additional phaC genes (designated phaC1, phaC2, and phaC3) were identified, which encoded putative PhaCs. Like......, among the four genes, only phaCHme was transcribed under PHA-accumulating conditions in the wild-type strain. However, heterologous coexpression of phaEHme with each phaC gene in Haloarcula hispanica PHB-1 showed that all PhaCs, except PhaC2, could lead to PHBV accumulation with various 3HV fractions...... meet various application requirements. CONCLUSION: We discover three cryptic phaC genes in Hfx. mediterranei, and demonstrate that genetic engineering of these newly identified phaC genes has biotechnological potential for PHBV production with tailor-made material properties....

  3. Mass production of C50 carotenoids by Haloferax mediterranei in using extruded rice bran and starch under optimal conductivity of brined medium.

    Science.gov (United States)

    Chen, C Will; Hsu, Shu-hui; Lin, Ming-Tse; Hsu, Yi-hui

    2015-12-01

    Microbial carotenoids have potentially healthcare or medical applications. Haloferax mediterranei was difficult to economically grow into a large quantities as well as producing a valuable pigment of carotenoids. This study reports a novel investigation into the optimal conductivity on the mass production of carotenoids from H. mediterranei. The major component at about 52.4% in the extracted red pigment has been confirmed as bacterioruberin, a C50 carotenoids, by liquid chromatography separation and mass spectrometry analysis. By maintaining higher conductivity of 40 S/m in the brined medium, the cell concentration attained to 7.73 × 10(9) cells/L with low pigments concentration of 125 mg/L. When the conductivity was controlled at about 30 S/m, we obtained the highest cell concentration to 1.29 × 10(10) cells/L with pigments of 361.4 mg/L. When the conductivity was maintained at optimal 25 S/m, the pigments can be increased to maximum value of 555.6 mg/L at lower cell concentration of 9.22 × 10(9) cells/L. But conductivity below 20 S/m will cause the significant decrease in cell concentration as well as pigments due to the osmotic stress around the cells. Red pigment of carotenoids from an extremely halophilic archaebacterium could be efficiently produced to a high concentration by applying optimal conductivity control in the brined medium with extruded low-cost rice bran and corn starch.

  4. Integration of poly-3-(hydroxybutyrate-co-hydroxyvalerate) production by Haloferax mediterranei through utilization of stillage from rice-based ethanol manufacture in India and its techno-economic analysis.

    Science.gov (United States)

    Bhattacharyya, Anirban; Jana, Kuntal; Haldar, Saubhik; Bhowmic, Asit; Mukhopadhyay, Ujjal Kumar; De, Sudipta; Mukherjee, Joydeep

    2015-05-01

    Haloferax mediterranei has potential for economical industrial-scale production of polyhydroxyalkanoate (PHA) as it can utilize cheap carbon sources, has capacity for nonsterile cultivation and allows simple product recovery. Molasses-based Indian distilleries are converting themselves to cereal-based distilleries. Waste stillage (14 l) of rice-based ethanol industry was used for the production of PHA by H. mediterranei in the simple plug-flow reactor configuration of the activated sludge process. Cells utilized stillage and accumulated 63 ± 3 % PHA of dry cell weight and produced 13.12 ± 0.05 g PHA/l. The product yield coefficient was 0.27 while 0.14 g/l h volumetric productivity was reached. Simultaneous lowering of 5-day biochemical oxygen demand and chemical oxygen demand values of stillage by 82 % was attained. The biopolymer was characterized as poly-3-(hydroxybutyrate-co-17.9 mol%-hydroxyvalerate) (PHBV). Directional properties of decanoic acid jointly with temperature-dependent water solubility in decanoic acid were employed for two-step desalination of the spent stillage medium in a cylindrical baffled-tank with an immersed heater and a stirrer holding axial and radial impellers. 99.3 % of the medium salts were recovered and re-used for PHA production. The cost of PHBV was estimated as US$2.05/kg when the annual production was simulated as 1890 tons. Desalination contributed maximally to the overall cost. Technology and cost-analysis demonstrate that PHA production integrated with ethanol manufacture is feasible in India. This study could be the basis for construction of a pilot plant.

  5. Chromosome number and microsporogenesis in Paspalum maritimum (caespitosa group; gramineae

    Directory of Open Access Journals (Sweden)

    Eleniza de Victor Adamowski

    2000-01-01

    Full Text Available Despite of economic importance of the genus Paspalum, little or no cytologic information is available for many species. This is the first report about chromosome number and meiotic behavior for P. maritimum. The three accessions collected in Amapá State (North Region of Brazil were tetraploid (2n=4x=40 with the chromosomes associating predominantly as bivalents. The low frequency of multivalents suggested that they were segmental allotetraploids. All accessions showed a low rate of meiotic irregularities, and as a consequence the pollen fertility was high. The results suggested that these accessions presented potential for use in a hybridization program.Apesar da importância econômica do gênero Paspalum, pouca ou nenhuma informação citológica é encontrada para a maioria das espécies. Esta é a primeira descrição sobre número de cromossomos e comportamento meiótico para P. maritimum. Os três acessos coletados no Estado do Amapá mostraram-se tetraplóides (2n=4x=40 com os cromossomos associando-se predominantemente como bivalentes. A baixa ocorrência de associações multivalentes sugere que estes acessos sejam alotetraplóides segmentais. Todos os acessos mostraram uma baixa frequência de anormalidades meióticas e, como consequência, uma alta fertilidade de pólen, mostrando potencial para serem utilizados em programas de hibridização.

  6. First Evidence of an Important Organic Matter Trophic Pathway between Temperate Corals and Pelagic Microbial Communities.

    Directory of Open Access Journals (Sweden)

    J A Fonvielle

    Full Text Available Mucus, i.e., particulate and dissolved organic matter (POM, DOM released by corals, acts as an important energy carrier in tropical ecosystems, but little is known on its ecological role in temperate environments. This study assessed POM and DOM production by the temperate coral Cladocora caespitosa under different environmental conditions. The subsequent enzymatic degradation, growth of prokaryotes and virus-like particles (VLPs as well as changes in the structure of the prokaryotic communities were also monitored. C. caespitosa produced an important quantity of mucus, which varied according to the environmental conditions (from 37.8 to 67.75 nmol carbon h-1 cm-2, but remained higher or comparable to productions observed in tropical corals. It has an important nutritional value, as highlighted by the high content in dissolved nitrogen (50% to 90% of the organic matter released. Organic matter was rapidly degraded by prokaryotes' enzymatic activities, and due to its nitrogen content, aminopeptidase activity was 500 fold higher than the α-glucosidase activity. Prokaryotes, as well as VLPs, presented a rapid growth in the mucus, with prokaryote production rates as high as 0.31 μg h-1 L-1. Changes in bacterial and archaeal communities were observed in the ageing mucus and between mucus and the water column, suggesting a clear impact of mucus on microorganism diversity. Overall, our results show that the organic matter released by temperate corals, such as C. caespitosa, which can form reef structures in the Mediterranean Sea, stimulates microbial activity and thereby functions as a significant carbon and nitrogen supplier to the microbial loop.

  7. Experimental evidence of the synergistic effects of warming and invasive algae on a temperate reef-builder coral.

    Science.gov (United States)

    Kersting, Diego K; Cebrian, Emma; Casado, Clara; Teixidó, Núria; Garrabou, Joaquim; Linares, Cristina

    2015-12-22

    In the current global climate change scenario, stressors overlap in space and time, and knowledge on the effects of their interaction is highly needed to understand and predict the response and resilience of organisms. Corals, among many other benthic organisms, are affected by an increasing number of global change-related stressors including warming and invasive species. In this study, the cumulative effects between warming and invasive algae were experimentally assessed on the temperate reef-builder coral Cladocora caespitosa. We first investigated the potential local adaptation to thermal stress in two distant populations subjected to contrasting thermal and necrosis histories. No significant differences were found between populations. Colonies from both populations suffered no necrosis after long-term exposure to temperatures up to 29 °C. Second, we tested the effects of the interaction of both warming and the presence of invasive algae. The combined exposure triggered critical synergistic effects on photosynthetic efficiency and tissue necrosis. At the end of the experiment, over 90% of the colonies subjected to warming and invasive algae showed signs of necrosis. The results are of particular concern when considering the predicted increase of extreme climatic events and the spread of invasive species in the Mediterranean and other seas in the future.

  8. [Cloning, expression and transcriptional analysis of biotin carboxyl carrier protein gene (accA) from Amycolatopsis mediterranei U32 ].

