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Sample records for matlab based gui

  1. MatchGUI: A Graphical MATLAB-Based Tool for Automatic Image Co-Registration

    Science.gov (United States)

    Ansar, Adnan I.

    2011-01-01

    MatchGUI software, based on MATLAB, automatically matches two images and displays the match result by superimposing one image on the other. A slider bar allows focus to shift between the two images. There are tools for zoom, auto-crop to overlap region, and basic image markup. Given a pair of ortho-rectified images (focused primarily on Mars orbital imagery for now), this software automatically co-registers the imagery so that corresponding image pixels are aligned. MatchGUI requires minimal user input, and performs a registration over scale and inplane rotation fully automatically

  2. Nuclear grade cable thermal life model by time temperature superposition algorithm based on Matlab GUI

    International Nuclear Information System (INIS)

    Lu Yanyun; Gu Shenjie; Lou Tianyang

    2014-01-01

    Background: As nuclear grade cable must endure harsh environment within design life, it is critical to predict cable thermal life accurately owing to thermal aging, which is one of dominant factors of aging mechanism. Purpose: Using time temperature superposition (TTS) method, the aim is to construct nuclear grade cable thermal life model, predict cable residual life and develop life model interactive interface under Matlab GUI. Methods: According to TTS, nuclear grade cable thermal life model can be constructed by shifting data groups at various temperatures to preset reference temperature with translation factor which is determined by non linear programming optimization. Interactive interface of cable thermal life model developed under Matlab GUI consists of superposition mode and standard mode which include features such as optimization of translation factor, calculation of activation energy, construction of thermal aging curve and analysis of aging mechanism., Results: With calculation result comparison between superposition and standard method, the result with TTS has better accuracy than that with standard method. Furthermore, confidence level of nuclear grade cable thermal life with TTS is higher than that with standard method. Conclusion: The results show that TTS methodology is applicable to thermal life prediction of nuclear grade cable. Interactive Interface under Matlab GUI achieves anticipated functionalities. (authors)

  3. Updates to FuncLab, a Matlab based GUI for handling receiver functions

    Science.gov (United States)

    Porritt, Robert W.; Miller, Meghan S.

    2018-02-01

    Receiver functions are a versatile tool commonly used in seismic imaging. Depending on how they are processed, they can be used to image discontinuity structure within the crust or mantle or they can be inverted for seismic velocity either directly or jointly with complementary datasets. However, modern studies generally require large datasets which can be challenging to handle; therefore, FuncLab was originally written as an interactive Matlab GUI to assist in handling these large datasets. This software uses a project database to allow interactive trace editing, data visualization, H-κ stacking for crustal thickness and Vp/Vs ratio, and common conversion point stacking while minimizing computational costs. Since its initial release, significant advances have been made in the implementation of web services and changes in the underlying Matlab platform have necessitated a significant revision to the software. Here, we present revisions to the software, including new features such as data downloading via irisFetch.m, receiver function calculations via processRFmatlab, on-the-fly cross-section tools, interface picking, and more. In the descriptions of the tools, we present its application to a test dataset in Michigan, Wisconsin, and neighboring areas following the passage of USArray Transportable Array. The software is made available online at https://robporritt.wordpress.com/software.

  4. Matlab GUI for a Fluid Mixer

    Science.gov (United States)

    Barbieri, Enrique

    2005-01-01

    The Test and Engineering Directorate at NASA John C. Stennis Space Center developed an interest to study the modeling, evaluation, and control of a liquid hydrogen (LH2) and gas hydrogen (GH2) mixer subsystem of a ground test facility. This facility carries out comprehensive ground-based testing and certification of liquid rocket engines including the Space Shuttle Main engine. A software simulation environment developed in MATLAB/SIMULINK (M/S) will allow NASA engineers to test rocket engine systems at relatively no cost. In the progress report submitted in February 2004, we described the development of two foundation programs, a reverse look-up application using various interpolation algorithms, a variety of search and return methods, and self-checking methods to reduce the error in returned search results to increase the functionality of the program. The results showed that these efforts were successful. To transfer this technology to engineers who are not familiar with the M/S environment, a four-module GUI was implemented allowing the user to evaluate the mixer model under open-loop and closed-loop conditions. The progress report was based on an udergraduate Honors Thesis by Ms. Jamie Granger Austin in the Department of Electrical Engineering and Computer Science at Tulane University, during January-May 2003, and her continued efforts during August-December 2003. In collaboration with Dr. Hanz Richter and Dr. Fernando Figueroa we published these results in a NASA Tech Brief due to appear this year. Although the original proposal in 2003 did not address other components of the test facility, we decided in the last few months to extend our research and consider a related pressurization tank component as well. This report summarizes the results obtained towards a Graphical User Interface (GUI) for the evaluation and control of the hydrogen mixer subsystem model and for the pressurization tank each taken individually. Further research would combine the two

  5. Microcontroller USB interfacing with MATLAB GUI for low cost medical ultrasound scanners

    Directory of Open Access Journals (Sweden)

    Jean Rossario Raj

    2016-06-01

    Full Text Available This paper presents an 8051 microcontroller-based control of ultrasound scanner prototype hardware from a host laptop MATLAB GUI. The hardware control of many instruments is carried out by microcontrollers. These microcontrollers are in turn controlled from a GUI residing in a computing machine that is connected over the USB interface. Conventionally such GUIs are developed using ‘C’ language or its variants. But MATLAB GUI is a better tool, when such GUI programs need to do huge image/video processing. However interfacing MATLAB with the microcontroller is a challenging task. Here, MATLAB interfacing through an intermediate MEX ‘C’ language program is presented. This paper outlines the MEX programming methods for achieving the smooth interfacing of microcontrollers with MATLAB GUI.

  6. Calculus Problem Solution And Simulation Using GUI Of Matlab

    Directory of Open Access Journals (Sweden)

    Syaharuddin

    2017-09-01

    Full Text Available This research aims to develop the project application in teaching and learning Calculus using Grapichal User Interface GUI of Matlab. The scope of the development result includes 1 PreCalculus 2 Function Limit 3 Derivative and its application and 4 Integral and its application. Every aspect of development is presented according to the standards of material competence learning achievement indicators and solutions or settlement steps on each issue presented. This project application can be used by lecturers and students in universities to improve motivation mastery of material and student learning outcomes in the Calculus course. Development of this project application is done through 4 stages called 4-D namely Define Design Development and Dissemination. Based on the data analysis the results obtained at the validation stage of expert validity level average of 3.575 which means quite valid. Then on a limited trial the average student gave a response of 92.00 which means very good. While in the first field trial the average student gave a response of 89.30 which means very good and in the second field trial the average student gave a responded of 90.15 which means very good. Besides that we also solve computational calculus problems in Edwin J. Purcell Dale Varbergs Book of Volume 1 of Edition 5 of 48 questions that are divided into 64 cases.

  7. A GUI tool for beta function measurement using MATLAB

    International Nuclear Information System (INIS)

    Chen Guangling; Tian Shunqiang; Liu Guimin; Jiang Bocheng

    2009-01-01

    The beta function measurement is used to detect the shift in the betatron tune as the strength of an individual quadrupole magnet is varied. A GUI (graphic user interface) tool for the beta function measurement is developed using the MATLAB program language in the Linux environment, which facilitates the commissioning of the Shanghai Synchrotron Radiation Facility (SSRF) storage ring. In this paper, we describe the design of the application and give some measuring results and discussions about the definition of the measurement. The program has been optimized to solve some restrictions of the AT tracking code. After the correction with LOCO (linear optics from closed orbits), the horizontal and the vertical root mean square values (rms values) can be reduced to 0.12 and 0.10. (authors)

  8. Pemrograman Graphical User Interface (GUI) Dengan Matlab Untuk Mendesain Alat Bantu Opersai Matematika

    OpenAIRE

    Butar Butar, Ronisah Putra

    2011-01-01

    Graphical User Interface ( GUI) is a application program orient visual which woke up with graphical obyek in the place of comand of text for the user interaction. Graphical User Interface ( GUI) in MATLAB embraced in a application of GUIDE ( Graphical User Interface Builder). In this paper will be discuss about how disagning a appliance assist mathematics operation with program of Graphical User Interface ( GUI) with MATLAB with aim to as one of the appliance alternative assist...

  9. Responsive Graphical User Interface (ReGUI) and its Implementation in MATLAB

    OpenAIRE

    Mikulszky, Matej; Pocsova, Jana; Mojzisova, Andrea; Podlubny, Igor

    2017-01-01

    In this paper we introduce the responsive graphical user interface (ReGUI) approach to creating applications, and demonstrate how this approach can be implemented in MATLAB. The same general technique can be used in other programming languages.

  10. A graphical user interface (gui) matlab program Synthetic_Ves For ...

    African Journals Online (AJOL)

    An interactive and robust computer program for 1D forward modeling of Schlumberger Vertical Electrical Sounding (VES) curves for multilayered earth models is presented. The Graphical User Interface (GUI) enabled software, written in MATLAB v.7.12.0.635 (R2011a), accepts user-defined geologic model parameters (i.e. ...

  11. The development of gamma imaging system's aided software using matlab GUI

    International Nuclear Information System (INIS)

    Yang Yapeng; Xu Yuan; Jin Gen

    2011-01-01

    The RadCam 2000 gamma imaging system's software supplied by the manufacture cannot be run when the PC disconnected to the system's hardware, also cannot be used to analysis the results acquired, therefore, we have developed easyRadCam using Matlab GUI with the ability of generating the 'hot point' three-dimensional distribution by importing the results acquired, giving the counts distribution versus channel number. After the system be calibrated, we can get the energy spectrum, even the type of nuclides exist. (authors)

  12. Development of an improved MATLAB GUI for the prediction of coefficients of restitution, and integration into LMS.

    Energy Technology Data Exchange (ETDEWEB)

    Baca, Renee Nicole [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Congdon, Michael L. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Brake, Matthew Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2014-07-01

    In 2012, a Matlab GUI for the prediction of the coefficient of restitution was developed in order to enable the formulation of more accurate Finite Element Analysis (FEA) models of components. This report details the development of a new Rebound Dynamics GUI, and how it differs from the previously developed program. The new GUI includes several new features, such as source and citation documentation for the material database, as well as a multiple materials impact modeler for use with LMS Virtual.Lab Motion (LMS VLM), and a rigid body dynamics modeling software. The Rebound Dynamics GUI has been designed to work with LMS VLM to enable straightforward incorporation of velocity-dependent coefficients of restitution in rigid body dynamics simulations.

  13. Matlab Based LOCO

    International Nuclear Information System (INIS)

    Portmann, Greg; Safranek, James; Huang, Xiaobiao

    2011-01-01

    The LOCO algorithm has been used by many accelerators around the world. Although the uses for LOCO vary, the most common use has been to find calibration errors and correct the optics functions. The light source community in particular has made extensive use of the LOCO algorithms to tightly control the beta function and coupling. Maintaining high quality beam parameters requires constant attention so a relatively large effort was put into software development for the LOCO application. The LOCO code was originally written in FORTRAN. This code worked fine but it was somewhat awkward to use. For instance, the FORTRAN code itself did not calculate the model response matrix. It required a separate modeling code such as MAD to calculate the model matrix then one manually loads the data into the LOCO code. As the number of people interested in LOCO grew, it required making it easier to use. The decision to port LOCO to Matlab was relatively easy. It's best to use a matrix programming language with good graphics capability; Matlab was also being used for high level machine control; and the accelerator modeling code AT, (5), was already developed for Matlab. Since LOCO requires collecting and processing a relative large amount of data, it is very helpful to have the LOCO code compatible with the high level machine control, (3). A number of new features were added while porting the code from FORTRAN and new methods continue to evolve, (7)(9). Although Matlab LOCO was written with AT as the underlying tracking code, a mechanism to connect to other modeling codes has been provided.

  14. A MATLAB/Simulink based GUI for the CERES Simulator

    Science.gov (United States)

    Valencia, Luis H.

    1995-01-01

    The Clouds and The Earth's Radiant Energy System (CERES) simulator will allow flight operational familiarity with the CERES instrument prior to launch. It will provide a CERES instrument simulation facility for NASA Langley Research Center. NASA Goddard Space Flight Center and TRW. One of the objectives of building this simulator would be for use as a testbed for functionality checking of atypical memory uploads and for anomaly investigation. For instance, instrument malfunction due to memory damage requires troubleshooting on a simulator to determine the nature of the problem and to find a solution.

  15. Qt based GUI system for EPICS control systems

    International Nuclear Information System (INIS)

    Rhyder, A.; Fernandes, R.N.; Starritt, A.

    2012-01-01

    The Qt-based GUI system developed at the Australian Synchrotron for use on EPICS control systems has recently been enhanced to including support for imaging, plotting, user login, logging and configuration recipes. Plans are also being made to broaden its appeal within the wider EPICS community by expanding the range of development options and adding support for EPICS V4. Current features include graphical and non-graphical application development as well as simple 'code-free' GUI design. Additional features will allow developers to let the GUI system handle its own data using Qt-based EPICS-aware classes or, as an alternative, use other control systems data such as PSI's CAFE. (author)

  16. The implement of java based GUI for data acquisition system

    International Nuclear Information System (INIS)

    Yang Xiaoqing

    2003-01-01

    Web based technique have been used to produce a Graphic User Interface framework for small Data Acquisition System. A CORBA library used for the communication with the JRCS servers. The GUI was implemented by Java Swing. the integration between Java and CORBA provide a powerful independent distributed environment. (authors)

  17. gPKPDSim: a SimBiology®-based GUI application for PKPD modeling in drug development.

    Science.gov (United States)

    Hosseini, Iraj; Gajjala, Anita; Bumbaca Yadav, Daniela; Sukumaran, Siddharth; Ramanujan, Saroja; Paxson, Ricardo; Gadkar, Kapil

    2018-04-01

    Modeling and simulation (M&S) is increasingly used in drug development to characterize pharmacokinetic-pharmacodynamic (PKPD) relationships and support various efforts such as target feasibility assessment, molecule selection, human PK projection, and preclinical and clinical dose and schedule determination. While model development typically require mathematical modeling expertise, model exploration and simulations could in many cases be performed by scientists in various disciplines to support the design, analysis and interpretation of experimental studies. To this end, we have developed a versatile graphical user interface (GUI) application to enable easy use of any model constructed in SimBiology ® to execute various common PKPD analyses. The MATLAB ® -based GUI application, called gPKPDSim, has a single screen interface and provides functionalities including simulation, data fitting (parameter estimation), population simulation (exploring the impact of parameter variability on the outputs of interest), and non-compartmental PK analysis. Further, gPKPDSim is a user-friendly tool with capabilities including interactive visualization, exporting of results and generation of presentation-ready figures. gPKPDSim was designed primarily for use in preclinical and translational drug development, although broader applications exist. gPKPDSim is a MATLAB ® -based open-source application and is publicly available to download from MATLAB ® Central™. We illustrate the use and features of gPKPDSim using multiple PKPD models to demonstrate the wide applications of this tool in pharmaceutical sciences. Overall, gPKPDSim provides an integrated, multi-purpose user-friendly GUI application to enable efficient use of PKPD models by scientists from various disciplines, regardless of their modeling expertise.

  18. GSpecDisp: A matlab GUI package for phase-velocity dispersion measurements from ambient-noise correlations

    Science.gov (United States)

    Sadeghisorkhani, Hamzeh; Gudmundsson, Ólafur; Tryggvason, Ari

    2018-01-01

    We present a graphical user interface (GUI) package to facilitate phase-velocity dispersion measurements of surface waves in noise-correlation traces. The package, called GSpecDisp, provides an interactive environment for the measurements and presentation of the results. The selection of a dispersion curve can be done automatically or manually within the package. The data are time-domain cross-correlations in SAC format, but GSpecDisp measures phase velocity in the spectral domain. Two types of phase-velocity dispersion measurements can be carried out with GSpecDisp; (1) average velocity of a region, and (2) single-pair phase velocity. Both measurements are done by matching the real part of the cross-correlation spectrum with the appropriate Bessel function. Advantages of these two types of measurements are that no prior knowledge about surface-wave dispersion in the region is needed, and that phase velocity can be measured up to that period for which the inter-station distance corresponds to one wavelength. GSpecDisp can measure the phase velocity of Rayleigh and Love waves from all possible components of the noise correlation tensor. First, we briefly present the theory behind the methods that are used, and then describe different modules of the package. Finally, we validate the developed algorithms by applying them to synthetic and real data, and by comparison with other methods. The source code of GSpecDisp can be downloaded from: https://github.com/Hamzeh-Sadeghi/GSpecDisp

  19. A Matlab/Simulink-Based Interactive Module for Servo Systems Learning

    Science.gov (United States)

    Aliane, N.

    2010-01-01

    This paper presents an interactive module for learning both the fundamental and practical issues of servo systems. This module, developed using Simulink in conjunction with the Matlab graphical user interface (Matlab-GUI) tool, is used to supplement conventional lectures in control engineering and robotics subjects. First, the paper introduces the…

  20. Colour based sorting station with Matlab simulation

    Directory of Open Access Journals (Sweden)

    Constantin Victor

    2017-01-01

    Full Text Available The paper presents the design process and manufacturing elements of a colour-based sorting station. The system is comprised of a gravitational storage, which also contains the colour sensor. Parts are extracted using a linear pneumatic motor and are fed onto an electrically driven conveyor belt. Extraction of the parts is done at 4 points, using two pneumatic motors and a geared DC motor, while the 4th position is at the end of the belt. The mechanical parts of the system are manufactured using 3D printer technology, allowing for easy modification and adaption to the geometry of different parts. The paper shows all of the stages needed to design, optimize, test and implement the proposed solution. System optimization was performed using a graphical Matlab interface which also allows for sorting algorithm optimization.

  1. Implementing a Java Based GUI for RICH Detector Analysis

    Science.gov (United States)

    Lendacky, Andrew; Voloshin, Andrew; Benmokhtar, Fatiha

    2016-09-01

    The CLAS12 detector at Thomas Jefferson National Accelerator Facility (TJNAF) is undergoing an upgrade. One of the improvements is the addition of a Ring Imaging Cherenkov (RICH) detector to improve particle identification in the 3-8 GeV/c momentum range. Approximately 400 multi anode photomultiplier tubes (MAPMTs) are going to be used to detect Cherenkov Radiation in the single photoelectron spectra (SPS). The SPS of each pixel of all MAPMTs have been fitted to a mathematical model of roughly 45 parameters for 4 HVs, 3 OD. Out of those parameters, 9 can be used to evaluate the PMTs performance and placement in the detector. To help analyze data when the RICH is operational, a GUI application was written in Java using Swing and detector packages from TJNAF. To store and retrieve the data, a MySQL database program was written in Java using the JDBC package. Using the database, the GUI pulls the values and produces histograms and graphs for a selected PMT at a specific HV and OD. The GUI will allow researchers to easily view a PMT's performance and efficiency to help with data analysis and ring reconstruction when the RICH is finished.

  2. Conceptual Design of GRIG (GUI Based RETRAN Input Generator)

    International Nuclear Information System (INIS)

    Lee, Gyung Jin; Hwang, Su Hyun; Hong, Soon Joon; Lee, Byung Chul; Jang, Chan Su; Um, Kil Sup

    2007-01-01

    For the development of high performance methodology using advanced transient analysis code, it is essential to generate the basic input of transient analysis code by rigorous QA procedures. There are various types of operating NPPs (Nuclear Power Plants) in Korea such as Westinghouse plants, KSNP(Korea Standard Nuclear Power Plant), APR1400 (Advance Power Reactor), etc. So there are some difficulties to generate and manage systematically the input of transient analysis code reflecting the inherent characteristics of various types of NPPs. To minimize the user faults and investment man power and to generate effectively and accurately the basic inputs of transient analysis code for all domestic NPPs, it is needed to develop the program that can automatically generate the basic input, which can be directly applied to the transient analysis, from the NPP design material. ViRRE (Visual RETRAN Running Environment) developed by KEPCO (Korea Electric Power Corporation) and KAERI (Korea Atomic Energy Research Institute) provides convenient working environment for Kori Unit 1/2. ViRRE shows the calculated results through on-line display but its capability is limited on the convenient execution of RETRAN. So it can not be used as input generator. ViSA (Visual System Analyzer) developed by KAERI is a NPA (Nuclear Plant Analyzer) using RETRAN and MARS code as thermal-hydraulic engine. ViSA contains both pre-processing and post-processing functions. In the pre-processing, only the trip data cards and boundary conditions can be changed through GUI mode based on pre-prepared text-input, so the capability of input generation is very limited. SNAP (Symbolic Nuclear Analysis Package) developed by Applied Programming Technology, Inc. and NRC (Nuclear Regulatory Commission) provides efficient working environment for the use of nuclear safety analysis codes such as RELAP5 and TRAC-M codes. SNAP covers wide aspects of thermal-hydraulic analysis from model creation through data analysis

  3. MultiElec: A MATLAB Based Application for MEA Data Analysis.

    Science.gov (United States)

    Georgiadis, Vassilis; Stephanou, Anastasis; Townsend, Paul A; Jackson, Thomas R

    2015-01-01

    We present MultiElec, an open source MATLAB based application for data analysis of microelectrode array (MEA) recordings. MultiElec displays an extremely user-friendly graphic user interface (GUI) that allows the simultaneous display and analysis of voltage traces for 60 electrodes and includes functions for activation-time determination, the production of activation-time heat maps with activation time and isoline display. Furthermore, local conduction velocities are semi-automatically calculated along with their corresponding vector plots. MultiElec allows ad hoc signal suppression, enabling the user to easily and efficiently handle signal artefacts and for incomplete data sets to be analysed. Voltage traces and heat maps can be simply exported for figure production and presentation. In addition, our platform is able to produce 3D videos of signal progression over all 60 electrodes. Functions are controlled entirely by a single GUI with no need for command line input or any understanding of MATLAB code. MultiElec is open source under the terms of the GNU General Public License as published by the Free Software Foundation, version 3. Both the program and source code are available to download from http://www.cancer.manchester.ac.uk/MultiElec/.

  4. CMS Configuration Editor: GUI based application for user analysis job

    International Nuclear Information System (INIS)

    Cosa, A de

    2011-01-01

    We present the user interface and the software architecture of the Configuration Editor for the CMS experiment. The analysis workflow is organized in a modular way integrated within the CMS framework that organizes in a flexible way user analysis code. The Python scripting language is adopted to define the job configuration that drives the analysis workflow. It could be a challenging task for users, especially for newcomers, to develop analysis jobs managing the configuration of many required modules. For this reason a graphical tool has been conceived in order to edit and inspect configuration files. A set of common analysis tools defined in the CMS Physics Analysis Toolkit (PAT) can be steered and configured using the Config Editor. A user-defined analysis workflow can be produced starting from a standard configuration file, applying and configuring PAT tools according to the specific user requirements. CMS users can adopt this tool, the Config Editor, to create their analysis visualizing in real time which are the effects of their actions. They can visualize the structure of their configuration, look at the modules included in the workflow, inspect the dependences existing among the modules and check the data flow. They can visualize at which values parameters are set and change them according to what is required by their analysis task. The integration of common tools in the GUI needed to adopt an object-oriented structure in the Python definition of the PAT tools and the definition of a layer of abstraction from which all PAT tools inherit.

  5. Intelligent traffic lights based on MATLAB

    Science.gov (United States)

    Nie, Ying

    2018-04-01

    In this paper, I describes the traffic lights system and it has some. Through analysis, I used MATLAB technology, transformed the camera photographs into digital signals. Than divided the road vehicle is into three methods: very congestion, congestion, a little congestion. Through the MCU programming, solved the different roads have different delay time, and Used this method, saving time and resources, so as to reduce road congestion.

  6. The Design and Implementation of a GUI-Based Control Allocation Toolbox in the MATLAB Environment

    OpenAIRE

    Glaze, Michelle L.

    1998-01-01

    Control Allocation addresses the problem of the management of multiple, redundant control effectors. Generally speaking, control allocation is any method that is used to determine how the controls of a system should be positioned to achieve some desired effect. An infinite number of allocation methods exist, from the straight-forward direct allocation technique, to the daisy chaining approach, to the computationally simple generalized inverse method. Because different methods have advantag...

  7. Model-Based GUI Testing Using Uppaal at Novo Nordisk

    DEFF Research Database (Denmark)

    H. Hjort, Ulrik; Rasmussen, Jacob Illum; Larsen, Kim Guldstrand

    2009-01-01

    This paper details a collaboration between Aalborg University and Novo Nordiskin developing an automatic model-based test generation tool for system testing of the graphical user interface of a medical device on an embedded platform. The tool takes as input an UML Statemachine model and generates...

  8. Model-Based GUI Testing Using Uppaal at Novo Nordisk

    Science.gov (United States)

    Hjort, Ulrik H.; Illum, Jacob; Larsen, Kim G.; Petersen, Michael A.; Skou, Arne

    This paper details a collaboration between Aalborg University and Novo Nordiskin developing an automatic model-based test generation tool for system testing of the graphical user interface of a medical device on an embedded platform. The tool takes as input an UML Statemachine model and generates a test suite satisfying some testing criterion, such as edge or state coverage, and converts the individual test case into a scripting language that can be automatically executed against the target. The tool has significantly reduced the time required for test construction and generation, and reduced the number of test scripts while increasing the coverage.

  9. GUI development for GRASS GIS

    Directory of Open Access Journals (Sweden)

    Martin Landa

    2007-12-01

    Full Text Available This article discusses GUI development for GRASS GIS. Sophisticated native GUI for GRASS is one of the key points (besides the new 2D/3D raster library, vector architecture improvements, etc. for the future development of GRASS. In 2006 the GRASS development team decided to start working on the new generation of GUI instead of improving the current GUI based on Tcl/Tk.

  10. GUI Application for ATCA-based LLRF Carrier Board Management

    CERN Document Server

    Wychowaniak, Jan; Predki, Pawel; Napieralski, Andrzej

    2011-01-01

    The Advanced Telecommunications Computing Architecture (ATCA) standard describes an efficient and powerful platform, implementation of which was adopted to be used as a base for control systems in high energy physics. The ATCA platform is considered to be applied for the X-ray Free Electron Laser (X-FEL), being built at Deutsches Electronen- Synchrotron (DESY) in Hamburg, Germany. The Low Level Radio Frequency (LLRF) control system is composed of a few ATCA Carrier Boards. Carrier Board hosts Intelligent Platform Management Controller (IPMC), which is developed in compliance with the PICMG specifications. IPMC is responsible for management and monitoring of sub-modules installed on Carrier Boards and pluggable Advanced Mezzanine Card (AMC) modules. The ATCA Shelf Manager is the main control unit of a single ATCA crate, responsible for all power and fan modules and Carrier Boards installed in ATCA shelf. The device provides a system administrator with a set of control and diagnostic capabilities regarding the ...

  11. Development of GUI Temperature Monitoring System based on Thin-Film Optical Filter

    Directory of Open Access Journals (Sweden)

    Hilal Adnan Fadhil

    2017-08-01

    Full Text Available Fiber optic sensors have progressed rapidly in recent year as because it has many advantages over other types of sensors in terms of freedom from electromagnetic radiation, wide bandwidth, economy, can withstand high temperature and under harsh environment. Due to those reason a thermo sensor based on fiber optic which utilizes a thin-film optical band-pass filter has been developed. However, the proposed system has advantages over the fiber Bragg grating sensor which can observe the temperature in small area and low transmission loss. The simulation software is used to design a Graphical User Interface (GUI. The GUI system allows the user to monitor the condition and the status of the current temperature. The monitoring system presented in this paper is divided into three basic sub-systems which are retrieve the real-time data system, displaying out the data system, and warning system. This GUI system used to collect the data and process the data for displaying the current data and further checking as a history data has been keep. The values obtained of thermo sensor are measured as 30°C till 330°C and the wavelength values are between 1552.93nm till 1557.25nm

  12. MATLAB based beam orbit correction system of HLS storage ring

    International Nuclear Information System (INIS)

    Ding Shichuan; Liu Gongfa; Xuan Ke; Li Weimin; Wang Lin; Wang Jigang; Li Chuan; Bao Xun; Guo Weiqun

    2006-01-01

    The distortion of closed orbit usually causes much side effect which is harmful to synchrotron radiation source such as HLS, so it is necessary to correct the distortion of closed orbit. In this paper, the correction principle, development procedure and test of MATLAB based on beam orbit correction system of HLS storage ring are described. The correction system is consisted of the beam orbit measure system, corrector magnet system and the control system, and the beam orbit correction code based on MATLAB is working on the operation interface. The data of the beam orbit are analyzed and calculated firstly, and then the orbit is corrected by changing corrector strength via control system. The test shows that the distortion of closed orbit is from max 4.468 mm before correction to max 0.299 mm after correction as well as SDEV is from 2.986 mm to 0.087 mm. So the correction system reaches the design goal. (authors)

  13. The Research of Histogram Enhancement Technique Based on Matlab Software

    Directory of Open Access Journals (Sweden)

    Li Kai

    2014-08-01

    Full Text Available Histogram enhancement technique has been widely applied as a typical pattern in digital image processing. The paper is based on Matlab software, through the two ways of histogram equalization and histogram specification technologies to deal with the darker images, using two methods of partial equilibrium and mapping histogram to transform the original histograms, thereby enhanced the image information. The results show that these two kinds of techniques both can significantly improve the image quality and enhance the image feature.

  14. Mobile Carbon Monoxide Monitoring System Based on Arduino-Matlab for Environmental Monitoring Application

    Science.gov (United States)

    Azieda Mohd Bakri, Nur; Junid, Syed Abdul Mutalib Al; Razak, Abdul Hadi Abdul; Idros, Mohd Faizul Md; Karimi Halim, Abdul

    2015-11-01

    Nowadays, the increasing level of carbon monoxide globally has become a serious environmental issue which has been highlighted in most of the country globally. The monitoring of carbon monoxide content is one of the approaches to identify the level of carbon monoxide pollution towards providing the solution for control the level of carbon monoxide produced. Thus, this paper proposed a mobile carbon monoxide monitoring system for measuring the carbon monoxide content based on Arduino-Matlab General User Interface (GUI). The objective of this project is to design, develop and implement the real-time mobile carbon monoxide sensor system and interfacing for measuring the level of carbon monoxide contamination in real environment. Four phases or stages of work have been carried out for the accomplishment of the project, which classified as sensor development, controlling and integrating sensor, data collection and data analysis. As a result, a complete design and developed system has been verified with the handheld industrial standard carbon monoxide sensor for calibrating the sensor sensitivity and measurement in the laboratory. Moreover, the system has been tested in real environments by measuring the level of carbon monoxide in three different lands used location; industrial area; residential area and main road (commercial area). In this real environment test, the industrial area recorded the highest reading with 71.23 ppm and 82.59 ppm for sensor 1 and sensor 2 respectively. As a conclusion, the mobile realtime carbon monoxide system based on the Arduino-Matlab is the best approach to measure the carbon monoxide concentration in different land-used since it does not require a manual data collection and reduce the complexity of the existing carbon monoxide level concentration measurement practise at the same time with a complete data analysis facilities.

  15. Development of a GUI Based Front End for Open Source CFD Program, OpenFOAM

    International Nuclear Information System (INIS)

    Han, Samhee; Lee, Youngjin; Kim, Hyongchol; Park, Sunbyung; Kim, Hyunjik

    2013-01-01

    OpenFOAM is sorely lacking in user friendliness as it runs in console mode under Li nux. Run F OAM was developed to greatly simplify the task of running an OpenFOAM calculation under Windows OS. Run F OAM was written using Delphi object pascal language, and GLScene package was used for the 3D graphics. Verification of Run F OAM was carried out by performing some OpenFOAM CFD calculations provided in OpenFOAM package, and these showed that the use of Run F OAM is simple whilst providing sufficient allowances in user modifications. Run F oam, a GUI based front end program to simplify running Open Foam CFD cases, has been developed. By incorporating numerous GUI in the program, Run F oam has demonstrated that running an Open Foam case can be easily accomplished. There is a potential for further development as the Open Foam has the great advantage of being free to develop and to use. There is also a potential to couple or interface the Open Foam with the systems analysis code such as Relap5

  16. Development of a GUI Based Front End for Open Source CFD Program, OpenFOAM

    Energy Technology Data Exchange (ETDEWEB)

    Han, Samhee; Lee, Youngjin; Kim, Hyongchol; Park, Sunbyung; Kim, Hyunjik [Nuclear Safety Evaluation, Daejeon (Korea, Republic of)

    2013-05-15

    OpenFOAM is sorely lacking in user friendliness as it runs in console mode under Li nux. Run{sub F}OAM was developed to greatly simplify the task of running an OpenFOAM calculation under Windows OS. Run{sub F}OAM was written using Delphi object pascal language, and GLScene package was used for the 3D graphics. Verification of Run{sub F}OAM was carried out by performing some OpenFOAM CFD calculations provided in OpenFOAM package, and these showed that the use of Run{sub F}OAM is simple whilst providing sufficient allowances in user modifications. Run{sub F}oam, a GUI based front end program to simplify running Open Foam CFD cases, has been developed. By incorporating numerous GUI in the program, Run{sub F}oam has demonstrated that running an Open Foam case can be easily accomplished. There is a potential for further development as the Open Foam has the great advantage of being free to develop and to use. There is also a potential to couple or interface the Open Foam with the systems analysis code such as Relap5.

  17. Statistics in Matlab a primer

    CERN Document Server

    Cho, MoonJung

    2014-01-01

    List of Tables Preface MATLAB BasicsDesktop Environment Getting Help and Other Documentation Data Import and Export Data I/O via the Command Line The Import Wizard Examples of Data I/O in MATLAB Data I/O with the Statistics Toolbox More Functions for Data I/O Data in MATLAB Data Objects in Base MATLAB Accessing Data Elements Examples of Joining Data Sets Data Types in the Statistics Toolbox Object-Oriented Programming Miscellaneous Topics File and Workspace Management Punctuation in MATLAB Arithmetic Operators Functions in MATLAB Summary and Further Reading Visualizing DataBasic Plot Functions Plotting 2-D Data Plotting 3-D Data Examples Scatter Plots Basic 2-D and 3-D Scatter Plots Scatter Plot Matrix Examples GUIs for Graphics Simple Plot Editing Plotting Tools Interface PLOTS Tab Summary and Further Reading Descriptive StatisticsMeasures of Location Means, Medians, and Modes Examples Measures of Dispersion Range Variance and Standard Deviation Covariance and Correlation Examples Describing the Distribution...

  18. SIGNUM: A Matlab, TIN-based landscape evolution model

    Science.gov (United States)

    Refice, A.; Giachetta, E.; Capolongo, D.

    2012-08-01

    Several numerical landscape evolution models (LEMs) have been developed to date, and many are available as open source codes. Most are written in efficient programming languages such as Fortran or C, but often require additional code efforts to plug in to more user-friendly data analysis and/or visualization tools to ease interpretation and scientific insight. In this paper, we present an effort to port a common core of accepted physical principles governing landscape evolution directly into a high-level language and data analysis environment such as Matlab. SIGNUM (acronym for Simple Integrated Geomorphological Numerical Model) is an independent and self-contained Matlab, TIN-based landscape evolution model, built to simulate topography development at various space and time scales. SIGNUM is presently capable of simulating hillslope processes such as linear and nonlinear diffusion, fluvial incision into bedrock, spatially varying surface uplift which can be used to simulate changes in base level, thrust and faulting, as well as effects of climate changes. Although based on accepted and well-known processes and algorithms in its present version, it is built with a modular structure, which allows to easily modify and upgrade the simulated physical processes to suite virtually any user needs. The code is conceived as an open-source project, and is thus an ideal tool for both research and didactic purposes, thanks to the high-level nature of the Matlab environment and its popularity among the scientific community. In this paper the simulation code is presented together with some simple examples of surface evolution, and guidelines for development of new modules and algorithms are proposed.

  19. Development and validation of gui based input file generation code for relap

    International Nuclear Information System (INIS)

    Anwar, M.M.; Khan, A.A.; Chughati, I.R.; Chaudri, K.S.; Inyat, M.H.; Hayat, T.

    2009-01-01

    Reactor Excursion and Leak Analysis Program (RELAP) is a widely acceptable computer code for thermal hydraulics modeling of Nuclear Power Plants. It calculates thermal- hydraulic transients in water-cooled nuclear reactors by solving approximations to the one-dimensional, two-phase equations of hydraulics in an arbitrarily connected system of nodes. However, the preparation of input file and subsequent analysis of results in this code is a tedious task. The development of a Graphical User Interface (GUI) for preparation of the input file for RELAP-5 is done with the validation of GUI generated Input File. The GUI is developed in Microsoft Visual Studio using Visual C Sharp (C) as programming language. The Nodalization diagram is drawn graphically and the program contains various component forms along with the starting data form, which are launched for properties assignment to generate Input File Cards serving as GUI for the user. The GUI is provided with Open / Save function to store and recall the Nodalization diagram along with Components' properties. The GUI generated Input File is validated for several case studies and individual component cards are compared with the originally required format. The generated Input File of RELAP is found consistent with the requirement of RELAP. The GUI provided a useful platform for simulating complex hydrodynamic problems efficiently with RELAP. (author)

  20. Gui Matlab Untuk Kombinasi Metode Analytic Hierarchy Process (Ahp) Dan Topsis Dalam Pemilihan Cafe Terfavorit (Studi Kasus : Pemilihan Cafe Terfavorit Di Daerah Tembalang, Semarang)

    OpenAIRE

    Netra, Putri Aulia; Widiharih, Tatik; Yasin, Hasbi

    2016-01-01

    Tembalang is an area that has many culinary business. One of them is cafe bussiness. This condition causes high competition in attracting consumers to gain profit. According to this situation, we need a method to asses the most favourite cafe based on consumer taste to create cafe as they expected. The methods used in choosing the most favourite cafe are Analytic Hierarchy Process (AHP) and Technique for Order Preference by Similarity to Ideal Solution (TOPSIS). Both of method are the methods...

  1. XML-Based Generator of C++ Code for Integration With GUIs

    Science.gov (United States)

    Hua, Hook; Oyafuso, Fabiano; Klimeck, Gerhard

    2003-01-01

    An open source computer program has been developed to satisfy a need for simplified organization of structured input data for scientific simulation programs. Typically, such input data are parsed in from a flat American Standard Code for Information Interchange (ASCII) text file into computational data structures. Also typically, when a graphical user interface (GUI) is used, there is a need to completely duplicate the input information while providing it to a user in a more structured form. Heretofore, the duplication of the input information has entailed duplication of software efforts and increases in susceptibility to software errors because of the concomitant need to maintain two independent input-handling mechanisms. The present program implements a method in which the input data for a simulation program are completely specified in an Extensible Markup Language (XML)-based text file. The key benefit for XML is storing input data in a structured manner. More importantly, XML allows not just storing of data but also describing what each of the data items are. That XML file contains information useful for rendering the data by other applications. It also then generates data structures in the C++ language that are to be used in the simulation program. In this method, all input data are specified in one place only, and it is easy to integrate the data structures into both the simulation program and the GUI. XML-to-C is useful in two ways: 1. As an executable, it generates the corresponding C++ classes and 2. As a library, it automatically fills the objects with the input data values.

  2. A GUI Based Software for Sizing Stand Alone AC Coupled Hybrid PV-Diesel Power System under Malaysia Climate

    Science.gov (United States)

    Syafiqah Syahirah Mohamed, Nor; Amalina Banu Mohamat Adek, Noor; Hamid, Nurul Farhana Abd

    2018-03-01

    This paper presents the development of Graphical User Interface (GUI) software for sizing main component in AC coupled photovoltaic (PV) hybrid power system based on Malaysia climate. This software provides guideline for PV system integrator to design effectively the size of components and system configuration to match the system and load requirement with geographical condition. The concept of the proposed software is balancing the annual average renewable energy generation and load demand. In this study, the PV to diesel generator (DG) ratio is introduced by considering the hybrid system energy contribution. The GUI software is able to size the main components in the PV hybrid system to meet with the set target of energy contribution ratio. The rated powers of the components to be defined are PV array, grid-tie inverter, bi-directional inverter, battery storage and DG. GUI is used to perform all the system sizing procedures to make it user friendly interface as a sizing tool for AC coupled PV hybrid system. The GUI will be done by using Visual Studio 2015 based on the real data under Malaysia Climate.

  3. TMSEEG: A MATLAB-Based Graphical User Interface for Processing Electrophysiological Signals during Transcranial Magnetic Stimulation

    Directory of Open Access Journals (Sweden)

    Sravya Atluri

    2016-10-01

    Full Text Available Concurrent recording of electroencephalography (EEG during transcranial magnetic stimulation (TMS is an emerging and powerful tool for studying brain health and function. Despite a growing interest in adaptation of TMS-EEG across neuroscience disciplines, its wide-spread utility is limited by signal processing challenges. These challenges arise due to the nature of TMS and the sensitivity of EEG to artifacts that often mask TMS-evoked potentials (TEPs. With an increase in the complexity of data processing methods and a growing interest in multi-site data integration, analysis of TMS-EEG data requires the development of a standardized method to recover TEPs from various sources of artifacts. This paper introduces TMSEEG, an open-source MATLAB application comprised of multiple algorithms organized to facilitate a step-by-step procedure for TMS-EEG signal processing. Using a modular design and interactive GUIs, this toolbox aims to streamline TMS-EEG signal processing for both novice and experienced users. Specifically, TMSEEG provides (i targeted removal of TMS-induced and general EEG artifacts, (ii a step-by-step modular workflow with flexibility to modify existing algorithms and add customized algorithms, (iii a comprehensive display and quantification of artifacts, (iv quality control check points with visual feedback of TEPs throughout the data processing workflow, and (v capability to label and store a database of artifacts. In addition to these features, the software architecture of TMSEEG ensures minimal user effort in initial setup and configuration of parameters for each processing step. This is partly accomplished through a close integration with EEGLAB, a widely used open-source toolbox for EEG signal processing. In this paper we introduce TMSEEG, validate its features, and demonstrate its application in extracting TEPs across several single- and multi-pulse TMS protocols. As the first open-source GUI-based pipeline for TMS-EEG signal

  4. TMSEEG: A MATLAB-Based Graphical User Interface for Processing Electrophysiological Signals during Transcranial Magnetic Stimulation

    Science.gov (United States)

    Atluri, Sravya; Frehlich, Matthew; Mei, Ye; Garcia Dominguez, Luis; Rogasch, Nigel C.; Wong, Willy; Daskalakis, Zafiris J.; Farzan, Faranak

    2016-01-01

    Concurrent recording of electroencephalography (EEG) during transcranial magnetic stimulation (TMS) is an emerging and powerful tool for studying brain health and function. Despite a growing interest in adaptation of TMS-EEG across neuroscience disciplines, its widespread utility is limited by signal processing challenges. These challenges arise due to the nature of TMS and the sensitivity of EEG to artifacts that often mask TMS-evoked potentials (TEP)s. With an increase in the complexity of data processing methods and a growing interest in multi-site data integration, analysis of TMS-EEG data requires the development of a standardized method to recover TEPs from various sources of artifacts. This article introduces TMSEEG, an open-source MATLAB application comprised of multiple algorithms organized to facilitate a step-by-step procedure for TMS-EEG signal processing. Using a modular design and interactive graphical user interface (GUI), this toolbox aims to streamline TMS-EEG signal processing for both novice and experienced users. Specifically, TMSEEG provides: (i) targeted removal of TMS-induced and general EEG artifacts; (ii) a step-by-step modular workflow with flexibility to modify existing algorithms and add customized algorithms; (iii) a comprehensive display and quantification of artifacts; (iv) quality control check points with visual feedback of TEPs throughout the data processing workflow; and (v) capability to label and store a database of artifacts. In addition to these features, the software architecture of TMSEEG ensures minimal user effort in initial setup and configuration of parameters for each processing step. This is partly accomplished through a close integration with EEGLAB, a widely used open-source toolbox for EEG signal processing. In this article, we introduce TMSEEG, validate its features and demonstrate its application in extracting TEPs across several single- and multi-pulse TMS protocols. As the first open-source GUI-based pipeline

  5. TMSEEG: A MATLAB-Based Graphical User Interface for Processing Electrophysiological Signals during Transcranial Magnetic Stimulation.

    Science.gov (United States)

    Atluri, Sravya; Frehlich, Matthew; Mei, Ye; Garcia Dominguez, Luis; Rogasch, Nigel C; Wong, Willy; Daskalakis, Zafiris J; Farzan, Faranak

    2016-01-01

    Concurrent recording of electroencephalography (EEG) during transcranial magnetic stimulation (TMS) is an emerging and powerful tool for studying brain health and function. Despite a growing interest in adaptation of TMS-EEG across neuroscience disciplines, its widespread utility is limited by signal processing challenges. These challenges arise due to the nature of TMS and the sensitivity of EEG to artifacts that often mask TMS-evoked potentials (TEP)s. With an increase in the complexity of data processing methods and a growing interest in multi-site data integration, analysis of TMS-EEG data requires the development of a standardized method to recover TEPs from various sources of artifacts. This article introduces TMSEEG, an open-source MATLAB application comprised of multiple algorithms organized to facilitate a step-by-step procedure for TMS-EEG signal processing. Using a modular design and interactive graphical user interface (GUI), this toolbox aims to streamline TMS-EEG signal processing for both novice and experienced users. Specifically, TMSEEG provides: (i) targeted removal of TMS-induced and general EEG artifacts; (ii) a step-by-step modular workflow with flexibility to modify existing algorithms and add customized algorithms; (iii) a comprehensive display and quantification of artifacts; (iv) quality control check points with visual feedback of TEPs throughout the data processing workflow; and (v) capability to label and store a database of artifacts. In addition to these features, the software architecture of TMSEEG ensures minimal user effort in initial setup and configuration of parameters for each processing step. This is partly accomplished through a close integration with EEGLAB, a widely used open-source toolbox for EEG signal processing. In this article, we introduce TMSEEG, validate its features and demonstrate its application in extracting TEPs across several single- and multi-pulse TMS protocols. As the first open-source GUI-based pipeline

  6. Research based on matlab method of digital trapezoidal shaping filter

    International Nuclear Information System (INIS)

    Zhou Qinghua; Zhang Ruanyu; Li Taihua

    2008-01-01

    In order to develop digital shaping system fast and conveniently, the paper presents the method of optimizing the trapezoidal shaping filter's parameters by using MATLAB, and discusses the affections of the parameters to the shaping result by this method. (authors)

  7. Development of a GUI based RETRAN running environment for Kori NPP units 1 and 2

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Kyung Doo

    2000-09-01

    RETRAN was developed by EPRI and introduced for domestic use. RETRAN, which is a best-estimate system code approved by USNRC and used by most utilities in US, can be used in various plant support activities such as licensing calculations for plant design changes, EOP validation, and training. RETRAN, however, has been limited to only a few groups of specialists because of the difficulty involved in its usage. The aim of this project is to develop a graphic user interface (GUI) based code running environment for RETRAN named PRE (RETRAN Running Environment) in order to assist ordinary users in their input preparation, code execution, and output interpretation. TRIP and CONTROL BLOCK and VOLUME/JUNCTION input cards from base input are designed to be able to modify the existing input cards and add a new input cards through dialog boxes for users who have not much expertise in use of RETRAN. The RRE is designed to provide the calculated results though on-line X-Y graphs, plant mimics, indicators, nodalization window for easy interpretation of its output. It also provides the replay function using pre-calculated results saved in files. The RRE was developed for Kori NPP units 1 and 2 using Delphi 4.0 and Visual Fortran 6.0 and it runs on personal computers to increase the accessibility. The RRE developed in this study for Kori units 1 and 2 can be used in various plant support activities which require thermal-hydraulic analysis of the NSSS (Nuclear Steam Supply System) such as licensing calculations for plant design change, validation of EOP improvement, and operator training. The RRE developed can be expanded its application to other nuclear plants with low expense.

  8. Development of a GUI based RETRAN running environment for Kori NPP units 1 and 2

    International Nuclear Information System (INIS)

    Kim, Kyung Doo

    2000-09-01

    RETRAN was developed by EPRI and introduced for domestic use. RETRAN, which is a best-estimate system code approved by USNRC and used by most utilities in US, can be used in various plant support activities such as licensing calculations for plant design changes, EOP validation, and training. RETRAN, however, has been limited to only a few groups of specialists because of the difficulty involved in its usage. The aim of this project is to develop a graphic user interface (GUI) based code running environment for RETRAN named PRE (RETRAN Running Environment) in order to assist ordinary users in their input preparation, code execution, and output interpretation. TRIP and CONTROL BLOCK and VOLUME/JUNCTION input cards from base input are designed to be able to modify the existing input cards and add a new input cards through dialog boxes for users who have not much expertise in use of RETRAN. The RRE is designed to provide the calculated results though on-line X-Y graphs, plant mimics, indicators, nodalization window for easy interpretation of its output. It also provides the replay function using pre-calculated results saved in files. The RRE was developed for Kori NPP units 1 and 2 using Delphi 4.0 and Visual Fortran 6.0 and it runs on personal computers to increase the accessibility. The RRE developed in this study for Kori units 1 and 2 can be used in various plant support activities which require thermal-hydraulic analysis of the NSSS (Nuclear Steam Supply System) such as licensing calculations for plant design change, validation of EOP improvement, and operator training. The RRE developed can be expanded its application to other nuclear plants with low expense

  9. A MATLAB-Aided Method for Teaching Calculus-Based Business Mathematics

    Science.gov (United States)

    Liang, Jiajuan; Pan, William S. Y.

    2009-01-01

    MATLAB is a powerful package for numerical computation. MATLAB contains a rich pool of mathematical functions and provides flexible plotting functions for illustrating mathematical solutions. The course of calculus-based business mathematics consists of two major topics: 1) derivative and its applications in business; and 2) integration and its…

  10. Kinematic simulation and analysis of robot based on MATLAB

    Science.gov (United States)

    Liao, Shuhua; Li, Jiong

    2018-03-01

    The history of industrial automation is characterized by quick update technology, however, without a doubt, the industrial robot is a kind of special equipment. With the help of MATLAB matrix and drawing capacity in the MATLAB environment each link coordinate system set up by using the d-h parameters method and equation of motion of the structure. Robotics, Toolbox programming Toolbox and GUIDE to the joint application is the analysis of inverse kinematics and path planning and simulation, preliminary solve the problem of college students the car mechanical arm positioning theory, so as to achieve the aim of reservation.

  11. Simulaser, a graphical laser simulator based on Matlab Simulink

    CSIR Research Space (South Africa)

    Jacobs, Cobus

    2016-07-01

    Full Text Available We present a single-element plane-wave laser rate equation model and its implementation as a graphical laser simulation library using Matlab Simulink. Simulink’s graphical interface and vector capabilities provide a unique layer of abstraction...

  12. Matlab Geochemistry: An open source geochemistry solver based on MRST

    Science.gov (United States)

    McNeece, C. J.; Raynaud, X.; Nilsen, H.; Hesse, M. A.

    2017-12-01

    The study of geological systems often requires the solution of complex geochemical relations. To address this need we present an open source geochemical solver based on the Matlab Reservoir Simulation Toolbox (MRST) developed by SINTEF. The implementation supports non-isothermal multicomponent aqueous complexation, surface complexation, ion exchange, and dissolution/precipitation reactions. The suite of tools available in MRST allows for rapid model development, in particular the incorporation of geochemical calculations into transport simulations of multiple phases, complex domain geometry and geomechanics. Different numerical schemes and additional physics can be easily incorporated into the existing tools through the object-oriented framework employed by MRST. The solver leverages the automatic differentiation tools available in MRST to solve arbitrarily complex geochemical systems with any choice of species or element concentration as input. Four mathematical approaches enable the solver to be quite robust: 1) the choice of chemical elements as the basis components makes all entries in the composition matrix positive thus preserving convexity, 2) a log variable transformation is used which transfers the nonlinearity to the convex composition matrix, 3) a priori bounds on variables are calculated from the structure of the problem, constraining Netwon's path and 4) an initial guess is calculated implicitly by sequentially adding model complexity. As a benchmark we compare the model to experimental and semi-analytic solutions of the coupled salinity-acidity transport system. Together with the reservoir simulation capabilities of MRST the solver offers a promising tool for geochemical simulations in reservoir domains for applications in a diversity of fields from enhanced oil recovery to radionuclide storage.

  13. The method in γ spectrum analysis with artificial neural network based on MATLAB

    International Nuclear Information System (INIS)

    Bai Lixin; Zhang Yiyun; Xu Jiayun; Wu Liping

    2003-01-01

    Analyzing γ spectrum with artificial neural network have the advantage of using the information of whole spectrum and having high analyzing precision. A convenient realization based on MATLAB was present in this

  14. Curtain Antenna Array Simulation Research Based on MATLAB

    Directory of Open Access Journals (Sweden)

    Hongbo LIU

    2014-01-01

    Full Text Available For the radiating capacity of curtain antenna array, this paper constructs a three- line-four-column curtain antenna array using cage antenna as the antenna array element and obtains a normalizing 3D radiation patterns through conducting simulation with MATLAB. Meanwhile, the relationships between the antenna spacing and the largest directivity coefficient, as well as the communication frequency and largest directivity coefficient are analyzed in this paper. It turns out that the max value will generate when the antenna spacing is around 18 m and the best communication effect will be achieved when the communication frequency is about 12.4 MHz.

  15. Comparison of Different Techniques of Web GUI-based Testing with the Representative Tools Selenium and EyeSel

    OpenAIRE

    Jiang, Haozhen; Chen, Yi

    2017-01-01

    Context. Software testing is becoming more and more important in software development life-cycle especially for web testing. Selenium is one of the most widely used property-based Graph-User-Interface(GUI) web testing tools. Nevertheless, it also has some limitations. For instance, Selenium cannot test the web components in some specific plugins or HTML5 videos frame. But it is important for testers to verify the functionality of plugins or videos on the websites. Recently, the theory of the ...

  16. A labview-based GUI for the measurement of otoacoustic emissions.

    Science.gov (United States)

    Wu, Ye; McNamara, D M; Ziarani, A K

    2006-01-01

    This paper presents the outcome of a software development project aimed at creating a stand-alone user-friendly signal processing algorithm for the estimation of distortion product otoacoustic emission (OAE) signals. OAE testing is one of the most commonly used methods of first screening of newborns' hearing. Most of the currently available commercial devices rely upon averaging long strings of data and subsequent discrete Fourier analysis to estimate low level OAE signals from within the background noise in the presence of the strong stimuli. The main shortcoming of the presently employed technology is the need for long measurement time and its low noise immunity. The result of the software development project presented here is a graphical user interface (GUI) module that implements a recently introduced adaptive technique of OAE signal estimation. This software module is easy to use and is freely disseminated on the Internet for the use of the hearing research community. This GUI module allows loading of the a priori recorded OAE signals into the workspace, and provides the user with interactive instructions for the OAE signal estimation. Moreover, the user can generate simulated OAE signals to objectively evaluate the performance capability of the implemented signal processing technique.

  17. Teaching Tool for a Control Systems Laboratory Using a Quadrotor as a Plant in MATLAB

    Science.gov (United States)

    Khan, Subhan; Jaffery, Mujtaba Hussain; Hanif, Athar; Asif, Muhammad Rizwan

    2017-01-01

    This paper presents a MATLAB-based application to teach the guidance, navigation, and control concepts of a quadrotor to undergraduate students, using a graphical user interface (GUI) and 3-D animations. The Simulink quadrotor model is controlled by a proportional integral derivative controller and a linear quadratic regulator controller. The GUI…

  18. A modeling GUI for accelerator physics of the storage ring at SSRF

    International Nuclear Information System (INIS)

    Chen Guangling; Tian Shunqiang; Liu Guimin; Jiang Bocheng

    2009-01-01

    In this paper, we report a MATLAB-based GUI tool, bodgui, which integrates functions of lattice editor, linear match, and nonlinear optimization, and visualized tracking functions for beam optics design. A user can switch his/her design procedures one to another. Flexibilities are provided for adjusting or optimizing the lattice settings in commissioning or operation of the accelerators. The algorithm of the linear match and nonlinear optimization, and the GUI windows including the main functions and running status, are presented. The SSRF storage ring was employed as a test lattice. Several optics modes designed and optimized by the GUI tools were used for commissioning the storage ring. Functions of bodgui tool are machine-independent, and it can be well applied to modern light sources being built in other parts of the world. (authors)

  19. A suite of MATLAB-based computational tools for automated analysis of COPAS Biosort data

    Science.gov (United States)

    Morton, Elizabeth; Lamitina, Todd

    2010-01-01

    Complex Object Parametric Analyzer and Sorter (COPAS) devices are large-object, fluorescence-capable flow cytometers used for high-throughput analysis of live model organisms, including Drosophila melanogaster, Caenorhabditis elegans, and zebrafish. The COPAS is especially useful in C. elegans high-throughput genome-wide RNA interference (RNAi) screens that utilize fluorescent reporters. However, analysis of data from such screens is relatively labor-intensive and time-consuming. Currently, there are no computational tools available to facilitate high-throughput analysis of COPAS data. We used MATLAB to develop algorithms (COPAquant, COPAmulti, and COPAcompare) to analyze different types of COPAS data. COPAquant reads single-sample files, filters and extracts values and value ratios for each file, and then returns a summary of the data. COPAmulti reads 96-well autosampling files generated with the ReFLX adapter, performs sample filtering, graphs features across both wells and plates, performs some common statistical measures for hit identification, and outputs results in graphical formats. COPAcompare performs a correlation analysis between replicate 96-well plates. For many parameters, thresholds may be defined through a simple graphical user interface (GUI), allowing our algorithms to meet a variety of screening applications. In a screen for regulators of stress-inducible GFP expression, COPAquant dramatically accelerated data analysis and allowed us to rapidly move from raw data to hit identification. Because the COPAS file structure is standardized and our MATLAB code is freely available, our algorithms should be extremely useful for analysis of COPAS data from multiple platforms and organisms. The MATLAB code is freely available at our web site (www.med.upenn.edu/lamitinalab/downloads.shtml). PMID:20569218

  20. A GUI-based intuitive tool for analyzing formats and extracting contents of binary data in fusion research

    International Nuclear Information System (INIS)

    Naito, O.

