Location, Location, Location: Management Uses of Marine Benthic Biogeographical Information in Coastal Waters of the Northeastern USA

Science.gov (United States)

Ecosystem-based management practices, along with coastal and marine spatial planning, have been adopted as foundational principles for ocean management in the United States. The success of these practices depends in large measure on a solid foundation of biogeographical informati...

New Tools to Identify the Location of Seagrass Meadows: Marine Grazers as Habitat Indicators

KAUST Repository

Hays, Graeme C.

2018-02-21

Seagrasses are hugely valuable to human life, but the global extent of seagrass meadows remains unclear. As evidence of their value, a United Nations program exists (http://data.unep-wcmc.org/datasets/7) to try and assess their distribution and there has been a call from 122 scientists across 28 countries for more work to manage, protect and monitor seagrass meadows (http://www.bbc.com/news/science-environment-37606827). Emerging from the 12th International Seagrass Biology Workshop, held in October 2016, has been the view that grazing marine megafauna may play a useful role in helping to identify previously unknown seagrass habitats. Here we describe this concept, showing how detailed information on the distribution of both dugongs (Dugong dugon) and green sea turtles (Chelonia mydas) obtained, for example, by aerial surveys and satellite tracking, can reveal new information on the location of seagrass meadows. We show examples of how marine megaherbivores have been effective habitat indicators, revealing major, new, deep-water seagrass meadows and offering the potential for more informed estimates of seagrass extent in tropical and sub-tropical regions where current information is often lacking.

Optimum location of external markers using feature selection algorithms for real-time tumor tracking in external-beam radiotherapy: a virtual phantom study.

Science.gov (United States)

Nankali, Saber; Torshabi, Ahmad Esmaili; Miandoab, Payam Samadi; Baghizadeh, Amin

2016-01-08

In external-beam radiotherapy, using external markers is one of the most reliable tools to predict tumor position, in clinical applications. The main challenge in this approach is tumor motion tracking with highest accuracy that depends heavily on external markers location, and this issue is the objective of this study. Four commercially available feature selection algorithms entitled 1) Correlation-based Feature Selection, 2) Classifier, 3) Principal Components, and 4) Relief were proposed to find optimum location of external markers in combination with two "Genetic" and "Ranker" searching procedures. The performance of these algorithms has been evaluated using four-dimensional extended cardiac-torso anthropomorphic phantom. Six tumors in lung, three tumors in liver, and 49 points on the thorax surface were taken into account to simulate internal and external motions, respectively. The root mean square error of an adaptive neuro-fuzzy inference system (ANFIS) as prediction model was considered as metric for quantitatively evaluating the performance of proposed feature selection algorithms. To do this, the thorax surface region was divided into nine smaller segments and predefined tumors motion was predicted by ANFIS using external motion data of given markers at each small segment, separately. Our comparative results showed that all feature selection algorithms can reasonably select specific external markers from those segments where the root mean square error of the ANFIS model is minimum. Moreover, the performance accuracy of proposed feature selection algorithms was compared, separately. For this, each tumor motion was predicted using motion data of those external markers selected by each feature selection algorithm. Duncan statistical test, followed by F-test, on final results reflected that all proposed feature selection algorithms have the same performance accuracy for lung tumors. But for liver tumors, a correlation-based feature selection algorithm, in

NABIC marker database: A molecular markers information network of agricultural crops.

Science.gov (United States)

Kim, Chang-Kug; Seol, Young-Joo; Lee, Dong-Jun; Jeong, In-Seon; Yoon, Ung-Han; Lee, Gang-Seob; Hahn, Jang-Ho; Park, Dong-Suk

2013-01-01

In 2013, National Agricultural Biotechnology Information Center (NABIC) reconstructs a molecular marker database for useful genetic resources. The web-based marker database consists of three major functional categories: map viewer, RSN marker and gene annotation. It provides 7250 marker locations, 3301 RSN marker property, 3280 molecular marker annotation information in agricultural plants. The individual molecular marker provides information such as marker name, expressed sequence tag number, gene definition and general marker information. This updated marker-based database provides useful information through a user-friendly web interface that assisted in tracing any new structures of the chromosomes and gene positional functions using specific molecular markers. The database is available for free at http://nabic.rda.go.kr/gere/rice/molecularMarkers/

Preface to: Special issue on Marine mycology

Digital Repository Service at National Institute of Oceanography (India)

Raghukumar, C.

the fourth symposium were published in The Biology of Marine Fungi by the late S.T.Moss from the Portsmouth Polytechnic in 1986. Interestingly, the books so far were exclusively devoted to true or obligate marine fungi but several papers describing... thraustochytrids as contaminants in their primary cell cultures of marine tunicates. They are describing six closely related species of thraustochytrids, identified by molecular markers and claim that a close biological association exist between tunicates...

Non-parallel divergence across freshwater and marine three-spined stickleback Gasterosteus aculeatus populations.

Science.gov (United States)

Pujolar, J M; Ferchaud, A L; Bekkevold, D; Hansen, M M

2017-07-01

This work investigated whether multiple freshwater populations of three-spined stickleback Gasterosteus aculeatus in different freshwater catchments in the Jutland Peninsula, Denmark, derived from the same marine populations show repeated adaptive responses. A total of 327 G. aculeatus collected at 13 sampling locations were screened for genetic variation using a combination of 70 genes putatively under selection and 26 neutral genes along with a marker linked to the ectodysplasin gene (eda), which is strongly correlated with plate armour morphs in the species. A highly significant genetic differentiation was found that was higher among different freshwater samples than between marine-freshwater samples. Tests for selection between marine and freshwater populations showed a very low degree of parallelism and no single nucleotide polymorphism was detected as outlier in all freshwater-marine pairwise comparisons, including the eda. This suggests that G. aculeatus is not necessarily the prime example of parallel local adaptation suggested in much of the literature and that important exceptions exist (i.e. the Jutland Peninsula). While marine populations in the results described here showed a high phenotype-genotype correlation at eda, a low association was found for most of the freshwater populations. The most extreme case was found in the freshwater Lake Hald where all low-plated phenotypes were either homozygotes for the allele supposed to be associated with completely plated morphs or heterozygotes, but none were homozygotes for the putative low-plated allele. Re-examination of data from seven G. aculeatus studies agrees in showing a high but partial association between phenotype-genotype at eda in G. aculeatus freshwater populations and that mismatches occur everywhere in the European regions studied (higher in some areas, i.e. Denmark). This is independent of the eda marker used. © 2017 The Fisheries Society of the British Isles.

Development of Microsatellite Markers for a Tropical Seagrass, Syringodium filiforme (Cymodoceaceae

Directory of Open Access Journals (Sweden)

Alexandra L. Bijak

2014-10-01

Full Text Available Premise of the study: A total of 17 polymorphic microsatellite markers were developed for the tropical Atlantic seagrass Syringodium filiforme (Cymodoceaceae, enabling analysis of population genetic structure in this species for the first time. Methods and Results: The 17 primers amplified di- and trinucleotide repeats revealing two to eight alleles per locus among the South Florida populations tested. In the analysis of two populations from the Florida Keys (Florida, USA, observed heterozygosity ranged from 0.063 to 0.905, although sampling was from relatively closely located populations so heterozygosity is expected to be higher across larger spatial scales. Multiplex PCRs consisting of two 6-plex and one 5-plex reactions were developed to maximize genotyping efficiency. Conclusions: We present here 17 polymorphic markers that will be useful for the study of clonality and population structure of S. filiforme, a marine plant that forms extensive habitat throughout the tropical Atlantic and Caribbean.

Optimum location of external markers using feature selection algorithms for real‐time tumor tracking in external‐beam radiotherapy: a virtual phantom study

Science.gov (United States)

Nankali, Saber; Miandoab, Payam Samadi; Baghizadeh, Amin

2016-01-01

In external‐beam radiotherapy, using external markers is one of the most reliable tools to predict tumor position, in clinical applications. The main challenge in this approach is tumor motion tracking with highest accuracy that depends heavily on external markers location, and this issue is the objective of this study. Four commercially available feature selection algorithms entitled 1) Correlation‐based Feature Selection, 2) Classifier, 3) Principal Components, and 4) Relief were proposed to find optimum location of external markers in combination with two “Genetic” and “Ranker” searching procedures. The performance of these algorithms has been evaluated using four‐dimensional extended cardiac‐torso anthropomorphic phantom. Six tumors in lung, three tumors in liver, and 49 points on the thorax surface were taken into account to simulate internal and external motions, respectively. The root mean square error of an adaptive neuro‐fuzzy inference system (ANFIS) as prediction model was considered as metric for quantitatively evaluating the performance of proposed feature selection algorithms. To do this, the thorax surface region was divided into nine smaller segments and predefined tumors motion was predicted by ANFIS using external motion data of given markers at each small segment, separately. Our comparative results showed that all feature selection algorithms can reasonably select specific external markers from those segments where the root mean square error of the ANFIS model is minimum. Moreover, the performance accuracy of proposed feature selection algorithms was compared, separately. For this, each tumor motion was predicted using motion data of those external markers selected by each feature selection algorithm. Duncan statistical test, followed by F‐test, on final results reflected that all proposed feature selection algorithms have the same performance accuracy for lung tumors. But for liver tumors, a correlation‐based feature

Biofouling community composition across a range of environmental conditions and geographical locations suitable for floating marine renewable energy generation.

Science.gov (United States)

Macleod, Adrian K; Stanley, Michele S; Day, John G; Cook, Elizabeth J

2016-01-01

Knowledge of biofouling typical of marine structures is essential for engineers to define appropriate loading criteria in addition to informing other stakeholders about the ecological implications of creating novel artificial environments. There is a lack of information regarding biofouling community composition (including weight and density characteristics) on floating structures associated with future marine renewable energy generation technologies. A network of navigation buoys were identified across a range of geographical areas, environmental conditions (tidal flow speed, temperature and salinity), and deployment durations suitable for future developments. Despite the perceived importance of environmental and temporal factors, geographical location explained the greatest proportion of the observed variation in community composition, emphasising the importance of considering geography when assessing the impact of biofouling on device functioning and associated ecology. The principal taxa associated with variation in biofouling community composition were mussels (Mytilus edulis), which were also important when determining loading criteria.

Mitochondrial DNA markers of loggerhead marine turtles (Caretta caretta (Testudines: Cheloniidae nesting at Kyparissia Bay, Greece, confirm the western Greece unit and regional structuring

Directory of Open Access Journals (Sweden)

Carlos Carreras

2014-03-01

Full Text Available Genetic markers have been widely used in marine turtles to assess population structuring and origin of individuals in common feeding grounds, which are key elements for understanding their ecology and for developing conservation strategies. However, these analyses are very sensitive to missing information, especially from abundant nesting sites. Kyparissia Bay (western Greece hosts the second largest Mediterranean nesting aggregation of the loggerhead turtle (Caretta caretta, but the genetic profile of this nesting site has not, as yet, been described using the extended version of the historically used mitochondrial DNA (mtDNA marker. This marker was genotyped for 36 individuals nesting at Kyparissia Bay and haplotype frequencies obtained were compared with published data from other Mediterranean nesting sites. The results confirmed the connection between Kyparissia and other western Greek nesting sites and the isolation of this western Greek group from other Mediterranean nesting areas. As a consequence of this isolation, this abundant group of nesting aggregations (almost 30% of the Mediterranean stock is not likely to significantly contribute to the recovery of other declining Mediterranean units.

Incorporation of conventional genetic markers and RAPD markers into an RFLP based map in maize

International Nuclear Information System (INIS)

Coe, E.H. Jr.; McMullen, M.D.; Polacco, M.; Davis, G.L.; Chao, S.

1998-01-01

Integration of classical genetic markers, in particular mutants, onto the maize Restriction Fragment Length Polymorphism (RFLP) map will provide the tools necessary to further our understanding of plant development and of complex traits. Initially integration was accomplished by visual alignment of common markers and sometimes involved the use of information from several different molecular maps to determine the relative placement of a single mutant. The maize core marker set was designed to provide a common set of markers which could be used for integration of map data. We have completed the mapping, of 56 mutants on chromosome one relative to the core marker set. Phenotypes included whole plant, seedling, and kernel effects and represented a variety of biological processes. Since these mutants were previously located to chromosome arm, mapping required the use of only seven markers per mutant to define the correct bin location. Two mistakes in marker order relative to the classical map were identified, as well as, six groups of mutants which require allelism testing. Placement of mutants and cDNAs into bins using, the core markers provides a necessary resource for identification of gene function in maize. (author)

Conserving marine biodiversity: insights from life-history trait candidate genes in Atlantic cod (Gadus morhua)

DEFF Research Database (Denmark)

Hansen, Jakob Hemmer; Therkildsen, Nina Overgaard; Meldrup, Dorte

2014-01-01

Recent technological developments have facilitated an increased focus on identifying genomic regions underlying adaptive trait variation in natural populations, and it has been advocated that this information should be important for designating population units for conservation. In marine fishes...... are under selection in natural populations of Atlantic cod. Furthermore, we find that patterns of variation in outlier markers do not align with those observed at selectively neutral markers, and that outlier markers identify conservation units on finer geographical scales than those revealed when analysing...... only neutral markers. Accordingly, results also suggest that information about adaptive genetic variation will be useful for targeted conservation and management in this and other marine species...

Computerized method for estimation of the location of a lung tumor on EPID cine images without implanted markers in stereotactic body radiotherapy

International Nuclear Information System (INIS)

Arimura, H; Toyofuku, F; Higashida, Y; Onizuka, Y; Terashima, H; Egashira, Y; Shioyama, Y; Nomoto, S; Honda, H; Nakamura, K; Yoshidome, S; Anai, S

2009-01-01

The purpose of this study was to develop a computerized method for estimation of the location of a lung tumor in cine images on an electronic portal imaging device (EPID) without implanted markers during stereotactic body radiotherapy (SBRT). Each tumor region was segmented in the first EPID cine image, i.e., reference portal image, based on a multiple-gray level thresholding technique and a region growing technique, and then the image including the tumor region was cropped as a 'tumor template' image. The tumor location was determined as the position in which the tumor template image took the maximum cross-correlation value within each consecutive portal image, which was acquired in cine mode on the EPID in treatment. EPID images with 512 x 384 pixels (pixel size: 0.56 mm) were acquired at a sampling rate of 0.5 frame s -1 by using energies of 4, 6 or 10 MV on linear accelerators. We applied our proposed method to EPID cine images (226 frames) of 12 clinical cases (ages: 51-83, mean: 72) with a non-small cell lung cancer. As a result, the average location error between tumor points obtained by our method and the manual method was 1.47 ± 0.60 mm. This preliminary study suggests that our method based on the tumor template matching technique might be feasible for tracking the location of a lung tumor without implanted markers in SBRT.

Phylogeography of the sponge Suberites diversicolor in Indonesia: insights into the evolution of marine lake populations.

Science.gov (United States)

Becking, Leontine E; Erpenbeck, Dirk; Peijnenburg, Katja T C A; de Voogd, Nicole J

2013-01-01

The existence of multiple independently derived populations in landlocked marine lakes provides an opportunity for fundamental research into the role of isolation in population divergence and speciation in marine taxa. Marine lakes are landlocked water bodies that maintain a marine character through narrow submarine connections to the sea and could be regarded as the marine equivalents of terrestrial islands. The sponge Suberites diversicolor (Porifera: Demospongiae: Suberitidae) is typical of marine lake habitats in the Indo-Australian Archipelago. Four molecular markers (two mitochondrial and two nuclear) were employed to study genetic structure of populations within and between marine lakes in Indonesia and three coastal locations in Indonesia, Singapore and Australia. Within populations of S. diversicolor two strongly divergent lineages (A & B) (COI: p = 0.4% and ITS: p = 7.3%) were found, that may constitute cryptic species. Lineage A only occurred in Kakaban lake (East Kalimantan), while lineage B was present in all sampled populations. Within lineage B, we found low levels of genetic diversity in lakes, though there was spatial genetic population structuring. The Australian population is genetically differentiated from the Indonesian populations. Within Indonesia we did not record an East-West barrier, which has frequently been reported for other marine invertebrates. Kakaban lake is the largest and most isolated marine lake in Indonesia and contains the highest genetic diversity with genetic variants not observed elsewhere. Kakaban lake may be an area where multiple putative refugia populations have come into secondary contact, resulting in high levels of genetic diversity and a high number of endemic species.