    Science.gov (United States)

    Lu, Jie; Yao, Yufeng; Jiang, Weihong; Jiao, Ruishen

    2003-02-01

    Acetyl CoA carboxylase (EC 6.4.1.2, ACC) catalyzes the ATP-dependent carboxylation of acetyl CoA to yield malonyl CoA, which is the first committed step in fatty acid synthesis. A pair of degenerate PCR primers were designed according to the conserved amino acid sequence of AccA from M. tuberculosis and S. coelicolor. The product of the PCR amplification, a DNA fragment of 250bp was used as a probe for screening the U32 genomic cosmid library and its gene, accA, coding the biotinylated protein subunit of acetyl CoA carboxylase, was successfully cloned from U32. The accA ORF encodes a 598-amino-acid protein with the calculated molecular mass of 63.7kD, with 70.1% of G + C content. A typical Streptomyces RBS sequence, AGGAGG, was found at the - 6 position upstream of the start codon GTG. Analysis of the deduced amino acid sequence showed the presence of biotin-binding site and putative ATP-bicarbonate interaction region, which suggested the U32 AccA may act as a biotin carboxylase as well as a biotin carrier protein. Gene accA was then cloned into the pET28 (b) vector and expressed solubly in E. coli BL21 (DE3) by 0.1 mmol/L IPTG induction. Western blot confirmed the covalent binding of biotin with AccA. Northern blot analyzed transcriptional regulation of accA by 5 different nitrogen sources.

  9. ATP Supply May Contribute to Light-Enhanced Calcification in Corals More Than Abiotic Mechanisms

    Directory of Open Access Journals (Sweden)

    Giovanni Galli

    2018-03-01

    Full Text Available Zooxanthellate corals are known to increase calcification rates when exposed to light, a phenomenon called light-enhanced calcification that is believed to be mediated by symbionts' photosynthetic activity. There is controversy over the mechanism behind this phenomenon, with hypotheses coarsely divided between abiotic and biologically-mediated mechanisms. At the same time, accumulating evidence shows that calcification in corals relies on active ion transport to deliver the skeleton building blocks into the calcifying medium, making it is an energetically costly activity. Here we build on generally accepted conceptual models of the coral calcification machinery and conceptual models of the energetics of coral-zooxanthellae symbiosis to develop a model that can be used to isolate the biologically-mediated and abiotic effects of photosynthesis, respiration, temperature, and seawater chemistry on coral calcification rates and related metabolic costs. We tested this model on data from the Mediterranean scleractinian Cladocora caespitosa, an acidification resistant species. We concluded that most of the variation in calcification rates due to photosynthesis, respiration and temperature can be attributed to biologically-mediated mechanisms, in particular to the ATP supplied to the active ion transports. Abiotic effects are also present but are of smaller magnitude. Instead, the decrease in calcification rates caused by acidification, albeit small, is sustained by both abiotic and biologically-mediated mechanisms. However, there is a substantial extra cost of calcification under acidified conditions. Based on these findings and on a literature review we suggest that the energy aspect of coral calcification might have been so far underappreciated.

  10. Analytical pyrolysis-based study on intra-skeletal organic matrices from Mediterranean corals.

    Science.gov (United States)

    Adamiano, Alessio; Goffredo, Stefano; Dubinsky, Zvy; Levy, Oren; Fermani, Simona; Fabbri, Daniele; Falini, Giuseppe

    2014-09-01

    Off-line analytical pyrolysis combined with gas chromatography–mass spectroscopy (GC–MS), directly or after trimethylsilylation, along with infrared spectroscopy and amino acid analysis was applied for the first time to the characterization of the intra-skeletal organic matrix (OM) extracted from four Mediterranean hard corals. They were diverse in growth form and trophic strategy namely Balanophyllia europaea and Leptopsammia pruvoti—solitary corals, only the first having zooxanthelle—and Cladocora caespitosa and Astroides calycularis—colonial corals, only the first with zooxanthelle. Pyrolysis products evolved from OM could be assigned to lipid (e.g. fatty acids, fatty alcohols, monoacylglicerols), protein (e.g. 2,5-diketopiperazines, DKPs) and polysaccharide (e.g. anhydrosugars) precursors. Their quantitative distribution showed for all the species a low protein content with respect to lipids and polysaccharides. A chemometric approach using principal component analysis (PCA) and clustering analysis was applied on OM mean amino acidic compositions. The small compositional diversity across coral species was tentatively related with coral growth form. The presence of N-acetyl glucosamine markers suggested a functional link with other calcified tissues containing chitin. The protein fraction was further investigated using novel DKP markers tentatively identified from analytical pyrolysis of model polar linear dipeptides. Again, no correlation was observed in relation to coral ecology. These analytical results revealed that the bulk structure and composition of OMs among studied corals are similar, as it is the textural organization of the skeleton mineralized units. Therefore, they suggest that coral’s biomineralization is governed by similar macromolecules, and probably mechanisms, independently from their ecology.

  11. Biosynthesis, Characterization, and Hemostasis Potential of Tailor-Made Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Produced by Haloferax mediterranei

    DEFF Research Database (Denmark)

    Han, Jing; Wu, Linping; Hou, Jing

    2015-01-01

    . Consistently, two Tg were observed in the DSC curves of O-PHBV. The "blocky" feature of O-PHBV enhanced crystallinity percentages and improved Young's modulus. Notably, the film of one O-PHBV copolymer, O-PHBV-1, showed unique foveolar cluster-like surface morphology with high hydrophobicity and roughness...

  12. Hierarchical amino acid utilization and its influence on fermentation dynamics: rifamycin B fermentation using Amycolatopsis mediterranei S699, a case study

    DEFF Research Database (Denmark)

    Bapat, Prashant Madhusudhan; Das, D.; Sohoni, Sujata Vijay

    2006-01-01

    Background: Industrial fermentation typically uses complex nitrogen substrates which consist of mixture of amino acids. The uptake of amino acids is known to be mediated by several amino acid transporters with certain preferences. However, models to predict this preferential uptake are not availa......Background: Industrial fermentation typically uses complex nitrogen substrates which consist of mixture of amino acids. The uptake of amino acids is known to be mediated by several amino acid transporters with certain preferences. However, models to predict this preferential uptake...... predicted simultaneous uptake of amino acids at low cas concentrations and sequential uptake at high cas concentrations. The simulated profile of the key enzymes implies the presence of specific transporters for small groups of amino acids. Conclusion: The work demonstrates utility of the cybernetic model...... unravels formation and utilization of ammonia as well as its inhibitory role during amino acid uptake. Our results have implications for model based optimization and monitoring of other industrial fermentation processes involving complex nitrogen substrate....

  13. Indice per la valutazione della qualità ecologica dei bacini artificiali mediterranei (MedPTI) a partire dalla composizione del fitoplancton: documento presentato al Ministero dell’Ambiente e della tutela del territorio e del mare

    OpenAIRE

    Marchetto, Aldo; Lugliè, Antonella Gesuina Laura; Padedda, Bachisio Mario; Mariani, Maria Antonietta

    2007-01-01

    Secondo la Direttiva 2000/60/CE (WFD, Water Framework Directive), la valutazione della qualità ecologica dei corpi idrici deve essere ottenuta con l’uso di indici numerici costruiti a partire dai parametri biologici, confrontando il valore assunto nel sito in esame con quello di un sito di riferimento, attraverso il calcolo di un quoziente di qualità ecologica (Ecological quality ratio, EQR). L’indice qui proposto è stato sottoposto alla procedura di intercalibrazione, per otte...

  14. Microsatellite primers in Oenothera harringtonii (Onagraceae), an annual endemic to the shortgrass prairie of Colorado.

    Science.gov (United States)

    Skogen, Krissa A; Hilpman, Evan T; Todd, Sadie L; Fant, Jeremie B

    2012-08-01

    Microsatellite markers were developed in the annual herb, Oenothera harringtonii, to investigate patterns of genetic diversity, gene flow, and parentage within and among populations of this Colorado endemic. Ten polymorphic loci were identified in O. harringtonii and tested in four populations sampled across the range of the species. These loci contained trinucleotide repeats with 7-29 alleles per locus. Nine of the 10 loci also amplified in O. caespitosa subsp. macroglottis, O. caespitosa subsp. marginata, and O. caespitosa subsp. navajoensis. In addition, we optimized three markers developed for O. biennis and provide reports of their effectiveness in all four taxa. These results indicate the utility of these markers in O. harringtonii for future studies of genetic structure, gene flow, and parentage as well as their applicability in other members of the O. caespitosa species complex.

  15. Optimization of industrial production of rifamycin B by Amycolatopsis ...

    African Journals Online (AJOL)

    Optimization of the physical and physiological parameters of the fermentation process using the gene amplified variant of Amycolatopsis mediterranei (NCH) was carried out. Optimization of the physical parameters by controlling the pH at 6.5 for 3 days then at 7 thereafter and by adjustment of aeration at 1 vvm for 3 days ...

  16. New Species of Orchids from Vietnam

    Directory of Open Access Journals (Sweden)

    Leonid V. Averyanov

    2007-12-01

    Full Text Available Identification of herbarium specimens collected in course of field exploration works in Vietnam during 2005-2007 revealed ten species of orchids new for science. Illustrated descriptions are provided for each discovered species, which are named as Anoectochilus papillosus, Arundina caespitosa, Bulbophyllum paraemarginatum, B. sinhoënse, Cheirostylis foliosa, Goodyera rhombodoides, Liparis rivularis, Oberonia multidentata, O. trichophora and Sunipia nigricans.

  17. New floristic records in the Balkans: 2

    DEFF Research Database (Denmark)

    2006-01-01

    caespitosa subsp. alpina (34), Plantago maritima subsp. serpentina (38), Thymus callieri subsp. callieri (31); Montenegro - Asperula hercegovina (73); Serbia - Allium paniculatum subsp. villosum (98), Viola obliqua (57); Turkey-in-Europe - Chamaecytisus jankae (37). subsp. (98), (57); Turkey-in-Europe - (37...