    2015-01-01

    Highlights: • A GUI-based intuitive tool for data format analysis is presented. • Data can be viewed in any data types specified by the user in real time. • Analyzed formats are saved and reused as templates for other data of the same forms. • Users can easily extract contents in any forms by writing a simple script file. • The tool would be useful for exchanging data in collaborative fusion researches. - Abstract: An intuitive tool with graphical user interface (GUI) for analyzing formats and extracting contents of binary data in fusion research is presented. Users can examine structures of binary data at arbitrary addresses by selecting their type from a list of radio buttons in the data inspection window and checking their representations instantly on the computer screen. The result of analysis is saved in a file which contains the information such as name, data type, start address, and array size of the data. If the array size of some data depends on others that appear prior to the former and if the users specify their relation in the inspection window, the resultant file can also be used as a format template for the same series of data. By writing a simple script, the users can extract the contents of data either to a text or binary file in the format of their preference. As a real-life example, the tool is applied to the MHD equilibrium data at JT-60U, where poloidal flux data are extracted and converted to a format suitable for contour plotting in other data visualization program. The tool would be useful in collaborative fusion researches for exchanging relatively small-size data, which don’t fit in well with the standard routine processes

  1. Development of Stand Alone Application Tool for Processing and Quality Measurement of Weld Imperfection Image Captured by μ-Focused Digital Radiography Using MATLAB- Based Graphical User Interface

    Directory of Open Access Journals (Sweden)

    PZ Nadila

    2012-12-01

    Full Text Available Digital radiography incresingly is being applied in the fabrication industry. Compared to film- based radiography, digitally radiographed images can be acquired with less time and fewer exposures. However, noises can simply occur on the digital image resulting in a low-quality result. Due to this and the system’s complexity, parameters’ sensitivity, and environmental effects, the results can be difficult to interpret, even for a radiographer. Therefore, the need of an application tool to improve and evaluate the image is becoming urgent. In this research, a user-friendly tool for image processing and image quality measurement was developed. The resulting tool contains important components needed by radiograph inspectors in analyzing defects and recording the results. This tool was written by using image processing and the graphical user interface development environment and compiler (GUIDE toolbox available in Matrix Laboratory (MATLAB R2008a. In image processing methods, contrast adjustment, and noise removal, edge detection was applied. In image quality measurement methods, mean square error (MSE, peak signal-to-noise ratio (PSNR, modulation transfer function (MTF, normalized signal-to-noise ratio (SNRnorm, sensitivity and unsharpness were used to measure the image quality. The graphical user interface (GUI wass then compiled to build a Windows, stand-alone application that enables this tool to be executed independently without the installation of MATLAB.

  2. A platform for dynamic simulation and control of movement based on OpenSim and MATLAB.

    Science.gov (United States)

    Mansouri, Misagh; Reinbolt, Jeffrey A

    2012-05-11

    Numerical simulations play an important role in solving complex engineering problems and have the potential to revolutionize medical decision making and treatment strategies. In this paper, we combine the rapid model-based design, control systems and powerful numerical method strengths of MATLAB/Simulink with the simulation and human movement dynamics strengths of OpenSim by developing a new interface between the two software tools. OpenSim is integrated with Simulink using the MATLAB S-function mechanism, and the interface is demonstrated using both open-loop and closed-loop control systems. While the open-loop system uses MATLAB/Simulink to separately reproduce the OpenSim Forward Dynamics Tool, the closed-loop system adds the unique feature of feedback control to OpenSim, which is necessary for most human movement simulations. An arm model example was successfully used in both open-loop and closed-loop cases. For the open-loop case, the simulation reproduced results from the OpenSim Forward Dynamics Tool with root mean square (RMS) differences of 0.03° for the shoulder elevation angle and 0.06° for the elbow flexion angle. MATLAB's variable step-size integrator reduced the time required to generate the forward dynamic simulation from 7.1s (OpenSim) to 2.9s (MATLAB). For the closed-loop case, a proportional-integral-derivative controller was used to successfully balance a pole on model's hand despite random force disturbances on the pole. The new interface presented here not only integrates the OpenSim and MATLAB/Simulink software tools, but also will allow neuroscientists, physiologists, biomechanists, and physical therapists to adapt and generate new solutions as treatments for musculoskeletal conditions. Copyright © 2012 Elsevier Ltd. All rights reserved.

  3. Teaching GUI-Programming Concepts to Prospective K12 ICT Teachers: MIT App Inventor as an Alternative to Text-Based Languages

    Science.gov (United States)

    Mihci, Can; Ozdener Donmez, Nesrin

    2017-01-01

    The purpose of this research is to investigate the short and long-term effects of using GUI-oriented visual Blocks-Based Programming languages (BBL) as a 2nd tier tool when teaching programming to prospective K12 ICT teachers. In a mixed-method approach, the effect on academic success as well as the impact on professional opinions and preferences…

  4. MATLAB-Based Program for Teaching Autocorrelation Function and Noise Concepts

    Science.gov (United States)

    Jovanovic Dolecek, G.

    2012-01-01

    An attractive MATLAB-based tool for teaching the basics of autocorrelation function and noise concepts is presented in this paper. This tool enhances traditional in-classroom lecturing. The demonstrations of the tool described here highlight the description of the autocorrelation function (ACF) in a general case for wide-sense stationary (WSS)…

  5. Python GUI Scripting Interface for Running Atomic Physics Applications

    OpenAIRE

    Tahat, Amani; Tahat, Mofleh

    2011-01-01

    We create a Python GUI scripting interface working under Windows in addition to (UNIX/Linux). The GUI has been built around the Python open-source programming language. We use the Python's GUI library that so called Python Mega Widgets (PMW) and based on Tkinter Python module (http://www.freenetpages.co.uk/hp/alan.gauld/tutgui.htm). The new GUI was motivated primarily by the desire of more updated operations, more flexibility incorporating future and current improvements in producing atomic d...

  6. MATLAB - Introduction

    International Nuclear Information System (INIS)

    Jung, Heon Seul

    2005-08-01

    This book introduces MATLAB giving descriptions of analysis and design of this control system like what is control? cases of control system, working environment of MATLAB, signs of MATLAB, commands of MATLAB, and drawing graphs. It also tells of basic use of simulink, mathematical model of physical system like mechanical-electrical analogous system, system analysis in time part, frequency analysis, state space and design such as canonical from and principle of duality and state observer design.

  7. MATLAB syntaksen

    DEFF Research Database (Denmark)

    Skajaa, Anders; Jørgensen, Jakob Heide

    MATLAB er et matematik-program som fokuserer på anvendelsen af matricer og vektorer. Deraf navnet MATrix LABoratory. Denne bog er en praktisk vejledning i at forstår og anvende MATLAB syntaksen og fungerer som en hurtig genvej til dig, der skal i gang med at anvende MATLAB i forbindelse med fx dit...

  8. Prognostics 101: A tutorial for particle filter-based prognostics algorithm using Matlab

    International Nuclear Information System (INIS)

    An, Dawn; Choi, Joo-Ho; Kim, Nam Ho

    2013-01-01

    This paper presents a Matlab-based tutorial for model-based prognostics, which combines a physical model with observed data to identify model parameters, from which the remaining useful life (RUL) can be predicted. Among many model-based prognostics algorithms, the particle filter is used in this tutorial for parameter estimation of damage or a degradation model. The tutorial is presented using a Matlab script with 62 lines, including detailed explanations. As examples, a battery degradation model and a crack growth model are used to explain the updating process of model parameters, damage progression, and RUL prediction. In order to illustrate the results, the RUL at an arbitrary cycle are predicted in the form of distribution along with the median and 90% prediction interval. This tutorial will be helpful for the beginners in prognostics to understand and use the prognostics method, and we hope it provides a standard of particle filter based prognostics. -- Highlights: ► Matlab-based tutorial for model-based prognostics is presented. ► A battery degradation model and a crack growth model are used as examples. ► The RUL at an arbitrary cycle are predicted using the particle filter

  9. Arduino-Based embedded systems interfacing, simulation, and LabVIEW GUI

    CERN Document Server

    Singh, Rajesh; Singh, Bhupendra; Choudhury, Sushabhan

    2018-01-01

    Arduino is an open-source electronics platform based on easy-to-use hardware and software while LabVIEW is a graphical programming telling how to connect functions and work with a variety of datatypes when constructing applications.This book will help beginners to get started with Arduino-based embedded systems including essential know-how of the programming and interfacing of the devices. Book includes programming and simulation of Arduino-based projects and interfacing with LabVIEW, based on practical case studies. The book comprises of total twenty five chapters with description, working model of LabVIEW and programming with Arduino IDE.

  10. Evaluation of cardiac signals using discrete wavelet transform with MATLAB graphical user interface.

    Science.gov (United States)

    John, Agnes Aruna; Subramanian, Aruna Priyadharshni; Jaganathan, Saravana Kumar; Sethuraman, Balasubramanian

    2015-01-01

    To process the electrocardiogram (ECG) signals using MATLAB-based graphical user interface (GUI) and to classify the signals based on heart rate. The subject condition was identified using R-peak detection based on discrete wavelet transform followed by a Bayes classifier that classifies the ECG signals. The GUI was designed to display the ECG signal plot. Obtained from MIT database 18 patients had normal heart rate and 9 patients had abnormal heart rate; 14.81% of the patients suffered from tachycardia and 18.52% of the patients have bradycardia. The proposed GUI display was found useful to analyze the digitized ECG signal by a non-technical user and may help in diagnostics. Further improvement can be done by employing field programmable gate array for the real time processing of cardiac signals. Copyright © 2015 Cardiological Society of India. Published by Elsevier B.V. All rights reserved.

  11. Development of Graphical User Interface for Finite Element Analysis of Static Loading of a Column using MATLAB

    Directory of Open Access Journals (Sweden)

    Moses Omolayo PETINRIN

    2010-12-01

    Full Text Available In this work, the capability of MATLAB software package to develop graphical user interface (GUI package was demonstrated. A GUI was successfully developed using MATLAB programming language to study the behaviour of a suspended column under uniaxial static loading by solving the numerical model created based on the finite element method (FEM. The comparison between the exact solution from previous researches and the numerical analysis showed good agreement. The column average strain, average stress and average load are equivalent but more accurate to the ones obtained when the whole column is taken as one element (two nodes for one dimensional linear finite element problem. It was established in this work that MATLAB is not only a software package for numerical computation but also for application development.

  12. Problem-based learning in communication systems using MATLAB and Simulink

    CERN Document Server

    Choi, Kwonhue

    2016-01-01

    Designed to help teach and understand communication systems using a classroom-tested, active learning approach. This book covers the basic concepts of signals, and analog and digital communications, to more complex simulations in communication systems. Problem-Based Learning in Communication Systems Using MATLAB and Simulink begins by introducing MATLAB and Simulink to prepare readers who are unfamiliar with these environments in order to tackle projects and exercises included in this book. Discussions on simulation of signals, filter design, sampling and reconstruction, and analog communications are covered next. The book concludes by covering advanced topics such as Viterbi decoding, OFDM and MIMO. In addition, this book contains examples of how to convert waveforms, constructed in simulation, into electric signals. It also includes problems illustrating how to complete actual wireless communications in the band near ultrasonic frequencies. A content-m pping table is included in this book to help instruc...

  13. MATLAB for laser speckle contrast analysis (LASCA): a practice-based approach

    Science.gov (United States)

    Postnikov, Eugene B.; Tsoy, Maria O.; Postnov, Dmitry E.

    2018-04-01

    Laser Speckle Contrast Analysis (LASCA) is one of the most powerful modern methods for revealing blood dynamics. The experimental design and theory for this method are well established, and the computational recipie is often regarded to be trivial. However, the achieved performance and spatial resolution may considerable differ for different implementations. We comprise a minireview of known approaches to the spatial laser speckle contrast data processing and their realization in MATLAB code providing an explicit correspondence to the mathematical representation, a discussion of available implementations. We also present the algorithm based on the 2D Haar wavelet transform, also supplied with the program code. This new method provides an opportunity to introduce horizontal, vertical and diagonal speckle contrasts; it may be used for processing highly anisotropic images of vascular trees. We provide the comparative analysis of the accuracy of vascular pattern detection and the processing times with a special attention to details of the used MATLAB procedures.

  14. Numerical methods in finance and economics a MATLAB-based introduction

    CERN Document Server

    Brandimarte, Paolo

    2006-01-01

    A state-of-the-art introduction to the powerful mathematical and statistical tools used in the field of financeThe use of mathematical models and numerical techniques is a practice employed by a growing number of applied mathematicians working on applications in finance. Reflecting this development, Numerical Methods in Finance and Economics: A MATLAB?-Based Introduction, Second Edition bridges the gap between financial theory and computational practice while showing readers how to utilize MATLAB?--the powerful numerical computing environment--for financial applications.The author provides an essential foundation in finance and numerical analysis in addition to background material for students from both engineering and economics perspectives. A wide range of topics is covered, including standard numerical analysis methods, Monte Carlo methods to simulate systems affected by significant uncertainty, and optimization methods to find an optimal set of decisions.Among this book''s most outstanding features is the...

  15. RenderToolbox3: MATLAB tools that facilitate physically based stimulus rendering for vision research.

    Science.gov (United States)

    Heasly, Benjamin S; Cottaris, Nicolas P; Lichtman, Daniel P; Xiao, Bei; Brainard, David H

    2014-02-07

    RenderToolbox3 provides MATLAB utilities and prescribes a workflow that should be useful to researchers who want to employ graphics in the study of vision and perhaps in other endeavors as well. In particular, RenderToolbox3 facilitates rendering scene families in which various scene attributes and renderer behaviors are manipulated parametrically, enables spectral specification of object reflectance and illuminant spectra, enables the use of physically based material specifications, helps validate renderer output, and converts renderer output to physical units of radiance. This paper describes the design and functionality of the toolbox and discusses several examples that demonstrate its use. We have designed RenderToolbox3 to be portable across computer hardware and operating systems and to be free and open source (except for MATLAB itself). RenderToolbox3 is available at https://github.com/DavidBrainard/RenderToolbox3.

  16. ADVANTAGES OF THE PROGRAM-BASED LOGBOOK SUBMISSION GUI AT JEFFERSON LAB

    Energy Technology Data Exchange (ETDEWEB)

    T. McGuckin

    2006-10-24

    DTlite is a Tcl/Tk script that is used as the primary interface for making entries into Jefferson Lab's electronic logbooks. DTlite was originally written and implemented by a user to simplify submission of entries into Jefferson Lab?s electronic logbook, but has subsequently been maintained and developed by the controls software group. The use of a separate, script-based tool for logbook submissions (as opposed to a web-based submission tool bundled with the logbook database/interface) provides many advantages to the users, as well as creating many challenges to the programmers and maintainers of the electronic logbook system. The paper describes the advantages and challenges of this design model and how they have affected the development lifecycle of the electronic logbook system.

  17. A methodological approach for designing a usable ontology-based GUI in healthcare.

    Science.gov (United States)

    Lasierra, N; Kushniruk, A; Alesanco, A; Borycki, E; García, J

    2013-01-01

    This paper presents a methodological approach to the design and evaluation of an interface for an ontology-based system used for designing care plans for monitoring patients at home. In order to define the care plans, physicians need a tool for creating instances of the ontology and configuring some rules. Our purpose is to develop an interface to allow clinicians to interact with the ontology. Although ontology-driven applications do not necessarily present the ontology in the user interface, it is our hypothesis that showing selected parts of the ontology in a "usable" way could enhance clinician's understanding and make easier the definition of the care plans. Based on prototyping and iterative testing, this methodology combines visualization techniques and usability methods. Preliminary results obtained after a formative evaluation indicate the effectiveness of suggested combination.

  18. GUI BASED REMOTE ON/OFF CONTROL AND MONITORING SINGLE PHASE LAMP USING MICROCONTROLLER

    OpenAIRE

    Mohd Suhaimi B. Sulaiman; Zawawi bin Ismail@ Abdul Wahab; Shaza Rina Bt Sahamir; Nazrul Nadziruddin bin Mohd Zameri; Gopala Krishnan Sekharan Nair; Kamaruzaman Jusoff

    2010-01-01

    Microcontrollers are very popular in electronics and computer-controlled systems worldwide. This paper presents the control of a microcontroller-based system using the computer and explains comprehensively the hardware and software parts of the microcontroller. Peripheral Interface Controller (PIC) software developed by Microchip (MPASM) is used in programming a PIC microcontroller, and Visual Basic is used in programming the user interface. The developed system showed that the auto-switching...

  19. Comparison 3 - 386 MATLAB

    DEFF Research Database (Denmark)

    Jensen, Niels

    1992-01-01

    MATLAB is a C-based general tool for mathematical and engineering calculations with limited capabilities for simulation of non-linear equation systems.......MATLAB is a C-based general tool for mathematical and engineering calculations with limited capabilities for simulation of non-linear equation systems....

  20. Development of a GUI-based RETRAN running environment and its application

    International Nuclear Information System (INIS)

    Kim, K.D.; Jeong, J.J.; Mo, S.Y.; Lee, Y.G.; Lee, C.B.

    2001-01-01

    In order to assist RETRAN users in their input preparation, code execution, and output interpretation, a visual interactive RETRAN running environment (ViRRE) has been developed. ViRRE provides dialog boxes and graphical modules for base input data generation and transient initiation on a user-friendly basis, and special graphical displays to provide an in-depth understanding of the major thermal-hydraulic phenomena during normal and accident conditions for nuclear power plants. This paper presents the main features of ViRRE and an example of its application. (authors)

  1. ERSN-OpenMC, a Java-based GUI for OpenMC Monte Carlo code

    Directory of Open Access Journals (Sweden)

    Jaafar EL Bakkali

    2016-07-01

    Full Text Available OpenMC is a new Monte Carlo transport particle simulation code focused on solving two types of neutronic problems mainly the k-eigenvalue criticality fission source problems and external fixed fission source problems. OpenMC does not have any Graphical User Interface and the creation of one is provided by our java-based application named ERSN-OpenMC. The main feature of this application is to provide to the users an easy-to-use and flexible graphical interface to build better and faster simulations, with less effort and great reliability. Additionally, this graphical tool was developed with several features, as the ability to automate the building process of OpenMC code and related libraries as well as the users are given the freedom to customize their installation of this Monte Carlo code. A full description of the ERSN-OpenMC application is presented in this paper.

  2. Tkinter GUI application development

    CERN Document Server

    Chaudhary, Bhaskar

    2013-01-01

    Practical, real-world example projects. Start with the topics that grab your attention or work through each project in sequence.If you have just started with GUI programming, this book is ideal for you. This book is also great if you are an experienced software developer, scientist, researcher, engineer, student, or hobbyist.

  3. GESearch: An Interactive GUI Tool for Identifying Gene Expression Signature

    Directory of Open Access Journals (Sweden)

    Ning Ye

    2015-01-01

    Full Text Available The huge amount of gene expression data generated by microarray and next-generation sequencing technologies present challenges to exploit their biological meanings. When searching for the coexpression genes, the data mining process is largely affected by selection of algorithms. Thus, it is highly desirable to provide multiple options of algorithms in the user-friendly analytical toolkit to explore the gene expression signatures. For this purpose, we developed GESearch, an interactive graphical user interface (GUI toolkit, which is written in MATLAB and supports a variety of gene expression data files. This analytical toolkit provides four models, including the mean, the regression, the delegate, and the ensemble models, to identify the coexpression genes, and enables the users to filter data and to select gene expression patterns by browsing the display window or by importing knowledge-based genes. Subsequently, the utility of this analytical toolkit is demonstrated by analyzing two sets of real-life microarray datasets from cell-cycle experiments. Overall, we have developed an interactive GUI toolkit that allows for choosing multiple algorithms for analyzing the gene expression signatures.

  4. Design and implementation of PV-based three-phase four-wire ...

    Indian Academy of Sciences (India)

    experimental model was established and results were obtained, which indicated ..... process was based on the maximum membership principle. .... Altas H and Sharaf A M 2007 A Photovoltaic Array Simulation Model for MATLAB Simulink GUI.

  5. Poster - 09: A MATLAB-based Program for Automated Quality Assurance of a Prostate Brachytherapy Ultrasound System

    Energy Technology Data Exchange (ETDEWEB)

    Poon, Justin; Sabondjian, Eric; Sankreacha, Raxa [University of British Columbia, Dept. of Physics and Astronomy, Vancouver, BC (Canada); Trillium Health Partners – Credit Valley Hospital, Peel Regional Cancer Centre, Mississauga, ON, Trillium Health Partners – Credit Valley Hospital, Peel Regional Cancer Centre, Mississauga, ON, Trillium Health Partners – Credit Valley Hospital, Peel Regional Cancer Centre, Mississauga, ON (Canada); University of Toronto, Dept. of Radiation Oncology, Toronto, ON (Canada)

    2016-08-15

    Purpose: A robust Quality Assurance (QA) program is essential for prostate brachytherapy ultrasound systems due to the importance of imaging accuracy during treatment and planning. Task Group 128 of the American Association of Physicists in Medicine has recommended a set of QA tests covering grayscale visibility, depth of penetration, axial and lateral resolution, distance measurement, area measurement, volume measurement, and template/electronic grid alignment. Making manual measurements on the ultrasound system can be slow and inaccurate, so a MATLAB program was developed for automation of the described tests. Methods: Test images were acquired using a BK Medical Flex Focus 400 ultrasound scanner and 8848 transducer with the CIRS Brachytherapy QA Phantom – Model 045A. For each test, the program automatically segments the inputted image(s), makes the appropriate measurements, and indicates if the test passed or failed. The program was tested by analyzing two sets of images, where the measurements from the first set were used as baseline values. Results: The program successfully analyzed the images for each test and determined if any action limits were exceeded. All tests passed – the measurements made by the program were consistent and met the requirements outlined by Task Group 128. Conclusions: The MATLAB program we have developed can be used for automated QA of an ultrasound system for prostate brachytherapy. The GUI provides a user-friendly way to analyze images without the need for any manual measurement, potentially removing intra- and inter-user variability for more consistent results.

  6. Poster - 09: A MATLAB-based Program for Automated Quality Assurance of a Prostate Brachytherapy Ultrasound System

    International Nuclear Information System (INIS)

    Poon, Justin; Sabondjian, Eric; Sankreacha, Raxa

    2016-01-01

    Purpose: A robust Quality Assurance (QA) program is essential for prostate brachytherapy ultrasound systems due to the importance of imaging accuracy during treatment and planning. Task Group 128 of the American Association of Physicists in Medicine has recommended a set of QA tests covering grayscale visibility, depth of penetration, axial and lateral resolution, distance measurement, area measurement, volume measurement, and template/electronic grid alignment. Making manual measurements on the ultrasound system can be slow and inaccurate, so a MATLAB program was developed for automation of the described tests. Methods: Test images were acquired using a BK Medical Flex Focus 400 ultrasound scanner and 8848 transducer with the CIRS Brachytherapy QA Phantom – Model 045A. For each test, the program automatically segments the inputted image(s), makes the appropriate measurements, and indicates if the test passed or failed. The program was tested by analyzing two sets of images, where the measurements from the first set were used as baseline values. Results: The program successfully analyzed the images for each test and determined if any action limits were exceeded. All tests passed – the measurements made by the program were consistent and met the requirements outlined by Task Group 128. Conclusions: The MATLAB program we have developed can be used for automated QA of an ultrasound system for prostate brachytherapy. The GUI provides a user-friendly way to analyze images without the need for any manual measurement, potentially removing intra- and inter-user variability for more consistent results.

  7. Fuzzy logic based control system for fresh water aquaculture: A MATLAB based simulation approach

    Directory of Open Access Journals (Sweden)

    Rana Dinesh Singh

    2015-01-01

    Full Text Available Fuzzy control is regarded as the most widely used application of fuzzy logic. Fuzzy logic is an innovative technology to design solutions for multiparameter and non-linear control problems. One of the greatest advantages of fuzzy control is that it uses human experience and process information obtained from operator rather than a mathematical model for the definition of a control strategy. As a result, it often delivers solutions faster than conventional control design techniques. The proposed system is an attempt to apply fuzzy logic techniques to predict the stress factor on the fish, based on line data and rule base generated using domain expert. The proposed work includes a use of Data acquisition system, an interfacing device for on line parameter acquisition and analysis, fuzzy logic controller (FLC for inferring the stress factor. The system takes stress parameters on the fish as inputs, fuzzified by using FLC with knowledge base rules and finally provides single output. All the parameters are controlled and calibrated by the fuzzy logic toolbox and MATLAB programming.

  8. Co-simulation of Six DOF Wire Driven Parallel Mechanism Based on ADAMS and Matlab

    Directory of Open Access Journals (Sweden)

    Tang Aofei

    2015-01-01

    Full Text Available The dynamic model of the 6 DOF Wire Driven Parallel Mechanism (WDPM system is introduced. Based on MATLAB system, the simulation of the inverse dynamic model is achieved. According to the simulation result, the mechanical model for the WDPM system is reasonable. Using ADAMS system, the dynamic model of the virtual prototype is verified by the simulation analysis. The combined control model based on ADAMS/Simulink is derived. The WDPM control system is designed with MATLAB/Simulink. The torque control method is selected for the outer ring and the PD control method for the inner ring. Combined with the ADAMS control model and control law design, the interactive simulation analysis of the WDPM system is completed. According to the simulation results of the spatial circle tracking and line tracking at the end of the moving platform, the tracking error can be reduced by the designed control algorithm. The minimum tracking error is 0.2 mm to 0.3 mm. Therefore, the theoretical foundation for designing hardware systems of the WDPM control system is established.

  9. MOSES: A Matlab-based open-source stochastic epidemic simulator.

    Science.gov (United States)

    Varol, Huseyin Atakan

    2016-08-01

    This paper presents an open-source stochastic epidemic simulator. Discrete Time Markov Chain based simulator is implemented in Matlab. The simulator capable of simulating SEQIJR (susceptible, exposed, quarantined, infected, isolated and recovered) model can be reduced to simpler models by setting some of the parameters (transition probabilities) to zero. Similarly, it can be extended to more complicated models by editing the source code. It is designed to be used for testing different control algorithms to contain epidemics. The simulator is also designed to be compatible with a network based epidemic simulator and can be used in the network based scheme for the simulation of a node. Simulations show the capability of reproducing different epidemic model behaviors successfully in a computationally efficient manner.

  10. NetBeans GUI Builder

    OpenAIRE

    Pusiankova, Tatsiana

    2009-01-01

    This work aims at making readers familiar with the powerful tool NetBeans IDE GUI Builder and helping them make their first steps to creation of their own graphical user interface in the Java programming language. The work includes theoretical description of NetBeans IDE GUI Builder, its most important characteristics and peculiarities and also a set of practical instructions that will help readers in creation of their first GUI. The readers will be introduced to the environment of this tool ...

  11. Cosmology with MATLAB

    CERN Document Server

    Green, Dan

    2016-01-01

    This volume makes explicit use of the synergy between cosmology and high energy physics, for example, supersymmetry and dark matter, or nucleosynthesis and the baryon-to-photon ratio. In particular the exciting possible connection between the recently discovered Higgs scalar and the scalar field responsible for inflation is explored.The recent great advances in the accuracy of the basic cosmological parameters is exploited in that no free scale parameters such as h appear, rather the basic calculations are done numerically using all sources of energy density simultaneously. Scripts are provided that allow the reader to calculate exact results for the basic parameters. Throughout MATLAB tools such as symbolic math, numerical solutions, plots and 'movies' of the dynamical evolution of systems are used. The GUI package is also shown as an example of the real time manipulation of parameters which is available to the reader.All the MATLAB scripts are made available to the reader to explore examples of the uses of ...

  12. MATLAB Simulation of Gradient-Based Neural Network for Online Matrix Inversion

    Science.gov (United States)

    Zhang, Yunong; Chen, Ke; Ma, Weimu; Li, Xiao-Dong

    This paper investigates the simulation of a gradient-based recurrent neural network for online solution of the matrix-inverse problem. Several important techniques are employed as follows to simulate such a neural system. 1) Kronecker product of matrices is introduced to transform a matrix-differential-equation (MDE) to a vector-differential-equation (VDE); i.e., finally, a standard ordinary-differential-equation (ODE) is obtained. 2) MATLAB routine "ode45" is introduced to solve the transformed initial-value ODE problem. 3) In addition to various implementation errors, different kinds of activation functions are simulated to show the characteristics of such a neural network. Simulation results substantiate the theoretical analysis and efficacy of the gradient-based neural network for online constant matrix inversion.

  13. MATLAB matrix algebra

    CERN Document Server

    Pérez López, César

    2014-01-01

    MATLAB is a high-level language and environment for numerical computation, visualization, and programming. Using MATLAB, you can analyze data, develop algorithms, and create models and applications. The language, tools, and built-in math functions enable you to explore multiple approaches and reach a solution faster than with spreadsheets or traditional programming languages, such as C/C++ or Java. MATLAB Matrix Algebra introduces you to the MATLAB language with practical hands-on instructions and results, allowing you to quickly achieve your goals. Starting with a look at symbolic and numeric variables, with an emphasis on vector and matrix variables, you will go on to examine functions and operations that support vectors and matrices as arguments, including those based on analytic parent functions. Computational methods for finding eigenvalues and eigenvectors of matrices are detailed, leading to various matrix decompositions. Applications such as change of bases, the classification of quadratic forms and ...

  14. A MATLAB-based graphical user interface for the identification of muscular activations from surface electromyography signals.

    Science.gov (United States)

    Mengarelli, Alessandro; Cardarelli, Stefano; Verdini, Federica; Burattini, Laura; Fioretti, Sandro; Di Nardo, Francesco

    2016-08-01

    In this paper a graphical user interface (GUI) built in MATLAB® environment is presented. This interactive tool has been developed for the analysis of superficial electromyography (sEMG) signals and in particular for the assessment of the muscle activation time intervals. After the signal import, the tool performs a first analysis in a totally user independent way, providing a reliable computation of the muscular activation sequences. Furthermore, the user has the opportunity to modify each parameter of the on/off identification algorithm implemented in the presented tool. The presence of an user-friendly GUI allows the immediate evaluation of the effects that the modification of every single parameter has on the activation intervals recognition, through the real-time updating and visualization of the muscular activation/deactivation sequences. The possibility to accept the initial signal analysis or to modify the on/off identification with respect to each considered signal, with a real-time visual feedback, makes this GUI-based tool a valuable instrument in clinical, research applications and also in an educational perspective.

  15. Based on matlab 3d visualization programming in the application of the uranium exploration

    International Nuclear Information System (INIS)

    Qi Jianquan

    2012-01-01

    Combined geological theory, geophysical curve and Matlab programming three dimensional visualization applied to the production of uranium exploration. With a simple Matlab programming, numerical processing and graphical visualization of convenient features, and effective in identifying ore bodies, recourse to ore, ore body delineation of the scope of analysis has played the role of sedimentary environment. (author)

  16. GRace: a MATLAB-based application for fitting the discrimination-association model.

    Science.gov (United States)

    Stefanutti, Luca; Vianello, Michelangelo; Anselmi, Pasquale; Robusto, Egidio

    2014-10-28

    The Implicit Association Test (IAT) is a computerized two-choice discrimination task in which stimuli have to be categorized as belonging to target categories or attribute categories by pressing, as quickly and accurately as possible, one of two response keys. The discrimination association model has been recently proposed for the analysis of reaction time and accuracy of an individual respondent to the IAT. The model disentangles the influences of three qualitatively different components on the responses to the IAT: stimuli discrimination, automatic association, and termination criterion. The article presents General Race (GRace), a MATLAB-based application for fitting the discrimination association model to IAT data. GRace has been developed for Windows as a standalone application. It is user-friendly and does not require any programming experience. The use of GRace is illustrated on the data of a Coca Cola-Pepsi Cola IAT, and the results of the analysis are interpreted and discussed.

  17. Low cost MATLAB-based pulse oximeter for deployment in research and development applications.

    Science.gov (United States)

    Shokouhian, M; Morling, R C S; Kale, I

    2013-01-01

    Problems such as motion artifact and effects of ambient lights have forced developers to design different signal processing techniques and algorithms to increase the reliability and accuracy of the conventional pulse oximeter device. To evaluate the robustness of these techniques, they are applied either to recorded data or are implemented on chip to be applied to real-time data. Recorded data is the most common method of evaluating however it is not as reliable as real-time measurements. On the other hand, hardware implementation can be both expensive and time consuming. This paper presents a low cost MATLAB-based pulse oximeter that can be used for rapid evaluation of newly developed signal processing techniques and algorithms. Flexibility to apply different signal processing techniques, providing both processed and unprocessed data along with low implementation cost are the important features of this design which makes it ideal for research and development purposes, as well as commercial, hospital and healthcare application.

  18. PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI.

    Science.gov (United States)

    Lee, Jonas; Kim, Sung Hou

    2009-04-01

    The Protein Data Bank file format is the format most widely used by protein crystallographers and biologists to disseminate and manipulate protein structures. Despite this, there are few user-friendly software packages available to efficiently edit and extract raw information from PDB files. This limitation often leads to many protein crystallographers wasting significant time manually editing PDB files. PDB Editor, written in Java Swing GUI, allows the user to selectively search, select, extract and edit information in parallel. Furthermore, the program is a stand-alone application written in Java which frees users from the hassles associated with platform/operating system-dependent installation and usage. PDB Editor can be downloaded from http://sourceforge.net/projects/pdbeditorjl/.

  19. OXlearn: a new MATLAB-based simulation tool for connectionist models.

    Science.gov (United States)

    Ruh, Nicolas; Westermann, Gert

    2009-11-01

    OXlearn is a free, platform-independent MATLAB toolbox in which standard connectionist neural network models can be set up, run, and analyzed by means of a user-friendly graphical interface. Due to its seamless integration with the MATLAB programming environment, the inner workings of the simulation tool can be easily inspected and/or extended using native MATLAB commands or components. This combination of usability, transparency, and extendability makes OXlearn an efficient tool for the implementation of basic research projects or the prototyping of more complex research endeavors, as well as for teaching. Both the MATLAB toolbox and a compiled version that does not require access to MATLAB can be downloaded from http://psych.brookes.ac.uk/oxlearn/.

  20. PreSurgMapp: a MATLAB Toolbox for Presurgical Mapping of Eloquent Functional Areas Based on Task-Related and Resting-State Functional MRI.

    Science.gov (United States)

    Huang, Huiyuan; Ding, Zhongxiang; Mao, Dewang; Yuan, Jianhua; Zhu, Fangmei; Chen, Shuda; Xu, Yan; Lou, Lin; Feng, Xiaoyan; Qi, Le; Qiu, Wusi; Zhang, Han; Zang, Yu-Feng

    2016-10-01

    The main goal of brain tumor surgery is to maximize tumor resection while minimizing the risk of irreversible postoperative functional sequelae. Eloquent functional areas should be delineated preoperatively, particularly for patients with tumors near eloquent areas. Functional magnetic resonance imaging (fMRI) is a noninvasive technique that demonstrates great promise for presurgical planning. However, specialized data processing toolkits for presurgical planning remain lacking. Based on several functions in open-source software such as Statistical Parametric Mapping (SPM), Resting-State fMRI Data Analysis Toolkit (REST), Data Processing Assistant for Resting-State fMRI (DPARSF) and Multiple Independent Component Analysis (MICA), here, we introduce an open-source MATLAB toolbox named PreSurgMapp. This toolbox can reveal eloquent areas using comprehensive methods and various complementary fMRI modalities. For example, PreSurgMapp supports both model-based (general linear model, GLM, and seed correlation) and data-driven (independent component analysis, ICA) methods and processes both task-based and resting-state fMRI data. PreSurgMapp is designed for highly automatic and individualized functional mapping with a user-friendly graphical user interface (GUI) for time-saving pipeline processing. For example, sensorimotor and language-related components can be automatically identified without human input interference using an effective, accurate component identification algorithm using discriminability index. All the results generated can be further evaluated and compared by neuro-radiologists or neurosurgeons. This software has substantial value for clinical neuro-radiology and neuro-oncology, including application to patients with low- and high-grade brain tumors and those with epilepsy foci in the dominant language hemisphere who are planning to undergo a temporal lobectomy.

  1. Educational Software for Interference and Optical Diffraction Analysis in Fresnel and Fraunhofer Regions Based on MATLAB GUIs and the FDTD Method

    Science.gov (United States)

    Frances, J.; Perez-Molina, M.; Bleda, S.; Fernandez, E.; Neipp, C.; Belendez, A.

    2012-01-01

    Interference and diffraction of light are elementary topics in optics. The aim of the work presented here is to develop an accurate and cheap optical-system simulation software that provides a virtual laboratory for studying the effects of propagation in both time and space for the near- and far-field regions. In laboratory sessions, this software…

  2. Matlab based Toolkits used to Interface with Optical Design Software for NASA's James Webb Space Telescope

    Science.gov (United States)

    Howard, Joseph

    2007-01-01

    The viewgraph presentation provides an introduction to the James Webb Space Telescope (JWST). The first part provides a brief overview of Matlab toolkits including CodeV, OSLO, and Zemax Toolkits. The toolkit overview examines purpose, layout, how Matlab gets data from CodeV, function layout, and using cvHELP. The second part provides examples of use with JWST, including wavefront sensitivities and alignment simulations.

  3. Optimization design of wind turbine drive train based on Matlab genetic algorithm toolbox

    International Nuclear Information System (INIS)

    Li, R N; Liu, X; Liu, S J

    2013-01-01

    In order to ensure the high efficiency of the whole flexible drive train of the front-end speed adjusting wind turbine, the working principle of the main part of the drive train is analyzed. As critical parameters, rotating speed ratios of three planetary gear trains are selected as the research subject. The mathematical model of the torque converter speed ratio is established based on these three critical variable quantity, and the effect of key parameters on the efficiency of hydraulic mechanical transmission is analyzed. Based on the torque balance and the energy balance, refer to hydraulic mechanical transmission characteristics, the transmission efficiency expression of the whole drive train is established. The fitness function and constraint functions are established respectively based on the drive train transmission efficiency and the torque converter rotating speed ratio range. And the optimization calculation is carried out by using MATLAB genetic algorithm toolbox. The optimization method and results provide an optimization program for exact match of wind turbine rotor, gearbox, hydraulic mechanical transmission, hydraulic torque converter and synchronous generator, ensure that the drive train work with a high efficiency, and give a reference for the selection of the torque converter and hydraulic mechanical transmission

  4. Optimization design of wind turbine drive train based on Matlab genetic algorithm toolbox

    Science.gov (United States)

    Li, R. N.; Liu, X.; Liu, S. J.

    2013-12-01

    In order to ensure the high efficiency of the whole flexible drive train of the front-end speed adjusting wind turbine, the working principle of the main part of the drive train is analyzed. As critical parameters, rotating speed ratios of three planetary gear trains are selected as the research subject. The mathematical model of the torque converter speed ratio is established based on these three critical variable quantity, and the effect of key parameters on the efficiency of hydraulic mechanical transmission is analyzed. Based on the torque balance and the energy balance, refer to hydraulic mechanical transmission characteristics, the transmission efficiency expression of the whole drive train is established. The fitness function and constraint functions are established respectively based on the drive train transmission efficiency and the torque converter rotating speed ratio range. And the optimization calculation is carried out by using MATLAB genetic algorithm toolbox. The optimization method and results provide an optimization program for exact match of wind turbine rotor, gearbox, hydraulic mechanical transmission, hydraulic torque converter and synchronous generator, ensure that the drive train work with a high efficiency, and give a reference for the selection of the torque converter and hydraulic mechanical transmission.

  5. A Matlab-Based Graphical User Interface for Simulation and Control Design of a Hydrogen Mixer

    Science.gov (United States)

    Richter, Hanz; Figueroa, Fernando

    2003-01-01

    A Graphical User Interface (GUI) that facilitates prediction and control design tasks for a propellant mixer is described. The Hydrogen mixer is used in rocket test stand operations at the NASA John C. Stennis Space Center. The mixer injects gaseous hydrogen (GH2) into a stream of liquid hydrogen (LH2) to obtain a combined flow with desired thermodynamic properties. The flows of GH2 and LH2 into the mixer are regulated by two control valves, and a third control valve is installed at the exit of the mixer to regulate the combined flow. The three valves may be simultaneously operated in order to achieve any desired combination of total flow, exit temperature and mixer pressure within the range of operation. The mixer, thus, constitutes a three-input, three-output system. A mathematical model of the mixer has been obtained and validated with experimental data. The GUI presented here uses the model to predict mixer response under diverse conditions.

  6. A Matlab user interface for the statistically assisted fluid registration algorithm and tensor-based morphometry

    Science.gov (United States)

    Yepes-Calderon, Fernando; Brun, Caroline; Sant, Nishita; Thompson, Paul; Lepore, Natasha

    2015-01-01

    Tensor-Based Morphometry (TBM) is an increasingly popular method for group analysis of brain MRI data. The main steps in the analysis consist of a nonlinear registration to align each individual scan to a common space, and a subsequent statistical analysis to determine morphometric differences, or difference in fiber structure between groups. Recently, we implemented the Statistically-Assisted Fluid Registration Algorithm or SAFIRA,1 which is designed for tracking morphometric differences among populations. To this end, SAFIRA allows the inclusion of statistical priors extracted from the populations being studied as regularizers in the registration. This flexibility and degree of sophistication limit the tool to expert use, even more so considering that SAFIRA was initially implemented in command line mode. Here, we introduce a new, intuitive, easy to use, Matlab-based graphical user interface for SAFIRA's multivariate TBM. The interface also generates different choices for the TBM statistics, including both the traditional univariate statistics on the Jacobian matrix, and comparison of the full deformation tensors.2 This software will be freely disseminated to the neuroimaging research community.

  7. A Matlab-Based Testbed for Integration, Evaluation and Comparison of Heterogeneous Stereo Vision Matching Algorithms

    Directory of Open Access Journals (Sweden)

    Raul Correal

    2016-11-01

    Full Text Available Stereo matching is a heavily researched area with a prolific published literature and a broad spectrum of heterogeneous algorithms available in diverse programming languages. This paper presents a Matlab-based testbed that aims to centralize and standardize this variety of both current and prospective stereo matching approaches. The proposed testbed aims to facilitate the application of stereo-based methods to real situations. It allows for configuring and executing algorithms, as well as comparing results, in a fast, easy and friendly setting. Algorithms can be combined so that a series of processes can be chained and executed consecutively, using the output of a process as input for the next; some additional filtering and image processing techniques have been included within the testbed for this purpose. A use case is included to illustrate how these processes are sequenced and its effect on the results for real applications. The testbed has been conceived as a collaborative and incremental open-source project, where its code is accessible and modifiable, with the objective of receiving contributions and releasing future versions to include new algorithms and features. It is currently available online for the research community.

  8. ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Kim Taeho

    2010-09-01

    Full Text Available Abstract Background There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited in their ability to handle very large amounts of sequences because the system lacks a scalable high-performance computing (HPC environment with a greatly extended data storage capacity. Results We designed ClustalXeed, a software system for multiple sequence alignment with incremental improvements over previous versions of the ClustalX and ClustalW-MPI software. The primary advantage of ClustalXeed over other multiple sequence alignment software is its ability to align a large family of protein or nucleic acid sequences. To solve the conventional memory-dependency problem, ClustalXeed uses both physical random access memory (RAM and a distributed file-allocation system for distance matrix construction and pair-align computation. The computation efficiency of disk-storage system was markedly improved by implementing an efficient load-balancing algorithm, called "idle node-seeking task algorithm" (INSTA. The new editing option and the graphical user interface (GUI provide ready access to a parallel-computing environment for users who seek fast and easy alignment of large DNA and protein sequence sets. Conclusions ClustalXeed can now compute a large volume of biological sequence data sets, which were not tractable in any other parallel or single MSA program. The main developments include: 1 the ability to tackle larger sequence alignment problems than possible with previous systems through markedly improved storage-handling capabilities. 2 Implementing an efficient task load-balancing algorithm, INSTA, which improves overall processing times for multiple sequence alignment with input sequences of non-uniform length. 3 Support for both single PC and distributed cluster systems.

  9. Op-Ug TD Optimizer Tool Based on Matlab Code to Find Transition Depth From Open Pit to Block Caving / Narzędzie Optymalizacyjne Oparte O Kod Matlab Wykorzystane Do Określania Głębokości Przejściowej Od Wydobycia Odkrywkowego Do Wybierania Komorami

    Science.gov (United States)

    Bakhtavar, E.

    2015-09-01

    In this study, transition from open pit to block caving has been considered as a challenging problem. For this purpose, the linear integer programing code of Matlab was initially developed on the basis of the binary integer model proposed by Bakhtavar et al (2012). Then a program based on graphical user interface (GUI) was set up and named "Op-Ug TD Optimizer". It is a beneficial tool for simple application of the model in all situations where open pit is considered together with block caving method for mining an ore deposit. Finally, Op-Ug TD Optimizer has been explained step by step through solving the transition from open pit to block caving problem of a case ore deposit. W pracy tej rozważano skomplikowane zagadnienie przejścia od wybierania odkrywkowego do komorowego. W tym celu opracowano kod programowania liniowego w środowisku MATLAB w oparciu o model liczb binarnych zaproponowany przez Bakhtavara (2012). Następnie opracowano program z wykorzystujący graficzny interfejs użytkownika o nazwie Optymalizator Op-Ug TD. Jest to niezwykle cenne narzędzie umożliwiające stosowanie modelu dla wszystkich warunków w sytuacjach gdy rozważamy prowadzenie wydobycia metodą odkrywkową oraz wydobycie komorowe przy eksploatacji złóż rud żelaza. W końcowej części pracy podano szczegółową instrukcję stosowanie programu Optymalizator na przedstawionym przykładzie przejścia od wydobycia rud żelaza metodami odkrywkowymi poprzez wydobycie komorami.

  10. MATLAB Simulation of UPQC for Power Quality Mitigation Using an Ant Colony Based Fuzzy Control Technique.

    Science.gov (United States)

    Kumarasabapathy, N; Manoharan, P S

    2015-01-01

    This paper proposes a fuzzy logic based new control scheme for the Unified Power Quality Conditioner (UPQC) for minimizing the voltage sag and total harmonic distortion in the distribution system consequently to improve the power quality. UPQC is a recent power electronic module which guarantees better power quality mitigation as it has both series-active and shunt-active power filters (APFs). The fuzzy logic controller has recently attracted a great deal of attention and possesses conceptually the quality of the simplicity by tackling complex systems with vagueness and ambiguity. In this research, the fuzzy logic controller is utilized for the generation of reference signal controlling the UPQC. To enable this, a systematic approach for creating the fuzzy membership functions is carried out by using an ant colony optimization technique for optimal fuzzy logic control. An exhaustive simulation study using the MATLAB/Simulink is carried out to investigate and demonstrate the performance of the proposed fuzzy logic controller and the simulation results are compared with the PI controller in terms of its performance in improving the power quality by minimizing the voltage sag and total harmonic distortion.

  11. MATLAB Simulation of UPQC for Power Quality Mitigation Using an Ant Colony Based Fuzzy Control Technique

    Directory of Open Access Journals (Sweden)

    N. Kumarasabapathy

    2015-01-01

    Full Text Available This paper proposes a fuzzy logic based new control scheme for the Unified Power Quality Conditioner (UPQC for minimizing the voltage sag and total harmonic distortion in the distribution system consequently to improve the power quality. UPQC is a recent power electronic module which guarantees better power quality mitigation as it has both series-active and shunt-active power filters (APFs. The fuzzy logic controller has recently attracted a great deal of attention and possesses conceptually the quality of the simplicity by tackling complex systems with vagueness and ambiguity. In this research, the fuzzy logic controller is utilized for the generation of reference signal controlling the UPQC. To enable this, a systematic approach for creating the fuzzy membership functions is carried out by using an ant colony optimization technique for optimal fuzzy logic control. An exhaustive simulation study using the MATLAB/Simulink is carried out to investigate and demonstrate the performance of the proposed fuzzy logic controller and the simulation results are compared with the PI controller in terms of its performance in improving the power quality by minimizing the voltage sag and total harmonic distortion.

  12. BOLDSync: a MATLAB-based toolbox for synchronized stimulus presentation in functional MRI.

    Science.gov (United States)

    Joshi, Jitesh; Saharan, Sumiti; Mandal, Pravat K

    2014-02-15

    Precise and synchronized presentation of paradigm stimuli in functional magnetic resonance imaging (fMRI) is central to obtaining accurate information about brain regions involved in a specific task. In this manuscript, we present a new MATLAB-based toolbox, BOLDSync, for synchronized stimulus presentation in fMRI. BOLDSync provides a user friendly platform for design and presentation of visual, audio, as well as multimodal audio-visual (AV) stimuli in functional imaging experiments. We present simulation experiments that demonstrate the millisecond synchronization accuracy of BOLDSync, and also illustrate the functionalities of BOLDSync through application to an AV fMRI study. BOLDSync gains an advantage over other available proprietary and open-source toolboxes by offering a user friendly and accessible interface that affords both precision in stimulus presentation and versatility across various types of stimulus designs and system setups. BOLDSync is a reliable, efficient, and versatile solution for synchronized stimulus presentation in fMRI study. Copyright © 2013 Elsevier B.V. All rights reserved.

  13. TecDEM: A MATLAB Based Toolbox for understanding Tectonics from Digital Elevation Models

    Science.gov (United States)

    Shahzad, F.; Mahmood, S. A.; Gloaguen, R.

    2009-04-01

    TecDEM is a MATLAB based tool box for understanding the tectonics from digital elevation models (DEMs) of any area. These DEMs can be derived from data of any spatial resolution (Low, medium and High). In the first step we extract drainage network from the DEMs using flow grid approach. Drainage network is a group of streams having elevation and catchment area information as a function of spatial locations. We implement an array of stream structure to study this drainage network. Knickpoints can be identified on each stream of the drainage network by a graphical user interface and are helpful for understanding stream morphology. Stream profile analysis in steady state condition is applied on all streams to calculate geomorphic parameters and regional uplift rates. Hack index is calculated for all the profiles at a certain interval and over the change of knickpoints. Reports menu of this tool box generates detailed statistics report, complete tabulated report, graphical output of each analyzed stream profile and Hack index profile. All the calculated values are part of stream structure and is saved as .mat file for later use with this tool box. The spatial distribution of geomorphic parameters, uplift rates and knickpoints are exported as a shape files for visualization in professional GIS software. We test this tool box on DEMs from different tectonic settings worldwide and received verifiable results with other studies.

  14. [Landmark-based automatic registration of serial cross-sectional images of Chinese digital human using Photoshop and Matlab software].

    Science.gov (United States)

    Su, Xiu-yun; Pei, Guo-xian; Yu, Bin; Hu, Yan-ling; Li, Jin; Huang, Qian; Li, Xu; Zhang, Yuan-zhi

    2007-12-01

    This paper describes automatic registration of the serial cross-sectional images of Chinese digital human by projective registration method based on the landmarks using the commercially available software Photoshop and Matlab. During cadaver embedment for acquisition of the Chinese digital human images, 4 rods were placed parallel to the vertical axis of the frozen cadaver to allow orientation. Projective distortion of the rod positions on the cross-sectional images was inevitable due to even slight changes of the relative position of the camera. The original cross-sectional images were first processed using Photoshop software firstly to obtain the images of the orientation rods, and the centroid coordinate of every rod image was acquired with Matlab software. With the average coordinate value of the rods as the fiducial point, two-dimensional projective transformation coefficient of each image was determined. Projective transformation was then carried out and projective distortion from each original serial image was eliminated. The rectified cross-sectional images were again processed using Photoshop to obtain the image of the first orientation rod, the coordinate value of first rod image was calculated using Matlab software, and the cross-sectional images were cut into images of the same size according to the first rod spatial coordinate, to achieve automatic registration of the serial cross-sectional images. sing Photoshop and Matlab softwares, projective transformation can accurately accomplish the image registration for the serial images with simpler calculation processes and easier computer processing.

  15. Computer Based Learning in an Undergraduate Physics Laboratory: Interfacing and Instrument Control Using Matlab

    Science.gov (United States)

    Sharp, J. S.; Glover, P. M.; Moseley, W.

    2007-01-01

    In this paper we describe the recent changes to the curriculum of the second year practical laboratory course in the School of Physics and Astronomy at the University of Nottingham. In particular, we describe how Matlab has been implemented as a teaching tool and discuss both its pedagogical advantages and disadvantages in teaching undergraduate…

  16. PFA toolbox: a MATLAB tool for Metabolic Flux Analysis.

    Science.gov (United States)

    Morales, Yeimy; Bosque, Gabriel; Vehí, Josep; Picó, Jesús; Llaneras, Francisco

    2016-07-11

    Metabolic Flux Analysis (MFA) is a methodology that has been successfully applied to estimate metabolic fluxes in living cells. However, traditional frameworks based on this approach have some limitations, particularly when measurements are scarce and imprecise. This is very common in industrial environments. The PFA Toolbox can be used to face those scenarios. Here we present the PFA (Possibilistic Flux Analysis) Toolbox for MATLAB, which simplifies the use of Interval and Possibilistic Metabolic Flux Analysis. The main features of the PFA Toolbox are the following: (a) It provides reliable MFA estimations in scenarios where only a few fluxes can be measured or those available are imprecise. (b) It provides tools to easily plot the results as interval estimates or flux distributions. (c) It is composed of simple functions that MATLAB users can apply in flexible ways. (d) It includes a Graphical User Interface (GUI), which provides a visual representation of the measurements and their uncertainty. (e) It can use stoichiometric models in COBRA format. In addition, the PFA Toolbox includes a User's Guide with a thorough description of its functions and several examples. The PFA Toolbox for MATLAB is a freely available Toolbox that is able to perform Interval and Possibilistic MFA estimations.

  17. TEVA-SPOT-GUI - Containing Preliminary Flow Model

    Data.gov (United States)

    U.S. Environmental Protection Agency — This ZIP file contains the developmental, test version of TEVA-SPOT-GUI's Flow Model. The Flow Model is a new, event based water quality algorithm for EPANET. The...

  18. Developing a MATLAB(registered)-Based Tool for Visualization and Transformation

    Science.gov (United States)

    Anderton, Blake J.

    2003-01-01

    An important step in the structural design and development of spacecraft is the experimental identification of a structure s modal characteristics, such as its natural frequencies and modes of vibration. These characteristics are vital to developing a representative model of any given structure or analyzing the range of input frequencies that can be handled by a particular structure. When setting up such a representative model of a structure, careful measurements using precision equipment (such as accelerometers and instrumented hammers) must be made on many individual points of the structure in question. The coordinate location of each data point is used to construct a wireframe geometric model of the structure. Response measurements obtained from the accelerometers is used to generate the modal shapes of the particular structure. Graphically, this is displayed as a combination of the ways a structure will ideally respond to a specified force input. Two types of models of the tested structure are often used in modal analysis: an analytic model showing expected behavior of the structure, and an experimental model showing measured results due to observed phenomena. To evaluate the results from the experimental model, a comparison of analytic and experimental results must be made between the two models. However, comparisons between these two models become difficult when the two coordinate orientations differ in a manner such that results are displayed in an unclear fashion. Such a problem proposes the need for a tool that not only communicates a graphical image of a structure s wireframe geometry based on various measurement locations (called nodes), but also allows for a type of transformation of the image s coordinate geometry so that a model s coordinate orientation is made to match the orientation of another model. Such a tool should also be designed so that it is able to construct coordinate geometry based on many different listings of node locations and is able

  19. ‘PhysTrack’: a Matlab based environment for video tracking of kinematics in the physics laboratory

    Science.gov (United States)

    Umar Hassan, Muhammad; Sabieh Anwar, Muhammad

    2017-07-01

    In the past two decades, several computer software tools have been developed to investigate the motion of moving bodies in physics laboratories. In this article we report a Matlab based video tracking library, PhysTrack, primarily designed to investigate kinematics. We compare PhysTrack with other commonly available video tracking tools and outline its salient features. The general methodology of the whole video tracking process is described with a step by step explanation of several functionalities. Furthermore, results of some real physics experiments are also provided to demonstrate the working of the automated video tracking, data extraction, data analysis and presentation tools that come with this development environment. We believe that PhysTrack will be valuable for the large community of physics teachers and students already employing Matlab.

  20. Matlab/Simulink Implementation of Wave-based Models for Microstrip Structures utilizing Short-circuited and Opened Stubs

    Directory of Open Access Journals (Sweden)

    Biljana P. Stošić

    2011-12-01

    Full Text Available This paper describes modeling and analyzing procedures for microstrip filters based on use of one-dimensional wave digital approach. Different filter structures are observed. One filter is based on quarter-wave length short-circuited stubs and connecting transmission lines. The other one is based on cross-junction opened stubs. Frequency responses are obtained by direct analysis of the block-based networks formed in Simulink toolbox of MATLAB environment. This wave-based method allows an accurate and efficient analysis of different microwave structures.

  1. The GMT/MATLAB Toolbox

    Science.gov (United States)

    Wessel, Paul; Luis, Joaquim F.

    2017-02-01

    The GMT/MATLAB toolbox is a basic interface between MATLAB® (or Octave) and GMT, the Generic Mapping Tools, which allows MATLAB users full access to all GMT modules. Data may be passed between the two programs using intermediate MATLAB structures that organize the metadata needed; these are produced when GMT modules are run. In addition, standard MATLAB matrix data can be used directly as input to GMT modules. The toolbox improves interoperability between two widely used tools in the geosciences and extends the capability of both tools: GMT gains access to the powerful computational capabilities of MATLAB while the latter gains the ability to access specialized gridding algorithms and can produce publication-quality PostScript-based illustrations. The toolbox is available on all platforms and may be downloaded from the GMT website.

  2. Modelling and Simulation Based on Matlab/Simulink: A Press Mechanism

    International Nuclear Information System (INIS)

    Halicioglu, R; Dulger, L C; Bozdana, A T

    2014-01-01

    In this study, design and kinematic analysis of a crank-slider mechanism for a crank press is studied. The crank-slider mechanism is the commonly applied one as direct and indirect drive alternatives in practice. Since inexpensiveness, flexibility and controllability are getting more and more important in many industrial applications especially in automotive industry, a crank press with servo actuator (servo crank press) is taken as an application. Design and kinematic analysis of representative mechanism is presented with geometrical analysis for the inverse kinematic of the mechanism by using desired motion concept of slider. The mechanism is modelled in MATLAB/Simulink platform. The simulation results are presented herein

  3. Modelling and Simulation Based on Matlab/Simulink: A Press Mechanism

    Science.gov (United States)

    Halicioglu, R.; Dulger, L. C.; Bozdana, A. T.