Phylogeography of the Sponge Suberites diversicolor in Indonesia: Insights into the Evolution of Marine Lake Populations

Science.gov (United States)

Becking, Leontine E.; Erpenbeck, Dirk; Peijnenburg, Katja T. C. A.; de Voogd, Nicole J.

2013-01-01

The existence of multiple independently derived populations in landlocked marine lakes provides an opportunity for fundamental research into the role of isolation in population divergence and speciation in marine taxa. Marine lakes are landlocked water bodies that maintain a marine character through narrow submarine connections to the sea and could be regarded as the marine equivalents of terrestrial islands. The sponge Suberites diversicolor (Porifera: Demospongiae: Suberitidae) is typical of marine lake habitats in the Indo-Australian Archipelago. Four molecular markers (two mitochondrial and two nuclear) were employed to study genetic structure of populations within and between marine lakes in Indonesia and three coastal locations in Indonesia, Singapore and Australia. Within populations of S. diversicolor two strongly divergent lineages (A & B) (COI: p = 0.4% and ITS: p = 7.3%) were found, that may constitute cryptic species. Lineage A only occurred in Kakaban lake (East Kalimantan), while lineage B was present in all sampled populations. Within lineage B, we found low levels of genetic diversity in lakes, though there was spatial genetic population structuring. The Australian population is genetically differentiated from the Indonesian populations. Within Indonesia we did not record an East-West barrier, which has frequently been reported for other marine invertebrates. Kakaban lake is the largest and most isolated marine lake in Indonesia and contains the highest genetic diversity with genetic variants not observed elsewhere. Kakaban lake may be an area where multiple putative refugia populations have come into secondary contact, resulting in high levels of genetic diversity and a high number of endemic species. PMID:24098416

Radiopaque anastomosis marker

International Nuclear Information System (INIS)

Elliott, D.P.; Halseth, W.L.

1977-01-01

This invention relates to split ring markers fabricated in whole or in part from a radiopaque material, usually metal, having the terminal ends thereof and a medial portion formed to define eyelets by means of which said marker can be sutured to the tissue at the site of an anastomosis to provide a visual indication of its location when examined fluoroscopically

33 CFR 3.40-15 - Sector New Orleans Marine Inspection Zone and Captain of the Port Zone; Marine Safety Unit Morgan...

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Sector New Orleans Marine....40-15 Sector New Orleans Marine Inspection Zone and Captain of the Port Zone; Marine Safety Unit Morgan City. Sector New Orleans' office is located in New Orleans, LA. A subordinate unit, Marine Safety...

[Application of lysosomal detection in marine pollution monitoring: research progress].

Science.gov (United States)

Weng, You-Zhu; Fang, Yong-Qiang; Zhang, Yu-Sheng

2013-11-01

Lysosome is an important organelle existing in eukaryotic cells. With the development of the study on the structure and function of lysosome in recent years, lysosome is considered as a target of toxic substances on subcellular level, and has been widely applied abroad in marine pollution monitoring. This paper summarized the biological characteristics of lysosomal marker enzyme, lysosome-autophagy system, and lysosomal membrane, and introduced the principles and methods of applying lysosomal detection in marine pollution monitoring. Bivalve shellfish digestive gland and fish liver are the most sensitive organs for lysosomal detection. By adopting the lysosomal detection techniques such as lysosomal membrane stability (LMS) test, neutral red retention time (NRRT) assay, morphological measurement (MM) of lysosome, immunohistochemical (Ih) assay of lysosomal marker enzyme, and electron microscopy (EM), the status of marine pollution can be evaluated. It was suggested that the lysosome could be used as a biomarker for monitoring marine environmental pollution. The advantages and disadvantages of lysosomal detection and some problems worthy of attention were analyzed, and the application prospects of lysosomal detection were discussed.

Modeling marine surface microplastic transport to assess optimal removal locations

NARCIS (Netherlands)

Sherman, Peter; Van Sebille, Erik

2016-01-01

Marine plastic pollution is an ever-increasing problem that demands immediate mitigation and reduction plans. Here, a model based on satellite-tracked buoy observations and scaled to a large data set of observations on microplastic from surface trawls was used to simulate the transport of plastics

Southeast US Historical Marine Mammal Stranding Database

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Data on marine mammal strandings are collected by the Southeast Marine Mammal Stranding Network. Basic data on the location, species identification, animal...

75 FR 25729 - Takes of Marine Mammals Incidental to Specified Activities; Taking Marine Mammals Incidental to...

Science.gov (United States)

2010-05-07

.... Department of the Interior, Minerals Management Service (MMS) Alaska OCS leases located greater than 60 mi... in the Chukchi Sea on marine mammals would most likely be acoustic in nature. Petroleum development and associated activities introduce sound into the marine environment. Potential acoustic effects on...

Checklist of marine fishes of the Zunan Islands, located between the Izu and Ogasawara (Bonin) islands, Japan, with zoogeographical comments

OpenAIRE

Kuriiwa, Kaoru; Arihara, Hisashi; Chiba, Satoru; Kato, Shoichi; Senou, Hiroshi; Matsuura, Keiichi

2014-01-01

The Zunan Islands are located 360–650 km south of Tokyo, and consist of four uninhabited volcanoes: the Bayonnaise Rocks, the Smith Rocks, Torishima Island and the Sofugan Rock. Although all of the elements of the Zunan Islands are tiny islets and rocks, they form a series of stepping stones for shallow water fishes between the Izu Islands in the north and the Ogasawara (Bonin) Islands in the south. We report here the first comprehensive survey of marine fishes in the Zunan Islands. A total o...

33 CFR 3.40-28 - Sector Houston-Galveston Marine Inspection Zone and Captain of the Port Zone; Marine Safety Unit...

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Sector Houston-Galveston Marine....40-28 Sector Houston-Galveston Marine Inspection Zone and Captain of the Port Zone; Marine Safety Unit Port Arthur. Sector Houston-Galveston's office is located in Galena Park, TX. A subordinate unit...

Health effects due to the release of iodine 129 from the marine outlet for the reprocessing plant located at La Hague

International Nuclear Information System (INIS)

Robeau, D.; Calmet, D.

1985-02-01

The study contained in this report estimates the health effects in terms of doses to the populations due to the release of Iodine 129 from the marine outlet for the reprocessing plant located at La Hague. The release taken into account is due to the normal functioning of the plant, which introduces a consistent contamination of the English channel during the life of the plant which is thirty years. The annual release of Iodine 129, as assumed by the operating staff, is equal to either 1,662.10 12 Bq or 45 Ci. The dose equivalent to the thyroid of the concerned population due to normal consummation of marine products (fish, shell-fish, mollusc) are very low as compared to the 6.10 -4 limit of dose authorized for the public in the actual regulation. The effective dose equivalent has been estimated at 4.27.10 -7 Sv [fr

Linking the potato genome to the conserved ortholog set (COS) markers

Science.gov (United States)

2013-01-01

Background Conserved ortholog set (COS) markers are an important functional genomics resource that has greatly improved orthology detection in Asterid species. A comprehensive list of these markers is available at Sol Genomics Network (http://solgenomics.net/) and many of these have been placed on the genetic maps of a number of solanaceous species. Results We amplified over 300 COS markers from eight potato accessions involving two diploid landraces of Solanum tuberosum Andigenum group (formerly classified as S. goniocalyx, S. phureja), and a dihaploid clone derived from a modern tetraploid cultivar of S. tuberosum and the wild species S. berthaultii, S. chomatophilum, and S. paucissectum. By BLASTn (Basic Local Alignment Search Tool of the NCBI, National Center for Biotechnology Information) algorithm we mapped the DNA sequences of these markers into the potato genome sequence. Additionally, we mapped a subset of these markers genetically in potato and present a comparison between the physical and genetic locations of these markers in potato and in comparison with the genetic location in tomato. We found that most of the COS markers are single-copy in the reference genome of potato and that the genetic location in tomato and physical location in potato sequence are mostly in agreement. However, we did find some COS markers that are present in multiple copies and those that map in unexpected locations. Sequence comparisons between species show that some of these markers may be paralogs. Conclusions The sequence-based physical map becomes helpful in identification of markers for traits of interest thereby reducing the number of markers to be tested for applications like marker assisted selection, diversity, and phylogenetic studies. PMID:23758607

The Common Marine Isopod Crustacea of Puerto Rico A handbook for marine biologists

NARCIS (Netherlands)

Menzies, Robert J.; Glynn, Peter W.

1968-01-01

The collecting sites from which isopods were obtained are located around the island (see p. 84). Concentrated collecting at several depths was done in the San Juan area at Boca de Cangrejos and at La Parguera where the Institute of Marine Biology is located. Many collections were made by washing a

Accounting for tourism benefits in marine reserve design

Science.gov (United States)

2017-01-01

Marine reserve design often considers potential benefits to conservation and/or fisheries but typically ignores potential revenues generated through tourism. Since tourism can be the main source of economic benefits for many marine reserves worldwide, ignoring tourism objectives in the design process might lead to sub-optimal outcomes. To incorporate tourism benefits into marine reserve design, we develop a bioeconomic model that tracks tourism and fisheries revenues through time for different management options and location characteristics. Results from the model show that accounting for tourism benefits will ultimately motivate greater ocean protection. Our findings demonstrate that marine reserves are part of the optimal economic solution even in situations with optimal fisheries management and low tourism value relative to fisheries. The extent of optimal protection depends on specific location characteristics, such as tourism potential and other local amenities, and the species recreational divers care about. Additionally, as tourism value increases, optimal reserve area also increases. Finally, we demonstrate how tradeoffs between the two services depend on location attributes and management of the fishery outside marine reserve borders. Understanding when unavoidable tradeoffs will arise helps identify those situations where communities must choose between competing interests. PMID:29267364

Rice genetic marker database: An identification of single nucleotide ...

African Journals Online (AJOL)

based genetic marker system to provide information about SNP and QTL markers in rice. The SNP marker database provides 7,227 SNP markers including location information on chromosomes by using genetic map. It allows users to access a ...

Southeast Region Level A Marine Mammal Stranding Data

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Data on marine mammal strandings are collected by the Southeast Marine Mammal Stranding Network. Basic data on the location, species identification, animal...

78 FR 42042 - Taking of Marine Mammals Incidental to Specified Activities; U.S. Marine Corps Training Exercises...

Science.gov (United States)

2013-07-15

... of marine mammals (e.g., milling, travel, social, foraging); (4) location and relative distance from... principal marine mammal stranding networks and other media to correlate analysis of any dolphin strandings... strike if the animal has disappeared), and whether the animal is alive or dead (or unknown); Report to us...

Evaluation of Alternative Technologies to Supply Drinking Water to Marines in Forward Deployed Locations

Science.gov (United States)

2010-03-01

Afghanistan.” 2009. http://www.coleparmer.com/techinfo/techinfo.asp?htmlfile= water - afghanistan.htm&ID=964. Christ- wasser . “RO, EDI and optional UF...Cover, Single-Author Thesis EVALUATION OF ALTERNATIVE TECHNOLOGIES TO SUPPLY DRINKING WATER TO MARINES IN FORWARD DEPLOYED...AFIT/GES/ENV/10-M02 EVALUATION OF ALTERNATIVE TECHNOLOGIES TO SUPPLY DRINKING WATER TO MARINES IN FORWARD DEPLOYED

Marine Carotenoids against Oxidative Stress: Effects on Human Health

Directory of Open Access Journals (Sweden)

Maria Alessandra Gammone

2015-09-01

Full Text Available Carotenoids are lipid-soluble pigments that are produced in some plants, algae, fungi, and bacterial species, which accounts for their orange and yellow hues. Carotenoids are powerful antioxidants thanks to their ability to quench singlet oxygen, to be oxidized, to be isomerized, and to scavenge free radicals, which plays a crucial role in the etiology of several diseases. Unusual marine environments are associated with a great chemical diversity, resulting in novel bioactive molecules. Thus, marine organisms may represent an important source of novel biologically active substances for the development of therapeutics. In this respect, various novel marine carotenoids have recently been isolated from marine organisms and displayed several utilizations as nutraceuticals and pharmaceuticals. Marine carotenoids (astaxanthin, fucoxanthin, β-carotene, lutein but also the rare siphonaxanthin, sioxanthin, and myxol have recently shown antioxidant properties in reducing oxidative stress markers. This review aims to describe the role of marine carotenoids against oxidative stress and their potential applications in preventing and treating inflammatory diseases.

Marine Carotenoids against Oxidative Stress: Effects on Human Health.

Science.gov (United States)

Gammone, Maria Alessandra; Riccioni, Graziano; D'Orazio, Nicolantonio

2015-09-30

Carotenoids are lipid-soluble pigments that are produced in some plants, algae, fungi, and bacterial species, which accounts for their orange and yellow hues. Carotenoids are powerful antioxidants thanks to their ability to quench singlet oxygen, to be oxidized, to be isomerized, and to scavenge free radicals, which plays a crucial role in the etiology of several diseases. Unusual marine environments are associated with a great chemical diversity, resulting in novel bioactive molecules. Thus, marine organisms may represent an important source of novel biologically active substances for the development of therapeutics. In this respect, various novel marine carotenoids have recently been isolated from marine organisms and displayed several utilizations as nutraceuticals and pharmaceuticals. Marine carotenoids (astaxanthin, fucoxanthin, β-carotene, lutein but also the rare siphonaxanthin, sioxanthin, and myxol) have recently shown antioxidant properties in reducing oxidative stress markers. This review aims to describe the role of marine carotenoids against oxidative stress and their potential applications in preventing and treating inflammatory diseases.

A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)

DEFF Research Database (Denmark)

Ferchaud, Anne-Laure; Pedersen, Susanne H.; Bekkevold, Dorte

2014-01-01

for rapid and cost efficient analysis of genetic divergence between freshwater and marine sticklebacks, we generated a low-density SNP (Single Nucleotide Polymorphism) array encompassing markers of chromosome regions under putative directional selection, along with neutral markers for background. Results......: RAD (Restriction site Associated DNA) sequencing of sixty individuals representing two freshwater and one marine population led to the identification of 33,993 SNP markers. Ninety-six of these were chosen for the low-density SNP array, among which 70 represented SNPs under putatively directional...... selection in freshwater vs. marine environments, whereas 26 SNPs were assumed to be neutral. Annotation of these regions revealed several genes that are candidates for affecting stickleback phenotypic variation, some of which have been observed in previous studies whereas others are new. Conclusions: We...

Reticulate Evolution and Marine Organisms: The Final Frontier?

Directory of Open Access Journals (Sweden)

Michael L. Arnold

2009-09-01

Full Text Available The role that reticulate evolution (i.e., via lateral transfer, viral recombination and/or introgressive hybridization has played in the origin and adaptation of individual taxa and even entire clades continues to be tested for all domains of life. Though falsified for some groups, the hypothesis of divergence in the face of gene flow is becoming accepted as a major facilitator of evolutionary change for many microorganisms, plants and animals. Yet, the effect of reticulate evolutionary change in certain assemblages has been doubted, either due to an actual dearth of genetic exchange among the lineages belonging to these clades or because of a lack of appropriate data to test alternative hypotheses. Marine organisms represent such an assemblage. In the past half-century, some evolutionary biologists interested in the origin and trajectory of marine organisms, particularly animals, have posited that horizontal transfer, introgression and hybrid speciation have been rare. In this review, we provide examples of such genetic exchange that have come to light largely as a result of analyses of molecular markers. Comparisons among these markers and between these loci and morphological characters have provided numerous examples of marine microorganisms, plants and animals that possess the signature of mosaic genomes.

The effect of farmed trout on cardiovascular risk markers in healthy men

DEFF Research Database (Denmark)

Hallund, Jesper; Madsen, Birgitte Overgaard; Bügel, Susanne H.

2010-01-01

, insulin, C-reactive protein (CRP) and other markers of inflammation were measured at weeks 0 and 8. RBC content of total n-3 LCPUFA, both EPA and DHA, was significantly higher among men consuming trout raised on marine feed compared with men consuming the vegetable-fed trout or chicken. The three...... meal with 150 g farmed trout raised on either marine or vegetable-based feed, or a reference meal containing 150 g chicken. Twenty-four hour BP, pulse wave velocity, augmentation index, fatty acid composition of erythrocyte (RBC), and concentrations of TAG, HDL-cholesterol, LDL-cholesterol, glucose...... risk markers after daily consumption of trout with high or low n-3 LCPUFA content. However, trout raised on vegetable-based feed had less pronounced impact on RBC n-3 LCPUFA status....