  18. Distribution and biomass estimation of shell-boring algae in the intertidal area at Goa India

    Digital Repository Service at National Institute of Oceanography (India)

    Raghukumar, C.; Sharma, S.; Lande, V.

    The distribution and frequency of shell-boring green and blue-green algae in the intertidal at Goa, India were studied. The green alga Gomontia sp. and the blue green algae Hyella caespitosa Bornet et Flahault, H. gigas Lucas et Golubic...

  19. Stem rust (Puccinia graminis ssp. graminicola Urban its hosts and harmfulness in grasses grown for seed

    Directory of Open Access Journals (Sweden)

    Maria Prończuk

    2013-12-01

    Full Text Available Stem rust development on four species of grasses was studied in field experiments conducted at Radzików in 1997-2001. Population of Puccinia graminis ssp. graminicola from different hosts was characterised and their harmfulness for grass grown for seed was estimated. The materials for study were ecotypes and strains of Lolium perenne, Festuca rubra, Poa pratensis and Deschampsia caespitosa collected in breeding nursery and cultivars and strains of L.perenne, F.rubra, P.pratensis cultivated for seed. It was found that the changes in environmental conditions during last years influenced earlier occurrence of stem rust on grasses in Poland. All examined species were the host of P.graminis ssp. graminicola, however the period of infection of particular hosts were different. L.perenne and D.caespitosa were infected in early summer but F.rubra and P.pratensis in late summer or in the autumn. Morphological analysis of spores of P.graminis ssp. graminicola have shoved significant differences between populations obtained from L.perenne and D.caespitosa. Some differences were found between populations from F.rubra and P.pratensis also, but they need more study. Every year occurrence of stem rust on L.perenne and D.caespitosa and its relation with spring temperature in Radzików indicated that populations of patogen could overwinter in local turf. Incidental appearance of stem rust on F.rubra and P.pratensis in centre of Poland allowed to suppose that spores of these forms might be transfer by wind from other regions. The investigation revealed that stem rust can be dangerous for L.perenne grown for seed when infection occurs at flowering time. It has been established that infection of F.rubra and P.pratensis in autumn should not be disregarded. Damages of leaves by P.graminis ssp. graminicola substantially limited plant heading in the next year.

  20. A marine bacterium, Micrococcus MCCB 104, antagonistic to vibrios in prawn larval rearing systems.

    Science.gov (United States)

    Jayaprakash, N S; Pai, S Somnath; Anas, A; Preetha, R; Philip, Rosamma; Singh, I S Bright

    2005-12-30

    A marine bacterium, Micrococcus MCCB 104, isolated from hatchery water, demonstrated extracellular antagonistic properties against Vibrio alginolyticus, V. parahaemolyticus, V. vulnificus, V. fluviallis, V. nereis, V. proteolyticus, V. mediterranei, V cholerae and Aeromonas sp., bacteria associated with Macrobrachium rosenbergii larval rearing systems. The isolate inhibited the growth of V. alginolyticus during co-culture. The antagonistic component of the extracellular product was heat-stable and insensitive to proteases, lipase, catalase and alpha-amylase. Micrococcus MCCB 104 was demonstrated to be non-pathogenic to M. rosenbergii larvae.

  1. L'insegnamento dell'evoluzione nei manuali scolastici di otto paesi costieri del Mediterraneo

    OpenAIRE

    Quessada, Marie-Pierre; Clément, Pierre; Valente, Adriana; Selmaoui, Sabah

    2012-01-01

    I manuali scolastici di biologia di otto paesi mediterranei affrontano il tema dell'evoluzione in modi molto differenti. In Algeria e in Libano, l'argomento non viene trattato o non più. In Tunisia, il tema è trattato nella classe terminale (ovvero nell'ultima classe del Liceo n.d.R.), ma senza un capitolo specifico sull'evoluzione umana. In Maroccco, l'evoluzione è stata appena reintrodotta in classe terminale ma senza l'evoluzione umana. Il tema è più ampiamente coperto a Cipro e a Malta, e...

  2. The Function of Gas Vesicles in Halophilic Archaeaand Bacteria: Theories and Experimental Evidence

    Science.gov (United States)

    Oren, Aharon

    2012-01-01

    A few extremely halophilic Archaea (Halobacterium salinarum, Haloquadratum walsbyi, Haloferax mediterranei, Halorubrum vacuolatum, Halogeometricum borinquense, Haloplanus spp.) possess gas vesicles that bestow buoyancy on the cells. Gas vesicles are also produced by the anaerobic endospore-forming halophilic Bacteria Sporohalobacter lortetii and Orenia sivashensis. We have extensive information on the properties of gas vesicles in Hbt. salinarum and Hfx. mediterranei and the regulation of their formation. Different functions were suggested for gas vesicle synthesis: buoying cells towards oxygen-rich surface layers in hypersaline water bodies to prevent oxygen limitation, reaching higher light intensities for the light-driven proton pump bacteriorhodopsin, positioning the cells optimally for light absorption, light shielding, reducing the cytoplasmic volume leading to a higher surface-area-to-volume ratio (for the Archaea) and dispersal of endospores (for the anaerobic spore-forming Bacteria). Except for Hqr. walsbyi which abounds in saltern crystallizer brines, gas-vacuolate halophiles are not among the dominant life forms in hypersaline environments. There only has been little research on gas vesicles in natural communities of halophilic microorganisms, and the few existing studies failed to provide clear evidence for their possible function. This paper summarizes the current status of the different theories why gas vesicles may provide a selective advantage to some halophilic microorganisms. PMID:25371329

  3. Selection of the N-acylhomoserine lactone-degrading bacterium Alteromonas stellipolaris PQQ-42 and of its potential for biocontrol in aquaculture

    Directory of Open Access Journals (Sweden)

    Marta eTorres

    2016-05-01

    Full Text Available The production of virulence factors by many pathogenic microorganisms depends on the intercellular communication system called quorum sensing (QS, which involves the production and release of signal molecules known as autoinducers. Based on this, new-therapeutic strategies have emerged for the treatment of a variety of infections, such as the enzymatic degradation of signalling molecules, known as quorum quenching (QQ. In this study, we present the screening of QQ activity amongst 450 strains isolated from a bivalve hatchery in Granada (Spain, and the selection of the strain PQQ-42, which degrades a wide range of N-acylhomoserine lactones (AHLs. The selected strain, identified as Alteromonas stellipolaris, degraded the accumulation of AHLs and reduced the production of protease and chitinase and swimming motility of a Vibrio species in co-cultivation experiments in vitro. In the bio-control experiment, strain PQQ-42 significantly reduced the pathogenicity of V. mediterranei VibC-Oc-097 upon the coral Oculina patagonica showing a lower degree of tissue damage (29.25±14.63 % in its presence, compared to when the coral was infected with V. mediterranei VibC-Oc-097 alone (77.53±13.22 %. Our results suggest that this AHL-degrading bacterium may have biotechnological applications in aquaculture.

  4. Stability of rifampin in SyrSpend SF.

    Science.gov (United States)

    Sorenson, Bridget; Whaley, Paul

    2013-01-01

    Rifampin is a bactericidal antibiotic drug of the rifamycin group. It is a semisynthetic drug produced from the bacterium Streptomyces mediterranei. Rifampin is commonly manufactured in capsule, tablet, and syrup dosage solutions containing alcohol or sorbitol. The objective of this study was to determine the stability of rifampin in SyrSpend SF. The studied samples were compounded into 25-mg/mL suspensions and stored in low-actinic bottles at room temperature and refrigerated conditions. Samples were assayed at each time point out to 60 days by a stability-indicating high-performance liquid chromatography method. The method was validated for its specificity through forced-degradation studies. The sample remained within 90% to 110% of the initial concentration throughout the course of the study. Based on data collected, the beyond-use date of the preparation is at least 60 days when refrigerated or stored at room temperature and protected from light.

  5. Effect Of Laser Irradiation On Biosynthesis Of Antibiotics

    International Nuclear Information System (INIS)

    SALAMA, S.M.; MAHMOUD, S.M.; EL-KABBANY, H.M.

    2010-01-01

    An investigation concerning the effect of He:Ne laser irradiation on some isolated actinomycetes was carried out. Seven isolated actinomycetes were considered as most potent producing broad spectrum antibiotics. The strains have been identified on the basis of taxonomic studies as Streptomyces nogalator (H12), Streptomyces griseoluteus (YM23), Amycolatopsis mediterranei (B40), Glycomyces harbinensis (KA16), Streptosporangium corrugatum (B67), Streptoalloteichus hindustamus (B74) and Streptomyces aurantiogriseus (S15). Seven genotypes were chosen after He:Ne laser irradiation as representative for each isolated strain. The active metabolite from most potent genotype of Streptomyces nogalator (H12) was extracted by ethyl acetate then concentrated under vacuo and the crude fraction was purified using thin layer and column chromatography. Ultra violet maximum absorption peak was recorded at 231.5 and 206 nm. The IR and NMR were consulted to confirm the chemical characteristics of the antibiotic. The biological activity and toxicity were also investigated.