    2014-03-01

    In this study, design and kinematic analysis of a crank-slider mechanism for a crank press is studied. The crank-slider mechanism is the commonly applied one as direct and indirect drive alternatives in practice. Since inexpensiveness, flexibility and controllability are getting more and more important in many industrial applications especially in automotive industry, a crank press with servo actuator (servo crank press) is taken as an application. Design and kinematic analysis of representative mechanism is presented with geometrical analysis for the inverse kinematic of the mechanism by using desired motion concept of slider. The mechanism is modelled in MATLAB/Simulink platform. The simulation results are presented herein.

  4. MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations.

    Science.gov (United States)

    Vergara-Perez, Sandra; Marucho, Marcelo

    2016-01-01

    One of the most used and efficient approaches to compute electrostatic properties of biological systems is to numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve the PB equation for molecules in aqueous electrolyte solutions. Most of these software packages are useful for scientists with specialized training and expertise in computational biophysics. However, the user is usually required to manually take several important choices, depending on the complexity of the biological system, to successfully obtain the numerical solution of the PB equation. This may become an obstacle for researchers, experimentalists, even students with no special training in computational methodologies. Aiming to overcome this limitation, in this article we present MPBEC, a free, cross-platform, open-source software that provides non-experts in the field an easy and efficient way to perform biomolecular electrostatic calculations on single processor computers. MPBEC is a Matlab script based on the Adaptative Poisson Boltzmann Solver, one of the most popular approaches used to solve the PB equation. MPBEC does not require any user programming, text editing or extensive statistical skills, and comes with detailed user-guide documentation. As a unique feature, MPBEC includes a useful graphical user interface (GUI) application which helps and guides users to configure and setup the optimal parameters and approximations to successfully perform the required biomolecular electrostatic calculations. The GUI also incorporates visualization tools to facilitate users pre- and post- analysis of structural and electrical properties of biomolecules.

  5. MPBEC, a Matlab Program for Biomolecular Electrostatic Calculations

    Science.gov (United States)

    Vergara-Perez, Sandra; Marucho, Marcelo

    2016-01-01

    One of the most used and efficient approaches to compute electrostatic properties of biological systems is to numerically solve the Poisson-Boltzmann (PB) equation. There are several software packages available that solve the PB equation for molecules in aqueous electrolyte solutions. Most of these software packages are useful for scientists with specialized training and expertise in computational biophysics. However, the user is usually required to manually take several important choices, depending on the complexity of the biological system, to successfully obtain the numerical solution of the PB equation. This may become an obstacle for researchers, experimentalists, even students with no special training in computational methodologies. Aiming to overcome this limitation, in this article we present MPBEC, a free, cross-platform, open-source software that provides non-experts in the field an easy and efficient way to perform biomolecular electrostatic calculations on single processor computers. MPBEC is a Matlab script based on the Adaptative Poisson-Boltzmann Solver, one of the most popular approaches used to solve the PB equation. MPBEC does not require any user programming, text editing or extensive statistical skills, and comes with detailed user-guide documentation. As a unique feature, MPBEC includes a useful graphical user interface (GUI) application which helps and guides users to configure and setup the optimal parameters and approximations to successfully perform the required biomolecular electrostatic calculations. The GUI also incorporates visualization tools to facilitate users pre- and post-analysis of structural and electrical properties of biomolecules.

  6. IFIS Model-Plus: A Web-Based GUI for Visualization, Comparison and Evaluation of Distributed Flood Forecasts and Hindcasts

    Science.gov (United States)

    Krajewski, W. F.; Della Libera Zanchetta, A.; Mantilla, R.; Demir, I.

    2017-12-01

    This work explores the use of hydroinformatics tools to provide an user friendly and accessible interface for executing and assessing the output of realtime flood forecasts using distributed hydrological models. The main result is the implementation of a web system that uses an Iowa Flood Information System (IFIS)-based environment for graphical displays of rainfall-runoff simulation results for both real-time and past storm events. It communicates with ASYNCH ODE solver to perform large-scale distributed hydrological modeling based on segmentation of the terrain into hillslope-link hydrologic units. The cyber-platform also allows hindcast of model performance by testing multiple model configurations and assumptions of vertical flows in the soils. The scope of the currently implemented system is the entire set of contributing watersheds for the territory of the state of Iowa. The interface provides resources for visualization of animated maps for different water-related modeled states of the environment, including flood-waves propagation with classification of flood magnitude, runoff generation, surface soil moisture and total water column in the soil. Additional tools for comparing different model configurations and performing model evaluation by comparing to observed variables at monitored sites are also available. The user friendly interface has been published to the web under the URL http://ifis.iowafloodcenter.org/ifis/sc/modelplus/.

  7. A fully customizable MATLAB Framework for MSA based on ISO 5725 Standard

    International Nuclear Information System (INIS)

    D’Aucelli, Giuseppe Maria; Giaquinto, Nicola; Mannatrizio, Sabino; Savino, Mario

    2017-01-01

    In this paper, a full featured MATLAB framework for Measurement System Analysis, fully compliant with the ISO 5725 Repeatability and Reproducibility (R and R) assessment is presented. While preserving the operations prescribed in the ISO standard, the software presents distinct improvements. First of all, all computations are made using exact closed-form formulae (instead of statistical tables) allowing a consistent analysis without limitations on the number of participating laboratories and measurements, and using custom significance levels of statistical tests. Second, a double threshold decision system for each test step has been implemented, helping the statistician to decide on the elimination of outliers/stragglers. Third, ANOVA analysis has been included. The software therefore, besides producing quickly and efficiently all the graphical and numerical results required in an inter-laboratory experiment, provide guidelines for properly updating the ISO 5725 standard. (paper)

  8. Matlab for dummies

    CERN Document Server

    Sizemore, Jim

    2014-01-01

    Plot graphs, solve equations, and write code in a flash! If you work in a STEM field, chances are you'll be using MATLAB on a daily basis. MATLAB is a popular and powerful computational tool and this book provides everything you need to start manipulating and plotting your data. MATLAB has rapidly become the premier data tool, and MATLAB For Dummies is a comprehensive guide to the fundamentals. MATLAB For Dummies guides you through this complex computational language from installation to visualization to automation.Learn MATLAB's language fundamentals including syntax, operators, and data type

  9. DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation.

    Science.gov (United States)

    Sherfey, Jason S; Soplata, Austin E; Ardid, Salva; Roberts, Erik A; Stanley, David A; Pittman-Polletta, Benjamin R; Kopell, Nancy J

    2018-01-01

    DynaSim is an open-source MATLAB/GNU Octave toolbox for rapid prototyping of neural models and batch simulation management. It is designed to speed up and simplify the process of generating, sharing, and exploring network models of neurons with one or more compartments. Models can be specified by equations directly (similar to XPP or the Brian simulator) or by lists of predefined or custom model components. The higher-level specification supports arbitrarily complex population models and networks of interconnected populations. DynaSim also includes a large set of features that simplify exploring model dynamics over parameter spaces, running simulations in parallel using both multicore processors and high-performance computer clusters, and analyzing and plotting large numbers of simulated data sets in parallel. It also includes a graphical user interface (DynaSim GUI) that supports full functionality without requiring user programming. The software has been implemented in MATLAB to enable advanced neural modeling using MATLAB, given its popularity and a growing interest in modeling neural systems. The design of DynaSim incorporates a novel schema for model specification to facilitate future interoperability with other specifications (e.g., NeuroML, SBML), simulators (e.g., NEURON, Brian, NEST), and web-based applications (e.g., Geppetto) outside MATLAB. DynaSim is freely available at http://dynasimtoolbox.org. This tool promises to reduce barriers for investigating dynamics in large neural models, facilitate collaborative modeling, and complement other tools being developed in the neuroinformatics community.

  10. Lightweight robotic mobility: template-based modeling for dynamics and controls using ADAMS/car and MATLAB

    Science.gov (United States)

    Adamczyk, Peter G.; Gorsich, David J.; Hudas, Greg R.; Overholt, James

    2003-09-01

    The U.S. Army is seeking to develop autonomous off-road mobile robots to perform tasks in the field such as supply delivery and reconnaissance in dangerous territory. A key problem to be solved with these robots is off-road mobility, to ensure that the robots can accomplish their tasks without loss or damage. We have developed a computer model of one such concept robot, the small-scale "T-1" omnidirectional vehicle (ODV), to study the effects of different control strategies on the robot's mobility in off-road settings. We built the dynamic model in ADAMS/Car and the control system in Matlab/Simulink. This paper presents the template-based method used to construct the ADAMS model of the T-1 ODV. It discusses the strengths and weaknesses of ADAMS/Car software in such an application, and describes the benefits and challenges of the approach as a whole. The paper also addresses effective linking of ADAMS/Car and Matlab for complete control system development. Finally, this paper includes a section describing the extension of the T-1 templates to other similar ODV concepts for rapid development.

  11. Fitting model-based psychometric functions to simultaneity and temporal-order judgment data: MATLAB and R routines.

    Science.gov (United States)

    Alcalá-Quintana, Rocío; García-Pérez, Miguel A

    2013-12-01

    Research on temporal-order perception uses temporal-order judgment (TOJ) tasks or synchrony judgment (SJ) tasks in their binary SJ2 or ternary SJ3 variants. In all cases, two stimuli are presented with some temporal delay, and observers judge the order of presentation. Arbitrary psychometric functions are typically fitted to obtain performance measures such as sensitivity or the point of subjective simultaneity, but the parameters of these functions are uninterpretable. We describe routines in MATLAB and R that fit model-based functions whose parameters are interpretable in terms of the processes underlying temporal-order and simultaneity judgments and responses. These functions arise from an independent-channels model assuming arrival latencies with exponential distributions and a trichotomous decision space. Different routines fit data separately for SJ2, SJ3, and TOJ tasks, jointly for any two tasks, or also jointly for the three tasks (for common cases in which two or even the three tasks were used with the same stimuli and participants). Additional routines provide bootstrap p-values and confidence intervals for estimated parameters. A further routine is included that obtains performance measures from the fitted functions. An R package for Windows and source code of the MATLAB and R routines are available as Supplementary Files.

  12. MATLAB/Simulink Pulse-Echo Ultrasound System Simulator Based on Experimentally Validated Models.

    Science.gov (United States)

    Kim, Taehoon; Shin, Sangmin; Lee, Hyongmin; Lee, Hyunsook; Kim, Heewon; Shin, Eunhee; Kim, Suhwan

    2016-02-01

    A flexible clinical ultrasound system must operate with different transducers, which have characteristic impulse responses and widely varying impedances. The impulse response determines the shape of the high-voltage pulse that is transmitted and the specifications of the front-end electronics that receive the echo; the impedance determines the specification of the matching network through which the transducer is connected. System-level optimization of these subsystems requires accurate modeling of pulse-echo (two-way) response, which in turn demands a unified simulation of the ultrasonics and electronics. In this paper, this is realized by combining MATLAB/Simulink models of the high-voltage transmitter, the transmission interface, the acoustic subsystem which includes wave propagation and reflection, the receiving interface, and the front-end receiver. To demonstrate the effectiveness of our simulator, the models are experimentally validated by comparing the simulation results with the measured data from a commercial ultrasound system. This simulator could be used to quickly provide system-level feedback for an optimized tuning of electronic design parameters.

  13. MATLAB-implemented estimation procedure for model-based assessment of hepatic insulin degradation from standard intravenous glucose tolerance test data.

    Science.gov (United States)

    Di Nardo, Francesco; Mengoni, Michele; Morettini, Micaela

    2013-05-01

    Present study provides a novel MATLAB-based parameter estimation procedure for individual assessment of hepatic insulin degradation (HID) process from standard frequently-sampled intravenous glucose tolerance test (FSIGTT) data. Direct access to the source code, offered by MATLAB, enabled us to design an optimization procedure based on the alternating use of Gauss-Newton's and Levenberg-Marquardt's algorithms, which assures the full convergence of the process and the containment of computational time. Reliability was tested by direct comparison with the application, in eighteen non-diabetic subjects, of well-known kinetic analysis software package SAAM II, and by application on different data. Agreement between MATLAB and SAAM II was warranted by intraclass correlation coefficients ≥0.73; no significant differences between corresponding mean parameter estimates and prediction of HID rate; and consistent residual analysis. Moreover, MATLAB optimization procedure resulted in a significant 51% reduction of CV% for the worst-estimated parameter by SAAM II and in maintaining all model-parameter CV% MATLAB-based procedure was suggested as a suitable tool for the individual assessment of HID process. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  14. rFRET: A comprehensive, Matlab-based program for analyzing intensity-based ratiometric microscopic FRET experiments.

    Science.gov (United States)

    Nagy, Peter; Szabó, Ágnes; Váradi, Tímea; Kovács, Tamás; Batta, Gyula; Szöllősi, János

    2016-04-01

    Fluorescence or Förster resonance energy transfer (FRET) remains one of the most widely used methods for assessing protein clustering and conformation. Although it is a method with solid physical foundations, many applications of FRET fall short of providing quantitative results due to inappropriate calibration and controls. This shortcoming is especially valid for microscopy where currently available tools have limited or no capability at all to display parameter distributions or to perform gating. Since users of multiparameter flow cytometry usually apply these tools, the absence of these features in applications developed for microscopic FRET analysis is a significant limitation. Therefore, we developed a graphical user interface-controlled Matlab application for the evaluation of ratiometric, intensity-based microscopic FRET measurements. The program can calculate all the necessary overspill and spectroscopic correction factors and the FRET efficiency and it displays the results on histograms and dot plots. Gating on plots and mask images can be used to limit the calculation to certain parts of the image. It is an important feature of the program that the calculated parameters can be determined by regression methods, maximum likelihood estimation (MLE) and from summed intensities in addition to pixel-by-pixel evaluation. The confidence interval of calculated parameters can be estimated using parameter simulations if the approximate average number of detected photons is known. The program is not only user-friendly, but it provides rich output, it gives the user freedom to choose from different calculation modes and it gives insight into the reliability and distribution of the calculated parameters. © 2016 International Society for Advancement of Cytometry. © 2016 International Society for Advancement of Cytometry.

  15. GUI test automation for Qt application

    OpenAIRE

    Wang, Lei

    2015-01-01

    GUI test automation is a popular and interesting subject in the testing industry. Many companies plan to start test automation projects in order to implement efficient, less expensive software testing. However, there are challenges for the testing team who lack experience performing GUI tests automation. Many GUI test automation projects have ended in failure due to mistakes made during the early stages of the project. The major work of this thesis is to find a solution to the challenges of e...

  16. Short Project-Based Learning with MATLAB Applications to Support the Learning of Video-Image Processing

    Science.gov (United States)

    Gil, Pablo

    2017-10-01

    University courses concerning Computer Vision and Image Processing are generally taught using a traditional methodology that is focused on the teacher rather than on the students. This approach is consequently not effective when teachers seek to attain cognitive objectives involving their students' critical thinking. This manuscript covers the development, implementation and assessment of a short project-based engineering course with MATLAB applications Multimedia Engineering being taken by Bachelor's degree students. The principal goal of all course lectures and hands-on laboratory activities was for the students to not only acquire image-specific technical skills but also a general knowledge of data analysis so as to locate phenomena in pixel regions of images and video frames. This would hopefully enable the students to develop skills regarding the implementation of the filters, operators, methods and techniques used for image processing and computer vision software libraries. Our teaching-learning process thus permits the accomplishment of knowledge assimilation, student motivation and skill development through the use of a continuous evaluation strategy to solve practical and real problems by means of short projects designed using MATLAB applications. Project-based learning is not new. This approach has been used in STEM learning in recent decades. But there are many types of projects. The aim of the current study is to analyse the efficacy of short projects as a learning tool when compared to long projects during which the students work with more independence. This work additionally presents the impact of different types of activities, and not only short projects, on students' overall results in this subject. Moreover, a statistical study has allowed the author to suggest a link between the students' success ratio and the type of content covered and activities completed on the course. The results described in this paper show that those students who took part

  17. The CMS Tracker Data Quality Monitoring Expert GUI

    CERN Document Server

    Palmonari, Francesco

    2009-01-01

    The CMS Tracker data quality monitoring (DQM) is a demanding task due the detector's high granularity. It consists of about 15148 strip and 1440 pixel detector modules. About 350,000 histograms are defined and filled accessing information from different stages of data reconstruction to check the data quality. It is impossible to manage such a large number of histograms by shift personnel and experts. A tracker specific Graphical User Interface (GUI) is developed to simplify the navigation and to spot detector problems efficiently. The GUI is web-based and implemented with Ajax technology. We will describe the framework and the specific features of the expert GUI developed for the CMS Tracker DQM system.

  18. A Matlab-based finite-difference solver for the Poisson problem with mixed Dirichlet-Neumann boundary conditions

    Science.gov (United States)

    Reimer, Ashton S.; Cheviakov, Alexei F.

    2013-03-01

    A Matlab-based finite-difference numerical solver for the Poisson equation for a rectangle and a disk in two dimensions, and a spherical domain in three dimensions, is presented. The solver is optimized for handling an arbitrary combination of Dirichlet and Neumann boundary conditions, and allows for full user control of mesh refinement. The solver routines utilize effective and parallelized sparse vector and matrix operations. Computations exhibit high speeds, numerical stability with respect to mesh size and mesh refinement, and acceptable error values even on desktop computers. Catalogue identifier: AENQ_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AENQ_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU General Public License v3.0 No. of lines in distributed program, including test data, etc.: 102793 No. of bytes in distributed program, including test data, etc.: 369378 Distribution format: tar.gz Programming language: Matlab 2010a. Computer: PC, Macintosh. Operating system: Windows, OSX, Linux. RAM: 8 GB (8, 589, 934, 592 bytes) Classification: 4.3. Nature of problem: To solve the Poisson problem in a standard domain with “patchy surface”-type (strongly heterogeneous) Neumann/Dirichlet boundary conditions. Solution method: Finite difference with mesh refinement. Restrictions: Spherical domain in 3D; rectangular domain or a disk in 2D. Unusual features: Choice between mldivide/iterative solver for the solution of large system of linear algebraic equations that arise. Full user control of Neumann/Dirichlet boundary conditions and mesh refinement. Running time: Depending on the number of points taken and the geometry of the domain, the routine may take from less than a second to several hours to execute.

  19. Guión Documental

    OpenAIRE

    Pancorbo, Juan Manuel

    2015-01-01

    La industria audiovisual en Andalucía muestra un vigor alto a pesar de la crisis económica y de la reducción de la financiación pública para los productos cinematográficos. Sin embargo, sí que existe un campo del sector audiovisual que ha tenido un incremento significativo, como es el caso de los documentales. El proceso de creación, gestión y elaboración de un guión documental tiene unos pasos específicos que lo hacen singular y que exige la necesidad de que los participantes sigan una serie...

  20. Virtual experiment of optical spatial filtering in Matlab environment

    Science.gov (United States)

    Ji, Yunjing; Wang, Chunyong; Song, Yang; Lai, Jiancheng; Wang, Qinghua; Qi, Jing; Shen, Zhonghua

    2017-08-01

    The principle of spatial filtering experiment has been introduced, and the computer simulation platform with graphical user interface (GUI) has been made out in Matlab environment. Using it various filtering processes for different input image or different filtering purpose will be completed accurately, and filtering effect can be observed clearly with adjusting experimental parameters. The physical nature of the optical spatial filtering can be showed vividly, and so experimental teaching effect will be promoted.

  1. Introduction to Artificial Vision through Laboratory Guides Using Matlab

    OpenAIRE

    Verónica Londoño-Osorio; Jhovana Marín-Pineda; Eliana I. Arango-Zuluaga

    2013-01-01

    This paper presents the design of two laboratory guides in artificial vision for a course which aims to introduce students to the different areas of specialization of his career. Therefore, the designed practices motivate and provide relevant content to the student, and to encourage research in the area of image processing. The first guide presents an introductory practice that explores the basic commands for image processing by programming a GUI in Matlab, and a second practice in which you ...

  2. PySide GUI application development

    CERN Document Server

    Loganathan, Venkateshwaran

    2013-01-01

    An accessible and practical guide to developing GUI's for Python applications.This book is written for Python programmers who want to learn about GUI programming. It is also suitable for those who are new to Python but are familiar with object-oriented programming.

  3. Upgrade of GUI for linac control

    International Nuclear Information System (INIS)

    Oonuma, Tadahiro; Shibasaki, Yoshinobu

    1993-01-01

    We are now upgrading GUI(Graphical User Interface) of the control system at Tohoku Linac. This system uses Personal Computer (DECpc466D2LP-66MHz) and Visual Basic which makes coding GUI easy and simple. The first results of this system are presented. (author)

  4. Introduction to TAFI - A Matlab® toolbox for analysis of flexural isostasy

    Science.gov (United States)

    Jha, S.; Harry, D. L.; Schutt, D.

    2016-12-01

    The isostatic response of vertical tectonic loads emplaced on thin elastic plates overlying inviscid substrate and the corresponding gravity anomalies are commonly modeled using well established theories and methodologies of flexural analysis. However, such analysis requires some mathematical and coding expertise on part of users. With that in mind, we designed a new interactive Matlab® toolbox called Toolbox for Analysis of Flexural Isostasy (TAFI). TAFI allows users to create forward models (2-D and 3-D) of flexural deformation of the lithosphere and resulting gravity anomaly. TAFI computes Green's Functions for flexure of the elastic plate subjected to point or line loads, and analytical solution for harmonic loads. Flexure due to non-impulsive, distributed 2-D or 3-D loads are computed by convolving the appropriate Green's function with a user-supplied spatially discretized load function. The gravity anomaly associated with each density interface is calculated by using the Fourier Transform of flexural deflection of these interfaces and estimating the gravity in the wavenumber domain. All models created in TAFI are based on Matlab's intrinsic functions and do not require any specialized toolbox, function or library except those distributed with TAFI. Modeling functions within TAFI can be called from Matlab workspace, from within user written programs or from the TAFI's graphical user interface (GUI). The GUI enables the user to model the flexural deflection of lithosphere interactively, enabling real time comparison of model fit with observed data constraining the flexural deformation and gravity, facilitating rapid search for best fitting flexural model. TAFI is a very useful teaching and research tool and have been tested rigorously in graduate level teaching and basic research environment.

  5. Matlab for engineers explained

    CERN Document Server

    Gustafsson, Fredrik

    2003-01-01

    This book is written for students at bachelor and master programs and has four different purposes, which split the book into four parts: 1. To teach first or early year undergraduate engineering students basic knowledge in technical computations and programming using MATLAB. The first part starts from first principles and is therefore well suited both for readers with prior exposure to MATLAB but lacking a solid foundational knowledge of the capabilities of the system and readers not having any previous experience with MATLAB. The foundational knowledge gained from these interactive guided tours of the system will hopefully be sufficient for an effective utilization of MATLAB in the engineering profession, in education and in research. 2. To explain the foundations of more advanced use of MATLAB using the facilities added the last couple of years, such as extended data structures, object orientation and advanced graphics. 3. To give an introduction to the use of MATLAB in typical undergraduate courses in elec...

  6. Matlab linear algebra

    CERN Document Server

    Lopez, Cesar

    2014-01-01

    MATLAB is a high-level language and environment for numerical computation, visualization, and programming. Using MATLAB, you can analyze data, develop algorithms, and create models and applications. The language, tools, and built-in math functions enable you to explore multiple approaches and reach a solution faster than with spreadsheets or traditional programming languages, such as C/C++ or Java. MATLAB Linear Algebra introduces you to the MATLAB language with practical hands-on instructions and results, allowing you to quickly achieve your goals. In addition to giving an introduction to

  7. MATLAB-based program for optimization of quantum cascade laser active region parameters and calculation of output characteristics in magnetic field

    Science.gov (United States)

    Smiljanić, J.; Žeželj, M.; Milanović, V.; Radovanović, J.; Stanković, I.

    2014-03-01

    supporting MATLAB version R2010a or higher. RAM: Minimum required is 1 GB. Memory usage increases for less intense magnetic fields. Classification: 15. Nature of problem: The nature of the problem is to provide an efficient numerical algorithm implementation for optimization of GaAs/AlGaAs QCL active region parameters and calculation of output properties in the magnetic field. Solution method: The optimization of the QCL laser performance at selected wavelength is performed at entire free-parameters space using simulated annealing algorithm. The scattering rates are calculated in the presence and without magnetic field and used as coefficients in rate equations. The standard MATLAB procedures were used to solve iteratively this system of equations and obtain distribution of electron densities over electronic states. Restrictions: The machine must provide the necessary main memory which decreases roughly quadratically with the increase of the magnetic field intensity. Running time: Optimization time on Intel 3 GHz processor is about 2×104 s. The calculation time of laser output properties for values set automatically in GUI is 5×104 s.

  8. A novel GUI modeled fuzzy logic controller for a solar powered energy utilization scheme

    International Nuclear Information System (INIS)

    Altas, I. H.; Sharaf, A. M.

    2007-01-01

    Photovoltaic PVA-solar powered electrical systems comprise different components and subsystems to be controlled separately. Since the generated solar power is dependant on uncontrollable environmental conditions, it requires extra caution to design controllers that handle unpredictable events and maintain efficient load matching power. In this study, a photovoltaic (PV) solar array model is developed for Matlab/Simulink GUI environment and controlled using a fuzzy logic controller (FLC), which is also developed for GUI environment. The FLC is also used to control the DC load bus voltage at constant value as well as controlling the speed of a PMDC motor as one of the loads being fed. The FLC controller designed using the Matlab/Simuling GUI environment has flexible design criteria's so that it can easily be modified and extended for controlling different systems. The proposed FLC is used in three different parts of the PVA stand alone utilization scheme here. One of these parts is the speed control of the PMDC load, one of the other parts is controlling the DC load bus voltage, and the third part is the maximum power point (MPPT) tracking control, which is used to operate the PVA at its available maximum power as the solar insolation and ambient temperature change. This paper presents a study of a standalone Photovoltaic energy utilization system feeding a DC and AC hybrid electric load and is fully controlled by a novel and simple on-line fuzzy logic based dynamic search, detection and tracking controller that ensures maximum power point operation under excursions in Solar Insolation, Ambient temperature and electric load variations. The maximum power point MPP-Search and Detection algorithm is fully dynamic in nature and operates without any required direct measurement or forecasted PV array information about the irradiation and temperature. An added Search sensitivity measure is defined and also used in the MPP search algorithm to sense and dynamic response for

  9. Matlab laser toolbox

    NARCIS (Netherlands)

    Römer, Gerardus Richardus, Bernardus, Engelina; Huis in 't Veld, Bert; Schmidt, M.; Vollertsen, F.; Geiger, M.

    2010-01-01

    Matlab® is a program for numeric computation, simulation and visualization, developed by The Mathworks, Inc. It is used heavily in education, research, and industry, for solving general, as well as application area-specific problems, that arise in various disciplines. For this purpose Matlab has

  10. The Matlab Syntax

    DEFF Research Database (Denmark)

    Jørgensen, Jakob Heide; Skajaa, Anders

    Matlab (MATrix LABoratory) is one of the most widely used programming environments for numerical computations and simulations in the technical sciences. The reason is that Matlab makes it easy to get started as well as to construct advanced programs. This book is a practical guide to understanding...... and using Matlab. It works as a quick reference for anyone who is starting to use Matlab for example while enrolled in university studies. For this reason, the book is limited to covering what is typically used by a university student and is designed as a reference of the syntax including plenty of examples....... While the primary audience of the book is university students, it is well suited for anyone who wants to become acquainted with Matlab....

  11. Motor-Reducer Sizing through a MATLAB-Based Graphical Technique

    Science.gov (United States)

    Giberti, H.; Cinquemani, S.

    2012-01-01

    The design of the drive system for an automatic machine and its correct sizing is a very important competence for an electrical or mechatronic engineer. This requires knowledge that crosses the fields of electrical engineering, electronics and mechanics, as well as the skill to choose commercial components based upon their technical documentation.…

  12. MATLAB-SIMULINK BASED INFORMATION SUPPORT FOR DIGITAL OVERCURRENT PROTECTION TEST SETS

    Directory of Open Access Journals (Sweden)

    I. V. Novash

    2017-01-01

    Full Text Available The implementation of information support for PC-based and hardware-software based sets for digital overcurrent protection devices and their models testing using MatLab-Simulink environment is considered. It is demonstrated that the mathematical modeling of a part of the power system – viz. of the generalized electric power object – could be based on rigid and flexible models. Rigid models implemented on the basis of mathematical description of electrical and magnetic circuits of a power system can be considered as a reference model for the simulation results that have been obtained with the aid of another simulation system to be compared with. It is proposed to implement flexible models for generalized electric power object in the MatLabSimulink environment that includes the SimPowerSystems component library targeted to power system modeling. The features of the parameters calculation of the SimPowerSystems component library blocks that the power system model is formed of are considered. Out of the Simulink standard blocks the models of a wye-connected current transformers were composed as well as the digital overcurrent protection, missing in the component library. A comparison of simulation results of one and the same generalized electric power object implemented in various PC-based software packages was undertaken. The divergence of simulation results did not exceed 3 %; the latter allows us to recommend the MatLab-Simulink environment for information support creation for hardware-software based sets for digital overcurrent protection devices testing. The structure of the hardware-software based set for digital overcurrent protection device testing using the Omicron CMC 356 has been suggested. Time to trip comparison between the real digital protection device МР 801 and the model with the parameters which are exactly match the parameters of the prototype device was carried out using the identical test inputs. The results of the tests

  13. Method to Calculate the Electricity Generated by a Photovoltaic Cell, Based on Its Mathematical Model Simulations in MATLAB

    Directory of Open Access Journals (Sweden)

    Carlos Morcillo-Herrera

    2015-01-01

    Full Text Available This paper presents a practical method for calculating the electrical energy generated by a PV panel (kWhr through MATLAB simulations based on the mathematical model of the cell, which obtains the “Mean Maximum Power Point” (MMPP in the characteristic V-P curve, in response to evaluating historical climate data at specific location. This five-step method calculates through MMPP per day, per month, or per year, the power yield by unit area, then electrical energy generated by PV panel, and its real conversion efficiency. To validate the method, it was applied to Sewage Treatment Plant for a Group of Drinking Water and Sewerage of Yucatan (JAPAY, México, testing 250 Wp photovoltaic panels of five different manufacturers. As a result, the performance, the real conversion efficiency, and the electricity generated by five different PV panels in evaluation were obtained and show the best technical-economic option to develop the PV generation project.

  14. Accelerator Modeling with MATLAB Accelerator Toolbox

    International Nuclear Information System (INIS)

    2002-01-01

    This paper introduces Accelerator Toolbox (AT)--a collection of tools to model storage rings and beam transport lines in the MATLAB environment. The objective is to illustrate the flexibility and efficiency of the AT-MATLAB framework. The paper discusses three examples of problems that are analyzed frequently in connection with ring-based synchrotron light sources

  15. Extraction of CT dose information from DICOM metadata: automated Matlab-based approach.

    Science.gov (United States)

    Dave, Jaydev K; Gingold, Eric L

    2013-01-01

    The purpose of this study was to extract exposure parameters and dose-relevant indexes of CT examinations from information embedded in DICOM metadata. DICOM dose report files were identified and retrieved from a PACS. An automated software program was used to extract from these files information from the structured elements in the DICOM metadata relevant to exposure. Extracting information from DICOM metadata eliminated potential errors inherent in techniques based on optical character recognition, yielding 100% accuracy.

  16. Calculation and Simulation Study on Transient Stability of Power System Based on Matlab/Simulink

    Directory of Open Access Journals (Sweden)

    Shi Xiu Feng

    2016-01-01

    Full Text Available The stability of the power system is destroyed, will cause a large number of users power outage, even cause the collapse of the whole system, extremely serious consequences. Based on the analysis in single machine infinite system as an example, when at the f point two phase ground fault occurs, the fault lines on either side of the circuit breaker tripping resection at the same time,respectively by two kinds of calculation and simulation methods of system transient stability analysis, the conclusion are consistent. and the simulation analysis is superior to calculation analysis.

  17. Control of noise and structural vibration a MATLAB-based approach

    CERN Document Server

    Mao, Qibo

    2013-01-01

    Control of Noise and Structural Vibration presents a MATLAB®-based approach to solving the problems of undesirable noise generation and transmission by structures and of undesirable vibration within structures in response to environmental or operational forces. The fundamentals of acoustics, vibration and coupling between vibrating structures and the sound fields they generate are introduced including a discussion of the finite element method for vibration analysis. Following this, the treatment of sound and vibration control begins, illustrated by example systems such as beams, plates and double plate structures. Sensor and actuator placement is explained as is the idea of modal sensor–actuators. The design of appropriate feedback systems includes consideration of basic stability criteria and robust active structural acoustic control. Single and multi-mode positive position feedback (PPF) control systems are also described in the context of loudspeaker–duct model with non-collocated loudspeaker–microp...

  18. A Matlab based framework for the real-time environment at FTU

    International Nuclear Information System (INIS)

    Vitale, V.; Iannone, F.; Centioli, C.; Pangione, L.; Zaccarian, L.

    2006-01-01

    The Feedback Control System running at FTU has been recently ported from a commercial platform (O.S. LynxOS) to an open-source GNU/Linux-RTAI platform, obtaining significant performance and cost improvements. Thanks to the new platform, more user friendly tools can be developed in order to help the designer with new control laws. A relevant goal within this new framework is to provide a high level environment where new control algorithms can be created then simulated and finally released without minding the code implementation issues. The ideal situation would be to have a dedicated framework which provides all the necessary phases from the design to the commissioning of the new software. This framework should simulate the real-time context and make transparent to the user on the one hand all the issues related to the simulation (e.g. experimental data retrieving) and on the other hand all the aspects (platform, operating system, programming language, network, hardware...) related to the actual environment where the new algorithm will be run. In this paper we report on recent developments, based on The MathWorks' Simulink and Real Time Workshop (RTW) packages, aimed at obtaining the above mentioned environment where a new control law can be easily modelled, simulated with the real time constraints and then translated in the appropriate executable format. Using this tool, the control designer only needs to specify the control law in the Simulink graphical environment. The arising model is then automatically translated in C code, integrated with control system code and simulated in real-time using the data from the FTU data base archive. All the necessary steps to adapt the RTW scripts and the control system code to the new simulation/validation environment will be illustrated in this paper. Moreover we will report on some experimental tests where the actual experiment is compared with the simulations provided by the proposed environment. (author)

  19. Wavelet decomposition based principal component analysis for face recognition using MATLAB

    Science.gov (United States)

    Sharma, Mahesh Kumar; Sharma, Shashikant; Leeprechanon, Nopbhorn; Ranjan, Aashish

    2016-03-01

    For the realization of face recognition systems in the static as well as in the real time frame, algorithms such as principal component analysis, independent component analysis, linear discriminate analysis, neural networks and genetic algorithms are used for decades. This paper discusses an approach which is a wavelet decomposition based principal component analysis for face recognition. Principal component analysis is chosen over other algorithms due to its relative simplicity, efficiency, and robustness features. The term face recognition stands for identifying a person from his facial gestures and having resemblance with factor analysis in some sense, i.e. extraction of the principal component of an image. Principal component analysis is subjected to some drawbacks, mainly the poor discriminatory power and the large computational load in finding eigenvectors, in particular. These drawbacks can be greatly reduced by combining both wavelet transform decomposition for feature extraction and principal component analysis for pattern representation and classification together, by analyzing the facial gestures into space and time domain, where, frequency and time are used interchangeably. From the experimental results, it is envisaged that this face recognition method has made a significant percentage improvement in recognition rate as well as having a better computational efficiency.

  20. Robust observer-based fault diagnosis for nonlinear systems using Matlab

    CERN Document Server

    Zhang, Jian; Nguang, Sing Kiong

    2016-01-01

    This book introduces several observer-based methods, including: • the sliding-mode observer • the adaptive observer • the unknown-input observer and • the descriptor observer method for the problem of fault detection, isolation and estimation, allowing readers to compare and contrast the different approaches. The authors present basic material on Lyapunov stability theory, H¥ control theory, sliding-mode control theory and linear matrix inequality problems in a self-contained and step-by-step manner. Detailed and rigorous mathematical proofs are provided for all the results developed in the text so that readers can quickly gain a good understanding of the material. MATLAB® and Simulink® codes for all the examples, which can be downloaded from http://extras.springer.com, enable students to follow the methods and illustrative examples easily. The systems used in the examples make the book highly relevant to real-world problems in industrial control engineering and include a seventh-order aircraft mod...

  1. R and Matlab

    CERN Document Server

    Hiebeler, David E

    2015-01-01

    The First Book to Explain How a User of R or MATLAB Can Benefit from the OtherIn today's increasingly interdisciplinary world, R and MATLAB® users from different backgrounds must often work together and share code. R and MATLAB® is designed for users who already know R or MATLAB and now need to learn the other platform. The book makes the transition from one platform to the other as quick and painless as possible.Enables R and MATLAB Users to Easily Collaborate and Share CodeThe author covers essential tasks, such as working with matrices and vectors, writing functions and other programming co

  2. Essential Matlab and Octave

    CERN Document Server

    Rogel-Salazar, Jesus

    2014-01-01

    ""This is an excellent book for anyone approaching MATLAB or Octave for the first time. The pleasant language used throughout creates the sensation of having the author by your side. … An interesting feature are the examples used to explain the use of functions and operations. … compared to similar texts on Octave and MATLAB, the author introduces at an early stage how to produce line and surface plots with MATLAB and Octave. It is very attractive to students to be able to quickly produce plots with scientific journal quality. … The margin notes are great as they can also work as virtual bookm

  3. Numerical methods using Matlab

    CERN Document Server

    Lindfield, George

    2012-01-01

    Numerical Methods using MATLAB, 3e, is an extensive reference offering hundreds of useful and important numerical algorithms that can be implemented into MATLAB for a graphical interpretation to help researchers analyze a particular outcome. Many worked examples are given together with exercises and solutions to illustrate how numerical methods can be used to study problems that have applications in the biosciences, chaos, optimization, engineering and science across the board. Numerical Methods using MATLAB, 3e, is an extensive reference offering hundreds of use

  4. Efficient Matlab Programs

    Data.gov (United States)

    National Aeronautics and Space Administration — Matlab has a reputation for running slowly. Here are some pointers on how to speed computations, to an often unexpected degree. Subjects currently covered: Matrix...

  5. Mathematical Modeling Using MATLAB

    National Research Council Canada - National Science Library

    Phillips, Donovan

    1998-01-01

    .... Mathematical Modeling Using MA MATLAB acts as a companion resource to A First Course in Mathematical Modeling with the goal of guiding the reader to a fuller understanding of the modeling process...

  6. An introduction to MATLAB.

    Science.gov (United States)

    Sobie, Eric A

    2011-09-13

    This two-part lecture introduces students to the scientific computing language MATLAB. Prior computer programming experience is not required. The lectures present basic concepts of computer programming logic that tend to cause difficulties for beginners in addition to concepts that relate specifically to the MATLAB language syntax. The lectures begin with a discussion of vectors, matrices, and arrays. Because many types of biological data, such as fluorescence images and DNA microarrays, are stored as two-dimensional objects, processing these data is a form of array manipulation, and MATLAB is especially adept at handling such array objects. The students are introduced to basic commands in MATLAB, as well as built-in functions that provide useful shortcuts. The second lecture focuses on the differences between MATLAB scripts and MATLAB functions and describes when one method of programming organization might be preferable to the other. The principles are illustrated through the analysis of experimental data, specifically measurements of intracellular calcium concentration in live cells obtained using confocal microscopy.

  7. Application of MATLAB in testing digital power supply controllers

    International Nuclear Information System (INIS)

    Ke Xinhua; Chinese Academy of Sciences, Beijing; Lu Songlin; Shen Tianjian

    2008-01-01

    Based on introducing MATLAB SISOTOOL in MATLAB control box and the magnet power supply system in detail, this paper presented the application of MATLAB SISOTOOL in Testing Digital Power Supply controllers. This control tool should be popularized because of its characteristics of convenience and easy-to-use. (authors)

  8. mcaGUI: microbial community analysis R-Graphical User Interface (GUI).

    Science.gov (United States)

    Copeland, Wade K; Krishnan, Vandhana; Beck, Daniel; Settles, Matt; Foster, James A; Cho, Kyu-Chul; Day, Mitch; Hickey, Roxana; Schütte, Ursel M E; Zhou, Xia; Williams, Christopher J; Forney, Larry J; Abdo, Zaid

    2012-08-15

    Microbial communities have an important role in natural ecosystems and have an impact on animal and human health. Intuitive graphic and analytical tools that can facilitate the study of these communities are in short supply. This article introduces Microbial Community Analysis GUI, a graphical user interface (GUI) for the R-programming language (R Development Core Team, 2010). With this application, researchers can input aligned and clustered sequence data to create custom abundance tables and perform analyses specific to their needs. This GUI provides a flexible modular platform, expandable to include other statistical tools for microbial community analysis in the future. The mcaGUI package and source are freely available as part of Bionconductor at http://www.bioconductor.org/packages/release/bioc/html/mcaGUI.html

  9. Computational colour science using MATLAB

    CERN Document Server

    Westland, Stephen; Cheung, Vien

    2012-01-01

    Computational Colour Science Using MATLAB 2nd Edition offers a practical, problem-based approach to colour physics. The book focuses on the key issues encountered in modern colour engineering, including efficient representation of colour information, Fourier analysis of reflectance spectra and advanced colorimetric computation. Emphasis is placed on the practical applications rather than the techniques themselves, with material structured around key topics. These topics include colour calibration of visual displays, computer recipe prediction and models for colour-appearance prediction. Each t

  10. Indications and determinants of caesarean section delivery: Evidence from a population-based study in Matlab, Bangladesh.

    Directory of Open Access Journals (Sweden)

    Tahmina Begum

    Full Text Available Caesarean section (C-section is a major obstetric intervention for saving lives of women and their newborns from pregnancy and childbirth related complications. Un-necessary C-sections may have adverse impact upon maternal and neonatal outcomes. In Bangladesh there is paucity of data on clinical indication of C-section at population level. We conducted a retrospective study in icddr,b Health and Demographic Surveillance System (HDSS area of Matlab to look into the indications and determinants of C-sections. All resident women in HDSS service area who gave birth in 2013 with a known birth outcome, were included in the study. Women who underwent C-section were identified from birth and pregnancy files of HDSS and their indication for C-section were collected reviewing health facility records where the procedure took place, supplemented by face-to-face interview of mothers where data were missing. Indications of C-section were presented as frequency distribution and further divided into different groups following 3 distinct classification systems. Socio-demographic predictors were explored following statistical method of binary logistic regression.During 2013, facility delivery rate was 84% and population based C-section rate was 35% of all deliveries in icddr,b service area. Of all C-sections, only 1.4% was conducted for Absolute Maternal Indications (AMIs. Major indications of C-sections included: repeat C-section (24%, foetal distress (21%, prolonged labour (16%, oligohydramnios (14% and post-maturity (13%. More than 80% C-sections were performed in for-profit private facilities. Probability of C-section delivery increased with improved socio-economic status, higher education, lower birth order, higher age, and with more number of Antenatal Care use and presence of bad obstetric history. Eight maternal deaths occurred, of which five were delivered by C-section.C-section rate in this area was much higher than national average as well as global

  11. Indications and determinants of caesarean section delivery: Evidence from a population-based study in Matlab, Bangladesh.

    Science.gov (United States)

    Begum, Tahmina; Rahman, Aminur; Nababan, Herfina; Hoque, Dewan Md Emdadul; Khan, Al Fazal; Ali, Taslim; Anwar, Iqbal

    2017-01-01

    Caesarean section (C-section) is a major obstetric intervention for saving lives of women and their newborns from pregnancy and childbirth related complications. Un-necessary C-sections may have adverse impact upon maternal and neonatal outcomes. In Bangladesh there is paucity of data on clinical indication of C-section at population level. We conducted a retrospective study in icddr,b Health and Demographic Surveillance System (HDSS) area of Matlab to look into the indications and determinants of C-sections. All resident women in HDSS service area who gave birth in 2013 with a known birth outcome, were included in the study. Women who underwent C-section were identified from birth and pregnancy files of HDSS and their indication for C-section were collected reviewing health facility records where the procedure took place, supplemented by face-to-face interview of mothers where data were missing. Indications of C-section were presented as frequency distribution and further divided into different groups following 3 distinct classification systems. Socio-demographic predictors were explored following statistical method of binary logistic regression. During 2013, facility delivery rate was 84% and population based C-section rate was 35% of all deliveries in icddr,b service area. Of all C-sections, only 1.4% was conducted for Absolute Maternal Indications (AMIs). Major indications of C-sections included: repeat C-section (24%), foetal distress (21%), prolonged labour (16%), oligohydramnios (14%) and post-maturity (13%). More than 80% C-sections were performed in for-profit private facilities. Probability of C-section delivery increased with improved socio-economic status, higher education, lower birth order, higher age, and with more number of Antenatal Care use and presence of bad obstetric history. Eight maternal deaths occurred, of which five were delivered by C-section. C-section rate in this area was much higher than national average as well as global

  12. Accelerator Toolbox for MATLAB

    International Nuclear Information System (INIS)

    Terebilo, Andrei

    2001-01-01

    This paper introduces Accelerator Toolbox (AT)--a collection of tools to model particle accelerators and beam transport lines in the MATLAB environment. At SSRL, it has become the modeling code of choice for the ongoing design and future operation of the SPEAR 3 synchrotron light source. AT was designed to take advantage of power and simplicity of MATLAB--commercially developed environment for technical computing and visualization. Many examples in this paper illustrate the advantages of the AT approach and contrast it with existing accelerator code frameworks

  13. Introduction à MATLAB

    OpenAIRE

    Zenou, Emmanuel

    2013-01-01

    Cette initiation à MatLab a pour objectif de se familiariser à un outil très utilisé par la communauté scientifique dans les laboratoires et dans l'industrie. Il a également pour objectif d'initier (pour ceux qui n'y ont jamais touché) à la programmation et à l'algorithmique, ce qui est indispensable à tout bon ingénieur aujourd'hui. En effet, beaucoup de notions introduites ici ne sont pas propres à MatLab mais à tout langage structuré comme le C/C++, le Java, etc.

  14. MATLAB 3A

    DEFF Research Database (Denmark)

    Freil, Ole; Kristiansen, Heidi; Kaas, Thomas

    MATLAB 3a – Matematiklaboratoriet er en elevbog til første halvdel af 3. klasse. Bogen indeholder fire kapitler: 'Store tal og regnemåder', 'Kan du tegne det?', 'Gange og division', 'Undersøg data og chance'.......MATLAB 3a – Matematiklaboratoriet er en elevbog til første halvdel af 3. klasse. Bogen indeholder fire kapitler: 'Store tal og regnemåder', 'Kan du tegne det?', 'Gange og division', 'Undersøg data og chance'....

  15. A GUI Prototype for the Framework of Criminal Judicial Reasoning System

    OpenAIRE

    Thammaboosadee, Sotarat; Silparcha, Udom

    2009-01-01

    This paper proposed a developed graphical user interface (GUI) prototype, whichis supported by the framework of data mining techniques-based criminal judicial reasoning system.The GUI sequences of the prototype are satisfied with criminal judicial procedure in civil lawsystem. Initially, user must build the model by input the existing incident and specifying the detail ofobjects, elements of crime, charge and judgment. After enough training, the prototype will be readyto determine judgments f...

  16. Web Program for Development of GUIs for Cluster Computers

    Science.gov (United States)

    Czikmantory, Akos; Cwik, Thomas; Klimeck, Gerhard; Hua, Hook; Oyafuso, Fabiano; Vinyard, Edward

    2003-01-01

    WIGLAF (a Web Interface Generator and Legacy Application Facade) is a computer program that provides a Web-based, distributed, graphical-user-interface (GUI) framework that can be adapted to any of a broad range of application programs, written in any programming language, that are executed remotely on any cluster computer system. WIGLAF enables the rapid development of a GUI for controlling and monitoring a specific application program running on the cluster and for transferring data to and from the application program. The only prerequisite for the execution of WIGLAF is a Web-browser program on a user's personal computer connected with the cluster via the Internet. WIGLAF has a client/server architecture: The server component is executed on the cluster system, where it controls the application program and serves data to the client component. The client component is an applet that runs in the Web browser. WIGLAF utilizes the Extensible Markup Language to hold all data associated with the application software, Java to enable platform-independent execution on the cluster system and the display of a GUI generator through the browser, and the Java Remote Method Invocation software package to provide simple, effective client/server networking.

  17. Matlab/Simulink-based simulation for digital-control system of marine three-shaft gas-turbine

    International Nuclear Information System (INIS)

    Yu Youhong; Chen Lingen; Sun Fengrui; Wu Chih

    2005-01-01

    A gas-turbine plant model is required in order to design and develop its control system. In this paper, a simulation model of a marine three-shaft gas-turbine's digital-control system is presented. Acceleration processes are simulated via a Matlab/Simulink program. The effects of some of the main variables on the system's performance are analyzed and the optimum values of parameters obtained. A simulation experiment upon a real gas-turbine plant is performed using the digital-control model. The results show that the simulation model is reliable

  18. Visual media processing using Matlab beginner's guide

    CERN Document Server

    Siogkas, George

    2013-01-01

    Written in a friendly, Beginner's Guide format, showing the user how to use the digital media aspects of Matlab (image, video, sound) in a practical, tutorial-based style.This is great for novice programmers in any language who would like to use Matlab as a tool for their image and video processing needs, and also comes in handy for photographers or video editors with even less programming experience wanting to find an all-in-one tool for their tasks.

  19. Basis and application of MATLAB

    International Nuclear Information System (INIS)

    Shin, Chun Sik; An, Yeong Ju; Byun, Gi Sik; Lee, Hyeong Gi

    1998-01-01

    This book introduces MATLAB, which deals with operation and basic function, MATLAB programming like for, if, else, while and script file, equation, calculation and interpolation, operation of the matrix, file management function, such as basic file management function input-output of internal file of MATLAB input-output of outer file of MATLAB, basic graph function, two-dimensional graph and three-dimensional graph and other graph function debugger of MATLAB program in 4.2 version and debugger of MATLAB in 5.1 version.

  20. GUI and Object Oriented Programming in COBOL.

    Science.gov (United States)

    Lorents, Alden C.

    Various schools are struggling with the introduction of Object Oriented (OO) programming concepts and GUI (graphical user interfaces) within the traditional COBOL sequence. OO programming has been introduced in some of the curricula with languages such as C++, Smalltalk, and Java. Introducing OO programming into a typical COBOL sequence presents…

  1. Learning Matlab a problem solving approach

    CERN Document Server

    Gander, Walter

    2015-01-01

    This comprehensive and stimulating introduction to Matlab, a computer language now widely used for technical computing, is based on an introductory course held at Qian Weichang College, Shanghai University, in the fall of 2014.  Teaching and learning a substantial programming language aren’t always straightforward tasks. Accordingly, this textbook is not meant to cover the whole range of this high-performance technical programming environment, but to motivate first- and second-year undergraduate students in mathematics and computer science to learn Matlab by studying representative problems, developing algorithms and programming them in Matlab. While several topics are taken from the field of scientific computing, the main emphasis is on programming. A wealth of examples are completely discussed and solved, allowing students to learn Matlab by doing: by solving problems, comparing approaches and assessing the proposed solutions.

  2. MOCCASIN: converting MATLAB ODE models to SBML.

    Science.gov (United States)

    Gómez, Harold F; Hucka, Michael; Keating, Sarah M; Nudelman, German; Iber, Dagmar; Sealfon, Stuart C

    2016-06-15

    MATLAB is popular in biological research for creating and simulating models that use ordinary differential equations (ODEs). However, sharing or using these models outside of MATLAB is often problematic. A community standard such as Systems Biology Markup Language (SBML) can serve as a neutral exchange format, but translating models from MATLAB to SBML can be challenging-especially for legacy models not written with translation in mind. We developed MOCCASIN (Model ODE Converter for Creating Automated SBML INteroperability) to help. MOCCASIN can convert ODE-based MATLAB models of biochemical reaction networks into the SBML format. MOCCASIN is available under the terms of the LGPL 2.1 license (http://www.gnu.org/licenses/lgpl-2.1.html). Source code, binaries and test cases can be freely obtained from https://github.com/sbmlteam/moccasin : mhucka@caltech.edu More information is available at https://github.com/sbmlteam/moccasin. © The Author 2016. Published by Oxford University Press.

  3. SBEToolbox: A Matlab Toolbox for Biological Network Analysis.

    Science.gov (United States)

    Konganti, Kranti; Wang, Gang; Yang, Ence; Cai, James J

    2013-01-01

    We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven graphical user interface (GUI) of SBEToolbox, enables easy access to various network and graph algorithms for programmers and non-programmers alike. All source code and sample data are freely available at https://github.com/biocoder/SBEToolbox/releases.

  4. Go4: multithreaded inter-task communication with ROOT - writing non-blocking GUIs

    International Nuclear Information System (INIS)

    Adamczewski, J.; Al-Turany, M.; Bertini, D.; Essel, H.G.

    2001-01-01

    The future GSI Online-Offline-Object-Oriented analysis framework Go4 based on ROOT [CERN, R.Brun et al] provides a mechanism to monitor and control an analysis at any time. This is achieved by running the GUI and the analysis in different tasks. To control these tasks by one non-blocking GUI, the Go4 TaskHandler package was developed. It offers an asynchronous inter task communication via independent channels for commands, data, and status information. Each channel is processed by a dedicated thread and has a buffer queue as interface to the working thread. The threads are controlled by the Go4ThreadManager package, based on the ROOT TThread package. In parallel to the GUI actions, the analysis tasks can display objects like histograms in the GUI. A test GUI was implemented using the Qt widget library (Trolltech Inc.). A Qt to ROOT interface has been developed. The Go4 packages may be utilized for any ROOT application that requires to control independent data processing or monitoring tasks from a non-blocking GUI

  5. mcaGUI: microbial community analysis R-Graphical User Interface (GUI)

    OpenAIRE

    Copeland, Wade K.; Krishnan, Vandhana; Beck, Daniel; Settles, Matt; Foster, James A.; Cho, Kyu-Chul; Day, Mitch; Hickey, Roxana; Schütte, Ursel M.E.; Zhou, Xia; Williams, Christopher J.; Forney, Larry J.; Abdo, Zaid

    2012-01-01

    Summary: Microbial communities have an important role in natural ecosystems and have an impact on animal and human health. Intuitive graphic and analytical tools that can facilitate the study of these communities are in short supply. This article introduces Microbial Community Analysis GUI, a graphical user interface (GUI) for the R-programming language (R Development Core Team, 2010). With this application, researchers can input aligned and clustered sequence data to create custom abundance ...

  6. DACE - A Matlab Kriging Toolbox

    DEFF Research Database (Denmark)

    2002-01-01

    DACE, Design and Analysis of Computer Experiments, is a Matlab toolbox for working with kriging approximations to computer models.......DACE, Design and Analysis of Computer Experiments, is a Matlab toolbox for working with kriging approximations to computer models....

  7. Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB(®) graphical user interface.

    Science.gov (United States)

    Sridhar, Vishnu B; Tian, Peifang; Dale, Anders M; Devor, Anna; Saisan, Payam A

    2014-01-01

    We present a database client software-Neurovascular Network Explorer 1.0 (NNE 1.0)-that uses MATLAB(®) based Graphical User Interface (GUI) for interaction with a database of 2-photon single-vessel diameter measurements from our previous publication (Tian et al., 2010). These data are of particular interest for modeling the hemodynamic response. NNE 1.0 is downloaded by the user and then runs either as a MATLAB script or as a standalone program on a Windows platform. The GUI allows browsing the database according to parameters specified by the user, simple manipulation and visualization of the retrieved records (such as averaging and peak-normalization), and export of the results. Further, we provide NNE 1.0 source code. With this source code, the user can database their own experimental results, given the appropriate data structure and naming conventions, and thus share their data in a user-friendly format with other investigators. NNE 1.0 provides an example of seamless and low-cost solution for sharing of experimental data by a regular size neuroscience laboratory and may serve as a general template, facilitating dissemination of biological results and accelerating data-driven modeling approaches.

  8. Optimasi Value at Risk Pada Reksa Dana Dengan Metode Historical Simulation Dan Aplikasinya Menggunakan Gui Matlab

    OpenAIRE

    Monica, Christa; Tarno, Tarno; Yasin, Hasbi

    2016-01-01

    Value at Risk (VaR) is a method used to measure financial risk within a firm or investment portfolio over a specific time period at certain confidence interval level. Historical Simulation is used in this research to compute VaR of stock mutual fund at 5% confidence interval level, with one day time period and Rp 100.000.000,00 startup investment fund. Historical Simulation ia a non parametric method where the formula doesn't require any asumption. Portfolio optimization is done by calculatin...

  9. Using health and demographic surveillance for the early detection of cholera outbreaks: analysis of community- and hospital-based data from Matlab, Bangladesh.

    Science.gov (United States)

    Saulnier, Dell D; Persson, Lars-Åke; Streatfield, Peter Kim; Faruque, A S G; Rahman, Anisur

    2016-01-01

    Cholera outbreaks are a continuing problem in Bangladesh, and the timely detection of an outbreak is important for reducing morbidity and mortality. In Matlab, the ongoing Health and Demographic Surveillance System (HDSS) data records symptoms of diarrhea in children under the age of 5 years at the community level. Cholera surveillance in Matlab currently uses hospital-based data. The objective of this study is to determine whether increases in cholera in Matlab can be detected earlier by using HDSS diarrhea symptom data in a syndromic surveillance analysis, when compared to hospital admissions for cholera. HDSS diarrhea symptom data and hospital admissions for cholera in children under 5 years of age over a 2-year period were analyzed with the syndromic surveillance statistical program EARS (Early Aberration Reporting System). Dates when significant increases in either symptoms or cholera cases occurred were compared to one another. The analysis revealed that there were 43 days over 16 months when the cholera cases or diarrhea symptoms increased significantly. There were 8 months when both data sets detected days with significant increases. In 5 of the 8 months, increases in diarrheal symptoms occurred before increases of cholera cases. The increases in symptoms occurred between 1 and 15 days before the increases in cholera cases. The results suggest that the HDSS survey data may be able to detect an increase in cholera before an increase in hospital admissions is seen. However, there was no direct link between diarrheal symptom increases and cholera cases, and this, as well as other methodological weaknesses, should be taken into consideration.