Marine Genomics: A clearing-house for genomic and transcriptomic data of marine organisms

Directory of Open Access Journals (Sweden)

Trent Harold F

2005-03-01

Full Text Available Abstract Background The Marine Genomics project is a functional genomics initiative developed to provide a pipeline for the curation of Expressed Sequence Tags (ESTs and gene expression microarray data for marine organisms. It provides a unique clearing-house for marine specific EST and microarray data and is currently available at http://www.marinegenomics.org. Description The Marine Genomics pipeline automates the processing, maintenance, storage and analysis of EST and microarray data for an increasing number of marine species. It currently contains 19 species databases (over 46,000 EST sequences that are maintained by registered users from local and remote locations in Europe and South America in addition to the USA. A collection of analysis tools are implemented. These include a pipeline upload tool for EST FASTA file, sequence trace file and microarray data, an annotative text search, automated sequence trimming, sequence quality control (QA/QC editing, sequence BLAST capabilities and a tool for interactive submission to GenBank. Another feature of this resource is the integration with a scientific computing analysis environment implemented by MATLAB. Conclusion The conglomeration of multiple marine organisms with integrated analysis tools enables users to focus on the comprehensive descriptions of transcriptomic responses to typical marine stresses. This cross species data comparison and integration enables users to contain their research within a marine-oriented data management and analysis environment.

SNP Discovery In Marine Fish Species By 454 Sequencing

DEFF Research Database (Denmark)

Panitz, Frank; Nielsen, Rasmus Ory; van Houdt, Jeroen K J

2011-01-01

Based on the 454 Next-Generation-Sequencing technology (Roche) a high throughput screening method was devised in order to generate novel genetic markers (SNPs). SNP discovery was performed for three target species of marine fish: hake (Merluccius merluccius), herring (Clupea harengus) and sole...

Marine phages as excellent tracers for reactive colloidal transport in porous media

Science.gov (United States)

Ghanem, Nawras; Chatzinotas, Antonis; Harms, Hauke; Wick, Lukas Y.

2016-04-01

Question: Here we evaluate marine phages as specific markers of hydrological flow and reactive transport of colloidal particles in the Earth's critical zone (CZ). Marine phages and their bacterial hosts are naturally absent in the CZ, and can be detected with extremely high sensitivity. In the framework of the DFG Collaborative Research Center AquaDiva, we asked the following questions: (1) Are marine phages useful specific markers of hydrological flow and reactive transport in porous media? and (2) Which phage properties are relevant drivers for the transport of marine phages in porous media? Methods: Seven marine phages from different families (as well two commonly used terrestrial phages) were selected based on their morphology, size and physico-chemical surface properties (surface charge and hydrophobicity). Phage properties were assessed by electron microscopy, dynamic light scattering and water contact angle analysis (CA). Sand-filled laboratory percolation columns were used to study transport. The breakthrough curves of the phages were analyzed using the clean bed filtration theory and the XDLVO theory of colloid stability, respectively. Phages were quantified by a modified high- throughput plaque assay and a culture-independent particle counting method approach. Results: Our data show that most marine tested phages exhibited highly variable transport rates and deposition efficiency, yet generally high colloidal stability and viability. We find that size, morphology and hydrophobicity are key factors shaping the transport efficiency of phages. Differing deposition efficiencies of the phages were also supported by calculated XDLVO interaction energy profile. Conclusion: Marine phages have a high potential for the use as sensitive tracers in terrestrial habitats with their surface properties playing a crucial role for their transport. Marine phages however, exhibit differences in their deposition efficiency depending on their morphology, hydrophobicity and

A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus).

Science.gov (United States)

Ferchaud, Anne-Laure; Pedersen, Susanne H; Bekkevold, Dorte; Jian, Jianbo; Niu, Yongchao; Hansen, Michael M

2014-10-06

The threespine stickleback (Gasterosteus aculeatus) has become an important model species for studying both contemporary and parallel evolution. In particular, differential adaptation to freshwater and marine environments has led to high differentiation between freshwater and marine stickleback populations at the phenotypic trait of lateral plate morphology and the underlying candidate gene Ectodysplacin (EDA). Many studies have focused on this trait and candidate gene, although other genes involved in marine-freshwater adaptation may be equally important. In order to develop a resource for rapid and cost efficient analysis of genetic divergence between freshwater and marine sticklebacks, we generated a low-density SNP (Single Nucleotide Polymorphism) array encompassing markers of chromosome regions under putative directional selection, along with neutral markers for background. RAD (Restriction site Associated DNA) sequencing of sixty individuals representing two freshwater and one marine population led to the identification of 33,993 SNP markers. Ninety-six of these were chosen for the low-density SNP array, among which 70 represented SNPs under putatively directional selection in freshwater vs. marine environments, whereas 26 SNPs were assumed to be neutral. Annotation of these regions revealed several genes that are candidates for affecting stickleback phenotypic variation, some of which have been observed in previous studies whereas others are new. We have developed a cost-efficient low-density SNP array that allows for rapid screening of polymorphisms in threespine stickleback. The array provides a valuable tool for analyzing adaptive divergence between freshwater and marine stickleback populations beyond the well-established candidate gene Ectodysplacin (EDA).

The Marine Sciences Laboratory (MSL)

Data.gov (United States)

Federal Laboratory Consortium — The�Marine Sciences Laboratory sits on 140 acres of tidelands and uplands located on Sequim Bay, Washington. Key capabilities include 6,000 sq ft of analytical and...

Where and What Is Pristine Marine Aerosol?

Science.gov (United States)

Russell, L. M.; Frossard, A. A.; Long, M. S.; Burrows, S. M.; Elliott, S.; Bates, T. S.; Quinn, P.

2014-12-01

The sources and composition of atmospheric marine aerosol particles have been measured by functional group composition (from Fourier transform infrared spectroscopy) to identify the organic composition of the pristine primary marine (ocean-derived) particles as 65% hydroxyl, 21% alkane, 6% amine, and 7% carboxylic acid functional groups [Frossard et al., 2014a,b]. Pristine but non-primary components from photochemical reactions (likely from biogenic marine vapor emissions) add carboxylic acid groups. Non-pristine contributions include shipping effluent in seawater and ship emissions, which add additional alkane groups (up to 70%), and coastal or continental emissions mix in alkane and carboxylic acid groups. The pristine primary marine (ocean-derived) organic aerosol composition is nearly identical to model generated primary marine aerosol particles from bubbled seawater, indicating that its overall functional group composition is the direct consequence of the organic constituents of the seawater source. While the seawater organic functional group composition was nearly invariant across all three ocean regions studied and the ratio of organic carbon to sodium (OC/Na+) in the generated primary marine aerosol particles remained nearly constant over a broad range of chlorophyll-a concentrations, the generated primary marine aerosol particle alkane group fraction increased with chlorophyll-a concentrations. In addition, the generated primary marine aerosol particles have a hydroxyl group absorption peak location characteristic of monosaccharides and disaccharides, where the seawater hydroxyl group peak location is closer to that of polysaccharides. References Cited Frossard, Amanda A., Lynn M. Russell, Paola Massoli, Timothy S. Bates, and Patricia K. Quinn, "Side-by-Side Comparison of Four Techniques Explains the Apparent Differences in the Organic Composition of Generated and Ambient Marine Aerosol Particles," Aerosol Science and Technology - Aerosol Research Letter

Molecular markers associated with aluminium tolerance in Sorghum bicolor.

Science.gov (United States)

Too, Emily Jepkosgei; Onkware, Augustino Osoro; Were, Beatrice Ang'iyo; Gudu, Samuel; Carlsson, Anders; Geleta, Mulatu

2018-01-01

Sorghum ( Sorghum bicolor , L. Moench) production in many agro-ecologies is constrained by a variety of stresses, including high levels of aluminium (Al) commonly found in acid soils. Therefore, for such soils, growing Al tolerant cultivars is imperative for high productivity. In this study, molecular markers associated with Al tolerance were identified using a mapping population developed by crossing two contrasting genotypes for this trait. Four SSR ( Xtxp34 , Sb5_236 , Sb6_34 , and Sb6_342 ), one STS ( CTG29_3b ) and three ISSR ( 811_1400 , 835_200 and 884_200 ) markers produced alleles that showed significant association with Al tolerance. CTG29_3b, 811_1400 , Xtxp34 and Sb5_ 236 are located on chromosome 3 with the first two markers located close to Alt SB , a locus that underlie the Al tolerance gene ( SbMATE ) implying that their association with Al tolerance is due to their linkage to this gene. Although CTG29_3b and 811_ 1400 are located closer to Alt SB , Xtxp34 and Sb5_236 explained higher phenotypic variance of Al tolerance indices. Markers 835_200 , 884_200 , Sb6_34 and Sb6_342 are located on different chromosomes, which implies the presence of several genes involved in Al tolerance in addition to S bMATE in sorghum. These molecular markers have a high potential for use in breeding for Al tolerance in sorghum.

Inter fractional variability of breathing phase definition as determined by fiducial location

International Nuclear Information System (INIS)

Killoran, Joseph H.; Allen, Aaron M.; Kann, Benjamin H.; Lyatskaya, Yulia

2008-01-01

Reconstruction of four-dimensional (4D) imaging typically requires an externally measurable surrogate to represent the real-time relative phase of respiration. A common method is to use a reflective marker on the external surface of the patient which moves with respiration and can be tracked in real time. The location of the marker is often chosen to maximize the observable motion, though this location may not be at the region of interest. We evaluate the importance of infrared (IR) marker placement location on breathing phase definition for the purpose of respiratory gating and 4D computed tomography (CT) image reconstruction. Data were collected for ten patients enrolled on an approved IRB protocol. Real-time position data were collected during CT imaging and daily treatments for two external IR reflective markers: one placed near the xyphoid and another at the approximate location of the treatment isocenter. Motion traces from the markers were compared using cross-correlation coefficient and by estimating the relative respiratory phase, based on either marker, as would be used for 4D-CT reconstruction. Cross-correlation analysis revealed differences in the motion waveform, as well as phase differences, both of which were variable between patients as well as day to day for the same patient. Estimated relative phases from each marker were compared by the percentage amount of time the estimated phase for each marker was different, binned based on increments of 10% of a full cycle. For all collected data combined, the frequency with which breathing phase mismatch led to different bin allocation in steps of 10% was as follows: T 010% =65.1%, T 1020% =25.3%, T 2030% =7.8%, T 3040% =1.5% and T 4050% =0.4%. Based on ten images per cycle, this indicates that 4D reconstructions would be influenced, depending on which marker was used, by at least 1 bin 34.9% of the time. This number was noticeably higher for some patients; the maximum was 71% of the time for one patient of

Understanding oceanic migrations with intrinsic biogeochemical markers.

Directory of Open Access Journals (Sweden)

Raül Ramos

2009-07-01

Full Text Available Migratory marine vertebrates move annually across remote oceanic water masses crossing international borders. Many anthropogenic threats such as overfishing, bycatch, pollution or global warming put millions of marine migrants at risk especially during their long-distance movements. Therefore, precise knowledge about these migratory movements to understand where and when these animals are more exposed to human impacts is vital for addressing marine conservation issues. Because electronic tracking devices suffer from several constraints, mainly logistical and financial, there is emerging interest in finding appropriate intrinsic markers, such as the chemical composition of inert tissues, to study long-distance migrations and identify wintering sites. Here, using tracked pelagic seabirds and some of their own feathers which were known to be grown at different places and times within the annual cycle, we proved the value of biogeochemical analyses of inert tissue as tracers of marine movements and habitat use. Analyses of feathers grown in summer showed that both stable isotope signatures and element concentrations can signal the origin of breeding birds feeding in distinct water masses. However, only stable isotopes signalled water masses used during winter because elements mainly accumulated during the long breeding period are incorporated into feathers grown in both summer and winter. Our findings shed new light on the simple and effective assignment of marine organisms to distinct oceanic areas, providing new opportunities to study unknown migration patterns of secretive species, including in relation to human-induced mortality on specific populations in the marine environment.

Marine bioacoustics and technology: The new world of marine acoustic ecology

Science.gov (United States)

Hastings, Mardi C.; Au, Whitlow W. L.

2012-11-01

Marine animals use sound for communication, navigation, predator avoidance, and prey detection. Thus the rise in acoustic energy associated with increasing human activity in the ocean has potential to impact the lives of marine animals. Thirty years ago marine bioacoustics primarily focused on evaluating effects of human-generated sound on hearing and behavior by testing captive animals and visually observing wild animals. Since that time rapidly changing electronic and computing technologies have yielded three tools that revolutionized how bioacousticians study marine animals. These tools are (1) portable systems for measuring electrophysiological auditory evoked potentials, (2) miniaturized tags equipped with positioning sensors and acoustic recording devices for continuous short-term acoustical observation rather than intermittent visual observation, and (3) passive acoustic monitoring (PAM) systems for remote long-term acoustic observations at specific locations. The beauty of these breakthroughs is their direct applicability to wild animals in natural habitats rather than only to animals held in captivity. Hearing capabilities of many wild species including polar bears, beaked whales, and reef fishes have now been assessed by measuring their auditory evoked potentials. Miniaturized acoustic tags temporarily attached to an animal to record its movements and acoustic environment have revealed the acoustic foraging behavior of sperm and beaked whales. Now tags are being adapted to fishes in effort to understand their behavior in the presence of noise. Moving and static PAM systems automatically detect and characterize biological and physical features of an ocean area without adding any acoustic energy to the environment. PAM is becoming a powerful technique for understanding and managing marine habitats. This paper will review the influence of these transformative tools on the knowledge base of marine bioacoustics and elucidation of relationships between marine

A Novel Marker Based Method to Teeth Alignment in MRI

Science.gov (United States)

Luukinen, Jean-Marc; Aalto, Daniel; Malinen, Jarmo; Niikuni, Naoko; Saunavaara, Jani; Jääsaari, Päivi; Ojalammi, Antti; Parkkola, Riitta; Soukka, Tero; Happonen, Risto-Pekka

2018-04-01

Magnetic resonance imaging (MRI) can precisely capture the anatomy of the vocal tract. However, the crowns of teeth are not visible in standard MRI scans. In this study, a marker-based teeth alignment method is presented and evaluated. Ten patients undergoing orthognathic surgery were enrolled. Supraglottal airways were imaged preoperatively using structural MRI. MRI visible markers were developed, and they were attached to maxillary teeth and corresponding locations on the dental casts. Repeated measurements of intermarker distances in MRI and in a replica model was compared using linear regression analysis. Dental cast MRI and corresponding caliper measurements did not differ significantly. In contrast, the marker locations in vivo differed somewhat from the dental cast measurements likely due to marker placement inaccuracies. The markers were clearly visible in MRI and allowed for dental models to be aligned to head and neck MRI scans.

14 CFR 171.321 - DME and marker beacon performance requirements.

Science.gov (United States)

2010-01-01

... 14 Aeronautics and Space 3 2010-01-01 2010-01-01 false DME and marker beacon performance... (MLS) § 171.321 DME and marker beacon performance requirements. (a) The DME equipment must meet the..._regulations/ibr_locations.html. (b) MLS marker beacon equipment must meet the performance requirements...

Natural radionuclides in the UK marine environment

Energy Technology Data Exchange (ETDEWEB)

Rollo, S F.N.; Camplin, W C; Allington, D J; Young, A K [Ministry of Agriculture, Fisheries and Food, Lowestoft (United Kingdom). Fisheries Radiobiological Lab.

1992-01-01

The importance of natural radionuclides giving rise to radiation exposure of man from marine consumption pathways has been known for some time. However, the extent of surveys of levels in marine biota has been limited. This paper presents new data on concentrations of natural radionuclides in fish, shellfish and seaweeds taken from coastal sampling locations in the U.K. Sampling included areas where levels due to natural sources would be predominant, but efforts were made to study potential sources of technologically enhanced discharges to seas and rivers, particularly the phosphogypsum plant at Whitehaven in Cumbria. The highest concentrations (up to 371 Bq.kg[sup -1] (wet) [sup 210]Po) were observed in winkles near Whitehaven. The general levels at sites remote from known sources were much lower. Monthly concentrations in molluscs at a single location were elevated by approximately a factor of 2 during the summer months. An assessment of the expected doses to members of the public from marine consumption pathways is made. (author).

Elimination of ghost markers during dual sensor-based infrared tracking of multiple individual reflective markers

International Nuclear Information System (INIS)

Stroian, G.; Falco, T.; Seuntjens, J.P.