  6. Chemotaxonomic Evaluation of Species of Turkish Salvia: Fatty Acid Composition of Seed Oils. II

    Directory of Open Access Journals (Sweden)

    Turgut Kılıç

    2007-05-01

    Full Text Available Fatty acids composition of seed oil of Salvia viridis, S. hydrangea, S. blepharochleana, S. chianantha, S. staminea, S. hypergeia,, S. cilicica, S. caespitosa, S. sclarea, S. cadmica, S. microstegia, S. pachystachys and S. verticillata were analyzed by GC/MS. The main compound were found to be as linoleic acid (18:2; 12.8 % to 52.2 %, linolenic acid (18:3; 3.2 % to 47.7 %, oleic acid (18:1; 11.3 % to 25.6 %, palmitic acid (16:0; 0.7 % to 16.8 % and stearic acid (18:0; 1.8 % to 4.8 %. A phylogenetic tree of species of Salvia were reported and compared to 18:3/18:2 ratio of the seed oils. Fatty acid composition of Salvia seed oils could be used as a chemotaxonomical marker.

  7. Natural radioactive trace elements and their occurrence in soil and in plants

    International Nuclear Information System (INIS)

    Valek, B.

    1974-01-01

    A brief survey is presented on the content of 40 K, 238 U, 232 Th, 206 Ra, 87 Rb, 208 Bi in certain soils in Czechoslovakia. Also presented is a survey of the 40 K level in some plants. The level of the trace elements in the soils, expressed in units of 10 -6 μCi/100 g soil, was ascertained as varying from 0.0271 to 0.04 for 206 Ra to up to 240 for 208 Bi. Novel data are also given on the content of 40 K in 13 meadow plants for which the level was ascertained to vary between 4,760 (Deschampsia caespitosa P. Beav.) and 17,126 (Ranunculus acer L.) in units of 10 -6 μCi/100 g ash. (L.O.)

  8. A Study of the Epiphytic Orchids in Jobolarangan Forest

    Directory of Open Access Journals (Sweden)

    ADIANI VIVIATI

    2001-07-01

    Full Text Available The objective of the research was to know the species of epiphytic orchids in Jobolarangan forest. The orchid samples were taken from all stand-plants. The plants were chosen randomly by considering the diversity and richness of orchids that attach on it. Each plant was sampled in three repetitions. Sampling of orchids existence in the plant’s stand were done using transect method through a zonation system. In this research 11 epiphytic-orchids such as Bulbophyllum bakhuizenii Stenn, Coelogyne miniata Lindl, Coelogyne rochussenii de Vr., Dendrobium bigibbum Lindl., Dendrobchilum longifolium, Eria bogoriensis, J.J.S. Liparis caespitosa (Thou. Lindl., Liparis pallida (Bl.. Pholidota globosa (Bl. Lindl., Polystachya flavescens (Bl. J.J.S., and Trichoglottis sp. were found. The host plant stand that was attached with most orchids was Schefflera fastigiata and Saurauia bracteosa, generally in zone three.

  9. Svensk Botanisk Tidskrift : Volym 77: Häfte 5, 1983

    OpenAIRE

    1983-01-01

    INNEHÅLLSFÖRTECKNING. O. ENGELMARK: Skogarna bränns i amerikanska nationalparker. K.-A. OLSSON: Pilgrimsveronika (Veronica peregrina) funnen i NÖ Skåne. Botanik från början: Öst är öst och väst är väst. I. ELVERS: Ultraviolettfotografering av blommor. B. WIDÉN och M. WIDÉN: Judasörat (Hirneola auricula-judae) i nordvästra Skåne. K. BOHLIN och M. JEPPSON: Frågor kring blåtryffeln, Chamonixia caespitosa. Hallingbäck/Holmåsens mossflora i starkare band. L. JERLING: Populationsdynamik hos gulkäm...

  10. Role of endosymbiotic zooxanthellae and coral mucus in the adhesion of the coral-bleaching pathogen Vibrio shiloi to its host.

    Science.gov (United States)

    Banin, E; Israely, T; Fine, M; Loya, Y; Rosenberg, E

    2001-05-15

    Vibrio shiloi, the causative agent of bleaching the coral Oculina patagonica in the Mediterranean Sea, adheres to its coral host by a beta-D-galactopyranoside-containing receptor on the coral surface. The receptor is present in the coral mucus, since V. shiloi adhered avidly to mucus-coated ELISA plates. Adhesion was inhibited by methyl-beta-D-galactopyranoside. Removal of the mucus from O. patagonica resulted in a delay in adhesion of V. shiloi to the coral, corresponding to regeneration of the mucus. DCMU inhibited the recovery of adhesion of the bacteria to the mucus-depleted corals, indicating that active photosynthesis by the endosymbiotic zooxanthellae was necessary for the synthesis or secretion of the receptor. Further evidence of the role of the zooxanthellae in producing the receptor came from a study of adhesion of V. shiloi to different species of corals. The bacteria failed to adhere to bleached corals and white (azooxanthellate) O. patagonica cave corals, both of which lacked the algae. In addition, V. shiloi adhered to two Mediterranean corals (Madracis and Cladocora) that contained zooxanthellae and did not adhere to two azooxanthellate Mediterranean corals (Phyllangia and Polycyathus). V. shiloi demonstrated positive chemotaxis towards the mucus of O. patagonica. The data demonstrate that endosymbiotic zooxanthellae contribute to the production of coral mucus and that V. shiloi infects only mucus-containing, zooxanthellate corals.

  11. Dormice and man: a review of past and present relations

    Directory of Open Access Journals (Sweden)

    Giuseppe Carpaneto

    1995-05-01

    Full Text Available Abstract The past and present relations between dormice (Myoxidae and man were reviewed through an interdisciplinary approach. All the data available from several fields of research have been assembled in order to consider the influence of human civilisation on dormice as well as the importance of these rodents in ancient and rural economies. A remarkable human impact on the geographical distribution of some dormouse species (Myoxus glis and Muscardinus avellanarius and their population density was suggested through an historical and biogeographical analysis, supported by paleontological data. An ethnozoological enquiry was carried out to describe the utilisation of dormice as food or medicine and the traditional hunting techniques, in Mediterranean and Afrotropical areas. An archaeozoological survey was attempted to describe the captive husbandry of dormice by the ancient Romans and to arrange an updated checklist of so called "gliraria". The role of dormice as pests in agroforestry and in the transmission of diseases is discussed together with perspectives on wildlife management and conservation. Riassunto I ghiri e l'uomo: relazioni antiche ed attuali - Le antiche ed attuali relazioni fra i Mioxidi e l'uomo vengono passate in rassegna attraverso un approccio interdisciplinare, mettendo insieme tutti i principali risultati di ricerche effettuate nei più diversi settori (sia biologici che umanistici. In questo modo si è potuto tracciare un quadro generale che tiene conto sia dell'influenza delle attività umane sulla distribuzione geografica ed ecologica delle diverse specie di Mioxidi che della loro importanza nelle civiltà antiche o rurali. Attraverso un'analisi storica e biogeografica, basata anche su dati paleontologici, si può ipotizzare una notevole influenza positiva dei popoli mediterranei sugli areali attuali di alcune specie (Myoxus glis and

  12. Checklist of the benthic marine and brackish Galician algae (NW Spain

    Directory of Open Access Journals (Sweden)

    Bárbara, Ignacio

    2005-06-01

    Full Text Available We present an annotated checklist of the benthic marine and brackish algae of the Galician coasts (Spain based on literature records and new collections. This checklist includes 618 species: 118 Cyanophyta, 296 Rhodophyta, 127 Ochrophyta, and 77 Chlorophyta. The number of specific, infraspecific taxa, and stages is 643: 121 Cyanophyta, 309 Rhodophyta, 135 Ochrophyta, and 79 Chlorophyta. Hyella caespitosa var. nitida, Calothrix fasciculata, Gracilariopsis longissima, Compsonema minutum, and Sphacelaria tribuloides are new records for Galicia, and there are also some new provincial records. We state the presence of each species for Lugo (Lu, A Coruña (Co, and Pontevedra (Po provinces. The number of species found in Galicia is high, since 85% of the species recorded for the warm-temperate NE Atlantic Ocean grow in Galicia. Biogeographical comments comparing the Galician data with the neighboring areas of Britain and Ireland, Basque coast, Portugal, southern Iberian Peninsula, Canary Islands and Atlantic coast of Morocco are given. Finally, we present lists of cold-temperate, warm-temperate, Lusitanic Province endemics, and alien species growing in Galicia.Se presenta una lista comentada de las especies de algas bentónicas marinas y salobres de la costa de Galicia (España basada en citas bibliográficas y nuevos datos de los autores. La lista contiene 618 especies: 118 Cyanophyta, 296 Rhodophyta, 127 Ochrophyta y 77 Chlorophyta. El número de taxa específicos e infraespecíficos asciende a 643: 121 Cyanophyta, 309 Rhodophyta, 135 Ochrophyta y 79 Chlorophyta. Hyella caespitosa var. nitida, Calothrix fasciculata, Gracilariopsis longissima, Compsonema minutum y Sphacelaria tribuloides son nuevas citas para Galicia, y algunas nuevas citas provinciales. Para cada especie se especifica su presencia en las provincias de Lugo (Lu, A Coruña (Co y Pontevedra (Po. El número de especies encontradas en Galicia es elevado, ya que se conocen el 85% de las