  10. A new MATLAB/Simulink model of triple-junction solar cell and MPPT based on artificial neural networks for photovoltaic energy systems

    Directory of Open Access Journals (Sweden)

    Hegazy Rezk

    2015-09-01

    Full Text Available This paper presents a new Matlab/Simulink model of a PV module and a maximum power point tracking (MPPT system for high efficiency InGaP/InGaAs/Ge triple-junction solar cell. The proposed technique is based on Artificial Neural Network. The equivalent circuit model of the triple-junction solar cell includes the parameters of each sub-cell. It is also include the effect of the temperature variations on the energy gap of each sub-cell as well as the diode reverse saturation currents. The implementation of a PV model is based on the triple-junction solar cell in the form of masked block in Matlab/Simulink software package that has a user-friendly icon and dialog. It is fast and accurate technique to follow the maximum power point. The simulation results of the proposed MPPT technique are compared with Perturb and Observe MPPT technique. The output power and energy of the proposed technique are higher than that of the Perturb and Observe MPPT technique. The proposed technique increases the output energy per day for a one PV module from 3.37 kW h to 3.75 kW h, i.e. a percentage of 11.28%.

  11. MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells.

    Science.gov (United States)

    Courtney, Jane; Woods, Elena; Scholz, Dimitri; Hall, William W; Gautier, Virginie W

    2015-01-01

    We introduce here MATtrack, an open source MATLAB-based computational platform developed to process multi-Tiff files produced by a photo-conversion time lapse protocol for live cell fluorescent microscopy. MATtrack automatically performs a series of steps required for image processing, including extraction and import of numerical values from Multi-Tiff files, red/green image classification using gating parameters, noise filtering, background extraction, contrast stretching and temporal smoothing. MATtrack also integrates a series of algorithms for quantitative image analysis enabling the construction of mean and standard deviation images, clustering and classification of subcellular regions and injection point approximation. In addition, MATtrack features a simple user interface, which enables monitoring of Fluorescent Signal Intensity in multiple Regions of Interest, over time. The latter encapsulates a region growing method to automatically delineate the contours of Regions of Interest selected by the user, and performs background and regional Average Fluorescence Tracking, and automatic plotting. Finally, MATtrack computes convenient visualization and exploration tools including a migration map, which provides an overview of the protein intracellular trajectories and accumulation areas. In conclusion, MATtrack is an open source MATLAB-based software package tailored to facilitate the analysis and visualization of large data files derived from real-time live cell fluorescent microscopy using photoconvertible proteins. It is flexible, user friendly, compatible with Windows, Mac, and Linux, and a wide range of data acquisition software. MATtrack is freely available for download at eleceng.dit.ie/courtney/MATtrack.zip.

  12. Development and verification of the CATHENA GUI

    International Nuclear Information System (INIS)

    Chin, T.

    2008-01-01

    This paper presents the development and verification of a graphical user interface for CATHENA MOD-3.5d. The thermalhydraulic computer code CATHENA has been developed to simulate the physical behaviour of the hydraulic components in nuclear reactors and experimental facilities. A representation of the facility is developed as an ASCII text file and used by CATHENA to perform the simulation. The existing method of manual generation of idealizations of a physical system for performing thermal hydraulic analysis is complex, time-consuming and prone to errors. An overview is presented of the CATHENA GUI and its depiction of a CATHENA idealization through the manipulation of a visual collection of objects. The methodologies and rigour involved in the verification of the CATHENA GUI will be discussed. (author)

  13. Parametric design of silo steel framework of concrete mixing station based on the finite element method and MATLAB

    Directory of Open Access Journals (Sweden)

    Long Hui

    2016-01-01

    Full Text Available When the structure of the silo steel framework of concrete mixing station is designed, In most cases, the dimension parameters, shape parameters and position parameters of silo steel framework beams are changed as the productivity adjustment of the concrete mixing station, but the structure types of silo steel framework will remain the same. In order to acquire strength of silo steel framework rapidly and efficiently, it is need to provide specialized parametric strength computational software for engineering staff who does not understand the three-dimensional software such as PROE and finite element analysis software. By the finite element methods(FEM, the parametric stress calculation modal of the silo steel framework of concrete mixing station is established, which includes dimension parameters, shape parameters, position parameters and applied load parameters of each beams, and then the parametric calculation program is written with MATLAB. The stress equations reflect the internal relationship between the stress of the silo steel frames with the dimension parameters, shape parameters, position parameters and load parameters. Finally, an example is presented, the calculation results show the stress of all members and the size and location of the maximum stress, which agrees well with realistic cases.

  14. A MATLAB-based eye tracking control system using non-invasive helmet head restraint in the macaque.

    Science.gov (United States)

    De Luna, Paolo; Mohamed Mustafar, Mohamed Faiz Bin; Rainer, Gregor

    2014-09-30

    Tracking eye position is vital for behavioral and neurophysiological investigations in systems and cognitive neuroscience. Infrared camera systems which are now available can be used for eye tracking without the need to surgically implant magnetic search coils. These systems are generally employed using rigid head fixation in monkeys, which maintains the eye in a constant position and facilitates eye tracking. We investigate the use of non-rigid head fixation using a helmet that constrains only general head orientation and allows some freedom of movement. We present a MATLAB software solution to gather and process eye position data, present visual stimuli, interact with various devices, provide experimenter feedback and store data for offline analysis. Our software solution achieves excellent timing performance due to the use of data streaming, instead of the traditionally employed data storage mode for processing analog eye position data. We present behavioral data from two monkeys, demonstrating that adequate performance levels can be achieved on a simple fixation paradigm and show how performance depends on parameters such as fixation window size. Our findings suggest that non-rigid head restraint can be employed for behavioral training and testing on a variety of gaze-dependent visual paradigms, reducing the need for rigid head restraint systems for some applications. While developed for macaque monkey, our system of course can work equally well for applications in human eye tracking where head constraint is undesirable. Copyright © 2014. Published by Elsevier B.V.

  15. An Accelerator Control Middle Layer Using MATLAB

    International Nuclear Information System (INIS)

    Portmann, Gregory J.; Corbett, Jeff; Terebilo, Andrei

    2005-01-01

    Matlab is an interpretive programming language originally developed for convenient use with the LINPACK and EISPACK libraries. Matlab is appealing for accelerator physics because it is matrix-oriented, provides an active workspace for system variables, powerful graphics capabilities, built-in math libraries, and platform independence. A number of accelerator software toolboxes have been written in Matlab -- the Accelerator Toolbox (AT) for model-based machine simulations, LOCO for on-line model calibration, and Matlab Channel Access (MCA) to connect with EPICS. The function of the MATLAB ''MiddleLayer'' is to provide a scripting language for machine simulations and on-line control, including non-EPICS based control systems. The MiddleLayer has simplified and streamlined development of high-level applications including configuration control, energy ramp, orbit correction, photon beam steering, ID compensation, beam-based alignment, tune correction and response matrix measurement. The database-driven Middle Layer software is largely machine-independent and easy to port. Six accelerators presently use the software package with more scheduled to come on line soon

  16. A MATLAB based Distributed Real-time Simulation of Lander-Orbiter-Earth Communication for Lunar Missions

    Science.gov (United States)

    Choudhury, Diptyajit; Angeloski, Aleksandar; Ziah, Haseeb; Buchholz, Hilmar; Landsman, Andre; Gupta, Amitava; Mitra, Tiyasa

    Lunar explorations often involve use of a lunar lander , a rover [1],[2] and an orbiter which rotates around the moon with a fixed radius. The orbiters are usually lunar satellites orbiting along a polar orbit to ensure visibility with respect to the rover and the Earth Station although with varying latency. Communication in such deep space missions is usually done using a specialized protocol like Proximity-1[3]. MATLAB simulation of Proximity-1 have been attempted by some contemporary researchers[4] to simulate all features like transmission control, delay etc. In this paper it is attempted to simulate, in real time, the communication between a tracking station on earth (earth station), a lunar orbiter and a lunar rover using concepts of Distributed Real-time Simulation(DRTS).The objective of the simulation is to simulate, in real-time, the time varying communication delays associated with the communicating elements with a facility to integrate specific simulation modules to study different aspects e.g. response due to a specific control command from the earth station to be executed by the rover. The hardware platform comprises four single board computers operating as stand-alone real time systems (developed by MATLAB xPC target and inter-networked using UDP-IP protocol). A time triggered DRTS approach is adopted. The earth station, the orbiter and the rover are programmed as three standalone real-time processes representing the communicating elements in the system. Communication from one communicating element to another constitutes an event which passes a state message from one element to another, augmenting the state of the latter. These events are handled by an event scheduler which is the fourth real-time process. The event scheduler simulates the delay in space communication taking into consideration the distance between the communicating elements. A unique time synchronization algorithm is developed which takes into account the large latencies in space

  17. Detection of Lock on Radar System Based on Ultrasonic US 100 Sensor And Arduino Uno R3 With Image Processing GUI

    Science.gov (United States)

    Baskoro, F.; Reynaldo, B. R.

    2018-04-01

    The development of electronics technology especially in the field of microcontroller occurs very rapidly. There have been many applications and useful use of microcontroller in everyday life as well as in laboratory research. In this study used Arduino Uno R3 as microcontroller-based platform ATMega328 as a sensor distance meter to know the distance of an object with high accuracy. The method used is to utilize the function Timer / Counter in Arduino UNO R3. On the Arduino Uno R3 platform, there is ATMEL ATmega328 microcontroller which has a frequency generating speed up to 20 MHz, 16-bit enumeration capability and using C language as its programming. With the Arduino Uno R3 platform, the ATmega328 microcontroller can be programmed with Arduino IDE software that is simpler and easier because it has been supported by libraries and many support programs. The result of this research is distance measurement to know the location of an object using US ultrasonic wave sensor US 100 with Arduino Uno R3 based on ATMega328 microcontroller which then the result will be displayed using Image Processing.

  18. Development of GUI systems for the MIDAS code

    International Nuclear Information System (INIS)

    Kim, K.R.; Park, S.H.; Kim, D.H.

    2004-01-01

    MIDAS is being developed at KAERI based on MELCOR as an integrated severe accident analysis code with existing model modification and new model addition. MIDAS was restructured to avoid the pointer based variable referencing style of MELCOR, and enhanced the memory effectiveness using the dynamic allocation method of Fortran 90. This paper describes recent activities of developing the GUI environments for MIDAS code at KAERI. Up to now, we have developed the four PC-based subsystems, which are IEDIT, IPLOT, SATS and HyperKAMG. IEDIT is an input management system that can read MELCOR input files and display its information in the Window panels. Users can modify each item in the panel and the input file will be modified according to that changes. IPLOT is a simple plotting system that can draw MIDAS plot variables trend graphs. SATS is developed as a severe accident training simulator that can display nuclear plant behavior graphically. Moreover SATS provides several controllable pumps and valves which appeared in the severe accidence. Together with SATS and the online severe accident guidance HyperKAMG, combined properly, severe accident mitigation scenarios could be presented graphically and dramatically without any change of MELCOR inputs. GUI development as a part of a severe accident management program package, MIDAS. (author)

  19. Digital speech processing using Matlab

    CERN Document Server

    Gopi, E S

    2014-01-01

    Digital Speech Processing Using Matlab deals with digital speech pattern recognition, speech production model, speech feature extraction, and speech compression. The book is written in a manner that is suitable for beginners pursuing basic research in digital speech processing. Matlab illustrations are provided for most topics to enable better understanding of concepts. This book also deals with the basic pattern recognition techniques (illustrated with speech signals using Matlab) such as PCA, LDA, ICA, SVM, HMM, GMM, BPN, and KSOM.

  20. Matlab differential and integral calculus

    CERN Document Server

    Lopez, Cesar

    2014-01-01

    MATLAB is a high-level language and environment for numerical computation, visualization, and programming. Using MATLAB, you can analyze data, develop algorithms, and create models and applications. The language, tools, and built-in math functions enable you to explore multiple approaches and reach a solution faster than with spreadsheets or traditional programming languages, such as C/C++ or Java. MATLAB Differential and Integral Calculus introduces you to the MATLAB language with practical hands-on instructions and results, allowing you to quickly achieve your goals. In addition to givi

  1. Matlab programming for numerical analysis

    CERN Document Server

    Lopez, Cesar

    2014-01-01

    MATLAB is a high-level language and environment for numerical computation, visualization, and programming. Using MATLAB, you can analyze data, develop algorithms, and create models and applications. The language, tools, and built-in math functions enable you to explore multiple approaches and reach a solution faster than with spreadsheets or traditional programming languages, such as C/C++ or Java. Programming MATLAB for Numerical Analysis introduces you to the MATLAB language with practical hands-on instructions and results, allowing you to quickly achieve your goals. You will first become

  2. Guidance from the Graphical User Interface (GUI) Experience: What GUI Teaches about Technology Access.

    Science.gov (United States)

    National Council on Disability, Washington, DC.

    This report investigates the use of the graphical user interface (GUI) in computer programs, the problems it creates for individuals with visual impairments or blindness, and advocacy efforts concerning this issue, which have been targeted primarily at Microsoft, producer of Windows. The report highlights the concerns of individuals with visual…

  3. Performance Assessment and Translation of Physiologically Based Pharmacokinetic Models From acslX to Berkeley Madonna, MATLAB, and R Language: Oxytetracycline and Gold Nanoparticles As Case Examples.

    Science.gov (United States)

    Lin, Zhoumeng; Jaberi-Douraki, Majid; He, Chunla; Jin, Shiqiang; Yang, Raymond S H; Fisher, Jeffrey W; Riviere, Jim E

    2017-07-01

    Many physiologically based pharmacokinetic (PBPK) models for environmental chemicals, drugs, and nanomaterials have been developed to aid risk and safety assessments using acslX. However, acslX has been rendered sunset since November 2015. Alternative modeling tools and tutorials are needed for future PBPK applications. This forum article aimed to: (1) demonstrate the performance of 4 PBPK modeling software packages (acslX, Berkeley Madonna, MATLAB, and R language) tested using 2 existing models (oxytetracycline and gold nanoparticles); (2) provide a tutorial of PBPK model code conversion from acslX to Berkeley Madonna, MATLAB, and R language; (3) discuss the advantages and disadvantages of each software package in the implementation of PBPK models in toxicology, and (4) share our perspective about future direction in this field. Simulation results of plasma/tissue concentrations/amounts of oxytetracycline and gold from different models were compared visually and statistically with linear regression analyses. Simulation results from the original models were correlated well with results from the recoded models, with time-concentration/amount curves nearly superimposable and determination coefficients of 0.86-1.00. Step-by-step explanations of the recoding of the models in different software programs are provided in the Supplementary Data. In summary, this article presents a tutorial of PBPK model code conversion for a small molecule and a nanoparticle among 4 software packages, and a performance comparison of these software packages in PBPK model implementation. This tutorial helps beginners learn PBPK modeling, provides suggestions for selecting a suitable tool for future projects, and may lead to the transition from acslX to alternative modeling tools. © The Author 2017. Published by Oxford University Press on behalf of the Society of Toxicology. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  4. Infrastructure for Rapid Development of Java GUI Programs

    Science.gov (United States)

    Jones, Jeremy; Hostetter, Carl F.; Wheeler, Philip

    2006-01-01

    The Java Application Shell (JAS) is a software framework that accelerates the development of Java graphical-user-interface (GUI) application programs by enabling the reuse of common, proven GUI elements, as distinguished from writing custom code for GUI elements. JAS is a software infrastructure upon which Java interactive application programs and graphical user interfaces (GUIs) for those programs can be built as sets of plug-ins. JAS provides an application- programming interface that is extensible by application-specific plugins that describe and encapsulate both specifications of a GUI and application-specific functionality tied to the specified GUI elements. The desired GUI elements are specified in Extensible Markup Language (XML) descriptions instead of in compiled code. JAS reads and interprets these descriptions, then creates and configures a corresponding GUI from a standard set of generic, reusable GUI elements. These elements are then attached (again, according to the XML descriptions) to application-specific compiled code and scripts. An application program constructed by use of JAS as its core can be extended by writing new plug-ins and replacing existing plug-ins. Thus, JAS solves many problems that Java programmers generally solve anew for each project, thereby reducing development and testing time.

  5. Perancangan Kendali Pid Dengan Matlab

    OpenAIRE

    Sukamta, Sri

    2010-01-01

    Perancangan PID Controller selama ini menggunakan metoda trial and error dengan perhitungan yangmemakan waktu lama. MatLab yang dilengkapi Control Toolbox, membantu perancang untuk melihatrespon berbagai kombinasi konstanta dengan variasi input yang berbeda. Penggunaan MatLab ini sangatmembantu perancang dalam menentukan kombinasi di antara P, I, dan D Controller untuk menghasilkansistem pengaturan yang baik dan sederhana.

  6. Matpar: Parallel Extensions for MATLAB

    Science.gov (United States)

    Springer, P. L.

    1998-01-01

    Matpar is a set of client/server software that allows a MATLAB user to take advantage of a parallel computer for very large problems. The user can replace calls to certain built-in MATLAB functions with calls to Matpar functions.

  7. A Total Factor Productivity Toolbox for MATLAB

    NARCIS (Netherlands)

    B.M. Balk (Bert); J. Barbero (Javier); J.L. Zofío (José)

    2018-01-01

    textabstractTotal Factor Productivity Toolbox is a new package for MATLAB that includes functions to calculate the main Total Factor Productivity (TFP) indices and their decompositions, based on Shephard’s distance functions and using Data Envelopment Analysis (DEA) programming techniques. The

  8. EasyInterface: A toolkit for rapid development of GUIs for research prototype tools

    OpenAIRE

    Doménech, Jesús; Genaim, Samir; Johnsen, Einar Broch; Schlatte, Rudolf

    2017-01-01

    In this paper we describe EasyInterface, an open-source toolkit for rapid development of web-based graphical user interfaces (GUIs). This toolkit addresses the need of researchers to make their research prototype tools available to the community, and integrating them in a common environment, rapidly and without being familiar with web programming or GUI libraries in general. If a tool can be executed from a command-line and its output goes to the standard output, then in few minutes one can m...

  9. Faults Detection in a Photovoltaic Generator by Using Matlab Simulink and the chipKIT Max32 Board

    Directory of Open Access Journals (Sweden)

    Riadh Khenfer

    2014-01-01

    Full Text Available This paper presents a laboratory with equipment and an algorithm for teaching graduate students the monitoring and the diagnosis of PV arrays. The contribution is the presentation of an algorithm to detect and localize the fault, in photovoltaic generator when a limited number of voltage sensors are used. An I-V curve tracer using a capacitive load is exploited to measure the I-V characteristics of PV arrays. Such measurement allows characterization of PV arrays on-site, under real operating conditions, and provides also information for the detection of potential array anomalies. This I-V curve tracer is based on a microcontroller board family called chipKIT Max32 which is a popular platform for physical computing. A user program can be developed visually on a PC side via the graphical user interface (GUI in Matlab Simulink, where the chipKIT Max32 of Digilent which is a low-cost board is designed for use with the Arduinompid software. The obtained results from the partial shade default showed the effectiveness of the proposed diagnosis method and the good functioning of this board with the Matlab/Simulink environment.

  10. Overview of GSE as a multifunctional GUI

    Science.gov (United States)

    Kurtovich, Boyan; Malangone, Fabio; Voss, David L.; Carssow, Douglas B.; Fritz, Theodore A.; Mavretic, Anton

    2009-08-01

    Ground Support Equipment (GSE) [1] is a versatile and multifunctional graphical user interface (GUI) and a software/hardware platform. It is a custom-designed system executed in the LabVIEW programming language to serve as an instrument health monitor for the Loss Cone Imager (LCI) satellite project. GSE mimics the behavior of the onboard Experiment Computer System (ECS). Its functions comprise the measurement of voltage, current, and power, as well as acting as a safety mechanism in case of any anomalous condition (e.g., over-current and/or over-voltage situation). Individual log files record the sessions during which data is gathered and analyzed. Safety/warning alarm flags shall be 'visible' from any individual window/tab. Analog-to-Digital Conversion (ADC) particle group measurements will be displayed on six individual panels. GSE will be supplemented with a comprehensive user's manual for added clarity.

  11. BiplotGUI: Interactive Biplots in R

    Directory of Open Access Journals (Sweden)

    Anthony la Grange

    2009-06-01

    Full Text Available Biplots simultaneously provide information on both the samples and the variables ofa data matrix in two- or three-dimensional representations. The BiplotGUI package provides a graphical user interface for the construction of, interaction with, and manipulation of biplots in R. The samples are represented as points, with coordinates determined either by the choice of biplot, principal coordinate analysis or multidimensional scaling. Various transformations and dissimilarity metrics are available. Information on the original variables is incorporated by linear or non-linear calibrated axes. Goodness-of-t measures are provided. Additional descriptors can be superimposed, including convex hulls, alpha-bags, point densities and classication regions. Amongst the interactive features are dynamic variable value prediction, zooming and point and axis drag-and-drop. Output can easily be exported to the R workspace for further manipulation. Three-dimensional biplots are incorporated via the rgl package. The user requires almost no knowledge of R syntax.

  12. An Accelerator Control Middle Layer Using MATLAB

    International Nuclear Information System (INIS)

    Portmann, Gregory J.; Corbett, Jeff; Terebilo, Andrei

    2005-01-01

    Matlab is a matrix manipulation language originally developed to be a convenient language for using the LINPACK and EISPACK libraries. What makes Matlab so appealing for accelerator physics is the combination of a matrix oriented programming language, an active workspace for system variables, powerful graphics capability, built-in math libraries, and platform independence. A number of software toolboxes for accelerators have been written in Matlab--the Accelerator Toolbox (AT) for machine simulations, LOCO for accelerator calibration, Matlab Channel Access Toolbox (MCA) for EPICS connections, and the Middle Layer. This paper will describe the ''middle layer'' software toolbox that resides between the high-level control applications and the low-level accelerator control system. This software was a collaborative effort between ALS (LBNL) and SPEAR3 (SSRL) but easily ports to other machines. Five accelerators presently use this software. The high-level Middle Layer functionality includes energy ramp, configuration control (save/restore), global orbit correction, local photon beam steering, insertion device compensation, beam-based alignment, tune correction, response matrix measurement, and script-based programs for machine physics studies

  13. Flexible missile autopilot design studies with PC-MATLAB/386

    Science.gov (United States)

    Ruth, Michael J.

    1989-01-01

    Development of a responsive, high-bandwidth missile autopilot for airframes which have structural modes of unusually low frequency presents a challenging design task. Such systems are viable candidates for modern, state-space control design methods. The PC-MATLAB interactive software package provides an environment well-suited to the development of candidate linear control laws for flexible missile autopilots. The strengths of MATLAB include: (1) exceptionally high speed (MATLAB's version for 80386-based PC's offers benchmarks approaching minicomputer and mainframe performance); (2) ability to handle large design models of several hundred degrees of freedom, if necessary; and (3) broad extensibility through user-defined functions. To characterize MATLAB capabilities, a simplified design example is presented. This involves interactive definition of an observer-based state-space compensator for a flexible missile autopilot design task. MATLAB capabilities and limitations, in the context of this design task, are then summarized.

  14. GUI program to compute probabilistic seismic hazard analysis

    International Nuclear Information System (INIS)

    Shin, Jin Soo; Chi, H. C.; Cho, J. C.; Park, J. H.; Kim, K. G.; Im, I. S.

    2005-12-01

    The first stage of development of program to compute probabilistic seismic hazard is completed based on Graphic User Interface (GUI). The main program consists of three part - the data input processes, probabilistic seismic hazard analysis and result output processes. The first part has developed and others are developing now in this term. The probabilistic seismic hazard analysis needs various input data which represent attenuation formulae, seismic zoning map, and earthquake event catalog. The input procedure of previous programs based on text interface take a much time to prepare the data. The data cannot be checked directly on screen to prevent input erroneously in existing methods. The new program simplifies the input process and enable to check the data graphically in order to minimize the artificial error within the limits of the possibility

  15. GUI program to compute probabilistic seismic hazard analysis

    International Nuclear Information System (INIS)

    Shin, Jin Soo; Chi, H. C.; Cho, J. C.; Park, J. H.; Kim, K. G.; Im, I. S.

    2006-12-01

    The development of program to compute probabilistic seismic hazard is completed based on Graphic User Interface(GUI). The main program consists of three part - the data input processes, probabilistic seismic hazard analysis and result output processes. The probabilistic seismic hazard analysis needs various input data which represent attenuation formulae, seismic zoning map, and earthquake event catalog. The input procedure of previous programs based on text interface take a much time to prepare the data. The data cannot be checked directly on screen to prevent input erroneously in existing methods. The new program simplifies the input process and enable to check the data graphically in order to minimize the artificial error within limits of the possibility

  16. KALMTOOL for use with MATLAB

    DEFF Research Database (Denmark)

    Nørgaard, Peter Magnus; Ravn, Ole; Poulsen, Niels Kjølstad

    2003-01-01

    The KALMTOOL toolbox is a set of MATLAB tools for state estimation for nonlinear systems. The toolbox contains functions for extended Kalman filtering as well as for two new filters called the DD1 filter and the DD2 filter. The toolbox specifically addresses the problem of not having observations...... available at all sampling instants. All functions are available as m-functions but for faster (much faster!) execution, the DD1 and DD2 filters are also available as C Mex files for MATLAB under Windows and Linux. The toolbox requires MATLAB 6. No additional toolboxes are required....

  17. Matlab-Based Modeling and Simulations to Study the Performance of Different MPPT Techniques Used for Photovoltaic Systems under Partially Shaded Conditions

    Directory of Open Access Journals (Sweden)

    Jehun Hahm

    2015-01-01

    Full Text Available A pulse-width-modulator- (PWM- based sliding mode controller is developed to study the effects of partial shade, temperature, and insolation on the performance of maximum power point tracking (MPPT used in photovoltaic (PV systems. Under partially shaded conditions and temperature, PV array characteristics become more complex, with multiple power-voltage maxima. MPPT is an automatic control technique to adjust power interfaces and deliver power for a diverse range of insolation values, temperatures, and partially shaded modules. The PV system is tested using two conventional algorithms: the Perturb and Observe (P&O algorithm and the Incremental Conductance (IncCond algorithm, which are simple to implement for a PV array. The proposed method applied a model to simulate the performance of the PV system for solar energy usage, which is compared to the conventional methods under nonuniform insolation improving the PV system utilization efficiency and allowing optimization of the system performance. The PWM-based sliding mode controller successfully overcomes the issues presented by nonuniform conditions and tracks the global MPP. In this paper, the PV system consists of a solar module under shade connected to a boost converter that is controlled by three different algorithms and is generated using Matlab/Simulink.

  18. TecLines: A MATLAB-Based Toolbox for Tectonic Lineament Analysis from Satellite Images and DEMs, Part 1: Line Segment Detection and Extraction

    Directory of Open Access Journals (Sweden)

    Mehdi Rahnama

    2014-06-01

    Full Text Available Geological structures, such as faults and fractures, appear as image discontinuities or lineaments in remote sensing data. Geologic lineament mapping is a very important issue in geo-engineering, especially for construction site selection, seismic, and risk assessment, mineral exploration and hydrogeological research. Classical methods of lineaments extraction are based on semi-automated (or visual interpretation of optical data and digital elevation models. We developed a freely available Matlab based toolbox TecLines (Tectonic Lineament Analysis for locating and quantifying lineament patterns using satellite data and digital elevation models. TecLines consists of a set of functions including frequency filtering, spatial filtering, tensor voting, Hough transformation, and polynomial fitting. Due to differences in the mathematical background of the edge detection and edge linking procedure as well as the breadth of the methods, we introduce the approach in two-parts. In this first study, we present the steps that lead to edge detection. We introduce the data pre-processing using selected filters in spatial and frequency domains. We then describe the application of the tensor-voting framework to improve position and length accuracies of the detected lineaments. We demonstrate the robustness of the approach in a complex area in the northeast of Afghanistan using a panchromatic QUICKBIRD-2 image with 1-meter resolution. Finally, we compare the results of TecLines with manual lineament extraction, and other lineament extraction algorithms, as well as a published fault map of the study area.

  19. OpenNFT: An open-source Python/Matlab framework for real-time fMRI neurofeedback training based on activity, connectivity and multivariate pattern analysis.

    Science.gov (United States)

    Koush, Yury; Ashburner, John; Prilepin, Evgeny; Sladky, Ronald; Zeidman, Peter; Bibikov, Sergei; Scharnowski, Frank; Nikonorov, Artem; De Ville, Dimitri Van

    2017-08-01

    Neurofeedback based on real-time functional magnetic resonance imaging (rt-fMRI) is a novel and rapidly developing research field. It allows for training of voluntary control over localized brain activity and connectivity and has demonstrated promising clinical applications. Because of the rapid technical developments of MRI techniques and the availability of high-performance computing, new methodological advances in rt-fMRI neurofeedback become possible. Here we outline the core components of a novel open-source neurofeedback framework, termed Open NeuroFeedback Training (OpenNFT), which efficiently integrates these new developments. This framework is implemented using Python and Matlab source code to allow for diverse functionality, high modularity, and rapid extendibility of the software depending on the user's needs. In addition, it provides an easy interface to the functionality of Statistical Parametric Mapping (SPM) that is also open-source and one of the most widely used fMRI data analysis software. We demonstrate the functionality of our new framework by describing case studies that include neurofeedback protocols based on brain activity levels, effective connectivity models, and pattern classification approaches. This open-source initiative provides a suitable framework to actively engage in the development of novel neurofeedback approaches, so that local methodological developments can be easily made accessible to a wider range of users. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

  20. Une introduction à MATLAB c

    OpenAIRE

    CREMONA, Christian; LABORATOIRE CENTRAL DES PONTS ET CHAUSSEES - LCPC

    2002-01-01

    MATLAB c présente toutes les fonctionnalités des approches récentes de la programmation : programmation objet basée sur des hiérarchies de classes, programmation événementielle du graphisme. MATLAB c présente une aide en ligne très complète sous format html des différentes fontions accessibles. COMPTE RENDU DE RECHERCHE

  1. TecLines: A MATLAB-Based Toolbox for Tectonic Lineament Analysis from Satellite Images and DEMs, Part 2: Line Segments Linking and Merging

    Directory of Open Access Journals (Sweden)

    Mehdi Rahnama

    2014-11-01

    Full Text Available Extraction and interpretation of tectonic lineaments is one of the routines for mapping large areas using remote sensing data. However, this is a subjective and time-consuming process. It is difficult to choose an optimal lineament extraction method in order to reduce subjectivity and obtain vectors similar to what an analyst would manually extract. The objective of this study is the implementation, evaluation and comparison of Hough transform, segment merging and polynomial fitting methods towards automated tectonic lineament mapping. For this purpose we developed a new MATLAB-based toolbox (TecLines. The proposed toolbox capabilities were validated using a synthetic Digital Elevation Model (DEM and tested along in the Andarab fault zone (Afghanistan where specific fault structures are known. In this study, we used filters in both frequency and spatial domains and the tensor voting framework to produce binary edge maps. We used the Hough transform to extract linear image discontinuities. We used B-spline as a polynomial curve fitting method to eliminate artificial line segments that are out of interest and to link discontinuous segments with similar trends. We performed statistical analyses in order to compare the final image discontinuities maps with existing references map.

  2. MATLAB-based algorithm to estimate depths of isolated thin dike-like sources using higher-order horizontal derivatives of magnetic anomalies.

    Science.gov (United States)

    Ekinci, Yunus Levent

    2016-01-01

    This paper presents an easy-to-use open source computer algorithm (code) for estimating the depths of isolated single thin dike-like source bodies by using numerical second-, third-, and fourth-order horizontal derivatives computed from observed magnetic anomalies. The approach does not require a priori information and uses some filters of successive graticule spacings. The computed higher-order horizontal derivative datasets are used to solve nonlinear equations for depth determination. The solutions are independent from the magnetization and ambient field directions. The practical usability of the developed code, designed in MATLAB R2012b (MathWorks Inc.), was successfully examined using some synthetic simulations with and without noise. The algorithm was then used to estimate the depths of some ore bodies buried in different regions (USA, Sweden, and Canada). Real data tests clearly indicated that the obtained depths are in good agreement with those of previous studies and drilling information. Additionally, a state-of-the-art inversion scheme based on particle swarm optimization produced comparable results to those of the higher-order horizontal derivative analyses in both synthetic and real anomaly cases. Accordingly, the proposed code is verified to be useful in interpreting isolated single thin dike-like magnetized bodies and may be an alternative processing technique. The open source code can be easily modified and adapted to suit the benefits of other researchers.

  3. Introduction to Artificial Vision through Laboratory Guides Using Matlab

    Directory of Open Access Journals (Sweden)

    Verónica Londoño-Osorio

    2013-11-01

    Full Text Available This paper presents the design of two laboratory guides in artificial vision for a course which aims to introduce students to the different areas of specialization of his career. Therefore, the designed practices motivate and provide relevant content to the student, and to encourage research in the area of image processing. The first guide presents an introductory practice that explores the basic commands for image processing by programming a GUI in Matlab, and a second practice in which you use an image recognition algorithm, which compares the color characteristics of facial or objects images. The discussion of the results, challenges and recommendations for the development of each practice session are explained. The survey answers of the students are displayed. This survey allows checking their level of acceptance for the design and content of practice and motivation to continue studying in the image processing area. Finally, comparisons with laboratory guides that were designed in other universities are made.

  4. Optoelectronic polarimeter controlled by a graphical user interface of Matlab

    International Nuclear Information System (INIS)

    Vilardy, J M; Torres, R; Jimenez, C J

    2017-01-01

    We show the design and implementation of an optical polarimeter using electronic control. The polarimeter has a software with a graphical user interface (GUI) that controls the optoelectronic setup and captures the optical intensity measurement, and finally, this software evaluates the Stokes vector of a state of polarization (SOP) by means of the synchronous detection of optical waves. The proposed optoelectronic polarimeter can determine the Stokes vector of a SOP in a rapid and efficient way. Using the polarimeter proposed in this paper, the students will be able to observe (in an optical bench) and understand the different interactions of the SOP when the optical waves pass through to the linear polarizers and retarder waves plates. The polarimeter prototype could be used as a main tool for the students in order to learn the theory and experimental aspects of the SOP for optical waves via the Stokes vector measurement. The proposed polarimeter controlled by a GUI of Matlab is more attractive and suitable to teach and to learn the polarization of optical waves. (paper)

  5. Fault Diagnosis System of Wind Turbine Generator Based on Petri Net

    Science.gov (United States)

    Zhang, Han

    Petri net is an important tool for discrete event dynamic systems modeling and analysis. And it has great ability to handle concurrent phenomena and non-deterministic phenomena. Currently Petri nets used in wind turbine fault diagnosis have not participated in the actual system. This article will combine the existing fuzzy Petri net algorithms; build wind turbine control system simulation based on Siemens S7-1200 PLC, while making matlab gui interface for migration of the system to different platforms.

  6. The Java Series. GUI Building with Swing

    CERN Multimedia

    CERN. Geneva

    2000-01-01

    The Swing Java package contains all the components that you expect to see in a modern User Interface, from buttons that contain pictures to trees and grids. It is a big library but it's designed to have the appropriate complexity for the task at hand - if something is simple you don't have to write much code to get it done, but if you want the power to manipulate and deeply customise it you also have it. This tutorial will introduce you to the basic set of components that Swing provides and to the mechanisms behind them. It will provide an overview of what you can do with Swing, even if you are new to GUI programming. However, if you want to follow closely the mechanisms behind what's being explained, it is convenient to have some basic knowledge of the main concepts of Java AWT (class hierarchy and event model) as provided by the previous tutorial of the Java Series. Organiser(s): M.Marquina and R.Ramos /IT-User Support

  7. SinCHet: a MATLAB toolbox for single cell heterogeneity analysis in cancer.

    Science.gov (United States)

    Li, Jiannong; Smalley, Inna; Schell, Michael J; Smalley, Keiran S M; Chen, Y Ann

    2017-09-15

    Single-cell technologies allow characterization of transcriptomes and epigenomes for individual cells under different conditions and provide unprecedented resolution for researchers to investigate cellular heterogeneity in cancer. The SinCHet ( gle ell erogeneity) toolbox is developed in MATLAB and has a graphical user interface (GUI) for visualization and user interaction. It analyzes both continuous (e.g. mRNA expression) and binary omics data (e.g. discretized methylation data). The toolbox does not only quantify cellular heterogeneity using S hannon P rofile (SP) at different clonal resolutions but also detects heterogeneity differences using a D statistic between two populations. It is defined as the area under the P rofile of S hannon D ifference (PSD). This flexible tool provides a default clonal resolution using the change point of PSD detected by multivariate adaptive regression splines model; it also allows user-defined clonal resolutions for further investigation. This tool provides insights into emerging or disappearing clones between conditions, and enables the prioritization of biomarkers for follow-up experiments based on heterogeneity or marker differences between and/or within cell populations. The SinCHet software is freely available for non-profit academic use. The source code, example datasets, and the compiled package are available at http://labpages2.moffitt.org/chen/software/ . ann.chen@moffitt.org. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

  8. Parallel tools GUI framework-DOE SBIR phase I final technical report

    Energy Technology Data Exchange (ETDEWEB)

    Galarowicz, James [Argo Navis Technologies LLC., Annapolis, MD (United States)

    2013-12-05

    Many parallel performance, profiling, and debugging tools require a graphical way of displaying the very large datasets typically gathered from high performance computing (HPC) applications. Most tool projects create their graphical user interfaces (GUI) from scratch, many times spending their project resources on simply redeveloping commonly used infrastructure. Our goal was to create a multiplatform GUI framework, based on Nokia/Digia’s popular Qt libraries, which will specifically address the needs of these parallel tools. The Parallel Tools GUI Framework (PTGF) uses a plugin architecture facilitating rapid GUI development and reduced development costs for new and existing tool projects by allowing the reuse of many common GUI elements, called “widgets.” Widgets created include, 2D data visualizations, a source code viewer with syntax highlighting, and integrated help and welcome screens. Application programming interface (API) design was focused on minimizing the time to getting a functional tool working. Having a standard, unified, and userfriendly interface which operates on multiple platforms will benefit HPC application developers by reducing training time and allowing users to move between tools rapidly during a single session. However, Argo Navis Technologies LLC will not be submitting a DOE SBIR Phase II proposal and commercialization plan for the PTGF project. Our preliminary estimates for gross income over the next several years was based upon initial customer interest and income generated by similar projects. Unfortunately, as we further assessed the market during Phase I, we grew to realize that there was not enough demand to warrant such a large investment. While we do find that the project is worth our continued investment of time and money, we do not think it worthy of the DOE's investment at this time. We are grateful that the DOE has afforded us the opportunity to make this assessment, and come to this conclusion.

  9. Kinematic analysis of the finger exoskeleton using MATLAB/Simulink.

    Science.gov (United States)

    Nasiłowski, Krzysztof; Awrejcewicz, Jan; Lewandowski, Donat

    2014-01-01

    A paralyzed and not fully functional part of human body can be supported by the properly designed exoskeleton system with motoric abilities. It can help in rehabilitation, or movement of a disabled/paralyzed limb. Both suitably selected geometry and specialized software are studied applying the MATLAB environment. A finger exoskeleton was the base for MATLAB/Simulink model. Specialized software, such as MATLAB/Simulink give us an opportunity to optimize calculation reaching precise results, which help in next steps of design process. The calculations carried out yield information regarding movement relation between three functionally connected actuators and showed distance and velocity changes during the whole simulation time.

  10. Matlab Tools: An Alternative to Planning Systems in Brachytherapy Treatments

    International Nuclear Information System (INIS)

    Herrera, Higmar; Rodriguez, Mercedes; Rodriguez, Miguel

    2006-01-01

    This work proposes the use of the Matlab environment to obtain the treatment dose based on the reported data by Krishnaswamy and Liu et al. The comparison with reported measurements is showed for the Amersham source model. For the 3M source model, measurements with TLDs and a Monte Carlo simulation are compared to the data obtained by Matlab. The difference for the Amersham model is well under the 15% recommended by the IAEA and for the 3M model, although the difference is greater, the results are consistent. The good agreement to the reported data allows the Matlab calculations to be used in daily brachytherapy treatments

  11. Advanced processing and simulation of MRS data using the FID appliance (FID-A)-An open source, MATLAB-based toolkit.

    Science.gov (United States)

    Simpson, Robin; Devenyi, Gabriel A; Jezzard, Peter; Hennessy, T Jay; Near, Jamie

    2017-01-01

    To introduce a new toolkit for simulation and processing of magnetic resonance spectroscopy (MRS) data, and to demonstrate some of its novel features. The FID appliance (FID-A) is an open-source, MATLAB-based software toolkit for simulation and processing of MRS data. The software is designed specifically for processing data with multiple dimensions (eg, multiple radiofrequency channels, averages, spectral editing dimensions). It is equipped with functions for importing data in the formats of most major MRI vendors (eg, Siemens, Philips, GE, Agilent) and for exporting data into the formats of several common processing software packages (eg, LCModel, jMRUI, Tarquin). This paper introduces the FID-A software toolkit and uses examples to demonstrate its novel features, namely 1) the use of a spectral registration algorithm to carry out useful processing routines automatically, 2) automatic detection and removal of motion-corrupted scans, and 3) the ability to perform several major aspects of the MRS computational workflow from a single piece of software. This latter feature is illustrated through both high-level processing of in vivo GABA-edited MEGA-PRESS MRS data, as well as detailed quantum mechanical simulations to generate an accurate LCModel basis set for analysis of the same data. All of the described processing steps resulted in a marked improvement in spectral quality compared with unprocessed data. Fitting of MEGA-PRESS data using a customized basis set resulted in improved fitting accuracy compared with a generic MEGA-PRESS basis set. The FID-A software toolkit enables high-level processing of MRS data and accurate simulation of in vivo MRS experiments. Magn Reson Med 77:23-33, 2017. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

  12. Test Generator for MATLAB Simulations

    Science.gov (United States)

    Henry, Joel

    2011-01-01

    MATLAB Automated Test Tool, version 3.0 (MATT 3.0) is a software package that provides automated tools that reduce the time needed for extensive testing of simulation models that have been constructed in the MATLAB programming language by use of the Simulink and Real-Time Workshop programs. MATT 3.0 runs on top of the MATLAB engine application-program interface to communicate with the Simulink engine. MATT 3.0 automatically generates source code from the models, generates custom input data for testing both the models and the source code, and generates graphs and other presentations that facilitate comparison of the outputs of the models and the source code for the same input data. Context-sensitive and fully searchable help is provided in HyperText Markup Language (HTML) format.

  13. MAPA: an interactive accelerator design code with GUI

    Science.gov (United States)

    Bruhwiler, David L.; Cary, John R.; Shasharina, Svetlana G.

    1999-06-01

    The MAPA code is an interactive accelerator modeling and design tool with an X/Motif GUI. MAPA has been developed in C++ and makes full use of object-oriented features. We present an overview of its features and describe how users can independently extend the capabilities of the entire application, including the GUI. For example, a user can define a new model for a focusing or accelerating element. If the appropriate form is followed, and the new element is "registered" with a single line in the specified file, then the GUI will fully support this user-defined element type after it has been compiled and then linked to the existing application. In particular, the GUI will bring up windows for modifying any relevant parameters of the new element type. At present, one can use the GUI for phase space tracking, finding fixed points and generating line plots for the Twiss parameters, the dispersion and the accelerator geometry. The user can define new types of simulations which the GUI will automatically support by providing a menu option to execute the simulation and subsequently rendering line plots of the resulting data.

  14. MAPA: an interactive accelerator design code with GUI

    International Nuclear Information System (INIS)

    Bruhwiler, David L.; Cary, John R.; Shasharina, Svetlana G.

    1999-01-01

    The MAPA code is an interactive accelerator modeling and design tool with an X/Motif GUI. MAPA has been developed in C++ and makes full use of object-oriented features. We present an overview of its features and describe how users can independently extend the capabilities of the entire application, including the GUI. For example, a user can define a new model for a focusing or accelerating element. If the appropriate form is followed, and the new element is 'registered' with a single line in the specified file, then the GUI will fully support this user-defined element type after it has been compiled and then linked to the existing application. In particular, the GUI will bring up windows for modifying any relevant parameters of the new element type. At present, one can use the GUI for phase space tracking, finding fixed points and generating line plots for the Twiss parameters, the dispersion and the accelerator geometry. The user can define new types of simulations which the GUI will automatically support by providing a menu option to execute the simulation and subsequently rendering line plots of the resulting data

  15. Transportation channels calculation method in MATLAB

    International Nuclear Information System (INIS)

    Averyanov, G.P.; Budkin, V.A.; Dmitrieva, V.V.; Osadchuk, I.O.; Bashmakov, Yu.A.

    2014-01-01

    Output devices and charged particles transport channels are necessary components of any modern particle accelerator. They differ both in sizes and in terms of focusing elements depending on particle accelerator type and its destination. A package of transport line designing codes for magnet optical channels in MATLAB environment is presented in this report. Charged particles dynamics in a focusing channel can be studied easily by means of the matrix technique. MATLAB usage is convenient because its information objects are matrixes. MATLAB allows the use the modular principle to build the software package. Program blocks are small in size and easy to use. They can be executed separately or commonly. A set of codes has a user-friendly interface. Transport channel construction consists of focusing lenses (doublets and triplets). The main of the magneto-optical channel parameters are total length and lens position and parameters of the output beam in the phase space (channel acceptance, beam emittance - beam transverse dimensions, particles divergence and image stigmaticity). Choice of the channel operation parameters is based on the conditions for satisfying mutually competing demands. And therefore the channel parameters calculation is carried out by using the search engine optimization techniques.

  16. Signals and systems with MATLAB

    CERN Document Server

    Yang, Won Young; Song, Ik H; Cho, Yong S

    2009-01-01

    Covers some of the theoretical foundations and mathematical derivations that can be used in higher-level related subjects such as signal processing, communication, and control, minimizing the mathematical difficulty and computational burden. This book illustrates the usage of MATLAB and Simulink for signal and system analysis and design.

  17. Matlab Software for Spatial Panels

    NARCIS (Netherlands)

    Elhorst, J.Paul

    2014-01-01

    Elhorst provides Matlab routines to estimate spatial panel data models at his website. This article extends these routines to include the bias correction procedure proposed by Lee and Yu if the spatial panel data model contains spatial and/or time-period fixed effects, the direct and indirect

  18. RPI-MATLAB-simulator

    DEFF Research Database (Denmark)

    Williams, J.; Lu, Y.; Abel, Sarah Maria Niebe

    2013-01-01

    main goals: 1. Provide an intuitive and easily extendable platform for research and education in multibody dynamics; 2. Maintain an evolving code base of useful algorithms and analysis tools for multibody dynamics problems. Although research often focuses on a specific subset of problems, work too...

  19. Multi-platform SCADA GUI Regression Testing at CERN

    CERN Document Server

    Burkimsher, P C; Klikovits, S

    2011-01-01

    The JCOP Framework is a toolkit used widely at CERN for the development of industrial control systems in several domains (i.e. experiments, accelerators and technical infrastructure). The software development started 10 years ago and there is now a large base of production systems running it. For the success of the project, it was essential to formalize and automate the quality assurance process. This paper will present the overall testing strategy and will describe in detail mechanisms used for GUI testing. The choice of a commercial tool (Squish) and the architectural features making it appropriate for our multi-platform environment will be described. Practical difficulties encountered when using the tool in the CERN context are discussed as well as how these were addressed. In the light of initial experience, the test code itself has been recently reworked in object-oriented style to facilitate future maintenance and extension. The current reporting process is described, as well as future plans for easy re...

  20. Solving applied mathematical problems with Matlab

    CERN Document Server

    Xue, Dingyu

    2008-01-01

    Computer Mathematics Language-An Overview. Fundamentals of MATLAB Programming. Calculus Problems. MATLAB Computations of Linear Algebra Problems. Integral Transforms and Complex Variable Functions. Solutions to Nonlinear Equations and Optimization Problems. MATLAB Solutions to Differential Equation Problems. Solving Interpolations and Approximations Problems. Solving Probability and Mathematical Statistics Problems. Nontraditional Solution Methods for Mathematical Problems.

  1. OMPC: an Open-Source MATLAB-to-Python Compiler.

    Science.gov (United States)

    Jurica, Peter; van Leeuwen, Cees

    2009-01-01

    Free access to scientific information facilitates scientific progress. Open-access scientific journals are a first step in this direction; a further step is to make auxiliary and supplementary materials that accompany scientific publications, such as methodological procedures and data-analysis tools, open and accessible to the scientific community. To this purpose it is instrumental to establish a software base, which will grow toward a comprehensive free and open-source language of technical and scientific computing. Endeavors in this direction are met with an important obstacle. MATLAB((R)), the predominant computation tool in many fields of research, is a closed-source commercial product. To facilitate the transition to an open computation platform, we propose Open-source MATLAB((R))-to-Python Compiler (OMPC), a platform that uses syntax adaptation and emulation to allow transparent import of existing MATLAB((R)) functions into Python programs. The imported MATLAB((R)) modules will run independently of MATLAB((R)), relying on Python's numerical and scientific libraries. Python offers a stable and mature open source platform that, in many respects, surpasses commonly used, expensive commercial closed source packages. The proposed software will therefore facilitate the transparent transition towards a free and general open-source lingua franca for scientific computation, while enabling access to the existing methods and algorithms of technical computing already available in MATLAB((R)). OMPC is available at http://ompc.juricap.com.

  2. Digital signal processing using MATLAB

    CERN Document Server

    Schilling, Robert L

    2016-01-01

    Focus on the development, implementation, and application of modern DSP techniques with DIGITAL SIGNAL PROCESSING USING MATLAB(R), 3E. Written in an engaging, informal style, this edition immediately captures your attention and encourages you to explore each critical topic. Every chapter starts with a motivational section that highlights practical examples and challenges that you can solve using techniques covered in the chapter. Each chapter concludes with a detailed case study example, a chapter summary with learning outcomes, and practical homework problems cross-referenced to specific chapter sections for your convenience. DSP Companion software accompanies each book to enable further investigation. The DSP Companion software operates with MATLAB(R) and provides intriguing demonstrations as well as interactive explorations of analysis and design concepts.

  3. MatLab 1b

    DEFF Research Database (Denmark)

    Kristiansen, Heidi; Kaas, Thomas; Freil, Ole

    Bogen indeholder fire kapitler: ’Tal i spil’, ’Spejlinger og mønstre’, ’Mønstre med farver, figurer og tal’ og ’Længde og vægt’. MATLAB: •bygger på en undersøgende og problemorienteret tilgang til matematikken •understøtter læringsmålstyret undervisning •har fokus på faglige samtaler og undersøge......Bogen indeholder fire kapitler: ’Tal i spil’, ’Spejlinger og mønstre’, ’Mønstre med farver, figurer og tal’ og ’Længde og vægt’. MATLAB: •bygger på en undersøgende og problemorienteret tilgang til matematikken •understøtter læringsmålstyret undervisning •har fokus på faglige samtaler og...

  4. Automated processing of thermal infrared images of Osservatorio Vesuviano permanent surveillance network by using Matlab code

    Science.gov (United States)

    Sansivero, Fabio; Vilardo, Giuseppe; Caputo, Teresa

    2017-04-01

    The permanent thermal infrared surveillance network of Osservatorio Vesuviano (INGV) is composed of 6 stations which acquire IR frames of fumarole fields in the Campi Flegrei caldera and inside the Vesuvius crater (Italy). The IR frames are uploaded to a dedicated server in the Surveillance Center of Osservatorio Vesuviano in order to process the infrared data and to excerpt all the information contained. In a first phase the infrared data are processed by an automated system (A.S.I.R.A. Acq- Automated System of IR Analysis and Acquisition) developed in Matlab environment and with a user-friendly graphic user interface (GUI). ASIRA daily generates time-series of residual temperature values of the maximum temperatures observed in the IR scenes after the removal of seasonal effects. These time-series are displayed in the Surveillance Room of Osservatorio Vesuviano and provide information about the evolution of shallow temperatures field of the observed areas. In particular the features of ASIRA Acq include: a) efficient quality selection of IR scenes, b) IR images co-registration in respect of a reference frame, c) seasonal correction by using a background-removal methodology, a) filing of IR matrices and of the processed data in shared archives accessible to interrogation. The daily archived records can be also processed by ASIRA Plot (Matlab code with GUI) to visualize IR data time-series and to help in evaluating inputs parameters for further data processing and analysis. Additional processing features are accomplished in a second phase by ASIRA Tools which is Matlab code with GUI developed to extract further information from the dataset in automated way. The main functions of ASIRA Tools are: a) the analysis of temperature variations of each pixel of the IR frame in a given time interval, b) the removal of seasonal effects from temperature of every pixel in the IR frames by using an analytic approach (removal of sinusoidal long term seasonal component by using a

  5. QE::GUI – A Graphical User Interface for Quality Estimation

    Directory of Open Access Journals (Sweden)

    Avramidis Eleftherios

    2017-10-01

    Full Text Available Despite its wide applicability, Quality Estimation (QE of Machine Translation (MT poses a difficult entry barrier since there are no open source tools with a graphical user interface (GUI. Here we present a tool in this direction by connecting the back-end of the QE decision-making mechanism with a web-based GUI. The interface allows the user to post requests to the QE engine and get a visual response with the results. Additionally we provide pre-trained QE models for easier launching of the app. The tool is written in Python so that it can leverage the rich natural language processing capabilities of the popular dynamic programming language, which is at the same time supported by top web-server environments.

  6. Using workstation GUIs in HEP, X-Windows, Motif and the Nirvana project

    International Nuclear Information System (INIS)

    Edel, M.; Kryiakopoulos, J.; Lebrun, P.; Ren, B.; Kallenbach, J.; Iourcha, K.

    1992-10-01

    We present four small, high quality, Motif based tools for high energy physicists and discuss some of the less obvious work that is necessary to fully take advantage of graphical user interfaces (GUIs). Histo-Scope and NPlot are interactive data display programs. Histo-Scope is for viewing data as it is collected in running analysis or data acquisition programs, NPlot, for plotting data from text files. Visajet is an interface for the ISAJET event simulation program. It gives users a fast way to configure ISAJET and displays ISAJET events in a three dimensional phase space display that users can rotate and manipulate with the mouse. NEdit is a GUI style plain text editor

  7. FLASH Interface; a GUI for managing runtime parameters in FLASH simulations

    Science.gov (United States)

    Walker, Christopher; Tzeferacos, Petros; Weide, Klaus; Lamb, Donald; Flocke, Norbert; Feister, Scott

    2017-10-01

    We present FLASH Interface, a novel graphical user interface (GUI) for managing runtime parameters in simulations performed with the FLASH code. FLASH Interface supports full text search of available parameters; provides descriptions of each parameter's role and function; allows for the filtering of parameters based on categories; performs input validation; and maintains all comments and non-parameter information already present in existing parameter files. The GUI can be used to edit existing parameter files or generate new ones. FLASH Interface is open source and was implemented with the Electron framework, making it available on Mac OSX, Windows, and Linux operating systems. The new interface lowers the entry barrier for new FLASH users and provides an easy-to-use tool for experienced FLASH simulators. U.S. Department of Energy (DOE), NNSA ASC/Alliances Center for Astrophysical Thermonuclear Flashes, U.S. DOE NNSA ASC through the Argonne Institute for Computing in Science, U.S. National Science Foundation.

  8. MatLab 1a

    DEFF Research Database (Denmark)

    Kristiansen, Heidi; Kaas, Thomas; Freil, Ole

    Bogen indeholder fire kapitler: ’Tæl og brug tal’, ’Undersøg figurer’, ’Plus- og minusproblemer’ og ’Statistik og chance’. MATLAB: •bygger på en undersøgende og problemorienteret tilgang til matematikken •understøtter læringsmålstyret undervisning •har fokus på faglige samtaler og undersøgelser...

  9. MatLab 0. Matematiklaboratoriet

    DEFF Research Database (Denmark)

    Kristiansen, Heidi; Kaas, Thomas; Freil, Ole

    Bogen indeholder fem kapitler: ’Tælle og tal’, ’Figurer og mønstre’, ’Hvor mange?’, ’Måling’ og ’Data og diagrammer’. MATLAB: •bygger på en undersøgende og problemorienteret tilgang til matematikken •understøtter læringsmålstyret undervisning •har fokus på faglige samtaler og undersøgelser, der...

  10. A MATLAB companion for multivariable calculus

    CERN Document Server

    Cooper, Jeffery

    2001-01-01

    Offering a concise collection of MatLab programs and exercises to accompany a third semester course in multivariable calculus, A MatLab Companion for Multivariable Calculus introduces simple numerical procedures such as numerical differentiation, numerical integration and Newton''s method in several variables, thereby allowing students to tackle realistic problems. The many examples show students how to use MatLab effectively and easily in many contexts. Numerous exercises in mathematics and applications areas are presented, graded from routine to more demanding projects requiring some programming. Matlab M-files are provided on the Harcourt/Academic Press web site at http://www.harcourt-ap.com/matlab.html.* Computer-oriented material that complements the essential topics in multivariable calculus* Main ideas presented with examples of computations and graphics displays using MATLAB * Numerous examples of short code in the text, which can be modified for use with the exercises* MATLAB files are used to implem...

  11. Development of MATLAB software to control data acquisition from a multichannel systems multi-electrode array.

    Science.gov (United States)

    Messier, Erik

    2016-08-01

    A Multichannel Systems (MCS) microelectrode array data acquisition (DAQ) unit is used to collect multichannel electrograms (EGM) from a Langendorff perfused rabbit heart system to study sudden cardiac death (SCD). MCS provides software through which data being processed by the DAQ unit can be displayed and saved, but this software's combined utility with MATLAB is not very effective. MCSs software stores recorded EGM data in a MathCad (MCD) format, which is then converted to a text file format. These text files are very large, and it is therefore very time consuming to import the EGM data into MATLAB for real-time analysis. Therefore, customized MATLAB software was developed to control the acquisition of data from the MCS DAQ unit, and provide specific laboratory accommodations for this study of SCD. The developed DAQ unit control software will be able to accurately: provide real time display of EGM signals; record and save EGM signals in MATLAB in a desired format; and produce real time analysis of the EGM signals; all through an intuitive GUI.