2004-01-01

The accuracy of dose delivery in radiotherapy is affected by the uncertainty in tumor localization. Motion of internal anatomy due to physiological processes such as respiration may lead to significant displacements which compromise tumor coverage and generate irradiation of healthy tissue. Real-time tracking with infrared-based systems is often used for tracking thoracic motion in radiation therapy. We studied the origin of ghost markers ('crosstalk') which may appear during dual sensor-based infrared tracking of independent reflective markers. Ghost markers occur when two or more reflective markers are coplanar with each other and with the sensors of the two camera-based infrared tracking system. Analysis shows that sensors are not points but they have a finite extent and this extent determines for each marker a 'ghost volume'. If one reflective marker enters the ghost volume of another marker, ghost markers will be reported by the tracking system; if the reflective markers belong to a surface their 'ghost volume' is reduced to a 'ghost surface' (ghost zone). Appearance of ghost markers is predicted for markers taped on the torso of an anthropomorphic phantom. This study illustrates the dependence of the shape, extent, and location of the ghost zones on the shape of the anthropomorphic phantom, the angle of view of the tracking system, and the distance between the tracking system and the anthropomorphic phantom. It is concluded that the appearance of ghost markers can be avoided by positioning the markers outside the ghost zones of the other markers. However, if this is not possible and the initial marker configuration is ghost marker-free, ghost markers can be eliminated during real-time tracking by virtue of the fact that they appear in the coordinate data sequence only temporarily

Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

Science.gov (United States)

Griffiths, Andrew M; Sims, David W; Cotterell, Stephen P; El Nagar, Aliya; Ellis, Jim R; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C; Pade, Nicolas G; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J; Genner, Martin J

2010-05-22

Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region.

Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis)

Science.gov (United States)

Griffiths, Andrew M.; Sims, David W.; Cotterell, Stephen P.; El Nagar, Aliya; Ellis, Jim R.; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C.; Pade, Nicolas G.; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J.; Genner, Martin J.

2010-01-01

Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region. PMID:20106849

Population data on D6S2879 and D6S2806 markers located at HLA-DRB1 region in the Iranians: Identifying the signatures of balancing and directional selection

Directory of Open Access Journals (Sweden)

Mansoureh Tajadod

2011-12-01

Full Text Available In this study, the genetic diversity and neutrality test for the MHC microsatellite loci, D6S2879 and D6S2806, located within the HLA-DRB1 gene region, were investigated. The genotyping data from 73 unrelated individuals were analyzed for Shannon index, the effective allele number of the markers and neutrality test by use of PyPop and Popgene32 programs. The Shannon index for D6S2879 and D6S2806 markers in the studied population was 1.0372 and 0.8601, respectively. The Fnd value computed for D6S2879 and D6S2806 markers were also estimated -0.8449 and 0.9904, respectively. The results obtained from Ewens-Watterson test indicated that D6S2879 and D6S2806 markers were under balancing and directional selection in the Iranian populations, respectively. The data suggested the presence of a selection force on HLA-DRB1 gene region in the Iranian populations.

Fatty acid biomarkers: validation of food web and trophic markers using C-13-labelled fatty acids in juvenile sandeel ( Ammodytes tobianus )

DEFF Research Database (Denmark)

Dalsgaard, Anne Johanne Tang; St. John, Michael

2004-01-01

A key issue in marine science is parameterizing trophic interactions in marine food webs, thereby developing an understanding of the importance of top-down and bottom-up controls on populations of key trophic players. This study validates the utility of fatty acid food web and trophic markers usi......), respectively. Lack of temporal trends in nonlabelled fatty acids confirmed the conservative incorporation of labelled fatty acids by the fish.......A key issue in marine science is parameterizing trophic interactions in marine food webs, thereby developing an understanding of the importance of top-down and bottom-up controls on populations of key trophic players. This study validates the utility of fatty acid food web and trophic markers using...... C-13-labelled fatty acids to verify the conservative incorporation of fatty acid tracers by juvenile sandeel (Ammodytes tobianus) and assess their uptake, clearance, and metabolic turnover rates. Juvenile sandeel were fed for 16 days in the laboratory on a formulated diet enriched in (13)C16...

20th-century glacial-marine sedimentation in Vitus Lake, Bering Glacier, Alaska, U.S.A.

Science.gov (United States)

Molnia, B.F.; Post, A.; Carlson, P.R.

1996-01-01

Vitus Lake, the ice-marginal basin at the southeastern edge of Bering Glacier, Alaska, U.S.A., is a site of modern, rapid, glacial-marine sedimentation. Rather than being a fresh-water lake, Vitus Lake is a tidally influenced, marine to brackish embayment connected to the Pacific Ocean by an inlet, the Seal River. Vitus Lake consists of five deep bedrock basins, separated by interbasinal highs. Glacial erosion has cut these basins as much as 250 m below sea level. High-resolution seismic reflection surveys conducted in 1991 and 1993 of four of Vitus Lake's basins reveal a complex, variable three-component acoustic stratigraphy. Although not fully sampled, the stratigraphy is inferred to be primarily glacial-marine units of (1) basal contorted and deformed glacial-marine and glacial sediments deposited by basal ice-contact processes and submarine mass-wasting; (2) acoustically well-stratified glacial-marine sediment, which unconformably overlies the basal unit and which grades upward into (3) acoustically transparent or nearly transparent glacial-marine sediment. Maximum thicknesses of conformable glacial-marine sediment exceed 100 m. All of the acoustically transparent and stratified deposits in Vitus Lake are modern in age, having accumulated between 1967 and 1993. The basins where these three-part sequences of "present-day" glacial-marine sediment are accumulating are themselves cut into older sequences of stratified glacial and glacial-marine deposits. These older units outcrop on the islands in Vitus Lake. In 1967, as the result of a major surge, glacier ice completely filled all five basins. Subsequent terminus retreat, which continued through August 1993, exposed these basins, providing new locations for glacial-marine sediment accumulation. A correlation of sediment thicknesses measured from seismic profiles at specific locations within the basins, with the year that each location became ice-free, shows that the sediment accumulation at some locations

Global Priorities for Marine Biodiversity Conservation

Science.gov (United States)

Selig, Elizabeth R.; Turner, Will R.; Troëng, Sebastian; Wallace, Bryan P.; Halpern, Benjamin S.; Kaschner, Kristin; Lascelles, Ben G.; Carpenter, Kent E.; Mittermeier, Russell A.

2014-01-01

In recent decades, many marine populations have experienced major declines in abundance, but we still know little about where management interventions may help protect the highest levels of marine biodiversity. We used modeled spatial distribution data for nearly 12,500 species to quantify global patterns of species richness and two measures of endemism. By combining these data with spatial information on cumulative human impacts, we identified priority areas where marine biodiversity is most and least impacted by human activities, both within Exclusive Economic Zones (EEZs) and Areas Beyond National Jurisdiction (ABNJ). Our analyses highlighted places that are both accepted priorities for marine conservation like the Coral Triangle, as well as less well-known locations in the southwest Indian Ocean, western Pacific Ocean, Arctic and Antarctic Oceans, and within semi-enclosed seas like the Mediterranean and Baltic Seas. Within highly impacted priority areas, climate and fishing were the biggest stressors. Although new priorities may arise as we continue to improve marine species range datasets, results from this work are an essential first step in guiding limited resources to regions where investment could best sustain marine biodiversity. PMID:24416151

Global priorities for marine biodiversity conservation.

Directory of Open Access Journals (Sweden)

Elizabeth R Selig

Full Text Available In recent decades, many marine populations have experienced major declines in abundance, but we still know little about where management interventions may help protect the highest levels of marine biodiversity. We used modeled spatial distribution data for nearly 12,500 species to quantify global patterns of species richness and two measures of endemism. By combining these data with spatial information on cumulative human impacts, we identified priority areas where marine biodiversity is most and least impacted by human activities, both within Exclusive Economic Zones (EEZs and Areas Beyond National Jurisdiction (ABNJ. Our analyses highlighted places that are both accepted priorities for marine conservation like the Coral Triangle, as well as less well-known locations in the southwest Indian Ocean, western Pacific Ocean, Arctic and Antarctic Oceans, and within semi-enclosed seas like the Mediterranean and Baltic Seas. Within highly impacted priority areas, climate and fishing were the biggest stressors. Although new priorities may arise as we continue to improve marine species range datasets, results from this work are an essential first step in guiding limited resources to regions where investment could best sustain marine biodiversity.

Single-tube tetradecaplex panel of highly polymorphic microsatellite markers hemophilia A.

Science.gov (United States)

Zhao, M; Chen, M; Tan, A S C; Cheah, F S H; Mathew, J; Wong, P C; Chong, S S

2017-07-01

Essentials Preimplantation genetic diagnosis (PGD) of severe hemophilia A relies on linkage analysis. Simultaneous multi-marker screening can simplify selection of informative markers in a couple. We developed a single-tube tetradecaplex panel of polymorphic markers for hemophilia A PGD use. Informative markers can be used for linkage analysis alone or combined with mutation detection. Background It is currently not possible to perform single-cell preimplantation genetic diagnosis (PGD) to directly detect the common inversion mutations of the factor VIII (F8) gene responsible for severe hemophilia A (HEMA). As such, PGD for such inversion carriers relies on indirect analysis of linked polymorphic markers. Objectives To simplify linkage-based PGD of HEMA, we aimed to develop a panel of highly polymorphic microsatellite markers located near the F8 gene that could be simultaneously genotyped in a multiplex-PCR reaction. Methods We assessed the polymorphism of various microsatellite markers located ≤ 1 Mb from F8 in 177 female subjects. Highly polymorphic markers were selected for co-amplification with the AMELX/Y indel dimorphism in a single-tube reaction. Results Thirteen microsatellite markers located within 0.6 Mb of F8 were successfully co-amplified with AMELX/Y in a single-tube reaction. Observed heterozygosities of component markers ranged from 0.43 to 0.84, and ∼70-80% of individuals were heterozygous for ≥ 5 markers. The tetradecaplex panel successfully identified fully informative markers in a couple interested in PGD for HEMA because of an intragenic F8 point mutation, with haplotype phasing established through a carrier daughter. In-vitro fertilization (IVF)-PGD involved single-tube co-amplification of fully informative markers with AMELX/Y and the mutation-containing F8 amplicon, followed by microsatellite analysis and amplicon mutation-site minisequencing analysis. Conclusions The single-tube multiplex-PCR format of this highly polymorphic

Chimpanzees (Pan troglodytes) use markers to monitor the movement of a hidden item.

Science.gov (United States)

Beran, Michael J; Beran, Mary M; Menzel, Charles R

2005-10-01

Four chimpanzees (Pan troglodytes) monitored the movement of hidden items in arrays of opaque cups. A chocolate candy was hidden in an array of four cups and temporarily presented paper markers indicated the location of the candy (which otherwise was not visible). These markers were either non-symbolic or symbolic (lexigram) stimuli that in other contexts acted as a label for the hidden candy, and the array was either rotated 180 degrees after the marker was removed or the array remained in the same location. For three of four chimpanzees, performance was better than chance in all conditions and there was no effect of the type of marker. These experiments indicate that chimpanzees can track the movement of a hidden item in an array of identical cups even when they never see the item itself, but only see a temporarily presented marker for the location of that item. However, there was no benefit to the use of symbolic as opposed to non-symbolic stimuli in this performance.

Databases of the marine metagenomics

KAUST Repository

Mineta, Katsuhiko

2015-10-28

The metagenomic data obtained from marine environments is significantly useful for understanding marine microbial communities. In comparison with the conventional amplicon-based approach of metagenomics, the recent shotgun sequencing-based approach has become a powerful tool that provides an efficient way of grasping a diversity of the entire microbial community at a sampling point in the sea. However, this approach accelerates accumulation of the metagenome data as well as increase of data complexity. Moreover, when metagenomic approach is used for monitoring a time change of marine environments at multiple locations of the seawater, accumulation of metagenomics data will become tremendous with an enormous speed. Because this kind of situation has started becoming of reality at many marine research institutions and stations all over the world, it looks obvious that the data management and analysis will be confronted by the so-called Big Data issues such as how the database can be constructed in an efficient way and how useful knowledge should be extracted from a vast amount of the data. In this review, we summarize the outline of all the major databases of marine metagenome that are currently publically available, noting that database exclusively on marine metagenome is none but the number of metagenome databases including marine metagenome data are six, unexpectedly still small. We also extend our explanation to the databases, as reference database we call, that will be useful for constructing a marine metagenome database as well as complementing important information with the database. Then, we would point out a number of challenges to be conquered in constructing the marine metagenome database.

Location and description of transects for ecological studies in floodplain forests of the lower Suwannee River, Florida

Science.gov (United States)

Lewis, L.J.; Light, H.M.; Darst, M.R.

2001-01-01

Twelve transects were established in floodplain forests along the lower Suwannee River, Florida, as the principal data collection sites for a comprehensive study conducted by the U.S. Geological Survey and the Suwannee River Water Management District from 1996 to 2001. Data collected along the 12 transects included hydrologic conditions, land-surface elevations, soils, and vegetation of floodplain forests in relation to river flow. Transect locations are marked in the field with permanent markers at approximately 30 meter intervals. Detailed descriptions of the 12 transects and their locations are provided so that they can be used for future ecological studies. Descriptions of the transects include contact information necessary for access to the property on which the transects are located, maps showing transect locations and routes from the nearest city or major road, small scale maps of each transect showing marker locations, latitude and longitude of each marker, compass bearings of each transect line and graphs showing land-surface elevations of the transect with marker locations.

Brittany. Brest tackles marine energy

International Nuclear Information System (INIS)

Du Guerny, Stanislas

2015-01-01

This article illustrates how the Brittany region finances the extension and diversification of the Brest harbour so that it will be able get new contracts and to enable the setting up of plants related to marine energies. Some local actors are already committed in this sector, notably DCNS with the first submerged marine current power installation. Moreover, a contract has been signed between the region and DCNS to develop floating offshore wind energy. Some important local actors are indicated (an existing and a projected techno-pole, Alcatel-Lucent, a research centre). They are located in Rennes, Saint-Malo, Lannion, Lorient or Fougeres

Perspectives on marine zooplankton lipids

DEFF Research Database (Denmark)

Kattner, G.; Hagen, W.; Lee, R.F.

2007-01-01

We developed new perspectives to identify important questions and to propose approaches for future research on marine food web lipids. They were related to (i) structure and function of lipids, (ii) lipid changes during critical life phases, (iii) trophic marker lipids, and (iv) potential impact...... of climate change. The first addresses the role of lipids in membranes, storage lipids, and buoyancy with the following key question: How are the properties of membranes and deposits affected by the various types of lipids? The second deals with the importance of various types of lipids during reproduction......, development, and resting phases and addresses the role of the different storage lipids during growth and dormancy. The third relates to trophic marker lipids, which are an important tool to follow lipid and energy transfer through the food web. The central question is how can fatty acids be used to identify...

Marine Socio-Environmental Covariates: queryable global layers of environmental and anthropogenic variables for marine ecosystem studies.