  13. Carotenoids from Haloarchaea and Their Potential in Biotechnology

    Science.gov (United States)

    Rodrigo-Baños, Montserrat; Garbayo, Inés; Vílchez, Carlos; Bonete, María José; Martínez-Espinosa, Rosa María

    2015-01-01

    The production of pigments by halophilic archaea has been analysed during the last half a century. The main reasons that sustains this research are: (i) many haloarchaeal species possess high carotenoids production availability; (ii) downstream processes related to carotenoid isolation from haloarchaea is relatively quick, easy and cheap; (iii) carotenoids production by haloarchaea can be improved by genetic modification or even by modifying several cultivation aspects such as nutrition, growth pH, temperature, etc.; (iv) carotenoids are needed to support plant and animal life and human well-being; and (v) carotenoids are compounds highly demanded by pharmaceutical, cosmetic and food markets. Several studies about carotenoid production by haloarchaea have been reported so far, most of them focused on pigments isolation or carotenoids production under different culture conditions. However, the understanding of carotenoid metabolism, regulation, and roles of carotenoid derivatives in this group of extreme microorganisms remains mostly unrevealed. The uses of those haloarchaeal pigments have also been poorly explored. This work summarises what has been described so far about carotenoids production by haloarchaea and their potential uses in biotechnology and biomedicine. In particular, new scientific evidence of improved carotenoid production by one of the better known haloarchaeon (Haloferax mediterranei) is also discussed. PMID:26308012

  14. Perchlorate and halophilic prokaryotes: implications for possible halophilic life on Mars.

    Science.gov (United States)

    Oren, Aharon; Elevi Bardavid, Rahel; Mana, Lily

    2014-01-01

    In view of the finding of perchlorate among the salts detected by the Phoenix Lander on Mars, we investigated the relationships of halophilic heterotrophic microorganisms (archaea of the family Halobacteriaceae and the bacterium Halomonas elongata) toward perchlorate. All strains tested grew well in NaCl-based media containing 0.4 M perchlorate, but at the highest perchlorate concentrations, tested cells were swollen or distorted. Some species (Haloferax mediterranei, Haloferax denitrificans, Haloferax gibbonsii, Haloarcula marismortui, Haloarcula vallismortis) could use perchlorate as an electron acceptor for anaerobic growth. Although perchlorate is highly oxidizing, its presence at a concentration of 0.2 M for up to 2 weeks did not negatively affect the ability of a yeast extract-based medium to support growth of the archaeon Halobacterium salinarum. These findings show that presence of perchlorate among the salts on Mars does not preclude the possibility of halophilic life. If indeed the liquid brines that may exist on Mars are inhabited by salt-requiring or salt-tolerant microorganisms similar to the halophiles on Earth, presence of perchlorate may even be stimulatory when it can serve as an electron acceptor for respiratory activity in the anaerobic Martian environment.

  15. Scaling up for the industrial production of rifamycin B; optimization of the process conditions in bench-scale fermentor

    Directory of Open Access Journals (Sweden)

    Hewaida F. El-Sedawy

    2013-06-01

    Full Text Available Optimization of fermentation process conditions using a gene amplified variant of Amycolatopsis mediterranei (NCH was carried out. The use of aeration level 1.5 vvm increased the yield by 16.6% (from 13.81 to 16.1 g/l upon controlling the temperature at 28 °C. Adjustment of the aeration level at 1.5 vvm for 3 days then controlling the dissolved oxygen (DO at 30% saturation further increased the yield to 17.8 g/l. The optimum pH was 6.5 for 3 days then 7 thereafter when a production yield of 16.1 g/l was recorded using an aeration rate of 1.5 vvm. Controlling the pH at constant value (6.5 or 7 all through the fermentation process decreased the yield by 5–21%. Controlling the temperature at 30 °C for 3 days then 28 °C thereafter slightly increased the yield by 5% upon using an aeration rate of 1 vvm while it decreased upon using an aeration rate of 1.5 vvm. Integration of the most optimum conditions increased the production yield by 22% from 13.81 to 17.8 g/l.

  16. PREVALENCE AND IDENTIFICATION OF VIBRIO SPP. ISOLATED ON AQUACULTURED GILTHEAD SEA BREAM

    Directory of Open Access Journals (Sweden)

    C. Scarano

    2011-01-01

    Full Text Available The aim of the study was to investigate the prevalence of Vibrio spp isolated from gilthead sea bream (Sparus aurata farmed on sea cages and to identify and characterize the pathogen by molecular techniques. Eighty fish were collected from two hatcheries located on the North-Est Sardinian Mediterranean coast, and microbiological analysis were performed on different body parts such as skin, gills, muscle and intestinal tract. Subsequently 100 pure colonies with typical morphology and phenotypic characteristics were selected and submitted to the molecular identification. The analysis on the prevalence of Vibrio spp showed the effect of the hatchery rearing system (P<0.001, of the date of sampling (P<0.001, and of the body part (P<0.001. All the strains selected were confirmed to be members of the genus Vibrio spp by the molecular method/techinique/identification, whereas the rpoA gene sequence analyses allowed to identify 89 strains belonging to the species Vibrio harveyi, 6 to V. diabolicus, 2 to V. parahaemolyticus and 1 to V. mediterranei.

  17. Carotenoids from Haloarchaea and Their Potential in Biotechnology.

    Science.gov (United States)

    Rodrigo-Baños, Montserrat; Garbayo, Inés; Vílchez, Carlos; Bonete, María José; Martínez-Espinosa, Rosa María

    2015-08-25

    The production of pigments by halophilic archaea has been analysed during the last half a century. The main reasons that sustains this research are: (i) many haloarchaeal species possess high carotenoids production availability; (ii) downstream processes related to carotenoid isolation from haloarchaea is relatively quick, easy and cheap; (iii) carotenoids production by haloarchaea can be improved by genetic modification or even by modifying several cultivation aspects such as nutrition, growth pH, temperature, etc.; (iv) carotenoids are needed to support plant and animal life and human well-being; and (v) carotenoids are compounds highly demanded by pharmaceutical, cosmetic and food markets. Several studies about carotenoid production by haloarchaea have been reported so far, most of them focused on pigments isolation or carotenoids production under different culture conditions. However, the understanding of carotenoid metabolism, regulation, and roles of carotenoid derivatives in this group of extreme microorganisms remains mostly unrevealed. The uses of those haloarchaeal pigments have also been poorly explored. This work summarises what has been described so far about carotenoids production by haloarchaea and their potential uses in biotechnology and biomedicine. In particular, new scientific evidence of improved carotenoid production by one of the better known haloarchaeon (Haloferax mediterranei) is also discussed.

  18. Relative tolerance of a range of Australian native plant species and lettuce to copper, zinc, cadmium, and lead.

    Science.gov (United States)

    Lamb, Dane T; Ming, Hui; Megharaj, Mallavarapu; Naidu, Ravi

    2010-10-01

    The tolerance of wild flora to heavy-metal exposure has received very little research. In this study, the tolerance of four native tree species, four native grass species, and lettuce to copper (Cu), zinc (Zn), cadmium (Cd), and lead (Pb) was investigated in a root-elongation study using Petri dishes. The results of these studies show a diverse range of responses to Cu, Zn, Cd, and Pb amongst the tested plant species. Toxicity among metals decreased in the following order: Cd ~ Cu > Pb > Zn. Metal concentrations resulting in a 50% reduction in growth (EC(50)) varied considerably, ranging from (microM) 30 (Dichanthium sericeum) to >2000 (Acacia spp.) for Cu; from 260 (Lactuca sativa) to 2000 (Acacia spp.) for Zn; from 27 (L. sativa) to 940 (Acacia holosericea) for Cd; and from 180 (L. sativa) to >1000 (Acacia spp.) for Pb. Sensitive native plant species identified included D. sericeum, Casuarina cunninghamiana, and Austrodanthonia caespitosa. However, L. sativa (lettuce) was also among the most sensitive to all four metals. Acacia species showed a high tolerance to metal exposure, suggesting that the Acacia genus shows potential for use in contaminated-site revegetation.

  19. [A Cellular Automata Model for a Community Comprising Two Plant Species of Different Growth Forms].

    Science.gov (United States)

    Frolov, P V; Zubkova, E V; Komarov, A S

    2015-01-01

    A cellular automata computer model for the interactions between two plant species of different growth forms--the lime hairgrass Deschampsia caespitosa (L.) P. Beauv., a sod cereal, and the moneywort Lysimachia nummularia L., a ground creeping perennial herb--is considered. Computer experiments on the self-maintenance of the populations of each species against the background of a gradual increase in the share of randomly eliminated individuals, coexistence of the populations of two species, and the effect of the phytogenous field have been conducted. As has been shown, all the studied factors determine the number of individuals and self-sustainability of the simulated populations by the degree of their impact. The limits of action have been determined for individual factors; within these limits, the specific features in plant reproduction and dispersal provide sustainable coexistence of the simulated populations. It has been demonstrated that the constructed model allows for studying the long-term developmental dynamics of the plants belonging to the selected growth forms.