  12. SimHap GUI: an intuitive graphical user interface for genetic association analysis.

    Science.gov (United States)

    Carter, Kim W; McCaskie, Pamela A; Palmer, Lyle J

    2008-12-25

    Researchers wishing to conduct genetic association analysis involving single nucleotide polymorphisms (SNPs) or haplotypes are often confronted with the lack of user-friendly graphical analysis tools, requiring sophisticated statistical and informatics expertise to perform relatively straightforward tasks. Tools, such as the SimHap package for the R statistics language, provide the necessary statistical operations to conduct sophisticated genetic analysis, but lacks a graphical user interface that allows anyone but a professional statistician to effectively utilise the tool. We have developed SimHap GUI, a cross-platform integrated graphical analysis tool for conducting epidemiological, single SNP and haplotype-based association analysis. SimHap GUI features a novel workflow interface that guides the user through each logical step of the analysis process, making it accessible to both novice and advanced users. This tool provides a seamless interface to the SimHap R package, while providing enhanced functionality such as sophisticated data checking, automated data conversion, and real-time estimations of haplotype simulation progress. SimHap GUI provides a novel, easy-to-use, cross-platform solution for conducting a range of genetic and non-genetic association analyses. This provides a free alternative to commercial statistics packages that is specifically designed for genetic association analysis.

  13. C language program analysis system (CLAS) part 1: graphical user interface (GUI)

    International Nuclear Information System (INIS)

    Bhattacharjee, A.K.; Seby, A.; Sen, Gopa; Dhodapkar, S.D.

    1994-01-01

    CLAS (C Language Program Analysis System) is a reverse engineering tool intended for use in the verification and validation (V and V) phase of software programs developed in the ANSI C language. From the source code, CLAS generates data pertaining to two conceptual models of software programs viz., Entity-Relationship (E-R) model and Control Flow Graphs (CFG) model. Browsing tools within CLAS, make use of this data, to provide different graphical views of the project. Static analysis tools have been developed earlier for analysing assembly language programs. CLAS is a continuation of this work to provide automated support in analysis of ANSI C language programs. CLAS provides an integrated Graphical User Interface (GUI) based environment under which programs can be analysed into the above mentioned models and the analysed data can be viewed using the browsing tools. The GUI of CLAS is implemented using an OPEN LOOK compliant tool kit XVIEW on Sun SPARC IPC workstation running Sun OS 4.1.1 rev. B. This report describes the GUI of CLAS. CLAS is also expected to be useful in other contexts which may involve understanding architecture/structure of already developed C language programs. Such requirements can arise while carrying out activities like code modification, parallelising etc. (author). 5 refs., 13 figs., 1 appendix

  14. Easy Access to HPC Resources through the Application GUI

    KAUST Repository

    van Waveren, Matthijs; Seif, Ahmed; Hassanein, Nasr; Moon, David; O'Byrnes, Niall; Clo, Alain M.; Murugan, Karthikeyan; Arena, Antonio

    2016-01-01

    and supercomputer that automates the transfer of input data and job submission and also the retrieval of results to the researcher’s local workstation. The innovation is that the user now submits his jobs from within the application GUI on his workstation, and does

  15. Matlab modeling of ITER CODAC

    International Nuclear Information System (INIS)

    Pangione, L.; Lister, J.B.

    2008-01-01

    The ITER CODAC (COntrol, Data Access and Communication) conceptual design resulted from 2 years of activity. One result was a proposed functional partitioning of CODAC into different CODAC Systems, each of them partitioned into other CODAC Systems. Considering the large size of this project, simple use of human language assisted by figures would certainly be ineffective in creating an unambiguous description of all interactions and all relations between these Systems. Moreover, the underlying design is resident in the mind of the designers, who must consider all possible situations that could happen to each system. There is therefore a need to model the whole of CODAC with a clear and preferably graphical method, which allows the designers to verify the correctness and the consistency of their project. The aim of this paper is to describe the work started on ITER CODAC modeling using Matlab/Simulink. The main feature of this tool is the possibility of having a simple, graphical, intuitive representation of a complex system and ultimately to run a numerical simulation of it. Using Matlab/Simulink, each CODAC System was represented in a graphical and intuitive form with its relations and interactions through the definition of a small number of simple rules. In a Simulink diagram, each system was represented as a 'black box', both containing, and connected to, a number of other systems. In this way it is possible to move vertically between systems on different levels, to show the relation of membership, or horizontally to analyse the information exchange between systems at the same level. This process can be iterated, starting from a global diagram, in which only CODAC appears with the Plant Systems and the external sites, and going deeper down to the mathematical model of each CODAC system. The Matlab/Simulink features for simulating the whole top diagram encourage us to develop the idea of completing the functionalities of all systems in order to finally have a full

  16. NLSEmagic: Nonlinear Schrödinger equation multi-dimensional Matlab-based GPU-accelerated integrators using compact high-order schemes

    Science.gov (United States)

    Caplan, R. M.

    2013-04-01

    We present a simple to use, yet powerful code package called NLSEmagic to numerically integrate the nonlinear Schrödinger equation in one, two, and three dimensions. NLSEmagic is a high-order finite-difference code package which utilizes graphic processing unit (GPU) parallel architectures. The codes running on the GPU are many times faster than their serial counterparts, and are much cheaper to run than on standard parallel clusters. The codes are developed with usability and portability in mind, and therefore are written to interface with MATLAB utilizing custom GPU-enabled C codes with the MEX-compiler interface. The packages are freely distributed, including user manuals and set-up files. Catalogue identifier: AEOJ_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEOJ_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 124453 No. of bytes in distributed program, including test data, etc.: 4728604 Distribution format: tar.gz Programming language: C, CUDA, MATLAB. Computer: PC, MAC. Operating system: Windows, MacOS, Linux. Has the code been vectorized or parallelized?: Yes. Number of processors used: Single CPU, number of GPU processors dependent on chosen GPU card (max is currently 3072 cores on GeForce GTX 690). Supplementary material: Setup guide, Installation guide. RAM: Highly dependent on dimensionality and grid size. For typical medium-large problem size in three dimensions, 4GB is sufficient. Keywords: Nonlinear Schröodinger Equation, GPU, high-order finite difference, Bose-Einstien condensates. Classification: 4.3, 7.7. Nature of problem: Integrate solutions of the time-dependent one-, two-, and three-dimensional cubic nonlinear Schrödinger equation. Solution method: The integrators utilize a fully-explicit fourth-order Runge-Kutta scheme in time

  17. Development of a model using the MATLAB System identification toolbox to estimate 222Rn equilibrium factor from CR-39 based passive measurements

    International Nuclear Information System (INIS)

    Abo-Elmagd, M.; Sadek, A.M.

    2014-01-01

    Can and Bare method is a widely used passive method for measuring the equilibrium factor F through the determination of the track density ratio between bare (D) and filtered (D o ) detectors. The dimensions of the used diffusion chamber are altering the deposition ratios of Po-isotopes on the chamber walls as well as the ratios of the existing alpha emitters in air. Then the measured filtered track density and therefore the resultant equilibrium factor is changed according to the diffusion chamber dimensions. For this reason, high uncertainty was expected in the measured F using different diffusion chambers. In the present work, F is derived as a function of both track density ratio (D/D o ) and the dimensions of the used diffusion chambers (its volume to the total internal surface area; V/A). The accuracy of the derived formula was verified using the black-box modeling technique via the MATLAB System identification toolbox. The results show that the uncertainty of the calculated F by using the derived formula of F (D/D o , V/A) is only 5%. The obtained uncertainty ensures the quality of the derived function to calculate F using diffusion chambers with wide range of dimensions. - Highlights: • The manuscript is aimed to develop the Can and Bare method for measuring the equilibrium factor F. • A new formula F (D/D o , V/A) is obtained taking the dimension of the used cup (V/A) into consideration. • The accuracy of the derived formula was verified using the black-box modeling technique via the MATLAB. • The derived function covers the range of the widely used diffusion chambers (r ≤ 3.5 cm and h ≤ 10 cm). • The reproducibility of F estimated using this model is quite good (5% deviation) for different 8 cups

  18. ECONOMIC MODELING PROCESSES USING MATLAB

    Directory of Open Access Journals (Sweden)

    Anamaria G. MACOVEI

    2008-06-01

    Full Text Available To study economic phenomena and processes using mathem atical modeling, and to determine the approximatesolution to a problem we need to choose a method of calculation and a numerical computer program, namely thepackage of programs MatLab. Any economic process or phenomenon is a mathematical description of h is behavior,and thus draw up an economic and mathematical model that has the following stages: formulation of the problem, theanalysis process modeling, the production model and design verification, validation and implementation of the model.This article is presented an economic model and its modeling is using mathematical equations and software packageMatLab, which helps us approximation effective solution. As data entry is considered the net cost, the cost of direct andtotal cost and the link between them. I presented the basic formula for determining the total cost. Economic modelcalculations were made in MatLab software package and with graphic representation of its interpretation of the resultsachieved in terms of our specific problem.

  19. Modelling real solar cell using PSCAD/MATLAB

    Energy Technology Data Exchange (ETDEWEB)

    Ramos, Sergio; Silva, Marco; Fernandes, Filipe; Vale, Zita [Polytechnic of Porto (Portugal). GECAD - Knowledge Engineering and Decision Support Research Center

    2012-07-01

    This paper presents the development of a solar photovoltaic (PV) model based on PSCAD/EMTDC - Power System Computer Aided Design - including a mathematical model study. An additional algorithm has been implemented in MATLAB software in order to calculate several parameters required by the PSCAD developed model. All the simulation study has been performed in PSCAD/MATLAB software simulation tool. A real data base concerning irradiance, cell temperature and PV power generation was used in order to support the evaluation of the implemented PV model. (orig.)

  20. Digital signal processing with Matlab examples

    CERN Document Server

    Giron-Sierra, Jose Maria

    2017-01-01

    This is the first volume in a trilogy on modern Signal Processing. The three books provide a concise exposition of signal processing topics, and a guide to support individual practical exploration based on MATLAB programs. This book includes MATLAB codes to illustrate each of the main steps of the theory, offering a self-contained guide suitable for independent study. The code is embedded in the text, helping readers to put into practice the ideas and methods discussed. The book is divided into three parts, the first of which introduces readers to periodic and non-periodic signals. The second part is devoted to filtering, which is an important and commonly used application. The third part addresses more advanced topics, including the analysis of real-world non-stationary signals and data, e.g. structural fatigue, earthquakes, electro-encephalograms, birdsong, etc. The book’s last chapter focuses on modulation, an example of the intentional use of non-stationary signals.

  1. Menhir: An Environment for High Performance Matlab

    Directory of Open Access Journals (Sweden)

    Stéphane Chauveau

    1999-01-01

    Full Text Available In this paper we present Menhir a compiler for generating sequential or parallel code from the Matlab language. The compiler has been designed in the context of using Matlab as a specification language. One of the major features of Menhir is its retargetability to generate parallel and sequential C or Fortran code. We present the compilation process and the target system description for Menhir. Preliminary performances are given and compared with MCC, the MathWorks Matlab compiler.

  2. Cyclotron beam dynamic simulations in MATLAB

    International Nuclear Information System (INIS)

    Karamysheva, G.A.; Karamyshev, O.V.; Lepkina, O.E.

    2008-01-01

    MATLAB is useful for beam dynamic simulations in cyclotrons. Programming in an easy-to-use environment permits creation of models in a short space of time. Advanced graphical tools of MATLAB give good visualization features to created models. The beam dynamic modeling results with an example of two different cyclotron designs are presented. Programming with MATLAB opens wide possibilities of the development of the complex program, able to perform complete block of calculations for the design of the accelerators

  3. MatLab Script and Functional Programming

    Science.gov (United States)

    Shaykhian, Gholam Ali

    2007-01-01

    MatLab Script and Functional Programming: MatLab is one of the most widely used very high level programming languages for scientific and engineering computations. It is very user-friendly and needs practically no formal programming knowledge. Presented here are MatLab programming aspects and not just the MatLab commands for scientists and engineers who do not have formal programming training and also have no significant time to spare for learning programming to solve their real world problems. Specifically provided are programs for visualization. The MatLab seminar covers the functional and script programming aspect of MatLab language. Specific expectations are: a) Recognize MatLab commands, script and function. b) Create, and run a MatLab function. c) Read, recognize, and describe MatLab syntax. d) Recognize decisions, loops and matrix operators. e) Evaluate scope among multiple files, and multiple functions within a file. f) Declare, define and use scalar variables, vectors and matrices.

  4. Effective approach to spectroscopy and spectral analysis techniques using Matlab

    Science.gov (United States)

    Li, Xiang; Lv, Yong

    2017-08-01

    With the development of electronic information, computer and network, modern education technology has entered new era, which would give a great impact on teaching process. Spectroscopy and spectral analysis is an elective course for Optoelectronic Information Science and engineering. The teaching objective of this course is to master the basic concepts and principles of spectroscopy, spectral analysis and testing of basic technical means. Then, let the students learn the principle and technology of the spectrum to study the structure and state of the material and the developing process of the technology. MATLAB (matrix laboratory) is a multi-paradigm numerical computing environment and fourth-generation programming language. A proprietary programming language developed by MathWorks, MATLAB allows matrix manipulations, plotting of functions and data, Based on the teaching practice, this paper summarizes the new situation of applying Matlab to the teaching of spectroscopy. This would be suitable for most of the current school multimedia assisted teaching

  5. KEGGParser: parsing and editing KEGG pathway maps in Matlab.

    Science.gov (United States)

    Arakelyan, Arsen; Nersisyan, Lilit

    2013-02-15

    KEGG pathway database is a collection of manually drawn pathway maps accompanied with KGML format files intended for use in automatic analysis. KGML files, however, do not contain the required information for complete reproduction of all the events indicated in the static image of a pathway map. Several parsers and editors of KEGG pathways exist for processing KGML files. We introduce KEGGParser-a MATLAB based tool for KEGG pathway parsing, semiautomatic fixing, editing, visualization and analysis in MATLAB environment. It also works with Scilab. The source code is available at http://www.mathworks.com/matlabcentral/fileexchange/37561.

  6. Rapid BeagleBoard prototyping with MATLAB and Simulink

    CERN Document Server

    Qin, Fei

    2013-01-01

    This book is a fast-paced guide with practical, hands-on recipes which will show you how to prototype Beagleboard-based audio/video applications using Matlab/Simlink and Sourcery Codebench on a Windows host.Beagleboard Embedded Projects is great for students and academic researchers who have practical ideas and who want to build a proof-of-concept system on an embedded hardware platform quickly and efficiently. It is also useful for product design engineers who want to ratify their applications and reduce the time-to-market. It is assumed that you are familiar with Matlab/Simulink and have som

  7. Java expert GUI framework for CERN beam instrumentation systems

    International Nuclear Information System (INIS)

    Bart Pedersen, S.; Bozyigit, S.; Jackson, S.

    2012-01-01

    The CERN Beam Instrumentation Group's software section has recently performed a study of the tools used to produce Java expert GUI (Graphical User Interface) applications. This paper will present the analysis that was made to understand the requirements for generic components and the resulting tools including a collection of Java components that have been made available for a wider audience. The new expert GUI has already given very good results. Users can easily and quickly create a Java project with a pre-defined structure that will allow them to run an application in two mouse clicks. At the same time, they are able to add whatever components they need to libraries that are now common to all. The use of Maven is not completed and has led to some integration problems for our Java software architecture. Nevertheless, the handling of the library dependencies and the archetypes are very useful

  8. GeoTemp™ 1.0: A MATLAB-based program for the processing, interpretation and modelling of geological formation temperature measurements

    Science.gov (United States)

    Ricard, Ludovic P.; Chanu, Jean-Baptiste

    2013-08-01

    The evaluation of potential and resources during geothermal exploration requires accurate and consistent temperature characterization and modelling of the sub-surface. Existing interpretation and modelling approaches of 1D temperature measurements are mainly focusing on vertical heat conduction with only few approaches that deals with advective heat transport. Thermal regimes are strongly correlated to rock and fluid properties. Currently, no consensus exists for the identification of the thermal regime and the analysis of such dataset. We developed a new framework allowing the identification of thermal regimes by rock formations, the analysis and modelling of wireline logging and discrete temperature measurements by taking into account the geological, geophysical and petrophysics data. This framework has been implemented in the GeoTemp software package that allows the complete thermal characterization and modelling at the formation scale and that provides a set of standard tools for the processing wireline and discrete temperature data. GeoTempTM operates via a user friendly graphical interface written in Matlab that allows semi-automatic calculation, display and export of the results. Output results can be exported as Microsoft Excel spreadsheets or vector graphics of publication quality. GeoTemp™ is illustrated here with an example geothermal application from Western Australia and can be used for academic, teaching and professional purposes.

  9. Optical modeling activities for NASA's James Webb Space Telescope (JWST): IV. Overview and introduction of MATLAB based toolkits used to interface with optical design software

    Science.gov (United States)

    Howard, Joseph M.

    2007-09-01

    This paper is part four of a series on the ongoing optical modeling activities for the James Webb Space Telescope (JWST). The first two papers discussed modeling JWST on-orbit performance using wavefront sensitivities to predict line of sight motion induced blur, and stability during thermal transients. The third paper investigates the aberrations resulting from alignment and figure compensation of the controllable degrees of freedom (primary and secondary mirrors), which may be encountered during ground alignment and on-orbit commissioning of the observatory. The work here introduces some of the math software tools used to perform the work of the previous three papers of this series. NASA has recently approved these in-house tools for public release as open source, so this presentation also serves as a quick tutorial on their use. The tools are collections of functions written for use in MATLAB to interface with optical design software (CODE V, OSLO, and ZEMAX) using either COM or DDE communication protocol. The functions are discussed, and examples are given.

  10. Novel algorithm and MATLAB-based program for automated power law analysis of single particle, time-dependent mean-square displacement

    Science.gov (United States)

    Umansky, Moti; Weihs, Daphne

    2012-08-01

    In many physical and biophysical studies, single-particle tracking is utilized to reveal interactions, diffusion coefficients, active modes of driving motion, dynamic local structure, micromechanics, and microrheology. The basic analysis applied to those data is to determine the time-dependent mean-square displacement (MSD) of particle trajectories and perform time- and ensemble-averaging of similar motions. The motion of particles typically exhibits time-dependent power-law scaling, and only trajectories with qualitatively and quantitatively comparable MSD should be ensembled. Ensemble averaging trajectories that arise from different mechanisms, e.g., actively driven and diffusive, is incorrect and can result inaccurate correlations between structure, mechanics, and activity. We have developed an algorithm to automatically and accurately determine power-law scaling of experimentally measured single-particle MSD. Trajectories can then categorized and grouped according to user defined cutoffs of time, amplitudes, scaling exponent values, or combinations. Power-law fits are then provided for each trajectory alongside categorized groups of trajectories, histograms of power laws, and the ensemble-averaged MSD of each group. The codes are designed to be easily incorporated into existing user codes. We expect that this algorithm and program will be invaluable to anyone performing single-particle tracking, be it in physical or biophysical systems. Catalogue identifier: AEMD_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEMD_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 25 892 No. of bytes in distributed program, including test data, etc.: 5 572 780 Distribution format: tar.gz Programming language: MATLAB (MathWorks Inc.) version 7.11 (2010b) or higher, program

  11. Dexterity: A MATLAB-based analysis software suite for processing and visualizing data from tasks that measure arm or forelimb function.

    Science.gov (United States)

    Butensky, Samuel D; Sloan, Andrew P; Meyers, Eric; Carmel, Jason B

    2017-07-15

    Hand function is critical for independence, and neurological injury often impairs dexterity. To measure hand function in people or forelimb function in animals, sensors are employed to quantify manipulation. These sensors make assessment easier and more quantitative and allow automation of these tasks. While automated tasks improve objectivity and throughput, they also produce large amounts of data that can be burdensome to analyze. We created software called Dexterity that simplifies data analysis of automated reaching tasks. Dexterity is MATLAB software that enables quick analysis of data from forelimb tasks. Through a graphical user interface, files are loaded and data are identified and analyzed. These data can be annotated or graphed directly. Analysis is saved, and the graph and corresponding data can be exported. For additional analysis, Dexterity provides access to custom scripts created by other users. To determine the utility of Dexterity, we performed a study to evaluate the effects of task difficulty on the degree of impairment after injury. Dexterity analyzed two months of data and allowed new users to annotate the experiment, visualize results, and save and export data easily. Previous analysis of tasks was performed with custom data analysis, requiring expertise with analysis software. Dexterity made the tools required to analyze, visualize and annotate data easy to use by investigators without data science experience. Dexterity increases accessibility to automated tasks that measure dexterity by making analysis of large data intuitive, robust, and efficient. Copyright © 2017 Elsevier B.V. All rights reserved.

  12. Development of a model using the MATLAB System identification toolbox to estimate (222)Rn equilibrium factor from CR-39 based passive measurements.

    Science.gov (United States)

    Abo-Elmagd, M; Sadek, A M

    2014-12-01

    Can and Bare method is a widely used passive method for measuring the equilibrium factor F through the determination of the track density ratio between bare (D) and filtered (Do) detectors. The dimensions of the used diffusion chamber are altering the deposition ratios of Po-isotopes on the chamber walls as well as the ratios of the existing alpha emitters in air. Then the measured filtered track density and therefore the resultant equilibrium factor is changed according to the diffusion chamber dimensions. For this reason, high uncertainty was expected in the measured F using different diffusion chambers. In the present work, F is derived as a function of both track density ratio (D/Do) and the dimensions of the used diffusion chambers (its volume to the total internal surface area; V/A). The accuracy of the derived formula was verified using the black-box modeling technique via the MATLAB System identification toolbox. The results show that the uncertainty of the calculated F by using the derived formula of F (D/Do, V/A) is only 5%. The obtained uncertainty ensures the quality of the derived function to calculate F using diffusion chambers with wide range of dimensions. Copyright © 2014 Elsevier Ltd. All rights reserved.

  13. Java Expert GUI framework for CERN beam instrumentation systems

    CERN Document Server

    Bart Pedersen, S; Jackson, S

    2011-01-01

    The CERN Beam Instrumentation Group’s software section has recently performed a study of the tools used to produce Java expert GUI applications. This paper will present the analysis that was made to understand the requirements for generic components and the resulting tools including a collection of Java components that have been made available for a wider audience. The paper will also discuss the prospect of using Maven as the deployment tool with its implications for developers and users.

  14. Three-dimensional rendering of segmented object using matlab - biomed 2010.

    Science.gov (United States)

    Anderson, Jeffrey R; Barrett, Steven F

    2010-01-01

    The three-dimensional rendering of microscopic objects is a difficult and challenging task that often requires specialized image processing techniques. Previous work has been described of a semi-automatic segmentation process of fluorescently stained neurons collected as a sequence of slice images with a confocal laser scanning microscope. Once properly segmented, each individual object can be rendered and studied as a three-dimensional virtual object. This paper describes the work associated with the design and development of Matlab files to create three-dimensional images from the segmented object data previously mentioned. Part of the motivation for this work is to integrate both the segmentation and rendering processes into one software application, providing a seamless transition from the segmentation tasks to the rendering and visualization tasks. Previously these tasks were accomplished on two different computer systems, windows and Linux. This transition basically limits the usefulness of the segmentation and rendering applications to those who have both computer systems readily available. The focus of this work is to create custom Matlab image processing algorithms for object rendering and visualization, and merge these capabilities to the Matlab files that were developed especially for the image segmentation task. The completed Matlab application will contain both the segmentation and rendering processes in a single graphical user interface, or GUI. This process for rendering three-dimensional images in Matlab requires that a sequence of two-dimensional binary images, representing a cross-sectional slice of the object, be reassembled in a 3D space, and covered with a surface. Additional segmented objects can be rendered in the same 3D space. The surface properties of each object can be varied by the user to aid in the study and analysis of the objects. This inter-active process becomes a powerful visual tool to study and understand microscopic objects.

  15. Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

    Science.gov (United States)

    Chatziioannou, Aristotelis; Moulos, Panagiotis; Kolisis, Fragiskos N

    2009-10-27

    The microarray data analysis realm is ever growing through the development of various tools, open source and commercial. However there is absence of predefined rational algorithmic analysis workflows or batch standardized processing to incorporate all steps, from raw data import up to the derivation of significantly differentially expressed gene lists. This absence obfuscates the analytical procedure and obstructs the massive comparative processing of genomic microarray datasets. Moreover, the solutions provided, heavily depend on the programming skills of the user, whereas in the case of GUI embedded solutions, they do not provide direct support of various raw image analysis formats or a versatile and simultaneously flexible combination of signal processing methods. We describe here Gene ARMADA (Automated Robust MicroArray Data Analysis), a MATLAB implemented platform with a Graphical User Interface. This suite integrates all steps of microarray data analysis including automated data import, noise correction and filtering, normalization, statistical selection of differentially expressed genes, clustering, classification and annotation. In its current version, Gene ARMADA fully supports 2 coloured cDNA and Affymetrix oligonucleotide arrays, plus custom arrays for which experimental details are given in tabular form (Excel spreadsheet, comma separated values, tab-delimited text formats). It also supports the analysis of already processed results through its versatile import editor. Besides being fully automated, Gene ARMADA incorporates numerous functionalities of the Statistics and Bioinformatics Toolboxes of MATLAB. In addition, it provides numerous visualization and exploration tools plus customizable export data formats for seamless integration by other analysis tools or MATLAB, for further processing. Gene ARMADA requires MATLAB 7.4 (R2007a) or higher and is also distributed as a stand-alone application with MATLAB Component Runtime. Gene ARMADA provides a

  16. ENDVER-ENDVER/GUI, The ENDF File Verification Support Package

    International Nuclear Information System (INIS)

    Trkov, Andrej; Zerkin, V.; Cullen, Dermott E.

    2005-01-01

    1 - Description of program or function: Experimental and evaluated nuclear reaction data are compiled world-wide in EXFOR and in ENDF format, respectively. The ENDVER package can be used to convert EXFOR data into computational C4 format, display them and compare graphically with the contents of a specified evaluated data file. The package also contains utilities to retrieve selected materials from a master library in ENDF format, extract cross sections (including differential and double differential data) and output them in two-column PLOTTAB 'curves' format. IAEA1402/03: The ENVER/GUI version contains in addition to ENDVER, also the EXFOR and CINDA Databases (version 1.70 of January 2005) and software providing data search and presentation, the PREPRO ENDF pre-processing codes by D.E. Cullen (PREPRO-2002) and the ZVVIEW interactive graphic data display package. A new GUI (Graphics User Interface) is presented. EndVer and EXFOR/CINDA are directly accessible by the user through the GUI. 2 - Restrictions on the complexity of the problem: None

  17. Orthogonal transformations for change detection, Matlab code

    DEFF Research Database (Denmark)

    2005-01-01

    Matlab code to do multivariate alteration detection (MAD) analysis, maximum autocorrelation factor (MAF) analysis, canonical correlation analysis (CCA) and principal component analysis (PCA) on image data.......Matlab code to do multivariate alteration detection (MAD) analysis, maximum autocorrelation factor (MAF) analysis, canonical correlation analysis (CCA) and principal component analysis (PCA) on image data....

  18. Scientific computing with MATLAB and Octave

    CERN Document Server

    Quarteroni, Alfio; Gervasio, Paola

    2014-01-01

    This textbook is an introduction to Scientific Computing, in which several numerical methods for the computer-based solution of certain classes of mathematical problems are illustrated. The authors show how to compute the zeros, the extrema, and the integrals of continuous functions, solve linear systems, approximate functions using polynomials and construct accurate approximations for the solution of ordinary and partial differential equations. To make the format concrete and appealing, the programming environments Matlab and Octave are adopted as faithful companions. The book contains the solutions to several problems posed in exercises and examples, often originating from important applications. At the end of each chapter, a specific section is devoted to subjects which were not addressed in the book and contains bibliographical references for a more comprehensive treatment of the material. From the review: ".... This carefully written textbook, the third English edition, contains substantial new developme...

  19. NNCTRL - a CANCSD toolkit for MATLAB(R)

    DEFF Research Database (Denmark)

    Nørgård, Peter Magnus; Ravn, Ole; Poulsen, Niels Kjølstad

    1996-01-01

    A set of tools for computer-aided neuro-control system design (CANCSD) has been developed for the MATLAB environment. The tools can be used for construction and simulation of a variety of neural network based control systems. The design methods featured in the toolkit are: direct inverse control...

  20. Channel Access Client Toolbox for Matlab

    International Nuclear Information System (INIS)

    2002-01-01

    This paper reports on MATLAB Channel Access (MCA) Toolbox--MATLAB [1] interface to EPICS Channel Access (CA) client library. We are developing the toolbox for SPEAR3 accelerator controls, but it is of general use for accelerator and experimental physics applications programming. It is packaged as a MATLAB toolbox to allow easy development of complex CA client applications entirely in MATLAB. The benefits include: the ability to calculate and display parameters that use EPICS process variables as inputs, availability of MATLAB graphics tools for user interface design, and integration with the MATLABbased accelerator modeling software - Accelerator Toolbox [2-4]. Another purpose of this paper is to propose a feasible path to a synergy between accelerator control systems and accelerator simulation codes, the idea known as on-line accelerator model

  1. MATLAB as a tool as Analysis and Problem Solving Competency Development in Chemical Engineering Degree using MATLAB

    Directory of Open Access Journals (Sweden)

    Maria-Fernanda López-Pérez

    2016-10-01

    The principal purpose of this work is the students improvement using, as has been mentioned previously, MATLAB in a problem-based learning methodology. This methodology allows a more effective coordination in the degree. The present paper presents a real- world problem and the common elements of most problem-solving contexts and how is designed to function across all disciplines.

  2. Object-oriented Matlab adaptive optics toolbox

    Science.gov (United States)

    Conan, R.; Correia, C.

    2014-08-01

    Object-Oriented Matlab Adaptive Optics (OOMAO) is a Matlab toolbox dedicated to Adaptive Optics (AO) systems. OOMAO is based on a small set of classes representing the source, atmosphere, telescope, wavefront sensor, Deformable Mirror (DM) and an imager of an AO system. This simple set of classes allows simulating Natural Guide Star (NGS) and Laser Guide Star (LGS) Single Conjugate AO (SCAO) and tomography AO systems on telescopes up to the size of the Extremely Large Telescopes (ELT). The discrete phase screens that make the atmosphere model can be of infinite size, useful for modeling system performance on large time scales. OOMAO comes with its own parametric influence function model to emulate different types of DMs. The cone effect, altitude thickness and intensity profile of LGSs are also reproduced. Both modal and zonal modeling approach are implemented. OOMAO has also an extensive library of theoretical expressions to evaluate the statistical properties of turbulence wavefronts. The main design characteristics of the OOMAO toolbox are object-oriented modularity, vectorized code and transparent parallel computing. OOMAO has been used to simulate and to design the Multi-Object AO prototype Raven at the Subaru telescope and the Laser Tomography AO system of the Giant Magellan Telescope. In this paper, a Laser Tomography AO system on an ELT is simulated with OOMAO. In the first part, we set-up the class parameters and we link the instantiated objects to create the source optical path. Then we build the tomographic reconstructor and write the script for the pseudo-open-loop controller.

  3. Upgrade to MODFLOW-GUI; addition of MODPATH, ZONEBDGT, and additional MODFLOW packages to the U.S. Geological Survey MODFLOW-96 Graphical-User Interface

    Science.gov (United States)

    Winston, R.B.

    1999-01-01

    This report describes enhancements to a Graphical-User Interface (GUI) for MODFLOW-96, the U.S. Geological Survey (USGS) modular, three-dimensional, finitedifference ground-water flow model, and MOC3D, the USGS three-dimensional, method-ofcharacteristics solute-transport model. The GUI is a plug-in extension (PIE) for the commercial program Argus ONEe. The GUI has been modified to support MODPATH (a particle tracking post-processing package for MODFLOW), ZONEBDGT (a computer program for calculating subregional water budgets), and the Stream, Horizontal-Flow Barrier, and Flow and Head Boundary packages in MODFLOW. Context-sensitive help has been added to make the GUI easier to use and to understand. In large part, the help consists of quotations from the relevant sections of this report and its predecessors. The revised interface includes automatic creation of geospatial information layers required for the added programs and packages, and menus and dialog boxes for input of parameters for simulation control. The GUI creates formatted ASCII files that can be read by MODFLOW-96, MOC3D, MODPATH, and ZONEBDGT. All four programs can be executed within the Argus ONEe application (Argus Interware, Inc., 1997). Spatial results of MODFLOW-96, MOC3D, and MODPATH can be visualized within Argus ONEe. Results from ZONEBDGT can be visualized in an independent program that can also be used to view budget data from MODFLOW, MOC3D, and SUTRA. Another independent program extracts hydrographs of head or drawdown at individual cells from formatted MODFLOW head and drawdown files. A web-based tutorial on the use of MODFLOW with Argus ONE has also been updated. The internal structure of the GUI has been modified to make it possible for advanced users to easily customize the GUI. Two additional, independent PIE?s were developed to allow users to edit the positions of nodes and to facilitate exporting the grid geometry to external programs.

  4. Open Source Power Plant Simulator Development Under Matlab Environment

    International Nuclear Information System (INIS)

    Ratemi, W.M.; Fadilah, S.M.; Abonoor, N

    2008-01-01

    In this paper an open source programming approach is targeted for the development of power plant simulator under Matlab environment. With this approach many individuals can contribute to the development of the simulator by developing different orders of complexities of the power plant components. Such modules can be modeled based on physical principles, or using neural networks or other methods. All of these modules are categorized in Matlab library, of which the user can select and build up his simulator. Many international companies developed its own authoring tool for the development of its simulators, and hence it became its own property available for high costs. Matlab is a general software developed by mathworks that can be used with its toolkits as the authoring tool for the development of components by different individuals, and through the appropriate coordination, different plant simulators, nuclear, traditional , or even research reactors can be computerly assembled. In this paper, power plant components such as a pressurizer, a reactor, a steam generator, a turbine, a condenser, a feedwater heater, a valve, a pump are modeled based on physical principles. Also a prototype modeling of a reactor ( a scram case) based on neural networks is developed. These modules are inserted in two different Matlab libraries one called physical and the other is called neural. Furthermore, during the simulation one can pause and shuffle the modules selected from the two libraries and then proceed the simulation. Also, under the Matlab environment a PID controller is developed for multi-loop plant which can be integrated for the control of the appropriate developed simulator. This paper is an attempt to base the open source approach for the development of power plant simulators or even research reactor simulators. It then requires the coordination among interested individuals or institutions to set it to professionalism. (author)

  5. Parallelizing AT with MatlabMPI

    International Nuclear Information System (INIS)

    2011-01-01

    The Accelerator Toolbox (AT) is a high-level collection of tools and scripts specifically oriented toward solving problems dealing with computational accelerator physics. It is integrated into the MATLAB environment, which provides an accessible, intuitive interface for accelerator physicists, allowing researchers to focus the majority of their efforts on simulations and calculations, rather than programming and debugging difficulties. Efforts toward parallelization of AT have been put in place to upgrade its performance to modern standards of computing. We utilized the packages MatlabMPI and pMatlab, which were developed by MIT Lincoln Laboratory, to set up a message-passing environment that could be called within MATLAB, which set up the necessary pre-requisites for multithread processing capabilities. On local quad-core CPUs, we were able to demonstrate processor efficiencies of roughly 95% and speed increases of nearly 380%. By exploiting the efficacy of modern-day parallel computing, we were able to demonstrate incredibly efficient speed increments per processor in AT's beam-tracking functions. Extrapolating from prediction, we can expect to reduce week-long computation runtimes to less than 15 minutes. This is a huge performance improvement and has enormous implications for the future computing power of the accelerator physics group at SSRL. However, one of the downfalls of parringpass is its current lack of transparency; the pMatlab and MatlabMPI packages must first be well-understood by the user before the system can be configured to run the scripts. In addition, the instantiation of argument parameters requires internal modification of the source code. Thus, parringpass, cannot be directly run from the MATLAB command line, which detracts from its flexibility and user-friendliness. Future work in AT's parallelization will focus on development of external functions and scripts that can be called from within MATLAB and configured on multiple nodes, while

  6. MATLAB for Engineering and the Life Sciences

    CERN Document Server

    Tranquillo, Joseph

    2011-01-01

    In recent years, the life sciences have embraced simulation as an important tool in biomedical research. Engineers are also using simulation as a powerful step in the design process. In both arenas, Matlab has become the gold standard. It is easy to learn, flexible, and has a large and growing userbase. MATLAB for Engineering and the Life Sciences is a self-guided tour of the basic functionality of MATLAB along with the functions that are most commonly used in biomedical engineering and other life sciences. Although the text is written for undergraduates, graduate students and academics, those

  7. Parallax visualization of full motion video using the Pursuer GUI

    Science.gov (United States)

    Mayhew, Christopher A.; Forgues, Mark B.

    2014-06-01

    In 2013, the Authors reported to the SPIE on the Phase 1 development of a Parallax Visualization (PV) plug-in toolset for Wide Area Motion Imaging (WAMI) data using the Pursuer Graphical User Interface (GUI).1 In addition to the ability to PV WAMI data, the Phase 1 plug-in toolset also featured a limited ability to visualize Full Motion video (FMV) data. The ability to visualize both WAMI and FMV data is highly advantageous capability for an Electric Light Table (ELT) toolset. This paper reports on the Phase 2 development and addition of a full featured FMV capability to the Pursuer WAMI PV Plug-in.

  8. Image based book cover recognition and retrieval

    Science.gov (United States)

    Sukhadan, Kalyani; Vijayarajan, V.; Krishnamoorthi, A.; Bessie Amali, D. Geraldine

    2017-11-01

    In this we are developing a graphical user interface using MATLAB for the users to check the information related to books in real time. We are taking the photos of the book cover using GUI, then by using MSER algorithm it will automatically detect all the features from the input image, after this it will filter bifurcate non-text features which will be based on morphological difference between text and non-text regions. We implemented a text character alignment algorithm which will improve the accuracy of the original text detection. We will also have a look upon the built in MATLAB OCR recognition algorithm and an open source OCR which is commonly used to perform better detection results, post detection algorithm is implemented and natural language processing to perform word correction and false detection inhibition. Finally, the detection result will be linked to internet to perform online matching. More than 86% accuracy can be obtained by this algorithm.

  9. One hundred physics visualizations using Matlab

    CERN Document Server

    Green, Dan

    2014-01-01

    This book provides visualizations of many topics in general physics. The aim is to have an interactive MATLAB script wherein the user can vary parameters in a specific problem and then immediately see the outcome by way of dynamic movies of the response of the system in question. MATLAB tools are used throughout and the software scripts accompany the text in Symbolic Mathematics, Classical Mechanics, Electromagnetism, Waves and Optics, Gases and Fluid Flow, Quantum Mechanics, Special and General Relativity, and Astrophysics and Cosmology. The emphasis is on building up an intuition by running many different parametric choices chosen actively by the user and watching the subsequent behavior of the system. Physics books using MATLAB do not have the range or the intent of this text. They are rather steeped in technical detail. Symbolic math is used extensively and is integral to the aim of using MATLAB tools to accomplish the technical aspects of problem solving.

  10. An Accelerator control middle layer using Matlab

    CERN Document Server

    Portmann, G J; Terebilo, Andrei

    2005-01-01

    Matlab is a matrix manipulation language originally developed to be a convenient language for using the LINPACK and EISPACK libraries. What makes Matlab so appealing for accelerator physics is the combination of a matrix oriented programming language, an active workspace for system variables, powerful graphics capability, built-in math libraries, and platform independence. A number of software toolboxes for accelerators have been written in Matlab – the Accelerator Toolbox (AT) for machine simulations, LOCO for accelerator calibration, Matlab Channel Access Toolbox (MCA) for EPICS connections, and the Middle Layer. This paper will describe the MiddleLayer software toolbox that resides between the high-level control applications and the low-level accelerator control system. This software was a collaborative effort between ALS and Spear but was written to easily port. Five accelerators presently use this software – Spear, ALS, CLS, and the X-ray and VUV rings at Brookhaven. The Middle Layer fu...

  11. An introduction to differential equations using MATLAB

    CERN Document Server

    Butt, Rizwan

    2016-01-01

    An Introduction to Differential Equations using MATLAB exploits the symbolic, numerical, and graphical capabilitiesof MATLAB to develop a thorough understanding of differential equations algorithms. This book provides the readerwith numerous applications, m-files, and practical examples to problems. Balancing theoretical concepts withcomputational speed and accuracy, the book includes numerous short programs in MATLAB that can be used to solveproblems involving first-and higher-order differential equations, Laplace transforms, linear systems of differentialequations, numerical solutions of differential equations, computer graphics, and more. The author emphasizes thebasic ideas of analytical and numerical techniques and the uses of modern mathematical software (MATLAB) ratherthan relying only on complex mathematical derivations to engineers, mathematician, computer scientists, andphysicists or for use as a textbook in applied or computational courses.A CD-ROM with all the figures, codes, solutions, appendices...

  12. Linear algebra applications using Matlab software

    Directory of Open Access Journals (Sweden)

    Cornelia Victoria Anghel

    2005-10-01

    Full Text Available The paper presents two ways of special matrix generating using some functions included in the MatLab software package. The MatLab software package contains a set of functions that generate special matrixes used in the linear algebra applications and the signal processing from different activity fields. The paper presents two tipes of special matrixes that can be generated using written sintaxes in the dialog window of the MatLab software and for the command validity we need to press the Enter task. The applications presented in the paper represent eamples of numerical calculus using the MatLab software and belong to the scientific field „Computer Assisted Mathematics” thus creating the symbiosis between mathematics and informatics.

  13. A Matlab program for stepwise regression

    Directory of Open Access Journals (Sweden)

    Yanhong Qi

    2016-03-01

    Full Text Available The stepwise linear regression is a multi-variable regression for identifying statistically significant variables in the linear regression equation. In present study, we presented the Matlab program of stepwise regression.

  14. GUIer gør godt - Introduktion til GUIer i Matlab

    DEFF Research Database (Denmark)

    Jacobsen, Niels Gjøl

    2003-01-01

    GUI er en forkortelse for 'Graphical User Interface', og det er en særdeles nyttig måde at visualisere sine data, og det gør det ligeledes på en simpel måde muligt at ændre enkelte parametrer i beregninger og se de fysiske, matematiske eller andre ændringer, som sker i forbindelse med ændringen a...... disse parametrer. Ydermere hjælper GUIer til, at der bliver skabt en grænse for, hvor meget brugeren kan ændre i programmet, da der ikke direkte kontakt til den bagvedliggende kode. Denne introduktion er skrevet til Matlab 6.5. R13....

  15. SINEX: SCALE shielding analysis GUI for X-Windows

    International Nuclear Information System (INIS)

    Browman, S.M.; Barnett, D.L.

    1997-12-01

    SINEX (SCALE Interface Environment for X-windows) is an X-Windows graphical user interface (GUI), that is being developed for performing SCALE radiation shielding analyses. SINEX enables the user to generate input for the SAS4/MORSE and QADS/QAD-CGGP shielding analysis sequences in SCALE. The code features will facilitate the use of both analytical sequences with a minimum of additional user input. Included in SINEX is the capability to check the geometry model by generating two-dimensional (2-D) color plots of the geometry model using a new version of the SCALE module, PICTURE. The most sophisticated feature, however, is the 2-D visualization display that provides a graphical representation on screen as the user builds a geometry model. This capability to interactively build a model will significantly increase user productivity and reduce user errors. SINEX will perform extensive error checking and will allow users to execute SCALE directly from the GUI. The interface will also provide direct on-line access to the SCALE manual

  16. Power System Stabilizer Design Based on a Particle Swarm Optimization Multiobjective Function Implemented Under Graphical Interface

    Directory of Open Access Journals (Sweden)

    Ghouraf Djamel Eddine

    2016-05-01

    Full Text Available Power system stability considered a necessary condition for normal functioning of an electrical network. The role of regulation and control systems is to ensure that stability by determining the essential elements that influence it. This paper proposes a Particle Swarm Optimization (PSO based multiobjective function to tuning optimal parameters of Power System Stabilizer (PSS; this later is used as auxiliary to generator excitation system in order to damp electro mechanicals oscillations of the rotor and consequently improve Power system stability. The computer simulation results obtained by developed graphical user interface (GUI have proved the efficiency of PSS optimized by a Particle Swarm Optimization, in comparison with a conventional PSS, showing stable   system   responses   almost   insensitive   to   large parameter variations.Our present study was performed using a GUI realized under MATLAB in our work.

  17. MATLAB Software Versions and Licenses for the Peregrine System |

    Science.gov (United States)

    High-Performance Computing | NREL MATLAB Software Versions and Licenses for the Peregrine System MATLAB Software Versions and Licenses for the Peregrine System Learn about the MATLAB software Peregrine is R2017b. Licenses MATLAB is proprietary software. As such, users have access to a limited number

  18. DESIGNING APPLICATION OF ANT COLONY SYSTEM ALGORITHM FOR THE SHORTEST ROUTE OF BANDA ACEH CITY AND ACEH BESAR REGENCY TOURISM BY USING GRAPHICAL USER INTERFACE MATLAB

    Directory of Open Access Journals (Sweden)

    Durisman Durisman

    2017-09-01

    Full Text Available Banda Aceh city and Aceh Besar Regency are two of the leading tourism areas located in the province of Aceh. For travelling, there are some important things to be considered, such as determining schedule and distance of tourism. Every tourist certainly chooses the shortest route to reach the destination since it can save time, energy, and money. The purpose of this reserach is to develop a method that can be used in calculating the shortest route and applied to the tourism of Banda Aceh city and Aceh Besar regency. In this reserach, Ant Colony Optimization algorithm is used to determine the shortest route to tourism of Banda Aceh city and Aceh Besar regency. From the analysis made by using both manual calculation and  GUI MATLAB program application test, the shortest route can be obtained with a minimum distance of 120.85 km in one travel. Based on the test result, the application for tourism (in Banda Aceh city and Aceh Besar regency shortest route searching built by utilizing the Ant Colony Optimization algorithm can find optimal route.  Keyword: tourism, the shortest route, Ant Colony Optimization

  19. First experience with the MATLAB Middle Layer at ANKA

    International Nuclear Information System (INIS)

    Marsching, S.; Huttel, E.; Klein, M.; Mueller, A.S.; Smale, N.J.

    2012-01-01

    ANKA is a synchrotron radiation facility at the Karlsruhe Institute of Technology. The MATLAB Middle Layer (MML) is a collection of scripts for the MATLAB programming environment, designed to control and measure parameters of an accelerator. MML has been adapted for use at ANKA and the commissioning process was quite simple and would have been even simpler if we had used one of the control systems directly supported by MML. At ANKA MML is used for accelerator physics studies and regular tasks like beam-based alignment and response matrix analysis using LOCO. Furthermore, we intend to study the MML as default orbit correction tool for user operation. We report on the experience made during the commissioning process and present the latest results obtained while using the MML for machine studies. MML simplifies the task of performing a beam-based alignment dramatically compared to our old solution which required the user to copy the measured data into specific files for further evaluation

  20. Easy Access to HPC Resources through the Application GUI

    KAUST Repository

    van Waveren, Matthijs

    2016-11-01

    The computing environment at the King Abdullah University of Science and Technology (KAUST) is growing in size and complexity. KAUST hosts the tenth fastest supercomputer in the world (Shaheen II) and several HPC clusters. Researchers can be inhibited by the complexity, as they need to learn new languages and execute many tasks in order to access the HPC clusters and the supercomputer. In order to simplify the access, we have developed an interface between the applications and the clusters and supercomputer that automates the transfer of input data and job submission and also the retrieval of results to the researcher’s local workstation. The innovation is that the user now submits his jobs from within the application GUI on his workstation, and does not have to directly log into the clusters or supercomputer anymore. This article details the solution and its benefits to the researchers.

  1. Digital signal processing for wireless communication using Matlab

    CERN Document Server

    Gopi, E S

    2016-01-01

    This book examines signal processing techniques used in wireless communication illustrated by using the Matlab program. The author discusses these techniques as they relate to Doppler spread; delay spread; Rayleigh and Rician channel modeling; rake receiver; diversity techniques; MIMO and OFDM -based transmission techniques; and array signal processing. Related topics such as detection theory, link budget, multiple access techniques, and spread spectrum are also covered.   ·         Illustrates signal processing techniques involved in wireless communication using Matlab ·         Discusses multiple access techniques such as Frequency division multiple access, Time division multiple access, and Code division multiple access ·         Covers band pass modulation techniques such as Binary phase shift keying, Differential phase shift keying, Quadrature phase shift keying, Binary frequency shift keying, Minimum shift keying, and Gaussian minimum shift keying.

  2. A Matlab Tool for Tumor Localization in Parathyroid Sestamibi Scintigraphy

    Directory of Open Access Journals (Sweden)

    M. Đurović

    2015-11-01

    Full Text Available Submarine method for localization of parathyroid tumors (PT has proved to be effective in case of typical pitfalls of conventional scintigraphic methods (combined subtraction and double phase methods. It uses images obtained by standard dynamic parathyroid sestamibi scintigraphy suggested by European Association of Nuclear Medicine. This paper presents: 1 the developed Matlab interface that enables the implementation and evaluation of algorithms for the automatic application of Submarine method; 2 the algorithm for automatic extraction of the entire thyroid region from the background radioactivity using operations from mathematical morphology applied on dynamic scintigrams; 3 the results obtained by algorithm for localization and visualization of PTs based on estimation of exponential decreasing trend of time-activity curves. The algorithm was tested on a group of 20 patients with histopathologically proven PTs using developed Matlab interface.

  3. Scientific computing an introduction using Maple and Matlab

    CERN Document Server

    Gander, Walter; Kwok, Felix

    2014-01-01

    Scientific computing is the study of how to use computers effectively to solve problems that arise from the mathematical modeling of phenomena in science and engineering. It is based on mathematics, numerical and symbolic/algebraic computations and visualization. This book serves as an introduction to both the theory and practice of scientific computing, with each chapter presenting the basic algorithms that serve as the workhorses of many scientific codes; we explain both the theory behind these algorithms and how they must be implemented in order to work reliably in finite-precision arithmetic. The book includes many programs written in Matlab and Maple – Maple is often used to derive numerical algorithms, whereas Matlab is used to implement them. The theory is developed in such a way that students can learn by themselves as they work through the text. Each chapter contains numerous examples and problems to help readers understand the material “hands-on”.

  4. Slow Orbit Feedback at the ALS Using Matlab

    International Nuclear Information System (INIS)

    Portmann, G.

    1999-01-01

    The third generation Advanced Light Source (ALS) produces extremely bright and finely focused photon beams using undulatory, wigglers, and bend magnets. In order to position the photon beams accurately, a slow global orbit feedback system has been developed. The dominant causes of orbit motion at the ALS are temperature variation and insertion device motion. This type of motion can be removed using slow global orbit feedback with a data rate of a few Hertz. The remaining orbit motion in the ALS is only 1-3 micron rms. Slow orbit feedback does not require high computational throughput. At the ALS, the global orbit feedback algorithm, based on the singular valued decomposition method, is coded in MATLAB and runs on a control room workstation. Using the MATLAB environment to develop, test, and run the storage ring control algorithms has proven to be a fast and efficient way to operate the ALS

  5. Research Reactor Power Control System Design by MATLAB/SIMULINK

    International Nuclear Information System (INIS)

    Baang, Dane; Suh, Yong Suk; Kim, Young Ki; Im, Ki Hong

    2013-01-01

    In this study it is presented that MATLAB/SIMULINK can be efficiently used for modeling and power control system design for research reactors. The presented power control system deals with various functions including reactivity control, signals processing, reactivity calculation, alarm request generation, etc., thus it is required to test all the software logic using proper model for reactor, control rods, and field instruments. In MATLAB/SIMULINK tool, point kinetics, thermal model, control absorber rod model, and other instrument models were developed based on reactor parameters and known properties of each component or system. The software for power control system was invented and linked to the model to test each function. From the simulation result it is shown that the power control performance and other functions of the system can be easily tested and analyzed in the proposed simulation structure

  6. Design of high-performance parallelized gene predictors in MATLAB.

    Science.gov (United States)

    Rivard, Sylvain Robert; Mailloux, Jean-Gabriel; Beguenane, Rachid; Bui, Hung Tien

    2012-04-10

    This paper proposes a method of implementing parallel gene prediction algorithms in MATLAB. The proposed designs are based on either Goertzel's algorithm or on FFTs and have been implemented using varying amounts of parallelism on a central processing unit (CPU) and on a graphics processing unit (GPU). Results show that an implementation using a straightforward approach can require over 4.5 h to process 15 million base pairs (bps) whereas a properly designed one could perform the same task in less than five minutes. In the best case, a GPU implementation can yield these results in 57 s. The present work shows how parallelism can be used in MATLAB for gene prediction in very large DNA sequences to produce results that are over 270 times faster than a conventional approach. This is significant as MATLAB is typically overlooked due to its apparent slow processing time even though it offers a convenient environment for bioinformatics. From a practical standpoint, this work proposes two strategies for accelerating genome data processing which rely on different parallelization mechanisms. Using a CPU, the work shows that direct access to the MEX function increases execution speed and that the PARFOR construct should be used in order to take full advantage of the parallelizable Goertzel implementation. When the target is a GPU, the work shows that data needs to be segmented into manageable sizes within the GFOR construct before processing in order to minimize execution time.

  7. TecLines: A MATLAB-Based Toolbox for Tectonic Lineament Analysis from Satellite Images and DEMs, Part 1: Line Segment Detection and Extraction

    OpenAIRE

    Rahnama, Mehdi; Gloaguen, Richard

    2014-01-01

    Geological structures, such as faults and fractures, appear as image discontinuities or lineaments in remote sensing data. Geologic lineament mapping is a very important issue in geo-engineering, especially for construction site selection, seismic, and risk assessment, mineral exploration and hydrogeological research. Classical methods of lineaments extraction are based on semi-automated (or visual) interpretation of optical data and digital elevation models. We developed a freely available M...

  8. Practical image and video processing using MATLAB

    CERN Document Server

    Marques, Oge

    2011-01-01

    "The book provides a practical introduction to the most important topics in image and video processing using MATLAB (and its Image Processing Toolbox) as a tool to demonstrate the most important techniques and algorithms. The contents are presented in a clear, technically accurate, objective way, with just enough mathematical detail. Most of the chapters are supported by figures, examples, illustrative problems, MATLAB scripts, suggestions for further reading, bibliographical references, useful Web sites, and exercises and computer projects to extend the understanding of their contents"--

  9. Aplikasi MATLAB untuk Mengenali Karakter Tulisan Tangan

    Directory of Open Access Journals (Sweden)

    ali mahmudi

    2017-03-01

    Full Text Available Handwriting recognition is one of the very interesting research object in the field of image processing, artificial intelligence and computer vision. This is due to the handwritten characters is varied in every individual. The style, size and orientation of handwriting characters has made every body’s is different, hence handwriting recognition is a very interesting research object. Handwriting recognition application has been used in quite many applications, such as reading the bank deposits, reading the postal code in letters, and helping peolple in managing documents. This paper presents a handwriting recognition application using Matlab. Matlab toolbox that is used in this research are Image Processing and Neural Network Toolbox.

  10. [Professor DONG Gui-rong's experience for the treatment of peripheral facial paralysis].

    Science.gov (United States)

    Cao, Lian-Ying; Shen, Te-Li; Zhang, Wei; Chen, Si-Hui

    2012-05-01

    Professor DONG Gui-rong's theoretical principle and manipulation points for peripheral facial paralysis were introduced in details from the angels of syndrome differentiation, timing, acupoint prescription and needling methods. For the syndrome differentiation and timing, the professor emphasized to check the treatment timing and follow the symptoms, which should be treated by stages, besides, it was necessary to find and distinguish the reason and nature of diseases to have a combined treatment of tendons and muscles. For the acupoint prescription and needling methods, he has proposed that the acupoints selection should be compatible of distal and lacal, and made a best of Baihui (GV 20) to regulate the whole yang qi, also he has paid much attention to the needling methods and staging treatment. Under the consideration of late stage of peripheral facial paralysis, based on syndrome differentiation Back-shu points have been selected to regulate zang-fu function, should achieve much better therapeutic effect.

  11. MATLAB as an incentive for student learning of skills

    Science.gov (United States)

    Bank, C. G.; Ghent, R. R.

    2016-12-01

    Our course "Computational Geology" takes a holistic approach to student learning by using MATLAB as a focal point to increase students' computing, quantitative reasoning, data analysis, report writing, and teamwork skills. The course, taught since 2007 with recent enrollments around 35 and aimed at 2nd to 3rd-year students, is required for the Geology and Earth and Environmental Systems major programs, and can be chosen as elective in our other programs, including Geophysics. The course is divided into five projects: Pacific plate velocity from the Hawaiian hotspot track, predicting CO2 concentration in the atmosphere, volume of Earth's oceans and sea-level rise, comparing wind directions for Vancouver and Squamish, and groundwater flow. Each project is based on real data, focusses on a mathematical concept (linear interpolation, gradients, descriptive statistics, differential equations) and highlights a programming task (arrays, functions, text file input/output, curve fitting). Working in teams of three, students need to develop a conceptional model to explain the data, and write MATLAB code to visualize the data and match it to their conceptional model. The programming is guided, and students work individually on different aspects (for example: reading the data, fitting a function, unit conversion) which they need to put together to solve the problem. They then synthesize their thought process in a paper. Anecdotal evidence shows that students continue using MATLAB in other courses.

  12. Radar signal analysis and processing using Matlab

    CERN Document Server

    Mahafza, Bassem R

    2008-01-01

    Offering radar-related software for the analysis and design of radar waveform and signal processing, this book provides comprehensive coverage of radar signals and signal processing techniques and algorithms. It contains numerous graphical plots, common radar-related functions, table format outputs, and end-of-chapter problems. The complete set of MATLAB[registered] functions and routines are available for download online.