Science.gov (United States)

Yeager, Lauren A; Marchand, Philippe; Gill, David A; Baum, Julia K; McPherson, Jana M

2017-07-01

Biophysical conditions, including climate, environmental stress, and habitat availability, are key drivers of many ecological processes (e.g., community assembly and productivity) and associated ecosystem services (e.g., carbon sequestration and fishery production). Furthermore, anthropogenic impacts such as coastal development and fishing can have drastic effects on the structure and function of marine ecosystems. Scientists need to account for environmental variation and human impacts to accurately model, manage, and conserve marine ecosystems. Although there are many types of environmental data available from global remote sensing and open-source data products, some are inaccessible to potential end-users because they exist as global layers in high temporal and spatial resolutions which require considerable computational power to process. Additionally, coastal locations often suffer from missing data or data quality issues which limit the utility of some global marine products for coastal sites. Herein we present the Marine Socio-Environmental Covariates dataset for the global oceans, which consists of environmental and anthropogenic variables summarized in ecologically relevant ways. The dataset includes four sets of environmental variables related to biophysical conditions (net primary productivity models corrected for shallow-water reflectance, wave energy including sheltered-coastline corrections) and landscape context (coral reef and land cover within varying radii). We also present two sets of anthropogenic variables, human population density (within varying radii) and distance to large population center, which can serve as indicators of local human impacts. We have paired global, summarized layers available for download with an online data querying platform that allows users to extract data for specific point locations with finer control of summary statistics. In creating these global layers and online platform, we hope to make the data accessible to a

Intersection tests for single marker QTL analysis can be more powerful than two marker QTL analysis

Directory of Open Access Journals (Sweden)

Doerge RW

2003-06-01

Full Text Available Abstract Background It has been reported in the quantitative trait locus (QTL literature that when testing for QTL location and effect, the statistical power supporting methodologies based on two markers and their estimated genetic map is higher than for the genetic map independent methodologies known as single marker analyses. Close examination of these reports reveals that the two marker approaches are more powerful than single marker analyses only in certain cases. Simulation studies are a commonly used tool to determine the behavior of test statistics under known conditions. We conducted a simulation study to assess the general behavior of an intersection test and a two marker test under a variety of conditions. The study was designed to reveal whether two marker tests are always more powerful than intersection tests, or whether there are cases when an intersection test may outperform the two marker approach. We present a reanalysis of a data set from a QTL study of ovariole number in Drosophila melanogaster. Results Our simulation study results show that there are situations where the single marker intersection test equals or outperforms the two marker test. The intersection test and the two marker test identify overlapping regions in the reanalysis of the Drosophila melanogaster data. The region identified is consistent with a regression based interval mapping analysis. Conclusion We find that the intersection test is appropriate for analysis of QTL data. This approach has the advantage of simplicity and for certain situations supplies equivalent or more powerful results than a comparable two marker test.

The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years.

Science.gov (United States)

Wang, Yu; Mette, Michael Florian; Miedaner, Thomas; Gottwald, Marlen; Wilde, Peer; Reif, Jochen C; Zhao, Yusheng

2014-07-04

Marker-assisted selection (MAS) and genomic selection (GS) based on genome-wide marker data provide powerful tools to predict the genotypic value of selection material in plant breeding. However, case-to-case optimization of these approaches is required to achieve maximum accuracy of prediction with reasonable input. Based on extended field evaluation data for grain yield, plant height, starch content and total pentosan content of elite hybrid rye derived from testcrosses involving two bi-parental populations that were genotyped with 1048 molecular markers, we compared the accuracy of prediction of MAS and GS in a cross-validation approach. MAS delivered generally lower and in addition potentially over-estimated accuracies of prediction than GS by ridge regression best linear unbiased prediction (RR-BLUP). The grade of relatedness of the plant material included in the estimation and test sets clearly affected the accuracy of prediction of GS. Within each of the two bi-parental populations, accuracies differed depending on the relatedness of the respective parental lines. Across populations, accuracy increased when both populations contributed to estimation and test set. In contrast, accuracy of prediction based on an estimation set from one population to a test set from the other population was low despite that the two bi-parental segregating populations under scrutiny shared one parental line. Limiting the number of locations or years in field testing reduced the accuracy of prediction of GS equally, supporting the view that to establish robust GS calibration models a sufficient number of test locations is of similar importance as extended testing for more than one year. In hybrid rye, genomic selection is superior to marker-assisted selection. However, it achieves high accuracies of prediction only for selection candidates closely related to the plant material evaluated in field trials, resulting in a rather pessimistic prognosis for distantly related material

EasyClone-MarkerFree

DEFF Research Database (Denmark)

Fabre, Mathew Malcolm Jessop; Jakociunas, Tadas; Stovicek, Vratislav

2016-01-01

Clone-MarkerFree. The integration of linearized expression cassettes into defined genomic loci is facilitated by CRISPR/Cas9. Cas9 is recruited to the chromosomal location by specific guide RNAs (gRNAs) expressed from a set of gRNA helper vectors. Using our genome engineering vector suite, single and triple insertions are obtained...

Impact of season and location on the natural radioactivity in marine macroalgae (Gracilaria edulis) of coastal Tamil Nadu, India

International Nuclear Information System (INIS)

Saroja, P.M.; Raj, G.A.G.; Selvan, K.E.

2012-01-01

Gracilaria edulis, an edible red marine macro algae from three high background radiation areas (Arockiapuram, Kadiapattinam and Kurumpanai) on the southwest coast of Tamil Nadu, and one low background radiation area (Mandapam) on the southeast coast of Tamil Nadu, in India, were studied for variations in average gross alpha and beta radiation activities. Significant variations in average gross beta activities were observed while alpha activities showed only marginal variation. The average gross alpha activity was recorded high (61.51 Bq kg -1 ) during the post southwest monsoon season, while it recorded lowest (25.48 Bq kg -1 ) during the post northeast monsoon season. Average gross beta activity varied between seasons with the lowest level (211.55 Bq Kg -1 ) during post southwest monsoon season and the highest (413.33 Bq kg -1 ) during post northeast monsoon season. Among the four locations, the gross alpha activity was high (70.95 ± 26.74 Bq Kg -1 ) in Arockiapuram and low (18.74 ± 6.32 Bq Kg -1 ) in Mandapam, while the gross beta activity was high (442.25 ± 168.53 Bq Kg -1 ) in Kurumpanai and low (158.63 ± 34.37 Bq Kg -1 ) in Mandapam. Average gross alpha activity in G. edulis was found significantly varying in terms of locations, while average gross beta activity for the same species recorded significant seasonal variation. (author)

Potential benefits and shortcomings of marine protected areas for small seabirds revealed using miniature tags

Directory of Open Access Journals (Sweden)

Sara M Maxwell

2016-12-01

Full Text Available Marine protected areas are considered important tools for protecting marine biodiversity, and animal tracking is a key way to determine if boundaries are effectively placed for protection of key marine species, including seabirds. We tracked chick-rearing brown noddies (Anous stolidus from the Dry Tortugas National Park in Florida USA in 2016 using 1.8 g Nanofix GPS tags (n = 10, making this the first time this species has ever been tracked. We determined movement parameters, such as flight speed, distance traveled and home range, and how birds used a complex of marine protected areas including the Dry Tortugas National Park which is largely no-take (i.e., no fishing or extraction permitted, and the Florida Keys National Marine Sanctuary, of which two Ecological Reserves totaling 517.9 km2 are no-take. Birds remained largely within marine protected areas, with 91.3% of birds’ locations and 58.8% of the birds’ total home range occurring within the MPAs, and 79.2% of birds’ locations and 18.2% of the birds’ total home range within no-take areas. However areas of probable foraging, indicated by locations where birds had high-residence time, were found within one of the MPAs only 64.7% of the time, and only 6.7% of those locations were in no-take areas. Birds traveled a mean straight line distance from the colony of 37.5 km, primarily using the region to the southwest of the colony where the shelf break and Loop Current occur. High-residence-time locations were found in areas of significantly higher sea surface temperature and closer to the shelf break than low residency locations. A sea surface temperature front occurs near the shelf edge, likely indicative of where Sargassum seaweed is entrained, providing habitat for forage species. Much of this region, however, falls outside the boundaries of the marine protected areas, and brown noddies and other species breeding in the Dry Tortugas may interact with fisheries via resource competition

76 FR 1381 - Special Local Regulations for Marine Events; Potomac River, Charles County, MD

Science.gov (United States)

2011-01-10

...-AA08 Special Local Regulations for Marine Events; Potomac River, Charles County, MD AGENCY: Coast Guard... Regulations for Marine Events; Potomac River, Charles County, MD. (a) Regulated area. The following location... local regulations during the ``Potomac River Sharkfest Swim'' amateur swim, a marine event to be held on...

75 FR 952 - Draft Marine Sanitation Device Discharge Regulations for the Florida Keys National Marine...

Science.gov (United States)

2010-01-07

... locations: January 21, 2010: Marathon Garden Club, 5270 Overseas Hwy (Mile Marker 50), Marathon, FL 33050... cards and verbal comments will be recorded and transcribed. Dated: December 29, 2009. Daniel J. Basta...

Modeling Marine Electromagnetic Survey with Radial Basis Function Networks

Directory of Open Access Journals (Sweden)

Agus Arif

2014-11-01

Full Text Available A marine electromagnetic survey is an engineering endeavour to discover the location and dimension of a hydrocarbon layer under an ocean floor. In this kind of survey, an array of electric and magnetic receivers are located on the sea floor and record the scattered, refracted and reflected electromagnetic wave, which has been transmitted by an electric dipole antenna towed by a vessel. The data recorded in receivers must be processed and further analysed to estimate the hydrocarbon location and dimension. To conduct those analyses successfuly, a radial basis function (RBF network could be employed to become a forward model of the input-output relationship of the data from a marine electromagnetic survey. This type of neural networks is working based on distances between its inputs and predetermined centres of some basis functions. A previous research had been conducted to model the same marine electromagnetic survey using another type of neural networks, which is a multi layer perceptron (MLP network. By comparing their validation and training performances (mean-squared errors and correlation coefficients, it is concluded that, in this case, the MLP network is comparatively better than the RBF network[1].[1] This manuscript is an extended version of our previous paper, entitled Radial Basis Function Networks for Modeling Marine Electromagnetic Survey, which had been presented on 2011 International Conference on Electrical Engineering and Informatics, 17-19 July 2011, Bandung, Indonesia.

Understanding sources, sinks, and transport of marine debris

Science.gov (United States)

Law, Kara Lavender; Maximenko, Nikolai

2011-07-01

Fifth International Marine Debris Conference: Hydrodynamics of Marine Debris; Honolulu, Hawaii, 20 March 2011; Ocean pollution in the form of marine debris, especially plastic debris, has received increasing public and media attention in recent years through striking but frequently inaccurate descriptions of “garbage patches.” Marine debris is composed of all manufactured materials, including glass, metal, paper, fibers, and plastic, that have been deliberately dumped or that accidentally entered the marine environment. Marine debris is most visible on beaches, but it has been observed in all oceans and in such remote locations as on the deep seabed and floating in the middle of subtropical ocean gyres. While many initiatives have been developed to solve this pollution problem through prevention and cleanup efforts, there is relatively little scientific information available to assess the current status of the problem or to provide metrics to gauge the success of remediation measures. With this in mind, a full-day workshop entitled “Hydrodynamics of Marine Debris” was convened at the Fifth International Marine Debris Conference in Hawaii, bringing together observational scientists and oceanographic modelers to outline the steps necessary to quantify the major sources and sinks of marine debris and the pathways between them. The ultimate goal in integrating the two approaches of study is to quantify the basinscale and global inventory of marine debris by closing the associated mass budgets.

Global coordination and standardisation in marine biodiversity through the World Register of Marine Species (WoRMS and related databases.

Directory of Open Access Journals (Sweden)

Mark J Costello

Full Text Available The World Register of Marine Species is an over 90% complete open-access inventory of all marine species names. Here we illustrate the scale of the problems with species names, synonyms, and their classification, and describe how WoRMS publishes online quality assured information on marine species. Within WoRMS, over 100 global, 12 regional and 4 thematic species databases are integrated with a common taxonomy. Over 240 editors from 133 institutions and 31 countries manage the content. To avoid duplication of effort, content is exchanged with 10 external databases. At present WoRMS contains 460,000 taxonomic names (from Kingdom to subspecies, 368,000 species level combinations of which 215,000 are currently accepted marine species names, and 26,000 related but non-marine species. Associated information includes 150,000 literature sources, 20,000 images, and locations of 44,000 specimens. Usage has grown linearly since its launch in 2007, with about 600,000 unique visitors to the website in 2011, and at least 90 organisations from 12 countries using WoRMS for their data management. By providing easy access to expert-validated content, WoRMS improves quality control in the use of species names, with consequent benefits to taxonomy, ecology, conservation and marine biodiversity research and management. The service manages information on species names that would otherwise be overly costly for individuals, and thus minimises errors in the application of nomenclature standards. WoRMS' content is expanding to include host-parasite relationships, additional literature sources, locations of specimens, images, distribution range, ecological, and biological data. Species are being categorised as introduced (alien, invasive, of conservation importance, and on other attributes. These developments have a multiplier effect on its potential as a resource for biodiversity research and management. As a consequence of WoRMS, we are witnessing improved

Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases

Science.gov (United States)

Bouchet, Philippe; Boxshall, Geoff; Fauchald, Kristian; Gordon, Dennis; Hoeksema, Bert W.; Poore, Gary C. B.; van Soest, Rob W. M.; Stöhr, Sabine; Walter, T. Chad; Vanhoorne, Bart; Decock, Wim

2013-01-01

The World Register of Marine Species is an over 90% complete open-access inventory of all marine species names. Here we illustrate the scale of the problems with species names, synonyms, and their classification, and describe how WoRMS publishes online quality assured information on marine species. Within WoRMS, over 100 global, 12 regional and 4 thematic species databases are integrated with a common taxonomy. Over 240 editors from 133 institutions and 31 countries manage the content. To avoid duplication of effort, content is exchanged with 10 external databases. At present WoRMS contains 460,000 taxonomic names (from Kingdom to subspecies), 368,000 species level combinations of which 215,000 are currently accepted marine species names, and 26,000 related but non-marine species. Associated information includes 150,000 literature sources, 20,000 images, and locations of 44,000 specimens. Usage has grown linearly since its launch in 2007, with about 600,000 unique visitors to the website in 2011, and at least 90 organisations from 12 countries using WoRMS for their data management. By providing easy access to expert-validated content, WoRMS improves quality control in the use of species names, with consequent benefits to taxonomy, ecology, conservation and marine biodiversity research and management. The service manages information on species names that would otherwise be overly costly for individuals, and thus minimises errors in the application of nomenclature standards. WoRMS' content is expanding to include host-parasite relationships, additional literature sources, locations of specimens, images, distribution range, ecological, and biological data. Species are being categorised as introduced (alien, invasive), of conservation importance, and on other attributes. These developments have a multiplier effect on its potential as a resource for biodiversity research and management. As a consequence of WoRMS, we are witnessing improved communication within the

Location of Sternal Fractures as a Possible Marker for Associated Injuries

Directory of Open Access Journals (Sweden)

Max J. Scheyerer

2013-01-01

Full Text Available Introduction. Sternal fractures often occur together with serious and life-threatening additional injuries. This retrospective study was designed to assess concomitant injuries and develop a correlation between fracture location and the severity of injury. Methods. All patients ( diagnosed with a fracture of the sternum by means of a CT scan were analysed with respect to accident circumstances, fracture morphology and topography, associated injuries, and outcome. Results. Isolated sternal fractures occurred in 9%. In all other admissions, concomitant injuries were diagnosed: mainly rip fractures (64%, injury to the head (48%, the thoracic spine (38%, lumbar spine (27%, and cervical spine (22%. Predominant fracture location was the manubrium sterni. In these locations, the observed mean ISS was the highest. They were strongly associated with thoracic spine and other chest injuries. Furthermore, the incidence of head injuries was significantly higher. ICU admission was significantly higher in patients with manubrium sterni fractures. Conclusion. Sternal fractures are frequently associated with other injuries. It appears that the fracture location can provide important information regarding concomitant injuries. In particular, in fractures of manubrium sterni, the need for further detailed clinical and radiologic workup is necessary to detect the frequently associated injuries and reduce the increased mortality.

46 CFR 58.60-5 - Industrial systems: Locations.

Science.gov (United States)

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Industrial systems: Locations. 58.60-5 Section 58.60-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY AND RELATED SYSTEMS Industrial Systems and Components on Mobile Offshore Drilling Units (MODU...

Development and characterization of new polymorphic microsatellite markers in four sea anemones: Entacmaea quadricolor, Heteractis magnifica, Stichodactyla gigantea, and Stichodactyla mertensii

KAUST Repository

Gatins, Remy

2016-10-08

Relatively few studies have investigated the genetic population structure of sea anemones. This is particularly true for sea anemones that host some of the most iconic fishes on coral reefs, the anemonefishes. One of the main reasons for this knowledge gap is the lack of appropriate genetic markers. We developed and characterized a total of 47 novel polymorphic microsatellite markers for four host sea anemone species from the Indo-Pacific: Entacmaea quadricolor (n = 16 microsatellite markers), Heteractis magnifica (n = 8), Stichodactyla mertensii (n = 13), and Stichodactyla gigantea (n = 10). Here, we report genetic diversity statistics from two different sampling locations for each anemone species. Overall, we found that most markers were highly polymorphic. On average, we found a mean of seven alleles per locus. Observed and expected heterozygosities displayed high variation among loci, ranging from 0.033 to 0.980 and from 0.038 to 0.927, respectively. Only four loci showed deviations of Hardy–Weinberg equilibrium in both populations and were identified as having null alleles. Additionally, two pairs of loci were identified to be in linkage disequilibrium in only one population. Host anemones are highly sought after in the marine aquarium trade and are susceptible to thermal bleaching. Although most studies focus on their obligate symbionts (the anemonefish), genetic analyses of host sea anemones can expand our understanding of the biology, connectivity, and population structure of these organisms and potentially help develop conservation strategies that will aid both the host and its symbionts.