  20. Morphological study of the genus Herposiphonia (Rhodophyta, Rhodomelaceae) on the coast of eastern Guangdong, China, with a description of H. pinnata sp. nov.

    Science.gov (United States)

    Ding, Lanping; Tan, Huaqiang; Zhang, Quanliang; Zeng, Lingzhao; Huang, Bingxin

    2016-03-01

    We present a taxonomic study of taxa of the red algae genus Herposiphonia (Rhodophyta, Rhodomelaceae), collected from the coast of eastern Guangdong, China. We made detailed morphological studies and considered recent taxonomic criteria for species delimitation, and are making the first report of five different species on the coast of Guangdong, including a new species. The species identified were H. caespitosa Tseng, H. hollenbergii Dawson, H. pecten - veneris (Harvey) Falkenberg, H. subdisticha Okamura and H. pinnata Ding and Tan sp. nov. H. pinnata sp. nov. is characterized by bright green thalli; most parts of the feathery thalli are free of the substratum; determinate branches and indeterminate branches are arranged in a chaotic sequence; the primary axis has bare segments; the determinate branch has 9-11 periaxial cells per segment; vegetative trichoblasts are abundant; and tetrasporangia are formed on the middle of the determinate branch with 1-8 successive segments in a single rectilinear series. This paper is also the first record of sporophyte plants of H. pecten-veneris.

  1. Stomatal responses to flooding of the intercellular air spaces suggest a vapor-phase signal between the mesophyll and the guard cells.

    Science.gov (United States)

    Sibbernsen, Erik; Mott, Keith A

    2010-07-01

    Flooding the intercellular air spaces of leaves with water was shown to cause rapid closure of stomata in Tradescantia pallida, Lactuca serriola, Helianthus annuus, and Oenothera caespitosa. The response occurred when water was injected into the intercellular spaces, vacuum infiltrated into the intercellular spaces, or forced into the intercellular spaces by pressurizing the xylem. Injecting 50 mm KCl or silicone oil into the intercellular spaces also caused stomata to close, but the response was slower than with distilled water. Epidermis-mesophyll grafts for T. pallida were created by placing the epidermis of one leaf onto the exposed mesophyll of another leaf. Stomata in these grafts opened under light but closed rapidly when water was allowed to wick between epidermis and the mesophyll. When epidermis-mesophyll grafts were constructed with a thin hydrophobic filter between the mesophyll and epidermis stomata responded normally to light and CO(2). These data, when taken together, suggest that the effect of water on stomata is caused partly by dilution of K(+) in the guard cell and partly by the existence of a vapor-phase signal that originates in the mesophyll and causes stomata to open in the light.

  2. Stomatal Responses to Flooding of the Intercellular Air Spaces Suggest a Vapor-Phase Signal Between the Mesophyll and the Guard Cells1[OA

    Science.gov (United States)

    Sibbernsen, Erik; Mott, Keith A.

    2010-01-01

    Flooding the intercellular air spaces of leaves with water was shown to cause rapid closure of stomata in Tradescantia pallida, Lactuca serriola, Helianthus annuus, and Oenothera caespitosa. The response occurred when water was injected into the intercellular spaces, vacuum infiltrated into the intercellular spaces, or forced into the intercellular spaces by pressurizing the xylem. Injecting 50 mm KCl or silicone oil into the intercellular spaces also caused stomata to close, but the response was slower than with distilled water. Epidermis-mesophyll grafts for T. pallida were created by placing the epidermis of one leaf onto the exposed mesophyll of another leaf. Stomata in these grafts opened under light but closed rapidly when water was allowed to wick between epidermis and the mesophyll. When epidermis-mesophyll grafts were constructed with a thin hydrophobic filter between the mesophyll and epidermis stomata responded normally to light and CO2. These data, when taken together, suggest that the effect of water on stomata is caused partly by dilution of K+ in the guard cell and partly by the existence of a vapor-phase signal that originates in the mesophyll and causes stomata to open in the light. PMID:20472750

  3. Unravelling anisogamy: egg size and ejaculate size mediate selection on morphology in free-swimming sperm.

    Science.gov (United States)

    Monro, Keyne; Marshall, Dustin J

    2016-07-13

    Gamete dimorphism (anisogamy) defines the sexes in most multicellular organisms. Theoretical explanations for its maintenance usually emphasize the size-related selection pressures of sperm competition and zygote survival, assuming that fertilization of all eggs precludes selection for phenotypes that enhance fertility. In external fertilizers, however, fertilization is often incomplete due to sperm limitation, and the risk of polyspermy weakens the advantage of high sperm numbers that is predicted to limit sperm size, allowing alternative selection pressures to target free-swimming sperm. We asked whether egg size and ejaculate size mediate selection on the free-swimming sperm of Galeolaria caespitosa, a marine tubeworm with external fertilization, by comparing relationships between sperm morphology and male fertility across manipulations of egg size and sperm density. Our results suggest that selection pressures exerted by these factors may aid the maintenance of anisogamy in external fertilizers by limiting the adaptive value of larger sperm in the absence of competition. In doing so, our study offers a more complete explanation for the stability of anisogamy across the range of sperm environments typical of this mating system and identifies new potential for the sexes to coevolve via mutual selection pressures exerted by gametes at fertilization. © 2016 The Author(s).

  4. A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus

    Directory of Open Access Journals (Sweden)

    Biao Tang

    2016-09-01

    Full Text Available The complete genome of methanol-utilizing Amycolatopsis methanolica strain 239T was generated, revealing a single 7,237,391 nucleotide circular chromosome with 7074 annotated protein-coding sequences (CDSs. Comparative analyses against the complete genome sequences of Amycolatopsis japonica strain MG417-CF17T, Amycolatopsis mediterranei strain U32 and Amycolatopsis orientalis strain HCCB10007 revealed a broad spectrum of genomic structures, including various genome sizes, core/quasi-core/non-core configurations and different kinds of episomes. Although polyketide synthase gene clusters were absent from the A. methanolica genome, 12 gene clusters related to the biosynthesis of other specialized (secondary metabolites were identified. Complete pathways attributable to the facultative methylotrophic physiology of A. methanolica strain 239T, including both the mdo/mscR encoded methanol oxidation and the hps/hpi encoded formaldehyde assimilation via the ribulose monophosphate cycle, were identified together with evidence that the latter might be the result of horizontal gene transfer. Phylogenetic analyses based on 16S rDNA or orthologues of AMETH_3452, a novel actinobacterial class-specific conserved gene against 62 or 18 Amycolatopsis type strains, respectively, revealed three major phyletic lineages, namely the mesophilic or moderately thermophilic A. orientalis subclade (AOS, the mesophilic Amycolatopsis taiwanensis subclade (ATS and the thermophilic A. methanolica subclade (AMS. The distinct growth temperatures of members of the subclades correlated with corresponding genetic variations in their encoded compatible solutes. This study shows the value of integrating conventional taxonomic with whole genome sequence data.

  5. Stoichiometric and kinetic analysis of extreme halophilic Archaea on various substrates in a corrosion resistant bioreactor.

    Science.gov (United States)

    Lorantfy, Bettina; Seyer, Bernhard; Herwig, Christoph

    2014-01-25

    Extreme halophilic Archaea are extremophile species which can thrive in hypersaline environments of up to 3-5 M sodium chloride concentration. Although their ecology and physiology are widely identified on the microbiological level, little emphasis has been laid on quantitative bioprocess development with extreme halophiles. The goal of this study was to establish, on the one hand, a methodological basis for quantitative bioprocess analysis of extreme halophilic Archaea with an extreme halophilic strain as an example. Firstly, as a novel usage, a corrosion resistant bioreactor setup for extreme halophiles has been implemented. Then, paying special attention to total bioprocess quantification approaches, an indirect method for biomass quantification using on-line process signals was introduced. Subsequently, robust quantitative data evaluation methods for halophiles could be developed, providing defined and controlled cultivation conditions in the bioreactor and therefore obtaining suitable quality of on-line as well as off-line datasets. On the other hand, new physiological results of extreme halophiles in bioreactor have also been obtained based on the quantitative methodological tools. For the first time, quantitative data on stoichiometry and kinetics were collected and evaluated on different carbon sources. The results on various substrates were interpreted, with proposed metabolic mechanisms, by linking to the reported primary carbon metabolism of extreme halophilic Archaea. Moreover, results of chemostat cultures demonstrated that extreme halophilic organisms show Monod-kinetics on different sole carbon sources. A diauxic growth pattern was described on a mixture of substrates in batch cultivations. In addition, the methodologies presented here enable one to characterize the utilized strain Haloferax mediterranei (HFX) as a potential new host organism. Thus, this study offers a strong methodological basis as well as a fundamental physiological assessment for

  6. Genomic diversity of vibrios associated with the Brazilian coral Mussismilia hispida and its sympatric zoanthids (Palythoa caribaeorum, Palythoa variabilis and Zoanthus solanderi).