  13. How to Interface Fortran with Matlab

    OpenAIRE

    Sagastizábal , Claudia; Vige , Guillaume

    1995-01-01

    Projet PROMATH; We describe the general procedure for interfacing Fortran routines with Matlab. We explain how to write a mex-file and the associated gateway function. In particular, each different type of argument is considered in detail. We finish with an illustrative example

  14. Accelerating MATLAB with GPU computing a primer with examples

    CERN Document Server

    Suh, Jung W

    2013-01-01

    Beyond simulation and algorithm development, many developers increasingly use MATLAB even for product deployment in computationally heavy fields. This often demands that MATLAB codes run faster by leveraging the distributed parallelism of Graphics Processing Units (GPUs). While MATLAB successfully provides high-level functions as a simulation tool for rapid prototyping, the underlying details and knowledge needed for utilizing GPUs make MATLAB users hesitate to step into it. Accelerating MATLAB with GPUs offers a primer on bridging this gap. Starting with the basics, setting up MATLAB for

  15. SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

    Directory of Open Access Journals (Sweden)

    Flemington Erik

    2011-01-01

    Full Text Available Abstract Background Next Generation Sequencing (NGS technology generates tens of millions of short reads for each DNA/RNA sample. A key step in NGS data analysis is the short read alignment of the generated sequences to a reference genome. Although storing alignment information in the Sequence Alignment/Map (SAM or Binary SAM (BAM format is now standard, biomedical researchers still have difficulty accessing this information. Results We have developed a Graphical User Interface (GUI software tool named SAMMate. SAMMate allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate also automates some standard procedures in DNA-seq and RNA-seq data analysis. Using either standard or customized annotation files, SAMMate allows users to accurately calculate the short read coverage of genomic intervals. In particular, for RNA-seq data SAMMate can accurately calculate the gene expression abundance scores for customized genomic intervals using short reads originating from both exons and exon-exon junctions. Furthermore, SAMMate can quickly calculate a whole-genome signal map at base-wise resolution allowing researchers to solve an array of bioinformatics problems. Finally, SAMMate can export both a wiggle file for alignment visualization in the UCSC genome browser and an alignment statistics report. The biological impact of these features is demonstrated via several case studies that predict miRNA targets using short read alignment information files. Conclusions With just a few mouse clicks, SAMMate will provide biomedical researchers easy access to important alignment information stored in SAM/BAM files. Our software is constantly updated and will greatly facilitate the downstream analysis of NGS data. Both the source code and the GUI executable are freely available under the GNU General Public License at http://sammate.sourceforge.net.

  16. Experiences with Matlab and VRML in Functional Neuroimaging Visualizations

    DEFF Research Database (Denmark)

    Nielsen, Finn Årup; Hansen, Lars Kai

    2000-01-01

    We describe some experiences with Matlab and VRML. We are developing a toolbox for neuroinformatics and describe some of the functionalities we have implemented or will implement and how Matlab and VRML support the implementation....

  17. Introduction to fuzzy logic using Matlab

    CERN Document Server

    Sivanandam, SN; Deepa, S N

    2006-01-01

    Fuzzy Logic, at present is a hot topic, among academicians as well various programmers. This book is provided to give a broad, in-depth overview of the field of Fuzzy Logic. The basic principles of Fuzzy Logic are discussed in detail with various solved examples. The different approaches and solutions to the problems given in the book are well balanced and pertinent to the Fuzzy Logic research projects. The applications of Fuzzy Logic are also dealt to make the readers understand the concept of Fuzzy Logic. The solutions to the problems are programmed using MATLAB 6.0 and the simulated results are given. The MATLAB Fuzzy Logic toolbox is provided for easy reference.

  18. MATLAB tensor classes for fast algorithm prototyping.

    Energy Technology Data Exchange (ETDEWEB)

    Bader, Brett William; Kolda, Tamara Gibson (Sandia National Laboratories, Livermore, CA)

    2004-10-01

    Tensors (also known as mutidimensional arrays or N-way arrays) are used in a variety of applications ranging from chemometrics to psychometrics. We describe four MATLAB classes for tensor manipulations that can be used for fast algorithm prototyping. The tensor class extends the functionality of MATLAB's multidimensional arrays by supporting additional operations such as tensor multiplication. The tensor as matrix class supports the 'matricization' of a tensor, i.e., the conversion of a tensor to a matrix (and vice versa), a commonly used operation in many algorithms. Two additional classes represent tensors stored in decomposed formats: cp tensor and tucker tensor. We descibe all of these classes and then demonstrate their use by showing how to implement several tensor algorithms that have appeared in the literature.

  19. Nuclear Fuel Depletion Analysis Using Matlab Software

    Science.gov (United States)

    Faghihi, F.; Nematollahi, M. R.

    Coupled first order IVPs are frequently used in many parts of engineering and sciences. In this article, we presented a code including three computer programs which are joint with the Matlab software to solve and plot the solutions of the first order coupled stiff or non-stiff IVPs. Some engineering and scientific problems related to IVPs are given and fuel depletion (production of the 239Pu isotope) in a Pressurized Water Nuclear Reactor (PWR) are computed by the present code.

  20. Directional quantile regression in Octave (and MATLAB)

    Czech Academy of Sciences Publication Activity Database

    Boček, Pavel; Šiman, Miroslav

    2016-01-01

    Roč. 52, č. 1 (2016), s. 28-51 ISSN 0023-5954 R&D Projects: GA ČR GA14-07234S Institutional support: RVO:67985556 Keywords : quantile regression * multivariate quantile * depth contour * Matlab Subject RIV: IN - Informatics, Computer Science Impact factor: 0.379, year: 2016 http://library.utia.cas.cz/separaty/2016/SI/bocek-0458380.pdf

  1. Implementation of Digital Watermarking Using MATLAB Software

    OpenAIRE

    Karnpriya Vyas; Kirti Sethiya; Sonu Jain

    2012-01-01

    Digital watermarking holds significant promise as one of the keys to protecting proprietary digital content in the coming years. It focuses on embedding information inside a digital object such that the embedded information is in separable bound to the object. The proposed scheme has been implemented on MATLAB, as it is a high level technical computing language and interactive environment for algorithm development, data visualization, data analysis, and numerical computation. We w...

  2. Matlab as a robust control design tool

    Science.gov (United States)

    Gregory, Irene M.

    1994-01-01

    This presentation introduces Matlab as a tool used in flight control research. The example used to illustrate some of the capabilities of this software is a robust controller designed for a single stage to orbit air breathing vehicles's ascent to orbit. The global requirements of the controller are to stabilize the vehicle and follow a trajectory in the presence of atmospheric disturbances and strong dynamic coupling between airframe and propulsion.

  3. Generation of synthetic gamma spectra with MATLAB

    International Nuclear Information System (INIS)

    Palmerio, Julian J.; Coppo, Anibal D.

    2009-01-01

    Objectives: The aim of this work is the simulation of gamma spectra using the MATLAB program to generate the calibration curves in efficiency, which will be used to measure radioactive waste in drums. They are necessary for the proper characterization of these drums. A Monte Carlo simulation was basically developed with the random number generator Mersenne Twister and nuclear data obtained from NIST. This paper shows the results obtained and difficulties encountered until today. The physical correction of the simulated spectra has been the only aspect we have been working, up to this moment. Procedures: A simplified representation of the 'Laboratorio de Verificacion y Control de la Calidad' was chosen. Drums with cemented liquid waste are routinely measured in this laboratory. The commercial program MCNP was also used to get a valid reference in the field of simulation of spectra. We analyzed the spectra obtained by MATLAB in the light of classical literature photon detection and the spectrum obtained by MCNP. Conclusions: Currently the program developed seems adequate to simulate a measurement in the 'Laboratorio de Verificacion y Control de la Calidad'. The spectra obtained by MATLAB seem to physically represent what is observed in real spectra. However, it is a slow program. The current development efforts are directed to improve the speed of simulation. An alternative is to use the CUDA language for NVIDIA video cards to parallelized the simulation. An adequate simulation of the electronic measuring chain is also needed to obtain better representations of the shapes of the peaks. (author)

  4. Development of the GUI environments of MIDAS code for convenient input and output processing

    International Nuclear Information System (INIS)

    Kim, K. L.; Kim, D. H.

    2003-01-01

    MIDAS is being developed at KAERI as an integrated Severe Accident Analysis Code with easy model modification and addition by restructuring the data transfer scheme. In this paper, the input file management system, IEDIT and graphic simulation system, SATS, are presented as MIDAS input and output GUI systems. These two systems would form the basis of the MIDAS GUI system for input and output processing, and they are expected to be useful tools for severe accidents analysis and simulation

  5. Efficient topology optimization in MATLAB using 88 lines of code

    DEFF Research Database (Denmark)

    Andreassen, Erik; Clausen, Anders; Schevenels, Mattias

    2011-01-01

    The paper presents an efficient 88 line MATLAB code for topology optimization. It has been developed using the 99 line code presented by Sigmund (Struct Multidisc Optim 21(2):120–127, 2001) as a starting point. The original code has been extended by a density filter, and a considerable improvemen...... of the basic code to include recent PDE-based and black-and-white projection filtering methods. The complete 88 line code is included as an appendix and can be downloaded from the web site www.topopt.dtu.dk....

  6. Nuclear Power Reactor simulator - based training program

    International Nuclear Information System (INIS)

    Abdelwahab, S.A.S.

    2009-01-01

    nuclear power stations will continue playing a major role as an energy source for electric generation and heat production in the world. in this paper, a nuclear power reactor simulator- based training program will be presented . this program is designed to aid in training of the reactor operators about the principles of operation of the plant. also it could help the researchers and the designers to analyze and to estimate the performance of the nuclear reactors and facilitate further studies for selection of the proper controller and its optimization process as it is difficult and time consuming to do all experiments in the real nuclear environment.this program is written in MATLAB code as MATLAB software provides sophisticated tools comparable to those in other software such as visual basic for the creation of graphical user interface (GUI). moreover MATLAB is available for all major operating systems. the used SIMULINK reactor model for the nuclear reactor can be used to model different types by adopting appropriate parameters. the model of each component of the reactor is based on physical laws rather than the use of look up tables or curve fitting.this simulation based training program will improve acquisition and retention knowledge also trainee will learn faster and will have better attitude

  7. Advanced Dynamics Analytical and Numerical Calculations with MATLAB

    CERN Document Server

    Marghitu, Dan B

    2012-01-01

    Advanced Dynamics: Analytical and Numerical Calculations with MATLAB provides a thorough, rigorous presentation of kinematics and dynamics while using MATLAB as an integrated tool to solve problems. Topics presented are explained thoroughly and directly, allowing fundamental principles to emerge through applications from areas such as multibody systems, robotics, spacecraft and design of complex mechanical devices. This book differs from others in that it uses symbolic MATLAB for both theory and applications. Special attention is given to solutions that are solved analytically and numerically using MATLAB. The illustrations and figures generated with MATLAB reinforce visual learning while an abundance of examples offer additional support. This book also: Provides solutions analytically and numerically using MATLAB Illustrations and graphs generated with MATLAB reinforce visual learning for students as they study Covers modern technical advancements in areas like multibody systems, robotics, spacecraft and des...

  8. System Simulation of Nuclear Power Plant by Coupling RELAP5 and Matlab/Simulink

    International Nuclear Information System (INIS)

    Meng Lin; Dong Hou; Zhihong Xu; Yanhua Yang; Ronghua Zhang

    2006-01-01

    Since RELAP5 code has general and advanced features in thermal-hydraulic computation, it has been widely used in transient and accident safety analysis, experiment planning analysis, and system simulation, etc. So we wish to design, analyze, verify a new Instrumentation And Control (I and C) system of Nuclear Power Plant (NPP) based on the best-estimated code, and even develop our engineering simulator. But because of limited function of simulating control and protection system in RELAP5, it is necessary to expand the function for high efficient, accurate, flexible design and simulation of I and C system. Matlab/Simulink, a scientific computation software, just can compensate the limitation, which is a powerful tool in research and simulation of plant process control. The software is selected as I and C part to be coupled with RELAP5 code to realize system simulation of NPPs. There are two key techniques to be solved. One is the dynamic data exchange, by which Matlab/Simulink receives plant parameters and returns control results. Database is used to communicate the two codes. Accordingly, Dynamic Link Library (DLL) is applied to link database in RELAP5, while DLL and S-Function is applied in Matlab/Simulink. The other problem is synchronization between the two codes for ensuring consistency in global simulation time. Because Matlab/Simulink always computes faster than RELAP5, the simulation time is sent by RELAP5 and received by Matlab/Simulink. A time control subroutine is added into the simulation procedure of Matlab/Simulink to control its simulation advancement. Through these ways, Matlab/Simulink is dynamically coupled with RELAP5. Thus, in Matlab/Simulink, we can freely design control and protection logic of NPPs and test it with best-estimated plant model feedback. A test will be shown to illuminate that results of coupling calculation are nearly the same with one of single RELAP5 with control logic. In practice, a real Pressurized Water Reactor (PWR) is

  9. Signals and systems primer with Matlab

    CERN Document Server

    Poularikas, Alexander D

    2006-01-01

    Signals and Systems Primer with MATLAB® equally emphasizes the fundamentals of both analog and digital signals and systems. To ensure insight into the basic concepts and methods, the text presents a variety of examples that illustrate a wide range of applications, from microelectromechanical to worldwide communication systems. It also provides MATLAB functions and procedures for practice and verification of these concepts.Taking a pedagogical approach, the author builds a solid foundation in signal processing as well as analog and digital systems. The book first introduces orthogonal signals,

  10. The Matlab Radial Basis Function Toolbox

    Directory of Open Access Journals (Sweden)

    Scott A. Sarra

    2017-03-01

    Full Text Available Radial Basis Function (RBF methods are important tools for scattered data interpolation and for the solution of Partial Differential Equations in complexly shaped domains. The most straight forward approach used to evaluate the methods involves solving a linear system which is typically poorly conditioned. The Matlab Radial Basis Function toolbox features a regularization method for the ill-conditioned system, extended precision floating point arithmetic, and symmetry exploitation for the purpose of reducing flop counts of the associated numerical linear algebra algorithms.

  11. Computational partial differential equations using Matlab

    CERN Document Server

    Li, Jichun

    2008-01-01

    Brief Overview of Partial Differential Equations The parabolic equations The wave equations The elliptic equations Differential equations in broader areasA quick review of numerical methods for PDEsFinite Difference Methods for Parabolic Equations Introduction Theoretical issues: stability, consistence, and convergence 1-D parabolic equations2-D and 3-D parabolic equationsNumerical examples with MATLAB codesFinite Difference Methods for Hyperbolic Equations IntroductionSome basic difference schemes Dissipation and dispersion errors Extensions to conservation lawsThe second-order hyperbolic PDE

  12. Effect of Rat Medicated Serum Containing Zuo Gui Wan and/or You Gui Wan on the Differentiation of Stem Cells Derived from Human First Trimester Umbilical Cord into Oocyte-Like Cells In Vitro

    Directory of Open Access Journals (Sweden)

    Xiang Hu

    2015-01-01

    Full Text Available Zuo Gui Wan (ZGW and You Gui Wan (YGW are two classic formulas used in clinical treatment of infertility in traditional Chinese medicine (TCM. However, the actions of the formulas remain to be proven at the cellular and molecular levels. In this study, we investigate whether the two formulas have any effect on germ cell formation and differentiation by culturing rat medicated serums containing YGW or ZGW with stem cells derived from human first trimester umbilical cord. Our results showed that while the normal rat serums had no significant effects, the rat medicated serums had significant effects on the differentiation of the stem cells into oocyte-like cells (OLCs based on (1 cell morphological changes that resembled purative cumulus-oocyte complexes (COCs; (2 expressions of specific markers that were indicative of germ cell formation and oocyte development; and (3 estradiol production by the COC-like cells. Furthermore, ZGW medicated serums exhibited more obvious effects on specific gene expressions of germ cells, whereas YGW medicated serums showed stronger effects on estradiol production. Accordingly, our study provides evidence demonstrating for the first time that one of molecular and cellular actions of YGW or ZGW in treating human reproductive dysfunctions may be through an enhancement of neooogenesis.

  13. GUI2QAD, Graphical Interface for QAD-CGPIC, Point Kernel for Shielding Calculations

    International Nuclear Information System (INIS)

    2001-01-01

    1 - Description of program or function: GUI2QAD is an aid in preparation of input for the included QAD-CGPIC program, which is based on CCC-493/QAD-CGGP and PICTURE. QAD-CGPIC, which is included in this distribution, is a Fortran code for neutron and gamma-ray shielding calculations by the point kernel method. Provision is available to interactively view the geometry of the system. QAD-CG calculates fast-neutron and gamma-ray penetration through various shield configurations defined by combinatorial geometry specifications. The code can use the ANS-6.4.3 1990 buildup factor compilation (26 materials). 2 - Methods:The code QAD-CGPIC is based on point kernel method and has a provision to select either GP or Capo's build up factors. 3 - Restrictions on the complexity of the problem: Details on restrictions and limitations are available in the RSICC code manual CCC-493/QAD-CGGP. Because CCC-493 was obsoleted by CCC-645/QAD-CGGP-A, the CCC-493 documentation is not online but is included with this package. This package includes a Graphical User Interface to facilitate use

  14. A cross-platform GUI to control instruments compliant with SCPI through VISA

    Science.gov (United States)

    Roach, Eric; Liu, Jing

    2015-10-01

    In nuclear physics experiments, it is necessary and important to control instruments from a PC, which automates many tasks that require human operations otherwise. Not only does this make long term measurements possible, but it also makes repetitive operations less error-prone. We created a graphical user interface (GUI) to control instruments connected to a PC through RS232, USB, LAN, etc. The GUI is developed using Qt Creator, a cross-platform integrated development environment, which makes it portable to various operating systems, including those commonly used in mobile devices. NI-VISA library is used in the back end so that the GUI can be used to control instruments connected through various I/O interfaces without any modification. Commonly used SCPI commands can be sent to different instruments using buttons, sliders, knobs, and other various widgets provided by Qt Creator. As an example, we demonstrate how we set and fetch parameters and how to retrieve and display data from an Agilent Digital Storage Oscilloscope X3034A with the GUI. Our GUI can be easily used for other instruments compliant with SCPI and VISA with little or no modification.

  15. A guide to MATLAB for beginners and experienced users

    CERN Document Server

    Hunt, Brian R; Rosenberg, Jonathan M

    2014-01-01

    Now in its third edition, this outstanding textbook explains everything you need to get started using MATLAB®. It contains concise explanations of essential MATLAB commands, as well as easily understood instructions for using MATLAB's programming features, graphical capabilities, simulation models, and rich desktop interface. MATLAB 8 and its new user interface is treated extensively in the book. New features in this edition include: a complete treatment of MATLAB's publish feature; new material on MATLAB graphics, enabling the user to master quickly the various symbolic and numerical plotting routines; and a robust presentation of MuPAD® and how to use it as a stand-alone platform. The authors have also updated the text throughout, reworking examples and exploring new applications. The book is essential reading for beginners, occasional users and experienced users wishing to brush up their skills. Further resources are available from the authors' website at www-math.umd.edu/schol/a-guide-to-matlab.html.

  16. Segmentation and analysis of mouse pituitary cells with graphic user interface (GUI)

    Science.gov (United States)

    González, Erika; Medina, Lucía.; Hautefeuille, Mathieu; Fiordelisio, Tatiana

    2018-02-01

    In this work we present a method to perform pituitary cell segmentation in image stacks acquired by fluorescence microscopy from pituitary slice preparations. Although there exist many procedures developed to achieve cell segmentation tasks, they are generally based on the edge detection and require high resolution images. However in the biological preparations that we worked on, the cells are not well defined as experts identify their intracellular calcium activity due to fluorescence intensity changes in different regions over time. This intensity changes were associated with time series over regions, and because they present a particular behavior they were used into a classification procedure in order to perform cell segmentation. Two logistic regression classifiers were implemented for the time series classification task using as features the area under the curve and skewness in the first classifier and skewness and kurtosis in the second classifier. Once we have found both decision boundaries in two different feature spaces by training using 120 time series, the decision boundaries were tested over 12 image stacks through a python graphical user interface (GUI), generating binary images where white pixels correspond to cells and the black ones to background. Results show that area-skewness classifier reduces the time an expert dedicates in locating cells by up to 75% in some stacks versus a 92% for the kurtosis-skewness classifier, this evaluated on the number of regions the method found. Due to the promising results, we expect that this method will be improved adding more relevant features to the classifier.

  17. JISCARD GUI, a graphical interface application for simple and quick calculation of aviation route doses

    International Nuclear Information System (INIS)

    Andersson, Martin; Ryufuku, Susumu; Yasuda, Hiroshi

    2011-01-01

    Pilots, flight attendants, and passengers aboard jet aircrafts are subjected to higher cosmic radiation levels at high altitude than on the ground. Additional dose, received during flight is called 'aviation route dose'. Addressing the needs for precise and easy determination of aviation route doses (Sv), the authors have developed a new application 'JISCARD GUI' with a graphical user interface which provides dose rate (Sv/h) distribution along a flight route and aviation route dose. The graphical interface made with Adobe Flash provide functions to select airports on dynamic map or to search by airport/city names, and to report resulting aviation route doses and graphs of dose rate change through a flight. Dose rate data at several cut off rigidity, Rc and force field potential, FFP were calculated in advance using a PHITS-based analytical model and stored in the server as matrix data. Upon user's request of departure/arrival airports and flight date, interpolation using matrix data substantiates derivation of dose rate distribution in a simple and quick manner with sufficient accuracy. Precision of the dose calculation was verified by comparison with JISCARD EX (MS-Excel version) released in September 2008. This advanced application will be open to public through the website of the National Institute of Radiological Sciences in the near future. (author)

  18. Digital image processing an algorithmic approach with Matlab

    CERN Document Server

    Qidwai, Uvais

    2009-01-01

    Introduction to Image Processing and the MATLAB EnvironmentIntroduction Digital Image Definitions: Theoretical Account Image Properties MATLAB Algorithmic Account MATLAB CodeImage Acquisition, Types, and File I/OImage Acquisition Image Types and File I/O Basics of Color Images Other Color Spaces Algorithmic Account MATLAB CodeImage ArithmeticIntroduction Operator Basics Theoretical TreatmentAlgorithmic Treatment Coding ExamplesAffine and Logical Operations, Distortions, and Noise in ImagesIntroduction Affine Operations Logical Operators Noise in Images Distortions in ImagesAlgorithmic Account

  19. Parallel Sequential Monte Carlo for Efficient Density Combination: The Deco Matlab Toolbox

    DEFF Research Database (Denmark)

    Casarin, Roberto; Grassi, Stefano; Ravazzolo, Francesco

    This paper presents the Matlab package DeCo (Density Combination) which is based on the paper by Billio et al. (2013) where a constructive Bayesian approach is presented for combining predictive densities originating from different models or other sources of information. The combination weights...... for standard CPU computing and for Graphical Process Unit (GPU) parallel computing. For the GPU implementation we use the Matlab parallel computing toolbox and show how to use General Purposes GPU computing almost effortless. This GPU implementation comes with a speed up of the execution time up to seventy...... times compared to a standard CPU Matlab implementation on a multicore CPU. We show the use of the package and the computational gain of the GPU version, through some simulation experiments and empirical applications....

  20. MATLAB algorithm to implement soil water data assimilation with the Ensemble Kalman Filter using HYDRUS.

    Science.gov (United States)

    Valdes-Abellan, Javier; Pachepsky, Yakov; Martinez, Gonzalo

    2018-01-01

    Data assimilation is becoming a promising technique in hydrologic modelling to update not only model states but also to infer model parameters, specifically to infer soil hydraulic properties in Richard-equation-based soil water models. The Ensemble Kalman Filter method is one of the most widely employed method among the different data assimilation alternatives. In this study the complete Matlab© code used to study soil data assimilation efficiency under different soil and climatic conditions is shown. The code shows the method how data assimilation through EnKF was implemented. Richards equation was solved by the used of Hydrus-1D software which was run from Matlab. •MATLAB routines are released to be used/modified without restrictions for other researchers•Data assimilation Ensemble Kalman Filter method code.•Soil water Richard equation flow solved by Hydrus-1D.

  1. Coded Modulation in C and MATLAB

    Science.gov (United States)

    Hamkins, Jon; Andrews, Kenneth S.

    2011-01-01

    This software, written separately in C and MATLAB as stand-alone packages with equivalent functionality, implements encoders and decoders for a set of nine error-correcting codes and modulators and demodulators for five modulation types. The software can be used as a single program to simulate the performance of such coded modulation. The error-correcting codes implemented are the nine accumulate repeat-4 jagged accumulate (AR4JA) low-density parity-check (LDPC) codes, which have been approved for international standardization by the Consultative Committee for Space Data Systems, and which are scheduled to fly on a series of NASA missions in the Constellation Program. The software implements the encoder and decoder functions, and contains compressed versions of generator and parity-check matrices used in these operations.

  2. A GUI visualization system for airborne lidar image data to reconstruct 3D city model

    Science.gov (United States)

    Kawata, Yoshiyuki; Koizumi, Kohei

    2015-10-01

    A visualization toolbox system with graphical user interfaces (GUIs) was developed for the analysis of LiDAR point cloud data, as a compound object oriented widget application in IDL (Interractive Data Language). The main features in our system include file input and output abilities, data conversion capability from ascii formatted LiDAR point cloud data to LiDAR image data whose pixel value corresponds the altitude measured by LiDAR, visualization of 2D/3D images in various processing steps and automatic reconstruction ability of 3D city model. The performance and advantages of our graphical user interface (GUI) visualization system for LiDAR data are demonstrated.

  3. Testing iOS apps with HadoopUnit rapid distributed GUI testing

    CERN Document Server

    Tilley, Scott

    2014-01-01

    Smartphone users have come to expect high-quality apps. This has increased the importance of software testing in mobile software development. Unfortunately, testing apps-particularly the GUI-can be very time-consuming. Exercising every user interface element and verifying transitions between different views of the app under test quickly becomes problematic. For example, execution of iOS GUI test suites using Apple's UI Automation framework can take an hour or more if the app's interface is complicated. The longer it takes to run a test, the less frequently the test can be run, which in turn re

  4. Introduction to Numerical Computation - analysis and Matlab illustrations

    DEFF Research Database (Denmark)

    Elden, Lars; Wittmeyer-Koch, Linde; Nielsen, Hans Bruun

    In a modern programming environment like eg MATLAB it is possible by simple commands to perform advanced calculations on a personal computer. In order to use such a powerful tool efiiciently it is necessary to have an overview of available numerical methods and algorithms and to know about...... are illustrated by examples in MATLAB....

  5. Some selected quantitative methods of thermal image analysis in Matlab.

    Science.gov (United States)

    Koprowski, Robert

    2016-05-01

    The paper presents a new algorithm based on some selected automatic quantitative methods for analysing thermal images. It shows the practical implementation of these image analysis methods in Matlab. It enables to perform fully automated and reproducible measurements of selected parameters in thermal images. The paper also shows two examples of the use of the proposed image analysis methods for the area of ​​the skin of a human foot and face. The full source code of the developed application is also provided as an attachment. The main window of the program during dynamic analysis of the foot thermal image. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Detecting variability in MATLAB/Simulink models : an industry-inspired technique and its evaluation

    NARCIS (Netherlands)

    Schlie, A.; Wille, D.; Schulze, S.; Cleophas, L.G.W.A.; Schaefer, I.

    2017-01-01

    Model-based languages such as MATLAB/Simulink play an essential role in the model-driven development of software systems. To comply with new requirements, it is common practice to create new variants by copying existing systems and modifying them. Commonly referred to as clone-and-own, severe

  7. Enhancing Student Writing and Computer Programming with LATEX and MATLAB in Multivariable Calculus

    Science.gov (United States)

    Sullivan, Eric; Melvin, Timothy

    2016-01-01

    Written communication and computer programming are foundational components of an undergraduate degree in the mathematical sciences. All lower-division mathematics courses at our institution are paired with computer-based writing, coding, and problem-solving activities. In multivariable calculus we utilize MATLAB and LATEX to have students explore…

  8. FIT3D toolbox: multiple view geometry and 3D reconstruction for Matlab

    NARCIS (Netherlands)

    Esteban, I.; Dijk, J.; Groen, F.

    2010-01-01

    FIT3D is a Toolbox built for Matlab that aims at unifying and distributing a set of tools that will allow the researcher to obtain a complete 3D model from a set of calibrated images. In this paper we motivate and present the structure of the toolbox in a tutorial and example based approach. Given

  9. SIPPI: A Matlab toolbox for sampling the solution to inverse problems with complex prior information

    DEFF Research Database (Denmark)

    Hansen, Thomas Mejer; Cordua, Knud Skou; Looms, Majken Caroline

    2013-01-01

    We present an application of the SIPPI Matlab toolbox, to obtain a sample from the a posteriori probability density function for the classical tomographic inversion problem. We consider a number of different forward models, linear and non-linear, such as ray based forward models that rely...

  10. K pramenům Husových Punkt: Jan Hus a Bernard Gui

    Czech Academy of Sciences Publication Activity Database

    Soukup, Pavel

    2015-01-01

    Roč. 62, č. 1 (2015), s. 235-247 ISSN 1803-7429 R&D Projects: GA ČR(CZ) GBP405/12/G148 Institutional support: RVO:67985955 Keywords : Medieval sermons * Hussitism * preaching aids * John Hus * Bernard Gui Subject RIV: AB - History http://hdl.handle.net/11222.digilib/134673

  11. CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field

    NARCIS (Netherlands)

    Qi, Yifei; Ingolfsson, Helgi I.; Cheng, Xi; Lee, Jumin; Marrink, Siewert J.; Im, Wonpil

    Coarse-grained simulations are widely used to study large biological systems. Nonetheless, building such simulation systems becomes nontrivial, especially when membranes with various lipid types are involved. Taking advantage of the frameworks in all-atom CHARMM-GUI modules, we have developed

  12. A Graphical User Interface (GUI) for Automated Classification of Bradley Fighting Vehicle Shock Absorbers

    National Research Council Canada - National Science Library

    Sincebaugh, Patrick

    1998-01-01

    .... We then explain the design and capabilities of the SSATS graphical user interface (GUI), which includes the integration of a neural network classification scheme. We finish by discussing recent results of utilizing the system to test and evaluate Bradley armored vehicle shock absorbers.

  13. Image enhancement using MCNP5 code and MATLAB in neutron radiography

    International Nuclear Information System (INIS)

    Tharwat, Montaser; Mohamed, Nader; Mongy, T.

    2014-01-01

    This work presents a method that can be used to enhance the neutron radiography (NR) image for objects with high scattering materials like hydrogen, carbon and other light materials. This method used Monte Carlo code, MCNP5, to simulate the NR process and get the flux distribution for each pixel of the image and determines the scattered neutron distribution that caused image blur, and then uses MATLAB to subtract this scattered neutron distribution from the initial image to improve its quality. This work was performed before the commissioning of digital NR system in Jan. 2013. The MATLAB enhancement method is quite a good technique in the case of static based film neutron radiography, while in neutron imaging (NI) technique, image enhancement and quantitative measurement were efficient by using ImageJ software. The enhanced image quality and quantitative measurements were presented in this work. - Highlights: • This work is applicable for static based film neutron radiography and digital neutron imaging. • MATLAB is a useful tool for imaging enhancement in radiographic film. • Advanced imaging processing is available in the ETRR-2 for imaging processing and data extraction. • The digital imaging system is suitable for complex shapes and sizes, while MATLAB technique is suitable for simple shapes and sizes. • Quantitative measurements are available

  14. Improvements in the stopping power library libdEdx and release of the web GUI dedx.au.dk

    International Nuclear Information System (INIS)

    Toftegaard, J; Lühr, A; Bassler, N; Sobolevsky, N

    2014-01-01

    Purpose: In ion beam therapy electronic stopping power data enter in different disciplines, e.g., dose planning, dosimetry, and radiobiology. However, relevant stopping power data are only known within an accuracy of 2%-10%. We started the software library project libdEdx to unify data from several well-known stopping power sources into one ready-to-use package being 1) freely available and 2) easy accessible via a web-based front end. Methods: Currently, stopping power data from PSTAR, ASTAR, MSTAR and ICRU49+73 are implemented along with a version of the Bethe formula. The library is programmed in the language C to provide broad portability and high performance. A clean API provides full access to the underlying functions and thread safety in multi-threaded applications. The possibility to define arbitrary materials complements the list of predefined ICRU materials. Furthermore, we introduced a collection of tools, e.g., inverse stopping power look-up as well as CSDA range calculation and its inverse. Results: On a standard desktop PC libdEdx calculates 22 million look-ups/sec. A web GUI (available at http://dedx.au.dk) provides easy access to libdEdx and download of stopping data and graphs. For compounds, we observe that stopping power data are robust for variations in the mean excitation potential of the constituents as long as the total mean excitation potential is fixated. Conclusion: We released libdEdx (version number 1.2.1: http://sf.net/projects/libdedx/) with a web-based GUI. Future development will focus on implementing further stopping powers sources (e.g., for electrons and nuclear stopping) and relativistic effects.

  15. A graphical user interface (GUI) toolkit for the calculation of three-dimensional (3D) multi-phase biological effective dose (BED) distributions including statistical analyses.

    Science.gov (United States)

    Kauweloa, Kevin I; Gutierrez, Alonso N; Stathakis, Sotirios; Papanikolaou, Niko; Mavroidis, Panayiotis

    2016-07-01

    A toolkit has been developed for calculating the 3-dimensional biological effective dose (BED) distributions in multi-phase, external beam radiotherapy treatments such as those applied in liver stereotactic body radiation therapy (SBRT) and in multi-prescription treatments. This toolkit also provides a wide range of statistical results related to dose and BED distributions. MATLAB 2010a, version 7.10 was used to create this GUI toolkit. The input data consist of the dose distribution matrices, organ contour coordinates, and treatment planning parameters from the treatment planning system (TPS). The toolkit has the capability of calculating the multi-phase BED distributions using different formulas (denoted as true and approximate). Following the calculations of the BED distributions, the dose and BED distributions can be viewed in different projections (e.g. coronal, sagittal and transverse). The different elements of this toolkit are presented and the important steps for the execution of its calculations are illustrated. The toolkit is applied on brain, head & neck and prostate cancer patients, who received primary and boost phases in order to demonstrate its capability in calculating BED distributions, as well as measuring the inaccuracy and imprecision of the approximate BED distributions. Finally, the clinical situations in which the use of the present toolkit would have a significant clinical impact are indicated. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  16. An Introduction to Transient Engine Applications Using the Numerical Propulsion System Simulation (NPSS) and MATLAB

    Science.gov (United States)

    Chin, Jeffrey C.; Csank, Jeffrey T.; Haller, William J.; Seidel, Jonathan A.

    2016-01-01

    This document outlines methodologies designed to improve the interface between the Numerical Propulsion System Simulation framework and various control and dynamic analyses developed in the Matlab and Simulink environment. Although NPSS is most commonly used for steady-state modeling, this paper is intended to supplement the relatively sparse documentation on it's transient analysis functionality. Matlab has become an extremely popular engineering environment, and better methodologies are necessary to develop tools that leverage the benefits of these disparate frameworks. Transient analysis is not a new feature of the Numerical Propulsion System Simulation (NPSS), but transient considerations are becoming more pertinent as multidisciplinary trade-offs begin to play a larger role in advanced engine designs. This paper serves to supplement the relatively sparse documentation on transient modeling and cover the budding convergence between NPSS and Matlab based modeling toolsets. The following sections explore various design patterns to rapidly develop transient models. Each approach starts with a base model built with NPSS, and assumes the reader already has a basic understanding of how to construct a steady-state model. The second half of the paper focuses on further enhancements required to subsequently interface NPSS with Matlab codes. The first method being the simplest and most straightforward but performance constrained, and the last being the most abstract. These methods aren't mutually exclusive and the specific implementation details could vary greatly based on the designer's discretion. Basic recommendations are provided to organize model logic in a format most easily amenable to integration with existing Matlab control toolsets.

  17. Introduction to finite element analysis using MATLAB and Abaqus

    CERN Document Server

    Khennane, Amar

    2013-01-01

    There are some books that target the theory of the finite element, while others focus on the programming side of things. Introduction to Finite Element Analysis Using MATLAB(R) and Abaqus accomplishes both. This book teaches the first principles of the finite element method. It presents the theory of the finite element method while maintaining a balance between its mathematical formulation, programming implementation, and application using commercial software. The computer implementation is carried out using MATLAB, while the practical applications are carried out in both MATLAB and Abaqus. MA

  18. A Graphical User Interface to Generalized Linear Models in MATLAB

    Directory of Open Access Journals (Sweden)

    Peter Dunn

    1999-07-01

    Full Text Available Generalized linear models unite a wide variety of statistical models in a common theoretical framework. This paper discusses GLMLAB-software that enables such models to be fitted in the popular mathematical package MATLAB. It provides a graphical user interface to the powerful MATLAB computational engine to produce a program that is easy to use but with many features, including offsets, prior weights and user-defined distributions and link functions. MATLAB's graphical capacities are also utilized in providing a number of simple residual diagnostic plots.

  19. Paleomagnetic dating: Methods, MATLAB software, example

    Science.gov (United States)

    Hnatyshin, Danny; Kravchinsky, Vadim A.

    2014-09-01

    A MATLAB software tool has been developed to provide an easy to use graphical interface for the plotting and interpretation of paleomagnetic data. The tool takes either paleomagnetic directions or paleopoles and compares them to a user defined apparent polar wander path or secular variation curve to determine the age of a paleomagnetic sample. Ages can be determined in two ways, either by translating the data onto the reference curve, or by rotating it about a set location (e.g. sampling location). The results are then compiled in data tables which can be exported as an excel file. This data can also be plotted using variety of built-in stereographic projections, which can then be exported as an image file. This software was used to date the giant Sukhoi Log gold deposit in Russia. Sukhoi Log has undergone a complicated history of faulting, folding, metamorphism, and is the vicinity of many granitic bodies. Paleomagnetic analysis of Sukhoi Log allowed for the timing of large scale thermal or chemical events to be determined. Paleomagnetic analysis from gold mineralized black shales was used to define the natural remanent magnetization recorded at Sukhoi Log. The obtained paleomagnetic direction from thermal demagnetization produced a paleopole at 61.3°N, 155.9°E, with the semi-major axis and semi-minor axis of the 95% confidence ellipse being 16.6° and 15.9° respectively. This paleopole is compared to the Siberian apparent polar wander path (APWP) by translating the paleopole to the nearest location on the APWP. This produced an age of 255.2- 31.0+ 32.0Ma and is the youngest well defined age known for Sukhoi Log. We propose that this is the last major stage of activity at Sukhoi Log, and likely had a role in determining the present day state of mineralization seen at the deposit.

  20. System design through Matlab, control toolbox and Simulink

    CERN Document Server

    Singh, Krishna K

    2001-01-01

    MATLAB , a software package developed by Math Works, Inc. is powerful, versatile and interactive software for scientific and technical computations including simulations. Specialised toolboxes provided with several built-in functions are a special feature of MATLAB . This book titled System Design through MATLAB , Control Toolbox and SIMULINK aims at getting the reader started with computations and simulations in system engineering quickly and easily and then proceeds to build concepts for advanced computations and simulations that includes the control and compensation of systems. Simulation through SIMULINK has also been described to allow the reader to get the feel of the real world situation. This book is appropriate for undergraduate students undergoing final semester of their project work, postgraduate students who have MATLAB integrated in their course or wish to take up simulation problem in the area of system engineering for their dissertation work and research scholars for whom MATLABÊ

  1. Speeding up the MATLAB complex networks package using graphic processors

    International Nuclear Information System (INIS)

    Zhang Bai-Da; Wu Jun-Jie; Li Xin; Tang Yu-Hua

    2011-01-01

    The availability of computers and communication networks allows us to gather and analyse data on a far larger scale than previously. At present, it is believed that statistics is a suitable method to analyse networks with millions, or more, of vertices. The MATLAB language, with its mass of statistical functions, is a good choice to rapidly realize an algorithm prototype of complex networks. The performance of the MATLAB codes can be further improved by using graphic processor units (GPU). This paper presents the strategies and performance of the GPU implementation of a complex networks package, and the Jacket toolbox of MATLAB is used. Compared with some commercially available CPU implementations, GPU can achieve a speedup of, on average, 11.3×. The experimental result proves that the GPU platform combined with the MATLAB language is a good combination for complex network research. (interdisciplinary physics and related areas of science and technology)

  2. Introducing Effects in an Image: A MATLAB Approach

    OpenAIRE

    Kumar , Vinay; Sood , Saurabh; Mishra , Shruti

    2008-01-01

    A detailed study of introducing morning, night, and some more effect in an image is discussed, the original image is clicked in the morning. Several examples have also been discussed. MATLAB is used for the processing.

  3. Development and Validation of Reentry Simulation Using MATLAB

    National Research Council Canada - National Science Library

    Jameson, Jr, Robert E

    2006-01-01

    This research effort develops a program using MATLAB to solve the equations of motion for atmospheric reentry and analyzes the validity of the program for use as a tool to expeditiously predict reentry profiles...

  4. Design and fabrication of diffractive optical elements with MATLAB

    National Research Council Canada - National Science Library

    Bhattacharya, Shanti (Professor in Optics); Vijayakumar, Anand

    2017-01-01

    ... their diffraction patterns using MATLAB. The fundamentals of fabrication techniques such as photolithography, electron beam lithography, and focused ion beam lithography with basic instructions for the beginner are presented...

  5. Study of a photovoltaic system with MPPT using Matlab

    Directory of Open Access Journals (Sweden)

    Dumitru Pop

    2012-12-01

    Full Text Available In this paper a photovoltaic (PV system is analyzed using Matlab. First, a Matlab code is written in order to obtain the I-V and P-V curves at different values of solar irradiation and cell temperature. The results were compared with the experimental data of a commercial PV module, USP 150. Then, the code was implemented in Simulink and, along with a MPPT algorithm and a DC-DC converter, the whole system was simulated.

  6. Training course "Porting code from Matlab to Python"

    OpenAIRE

    Diaz, Sandra; Klijn, Wouter; Deepu, Rajalekshmi; Peyser, Alexander; Oden, Lena

    2017-01-01

    Python is becoming a popular language for scientific applications and is increasingly used for high performance computing. In this course we want to introduce Matlab programmers to the usage of Python. Matlab and Python have a comparable language philosophy, but Python can offer better performance using its optimizations and parallelization interfaces. Python also increases the portability and flexibility (interaction with other open source and proprietary software packages) of solutions, and...

  7. Subband/Transform MATLAB Functions For Processing Images

    Science.gov (United States)

    Glover, D.

    1995-01-01

    SUBTRANS software is package of routines implementing image-data-processing functions for use with MATLAB*(TM) software. Provides capability to transform image data with block transforms and to produce spatial-frequency subbands of transformed data. Functions cascaded to provide further decomposition into more subbands. Also used in image-data-compression systems. For example, transforms used to prepare data for lossy compression. Written for use in MATLAB mathematical-analysis environment.

  8. INTEGRACIÓN DE COMPONENTES COM DE MATLAB/SIMULINK EN EL ENTORNO CASE XBDK, PARA EL MODELADO DE SISTEMAS DE CONFORMACIÓN DE HAZ MATLAB/SIMULINK COM COMPONENT INTEGRATION FOR XBDK CASE ENVIRONMENT, ORIENTED TO BEAMFORMING APLICATIONS

    Directory of Open Access Journals (Sweden)

    Mariano Raboso Mateos

    2009-04-01

    Full Text Available En este artículo se describe la interfaz de acceso a Matlab desde la plataforma XBDK (XML-Based Beamforming Development Kit. La contribución más novedosa es la utilización del lenguaje de script Tcl/Tk para el acceso al entorno Matlab utilizando las interfaces COM, ofrecidas por el servicio Matlab Automation Server. La utilización de lenguajes de script tiene innumerables ventajas a la hora de diseñar, construir y depurar prototipos o automatizar procesos. Muchas de las herramientas que se utilizan hoy en día para procesado de señal de una u otra manera permiten la utilización de lenguajes de script. La combinación de un lenguaje de script, con la posibilidad de acceder de forma detallada a los servicios de Matlab, proporciona una manera flexible, rápida y potente, de integrar servicios en una herramienta CASE integrada como XBDK.This paper describes Matlab access within the XBDK (XML-Based Beamforming Development Kit platform. A well-known script language named Tcl/Tk has been used to perform Matlab COM interfacing, a powerful and little known mechanism, provided by Matlab Automation Server. Automation processing or prototype development, take advantage from script languages such Tcl/Tk. Most recent digital signal processing tools, provide mechanisms to be invoked by script languages. A language script plus COM integration, performs a detail, flexible, quick and powerful mechanism to provide services for a CASE integrated development environment such XBDK.

  9. MASCOT - MATLAB Stability and Control Toolbox

    Science.gov (United States)

    Kenny, Sean; Crespo, Luis

    2011-01-01

    MASCOT software was created to provide the conceptual aircraft designer accurate predictions of air vehicle stability and control characteristics. The code takes as input mass property data in the form of an inertia tensor, aerodynamic loading data, and propulsion (i.e. thrust) loading data. Using fundamental non-linear equations of motion, MASCOT then calculates vehicle trim and static stability data for any desired flight condition. Common predefined flight conditions are included. The predefined flight conditions include six horizontal and six landing rotation conditions with varying options for engine out, crosswind and sideslip, plus three takeoff rotation conditions. Results are displayed through a unique graphical interface developed to provide stability and control information to the conceptual design engineers using a qualitative scale indicating whether the vehicle has acceptable, marginal, or unacceptable static stability characteristics. This software allows the user to prescribe the vehicle s CG location, mass, and inertia tensor so that any loading configuration between empty weight and maximum take-off weight can be analyzed. The required geometric and aerodynamic data as well as mass and inertia properties may be entered directly, passed through data files, or come from external programs such as Vehicle Sketch Pad (VSP). The current version of MASCOT has been tested with VSP used to compute the required data, which is then passed directly into the program. In VSP, the vehicle geometry is created and manipulated. The aerodynamic coefficients, stability and control derivatives, are calculated using VorLax, which is now available directly within VSP. MASCOT has been written exclusively using the technical computing language MATLAB . This innovation is able to bridge the gap between low-fidelity conceptual design and higher-fidelity stability and control analysis. This new tool enables the conceptual design engineer to include detailed static stability

  10. APM_GUI: analyzing particle movement on the cell membrane and determining confinement.

    Science.gov (United States)

    Menchón, Silvia A; Martín, Mauricio G; Dotti, Carlos G

    2012-02-20

    Single-particle tracking is a powerful tool for tracking individual particles with high precision. It provides useful information that allows the study of diffusion properties as well as the dynamics of movement. Changes in particle movement behavior, such as transitions between Brownian motion and temporary confinement, can reveal interesting biophysical interactions. Although useful applications exist to determine the paths of individual particles, only a few software implementations are available to analyze these data, and these implementations are generally not user-friendly and do not have a graphical interface,. Here, we present APM_GUI (Analyzing Particle Movement), which is a MatLab-implemented application with a Graphical User Interface. This user-friendly application detects confined movement considering non-random confinement when a particle remains in a region longer than a Brownian diffusant would remain. In addition, APM_GUI exports the results, which allows users to analyze this information using software that they are familiar with. APM_GUI provides an open-source tool that quantifies diffusion coefficients and determines whether trajectories have non-random confinements. It also offers a simple and user-friendly tool that can be used by individuals without programming skills.

  11. APM_GUI: analyzing particle movement on the cell membrane and determining confinement

    Directory of Open Access Journals (Sweden)

    Menchón Silvia A

    2012-02-01

    Full Text Available Abstract Background Single-particle tracking is a powerful tool for tracking individual particles with high precision. It provides useful information that allows the study of diffusion properties as well as the dynamics of movement. Changes in particle movement behavior, such as transitions between Brownian motion and temporary confinement, can reveal interesting biophysical interactions. Although useful applications exist to determine the paths of individual particles, only a few software implementations are available to analyze these data, and these implementations are generally not user-friendly and do not have a graphical interface,. Results Here, we present APM_GUI (Analyzing Particle Movement, which is a MatLab-implemented application with a Graphical User Interface. This user-friendly application detects confined movement considering non-random confinement when a particle remains in a region longer than a Brownian diffusant would remain. In addition, APM_GUI exports the results, which allows users to analyze this information using software that they are familiar with. Conclusions APM_GUI provides an open-source tool that quantifies diffusion coefficients and determines whether trajectories have non-random confinements. It also offers a simple and user-friendly tool that can be used by individuals without programming skills.

  12. Emotion scents: a method of representing user emotions on GUI widgets

    Science.gov (United States)

    Cernea, Daniel; Weber, Christopher; Ebert, Achim; Kerren, Andreas

    2013-01-01

    The world of desktop interfaces has been dominated for years by the concept of windows and standardized user interface (UI) components. Still, while supporting the interaction and information exchange between the users and the computer system, graphical user interface (GUI) widgets are rather one-sided, neglecting to capture the subjective facets of the user experience. In this paper, we propose a set of design guidelines for visualizing user emotions on standard GUI widgets (e.g., buttons, check boxes, etc.) in order to enrich the interface with a new dimension of subjective information by adding support for emotion awareness as well as post-task analysis and decision making. We highlight the use of an EEG headset for recording the various emotional states of the user while he/she is interacting with the widgets of the interface. We propose a visualization approach, called emotion scents, that allows users to view emotional reactions corresponding to di erent GUI widgets without in uencing the layout or changing the positioning of these widgets. Our approach does not focus on highlighting the emotional experience during the interaction with an entire system, but on representing the emotional perceptions and reactions generated by the interaction with a particular UI component. Our research is motivated by enabling emotional self-awareness and subjectivity analysis through the proposed emotionenhanced UI components for desktop interfaces. These assumptions are further supported by an evaluation of emotion scents.

  13. MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory.

    Science.gov (United States)

    Tek, Alex; Korostelev, Andrei A; Flores, Samuel Coulbourn

    2016-01-08

    Easy-to-use macromolecular viewers, such as UCSF Chimera, are a standard tool in structural biology. They allow rendering and performing geometric operations on large complexes, such as viruses and ribosomes. Dynamical simulation codes enable modeling of conformational changes, but may require considerable time and many CPUs. There is an unmet demand from structural and molecular biologists for software in the middle ground, which would allow visualization combined with quick and interactive modeling of conformational changes, even of large complexes. This motivates MMB-GUI. MMB uses an internal-coordinate, multiscale approach, yielding as much as a 2000-fold speedup over conventional simulation methods. We use Chimera as an interactive graphical interface to control MMB. We show how this can be used for morphing of macromolecules that can be heterogeneous in biopolymer type, sequence, and chain count, accurately recapitulating structural intermediates. We use MMB-GUI to create a possible trajectory of EF-G mediated gate-passing translocation in the ribosome, with all-atom structures. This shows that the GUI makes modeling of large macromolecules accessible to a wide audience. The morph highlights similarities in tRNA conformational changes as tRNA translocates from A to P and from P to E sites and suggests that tRNA flexibility is critical for translocation completion. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  14. Graphical User Interface (GUI) for the Warfighter Physiological Status Monitoring (WPSM) System - U.S. Army Medic Recommendations

    National Research Council Canada - National Science Library

    Tharion, William J; Kaushik, Sangeeta

    2006-01-01

    .... This information is sent wirelessly to a personal digital assistant (PDA) held by the medic. The primary purpose of this study was to determine what features should be included in the graphical user interface (GUI...

  15. Programming for computations MATLAB/Octave : a gentle introduction to numerical simulations with MATLAB/Octave

    CERN Document Server

    Linge, Svein

    2016-01-01

    This book presents computer programming as a key method for solving mathematical problems. There are two versions of the book, one for MATLAB and one for Python. The book was inspired by the Springer book TCSE 6: A Primer on Scientific Programming with Python (by Langtangen), but the style is more accessible and concise, in keeping with the needs of engineering students. The book outlines the shortest possible path from no previous experience with programming to a set of skills that allows the students to write simple programs for solving common mathematical problems with numerical methods in engineering and science courses. The emphasis is on generic algorithms, clean design of programs, use of functions, and automatic tests for verification.

  16. VQone MATLAB toolbox: A graphical experiment builder for image and video quality evaluations: VQone MATLAB toolbox.

    Science.gov (United States)

    Nuutinen, Mikko; Virtanen, Toni; Rummukainen, Olli; Häkkinen, Jukka

    2016-03-01

    This article presents VQone, a graphical experiment builder, written as a MATLAB toolbox, developed for image and video quality ratings. VQone contains the main elements needed for the subjective image and video quality rating process. This includes building and conducting experiments and data analysis. All functions can be controlled through graphical user interfaces. The experiment builder includes many standardized image and video quality rating methods. Moreover, it enables the creation of new methods or modified versions from standard methods. VQone is distributed free of charge under the terms of the GNU general public license and allows code modifications to be made so that the program's functions can be adjusted according to a user's requirements. VQone is available for download from the project page (http://www.helsinki.fi/psychology/groups/visualcognition/).

  17. Development of a fault test experimental facility model using Matlab

    Energy Technology Data Exchange (ETDEWEB)

    Pereira, Iraci Martinez; Moraes, Davi Almeida, E-mail: martinez@ipen.br, E-mail: dmoraes@dk8.com.br [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)

    2015-07-01

    The Fault Test Experimental Facility was developed to simulate a PWR nuclear power plant and is instrumented with temperature, level and pressure sensors. The Fault Test Experimental Facility can be operated to generate normal and fault data, and these failures can be added initially small, and their magnitude being increasing gradually. This work presents the Fault Test Experimental Facility model developed using the Matlab GUIDE (Graphical User Interface Development Environment) toolbox that consists of a set of functions designed to create interfaces in an easy and fast way. The system model is based on the mass and energy inventory balance equations. Physical as well as operational aspects are taken into consideration. The interface layout looks like a process flowchart and the user can set the input variables. Besides the normal operation conditions, there is the possibility to choose a faulty variable from a list. The program also allows the user to set the noise level for the input variables. Using the model, data were generated for different operational conditions, both under normal and fault conditions with different noise levels added to the input variables. Data generated by the model will be compared with Fault Test Experimental Facility data. The Fault Test Experimental Facility theoretical model results will be used for the development of a Monitoring and Fault Detection System. (author)

  18. Designing an ultrafast laser virtual laboratory using MATLAB GUIDE

    International Nuclear Information System (INIS)

    Cambronero-López, F; Gómez-Varela, A I; Bao-Varela, C

    2017-01-01

    In this work we present a virtual simulator developed using the MATLAB GUIDE environment based on the numerical resolution of the nonlinear Schrödinger equation (NLS) and using the split step method for the study of the spatial–temporal propagation of nonlinear ultrashort laser pulses. This allows us to study the spatial–temporal propagation of ultrafast pulses as well as the influence of high-order spectral phases such as group delay dispersion and third-order dispersion on pulse compression in time. The NLS can describe several nonlinear effects, in particular in this paper we consider the Kerr effect, cross-polarized wave generation and cubic–quintic propagation in order to highlight the potential of this equation combined with the GUIDE environment. Graphical user interfaces are commonly used in science and engineering teaching due to their educational value, and have proven to be an effective way to engage and motivate students. Specifically, the interactive graphical interfaces presented provide the visualization of some of the most important nonlinear optics phenomena and allows users to vary the values of the main parameters involved. (paper)

  19. A Series of Computational Neuroscience Labs Increases Comfort with MATLAB.

    Science.gov (United States)

    Nichols, David F

    2015-01-01

    Computational simulations allow for a low-cost, reliable means to demonstrate complex and often times inaccessible concepts to undergraduates. However, students without prior computer programming training may find working with code-based simulations to be intimidating and distracting. A series of computational neuroscience labs involving the Hodgkin-Huxley equations, an Integrate-and-Fire model, and a Hopfield Memory network were used in an undergraduate neuroscience laboratory component of an introductory level course. Using short focused surveys before and after each lab, student comfort levels were shown to increase drastically from a majority of students being uncomfortable or with neutral feelings about working in the MATLAB environment to a vast majority of students being comfortable working in the environment. Though change was reported within each lab, a series of labs was necessary in order to establish a lasting high level of comfort. Comfort working with code is important as a first step in acquiring computational skills that are required to address many questions within neuroscience.

  20. MATLAB Stability and Control Toolbox Trim and Static Stability Module

    Science.gov (United States)

    Kenny, Sean P.; Crespo, Luis

    2012-01-01

    MATLAB Stability and Control Toolbox (MASCOT) utilizes geometric, aerodynamic, and inertial inputs to calculate air vehicle stability in a variety of critical flight conditions. The code is based on fundamental, non-linear equations of motion and is able to translate results into a qualitative, graphical scale useful to the non-expert. MASCOT was created to provide the conceptual aircraft designer accurate predictions of air vehicle stability and control characteristics. The code takes as input mass property data in the form of an inertia tensor, aerodynamic loading data, and propulsion (i.e. thrust) loading data. Using fundamental nonlinear equations of motion, MASCOT then calculates vehicle trim and static stability data for the desired flight condition(s). Available flight conditions include six horizontal and six landing rotation conditions with varying options for engine out, crosswind, and sideslip, plus three take-off rotation conditions. Results are displayed through a unique graphical interface developed to provide the non-stability and control expert conceptual design engineer a qualitative scale indicating whether the vehicle has acceptable, marginal, or unacceptable static stability characteristics. If desired, the user can also examine the detailed, quantitative results.

  1. Designing an ultrafast laser virtual laboratory using MATLAB GUIDE

    Science.gov (United States)

    Cambronero-López, F.; Gómez-Varela, A. I.; Bao-Varela, C.

    2017-05-01

    In this work we present a virtual simulator developed using the MATLAB GUIDE environment based on the numerical resolution of the nonlinear Schrödinger equation (NLS) and using the split step method for the study of the spatial-temporal propagation of nonlinear ultrashort laser pulses. This allows us to study the spatial-temporal propagation of ultrafast pulses as well as the influence of high-order spectral phases such as group delay dispersion and third-order dispersion on pulse compression in time. The NLS can describe several nonlinear effects, in particular in this paper we consider the Kerr effect, cross-polarized wave generation and cubic-quintic propagation in order to highlight the potential of this equation combined with the GUIDE environment. Graphical user interfaces are commonly used in science and engineering teaching due to their educational value, and have proven to be an effective way to engage and motivate students. Specifically, the interactive graphical interfaces presented provide the visualization of some of the most important nonlinear optics phenomena and allows users to vary the values of the main parameters involved.