Development and characterization of new polymorphic microsatellite markers in four sea anemones: Entacmaea quadricolor, Heteractis magnifica, Stichodactyla gigantea, and Stichodactyla mertensii

KAUST Repository

Gatins, Remy; Saenz-Agudelo, Pablo; Scott, Anna; Berumen, Michael L.

2016-01-01

Relatively few studies have investigated the genetic population structure of sea anemones. This is particularly true for sea anemones that host some of the most iconic fishes on coral reefs, the anemonefishes. One of the main reasons for this knowledge gap is the lack of appropriate genetic markers. We developed and characterized a total of 47 novel polymorphic microsatellite markers for four host sea anemone species from the Indo-Pacific: Entacmaea quadricolor (n = 16 microsatellite markers), Heteractis magnifica (n = 8), Stichodactyla mertensii (n = 13), and Stichodactyla gigantea (n = 10). Here, we report genetic diversity statistics from two different sampling locations for each anemone species. Overall, we found that most markers were highly polymorphic. On average, we found a mean of seven alleles per locus. Observed and expected heterozygosities displayed high variation among loci, ranging from 0.033 to 0.980 and from 0.038 to 0.927, respectively. Only four loci showed deviations of Hardy–Weinberg equilibrium in both populations and were identified as having null alleles. Additionally, two pairs of loci were identified to be in linkage disequilibrium in only one population. Host anemones are highly sought after in the marine aquarium trade and are susceptible to thermal bleaching. Although most studies focus on their obligate symbionts (the anemonefish), genetic analyses of host sea anemones can expand our understanding of the biology, connectivity, and population structure of these organisms and potentially help develop conservation strategies that will aid both the host and its symbionts.

Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations.

Science.gov (United States)

Mäkinen, H S; Cano, J M; Merilä, J

2008-08-01

Natural selection is expected to leave an imprint on the neutral polymorphisms at the adjacent genomic regions of a selected gene. While directional selection tends to reduce within-population genetic diversity and increase among-population differentiation, the reverse is expected under balancing selection. To identify targets of natural selection in the three-spined stickleback (Gasterosteus aculeatus) genome, 103 microsatellite and two indel markers including expressed sequence tags (EST) and quantitative trait loci (QTL)-associated loci, were genotyped in four freshwater and three marine populations. The results indicated that a high proportion of loci (14.7%) might be affected by balancing selection and a lower proportion (2.8%) by directional selection. The strongest signatures of directional selection were detected in a microsatellite locus and two indel markers located in the intronic regions of the Eda-gene coding for the number of lateral plates. Yet, other microsatellite loci previously found to be informative in QTL-mapping studies revealed no signatures of selection. Two novel microsatellite loci (Stn12 and Stn90) located in chromosomes I and VIII, respectively, showed signals of directional selection and might be linked to genomic regions containing gene(s) important for adaptive divergence. Although the coverage of the total genomic content was relatively low, the predominance of balancing selection signals is in agreement with the contention that balancing, rather than directional selection is the predominant mode of selection in the wild.

From verbal prefixes to direction/result markers in Romance

Directory of Open Access Journals (Sweden)

Patrizia Cordin

2011-12-01

Full Text Available In this paper I analyze verb-locative constructions in Romance. Even though not allowed in standard Romance languages, which have maintained and codified the classical Latin prefix system, these constructions are widely attested in non standard varieties, that are scarcely (or not at all regularized. In this paper I deal in particular with a northern Italian variety, Trentino, where locatives, combining with some classes of verbs (unaccusative verbs and transitive activity verbs can express not only concrete direction and metaphorical direction, but also aspect (the result of an activity or the progress of a process; in other words, they can express an abstract, more grammaticalized feature of direction. In fact, Trentino verb-locative constructions can express a specific phase of the development of an event, often the result (end-point of an activity, or the start-point, or the progress, or the intensity of the activity itself. I argue that in Trentino (and in other similar dialectal varieties locatives can function as grammatical markers both for arguments (in combination with motion verbs and for aspect (in combination with verbs involving the feature of an abstract path. In a more general context, I note that locatives in combination of verbs function as goal/result markers in those varieties that tend to spell out markers of functional elements, frequently generating a repetition (doubling of the same feature. Finally, I compare Romance and Germanic constructions, noting that diachronic, grammatical and typological differences (with particular reference to Talmy's distinction between verb-framed languages and satellite languages confirm the independence of Romance verb-locative constructions.

78 FR 47282 - Takes of Marine Mammals Incidental to Specified Activities; Navy Research, Development, Test and...

Science.gov (United States)

2013-08-05

..., and location) and marine mammal and/or indicator presence, species, number of animals, their behavior... Marine Mammals Incidental to Specified Activities; Navy Research, Development, Test and Evaluation Activities at the Naval Surface Warfare Center Panama City Division AGENCY: National Marine Fisheries Service...

Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification

DEFF Research Database (Denmark)

Smolina, I.; Kollias, S.; Poortvliet, M.

2014-01-01

Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers t...

Location Accuracy of INS/Gravity-Integrated Navigation System on the Basis of Ocean Experiment and Simulation.

Science.gov (United States)

Wang, Hubiao; Wu, Lin; Chai, Hua; Bao, Lifeng; Wang, Yong

2017-12-20

An experiment comparing the location accuracy of gravity matching-aided navigation in the ocean and simulation is very important to evaluate the feasibility and the performance of an INS/gravity-integrated navigation system (IGNS) in underwater navigation. Based on a 1' × 1' marine gravity anomaly reference map and multi-model adaptive Kalman filtering algorithm, a matching location experiment of IGNS was conducted using data obtained using marine gravimeter. The location accuracy under actual ocean conditions was 2.83 nautical miles (n miles). Several groups of simulated data of marine gravity anomalies were obtained by establishing normally distributed random error N ( u , σ 2 ) with varying mean u and noise variance σ 2 . Thereafter, the matching location of IGNS was simulated. The results show that the changes in u had little effect on the location accuracy. However, an increase in σ 2 resulted in a significant decrease in the location accuracy. A comparison between the actual ocean experiment and the simulation along the same route demonstrated the effectiveness of the proposed simulation method and quantitative analysis results. In addition, given the gravimeter (1-2 mGal accuracy) and the reference map (resolution 1' × 1'; accuracy 3-8 mGal), location accuracy of IGNS was up to reach ~1.0-3.0 n miles in the South China Sea.

Marine pollution: Let us not forget beach sand

OpenAIRE

Galgani, Francois; Ellerbrake, Katrin; Fries, Elke; Goreux, Chantal

2011-01-01

Background: Assessing the chemical or bacterial contamination in marine waters and sediments is a very common approach to evaluate marine pollution and associated risks. However, toxicity and organic pollution of beach sands have not yet been considered, except in adjacent waters. In the present study, the toxicity and the chemical contamination of natural beach sands collected 20 m from the shoreline at two sites located on the Mediterranean Sea (Marseille and La Marana, Corsica) were studie...

Automated localization of the prostate at the time of treatment using implanted radiopaque markers: technical feasibility

International Nuclear Information System (INIS)

Balter, James M.; Kwok, L. Lam; Sandler, Howard M.; Littles, J. Fred; Bree, Robert L.; Ten Haken, Randall K.

1995-01-01

Purpose: Prostate movement is a major consideration in the formation of target volumes for conformal radiation therapy of prostate cancer. The goal of this study was to determine the technical feasibility of using implanted radiopaque markers and digital imaging to localize the prostate at the time of treatment, thus allowing for reduction of the margin required for uncertainty in target position. Methods and Materials: Radiopaque markers implanted around the prostate prior to treatment are visible on electronic radiographs generated with a portal imager or diagnostic imaging device. The locations of the images of these markers on the digital radiographs were automatically determined by a template-matching algorithm. The coordinates of the markers were found by projecting rays through the marker locations on orthogonal radiographs using a three-dimensional (3D) point-matching algorithm. Prostate and/or patient movement was inferred from the marker displacements. Images generated from known movements of a phantom with implanted markers were tested with this algorithm. Locations of markers from daily images of patients with implanted markers were determined by both manual and automatic techniques to determine the efficacy of automated localization on typical clinical images. Results: Prostate movements can be automatically detected in a phantom using low-energy photons within 30 s after image acquisition and with a precision of better than 1 mm in translation and 1 deg. in rotation (indistinguishable from the uncertainty in measuring precision). Conclusion: The studies show that on-line repositioning of the patient based on localization of the markers at the time of treatment is feasible, and may reduce the uncertainty in prostate location when combined with practical on-line repositioning techniques

The effect of tumor location and respiratory function on tumor movement estimated by real-time tracking radiotherapy (RTRT) system

International Nuclear Information System (INIS)

Onimaru, Rikiya; Shirato, Hiroki; Fujino, Masaharu; Suzuki, Keishiro; Yamazaki, Kouichi; Nishimura, Masaharu; Dosaka-Akita, Hirotoshi; Miyasaka, Kazuo

2005-01-01

Purpose: The effects of tumor location and pulmonary function on the motion of fiducial markers near lung tumors were evaluated to deduce simple guidelines for determining the internal margin in radiotherapy without fiducial markers. Methods and Materials: Pooled data collected by a real-time tumor-tracking radiotherapy system on 42 markers in 39 patients were analyzed. The pulmonary functions of all patients were assessed before radiotherapy. Using chest X-ray film, the position of the marker was expressed relative to the geometry of the unilateral lung. Posterior location meant the area of the posterior half of the lung in a lateral chest X-ray film, and caudal location meant the caudal half of the chest X-ray film; these categories were determined by measuring the distance between the marker and anatomic landmarks, including the apex, costophrenic angle, midline of spinal canal, lateral, anterior, and posterior boundary of the lung. Results: Before the radiotherapy, 18 patients had obstructive respiratory dysfunction (ratio of forced expiratory volume in 1 s to forced vital capacity [FEV 1.0 /FVC] 1.0 /FVC and %VC were 97.0% and 66.5%, respectively. Median tumor movements in the x (left-right), y (anteroposterior), and z (craniocaudal) directions were 1.1 mm, 2.3 mm, and 5.4 mm, respectively. There was no significant correlation between respiratory function and magnitude of marker movement in any direction. Median marker movement in the z direction was 2.6 mm for the cranial location and 11.8 mm for the caudal location, respectively (p < 0.001). Median movement in the z direction was 11.8 mm for posterior location and 3.4 mm for anterior location, respectively (p < 0.01). Conclusions: Simple measurement of the relative location on plain chest X-ray film was related, but respiratory function test was not related, to the craniocaudal amplitude of the motion of the fiducial marker near lung tumors

Encyclopedic approach to Marine History of Russia

Directory of Open Access Journals (Sweden)

Andrey V. Ishin

2017-01-01

Full Text Available Marine direction of foreign policy is for Russia one of key. It is determined geographical position of the Russian state banks of which is washed plenty of Maureies. Also it is related to that considerable part of population lives on the coast of Russian Maureies, and industry, located in an off-shore bar brings, in a large contribution to the economy.Many Russian marine travelers were the discoverers of «new» earths. The contribution of the Russian scientists to the hydrophysical, geological and biological study of Maureies and Oceans is great. Russia possesses a navy, to the constituents approximately one-third of total tonnage of world VMF and one of large in the world a rybopromyslovym fleet. Transport ships under the flag of Russian Federation it is possible to meet planets in the remotest corners. In a number of areas of military shipbuilding and civil shipbuilding Russia had and continues to save priority.Enhanceable interest to the Seas and Oceans found the reflection in the fundamental Russian documents, including, in the Marine doctrine of Russian Federation, ratified Russia President in 2015. In it the value of marine spaces for the Russian state is marked. In the Marine doctrine of Russian Federation is writtenin: «The skilled providing, marine teaching and education play an important role in the increase of efficiency of marine activity. They are directed on preparation, bringing in and maintainance of skilled shots of all levels, maintenance of professionalism, marine traditions and not indifferent relation of citizens to marine history of country, serve positive presentation, propaganda and support of national marine policy, to marine activity and marine service in society».Marine direction, marine science about regions found a reflection in the publications of row of the Russian authors, devoted research of policy of Russia in such regions, as: Black Sea region, Caspian region, Arctic, and also in the series of Encyclopaedias

Transcriptome analysis in Concholepas concholepas (Gastropoda, Muricidae): mining and characterization of new genomic and molecular markers.

Science.gov (United States)

Cárdenas, Leyla; Sánchez, Roland; Gomez, Daniela; Fuenzalida, Gonzalo; Gallardo-Escárate, Cristián; Tanguy, Arnaud

2011-09-01

The marine gastropod Concholepas concholepas, locally known as the "loco", is the main target species of the benthonic Chilean fisheries. Genetic and genomic tools are necessary to study the genome of this species in order to understand the molecular basis of its development, growth, and other key traits to improve the management strategies and to identify local adaptation to prevent loss of biodiversity. Here, we use pyrosequencing technologies to generate the first transcriptomic database from adult specimens of the loco. After trimming, a total of 140,756 Expressed Sequence Tag sequences were achieved. Clustering and assembly analysis identified 19,219 contigs and 105,435 singleton sequences. BlastN analysis showed a significant identity with Expressed Sequence Tags of different gastropod species available in public databases. Similarly, BlastX results showed that only 895 out of the total 124,654 had significant hits and may represent novel genes for marine gastropods. From this database, simple sequence repeat motifs were also identified and a total of 38 primer pairs were designed and tested to assess their potential as informative markers and to investigate their cross-species amplification in different related gastropod species. This dataset represents the first publicly available 454 data for a marine gastropod endemic to the southeastern Pacific coast, providing a valuable transcriptomic resource for future efforts of gene discovery and development of functional markers in other marine gastropods. Copyright © 2011 Elsevier B.V. All rights reserved.

Influence of the number of elongated fiducial markers on the localization accuracy of the prostate

Science.gov (United States)

de Boer, Johan; de Bois, Josien; van Herk, Marcel; Sonke, Jan-Jakob

2012-10-01

Implanting fiducial markers for localization purposes has become an accepted practice in radiotherapy for prostate cancer. While many correction strategies correct for translations only, advanced correction protocols also require knowledge of the rotation of the prostate. For this purpose, typically, three or more markers are implanted. Elongated fiducial markers provide more information about their orientation than traditional round or cylindrical markers. Potentially, fewer markers are required. In this study, we evaluate the effect of the number of elongated markers on the localization accuracy of the prostate. To quantify the localization error, we developed a model that estimates, at arbitrary locations in the prostate, the registration error caused by translational and rotational uncertainties of the marker registration. Every combination of one, two and three markers was analysed for a group of 24 patients. The average registration errors at the prostate surface were 0.3-0.8 mm and 0.4-1 mm for registrations on, respectively, three markers and two markers located on different sides of the prostate. Substantial registration errors (2.0-2.2 mm) occurred at the prostate surface contralateral to the markers when two markers were implanted on the same side of the prostate or only one marker was used. In conclusion, there is no benefit in using three elongated markers: two markers accurately localize the prostate if they are implanted at some distance from each other.

76 FR 53329 - Eleventh Coast Guard District Annual Marine Events

Science.gov (United States)

2011-08-26

.... SUMMARY: The Coast Guard is updating and consolidating the list of marine events occurring annually within... not currently reflect changes in actual dates and other required information. The effects of these... location that offers a better vantage point to monitor the event. The location of the PATCOM may also be...