    Science.gov (United States)

    Chimetto, L A; Brocchi, M; Gondo, M; Thompson, C C; Gomez-Gil, B; Thompson, F L

    2009-06-01

    A taxonomic survey of the vibrios associated with the Brazilian endemic coral Mussismilia hispida and the sympatric zoanthids (i.e. Palythoa caribaeorum, Palythoa variabilis and Zoanthus solanderi). Mucus of 54 cnidarian specimens collected in three different places at São Sebastião in two consecutive years (i.e. 2005 and 2006) was used for taxonomic characterization of the cnidarian microbiota. Ninety-eight of the 151 vibrio isolates fell within the vibrio core group according to partial 16S rDNA sequences. We performed the sequencing of recA and pyrH genes of all vibrio isolates. The most abundant taxa belonged to the vibrio core group (Vibrio harveyi, Vibrio rotiferianus, Vibrio campbellii and Vibrio alginolyticus), Vibrio mediterranei (=Vibrio shillonii) and Vibrio chagasii. With the exception of V. chagasii which was found only in the mucus of M. hispida, the other species appeared in different hosts with no evidence for the presence of host-specific clones or species. Using rep-PCR analysis, we observed a high genomic heterogeneity within the vibrios. Each vibrio isolate generated a different rep-PCR fingerprint pattern. There was a complete agreement between the grouping based on rep-PCR and concatenated sequences of pyrH, recA and 16S rDNA, but the pyrH gene has the highest discriminatory power for vibrio species identification. The vibrio core group is dominant in the mucus of these cnidarians. There is a tremendous diversity of vibrio lineages within the coral mucus. pyrH gene sequences permit a clear-cut identification of vibrios. The taxonomic resolution provided by pyrH (but not recA) appears to be enough for identifying species of vibrios and for disclosing putative new taxa. The vibrio core group appears to be dominant in the mucus of the Brazilian cnidarians. The overrepresentation of these vibrios may reflect as yet unknown ecological functions in the coral holobiont.

  7. The Impact of Different Habitat Conditions on the Variability of Wild Populations of a Medicinal Plant Betonica officinalis L.

    Directory of Open Access Journals (Sweden)

    Kinga Kostrakiewicz-Gierałt

    2015-06-01

    Full Text Available Plants are important source of beneficial bioactive compounds which may find various applications as functional ingredients, such as components of food supplements, cosmetics, and pharmaceuticals. One such medicinal plant is Betonica officinalis, populations of which were investigated in 2012‒13. The studies were conducted in patches of Molinietum caeruleae dominated by: small meadow taxa (patch I; the shrub willow Salix repens ssp. rosmarinifolia (patch II; large tussock grasses Deschampsia caespitosa and Molinia caerulaea (patch III; tall-growing macroforbs Filipendula ulmaria and Solidago canadensis (patch IV. Over successive patches, the average height of plant cover increased, as did soil moisture, while light availability at ground level decreased. Much greater abundance and density of the Betonica officinalis population were found in patches I, III and IV, while lower values for these parameters were noted in patch II. Individuals in pre-reproductive stages were absent during whole study period in all study plots, vegetative ramet clusters were observed in plots situated in patches I and III in the first year of observations, while only generative ramet clusters occurred in plots set in patches II and IV. The number of rosettes per ramet cluster, number and dimensions of rosette leaves, height of flowering stems, number of cauline leaves, length of inflorescences, as well as number and length of flowers increased gradually over successive patches, whereas the number of generative stems per ramet cluster did not differ remarkably among populations. On the basis of the performed studies it might be concluded that the condition of populations deteriorated from patches overgrown by large-tussock grasses and characterized by considerable share of native and alien tall-growing macroforbs, via patch dominated by small meadow taxa, to patch prevailed by shrub willows.

  8. Life-history trait of the Mediterranean keystone species Patella rustica: growth and microbial bioerosion

    Directory of Open Access Journals (Sweden)

    I. PRUSINA

    2015-05-01

    Full Text Available The age and shell growth patterns in populations of Patella rustica of the Adriatic Sea were determined by analyzing the inner growth lines visible in shell sections. Marginal increment analysis showed annual periodicity with annual growth line being deposited in May. The growth analysis of 120 individual shells showed that 90.8 % of collected individuals were less than 4 years of age and only two individuals (1.6 % were older than 6 years. Population structure was described and the generalized von Bertalanffy growth parameters were calculated: asymptotic length (L∞ was 38.22 mm and the growth constant (K was 0.30 year-1. Growth performance index value of P. rustica (Ø’ was 2.64 and is among the lowest ranges reported for limpet species. Patella rustica shells were degraded to different degrees by microbial bioerosion. Microboring organisms identified were pseudofilamentous and filamentous cyanobacteria Hormathonema paulocellulare, Hyella caespitosa, Mastigocoleus testarum and Leptolyngbya sp. The overall intensity of infestation was relatively low, but increased in severity with shell length. The damage was most often restricted to the oldest parts of the shell, i.e. apex of the shell, posing difficulties in determining the exact position of the first growth line. The present study is first to introduce the use of inner growth lines in Patella rustica shell sections as a reliable method for age determination and it provides the first insight into the growth patterns of this keystone species while taking the interference of microbial shell bioerosion in consideration.

  9. Long-term decline of the populations of Fucales (Cystoseira spp. and Sargassum spp.) in the Albères coast (France, North-western Mediterranean).

    Science.gov (United States)

    Thibaut, Thierry; Pinedo, Susana; Torras, Xavier; Ballesteros, Enric

    2005-12-01

    Only five of fourteen species of Fucales reported at the end of the XIXth century are currently present in the Albères Coast (France, NW Mediterranean). According to historical data there has been a steady decrease of all the populations since the 1940s. Seven taxa now extinct (Cystoseira crinita, Cystoseira barbata, Cystoseira foeniculacea f. tenuiramosa, Cystoseira spinosa, Cystoseira spinosa var. compressa, Sargassum hornschuchii and Sargassum vulgare) were considered frequent and some of them were the dominant and engineering species in several phytobenthic assemblages. Moreover, only one of the five species left, shows no signs of regression (Cystoseira compressa), two are considered as rare (Cystoseira caespitosa, Cystoseira zosteroides), and one is very rare (Cystoseira elegans). Cystoseira mediterranea, a species that was reported to make a continuous belt along the shores of the Albères coast, has almost disappeared from some areas. Overgrazing by sea urchins, outcompetition by mussels, habitat destruction, scientific research sampling and, probably, human trampling and chemical pollution are to be blamed for the decline of populations thriving in shallow waters. Deep-water species have been affected by an increase in water turbidity and, probably, chemical pollution and direct plant destruction attributed to net fishing. If degradation of the environmental conditions continues, the remaining Cystoseira species will face a most unwelcome prospect. Even after the removal of the causes that led to its die-off, natural restoration of extinct species seems not to be possible because the decline has also affected populations from nearby areas and zygotes are unable to disperse over long distances. Urgent management actions have to be designed in order to improve the current situation of the populations of Fucales in the Albères coast.

  10. Seasonality of the late Pleistocene Dawson tephra and exceptional preservation of a buried riparian surface in central Yukon Territory, Canada

    Science.gov (United States)

    Froese, Duane G.; Zazula, Grant D.; Reyes, Alberto V.

    2006-07-01

    The late Pleistocene Dawson tephra was deposited by one of the largest Quaternary eruptions in northwestern North America. Its distribution is known sparsely from sites near the source area in southwestern Alaska and central Yukon Territory, where more than 20 occurrences are documented in the Klondike region. Dawson tephra erupted about 25,300C yr BP, near the onset of the last glaciation, and provides a stratigraphic marker across Eastern Beringia. We report radiocarbon ages, paleobotanical data, and cryostratigraphic observations from a new Dawson tephra locale at Goldbottom Creek, in the Klondike region of Yukon Territory, which collectively indicate that the eruption occurred in the late winter or early spring. Multiple, fining-upward tephra-rich ice beds are interpreted as remnants of surface icings, which presently are common in the region during spring. A buried in situ riparian meadow, preserved below the icing and tephra, consists of abundant tufted hair grass ( Deschampsia caespitosa), with interspersed horsetails ( Equisetum cf. palustre) and mosses. Detrital plant remains and preserved in situ grass inflorescences entombed in the icing had expelled their fruits, consistent with a late season surface when the icing was active. The extraordinary thickness of Dawson tephra in central Yukon likely reflects reworking of a winter-deposited tephra by snow melt in the spring following the eruption, indicating that the primary thickness may be overestimated at valley-bottom sites. Winter deposition of the tephra may have, in part, minimized the terrestrial ecological impacts of the eruption on zonal "steppe-tundra" vegetation through the retransportation of tephra from hillslopes to the riparian areas, where the tephra became incorporated into local fluvial systems.