  2. Development of a fault test experimental facility model using Matlab

    International Nuclear Information System (INIS)

    Pereira, Iraci Martinez; Moraes, Davi Almeida

    2015-01-01

    The Fault Test Experimental Facility was developed to simulate a PWR nuclear power plant and is instrumented with temperature, level and pressure sensors. The Fault Test Experimental Facility can be operated to generate normal and fault data, and these failures can be added initially small, and their magnitude being increasing gradually. This work presents the Fault Test Experimental Facility model developed using the Matlab GUIDE (Graphical User Interface Development Environment) toolbox that consists of a set of functions designed to create interfaces in an easy and fast way. The system model is based on the mass and energy inventory balance equations. Physical as well as operational aspects are taken into consideration. The interface layout looks like a process flowchart and the user can set the input variables. Besides the normal operation conditions, there is the possibility to choose a faulty variable from a list. The program also allows the user to set the noise level for the input variables. Using the model, data were generated for different operational conditions, both under normal and fault conditions with different noise levels added to the input variables. Data generated by the model will be compared with Fault Test Experimental Facility data. The Fault Test Experimental Facility theoretical model results will be used for the development of a Monitoring and Fault Detection System. (author)

  3. POST II Trajectory Animation Tool Using MATLAB, V1.0

    Science.gov (United States)

    Raiszadeh, Behzad

    2005-01-01

    A trajectory animation tool has been developed for accurately depicting position and the attitude of the bodies in flight. The movies generated from This MATLAB based tool serve as an engineering analysis aid to gain further understanding into the dynamic behavior of bodies in flight. This tool has been designed to interface with the output generated from POST II simulations, and is able to animate a single as well as multiple vehicles in flight.

  4. An Open-source Toolbox for Analysing and Processing PhysioNet Databases in MATLAB and Octave

    Directory of Open Access Journals (Sweden)

    Ikaro Silva

    2014-09-01

    Full Text Available The WaveForm DataBase (WFDB Toolbox for MATLAB/Octave enables  integrated access to PhysioNet's software and databases. Using the WFDB Toolbox for MATLAB/Octave, users have access to over 50 physiological databases in PhysioNet. The toolbox allows direct loading into MATLAB/Octave's workspace of over 4 TB of biomedical signals including ECG, EEG, EMG, and PLETH. Additionally, most signals are accompanied by meta data such as medical annotations of clinical events: arrhythmias, sleep stages, seizures, hypotensive episodes, etc. Users of this toolbox should easily be able to reproduce, validate, and compare results published based on PhysioNet's software and databases.

  5. Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.

    Science.gov (United States)

    Ullah, M; Schmidt, H; Cho, K H; Wolkenhauer, O

    2006-03-01

    The analysis of complex biochemical networks is conducted in two popular conceptual frameworks for modelling. The deterministic approach requires the solution of ordinary differential equations (ODEs, reaction rate equations) with concentrations as continuous state variables. The stochastic approach involves the simulation of differential-difference equations (chemical master equations, CMEs) with probabilities as variables. This is to generate counts of molecules for chemical species as realisations of random variables drawn from the probability distribution described by the CMEs. Although there are numerous tools available, many of them free, the modelling and simulation environment MATLAB is widely used in the physical and engineering sciences. We describe a collection of MATLAB functions to construct and solve ODEs for deterministic simulation and to implement realisations of CMEs for stochastic simulation using advanced MATLAB coding (Release 14). The program was successfully applied to pathway models from the literature for both cases. The results were compared to implementations using alternative tools for dynamic modelling and simulation of biochemical networks. The aim is to provide a concise set of MATLAB functions that encourage the experimentation with systems biology models. All the script files are available from www.sbi.uni-rostock.de/ publications_matlab-paper.html.

  6. An Open-source Toolbox for Analysing and Processing PhysioNet Databases in MATLAB and Octave.

    Science.gov (United States)

    Silva, Ikaro; Moody, George B

    The WaveForm DataBase (WFDB) Toolbox for MATLAB/Octave enables integrated access to PhysioNet's software and databases. Using the WFDB Toolbox for MATLAB/Octave, users have access to over 50 physiological databases in PhysioNet. The toolbox provides access over 4 TB of biomedical signals including ECG, EEG, EMG, and PLETH. Additionally, most signals are accompanied by metadata such as medical annotations of clinical events: arrhythmias, sleep stages, seizures, hypotensive episodes, etc. Users of this toolbox should easily be able to reproduce, validate, and compare results published based on PhysioNet's software and databases.

  7. Guión de video conferencia para orientaciones metodológicas a los facilitadores de biología celular y molecular A Program based on video- conferences for methodological orientations to the professors of cell and molecular biology

    Directory of Open Access Journals (Sweden)

    Maritza Linares Guerra

    2007-06-01

    Full Text Available Con el objetivo de orientar metodológicamente, a través de una video-conferencia, a los facilitadotes que se inician en la enseñanza de la Biología Celular y Molecular, a estudiantes del primer año de Medicina del Proyecto Policlínico Universitario, se confeccionó un guión con los aspectos metodológicos de relevancia para preparar a los facilitadotes. A través de imágenes en Power Point se orientaron aspectos relacionados con la caracterización de la asignatura, su organización desde el punto de vista didáctico en cinco sistemas: sistema de objetivos, de conocimientos, de habilidades, de clases y de evaluación, se dan además las indicaciones generales para el estudio de la asignatura. Se hizo particular énfasis en la estructura metodológica y el papel del facilitador en las diferentes formas organizativas del proceso docente dentro del sistema de clases. Se realizó además un recorrido por los contenidos de los ocho temas de la asignatura, demostrando la importancia de la sistematización de la enseñanza y la forma en que se organizan los contenidos desde un nivel de menor a otro de mayor complejidad. Se concluye que la video conferencia de orientaciones metodológicas representa una herramienta útil para todos aquellos facilitadotes que se inician en la enseñanza de una ciencia biomédica y sobre todo para aquellos que se encuentran distantes y no tienen posibilidades de comunicación personal frecuente con los asesores metodológicos de la sede central.In order to guide methodologically the Cell and Molecular Biology Professors by means of video conferences to the students of the 1st academic year of medicine according to the College Out-patient Project, it was designed a program with the most important methodological aspects for preparing the professors. By means of imaging in Power points, the aspects related to the Subject and their organizations from the didactic point of view in five systems were given: Objectives

  8. Piezoelectric Actuator Modeling Using MSC/NASTRAN and MATLAB

    Science.gov (United States)

    Reaves, Mercedes C.; Horta, Lucas G.

    2003-01-01

    This paper presents a procedure for modeling structures containing piezoelectric actuators using MSCMASTRAN and MATLAB. The paper describes the utility and functionality of one set of validated modeling tools. The tools described herein use MSCMASTRAN to model the structure with piezoelectric actuators and a thermally induced strain to model straining of the actuators due to an applied voltage field. MATLAB scripts are used to assemble the dynamic equations and to generate frequency response functions. The application of these tools is discussed using a cantilever aluminum beam with a surface mounted piezoelectric actuator as a sample problem. Software in the form of MSCINASTRAN DMAP input commands, MATLAB scripts, and a step-by-step procedure to solve the example problem are provided. Analysis results are generated in terms of frequency response functions from deflection and strain data as a function of input voltage to the actuator.

  9. Introduction to multifractal detrended fluctuation analysis in matlab.

    Science.gov (United States)

    Ihlen, Espen A F

    2012-01-01

    Fractal structures are found in biomedical time series from a wide range of physiological phenomena. The multifractal spectrum identifies the deviations in fractal structure within time periods with large and small fluctuations. The present tutorial is an introduction to multifractal detrended fluctuation analysis (MFDFA) that estimates the multifractal spectrum of biomedical time series. The tutorial presents MFDFA step-by-step in an interactive Matlab session. All Matlab tools needed are available in Introduction to MFDFA folder at the website www.ntnu.edu/inm/geri/software. MFDFA are introduced in Matlab code boxes where the reader can employ pieces of, or the entire MFDFA to example time series. After introducing MFDFA, the tutorial discusses the best practice of MFDFA in biomedical signal processing. The main aim of the tutorial is to give the reader a simple self-sustained guide to the implementation of MFDFA and interpretation of the resulting multifractal spectra.

  10. STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

    KAUST Repository

    Klingbeil, G.

    2011-02-25

    Motivation: The importance of stochasticity in biological systems is becoming increasingly recognized and the computational cost of biologically realistic stochastic simulations urgently requires development of efficient software. We present a new software tool STOCHSIMGPU that exploits graphics processing units (GPUs) for parallel stochastic simulations of biological/chemical reaction systems and show that significant gains in efficiency can be made. It is integrated into MATLAB and works with the Systems Biology Toolbox 2 (SBTOOLBOX2) for MATLAB. Results: The GPU-based parallel implementation of the Gillespie stochastic simulation algorithm (SSA), the logarithmic direct method (LDM) and the next reaction method (NRM) is approximately 85 times faster than the sequential implementation of the NRM on a central processing unit (CPU). Using our software does not require any changes to the user\\'s models, since it acts as a direct replacement of the stochastic simulation software of the SBTOOLBOX2. © The Author 2011. Published by Oxford University Press. All rights reserved.

  11. OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB.

    Directory of Open Access Journals (Sweden)

    Lucian A B Purvis

    Full Text Available In vivo magnetic resonance spectroscopy provides insight into metabolism in the human body. New acquisition protocols are often proposed to improve the quality or efficiency of data collection. Processing pipelines must also be developed to use these data optimally. Current fitting software is either targeted at general spectroscopy fitting, or for specific protocols. We therefore introduce the MATLAB-based OXford Spectroscopy Analysis (OXSA toolbox to allow researchers to rapidly develop their own customised processing pipelines. The toolbox aims to simplify development by: being easy to install and use; seamlessly importing Siemens Digital Imaging and Communications in Medicine (DICOM standard data; allowing visualisation of spectroscopy data; offering a robust fitting routine; flexibly specifying prior knowledge when fitting; and allowing batch processing of spectra. This article demonstrates how each of these criteria have been fulfilled, and gives technical details about the implementation in MATLAB. The code is freely available to download from https://github.com/oxsatoolbox/oxsa.

  12. Radial basis function (RBF) neural network control for mechanical systems design, analysis and Matlab simulation

    CERN Document Server

    Liu, Jinkun

    2013-01-01

    Radial Basis Function (RBF) Neural Network Control for Mechanical Systems is motivated by the need for systematic design approaches to stable adaptive control system design using neural network approximation-based techniques. The main objectives of the book are to introduce the concrete design methods and MATLAB simulation of stable adaptive RBF neural control strategies. In this book, a broad range of implementable neural network control design methods for mechanical systems are presented, such as robot manipulators, inverted pendulums, single link flexible joint robots, motors, etc. Advanced neural network controller design methods and their stability analysis are explored. The book provides readers with the fundamentals of neural network control system design.   This book is intended for the researchers in the fields of neural adaptive control, mechanical systems, Matlab simulation, engineering design, robotics and automation. Jinkun Liu is a professor at Beijing University of Aeronautics and Astronauti...

  13. The Application of PSIM & Matlab/ Simulink in Teaching of Power Electronics Courses

    Directory of Open Access Journals (Sweden)

    Sameer Hanna Khader

    2011-07-01

    Full Text Available This paper presents a comparison analysis between two engineering software platforms, Matlab/Simulink & PSIM, which are used as major educational tools in teaching of power electronics and electrical drive courses, in additional to conducted research in these fields. The comparison analysis is based on studying the design simplicity of the module, time consumed in building of the module, accuracy, functionality, simulation time, and the acceptability of obtained results. Various power electronic simulation circuits are illustrated and the results are processed and displayed. The simulation results states that Matlab/Simulink is a suitable platform for control and regulation of simulation processes, in additional to its dominant role in conducting research tasks. Conversely, PSIM is dedicated to power electronic circuits and machine simulation tasks with fast and robust algorithms and suitable for educational purposes. It is recommended that both packages can be used in teaching power electronics courses.

  14. Image enhancement using MCNP5 code and MATLAB in neutron radiography.

    Science.gov (United States)

    Tharwat, Montaser; Mohamed, Nader; Mongy, T

    2014-07-01

    This work presents a method that can be used to enhance the neutron radiography (NR) image for objects with high scattering materials like hydrogen, carbon and other light materials. This method used Monte Carlo code, MCNP5, to simulate the NR process and get the flux distribution for each pixel of the image and determines the scattered neutron distribution that caused image blur, and then uses MATLAB to subtract this scattered neutron distribution from the initial image to improve its quality. This work was performed before the commissioning of digital NR system in Jan. 2013. The MATLAB enhancement method is quite a good technique in the case of static based film neutron radiography, while in neutron imaging (NI) technique, image enhancement and quantitative measurement were efficient by using ImageJ software. The enhanced image quality and quantitative measurements were presented in this work. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB.

    Science.gov (United States)

    Purvis, Lucian A B; Clarke, William T; Biasiolli, Luca; Valkovič, Ladislav; Robson, Matthew D; Rodgers, Christopher T

    2017-01-01

    In vivo magnetic resonance spectroscopy provides insight into metabolism in the human body. New acquisition protocols are often proposed to improve the quality or efficiency of data collection. Processing pipelines must also be developed to use these data optimally. Current fitting software is either targeted at general spectroscopy fitting, or for specific protocols. We therefore introduce the MATLAB-based OXford Spectroscopy Analysis (OXSA) toolbox to allow researchers to rapidly develop their own customised processing pipelines. The toolbox aims to simplify development by: being easy to install and use; seamlessly importing Siemens Digital Imaging and Communications in Medicine (DICOM) standard data; allowing visualisation of spectroscopy data; offering a robust fitting routine; flexibly specifying prior knowledge when fitting; and allowing batch processing of spectra. This article demonstrates how each of these criteria have been fulfilled, and gives technical details about the implementation in MATLAB. The code is freely available to download from https://github.com/oxsatoolbox/oxsa.

  16. GuiTope: an application for mapping random-sequence peptides to protein sequences.

    Science.gov (United States)

    Halperin, Rebecca F; Stafford, Phillip; Emery, Jack S; Navalkar, Krupa Arun; Johnston, Stephen Albert

    2012-01-03

    Random-sequence peptide libraries are a commonly used tool to identify novel ligands for binding antibodies, other proteins, and small molecules. It is often of interest to compare the selected peptide sequences to the natural protein binding partners to infer the exact binding site or the importance of particular residues. The ability to search a set of sequences for similarity to a set of peptides may sometimes enable the prediction of an antibody epitope or a novel binding partner. We have developed a software application designed specifically for this task. GuiTope provides a graphical user interface for aligning peptide sequences to protein sequences. All alignment parameters are accessible to the user including the ability to specify the amino acid frequency in the peptide library; these frequencies often differ significantly from those assumed by popular alignment programs. It also includes a novel feature to align di-peptide inversions, which we have found improves the accuracy of antibody epitope prediction from peptide microarray data and shows utility in analyzing phage display datasets. Finally, GuiTope can randomly select peptides from a given library to estimate a null distribution of scores and calculate statistical significance. GuiTope provides a convenient method for comparing selected peptide sequences to protein sequences, including flexible alignment parameters, novel alignment features, ability to search a database, and statistical significance of results. The software is available as an executable (for PC) at http://www.immunosignature.com/software and ongoing updates and source code will be available at sourceforge.net.

  17. GuiTope: an application for mapping random-sequence peptides to protein sequences

    Directory of Open Access Journals (Sweden)

    Halperin Rebecca F

    2012-01-01

    Full Text Available Abstract Background Random-sequence peptide libraries are a commonly used tool to identify novel ligands for binding antibodies, other proteins, and small molecules. It is often of interest to compare the selected peptide sequences to the natural protein binding partners to infer the exact binding site or the importance of particular residues. The ability to search a set of sequences for similarity to a set of peptides may sometimes enable the prediction of an antibody epitope or a novel binding partner. We have developed a software application designed specifically for this task. Results GuiTope provides a graphical user interface for aligning peptide sequences to protein sequences. All alignment parameters are accessible to the user including the ability to specify the amino acid frequency in the peptide library; these frequencies often differ significantly from those assumed by popular alignment programs. It also includes a novel feature to align di-peptide inversions, which we have found improves the accuracy of antibody epitope prediction from peptide microarray data and shows utility in analyzing phage display datasets. Finally, GuiTope can randomly select peptides from a given library to estimate a null distribution of scores and calculate statistical significance. Conclusions GuiTope provides a convenient method for comparing selected peptide sequences to protein sequences, including flexible alignment parameters, novel alignment features, ability to search a database, and statistical significance of results. The software is available as an executable (for PC at http://www.immunosignature.com/software and ongoing updates and source code will be available at sourceforge.net.

  18. GUI2QAD-3D a graphical interface program for QAD-CGPIC program

    International Nuclear Information System (INIS)

    Subbaiah, K.V.; Sarangapani, R.

    2002-01-01

    Full text: A point kernel code, QAD-CGPIC is developed by combining QAD-CGGP1 and PICTURE2 in a consistent fashion to utilize the capabilities of two independent codes. The code can be used for shielding calculations of gamma ray and fast neutron penetration through complex geometrical arrangements of shielding structures. Further modifications of the code are carried out to handle off-centered multiple identical sources. The input format structure is difficult to memorise while using the code. To circumvent this problem a graphical user friendly interface, GUI2QAD-3D is developed with online context sensitive help under WINDOWS environment in Visual Basic. Several Benchmark tests of inputs are carried out to validate the modified code. The package comes in one Compact Disc and includes inputs for several practical problems relating to nuclear fuel reprocessing labs. The salient features of QAD-CGPIC and GUI2QAD-3D are listed below: i) Handles off-centered multiple identical sources ii) Cylindrical sources can be oriented parallel to any of X, V, Z axes iii) Provides Plots of material cross sections and buildup factors for photons iv) Estimates dose rate for Point source-slab shield situations v) Interactive input preparation for the geometry vi) 3D view of the geometry with arbitrary rotation around X, Y or Z axes vii) Optional facility to indicate detector location viii) Provision to view Picture input file ix) Provision to calculate fission product gamma emission rates as function of time The code has been contributed to the computer code collection at Radiation Safety Information Computational centre (RSICC). The code is tested and validated at RSICC and listed as CCC-697-GUI2QAD-3D in their code depository

  19. OPTICON: Pro-Matlab software for large order controlled structure design

    Science.gov (United States)

    Peterson, Lee D.

    1989-01-01

    A software package for large order controlled structure design is described and demonstrated. The primary program, called OPTICAN, uses both Pro-Matlab M-file routines and selected compiled FORTRAN routines linked into the Pro-Matlab structure. The program accepts structural model information in the form of state-space matrices and performs three basic design functions on the model: (1) open loop analyses; (2) closed loop reduced order controller synthesis; and (3) closed loop stability and performance assessment. The current controller synthesis methods which were implemented in this software are based on the Generalized Linear Quadratic Gaussian theory of Bernstein. In particular, a reduced order Optimal Projection synthesis algorithm based on a homotopy solution method was successfully applied to an experimental truss structure using a 58-state dynamic model. These results are presented and discussed. Current plans to expand the practical size of the design model to several hundred states and the intention to interface Pro-Matlab to a supercomputing environment are discussed.

  20. Elements of matrix modeling and computing with Matlab

    CERN Document Server

    White, Robert E

    2006-01-01

    As discrete models and computing have become more common, there is a need to study matrix computation and numerical linear algebra. Encompassing a diverse mathematical core, Elements of Matrix Modeling and Computing with MATLAB examines a variety of applications and their modeling processes, showing you how to develop matrix models and solve algebraic systems. Emphasizing practical skills, it creates a bridge from problems with two and three variables to more realistic problems that have additional variables. Elements of Matrix Modeling and Computing with MATLAB focuses on seven basic applicat

  1. Instruction of pattern recognition by MATLAB practice 1

    International Nuclear Information System (INIS)

    1999-06-01

    This book describes the pattern recognition by MATLAB practice. It includes possibility and limit of AI, introduction of pattern recognition a vector and matrix, basic status and a probability theory, a random variable and probability distribution, statistical decision theory, data-mining, gaussian mixture model, a nerve cell modeling such as Hebb's learning rule, LMS learning rule, genetic algorithm, dynamic programming and DTW, HMN on Markov model and HMM's three problems and solution, introduction of SVM with KKT condition and margin optimum, kernel trick and MATLAB practice.

  2. Estimating aquifer transmissivity from specific capacity using MATLAB.

    Science.gov (United States)

    McLin, Stephen G

    2005-01-01

    Historically, specific capacity information has been used to calculate aquifer transmissivity when pumping test data are unavailable. This paper presents a simple computer program written in the MATLAB programming language that estimates transmissivity from specific capacity data while correcting for aquifer partial penetration and well efficiency. The program graphically plots transmissivity as a function of these factors so that the user can visually estimate their relative importance in a particular application. The program is compatible with any computer operating system running MATLAB, including Windows, Macintosh OS, Linux, and Unix. Two simple examples illustrate program usage.

  3. Simplifying the Access to HPC Resources by Integrating them in the Application GUI

    KAUST Repository

    van Waveren, Matthijs

    2016-06-22

    The computing landscape of KAUST is increasing in complexity. Researchers have access to the 9th fastest supercomputer in the world (Shaheen II) and several other HPC clusters. They work on local Windows, Mac, or Linux workstations. In order to facilitate the access of the HPC systems, we have developed interfaces to several research applications that automate input data transfer, job submission and retrieval of results. The user now submits his jobs to the cluster from within the application GUI on his workstation, and does not have to physically go onto the cluster anymore.

  4. UmUTracker: A versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data

    Science.gov (United States)

    Zhang, Hanqing; Stangner, Tim; Wiklund, Krister; Rodriguez, Alvaro; Andersson, Magnus

    2017-10-01

    We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing video sequences acquired by either light microscopy or digital in-line holographic microscopy. Our program detects the 2D lateral positions of particles with an algorithm based on the isosceles triangle transform, and reconstructs their 3D axial positions by a fast implementation of the Rayleigh-Sommerfeld model using a radial intensity profile. To validate the accuracy and performance of our program, we first track the 2D position of polystyrene particles using bright field and digital holographic microscopy. Second, we determine the 3D particle position by analyzing synthetic and experimentally acquired holograms. Finally, to highlight the full program features, we profile the microfluidic flow in a 100 μm high flow chamber. This result agrees with computational fluid dynamic simulations. On a regular desktop computer UmUTracker can detect, analyze, and track multiple particles at 5 frames per second for a template size of 201 ×201 in a 1024 × 1024 image. To enhance usability and to make it easy to implement new functions we used object-oriented programming. UmUTracker is suitable for studies related to: particle dynamics, cell localization, colloids and microfluidic flow measurement. Program Files doi : http://dx.doi.org/10.17632/fkprs4s6xp.1 Licensing provisions : Creative Commons by 4.0 (CC by 4.0) Programming language : MATLAB Nature of problem: 3D multi-particle tracking is a common technique in physics, chemistry and biology. However, in terms of accuracy, reliable particle tracking is a challenging task since results depend on sample illumination, particle overlap, motion blur and noise from recording sensors. Additionally, the computational performance is also an issue if, for example, a computationally expensive process is executed, such as axial particle position reconstruction from digital holographic microscopy data. Versatile

  5. Using MATLAB software with Tomcat server and Java platform for remote image analysis in pathology.

    Science.gov (United States)

    Markiewicz, Tomasz

    2011-03-30

    The Matlab software is a one of the most advanced development tool for application in engineering practice. From our point of view the most important is the image processing toolbox, offering many built-in functions, including mathematical morphology, and implementation of a many artificial neural networks as AI. It is very popular platform for creation of the specialized program for image analysis, also in pathology. Based on the latest version of Matlab Builder Java toolbox, it is possible to create the software, serving as a remote system for image analysis in pathology via internet communication. The internet platform can be realized based on Java Servlet Pages with Tomcat server as servlet container. In presented software implementation we propose remote image analysis realized by Matlab algorithms. These algorithms can be compiled to executable jar file with the help of Matlab Builder Java toolbox. The Matlab function must be declared with the set of input data, output structure with numerical results and Matlab web figure. Any function prepared in that manner can be used as a Java function in Java Servlet Pages (JSP). The graphical user interface providing the input data and displaying the results (also in graphical form) must be implemented in JSP. Additionally the data storage to database can be implemented within algorithm written in Matlab with the help of Matlab Database Toolbox directly with the image processing. The complete JSP page can be run by Tomcat server. The proposed tool for remote image analysis was tested on the Computerized Analysis of Medical Images (CAMI) software developed by author. The user provides image and case information (diagnosis, staining, image parameter etc.). When analysis is initialized, input data with image are sent to servlet on Tomcat. When analysis is done, client obtains the graphical results as an image with marked recognized cells and also the quantitative output. Additionally, the results are stored in a server

  6. Time series analysis of cholera in Matlab, Bangladesh, during 1988-2001.

    Science.gov (United States)

    Ali, Mohammad; Kim, Deok Ryun; Yunus, Mohammad; Emch, Michael

    2013-03-01

    The study examined the impact of in-situ climatic and marine environmental variability on cholera incidence in an endemic area of Bangladesh and developed a forecasting model for understanding the magnitude of incidence. Diarrhoea surveillance data collected between 1988 and 2001 were obtained from a field research site in Matlab, Bangladesh. Cholera cases were defined as Vibrio cholerae O1 isolated from faecal specimens of patients who sought care at treatment centres serving the Matlab population. Cholera incidence for 168 months was correlated with remotely-sensed sea-surface temperature (SST) and in-situ environmental data, including rainfall and ambient temperature. A seasonal autoregressive integrated moving average (SARIMA) model was used for determining the impact of climatic and environmental variability on cholera incidence and evaluating the ability of the model to forecast the magnitude of cholera. There were 4,157 cholera cases during the study period, with an average of 1.4 cases per 1,000 people. Since monthly cholera cases varied significantly by month, it was necessary to stabilize the variance of cholera incidence by computing the natural logarithm to conduct the analysis. The SARIMA model shows temporal clustering of cholera at one- and 12-month lags. There was a 6% increase in cholera incidence with a minimum temperature increase of one degree celsius in the current month. For increase of SST by one degree celsius, there was a 25% increase in the cholera incidence at currrent month and 18% increase in the cholera incidence at two months. Rainfall did not influenc to cause variation in cholera incidence during the study period. The model forecast the fluctuation of cholera incidence in Matlab reasonably well (Root mean square error, RMSE: 0.108). Thus, the ambient and sea-surface temperature-based model could be used in forecasting cholera outbreaks in Matlab.

  7. Generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB.

    Science.gov (United States)

    Lee, Leng-Feng; Umberger, Brian R

    2016-01-01

    Computer modeling, simulation and optimization are powerful tools that have seen increased use in biomechanics research. Dynamic optimizations can be categorized as either data-tracking or predictive problems. The data-tracking approach has been used extensively to address human movement problems of clinical relevance. The predictive approach also holds great promise, but has seen limited use in clinical applications. Enhanced software tools would facilitate the application of predictive musculoskeletal simulations to clinically-relevant research. The open-source software OpenSim provides tools for generating tracking simulations but not predictive simulations. However, OpenSim includes an extensive application programming interface that permits extending its capabilities with scripting languages such as MATLAB. In the work presented here, we combine the computational tools provided by MATLAB with the musculoskeletal modeling capabilities of OpenSim to create a framework for generating predictive simulations of musculoskeletal movement based on direct collocation optimal control techniques. In many cases, the direct collocation approach can be used to solve optimal control problems considerably faster than traditional shooting methods. Cyclical and discrete movement problems were solved using a simple 1 degree of freedom musculoskeletal model and a model of the human lower limb, respectively. The problems could be solved in reasonable amounts of time (several seconds to 1-2 hours) using the open-source IPOPT solver. The problems could also be solved using the fmincon solver that is included with MATLAB, but the computation times were excessively long for all but the smallest of problems. The performance advantage for IPOPT was derived primarily by exploiting sparsity in the constraints Jacobian. The framework presented here provides a powerful and flexible approach for generating optimal control simulations of musculoskeletal movement using OpenSim and MATLAB. This

  8. DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data.

    Science.gov (United States)

    Hollunder, Jens; Friedel, Maik; Kuiper, Martin; Wilhelm, Thomas

    2010-04-01

    Many large 'omics' datasets have been published and many more are expected in the near future. New analysis methods are needed for best exploitation. We have developed a graphical user interface (GUI) for easy data analysis. Our discovery of all significant substructures (DASS) approach elucidates the underlying modularity, a typical feature of complex biological data. It is related to biclustering and other data mining approaches. Importantly, DASS-GUI also allows handling of multi-sets and calculation of statistical significances. DASS-GUI contains tools for further analysis of the identified patterns: analysis of the pattern hierarchy, enrichment analysis, module validation, analysis of additional numerical data, easy handling of synonymous names, clustering, filtering and merging. Different export options allow easy usage of additional tools such as Cytoscape. Source code, pre-compiled binaries for different systems, a comprehensive tutorial, case studies and many additional datasets are freely available at http://www.ifr.ac.uk/dass/gui/. DASS-GUI is implemented in Qt.

  9. Vectorized Matlab Codes for Linear Two-Dimensional Elasticity

    Directory of Open Access Journals (Sweden)

    Jonas Koko

    2007-01-01

    Full Text Available A vectorized Matlab implementation for the linear finite element is provided for the two-dimensional linear elasticity with mixed boundary conditions. Vectorization means that there is no loop over triangles. Numerical experiments show that our implementation is more efficient than the standard implementation with a loop over all triangles.

  10. A linear algebra course with PC-MATLAB : some experiences

    NARCIS (Netherlands)

    Smits, J.G.M.M.; Rijpkema, J.J.M.

    1992-01-01

    The authors present their views on the impact that the use of computers and software packages should have on the contents of a first service course on linear algebra. Furthermore they report on their experiences using the software package PC-MATLAB in such a course.

  11. Introduction of pattern recognition by MATLAB practice 2

    International Nuclear Information System (INIS)

    1999-06-01

    The contents of this book starts introduction and examples of pattern recognition. This book describes a vector and matrix, basic statistics and a probability distribution, statistical decision theory and probability density function, liner shunt, vector quantizing and clustering GMM, PCA and KL conversion, LDA, ID 3, a nerve cell modeling, HMM, SVM and Ada boost. It has direction of MATLAB in the appendix.

  12. MATLAB simulation for an experimental setup of digital feedback control

    International Nuclear Information System (INIS)

    Zheng Lifang; Liu Songqiang

    2005-01-01

    This paper describes the digital feedback simulation using MATLAB for an experimental accelerator control setup. By analyzing the plant characteristic in time-domain and frequency-domain, a guideline for design of digital filter and PID controller is derived. (authors)

  13. Benchmark Simulation Model No 2 in Matlab-Simulink

    DEFF Research Database (Denmark)

    Vrecko, Darko; Gernaey, Krist; Rosen, Christian

    2006-01-01

    In this paper, implementation of the Benchmark Simulation Model No 2 (BSM2) within Matlab-Simulink is presented. The BSM2 is developed for plant-wide WWTP control strategy evaluation on a long-term basis. It consists of a pre-treatment process, an activated sludge process and sludge treatment...

  14. DESAIN SIMULASI PEMBENTUKAN BAYANGAN PADA CERMIN CEMBUNG MENGGUNAKAN GUI BUILDER SCILAB 5.5.0

    Directory of Open Access Journals (Sweden)

    Erwin Randjawali

    2017-12-01

    Full Text Available Penelitian ini merupakan pengembangan dari makalah yang telah dipresentasikan pada Seminar Internasional namun menggunakan tipe cermin yang berbeda dan berbasis Graphical User Interface (GUI. Penelitian ini bertujuan untuk menghasilkan simulasi pembentukan bayangan pada cermin cembung sebagai media pembelajaran Fisika yang dapat digunakan secara mudah dan efektif. Penelitian ini bersifat studi literatur, dengan menggunakan metode komparatif antara hasil simulasi dan hasil analitik. Simulasi dalam penelitian ini dibuat menggunakan aplikasi Scilab 5.5.0 dengan GUI Builder versi 3.0, dengan memanfaatkan konsep Fisika dan Matematika, di mana cermin cembung disimulasikan menggunakan persamaan parametrik untuk lingkaran, sedangkan sinar-sinar istimewa disimulasikan menggunakan persamaan garis lurus dengan gradien tertentu. Dalam penelitian ini disimulasikan pembentukan bayangan dari sebuah benda dengan tinggi 7cm yang diletakkan pada jarak 15cm dari sebuah cermin cembung yang memiliki radius kelengkungan -30cm. Cermin cembung yang disimulasikan dalam penelitian ini diasumsikan sebagai sebuah permukaan datar. Simulasi yang telah dibuat dapat berjalan dengan baik pada Scilab 5.5.0. Dari hasil simulasi ini, diperoleh tinggi bayangan sebesar 3.5cm dan jarak bayangan sebesar -7.5cm. Hasil perhitungan ini dibandingkan dengan hasil perhitungan secara analitik, dan diperoleh error perhitungan sebesar 0%, dengan kata lain hasil tersebut sama dengan hasil yang diperoleh dengan cara analitik, dan sekaligus membenarkan pernyataan bahwa proses pembentukan bayangan pada cermin cembung lebih mudah untuk digambarkan apabila cermin tersebut dianggap sebagai sebuah permukaan datar. Dengan demikian, simulasi ini dapat digunakan dalam proses pembelajaran Fisika.

  15. Effect of GuiXiong Xiaoyi Wan in Treatment of Endometriosis on Rats

    Directory of Open Access Journals (Sweden)

    Zhixing Jin

    2015-01-01

    Full Text Available Objective. To evaluate the effect of GuiXiong Xiaoyi Wan (GXXYW on the development of endometriosis in a rat model. Methods. Sprague-Dawley rats with surgically induced endometriosis were randomly treated with low-dose GXXYW, high-dose GXXYW, or vehicle (negative control for 28 days. Immunohistochemistry was used to assess cell proliferation in the lesions. The terminal deoxynucleotidyl transferase- (TdT- mediated dUTP biotin nick end labelling (TUNEL method was performed to analyse the apoptosis induced by GuiXiong Xiaoyi Wan. The percentages of CD3+ lymphocytes, CD4+ lymphocytes, and CD8+ lymphocytes in the spleens of the rats were evaluated using flow cytometric analysis. Results. Treatment with GXXYW significantly decreased the lesion size, inhibited cell proliferation, and induced apoptosis in endometriotic tissue. The spleens of GXXYW-treated rats also demonstrated a significant increase in the percentage of CD4+ lymphocytes and a significant decrease in the percentage of CD8+ lymphocytes. Conclusions. These results suggest that, in a rat model, GXXYW may be effective in the suppression of the growth of endometriosis, possibly through the inhibition of cell proliferation, the induction of apoptosis of endometriotic cells, and the regulation of the immune system.

  16. GISMO: A MATLAB toolbox for seismic research, monitoring, & education

    Science.gov (United States)

    Thompson, G.; Reyes, C. G.; Kempler, L. A.

    2017-12-01

    GISMO is an open-source MATLAB toolbox which provides an object-oriented framework to build workflows and applications that read, process, visualize and write seismic waveform, catalog and instrument response data. GISMO can retrieve data from a variety of sources (e.g. FDSN web services, Earthworm/Winston servers) and data formats (SAC, Seisan, etc.). It can handle waveform data that crosses file boundaries. All this alleviates one of the most time consuming part for scientists developing their own codes. GISMO simplifies seismic data analysis by providing a common interface for your data, regardless of its source. Several common plots are built-in to GISMO, such as record section plots, spectrograms, depth-time sections, event count per unit time, energy release per unit time, etc. Other visualizations include map views and cross-sections of hypocentral data. Several common processing methods are also included, such as an extensive set of tools for correlation analysis. Support is being added to interface GISMO with ObsPy. GISMO encourages community development of an integrated set of codes and accompanying documentation, eliminating the need for seismologists to "reinvent the wheel". By sharing code the consistency and repeatability of results can be enhanced. GISMO is hosted on GitHub with documentation both within the source code and in the project wiki. GISMO has been used at the University of South Florida and University of Alaska Fairbanks in graduate-level courses including Seismic Data Analysis, Time Series Analysis and Computational Seismology. GISMO has also been tailored to interface with the common seismic monitoring software and data formats used by volcano observatories in the US and elsewhere. As an example, toolbox training was delivered to researchers at INETER (Nicaragua). Applications built on GISMO include IceWeb (e.g. web-based spectrograms), which has been used by Alaska Volcano Observatory since 1998 and became the prototype for the USGS

  17. tweezercalib 2.0: Faster version of MatLab package for precise calibration of optical tweezers

    DEFF Research Database (Denmark)

    Hansen, Poul Martin; Tolic-Nørrelykke, Iva Marija; Flyvbjerg, Henrik

    2006-01-01

    We present a vectorized version of the MatLab (MathWorks Inc) package tweezercalib for calibration of optical tweezers with precision. The calibration is based on the power spectrum of the Brownian motion of a dielectric bead trapped in the tweezers. Precision is achieved by accounting for a number...

  18. Description and Validation of a MATLAB

    DEFF Research Database (Denmark)

    Johra, Hicham; Heiselberg, Per

    This report aims to present the details and the validation tests of a single family house building energy model. The building model includes furniture / additional indoor content, phase change materials, ground source heat pump and water-based under floor heating system....

  19. Uncertainty quantification and stochastic modeling with Matlab

    CERN Document Server

    Souza de Cursi, Eduardo

    2015-01-01

    Uncertainty Quantification (UQ) is a relatively new research area which describes the methods and approaches used to supply quantitative descriptions of the effects of uncertainty, variability and errors in simulation problems and models. It is rapidly becoming a field of increasing importance, with many real-world applications within statistics, mathematics, probability and engineering, but also within the natural sciences. Literature on the topic has up until now been largely based on polynomial chaos, which raises difficulties when considering different types of approximation and does no

  20. SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

    Science.gov (United States)

    Vaudel, Marc; Barsnes, Harald; Berven, Frode S; Sickmann, Albert; Martens, Lennart

    2011-03-01

    The identification of proteins by mass spectrometry is a standard technique in the field of proteomics, relying on search engines to perform the identifications of the acquired spectra. Here, we present a user-friendly, lightweight and open-source graphical user interface called SearchGUI (http://searchgui.googlecode.com), for configuring and running the freely available OMSSA (open mass spectrometry search algorithm) and X!Tandem search engines simultaneously. Freely available under the permissible Apache2 license, SearchGUI is supported on Windows, Linux and OSX. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  1. Evaluating Direct Manipulation Operations for Constraint-Based Layout

    OpenAIRE

    Zeidler , Clemens; Lutteroth , Christof; Stuerzlinger , Wolfgang; Weber , Gerald

    2013-01-01

    Part 11: Interface Layout and Data Entry; International audience; Layout managers are used to control the placement of widgets in graphical user interfaces (GUIs). Constraint-based layout managers are more powerful than other ones. However, they are also more complex and their layouts are prone to problems that usually require direct editing of constraints. Today, designers commonly use GUI builders to specify GUIs. The complexities of traditional approaches to constraint-based layouts pose c...

  2. Dynamical systems with applications using MATLAB

    CERN Document Server

    Lynch, Stephen

    2014-01-01

    This textbook, now in its second edition, provides a broad introduction to both continuous and discrete dynamical systems, the theory of which is motivated by examples from a wide range of disciplines. It emphasizes applications and simulation utilizing MATLAB®, Simulink®, the Image Processing Toolbox™, and the Symbolic Math Toolbox™, including MuPAD. Features new to the second edition include, sections on series solutions of ordinary differential equations, perturbation methods, normal forms, Gröbner bases, and chaos synchronization; chapters on image processing and binary oscillator computing; hundreds of new illustrations, examples, and exercises with solutions; and over eighty up-to-date MATLAB® program files and Simulink model files available online. These files were voted MATLAB® Central Pick of the Week in July 2013.  The hands-on approach of Dynamical Systems with Applications using MATLAB®, Second Edition, has minimal prerequisites, only requiring familiarity with ordinary differential equ...

  3. Pemodelan Sistem Fuzzy Dengan Menggunakan Matlab

    Directory of Open Access Journals (Sweden)

    Afan Galih Salman

    2010-12-01

    Full Text Available Fuzzy logic is a method in soft computing category, a method that could process uncertain, inaccurate, and less cost implemented data. Some methods in soft computing category besides fuzzy logic are artificial network nerve, probabilistic reasoning, and evolutionary computing. Fuzzy logic has the ability to develop fuzzy system that is intelligent system in uncertain environment. Some stages in fuzzy system formation process is input and output analysis, determining input and output variable, defining each fuzzy set member function, determining rules based on experience or knowledge of an expert in his field, and implementing fuzzy system. Overall, fuzzy logic uses simple mathematical concept, understandable, detectable uncertain and accurate data. Fuzzy system could create and apply expert experiences directly without exercise process and effort to decode the knowledge into a computer until becoming a modeling system that could be relied on decision making.

  4. Advanced electric drives analysis, control, and modeling using MATLAB/Simulink

    CERN Document Server

    Mohan, Ned

    2014-01-01

    Advanced Electric Drives utilizes a physics-based approach to explain the fundamental concepts of modern electric drive control and its operation under dynamic conditions. Gives readers a "physical" picture of electric machines and drives without resorting to mathematical transformations for easy visualization Confirms the physics-based analysis of electric drives mathematically Provides readers with an analysis of electric machines in a way that can be easily interfaced to common power electronic converters and controlled using any control scheme Makes the MATLAB/Simulink files used in exampl

  5. mGrid: a load-balanced distributed computing environment for the remote execution of the user-defined Matlab code.

    Science.gov (United States)

    Karpievitch, Yuliya V; Almeida, Jonas S

    2006-03-15

    Matlab, a powerful and productive language that allows for rapid prototyping, modeling and simulation, is widely used in computational biology. Modeling and simulation of large biological systems often require more computational resources then are available on a single computer. Existing distributed computing environments like the Distributed Computing Toolbox, MatlabMPI, Matlab*G and others allow for the remote (and possibly parallel) execution of Matlab commands with varying support for features like an easy-to-use application programming interface, load-balanced utilization of resources, extensibility over the wide area network, and minimal system administration skill requirements. However, all of these environments require some level of access to participating machines to manually distribute the user-defined libraries that the remote call may invoke. mGrid augments the usual process distribution seen in other similar distributed systems by adding facilities for user code distribution. mGrid's client-side interface is an easy-to-use native Matlab toolbox that transparently executes user-defined code on remote machines (i.e. the user is unaware that the code is executing somewhere else). Run-time variables are automatically packed and distributed with the user-defined code and automated load-balancing of remote resources enables smooth concurrent execution. mGrid is an open source environment. Apart from the programming language itself, all other components are also open source, freely available tools: light-weight PHP scripts and the Apache web server. Transparent, load-balanced distribution of user-defined Matlab toolboxes and rapid prototyping of many simple parallel applications can now be done with a single easy-to-use Matlab command. Because mGrid utilizes only Matlab, light-weight PHP scripts and the Apache web server, installation and configuration are very simple. Moreover, the web-based infrastructure of mGrid allows for it to be easily extensible over

  6. mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code

    Directory of Open Access Journals (Sweden)

    Almeida Jonas S

    2006-03-01

    Full Text Available Abstract Background Matlab, a powerful and productive language that allows for rapid prototyping, modeling and simulation, is widely used in computational biology. Modeling and simulation of large biological systems often require more computational resources then are available on a single computer. Existing distributed computing environments like the Distributed Computing Toolbox, MatlabMPI, Matlab*G and others allow for the remote (and possibly parallel execution of Matlab commands with varying support for features like an easy-to-use application programming interface, load-balanced utilization of resources, extensibility over the wide area network, and minimal system administration skill requirements. However, all of these environments require some level of access to participating machines to manually distribute the user-defined libraries that the remote call may invoke. Results mGrid augments the usual process distribution seen in other similar distributed systems by adding facilities for user code distribution. mGrid's client-side interface is an easy-to-use native Matlab toolbox that transparently executes user-defined code on remote machines (i.e. the user is unaware that the code is executing somewhere else. Run-time variables are automatically packed and distributed with the user-defined code and automated load-balancing of remote resources enables smooth concurrent execution. mGrid is an open source environment. Apart from the programming language itself, all other components are also open source, freely available tools: light-weight PHP scripts and the Apache web server. Conclusion Transparent, load-balanced distribution of user-defined Matlab toolboxes and rapid prototyping of many simple parallel applications can now be done with a single easy-to-use Matlab command. Because mGrid utilizes only Matlab, light-weight PHP scripts and the Apache web server, installation and configuration are very simple. Moreover, the web-based

  7. Computational mathematics models, methods, and analysis with Matlab and MPI

    CERN Document Server

    White, Robert E

    2004-01-01

    Computational Mathematics: Models, Methods, and Analysis with MATLAB and MPI explores and illustrates this process. Each section of the first six chapters is motivated by a specific application. The author applies a model, selects a numerical method, implements computer simulations, and assesses the ensuing results. These chapters include an abundance of MATLAB code. By studying the code instead of using it as a "black box, " you take the first step toward more sophisticated numerical modeling. The last four chapters focus on multiprocessing algorithms implemented using message passing interface (MPI). These chapters include Fortran 9x codes that illustrate the basic MPI subroutines and revisit the applications of the previous chapters from a parallel implementation perspective. All of the codes are available for download from www4.ncsu.edu./~white.This book is not just about math, not just about computing, and not just about applications, but about all three--in other words, computational science. Whether us...

  8. Integration of Modeling in Solidworks and Matlab/Simulink Environments

    Directory of Open Access Journals (Sweden)

    Cekus Dawid

    2014-03-01

    Full Text Available W pracy opisano tok postepowania podczas budowy modeli symulacyjnych z wykorzystaniem programu SolidWorks i Matlab/Simulink. Tworzenie modelu symulacyjnego przebiega etapami, to znaczy najpierw opracowywany jest model geometryczny w programie SolidWorks, nastepnie dzieki mozliwosci wymiany danych, model CAD jest implementowany w srodowisku obliczeniowym Matlab/Simulink. Modele SimMechanics pozwalaja na sledzenie wielu parametrów, np. trajektorii, predkosci, czy przyspieszen dowolnych elementów układu złozonego. W pracy, jako przykłady modeli symulacyjnych opracowanych zgodnie z zaprezentowana metoda, pokazano modele laboratoryjnego zurawia samochodowego oraz zurawia lesnego. Modele te umozliwiaja wizualizacje zadanego - za pomoca wymuszen kinematycznych - cyklu pracy.

  9. Calcolo scientifico esercizi e problemi risolti con Matlab e Octave

    CERN Document Server

    Quarteroni, Alfio; Gervasio, Paola

    2017-01-01

    Questo testo è concepito per i corsi delle Facoltà di Ingegneria e di Scienze. Esso affronta tutti gli argomenti tipici della Matematica Numerica, spaziando dal problema di risolvere sistemi di equazioni lineari e non lineari a quello di approssimare una funzione, di calcolare i suoi minimi, le sue derivate ed il suo integrale definito fino alla risoluzione di equazioni differenziali ordinarie e alle derivate parziali con metodi alle differenze finite ed agli elementi finiti. Un capitolo iniziale conduce lo studente ad un rapido ripasso degli argomenti dell'Analisi Matematica e dell'Algebra Lineare di uso frequente nel volume e ad una introduzione ai linguaggi MATLAB e Octave. Al fine di rendere maggiormente incisiva la presentazione e fornire un riscontro quantitativo immediato alla teoria vengono implementati in linguaggio MATLAB e Octave tutti gli algoritmi che via via si introducono. Vengono inoltre proposti numerosi esercizi, tutti risolti per esteso, ed esempi, anche con riferimento ad applicazioni in...

  10. AIR Tools - A MATLAB package of algebraic iterative reconstruction methods

    DEFF Research Database (Denmark)

    Hansen, Per Christian; Saxild-Hansen, Maria

    2012-01-01

    We present a MATLAB package with implementations of several algebraic iterative reconstruction methods for discretizations of inverse problems. These so-called row action methods rely on semi-convergence for achieving the necessary regularization of the problem. Two classes of methods are impleme......We present a MATLAB package with implementations of several algebraic iterative reconstruction methods for discretizations of inverse problems. These so-called row action methods rely on semi-convergence for achieving the necessary regularization of the problem. Two classes of methods...... are implemented: Algebraic Reconstruction Techniques (ART) and Simultaneous Iterative Reconstruction Techniques (SIRT). In addition we provide a few simplified test problems from medical and seismic tomography. For each iterative method, a number of strategies are available for choosing the relaxation parameter...

  11. MATLAB/SIMULINK model of CANDU reactor for control studies

    International Nuclear Information System (INIS)

    Javidnia, H.; Jiang, J.

    2006-01-01

    In this paper a MATLAB/SIMULINK model is developed for a CANDU type reactor. The data for the reactor are taken from an Indian PHWR, which is very similar to CANDU in its design. Among the different feedback mechanisms in the core of the reactor, only xenon has been considered which plays an important role in spatial oscillations. The model is verified under closed loop scenarios with simple PI controller. The results of the simulation show that this model can be used for controller design and simulation of the reactor systems. Adding models of the other components of a CANDU reactor would ultimately result in a complete model of CANDU plant in MATLAB/SIMULINK. (author)

  12. RAVEN: a GUI and an Artificial Intelligence Engine in a Dynamic PRA Framework

    Energy Technology Data Exchange (ETDEWEB)

    C. Rabiti; D. Mandelli; A. Alfonsi; J. Cogliati; R. Kinoshita; D. Gaston; R. Martineau; C. Curtis

    2013-06-01

    Increases in computational power and pressure for more accurate simulations and estimations of accident scenario consequences are driving the need for Dynamic Probabilistic Risk Assessment (PRA) [1] of very complex models. While more sophisticated algorithms and computational power address the back end of this challenge, the front end is still handled by engineers that need to extract meaningful information from the large amount of data and build these complex models. Compounding this problem is the difficulty in knowledge transfer and retention, and the increasing speed of software development. The above-described issues would have negatively impacted deployment of the new high fidelity plant simulator RELAP-7 (Reactor Excursion and Leak Analysis Program) at Idaho National Laboratory. Therefore, RAVEN that was initially focused to be the plant controller for RELAP-7 will help mitigate future RELAP-7 software engineering risks. In order to accomplish this task, Reactor Analysis and Virtual Control Environment (RAVEN) has been designed to provide an easy to use Graphical User Interface (GUI) for building plant models and to leverage artificial intelligence algorithms in order to reduce computational time, improve results, and help the user to identify the behavioral pattern of the Nuclear Power Plants (NPPs). In this paper we will present the GUI implementation and its current capability status. We will also introduce the support vector machine algorithms and show our evaluation of their potentiality in increasing the accuracy and reducing the computational costs of PRA analysis. In this evaluation we will refer to preliminary studies performed under the Risk Informed Safety Margins Characterization (RISMC) project of the Light Water Reactors Sustainability (LWRS) campaign [3]. RISMC simulation needs and algorithm testing are currently used as a guidance to prioritize RAVEN developments relevant to PRA.

  13. Processing of hyperspectral medical images applications in dermatology using Matlab

    CERN Document Server

    Koprowski, Robert

    2017-01-01

    This book presents new methods of analyzing and processing hyperspectral medical images, which can be used in diagnostics, for example for dermatological images. The algorithms proposed are fully automatic and the results obtained are fully reproducible. Their operation was tested on a set of several thousands of hyperspectral images and they were implemented in Matlab. The presented source code can be used without licensing restrictions. This is a valuable resource for computer scientists, bioengineers, doctoral students, and dermatologists interested in contemporary analysis methods.

  14. Online design of Matlab/Simulink block schemes

    Directory of Open Access Journals (Sweden)

    Zoltán Janík

    2011-04-01

    Full Text Available The paper presents a new online tool that enables to build a Matlab/Simulink block scheme in the Internet environment. The block scheme can be designed in similar manner as it is offered by local installation of Simulink. The application was created by widely used technologies as XHTML, CSS, JavaScript, PHP together with AJAX approach. The created application can be used as a supporting tool in virtual and remote laboratories.

  15. AIR Tools - A MATLAB Package of Algebraic Iterative Reconstruction Techniques

    DEFF Research Database (Denmark)

    Hansen, Per Christian; Saxild-Hansen, Maria

    This collection of MATLAB software contains implementations of several Algebraic Iterative Reconstruction methods for discretizations of inverse problems. These so-called row action methods rely on semi-convergence for achieving the necessary regularization of the problem. Two classes of methods...... are implemented: Algebraic Reconstruction Techniques (ART) and Simultaneous Iterative Reconstruction Techniques (SIRT). In addition we provide a few simplified test problems from medical and seismic tomography. For each iterative method, a number of strategies are available for choosing the relaxation parameter...

  16. Applied Statistics Using SPSS, STATISTICA, MATLAB and R

    CERN Document Server

    De Sá, Joaquim P Marques

    2007-01-01

    This practical reference provides a comprehensive introduction and tutorial on the main statistical analysis topics, demonstrating their solution with the most common software package. Intended for anyone needing to apply statistical analysis to a large variety of science and enigineering problems, the book explains and shows how to use SPSS, MATLAB, STATISTICA and R for analysis such as data description, statistical inference, classification and regression, factor analysis, survival data and directional statistics. It concisely explains key concepts and methods, illustrated by practical examp

  17. Model of a photovoltaic panel emulator in MATLAB-Simulink

    OpenAIRE

    CAN, Hayrettin

    2014-01-01

    Being able to behave electrically similar to photovoltaic (PV) panels, PV emulator systems make it possible to perform different PV system tests under various operation conditions. In this paper, a model of a PV panel emulator is presented using the Power System Blockset under MATLAB-Simulink. The simulation of the emulator system is developed for testing a controller prior to a real-time implementation. The model can handle the dependence of all of the parameters in the model with ...

  18. Matlab implementation of LASSO, LARS, the elastic net and SPCA

    DEFF Research Database (Denmark)

    2005-01-01

    There are a number of interesting variable selection methods available beside the regular forward selection and stepwise selection methods. Such approaches include LASSO (Least Absolute Shrinkage and Selection Operator), least angle regression (LARS) and elastic net (LARS-EN) regression. There al...... exists a method for calculating principal components with sparse loadings. This software package contains Matlab implementations of these functions. The standard implementations of these functions are available as add-on packages in S-Plus and R....

  19. Simulasi Teknik Modulasi Ofdm Qpsk Dengan Menggunakan Matlab

    OpenAIRE

    Subrata, Rosalia H; Gozali, Ferrianto

    2015-01-01

    This paper provides a brief explanation of the processing steps involved in Orthogonal Frequency Division Multiplexing (OFDM) with Quadrature Phase Shift Keying (QPSK) modulation technique implemented as a simulation program in MatLab. Input data of the simulation program in the form of random bit stream or text can be selected by users. The process conducted in the simulation is divided into three consecutive steps, processes in the OFDM transmitter, in transmission channel and in the OFDM r...

  20. Nonlinear distortion in wireless systems modeling and simulation with Matlab

    CERN Document Server

    Gharaibeh, Khaled M

    2011-01-01

    This book covers the principles of modeling and simulation of nonlinear distortion in wireless communication systems with MATLAB simulations and techniques In this book, the author describes the principles of modeling and simulation of nonlinear distortion in single and multichannel wireless communication systems using both deterministic and stochastic signals. Models and simulation methods of nonlinear amplifiers explain in detail how to analyze and evaluate the performance of data communication links under nonlinear amplification. The book addresses the analysis of nonlinear systems

  1. Nuclear GUI: a Graphical User Interface for 3D discrete ordinates neutral particle transport codes in the doors and BOT3P packages

    International Nuclear Information System (INIS)

    Saintagne, P.W.; Azmy, Y.Y.

    2005-01-01

    A GUI (Graphical User Interface) provides a graphical, interactive and intuitive link between the user and the software. It translates the user'actions into information, e.g; input data that is interpretable by the software. In order to develop an efficient GUI, it is important to master the target computational code. An initial version of a complete GUI for the DOORS and BOT3P packages for solving neutral particle transport problems in 3-dimensional geometry has been completed. This GUI is made of 4 components. The first component GipGui aims at handling cross-sections by mixing microscopic cross-sections from different libraries. The second component TORT-GUI provides the user a simple way to create or modify input files for the TORT codes that is a general purpose neutral transport code able to solve large problems with complex configurations. The third component GGTM-GUI prepares the data describing the problem configuration like the geometrical data, material assignment or key flux positions. The fourth component DTM3-GUI helps the user to visualize TORT results by providing data for a graphics post-processor

  2. Matlab enhanced multi-threaded tomography optimization sequence (MEMTOS)

    International Nuclear Information System (INIS)

    Lum, Edward S.; Pope, Chad L.

    2016-01-01

    Highlights: • Monte Carlo simulation of spent nuclear fuel assembly neutron computed tomography. • Optimized parallel calculations conducted from within the MATLAB environment. • Projection difference technique used to identify anomalies in spent nuclear fuel assemblies. - Abstract: One challenge associated with spent nuclear fuel assemblies is the lack of non-destructive analysis techniques to determine if fuel pins have been removed or replaced or if there are significant defects associated with fuel pins deep within a fuel assembly. Neutron computed tomography is a promising technique for addressing these qualitative issues. Monte Carlo simulation of spent nuclear fuel neutron computed tomography allows inexpensive process investigation and optimization. The main purpose of this work is to provide a fully automated advanced simulation framework for the analysis of spent nuclear fuel inspection using neutron computed tomography. The simulation framework, called Matlab Enhanced Multi-Threaded Tomography Optimization Sequence (MEMTOS) not only automates the simulation process, but also generates superior tomography image results. MEMTOS is written in the MATLAB scripting language and addresses file management, parallel Monte Carlo execution, results extraction, and tomography image generation. This paper describes the mathematical basis for neutron computed tomography, the Monte Carlo technique used to simulate neutron computed tomography, and the overall tomography simulation optimization algorithm. Sequence results presented include overall simulation speed enhancement, tomography and image results obtained for Experimental Breeder Reactor II spent fuel assemblies and light water reactor fuel assemblies. Optimization using a projection difference technique are also described.

  3. A Collection of Nonlinear Aircraft Simulations in MATLAB

    Science.gov (United States)

    Garza, Frederico R.; Morelli, Eugene A.