Marine energies. Industries are hunting costs

International Nuclear Information System (INIS)

Moragues, Manuel

2015-01-01

While a map locates various offshore hydro-kinetic energy projects at the vicinity of Scottish and French coasts, offshore wind farms (North Sea and Mediterranean sea) and also temperature differential marine plant in Martinique, this article discusses the technical and therefore economic challenges faced by the development of marine energies. They are related to the marine environment (wind, swell, currents). These strength requirements concern hydro-kinetic machines as well as floating wind turbines which must be balanced to resist to wind and swell (the Nenuphar project is evoked). Issues of performance and efficiency are present in the Nemo project in Martinique which exploits a rather small temperature differential. Other technological challenges concern the transport of this offshore production of electricity to the ground while reducing losses. For all these aspects, the article mentions the main French actors, notably DCNS, Alstom, and the start-up MPrime Innovation

Alcalóides alquilpiridínicos de esponjas marinhas Alkylpyridine alkaloids from marine sponges

Directory of Open Access Journals (Sweden)

Adaíla M. P. Almeida

1997-04-01

Full Text Available The chemistry of alkylpyridine alkaloids originating from marine sponges is comprehensively reviewed, with emphasis on their natural occurrence, methods for their isolation, spectroscopic characterization, biological activities e chemical synthesis. A likely chemotaxonomic role is suggested, as markers for sponges of the Order Haplosclerida (Demospongiae.

Lagrangian numerical techniques for modelling multicomponent flow in the presence of large viscosity contrasts: Markers-in-bulk versus Markers-in-chain

Science.gov (United States)

Mulyukova, Elvira; Dabrowski, Marcin; Steinberger, Bernhard

2015-04-01

Many problems in geodynamic applications may be described as viscous flow of chemically heterogeneous materials. Examples include subduction of compositionally stratified lithospheric plates, folding of rheologically layered rocks, and thermochemical convection of the Earth's mantle. The associated time scales are significantly shorter than that of chemical diffusion, which justifies the commonly featured phenomena in geodynamic flow models termed contact discontinuities. These are spatially sharp interfaces separating regions of different material properties. Numerical modelling of advection of fields with sharp interfaces is challenging. Typical errors include numerical diffusion, which arises due to the repeated action of numerical interpolation. Mathematically, a material field can be represented by discrete indicator functions, whose values are interpreted as logical statements (e.g. whether or not the location is occupied by a given material). Interpolation of a discrete function boils down to determining where in the intermediate node-positions one material ends, and the other begins. The numerical diffusion error thus manifests itself as an erroneous location of the material-interface. Lagrangian advection-schemes are known to be less prone to numerical diffusion errors, compared to their Eulerian counterparts. The tracer-ratio method, where Lagrangian markers are used to discretize the bulk of materials filling the entire domain, is a popular example of such methods. The Stokes equation in this case is solved on a separate, static grid, and in order to do it - material properties must be interpolated from the markers to the grid. This involves the difficulty related to interpolation of discrete fields. The material distribution, and thus material-properties like viscosity and density, seen by the grid is polluted by the interpolation error, which enters the solution of the momentum equation. Errors due to the uncertainty of interface-location can be

40 CFR 80.511 - What are the per-gallon and marker requirements that apply to NRLM diesel fuel, ECA marine fuel...

Science.gov (United States)

2010-07-01

... PROGRAMS (CONTINUED) REGULATION OF FUELS AND FUEL ADDITIVES Motor Vehicle Diesel Fuel; Nonroad, Locomotive, and Marine Diesel Fuel; and ECA Marine Fuel General Information § 80.511 What are the per-gallon and... requirements that apply to NRLM diesel fuel, ECA marine fuel, and heating oil downstream of the refiner or...

Major dust events in Europe during marine isotope stage 5 (130–74 ka: a climatic interpretation of the "markers"

Directory of Open Access Journals (Sweden)

D.-D. Rousseau

2013-09-01

Full Text Available At present, major dust storms are occurring at mid-latitudes in the Middle East and Asia, as well as at low latitudes in Northern Africa and in Australia. Western Europe, though, does not experience such dramatic climate events, except for some African dust reaching it from the Sahara. This modern situation is of particular interest, in the context of future climate projections, since the present interglacial is usually interpreted, in this context, as an analog of the warm Eemian interval. European terrestrial records show, however, major dust events during the penultimate interglacial and early glacial. These events are easily observed in loess records by their whitish-color deposits, which lie above and below dark chernozem paleosols in Central European records of Marine Isotope Stage (MIS 5 age. We describe here the base of the Dolni Vestonice (DV loess sequence, Czech Republic, as the reference of such records. The dust is deposited during intervals that are characterized by poor vegetation – manifested by high δ13C values and low magnetic susceptibility – while the fine sand and clay in the deposits shows grain sizes that are clearly different from the overlying pleniglacial loess deposits. Some of these dust events have been previously described as "Markers" or Marker Silts (MS by one of us (G. Kukla, and are dated at about 111–109 ka and 93–92 ka, with a third and last one slightly visible at about 75–73 ka. Other events correspond to the loess material of Kukla's cycles, and are described as eolian silts (ES; they are observed in the same DV sequence and are dated at about 106–105 ka, 88–86 ka, and 78.5–77 ka. These dates are determined by considering the OSL ages with their errors measured on the studied sequence, and the comparison with Greenland ice-core and European speleothem chronologies. The fine eolian deposits mentioned above, MS as well as ES, correspond to short events that lasted about 2 ka; they are

Optimising the use of marine tephrochronology in the North Atlantic: a detailed investigation of the Faroe Marine Ash Zones II, III and IV

Science.gov (United States)

Griggs, Adam J.; Davies, Siwan M.; Abbott, Peter M.; Rasmussen, Tine L.; Palmer, Adrian P.

2014-12-01

Tephrochronology is central to the INTIMATE goals for testing the degree of climatic synchroneity during abrupt climatic events that punctuated the last glacial period. Since their identification in North Atlantic marine sequences, the Faroe Marine Ash Zone II (FMAZ II), FMAZ III and FMAZ IV have received considerable attention due to their potential for high-precision synchronisation with the Greenland ice-cores. In order to optimise the use of these horizons as isochronous markers, a detailed re-investigation of their geochemical composition, sedimentology and the processes that deposited each ash zone is presented. Shard concentration profiles, geochemical homogeneity and micro-sedimentological structures are investigated for each ash zone preserved within core JM11-19PC, retrieved from the southeastern Norwegian Sea on the central North Faroe Slope. This approach allows a thorough assessment of primary ash-fall preservation and secondary depositional features and demonstrates its value for assessing depositional integrity in the marine environment. Results indicate that the FMAZ II and IV are well-resolved primary deposits that can be used as isochrons for high-precision correlation studies. We outline key recommendations for future marine tephra studies and provide a protocol for optimising the application of tephrochronology to meet the INTIMATE synchronisation goals.

Influence of the number of elongated fiducial markers on the localization accuracy of the prostate

International Nuclear Information System (INIS)

De Boer, Johan; De Bois, Josien; Van Herk, Marcel; Sonke, Jan-Jakob

2012-01-01

Implanting fiducial markers for localization purposes has become an accepted practice in radiotherapy for prostate cancer. While many correction strategies correct for translations only, advanced correction protocols also require knowledge of the rotation of the prostate. For this purpose, typically, three or more markers are implanted. Elongated fiducial markers provide more information about their orientation than traditional round or cylindrical markers. Potentially, fewer markers are required. In this study, we evaluate the effect of the number of elongated markers on the localization accuracy of the prostate. To quantify the localization error, we developed a model that estimates, at arbitrary locations in the prostate, the registration error caused by translational and rotational uncertainties of the marker registration. Every combination of one, two and three markers was analysed for a group of 24 patients. The average registration errors at the prostate surface were 0.3–0.8 mm and 0.4–1 mm for registrations on, respectively, three markers and two markers located on different sides of the prostate. Substantial registration errors (2.0–2.2 mm) occurred at the prostate surface contralateral to the markers when two markers were implanted on the same side of the prostate or only one marker was used. In conclusion, there is no benefit in using three elongated markers: two markers accurately localize the prostate if they are implanted at some distance from each other. (paper)

A method of surface marker location optimization for tumor motion estimation in lung stereotactic body radiation therapy

International Nuclear Information System (INIS)

Lu, Bo; Park, Justin C.; Fan, Qiyong; Kahler, Darren; Liu, Chihray; Chen, Yunmei

2015-01-01

Purpose: Accurately localizing lung tumor localization is essential for high-precision radiation therapy techniques such as stereotactic body radiation therapy (SBRT). Since direct monitoring of tumor motion is not always achievable due to the limitation of imaging modalities for treatment guidance, placement of fiducial markers on the patient’s body surface to act as a surrogate for tumor position prediction is a practical alternative for tracking lung tumor motion during SBRT treatments. In this work, the authors propose an innovative and robust model to solve the multimarker position optimization problem. The model is able to overcome the major drawbacks of the sparse optimization approach (SOA) model. Methods: The principle-component-analysis (PCA) method was employed as the framework to build the authors’ statistical prediction model. The method can be divided into two stages. The first stage is to build the surrogate tumor matrix and calculate its eigenvalues and associated eigenvectors. The second stage is to determine the “best represented” columns of the eigenvector matrix obtained from stage one and subsequently acquire the optimal marker positions as well as numbers. Using 4-dimensional CT (4DCT) and breath hold CT imaging data, the PCA method was compared to the SOA method with respect to calculation time, average prediction accuracy, prediction stability, noise resistance, marker position consistency, and marker distribution. Results: The PCA and SOA methods which were both tested were on all 11 patients for a total of 130 cases including 4DCT and breath-hold CT scenarios. The maximum calculation time for the PCA method was less than 1 s with 64 752 surface points, whereas the average calculation time for the SOA method was over 12 min with 400 surface points. Overall, the tumor center position prediction errors were comparable between the two methods, and all were less than 1.5 mm. However, for the extreme scenarios (breath hold), the

United States of America. Report 1 [Marine Radioecology. Current Research and Future Scope

International Nuclear Information System (INIS)

Nakatani, R.E.

1967-01-01

Biology Department's aquatic research activities are primarily in freshwater radioecology and not in marine radioecology. The major reason for this lack of marine work is geographical location of our laboratory on the banks of the Columbia River, roughly 300 miles from the ocean. Recently, however, we have completed some preliminary work with 65 Zn metabolism in Anonyx sp., a marine benthic amphipod. Lake some inland laboratories, we have found that limited marine work can be done by hauling in sea water. We have been able to maintain the amphipods in a reasonably healthy state in our laboratory for about four weeks

Validation of candidate gene markers for marker-assisted selection of potato cultivars with improved tuber quality.

Science.gov (United States)

Li, Li; Tacke, Eckhard; Hofferbert, Hans-Reinhardt; Lübeck, Jens; Strahwald, Josef; Draffehn, Astrid M; Walkemeier, Birgit; Gebhardt, Christiane

2013-04-01

Tuber yield, starch content, starch yield and chip color are complex traits that are important for industrial uses and food processing of potato. Chip color depends on the quantity of reducing sugars glucose and fructose in the tubers, which are generated by starch degradation. Reducing sugars accumulate when tubers are stored at low temperatures. Early and efficient selection of cultivars with superior yield, starch yield and chip color is hampered by the fact that reliable phenotypic selection requires multiple year and location trials. Application of DNA-based markers early in the breeding cycle, which are diagnostic for superior alleles of genes that control natural variation of tuber quality, will reduce the number of clones to be evaluated in field trials. Association mapping using genes functional in carbohydrate metabolism as markers has discovered alleles of invertases and starch phosphorylases that are associated with tuber quality traits. Here, we report on new DNA variants at loci encoding ADP-glucose pyrophosphorylase and the invertase Pain-1, which are associated with positive or negative effect with chip color, tuber starch content and starch yield. Marker-assisted selection (MAS) and marker validation were performed in tetraploid breeding populations, using various combinations of 11 allele-specific markers associated with tuber quality traits. To facilitate MAS, user-friendly PCR assays were developed for specific candidate gene alleles. In a multi-parental population of advanced breeding clones, genotypes were selected for having different combinations of five positive and the corresponding negative marker alleles. Genotypes combining five positive marker alleles performed on average better than genotypes with four negative alleles and one positive allele. When tested individually, seven of eight markers showed an effect on at least one quality trait. The direction of effect was as expected. Combinations of two to three marker alleles were

Mapping coastal marine debris using aerial imagery and spatial analysis.

Science.gov (United States)

Moy, Kirsten; Neilson, Brian; Chung, Anne; Meadows, Amber; Castrence, Miguel; Ambagis, Stephen; Davidson, Kristine

2017-12-19

This study is the first to systematically quantify, categorize, and map marine macro-debris across the main Hawaiian Islands (MHI), including remote areas (e.g., Niihau, Kahoolawe, and northern Molokai). Aerial surveys were conducted over each island to collect high resolution photos, which were processed into orthorectified imagery and visually analyzed in GIS. The technique provided precise measurements of the quantity, location, type, and size of macro-debris (>0.05m 2 ), identifying 20,658 total debris items. Northeastern (windward) shorelines had the highest density of debris. Plastics, including nets, lines, buoys, floats, and foam, comprised 83% of the total count. In addition, the study located six vessels from the 2011 Tōhoku tsunami. These results created a baseline of the location, distribution, and composition of marine macro-debris across the MHI. Resource managers and communities may target high priority areas, particularly along remote coastlines where macro-debris counts were largely undocumented. Copyright © 2017 Elsevier Ltd. All rights reserved.

Matrix effects on organic pollutants analysis in marine sediment

Science.gov (United States)

Azis, M. Y.; Asia, L.; Piram, A.; Buchari, B.; Doumenq, P.; Setiyanto, H.

2018-05-01

Interference from the matrix sample can influence of the accurate analytical method. Accelerated Solvent Extraction and their purification methods were tried to separate the organic micropollutants respectively in marine sediment. Those matrix were as organic pollutants evaluation in marine environment. Polychlorinated Biphenyls (PCBs) and Organochlorine pesticides (OCPs) are two examples organic pollutant in environment which are carcinogenic and mutagenic. Marine sediments are important matrices of information regarding the human activities in coastal areas as well as the fate and behavior of organic pollutants, which are persistent in long-term. This research purpose to evaluate the matrice effect and the recovery from marine sediment spiking with several standar solution and deuterium of molecular target from organic pollutants in not polluted sample of sediment. Matrice samples was tested from indicate in unpolluted location. The methods were evaluated with standard calibration curve (linearity LOQ). Recovery (YE) relative, Matrice Effect (ME) relative correction with deuteriated standar were evaluated the interference the matrix. Interference effect for OCPs compounds were higher than PCBs in marine sediment.

Status of marine protected areas in Egypt

Directory of Open Access Journals (Sweden)

Samy, M.

2011-06-01

Full Text Available Egypt has sought to protect its natural resources and marine biodiversity by establishing a network of six MPAs that are generally located in the Gulf of Aqaba and the Red Sea; most of them include interconnected marine and terrestrial sectors based on conserving coral reefs and accompanying systems. We assessed the present status of MPA networks that showed a set of important results manifested in some strengths (i.e. proper selection according to specific criteria, management plans, etc., and also some weaknesses (i.e. a relatively small protected proportion of the Egyptian marine territorial waters, significant pressures mainly by tourism activities, etc.. Finally, some recommendations are proposed from this work (i.e. incorporate more habitats that are not well represented in the network, especially on the Mediterranean Sea; establishing a touristic carrying capacity of each area; etc. to improve the current situation.

Accuracy of ARGOS locations of Pinnipeds at-sea estimated using Fastloc GPS.

Directory of Open Access Journals (Sweden)

Daniel P Costa

Full Text Available BACKGROUND: ARGOS satellite telemetry is one of the most widely used methods to track the movements of free-ranging marine and terrestrial animals and is fundamental to studies of foraging ecology, migratory behavior and habitat-use. ARGOS location estimates do not include complete error estimations, and for many marine organisms, the most commonly acquired locations (Location Class 0, A, B, or Z are provided with no declared error estimate. METHODOLOGY/PRINCIPAL FINDINGS: We compared the accuracy of ARGOS Locations to those obtained using Fastloc GPS from the same electronic tags on five species of pinnipeds: 9 California sea lions (Zalophus californianus, 4 Galapagos sea lions (Zalophus wollebaeki, 6 Cape fur seals (Arctocephalus pusillus pusillus, 3 Australian fur seals (A. p. doriferus and 5 northern elephant seals (Mirounga angustirostris. These species encompass a range of marine habitats (highly pelagic vs coastal, diving behaviors (mean dive durations 2-21 min and range of latitudes (equator to temperate. A total of 7,318 ARGOS positions and 27,046 GPS positions were collected. Of these, 1,105 ARGOS positions were obtained within five minutes of a GPS position and were used for comparison. The 68(th percentile ARGOS location errors as measured in this study were LC-3 0.49 km, LC-2 1.01 km, LC-1 1.20 km, LC-0 4.18 km, LC-A 6.19 km, LC-B 10.28 km. CONCLUSIONS/SIGNIFICANCE: The ARGOS errors measured here are greater than those provided by ARGOS, but within the range of other studies. The error was non-normally distributed with each LC highly right-skewed. Locations of species that make short duration dives and spend extended periods on the surface (sea lions and fur seals had less error than species like elephant seals that spend more time underwater and have shorter surface intervals. Supplemental data (S1 are provided allowing the creation of density distributions that can be used in a variety of filtering algorithms to improve the

77 FR 6708 - Special Local Regulations for Marine Events; Potomac River, Charles County, MD

Science.gov (United States)

2012-02-09

...-AA08 Special Local Regulations for Marine Events; Potomac River, Charles County, MD AGENCY: Coast Guard... River, Charles County, MD. (a) Regulated area. The following location is a regulated area: All waters of... local regulations during the ``Potomac River Sharkfest Swim'' amateur swim, a marine event to be held on...