  11. Does egg competition occur in marine broadcast-spawners?

    Science.gov (United States)

    Marshall, D J; Evans, J P

    2005-09-01

    When the availability of sperm limits female reproductive success, competition for sperm, may be an important broker of sexual selection. This is because sperm limitation can increase the variance in female reproductive success, resulting in strong selection on females to compete for limited fertilization opportunities. Sperm limitation is probably common in broadcast-spawning marine invertebrates, making these excellent candidates for investigating scramble competition between broods of eggs and its consequences for female reproductive success. Here, we report our findings from a series of experiments that investigate egg competition in the sessile, broadcast-spawning polychaete Galeolaria caespitosa. We initially tested whether the order in which eggs encounter sperm affects their fertilization success at two ecologically relevant current regimes. We used a split-clutch-split--ejaculate technique to compare the fertilization success of eggs from individual females that had either first access (competition-free treatment) or second access (egg competition treatment) to a batch of sperm. We found that fertilization success depended on the order in which eggs accessed sperm; eggs that were assigned to the competition-free treatment exhibited significantly higher fertilization rates than those assigned to the egg competition treatment at both current speeds. In subsequent experiments we found that prior exposure of sperm to eggs significantly reduced both the quantity and quality of sperm available to fertilize a second clutch of eggs, resulting in reductions in fertilization success at high and low sperm concentrations. These findings suggest that female traits that increase the likelihood of sperm-egg interactions (e.g. egg size) will respond to selection imposed by egg competition.

  12. Disturbance-mediated facilitation by an intertidal ecosystem engineer.

    Science.gov (United States)

    Wright, Jeffrey T; Gribben, Paul E

    2017-09-01

    Ecosystem engineers facilitate communities by providing a structural habitat that reduces abiotic stress or predation pressure for associated species. However, disturbance may damage or move the engineer to a more stressful environment, possibly increasing the importance of facilitation for associated communities. In this study, we determined how disturbance to intertidal boulders (i.e., flipping) and the subsequent movement of a structural ecosystem engineer, the tube-forming serpulid worm Galeolaria caespitosa, from the bottom (natural state, low abiotic stress) to the top (disturbed state, high abiotic stress) surface of boulders influenced the importance of facilitation for intertidal communities across two intertidal zones. Theory predicts stronger relative facilitation should occur in the harsher environments of the top of boulders and the high intertidal zone. To test this prediction, we experimentally positioned boulders with the serpulids either face up or face down for 12 months in low and high zones in an intertidal boulder field. There were very different communities associated with the different boulders and serpulids had the strongest facilitative effects on the more stressful top surface of boulders with approximately double the species richness compared to boulders lacking serpulids. Moreover, within the serpulid matrix itself there was also approximately double the species richness (both zones) and abundance (high zone only) of small invertebrates on the top of boulders compared to the bottom. The high relative facilitation on the top of boulders reflected a large reduction in temperature by the serpulid matrix on that surface (up to 10°C) highlighting a key role for modification of the abiotic environment in determining the community-wide facilitation. This study has demonstrated that disturbance and subsequent movement of an ecosystem engineer to a more stressful environment increased the importance of facilitation and allowed species to

  13. Vibrio spp. ISOLATED FROM SHRIMPS AND WATER FROM A MARINE FARM IN PERNAMBUCO, BRAZIL Víbrios en el agua y en las gambas del mar (Litopenaeus vannamei, Boone, 1931 cultivado en Pernambuco Vibrio spp. ISOLADOS DE CAMARÃO E ÁGUA DE CULTIVO DE FAZENDA MARINHA EM PERNAMBUCO

    Directory of Open Access Journals (Sweden)

    Carlos André Bezerra Alves

    2009-12-01

    Full Text Available

    Water and shrimp samples were collected monthly, during all cultivation phases, in three located farms at Pernambuco coast, on winter and summer, for Vibrio spp. quantification and identification. The counting’s were correlated, through mathematical models (P<0.05, with the variables season, water biochemical parameters, wet mount, histopathology exam, toxins presence and handling techniques used. Just the variable cultivation time interfered at total counting of Vibrio spp. in all samples were obtained countings that varied 0.1x 10 to 6.2 x 103 UFC/mL in water, of 7.0 x 10 to 8.2 x 105 UFC/g in powder-larva, of 1.1 x 10 to 1.1 x 105 UFC/mL in hemolymph and of 2.5 x 102 to 1.1 x 106UFC/g in hepatopancreas. The species V. mediterranei (1%, V. mimicus (1.25%, V. fischeri (4.25%, V. cincinnatiensis (4.25%, V. metschnikovii (4.25%, V. proteolyticus (5.5%, V. harveyi (5.5%, V. hollisae (5.5%, V. carchariae (7%, V. vulnificus (8.5%, V. damsela (8.5%, V. parahaemolyticus (13%, V. fluvialis (15%, V. anguillarum (16.5% were identified. It is concluded that the Vibrionaceae load increases proportionally with cultivation time, due to the organic matter increment, what can turn the susceptible animals to the infection for vibrios.

    KEY WORD: Vibrionaceae, Vibrio spp., shrimp and pond water.
    El agua y muestras de la gamba eran la publicación mensual reunido, durante todas las fases del cultivo, en tres granjas localizadas a la costa de Pernambuco, en invierno y verano, para la cuantificación e identificación el de Vibrio spp.. El contando fueron puestos en correlación, a través de los modelos matemáticos (P <0,05, con la estación de las variables, agua que los parámetros bioquímicos, montaña mojada, examen del histopatologia, presencia de las toxinas y técnicas manejando usaron. Simplemente el tiempo del cultivo inconstante interfirió a total que

  14. Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae.

    Science.gov (United States)

    Al-Saari, Nurhidayu; Gao, Feng; Rohul, Amin A K M; Sato, Kazumichi; Sato, Keisuke; Mino, Sayaka; Suda, Wataru; Oshima, Kenshiro; Hattori, Masahira; Ohkuma, Moriya; Meirelles, Pedro M; Thompson, Fabiano L; Thompson, Cristiane; Filho, Gilberto M A; Gomez-Gil, Bruno; Sawabe, Toko; Sawabe, Tomoo

    2015-01-01

    5085T, V. hangzhouensis JCM 15146T V. maritimus LMG 25439T, and V. variabilis LMG 25438T). In silico DDH data also supported the genomic relationship. The strains C7T also had less than 95% average amino acid identity (AAI) and average nucleotide identity (ANI) towards V. maritimus C210, V. variabilis C206, and V. mediterranei AK1T, V. brasiliensis LMG 20546T, V. orientalis ATCC 33934T, and V. sinaloensis DSM 21326. The name Vibrio astriarenae sp. nov. is proposed with C7 as the type strains. Both V. agarivorans CECT 5058T and V. astriarenae C7T are members of the newest clade of Vibrionaceae named Agarivorans.

  15. Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae.

    Directory of Open Access Journals (Sweden)

    Nurhidayu Al-Saari

    . agarivorans CECT 5085T, V. hangzhouensis JCM 15146T V. maritimus LMG 25439T, and V. variabilis LMG 25438T. In silico DDH data also supported the genomic relationship. The strains C7T also had less than 95% average amino acid identity (AAI and average nucleotide identity (ANI towards V. maritimus C210, V. variabilis C206, and V. mediterranei AK1T, V. brasiliensis LMG 20546T, V. orientalis ATCC 33934T, and V. sinaloensis DSM 21326. The name Vibrio astriarenae sp. nov. is proposed with C7 as the type strains. Both V. agarivorans CECT 5058T and V. astriarenae C7T are members of the newest clade of Vibrionaceae named Agarivorans.

  16. Identification of invasive and expansive plant species based on airborne hyperspectral and ALS data

    Science.gov (United States)

    Szporak-Wasilewska, Sylwia; Kuc, Gabriela; Jóźwiak, Jacek; Demarchi, Luca; Chormański, Jarosław; Marcinkowska-Ochtyra, Adriana; Ochtyra, Adrian; Jarocińska, Anna; Sabat, Anita; Zagajewski, Bogdan; Tokarska-Guzik, Barbara; Bzdęga, Katarzyna; Pasierbiński, Andrzej; Fojcik, Barbara; Jędrzejczyk-Korycińska, Monika; Kopeć, Dominik; Wylazłowska, Justyna; Woziwoda, Beata; Michalska-Hejduk, Dorota; Halladin-Dąbrowska, Anna

    2017-04-01

    . Simultaneously to airborne data acquisitions also botanical surveys were performed covering in total 5680 reference plots for 18 alien invasive and native expansive plant species (1886 in first flight campaign, 1907 in second and 1887 in third). The collected data were used to identify species characteristics such as spectral properties among others (percentage cover, growth stage, discoloration, coexisting species, land use, plant litter). The research includes 10 invasive alien species and 8 native expansive plant species. Amongst plant species selected for the purposes of this study were: Robinia pseudoacacia, Padus serotina, Rumex confertus, Erigeron annuus, Spiraea tomentosa, Solidago spp., Lupinus polyphyllus, Reynoutria spp., Echinocystis lobata and Heracleum spp. as alien invasive species, and Urtica dioica, Filipendula ulmaria, Phragmites australis, Rubus spp, Calamagrostis epigejos, Cirsium arvense, Molinia caerulea, Deschampsia caespitosa as native expansive species. In this study we present the methodology used for identification of invasive alien and expansive native plant species using hyperspectral and airborne laser data with resulting accuracies using different classification methods and exemplary distribution maps. The research within this study will be continued during growing season of the year 2017. Acknowledgements This research has been carried out under the Biostrateg Programme of the Polish National Centre for Research and Development (NCBiR), project No.: DZP/BIOSTRATEG-II/390/2015: The innovative approach supporting monitoring of non-forest Natura 2000 habitats, using remote sensing methods (HabitARS).