    2003-01-01

    Nonlinear six degree-of-freedom simulations for a variety of aircraft were created using MATLAB. Data for aircraft geometry, aerodynamic characteristics, mass / inertia properties, and engine characteristics were obtained from open literature publications documenting wind tunnel experiments and flight tests. Each nonlinear simulation was implemented within a common framework in MATLAB, and includes an interface with another commercially-available program to read pilot inputs and produce a three-dimensional (3-D) display of the simulated airplane motion. Aircraft simulations include the General Dynamics F-16 Fighting Falcon, Convair F-106B Delta Dart, Grumman F-14 Tomcat, McDonnell Douglas F-4 Phantom, NASA Langley Free-Flying Aircraft for Sub-scale Experimental Research (FASER), NASA HL-20 Lifting Body, NASA / DARPA X-31 Enhanced Fighter Maneuverability Demonstrator, and the Vought A-7 Corsair II. All nonlinear simulations and 3-D displays run in real time in response to pilot inputs, using contemporary desktop personal computer hardware. The simulations can also be run in batch mode. Each nonlinear simulation includes the full nonlinear dynamics of the bare airframe, with a scaled direct connection from pilot inputs to control surface deflections to provide adequate pilot control. Since all the nonlinear simulations are implemented entirely in MATLAB, user-defined control laws can be added in a straightforward fashion, and the simulations are portable across various computing platforms. Routines for trim, linearization, and numerical integration are included. The general nonlinear simulation framework and the specifics for each particular aircraft are documented.

  4. DSISoft—a MATLAB VSP data processing package

    Science.gov (United States)

    Beaty, K. S.; Perron, G.; Kay, I.; Adam, E.

    2002-05-01

    DSISoft is a public domain vertical seismic profile processing software package developed at the Geological Survey of Canada. DSISoft runs under MATLAB version 5.0 and above and hence is portable between computer operating systems supported by MATLAB (i.e. Unix, Windows, Macintosh, Linux). The package includes processing modules for reading and writing various standard seismic data formats, performing data editing, sorting, filtering, and other basic processing modules. The processing sequence can be scripted allowing batch processing and easy documentation. A structured format has been developed to ensure future additions to the package are compatible with existing modules. Interactive modules have been created using MATLAB's graphical user interface builder for displaying seismic data, picking first break times, examining frequency spectra, doing f- k filtering, and plotting the trace header information. DSISoft modular design facilitates the incorporation of new processing algorithms as they are developed. This paper gives an overview of the scope of the software and serves as a guide for the addition of new modules.

  5. Tkinter GUI application development blueprints build nine projects by working with widgets, geometry management, event handling, and more

    CERN Document Server

    Chaudhary, Bhaskar

    2018-01-01

    Tkinter is the built-in GUI package that comes with standard Python distributions. It is a cross-platform package, which means you build once and deploy everywhere. It is simple to use and intuitive in nature, making it suitable for learners. This book will enable you to use Tkinter effectively through working on nine versatile projects.

  6. The Dynamo package for tomography and subtomogram averaging: components for MATLAB, GPU computing and EC2 Amazon Web Services.

    Science.gov (United States)

    Castaño-Díez, Daniel

    2017-06-01

    Dynamo is a package for the processing of tomographic data. As a tool for subtomogram averaging, it includes different alignment and classification strategies. Furthermore, its data-management module allows experiments to be organized in groups of tomograms, while offering specialized three-dimensional tomographic browsers that facilitate visualization, location of regions of interest, modelling and particle extraction in complex geometries. Here, a technical description of the package is presented, focusing on its diverse strategies for optimizing computing performance. Dynamo is built upon mbtools (middle layer toolbox), a general-purpose MATLAB library for object-oriented scientific programming specifically developed to underpin Dynamo but usable as an independent tool. Its structure intertwines a flexible MATLAB codebase with precompiled C++ functions that carry the burden of numerically intensive operations. The package can be delivered as a precompiled standalone ready for execution without a MATLAB license. Multicore parallelization on a single node is directly inherited from the high-level parallelization engine provided for MATLAB, automatically imparting a balanced workload among the threads in computationally intense tasks such as alignment and classification, but also in logistic-oriented tasks such as tomogram binning and particle extraction. Dynamo supports the use of graphical processing units (GPUs), yielding considerable speedup factors both for native Dynamo procedures (such as the numerically intensive subtomogram alignment) and procedures defined by the user through its MATLAB-based GPU library for three-dimensional operations. Cloud-based virtual computing environments supplied with a pre-installed version of Dynamo can be publicly accessed through the Amazon Elastic Compute Cloud (EC2), enabling users to rent GPU computing time on a pay-as-you-go basis, thus avoiding upfront investments in hardware and longterm software maintenance.

  7. A Review On Linear Programming Analysis Of The Outsourcing Problem Using MATLAB

    Directory of Open Access Journals (Sweden)

    FLt Lt Dinesh Kumar Gupta Retd.

    2015-08-01

    Full Text Available Abstract This study examines the case where market demand exceeds the companys capacity to manufacture. Manufacturing companies often function in situations where internal production resources constrain their throughput. Such situations are characterized as the problem of finite capacity scheduling. Management policy is to meet all demand in order to prevent competitor from entering the field. Now if management needs to decide what quantities of each product to manufacture and what quantities to buy from external contractors. In this study we have described two methodologies based on LP analysis to solve production outsourcing problem using latest version of MATLAB. We choose the best methodology which gives us maximum profits.

  8. Optimal service using Matlab - simulink controlled Queuing system at call centers

    Science.gov (United States)

    Balaji, N.; Siva, E. P.; Chandrasekaran, A. D.; Tamilazhagan, V.

    2018-04-01

    This paper presents graphical integrated model based academic research on telephone call centres. This paper introduces an important feature of impatient customers and abandonments in the queue system. However the modern call centre is a complex socio-technical system. Queuing theory has now become a suitable application in the telecom industry to provide better online services. Through this Matlab-simulink multi queuing structured models provide better solutions in complex situations at call centres. Service performance measures analyzed at optimal level through Simulink queuing model.

  9. A Compilation of MATLAB Scripts and Functions for MACGMC Analyses

    Science.gov (United States)

    Murthy, Pappu L. N.; Bednarcyk, Brett A.; Mital, Subodh K.

    2017-01-01

    The primary aim of the current effort is to provide scripts that automate many of the repetitive pre- and post-processing tasks associated with composite materials analyses using the Micromechanics Analysis Code with the Generalized Method of Cells. This document consists of a compilation of hundreds of scripts that were developed in MATLAB (The Mathworks, Inc., Natick, MA) programming language and consolidated into 16 MATLAB functions. (MACGMC). MACGMC is a composite material and laminate analysis software code developed at NASA Glenn Research Center. The software package has been built around the generalized method of cells (GMC) family of micromechanics theories. The computer code is developed with a user-friendly framework, along with a library of local inelastic, damage, and failure models. Further, application of simulated thermo-mechanical loading, generation of output results, and selection of architectures to represent the composite material have been automated to increase the user friendliness, as well as to make it more robust in terms of input preparation and code execution. Finally, classical lamination theory has been implemented within the software, wherein GMC is used to model the composite material response of each ply. Thus, the full range of GMC composite material capabilities is available for analysis of arbitrary laminate configurations as well. The pre-processing tasks include generation of a multitude of different repeating unit cells (RUCs) for CMCs and PMCs, visualization of RUCs from MACGMC input and output files and generation of the RUC section of a MACGMC input file. The post-processing tasks include visualization of the predicted composite response, such as local stress and strain contours, damage initiation and progression, stress-strain behavior, and fatigue response. In addition to the above, several miscellaneous scripts have been developed that can be used to perform repeated Monte-Carlo simulations to enable probabilistic

  10. Role of Bone Morphogenetic Proteins-7 (BMP-7 in the Renal Improvement Effect of DangGui (Angelica sinensis in Type-1 Diabetic Rats

    Directory of Open Access Journals (Sweden)

    Ching-Hua Yeh

    2011-01-01

    Full Text Available Hyperglycemia induced reactive oxygen species (ROS generation is believed as major factors leading to diabetic nephropathy (DN. DangGui (Angelica sinensis is mentioned to show renal protective effect in combination with other herbs. Bone morphogenetic proteins-7 (BMP-7 is produced merit in protection of DN. The role of BMP-7 in DangGui-induced renal improvement is not clear. The present study investigated the effects of DangGui on renal functions, BMP-7 expression and the levels of ROS in streptozotocin (STZ-induced diabetic rats and high glucose-exposed rat mesangial cells (RMCs. After 1- or 4-week treatment, DangGui improved renal functions and increased renal BMP-7 expression in diabetic rats. The BMP-7 expression in RMCs was reduced by high glucose treatment and this could be reversed by DangGui. Moreover, RMCs exposed to high glucose were expired by BMP-7 RNAi transfection but those cells remained alive by scramble transfection. Thus, we employed regular RMCs to knock down BMP-7 with RNAi and we found that DangGui increased BMP-7 expression in these RMCs. Direct activation of BMP-7 expression by DangGui could be considered. The results of DPPH assay, DHE stain and lucigenin assay indicated that DangGui could inhibit high glucose-induced ROS in RMCs. These results suggest that DangGui has an ability to improve renal functions in STZ-diabetic rats through increasing endogenous BMP-7 expression and decreasing oxidative stress in kidney. The present study suggest that DangGui could be applied to improve renal functions in diabetic disorders.

  11. Control-oriented Automatic System for Transport Analysis (ASTRA)-Matlab integration for Tokamaks

    International Nuclear Information System (INIS)

    Sevillano, M.G.; Garrido, I.; Garrido, A.J.

    2011-01-01

    The exponential growth in energy consumption has led to a renewed interest in the development of alternatives to fossil fuels. Between the unconventional resources that may help to meet this energy demand, nuclear fusion has arisen as a promising source, which has given way to an unprecedented interest in solving the different control problems existing in nuclear fusion reactors such as Tokamaks. The aim of this manuscript is to show how one of the most popular codes used to simulate the performance of Tokamaks, the Automatic System For Transport Analysis (ASTRA) code, can be integrated into the Matlab-Simulink tool in order to make easier and more comfortable the development of suitable controllers for Tokamaks. As a demonstrative case study to show the feasibility and the goodness of the proposed ASTRA-Matlab integration, a modified anti-windup Proportional Integral Derivative (PID)-based controller for the loop voltage of a Tokamak has been implemented. The integration achieved represents an original and innovative work in the Tokamak control area and it provides new possibilities for the development and application of advanced control schemes to the standardized and widely extended ASTRA transport code for Tokamaks. -- Highlights: → The paper presents a useful tool for rapid prototyping of different solutions to deal with the control problems arising in Tokamaks. → The proposed tool embeds the standardized Automatic System For Transport Analysis (ASTRA) code for Tokamaks within the well-known Matlab-Simulink software. → This allows testing and combining diverse control schemes in a unified way considering the ASTRA as the plant of the system. → A demonstrative Proportional Integral Derivative (PID)-based case study is provided to show the feasibility and capabilities of the proposed integration.

  12. IMAGE PROCESSING BASED OPTICAL CHARACTER RECOGNITION USING MATLAB

    OpenAIRE

    Jyoti Dalal*1 & Sumiran Daiya2

    2018-01-01

    Character recognition techniques associate a symbolic identity with the image of character. In a typical OCR systems input characters are digitized by an optical scanner. Each character is then located and segmented, and the resulting character image is fed into a pre-processor for noise reduction and normalization. Certain characteristics are the extracted from the character for classification. The feature extraction is critical and many different techniques exist, each having its strengths ...

  13. MATLAB-Based Teaching Modules in Biochemical Engineering

    Science.gov (United States)

    Lee, Kilho; Comolli, Noelle K.; Kelly, William J.; Huang, Zuyi

    2015-01-01

    Mathematical models play an important role in biochemical engineering. For example, the models developed in the field of systems biology have been used to identify drug targets to treat pathogens such as Pseudomonas aeruginosa in biofilms. In addition, competitive binding models for chromatography processes have been developed to predict expanded…

  14. Development of Airport Noise Mapping using Matlab Software (Case Study: Adi Soemarmo Airport - Boyolali, Indonesia)

    Science.gov (United States)

    Andarani, Pertiwi; Setiyo Huboyo, Haryono; Setyanti, Diny; Budiawan, Wiwik

    2018-02-01

    Noise is considered as one of the main environmental impact of Adi Soemarmo International Airport (ASIA), the second largest airport in Central Java Province, Indonesia. In order to manage the noise of airport, airport noise mapping is necessary. However, a model that requires simple input but still reliable was not available in ASIA. Therefore, the objective of this study are to develop model using Matlab software, to verify its reliability by measuring actual noise exposure, and to analyze the area of noise levels‥ The model was developed based on interpolation or extrapolation of identified Noise-Power-Distance (NPD) data. In accordance with Indonesian Government Ordinance No.40/2012, the noise metric used is WECPNL (Weighted Equivalent Continuous Perceived Noise Level). Based on this model simulation, there are residence area in the region of noise level II (1.912 km2) and III (1.16 km2) and 18 school buildings in the area of noise levels I, II, and III. These land-uses are actually prohibited unless noise insulation is equipped. The model using Matlab in the case of Adi Soemarmo International Airport is valid based on comparison of the field measurement (6 sampling points). However, it is important to validate the model again once the case study (the airport) is changed.

  15. Construction of multi-functional open modulized Matlab simulation toolbox for imaging ladar system

    Science.gov (United States)

    Wu, Long; Zhao, Yuan; Tang, Meng; He, Jiang; Zhang, Yong

    2011-06-01

    Ladar system simulation is to simulate the ladar models using computer simulation technology in order to predict the performance of the ladar system. This paper presents the developments of laser imaging radar simulation for domestic and overseas studies and the studies of computer simulation on ladar system with different application requests. The LadarSim and FOI-LadarSIM simulation facilities of Utah State University and Swedish Defence Research Agency are introduced in details. This paper presents the low level of simulation scale, un-unified design and applications of domestic researches in imaging ladar system simulation, which are mostly to achieve simple function simulation based on ranging equations for ladar systems. Design of laser imaging radar simulation with open and modularized structure is proposed to design unified modules for ladar system, laser emitter, atmosphere models, target models, signal receiver, parameters setting and system controller. Unified Matlab toolbox and standard control modules have been built with regulated input and output of the functions, and the communication protocols between hardware modules. A simulation based on ICCD gain-modulated imaging ladar system for a space shuttle is made based on the toolbox. The simulation result shows that the models and parameter settings of the Matlab toolbox are able to simulate the actual detection process precisely. The unified control module and pre-defined parameter settings simplify the simulation of imaging ladar detection. Its open structures enable the toolbox to be modified for specialized requests. The modulization gives simulations flexibility.

  16. Hidden markov model for the prediction of transmembrane proteins using MATLAB.

    Science.gov (United States)

    Chaturvedi, Navaneet; Shanker, Sudhanshu; Singh, Vinay Kumar; Sinha, Dhiraj; Pandey, Paras Nath

    2011-01-01

    Since membranous proteins play a key role in drug targeting therefore transmembrane proteins prediction is active and challenging area of biological sciences. Location based prediction of transmembrane proteins are significant for functional annotation of protein sequences. Hidden markov model based method was widely applied for transmembrane topology prediction. Here we have presented a revised and a better understanding model than an existing one for transmembrane protein prediction. Scripting on MATLAB was built and compiled for parameter estimation of model and applied this model on amino acid sequence to know the transmembrane and its adjacent locations. Estimated model of transmembrane topology was based on TMHMM model architecture. Only 7 super states are defined in the given dataset, which were converted to 96 states on the basis of their length in sequence. Accuracy of the prediction of model was observed about 74 %, is a good enough in the area of transmembrane topology prediction. Therefore we have concluded the hidden markov model plays crucial role in transmembrane helices prediction on MATLAB platform and it could also be useful for drug discovery strategy. The database is available for free at bioinfonavneet@gmail.comvinaysingh@bhu.ac.in.

  17. EEGVIS: A MATLAB toolbox for browsing, exploring, and viewing large datasets

    Directory of Open Access Journals (Sweden)

    Kay A Robbins

    2012-05-01

    Full Text Available Recent advances in data monitoring and sensor technology have accelerated the acquisition of very large data sets. Streaming data sets from instrumentation such as multi-channel EEG recording usually must undergo substantial pre-processing and artifact removal. Even when using automated procedures, most scientists engage in laborious manual examination and processing to assure high quality data and to indentify interesting or problematic data segments. Researchers also do not have a convenient method of method of visually assessing the effects of applying any stage in a processing pipeline. EEGVIS is a MATLAB toolbox that allows users to quickly explore multi-channel EEG and other large array-based data sets using multi-scale drill-down techniques. Customizable summary views reveal potentially interesting sections of data, which users can explore further by clicking to examine using detailed viewing components. The viewer and a companion browser are built on our MoBBED framework, which has a library of modular viewing components that can be mixed and matched to best reveal structure. Users can easily create new viewers for their specific data without any programming during the exploration process. These viewers automatically support pan, zoom, resizing of individual components, and cursor exploration. The toolbox can be used directly in MATLAB at any stage in a processing pipeline, as a plug in for EEGLAB, or as a standalone precompiled application without MATLAB running. EEGVIS and its supporting packages are freely available under the GNU general public license at http://visual.cs.utsa.edu/ eegvis.

  18. A Series of MATLAB Learning Modules to Enhance Numerical Competency in Applied Marine Sciences

    Science.gov (United States)

    Fischer, A. M.; Lucieer, V.; Burke, C.

    2016-12-01

    Enhanced numerical competency to navigate the massive data landscapes are critical skills students need to effectively explore, analyse and visualize complex patterns in high-dimensional data for addressing the complexity of many of the world's problems. This is especially the case for interdisciplinary, undergraduate applied marine science programs, where students are required to demonstrate competency in methods and ideas across multiple disciplines. In response to this challenge, we have developed a series of repository-based data exploration, analysis and visualization modules in MATLAB for integration across various attending and online classes within the University of Tasmania. The primary focus of these modules is to teach students to collect, aggregate and interpret data from large on-line marine scientific data repositories to, 1) gain technical skills in discovering, accessing, managing and visualising large, numerous data sources, 2) interpret, analyse and design approaches to visualise these data, and 3) to address, through numerical approaches, complex, real-world problems, that the traditional scientific methods cannot address. All modules, implemented through a MATLAB live script, include a short recorded lecture to introduce the topic, a handout that gives an overview of the activities, an instructor's manual with a detailed methodology and discussion points, a student assessment (quiz and level-specific challenge task), and a survey. The marine science themes addressed through these modules include biodiversity, habitat mapping, algal blooms and sea surface temperature change and utilize a series of marine science and oceanographic data portals. Through these modules students, with minimal experience in MATLAB or numerical methods are introduced to array indexing, concatenation, sorting, and reshaping, principal component analysis, spectral analysis and unsupervised classification within the context of oceanographic processes, marine geology and

  19. Edge detection and mathematic fitting for corneal surface with Matlab software.

    Science.gov (United States)

    Di, Yue; Li, Mei-Yan; Qiao, Tong; Lu, Na

    2017-01-01

    To select the optimal edge detection methods to identify the corneal surface, and compare three fitting curve equations with Matlab software. Fifteen subjects were recruited. The corneal images from optical coherence tomography (OCT) were imported into Matlab software. Five edge detection methods (Canny, Log, Prewitt, Roberts, Sobel) were used to identify the corneal surface. Then two manual identifying methods (ginput and getpts) were applied to identify the edge coordinates respectively. The differences among these methods were compared. Binomial curve (y=Ax 2 +Bx+C), Polynomial curve [p(x)=p1x n +p2x n-1 +....+pnx+pn+1] and Conic section (Ax 2 +Bxy+Cy 2 +Dx+Ey+F=0) were used for curve fitting the corneal surface respectively. The relative merits among three fitting curves were analyzed. Finally, the eccentricity (e) obtained by corneal topography and conic section were compared with paired t -test. Five edge detection algorithms all had continuous coordinates which indicated the edge of the corneal surface. The ordinates of manual identifying were close to the inside of the actual edges. Binomial curve was greatly affected by tilt angle. Polynomial curve was lack of geometrical properties and unstable. Conic section could calculate the tilted symmetry axis, eccentricity, circle center, etc . There were no significant differences between 'e' values by corneal topography and conic section ( t =0.9143, P =0.3760 >0.05). It is feasible to simulate the corneal surface with mathematical curve with Matlab software. Edge detection has better repeatability and higher efficiency. The manual identifying approach is an indispensable complement for detection. Polynomial and conic section are both the alternative methods for corneal curve fitting. Conic curve was the optimal choice based on the specific geometrical properties.

  20. EEGVIS: A MATLAB Toolbox for Browsing, Exploring, and Viewing Large Datasets.

    Science.gov (United States)

    Robbins, Kay A

    2012-01-01

    Recent advances in data monitoring and sensor technology have accelerated the acquisition of very large data sets. Streaming data sets from instrumentation such as multi-channel EEG recording usually must undergo substantial pre-processing and artifact removal. Even when using automated procedures, most scientists engage in laborious manual examination and processing to assure high quality data and to indentify interesting or problematic data segments. Researchers also do not have a convenient method of method of visually assessing the effects of applying any stage in a processing pipeline. EEGVIS is a MATLAB toolbox that allows users to quickly explore multi-channel EEG and other large array-based data sets using multi-scale drill-down techniques. Customizable summary views reveal potentially interesting sections of data, which users can explore further by clicking to examine using detailed viewing components. The viewer and a companion browser are built on our MoBBED framework, which has a library of modular viewing components that can be mixed and matched to best reveal structure. Users can easily create new viewers for their specific data without any programming during the exploration process. These viewers automatically support pan, zoom, resizing of individual components, and cursor exploration. The toolbox can be used directly in MATLAB at any stage in a processing pipeline, as a plug-in for EEGLAB, or as a standalone precompiled application without MATLAB running. EEGVIS and its supporting packages are freely available under the GNU general public license at http://visual.cs.utsa.edu/eegvis.

  1. Web based educational tool for neural network robot control

    Directory of Open Access Journals (Sweden)

    Jure Čas

    2007-05-01

    Full Text Available Abstract— This paper describes the application for teleoperations of the SCARA robot via the internet. The SCARA robot is used by students of mehatronics at the University of Maribor as a remote educational tool. The developed software consists of two parts i.e. the continuous neural network sliding mode controller (CNNSMC and the graphical user interface (GUI. Application is based on two well-known commercially available software packages i.e. MATLAB/Simulink and LabVIEW. Matlab/Simulink and the DSP2 Library for Simulink are used for control algorithm development, simulation and executable code generation. While this code is executing on the DSP-2 Roby controller and through the analog and digital I/O lines drives the real process, LabVIEW virtual instrument (VI, running on the PC, is used as a user front end. LabVIEW VI provides the ability for on-line parameter tuning, signal monitoring, on-line analysis and via Remote Panels technology also teleoperation. The main advantage of a CNNSMC is the exploitation of its self-learning capability. When friction or an unexpected impediment occurs for example, the user of a remote application has no information about any changed robot dynamic and thus is unable to dispatch it manually. This is not a control problem anymore because, when a CNNSMC is used, any approximation of changed robot dynamic is estimated independently of the remote’s user. Index Terms—LabVIEW; Matlab/Simulink; Neural network control; remote educational tool; robotics

  2. PEM fuel cell modeling and simulation using Matlab

    CERN Document Server

    Spiegel, Colleen

    2011-01-01

    Although, the basic concept of a fuel cell is quite simple, creating new designs and optimizing their performance takes serious work and a mastery of several technical areas. PEM Fuel Cell Modeling and Simulation Using Matlab, provides design engineers and researchers with a valuable tool for understanding and overcoming barriers to designing and building the next generation of PEM Fuel Cells. With this book, engineers can test components and verify designs in the development phase, saving both time and money.Easy to read and understand, this book provides design and modelling tips for

  3. Obtención de curvas de residuo con Matlab

    OpenAIRE

    Barrio García-Parra, Marco Bruno del

    2017-01-01

    Los diagramas de curvas de residuo son una herramienta cualitativa que permite una mejor comprensión de los procesos físicos que se dan en la destilación de sistemas multicomponente. Una curva de residuo representa la evolución de la composición de una mezcla líquida según se va evaporando y retirando el vapor producido resultante de la ebullición. En este trabajo se expone la metodología, resultados y conclusiones que han llevado a la obtención de curvas de residuo con Matlab® en sistema...

  4. ADAMS-MATLAB Co-Simulation of A Serial Manipulator

    Directory of Open Access Journals (Sweden)

    Parthasarathy Tejaswin

    2017-01-01

    Full Text Available This paper presents the dynamic modelling and simulation of a now redundant robot, Mitsubishi RM-501, and proposes a general algorithm for experimental simulation in kinematics, dynamics and control analysis to any such robot. Through reverse engineering, a model as accurate as the real robot was developed in SolidWorks.The simulations of the same were performed in ADAMS (dynamicmodeling software offered by MSC Software Corpalong with MATLAB for motion studies and control dynamics. Finally, with a user-input path the accuracy and precision of the simulator was verified.

  5. Development of Integral Environment in Matlab/Simulink for FPGA

    Directory of Open Access Journals (Sweden)

    Dejan Jokic

    2014-01-01

    Full Text Available In this paper is presented realization of integral environment which consists of software and hardware components for the purpose of programming Altera DE boards. Software component is Toolbox FPGA Real Time which enables simple use of Matlab/Simulink with DSP Builder for the purpose of realization of control structures. Hardware component are Interface cards that make connection of DE board with object of control possible. Simulation and experimental results of DC motor control indicate the usefulness of the proposed concept.

  6. Discrete random signal processing and filtering primer with Matlab

    CERN Document Server

    Poularikas, Alexander D

    2013-01-01

    Engineers in all fields will appreciate a practical guide that combines several new effective MATLAB® problem-solving approaches and the very latest in discrete random signal processing and filtering.Numerous Useful Examples, Problems, and Solutions - An Extensive and Powerful ReviewWritten for practicing engineers seeking to strengthen their practical grasp of random signal processing, Discrete Random Signal Processing and Filtering Primer with MATLAB provides the opportunity to doubly enhance their skills. The author, a leading expert in the field of electrical and computer engineering, offe

  7. Image processing tensor transform and discrete tomography with Matlab

    CERN Document Server

    Grigoryan, Artyom M

    2012-01-01

    Focusing on mathematical methods in computer tomography, Image Processing: Tensor Transform and Discrete Tomography with MATLAB(R) introduces novel approaches to help in solving the problem of image reconstruction on the Cartesian lattice. Specifically, it discusses methods of image processing along parallel rays to more quickly and accurately reconstruct images from a finite number of projections, thereby avoiding overradiation of the body during a computed tomography (CT) scan. The book presents several new ideas, concepts, and methods, many of which have not been published elsewhere. New co

  8. Differential equations with Matlab exploration, applications, and theory

    CERN Document Server

    McKibben, Mark

    2014-01-01

    ORDINARY DIFFERENTIAL EQUATIONS Welcome! Introduction This Book Is a Field Guide. What Does That Mean for YOU? Mired in Jargon - A Quick Language Lesson! Introducing MATLAB A First Look at Some Elementary Mathematical Models A Basic Analysis Toolbox Some Basic Mathematical Shorthand Set Algebra Functions The Space (R; j_j) A Closer Look at Sequences in (R; j_j) The Spaces (RN; k_kRN ) and (MN(R); k_kMN(R)Calculus of RN-valued and MN(R)-valued FunctionsSome Elementary ODEs Looking Ahead A First Wave of Mathematical Models Newton's Law of Heating and Cooling-Revisited Pharmocokinetics Uniform Mi

  9. Causes of maternal mortality decline in Matlab, Bangladesh.

    Science.gov (United States)

    Chowdhury, Mahbub Elahi; Ahmed, Anisuddin; Kalim, Nahid; Koblinsky, Marge

    2009-04-01

    Bangladesh is distinct among developing countries in achieving a low maternal mortality ratio (MMR) of 322 per 100,000 livebirths despite the very low use of skilled care at delivery (13% nationally). This variation has also been observed in Matlab, a rural area in Bangladesh, where longitudinal data on maternal mortality are available since the mid-1970s. The current study investigated the possible causes of the maternal mortality decline in Matlab. The study analyzed 769 maternal deaths and 215,779 pregnancy records from the Health and Demographic Surveillance System (HDSS) and other sources of safe motherhood data in the ICDDR,B and government service areas in Matlab during 1976-2005. The major interventions that took place in both the areas since the early 1980s were the family-planning programme plus safe menstrual regulation services and safe motherhood interventions (midwives for normal delivery in the ICDDR,B service area from the late 1980s and equal access to comprehensive emergency obstetric care [EmOC] in public facilities for women from both the areas). National programmes for social development and empowerment of women through education and microcredit programmes were implemented in both the areas. The quantitative findings were supplemented by a qualitative study by interviewing local community care providers for their change in practices for maternal healthcare over time. After the introduction of the safe motherhood programme, reduction in maternal mortality was higher in the ICDDR,B service area (68.6%) than in the government service area (50.4%) during 1986-1989 and 2001-2005. Reduction in the number of maternal deaths due to the fertility decline was higher in the government service area (30%) than in the ICDDR,B service area (23%) during 1979-2005. In each area, there has been substantial reduction in abortion-related mortality--86.7% and 78.3%--in the ICDDR,B and government service areas respectively. Education of women was a strong predictor

  10. Automatic analysis of intrinsic positional verification films brachytherapy using MATLAB

    International Nuclear Information System (INIS)

    Quiros Higueras, J. D.; Marco Blancas, N. de; Ruiz Rodriguez, J. C.

    2011-01-01

    One of the essential tests in quality control of brachytherapy equipment is verification auto load intrinsic positional radioactive source. A classic method for evaluation is the use of x-ray film and measuring the distance between the marks left by autoradiography of the source with respect to a reference. In our center has developed an automated method of measurement by the radiochromic film scanning and implementation of a macro developed in Matlab, in order to optimize time and reduce uncertainty in the measurement. The purpose of this paper is to describe the method developed, assess their uncertainty and quantify their advantages over the manual method. (Author)

  11. Load forecasting using different architectures of neural networks with the assistance of the MATLAB toolboxes; Previsao de cargas eletricas utilizando diferentes arquiteturas de redes neurais artificiais com o auxilio das toolboxes do MATLAB

    Energy Technology Data Exchange (ETDEWEB)

    Nose Filho, Kenji; Araujo, Klayton A.M.; Maeda, Jorge L.Y.; Lotufo, Anna Diva P. [Universidade Estadual Paulista Julio de Mesquita Filho (UNESP), Ilha Solteira, SP (Brazil)], Emails: kenjinose@yahoo.com.br, klayton_ama@hotmail.com, jorge-maeda@hotmail.com, annadiva@dee.feis.unesp.br

    2009-07-01

    This paper presents a development and implementation of a program to electrical load forecasting with data from a Brazilian electrical company, using four different architectures of neural networks of the MATLAB toolboxes: multilayer backpropagation gradient descendent with momentum, multilayer backpropagation Levenberg-Marquardt, adaptive network based fuzzy inference system and general regression neural network. The program presented a satisfactory performance, guaranteeing very good results. (author)

  12. GUI2QAD-3D: A graphical interface program for QAD-CGPIC program

    International Nuclear Information System (INIS)

    Subbaiah, K.V.; Sarangapani, R.

    2006-01-01

    GUI2QAD-3D is graphical user interface developed in Visual Basic (VB) version 6.0 to prepare input for the QAD-CGPIC program. QAD-CGPIC is a FORTRAN code that combines QAD-CGGP (RSICC-CCC-493, USA) and PICTURE [Irving, D.C., Morrison, G.W., 1970. PICTURE-an aid in debugging GEOM input data, ORNL-TM-2892] for neutron and gamma-ray shielding calculations by the point kernel method in a consistent fashion to utilize the capabilities of two independent codes. The FORTRAN code calculates fast neutron and gamma-ray penetration through various shield configurations defined by combinatorial geometry specifications. It has provision to estimate buildup factor either from Geometric Progression (GP) coefficients (ANS-6.4.3, 1990) or from Capos'. Capabilities of the FORTRAN code is extended by modifying it to handle off-centred multiple identical sources. Several standard tests of inputs are carried out to validate the modified code. The FORTRAN code executable is created with a Lahey compiler. The user interface facilitates interactive viewing of the geometry of the system with online context sensitive help. Inputs for several practical problems relating to nuclear fuel reprocessing labs are provided. The software runs on Pentium III computers under windows environment and is transmitted in one CD. The software can be obtained from Radiation Safety Information and Computational Centre (RSICC), ORNL, USA with code package identification number CCC-697

  13. The Immunomodulatory Effect of You-Gui-Wan on Dermatogoides-pteronyssinus-Induced Asthma

    Directory of Open Access Journals (Sweden)

    Li-Jen Lin

    2012-01-01

    Full Text Available The traditional Chinese medicine You-Gui-Wan (YGW contains ten species of medicinal plants and has been used to improve health in remissive states of asthma for hundreds of years in Asia. However, little is known about the immunomodulatory mechanisms in vivo. Therefore, this study investigated the pathologic and immunologic responses to YGW in mice that had been repeatedly exposed to Dermatogoides-pteronyssinus (Der p. YGW reduced Der-p-induced airway hyperresponsiveness and total IgE in serum. It also inhibited eosinophil infiltration by downregulating the protein expression of IL-5 in serum and changed the Th2-bios in BALF by upregulating IL-12. Results of the collagen assay and histopathologic examination showed that YGW reduced airway remodeling in the lung. In addition, after YGW treatment there was a relative decrease in mRNA expression of TGF-β1, IL-13, eotaxin, RANTES, and MCP-1 in lung in the YGW group. The results of EMSA and immunohistochemistry revealed that YGW inhibited NF-κB expression in epithelial lung cells. YGW exerts its regulative effects in chronic allergic asthmatic mice via its anti-inflammatory activity and by inhibiting the progression of airway remodeling.

  14. Digital Signal Processing for Medical Imaging Using Matlab

    CERN Document Server

    Gopi, E S

    2013-01-01

    This book describes medical imaging systems, such as X-ray, Computed tomography, MRI, etc. from the point of view of digital signal processing. Readers will see techniques applied to medical imaging such as Radon transformation, image reconstruction, image rendering, image enhancement and restoration, and more. This book also outlines the physics behind medical imaging required to understand the techniques being described. The presentation is designed to be accessible to beginners who are doing research in DSP for medical imaging. Matlab programs and illustrations are used wherever possible to reinforce the concepts being discussed.  ·         Acts as a “starter kit” for beginners doing research in DSP for medical imaging; ·         Uses Matlab programs and illustrations throughout to make content accessible, particularly with techniques such as Radon transformation and image rendering; ·         Includes discussion of the basic principles behind the various medical imaging tec...

  15. KiT: a MATLAB package for kinetochore tracking.

    Science.gov (United States)

    Armond, Jonathan W; Vladimirou, Elina; McAinsh, Andrew D; Burroughs, Nigel J

    2016-06-15

    During mitosis, chromosomes are attached to the mitotic spindle via large protein complexes called kinetochores. The motion of kinetochores throughout mitosis is intricate and automated quantitative tracking of their motion has already revealed many surprising facets of their behaviour. Here, we present 'KiT' (Kinetochore Tracking)-an easy-to-use, open-source software package for tracking kinetochores from live-cell fluorescent movies. KiT supports 2D, 3D and multi-colour movies, quantification of fluorescence, integrated deconvolution, parallel execution and multiple algorithms for particle localization. KiT is free, open-source software implemented in MATLAB and runs on all MATLAB supported platforms. KiT can be downloaded as a package from http://www.mechanochemistry.org/mcainsh/software.php The source repository is available at https://bitbucket.org/jarmond/kit and under continuing development. Supplementary data are available at Bioinformatics online. jonathan.armond@warwick.ac.uk. © The Author 2016. Published by Oxford University Press.

  16. Solution of the reactor point kinetics equations by MATLAB computing

    Directory of Open Access Journals (Sweden)

    Singh Sudhansu S.

    2015-01-01

    Full Text Available The numerical solution of the point kinetics equations in the presence of Newtonian temperature feedback has been a challenging issue for analyzing the reactor transients. Reactor point kinetics equations are a system of stiff ordinary differential equations which need special numerical treatments. Although a plethora of numerical intricacies have been introduced to solve the point kinetics equations over the years, some of the simple and straightforward methods still work very efficiently with extraordinary accuracy. As an example, it has been shown recently that the fundamental backward Euler finite difference algorithm with its simplicity has proven to be one of the most effective legacy methods. Complementing the back-ward Euler finite difference scheme, the present work demonstrates the application of ordinary differential equation suite available in the MATLAB software package to solve the stiff reactor point kinetics equations with Newtonian temperature feedback effects very effectively by analyzing various classic benchmark cases. Fair accuracy of the results implies the efficient application of MATLAB ordinary differential equation suite for solving the reactor point kinetics equations as an alternate method for future applications.

  17. [Medicine-syndrome research and analysis of professor Li Dian-gui in treating chronic atrophic gastritis with intestinal metaplasia].

    Science.gov (United States)

    Liu, Xiao-Fa; Li, Dian-Gui; Liu, Jian-Ping; Du, Yan-Ru; Bai, Hai-Yan

    2017-05-01

    In this article, medication characteristics of professor Li Dian-gui in treating chronic atrophic gastritis with intestinal metaplasia(CAGIM) were analyzed through traditional Chinese medicine inheritance support system(version 2.5). 276 cases and 625 prescriptions were collected to analyze five types of traditional Chinese medicine(TCM) syndromes and the medicine-syndrome correlation. The results showed that medication characteristics of professor Li Dian-gui in treating CAGIM included drug combination of aromatic medicine bitter-cold herbs, preferring to activating to invigorate the spleen and good at using the qi-regulating drugs. It demonstrated that we can adopt the therapy of Huazhuo Jiedu and Xingpi Xingqi therapies in treating CAGIM in addition to the traditional approach of nourishing Yin and activating blood circulation, opening up a novel approach for TCM in healing the pathema. Copyright© by the Chinese Pharmaceutical Association.

  18. MatLab script to C code converter for embedded processors of FLASH LLRF control system

    Science.gov (United States)

    Bujnowski, K.; Siemionczyk, A.; Pucyk, P.; Szewiński, J.; Pożniak, K. T.; Romaniuk, R. S.

    2008-01-01

    The low level RF control system (LLRF) of FEL serves for stabilization of the electromagnetic (EM) field in the superconducting niobium, resonant, microwave cavities and for controlling high power (MW) klystron. LLRF system of FLASH accelerator bases on FPGA technology and embedded microprocessors. Basic and auxiliary functions of the systems are listed as well as used algorithms for superconductive cavity parameters identification. These algorithms were prepared originally in Matlab. The main part of the paper presents implementation of the cavity parameters identification algorithm in a PowerPC processor embedded in the FPGA circuit VirtexIIPro. A construction of a very compact Matlab script converter to C code was presented, referred to as M2C. The application is designed specifically for embedded systems of very confined resources. The generated code is optimized for the weight. The code should be transferable between different hardware platforms. The converter generates a code for Linux and for stand-alone applications. Functional structure of the program was described and the way it is acting. FLEX and BIZON tools were used for construction of the converter. The paper concludes with an example of the M2C application to convert a complex identification algorithm for superconductive cavities in FLASH laser.

  19. First Steps into Practical Engineering for Freshman Students Using MATLAB and LEGO Mindstorms Robots

    Directory of Open Access Journals (Sweden)

    A. Behrens

    2008-01-01

    Full Text Available Besides lectures on basic theoretical topics, contemporary teaching and learning concepts for first semester students give more and more consideration to practically motivated courses. In this context, a new first-year introductory course in practical engineering has been established in the first semester curriculum of Electrical Engineering at RWTH Aachen University, Germany. Based on a threefold learning concept, programming skills in MATLAB are taught to 309 students within a full-time block course laboratory. The students are encouraged to transfer known mathematical basics to program algorithms and real-world applications performed by 100 LEGO Mindstorms robots. A new MATLAB toolbox and twofold project tasks have been developed for this purpose by a small team of supervisors. The students are supervised by over 60 tutors at 23 institutes, and are encouraged to create their own robotics applications. We describe how the laboratory motivates the students to act and think like engineers and to solve real-world issues with limited resources. The evaluation results show that the proposed practical course concept successfully boosts students’ motivation, advances their programming skills, and encourages the peer learning process. 

  20. STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.

    Science.gov (United States)

    Klingbeil, Guido; Erban, Radek; Giles, Mike; Maini, Philip K

    2011-04-15

    The importance of stochasticity in biological systems is becoming increasingly recognized and the computational cost of biologically realistic stochastic simulations urgently requires development of efficient software. We present a new software tool STOCHSIMGPU that exploits graphics processing units (GPUs) for parallel stochastic simulations of biological/chemical reaction systems and show that significant gains in efficiency can be made. It is integrated into MATLAB and works with the Systems Biology Toolbox 2 (SBTOOLBOX2) for MATLAB. The GPU-based parallel implementation of the Gillespie stochastic simulation algorithm (SSA), the logarithmic direct method (LDM) and the next reaction method (NRM) is approximately 85 times faster than the sequential implementation of the NRM on a central processing unit (CPU). Using our software does not require any changes to the user's models, since it acts as a direct replacement of the stochastic simulation software of the SBTOOLBOX2. The software is open source under the GPL v3 and available at http://www.maths.ox.ac.uk/cmb/STOCHSIMGPU. The web site also contains supplementary information. klingbeil@maths.ox.ac.uk Supplementary data are available at Bioinformatics online.

  1. CMS Configuration Editor: GUI based application for user analysis job definition

    CERN Document Server

    De Cosa, Annapaola

    2010-01-01

    We present the user interface and the software architecture of the Configuration Editor that is used by CMS physicists to configure their physics analysis tasks. Analysis workflows typically involve execution of a sequence of algorithms, and these are implemented as software modules that are integrated within the CMS software framework (CMSSW). In particular, a set of common analysis tools is provided in the so-called CMS Physics Analysis Toolkit (PAT) and these need to be steered and configured during the execution of an analysis job. The Python scripting language is used to define the job configuration that drives the analysis workflow. Configuring analysis jobs can be quite a challenging task, particularly for newcomers, and therefore a graphical tool, called the Configuration Editor, has been developed to facilitate the creation and inspection of these configuration files. Typically, a user-defined analysis workflow can be produced starting from a standard configuration file, applying and configuring PAT ...

  2. PyTRiP - a toolbox and GUI for the proton/ion therapy planning system TRiP

    International Nuclear Information System (INIS)

    Toftegaard, J; Bassler, N; Petersen, J B

    2014-01-01

    Purpose: Only very few treatment planning systems (TPS) are capable of handling heavy ions. Commercial heavy ion TPS are costly and normally restrict the possibility to implement new functionalities. PyTRiP provides Python bindings and a platform-independent graphical user interface (GUI) for the heavy ion treatment program TRiP, and adds seamless support of DICOM files. We aim to provide a front-end for TRiP which does not require any special computer skills. Methods: PyTRiP is written in Python combined with C for fast computing. Routines for DICOM file import/export to TRiPs native file format are implemented. The GUI comes as an executable with all its dependencies including PyTRiP making it easy to install on Windows, Mac and Linux. Results: PyTRiP is a comprehensive toolbox for handling TRiP. Treatment plans are handled using an object oriented structure. Bindings to TRiP (which only runs on Linux, either locally or on a remote server) are performed through a single function call. GUI users can intuitively create treatment plans without much knowledge about the TRiP user interface. Advanced users still have full access to all TRiP functionality. The user interface comes with a comprehensive plotting tool, which can visualize 2D contours, volume histograms, as well as dose- and linear energy transfer (LET) distributions. Conclusion: We developed a powerful toolbox for ion therapy research using TRiP as backend. The corresponding GUI allows to easily and intuitively create, calculate and visualize treatment plans. TRiP is thereby more accessible and simpler to use.

  3. Development of MATLAB Scripts for the Calculation of Thermal Manikin Regional Resistance Values

    Science.gov (United States)

    2016-01-01

    TECHNICAL NOTE NO. TN16-1 DATE January 2016 ADA DEVELOPMENT OF MATLAB ® SCRIPTS FOR THE...USARIEM TECHNICAL NOTE TN16-1 DEVELOPMENT OF MATLAB ® SCRIPTS FOR THE CALCULATION OF THERMAL MANIKIN REGIONAL RESISTANCE VALUES...EXECUTIVE SUMMARY A software tool has been developed via MATLAB ® scripts to reduce the amount of repetitive and time-consuming calculations that are

  4. Efficacy of Chinese patent medicine Tian Gui Capsule in patients with polycystic ovary syndrome: a randomized controlled trial.

    Science.gov (United States)

    Kuek, Susuana; Wang, Wen-jun; Gui, Sui-qi

    2011-09-01

    Polycystic ovary syndrome (PCOS) is a complex hormonal disorder and one of the most common reproductive endocrinology abnormalities in women. Recently, many studies have been conducted assessing Chinese herbal medicine as an alternative treatment for women with PCOS, it is, therefore, worthwhile to analyze and observe the curative effects of traditional Chinese medicine treatment in PCOS. To evaluate the efficacy of the Chinese patent medicine Tian Gui Capsule, in women with PCOS and compare its effects with metformin and ethinyl estradiol plus cyproterone acetate (Diane-35). A total of 47 PCOS outpatients from the Obstetrics and Gynecology Hospital of Fudan University were randomly divided into 3 groups. Patients in group A (n=19) were given Tian Gui Capsule, patients in group B (n=17) were given metformin, and patients in group C (n=11) were given Diane-35. The 3 groups of patients were treated for 3 months. Serum testosterone (T), sex hormone binding globulin (SHBG) and dehydroepiandrosterone sulfate (DHEA-S) levels, free androgen index (FAI), fasting blood glucose (FPG), fasting insulin (FINS), homeostasis model assessment of insulin resistance (HOMA-IR), insulin sensitive index (ISI) and left and right ovary volumes of the 3 groups were evaluated before and after treatment . After 3 months of treatment, when compared with before treatment data, group A patients showed decreased serum T and SHBG levels, FAI, FINS, and left and right ovary volumes (P<0.05), and increased serum DHEA-S (P<0.05), while the FPG level showed no significant change. Although the level of serum T and FINS among the 3 groups after the treatment were similar, group A demonstrated better results than group B in reducing the FAI and increasing the serum SHBG, but less significant results than group C besides, group B was the only group showed improved insulin sensitivity. Although the level of FPG of the 3 groups after treatment were similar, group C had the most increased FPG. The effects

  5. CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation

    Science.gov (United States)

    2013-01-01

    The application of fluorescence microscopy in cell biology often generates a huge amount of imaging data. Automated whole cell segmentation of such data enables the detection and analysis of individual cells, where a manual delineation is often time consuming, or practically not feasible. Furthermore, compared to manual analysis, automation normally has a higher degree of reproducibility. CellSegm, the software presented in this work, is a Matlab based command line software toolbox providing an automated whole cell segmentation of images showing surface stained cells, acquired by fluorescence microscopy. It has options for both fully automated and semi-automated cell segmentation. Major algorithmic steps are: (i) smoothing, (ii) Hessian-based ridge enhancement, (iii) marker-controlled watershed segmentation, and (iv) feature-based classfication of cell candidates. Using a wide selection of image recordings and code snippets, we demonstrate that CellSegm has the ability to detect various types of surface stained cells in 3D. After detection and outlining of individual cells, the cell candidates can be subject to software based analysis, specified and programmed by the end-user, or they can be analyzed by other software tools. A segmentation of tissue samples with appropriate characteristics is also shown to be resolvable in CellSegm. The command-line interface of CellSegm facilitates scripting of the separate tools, all implemented in Matlab, offering a high degree of flexibility and tailored workflows for the end-user. The modularity and scripting capabilities of CellSegm enable automated workflows and quantitative analysis of microscopic data, suited for high-throughput image based screening. PMID:23938087

  6. Numerical linear algebra a concise introduction with Matlab and Julia

    CERN Document Server

    Bornemann, Folkmar

    2018-01-01

    This book offers an introduction to the algorithmic-numerical thinking using basic problems of linear algebra. By focusing on linear algebra, it ensures a stronger thematic coherence than is otherwise found in introductory lectures on numerics. The book highlights the usefulness of matrix partitioning compared to a component view, leading not only to a clearer notation and shorter algorithms, but also to significant runtime gains in modern computer architectures. The algorithms and accompanying numerical examples are given in the programming environment MATLAB, and additionally – in an appendix – in the future-oriented, freely accessible programming language Julia. This book is suitable for a two-hour lecture on numerical linear algebra from the second semester of a bachelor's degree in mathematics.

  7. Bifurcation software in Matlab with applications in neuronal modeling.

    Science.gov (United States)

    Govaerts, Willy; Sautois, Bart

    2005-02-01

    Many biological phenomena, notably in neuroscience, can be modeled by dynamical systems. We describe a recent improvement of a Matlab software package for dynamical systems with applications to modeling single neurons and all-to-all connected networks of neurons. The new software features consist of an object-oriented approach to bifurcation computations and the partial inclusion of C-code to speed up the computation. As an application, we study the origin of the spiking behaviour of neurons when the equilibrium state is destabilized by an incoming current. We show that Class II behaviour, i.e. firing with a finite frequency, is possible even if the destabilization occurs through a saddle-node bifurcation. Furthermore, we show that synchronization of an all-to-all connected network of such neurons with only excitatory connections is also possible in this case.

  8. Proper generalized decompositions an introduction to computer implementation with Matlab

    CERN Document Server

    Cueto, Elías; Alfaro, Icíar

    2016-01-01

    This book is intended to help researchers overcome the entrance barrier to Proper Generalized Decomposition (PGD), by providing a valuable tool to begin the programming task. Detailed Matlab Codes are included for every chapter in the book, in which the theory previously described is translated into practice. Examples include parametric problems, non-linear model order reduction and real-time simulation, among others. Proper Generalized Decomposition (PGD) is a method for numerical simulation in many fields of applied science and engineering. As a generalization of Proper Orthogonal Decomposition or Principal Component Analysis to an arbitrary number of dimensions, PGD is able to provide the analyst with very accurate solutions for problems defined in high dimensional spaces, parametric problems and even real-time simulation. .

  9. Numerical simulation of dimples in airfoil using MATLAB

    Science.gov (United States)

    Booma Devi, P.; Shah, Dilip A.

    2017-05-01

    The Aircraft wing is a point of important research which poses greater challenge in terms of aerodynamic efficiency. The flow separation control method is addressed in classical aerodynamics methods. This study focuses on influence of dimples on controlling the flow and also increasing the aerodynamic efficiency. The periodic process of placing the cavities on the wing starting from root to tip controls the flow separation. The linear variation of characteristic curve provides the information about the flow separation and control of flow on upper surface of the airfoil.These different shapes are utilized viz., Square, Rectangle and Triangle. The numerical simulation is carried out in using MATLAB package. Preliminary analysis on the flow separation is carried out focuses on laminar flow separation, which has the influence on the overall lift generation and drag generation.

  10. MATLAB Simulation of RFID Communication Protocol for Sensor Data Acquisition

    Directory of Open Access Journals (Sweden)

    Soumen GHOSH

    2015-05-01

    Full Text Available Data acquisition processes the sampling and conditioning the signals that measure real world physical conditions such as temperature, pressure, flow etc. and convert the signal into in appropriate format for displaying and transmission to remote end. Now a days RFID i.e. Radio Frequency Identification plays a vital role in Data acquisition system. The present article proposes a smart DAS scheme containing RFID reader and Active tag. The data acquisition system is interfaced with tag through I2C bus. The reader communicates with tag following RFID communication protocol requesting to send the logged data which are refreshed and stored into tag memory periodically. The communication is simulated using MATLAB software successfully.

  11. PSYCHOACOUSTICS: a comprehensive MATLAB toolbox for auditory testing.

    Science.gov (United States)

    Soranzo, Alessandro; Grassi, Massimo

    2014-01-01

    PSYCHOACOUSTICS is a new MATLAB toolbox which implements three classic adaptive procedures for auditory threshold estimation. The first includes those of the Staircase family (method of limits, simple up-down and transformed up-down); the second is the Parameter Estimation by Sequential Testing (PEST); and the third is the Maximum Likelihood Procedure (MLP). The toolbox comes with more than twenty built-in experiments each provided with the recommended (default) parameters. However, if desired, these parameters can be modified through an intuitive and user friendly graphical interface and stored for future use (no programming skills are required). Finally, PSYCHOACOUSTICS is very flexible as it comes with several signal generators and can be easily extended for any experiment.

  12. Matlab Stability and Control Toolbox: Trim and Static Stability Module

    Science.gov (United States)

    Crespo, Luis G.; Kenny, Sean P.

    2006-01-01

    This paper presents the technical background of the Trim and Static module of the Matlab Stability and Control Toolbox. This module performs a low-fidelity stability and control assessment of an aircraft model for a set of flight critical conditions. This is attained by determining if the control authority available for trim is sufficient and if the static stability characteristics are adequate. These conditions can be selected from a prescribed set or can be specified to meet particular requirements. The prescribed set of conditions includes horizontal flight, take-off rotation, landing flare, steady roll, steady turn and pull-up/ push-over flight, for which several operating conditions can be specified. A mathematical model was developed allowing for six-dimensional trim, adjustable inertial properties, asymmetric vehicle layouts, arbitrary number of engines, multi-axial thrust vectoring, engine(s)-out conditions, crosswind and gyroscopic effects.

  13. Matlab for electrical and computer engineering students and professionals with Simulink

    CERN Document Server

    Priemer, Roland

    2013-01-01

    This book combines the teaching of the MATLAB#65533; programming language with the presentation and development of carefully selected electrical and computer engineering (ECE) fundamentals. This is what distinguishes it from other books concerned with MATLAB#65533;: it is directed specifically to ECE concerns.

  14. Scilab and MATLAB Interfaces to MUMPS (version 4.6 or greater)

    OpenAIRE

    Fèvre , Aurélia; Pralet , Stéphane; L'Excellent , Jean-Yves

    2006-01-01

    This document describes the Scilab and MATLAB interfaces to MUMPS version 4.6. We describe the differences and similarities between usual Fortran/C MUMPS interfaces and its Scilab/MATLAB interfaces, the calling sequences and functionalities. Examples of use and experimental results are also provided.

  15. Regularization Tools Version 3.0 for Matlab 5.2

    DEFF Research Database (Denmark)

    Hansen, Per Christian

    1999-01-01

    This communication describes Version 3.0 of Regularization Tools, a Matlab package for analysis and solution of discrete ill-posed problems.......This communication describes Version 3.0 of Regularization Tools, a Matlab package for analysis and solution of discrete ill-posed problems....

  16. Moosh: A Numerical Swiss Army Knife for the Optics of Multilayers in Octave/Matlab

    Directory of Open Access Journals (Sweden)

    Josselin Defrance

    2016-04-01

    Full Text Available The aim of Moosh is to provide a complete set of tools to compute all the optical properties of any multilayered structure: reflection, transmission, absorption spectra, as well as gaussian beam propagation or guided modes. It can be seen as a semi-analytic (making it light and fast solver for Maxwell’s equations in multilayers. It is written in Octave/Matlab, available on Github and based on scattering matrices, making it perfectly stable. This software is meant to be extremely easy to (reuse, and could prove useful in many research areas like photovoltaics, plasmonics and nanophotonics, as well as for educational purposes for the large number of physical phenomena it can illustrate.

  17. Development of Matlab Simulink model for dynamics analysis of passive suspension system for lightweight vehicle

    Science.gov (United States)

    Jamali, M. S.; Ismail, K. A.; Taha, Z.; Aiman, M. F.

    2017-10-01

    In designing suitable isolators to reduce unwanted vibration in vehicles, the response from a mathematical model which characterizes the transmissibility ratio of the input and output of the vehicle is required. In this study, a Matlab Simulink model is developed to study the dynamic behaviour performance of passive suspension system for a lightweight electric vehicle. The Simulink model is based on the two degrees of freedom system quarter car model. The model is compared to the theoretical plots of the transmissibility ratios between the amplitudes of the displacements and accelerations of the sprung and unsprung masses to the amplitudes of the ground, against the frequencies at different damping values. It was found that the frequency responses obtained from the theoretical calculations and from the Simulink simulation is comparable to each other. Hence, the model may be extended to a full vehicle model.

  18. Photogrammetric 3d Reconstruction in Matlab: Development of a Free Tool

    Science.gov (United States)

    Masiero, A.

    2017-11-01

    This paper presents the current state of development of a free Matlab tool for photogrammetric reconstruction developed at the University of Padova, Italy. The goal of this software is mostly educational, i.e. allowing students to have a close look to the specific steps which lead to the computation of a dense point cloud. As most of recently developed photogrammetric softwares, it is based on a Structure from Motion approach. Despite being mainly motivated by educational purposes, certain implementation details are clearly inspired by recent research works, e.g. limiting the computational burden of the feature matching by determining a suboptimal set of features to be considered, using information provided by external sensors to ease the matching process.

  19. Intimate partner violence against women: experiences from a woman-focused development programme in Matlab, Bangladesh.

    Science.gov (United States)

    Ahmed, Syed Masud

    2005-03-01

    This paper explores the association between microcredit-based development programmes and domestic violence against women perpetrated by their husbands. A sub-set of cross-sectional data collected in 1999 from 60 BRAC-ICDDR,B study villages in Matlab, Bangladesh, was used. Data were analyzed to characterize group-level differences among study women regarding the reported occurrence of violence (physical and/or mental) and to identify its predictors. About 17.5% of women had experienced violence from their husbands in the past four months, the proportion being greater among BRAC households (p = 0.05). Results of logistic regression identified age, schooling, age of household head, and self-rated poverty status of household as important predictors of violence, but not level of BRAC membership. The study concludes that the greater level of domestic violence reported during the initial stages of BRAC membership subsided with the introduction of skill-development training among participant women over time.

  20. Spectrum image analysis tool - A flexible MATLAB solution to analyze EEL and CL spectrum images.

    Science.gov (United States)

    Schmidt, Franz-Philipp; Hofer, Ferdinand; Krenn, Joachim R

    2017-02-01

    Spectrum imaging techniques, gaining simultaneously structural (image) and spectroscopic data, require appropriate and careful processing to extract information of the dataset. In this article we introduce a MATLAB based software that uses three dimensional data (EEL/CL spectrum image in dm3 format (Gatan Inc.'s DigitalMicrograph ® )) as input. A graphical user interface enables a fast and easy mapping of spectral dependent images and position dependent spectra. First, data processing such as background subtraction, deconvolution and denoising, second, multiple display options including an EEL/CL moviemaker and, third, the applicability on a large amount of data sets with a small work load makes this program an interesting tool to visualize otherwise hidden details. Copyright © 2016 Elsevier Ltd. All rights reserved.