78 FR 2371 - Taking of Marine Mammals Incidental to Specified Activities; Construction of the East Span of the...

Science.gov (United States)

2013-01-11

... which case the animal's hearing threshold will recover over time (Southall et al. 2007). Since marine... re 1 [mu]Pa (RMS) at 1 m. However, in order for marine mammals to experience TTS or PTS, the animals... numbers of marine mammals observed, time and location of observation and behavior of the animal. In...

Need for organic reference materials in marine science

Energy Technology Data Exchange (ETDEWEB)

Wells, D.E.

1988-12-01

The reference materials (RMs) available for organic trace analysis (OTA) and the development programmes of the RM producers are reviewed. The need for a wider range of determinants, matrices and classes of RMs, particularly the more widespread use of laboratory RMs (LRMs) is discussed. Additional certified RMs should include phenolic surfactant degradation products, chlorophenolics from the wood and paper industries, and organobromines from fire retardants. RMs as molecular markers of geogenic, pyrogenic and biogenic sources; chlorophylls and xanthophylls as a measure of marine productivity and natural shellfish toxins are proposed.

Ocean currents generate large footprints in marine palaeoclimate proxies

NARCIS (Netherlands)

van Sebille, E.; Scussolini, P.; Durgadoo, J.V.; Peeters, F.J.C.; Biastoch, A.; Weijer, W.; Turney, C.; Paris, C.B.; Zahn, R.

2015-01-01

Fossils of marine microorganisms such as planktic foraminifera are among the cornerstones of palaeoclimatological studies. It is often assumed that the proxies derived from their shells represent ocean conditions above the location where they were deposited. Planktic foraminifera, however, are

Tagging of blast resistance gene(s) to DNA markers and marker-assisted selection (MAS) in rice improvement

International Nuclear Information System (INIS)

Zhuang, J.Y.; Lu, J.; Qian, H.R.; Lin, H.X.; Zheng, K.L.

1998-01-01

This paper reports progress made on the tagging of blast resistance gene(s) to DNA markers and on the initiation of marker-assisted selection (MAS) for blast resistance in rice improvement. A pair of near isogenic lines, K8OR and K79S, were developed using a Chinese landrace Hong-jiao-zhan as the resistance donor. Ten putatively positive markers were identified by screening 177 mapped DNA markers. Using the F 2 population of 143 plants and the derived F 3 lines, three Restriction Fragment Length Polymorphism (RFLP) markers (RG81, RG869 and RZ397) on chromosome 12 of rice were identified to be closely linked to the blast resistance gene Pi-12(t). The genetic distance between Pi-12(t) and the closest marker RG869 was 5.1 cM. By employing the bulk segregant analysis (BSA) procedure, six of 199 arbitrary primers were found to produce positive Randomly Amplified Polymorphic DNA (RAPD) bands. Tight linkage between Pi-12(t) and three RAPD bands, each from a different primer, was confirmed after amplification of DNA of all F 2 individuals. Two fragments were cloned and sequenced, and two sequence characterised amplified re-ion (SCAR) markers were established. In two other F 3 populations, Xian-feng I/Tetep and Xian-feng, 1/Hong-jiao-zhan, the blast resistance was found to be controlled by interactions of two or more genes. One resistance gene was located in the vicinity of RG81 in both populations. Work to identify other gene(s) is currently under way. Marker assisted selection for blast resistance was initiated. Crosses were made between elite varieties and blast resistance donors to develop populations for DNA marker-assisted selection of blast resistance. In addition, 48 varieties widely used in current rice breeding programs were provided by rice breeders. DNA marker-based polymorphism among, these varieties and resistance donors were analysed to produce a database for future MAS program. (author)

Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters.

Science.gov (United States)

Oberbeckmann, Sonja; Loeder, Martin G J; Gerdts, Gunnar; Osborn, A Mark

2014-11-01

Plastic pollution is now recognised as a major threat to marine environments and marine biota. Recent research highlights that diverse microbial species are found to colonise plastic surfaces (the plastisphere) within marine waters. Here, we investigate how the structure and diversity of marine plastisphere microbial community vary with respect to season, location and plastic substrate type. We performed a 6-week exposure experiment with polyethylene terephthalate (PET) bottles in the North Sea (UK) as well as sea surface sampling of plastic polymers in Northern European waters. Scanning electron microscopy revealed diverse plastisphere communities comprising prokaryotic and eukaryotic microorganisms. Denaturing gradient gel electrophoresis (DGGE) and sequencing analysis revealed that plastisphere microbial communities on PET fragments varied both with season and location and comprised of bacteria belonging to Bacteroidetes, Proteobacteria, Cyanobacteria and members of the eukaryotes Bacillariophyceae and Phaeophyceae. Polymers sampled from the sea surface mainly comprised polyethylene, polystyrene and polypropylene particles. Variation within plastisphere communities on different polymer types was observed, but communities were primarily dominated by Cyanobacteria. This research reveals that the composition of plastisphere microbial communities in marine waters varies with season, geographical location and plastic substrate type. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Safety performance monitoring of autonomous marine systems

International Nuclear Information System (INIS)

Thieme, Christoph A.; Utne, Ingrid B.

2017-01-01

The marine environment is vast, harsh, and challenging. Unanticipated faults and events might lead to loss of vessels, transported goods, collected scientific data, and business reputation. Hence, systems have to be in place that monitor the safety performance of operation and indicate if it drifts into an intolerable safety level. This article proposes a process for developing safety indicators for the operation of autonomous marine systems (AMS). The condition of safety barriers and resilience engineering form the basis for the development of safety indicators, synthesizing and further adjusting the dual assurance and the resilience based early warning indicator (REWI) approaches. The article locates the process for developing safety indicators in the system life cycle emphasizing a timely implementation of the safety indicators. The resulting safety indicators reflect safety in AMS operation and can assist in planning of operations, in daily operational decision-making, and identification of improvements. Operation of an autonomous underwater vehicle (AUV) exemplifies the process for developing safety indicators and their implementation. The case study shows that the proposed process leads to a comprehensive set of safety indicators. It is expected that application of the resulting safety indicators consequently will contribute to safer operation of current and future AMS. - Highlights: • Process for developing safety indicators for autonomous marine systems. • Safety indicators based on safety barriers and resilience thinking. • Location of the development process in the system lifecycle. • Case study on AUV demonstrating applicability of the process.

R2 & NE: NAVTEQ 2011 Q3 Distance Marker Points for the United States in SDC Format

Data.gov (United States)

U.S. Environmental Protection Agency — The DISTMARKER layer contains sequentially numbered markers placed along roads at regular intervals that serve as reference location signs. Distance Markers includes...

Effect of Tumbling Marination on Marinade Uptake of Chicken Carcass and Parts Quality

Directory of Open Access Journals (Sweden)

J U-chupaj

Full Text Available ABSTRACT The objectives of this study were to evaluate the effect of marination on marinade uptake of chicken carcasses and to determine the meat quality of carcass parts. In total, 45 eviscerated chicken carcasses were divided into three marinating treatments: no marination, marination in water, marination in non-phosphate and low-salt solution (NPLS. The study showed that the marinade uptake of chicken carcasses was higher than 4.0% for NPLS marination and than 3.5% for water marination when compared with the non-marinated treatment. However, raw chicken meat yield after cut-up was not significantly different (p≥0.05 among treatments. Carcasses marinated in NPLS solution presented higher water-holding capacity (WHC. The results showed that NPLS marination may reduce cooking loss and expressible water of chicken meat after cooking. Based on the Warner-Bratzler Shear (WBSF results, NPLS marination had a stronger effect on textural quality of cooked breast meat than thighs and drumsticks. However, no significant differences of texture profile analysis (TPA parameters were observed (p≥0.05. In the sensory evaluation, NPLS marination influenced the sensory quality of cooked meat, particularly texture and appearance attributes, but not the taste and aftertaste attributes of cooked meat. It is concluded that NPLS marination effectively increased carcass weight, despite its effects on meat quality varied according to the anatomical location of the parts.

Effects of Single Nucleotide Polymorphism Marker Density on Haplotype Block Partition

Directory of Open Access Journals (Sweden)

Sun Ah Kim

2016-12-01

Full Text Available Many researchers have found that one of the most important characteristics of the structure of linkage disequilibrium is that the human genome can be divided into non-overlapping block partitions in which only a small number of haplotypes are observed. The location and distribution of haplotype blocks can be seen as a population property influenced by population genetic events such as selection, mutation, recombination and population structure. In this study, we investigate the effects of the density of markers relative to the full set of all polymorphisms in the region on the results of haplotype partitioning for five popular haplotype block partition methods: three methods in Haploview (confidence interval, four gamete test, and solid spine, MIG++ implemented in PLINK 1.9 and S-MIG++. We used several experimental datasets obtained by sampling subsets of single nucleotide polymorphism (SNP markers of chromosome 22 region in the 1000 Genomes Project data and also the HapMap phase 3 data to compare the results of haplotype block partitions by five methods. With decreasing sampling ratio down to 20% of the original SNP markers, the total number of haplotype blocks decreases and the length of haplotype blocks increases for all algorithms. When we examined the marker-independence of the haplotype block locations constructed from the datasets of different density, the results using below 50% of the entire SNP markers were very different from the results using the entire SNP markers. We conclude that the haplotype block construction results should be used and interpreted carefully depending on the selection of markers and the purpose of the study.

Linking terrestrial and marine conservation planning and threats analysis.

Science.gov (United States)

Tallis, Heather; Ferdaña, Zach; Gray, Elizabeth

2008-02-01

The existence of the Gulf of Mexico dead zone makes it clear that marine ecosystems can be damaged by terrestrial inputs. Marine and terrestrial conservation planning need to be aligned in an explicit fashion to fully represent threats to marine systems. To integrate conservation planning for terrestrial and marine systems, we used a novel threats assessment that included 5 cross-system threats in a site-prioritization exercise for the Pacific Northwest coast ecoregion (U.S.A.). Cross-system threats are actions or features in one ecological realm that have effects on species in another realm. We considered bulkheads and other forms of shoreline hardening threats to terrestrial systems and roads, logging, agriculture, and urban areas threats to marine systems. We used 2 proxies of freshwater influence on marine environments, validated against a mechanistic model and field observations, to propagate land-based threats into marine sites. We evaluated the influence of cross-system threats on conservation priorities by comparing MARXAN outputs for 3 scenarios that identified terrestrial and marine priorities simultaneously: (1) no threats, (2) single-system threats, and (3) single- and cross-system threats. Including cross-system threats changed the threat landscape dramatically. As a result the best plan that included only single-system threats identified 323 sites (161,500 ha) at risk from cross-system threats. Including these threats changed the location of best sites. By comparing the best and sum solutions of the single- and cross-system scenarios, we identified areas ideal for preservation or restoration through integrated management. Our findings lend quantitative support to the call for explicitly integrated decision making and management action in terrestrial and marine ecosystems.

Otolith shape analysis and mitochondrial DNA markers distinguish three sand smelt species in the Atherina boyeri species complex in western Mediterranean

Science.gov (United States)

Boudinar, A. S.; Chaoui, L.; Quignard, J. P.; Aurelle, D.; Kara, M. H.

2016-12-01

Atherina boyeri is a common euryhaline teleost fish in the Mediterranean and adjacent areas, which inhabits coastal and estuarine waters, including coastal lagoons and more rarely inland waters. Several recent studies have pointed the possible existence of three distinct groups or species, one lagoon/freshwater group and two 'punctuated and unpunctuated on the flanks' marine groups, within an A. boyeri species complex. This study is a combined approach using otolith shape and molecular markers to better define the structure of the species in the western Mediterranean. Genetic differentiation and species delimitation among nine Atherina boyeri populations from several marine and lagoon/brakish habitat sites in Algeria, Tunisia and France were investigated using three mitochondrial (control region, Cyt b and 16S) and one nuclear markers (2nd intron of S7). For further phylogenetic and phylogeographic study, we added sequences from Genbank covering more areas (Ionian Sea, Adriatic Sea, Tyrrhenian Sea, Black Sea, Atlantic). Five groups were found. Two of them perfectly corresponded to two species already recognized Atherina presbyter and Atherina hepsetus, both living in marine waters; and three additional, including Atherina boyeri (brackish and freshwater environments) and two independent groups of marine punctated and unpunctated individuals. Those findings are corroborated by the study of the otolith contour shape of 362 individuals of seven populations from different habitats using Fourier analysis. Individuals could be discriminated into five groups based on the first two functions (Wilk's lambda = 0.07, p < 0.001). Samples from Ziama inlet, marine punctuated individuals and unpunctuated marine specimens from Annaba's Gulf formed three well separated groups. Specimens from Mellah and Mauguio lagoons formed another group. The last one includes individuals from Bizerte and Thau lagoons. The divergences between them strongly support the potential species within the

Spermatogonial stem cell markers and niche in equids.

Directory of Open Access Journals (Sweden)

Guilherme M J Costa

Full Text Available Spermatogonial stem cells (SSCs are the foundation of spermatogenesis and are located in a highly dynamic microenvironment called "niche" that influences all aspects of stem cell function, including homing, self-renewal and differentiation. Several studies have recently identified specific proteins that regulate the fate of SSCs. These studies also aimed at identifying surface markers that would facilitate the isolation of these cells in different vertebrate species. The present study is the first to investigate SSC physiology and niche in stallions and to offer a comparative evaluation of undifferentiated type A spermatogonia (Aund markers (GFRA1, PLZF and CSF1R in three different domestic equid species (stallions, donkeys, and mules. Aund were first characterized according to their morphology and expression of the GFRA1 receptor. Our findings strongly suggest that in stallions these cells were preferentially located in the areas facing the interstitium, particularly those nearby blood vessels. This distribution is similar to what has been observed in other vertebrate species. In addition, all three Aund markers were expressed in the equid species evaluated in this study. These markers have been well characterized in other mammalian species, which suggests that the molecular mechanisms that maintain the niche and Aund/SSCs physiology are conserved among mammals. We hope that our findings will help future studies needing isolation and cryopreservation of equids SSCs. In addition, our data will be very useful for studies that aim at preserving the germplasm of valuable animals, and involve germ cell transplantation or xenografts of equids testis fragments/germ cells suspensions.

Cross-species applicability of chicken microsatellite markers for ...

African Journals Online (AJOL)

We obtained blood samples of 57 Indian ducks (Anas platyrhynchos) belonging to three indigenous duck populations of geographically distinct locations of the country and genotyped them using chicken microsatellite markers. Twenty three of the 30 loci were amplified and 17 loci yielded high success rate (> 91%).

Using the marine unicellular algae in biological monitoring

Directory of Open Access Journals (Sweden)

Kapkov V. I.

2017-06-01

Full Text Available The possibility of using marine unicellular algae from natural plankton community in biomonitoring of pollution by heavy metals has been investigated. Algae of different taxa from the Mediterranean Sea have been allocated to culture. In the laboratory the culture conditions – i. e. growth medium, temperature, photoperiod, level of artificial light and initial density – have been selected for every species. The impact of heavy metals (Hg, Cd, Cu, Pb in the form of chloride salts on the growth of axenic algae culture has been studied in the modelling experiments. The unicellular marine algae have a very short life cycle, therefore it is possible to use them in the experiments of studying the effect of anthropogenic factors at cellular and population levels on the test-object. With biomonitoring pollution of marine environment by heavy metals and others dangerous toxicants, the major indicators of algae community condition are the cellular cycle and the condition of the photosynthetic apparatus of the cell. The subsequent lysis of cells under the influence of heavy metals leads to the excretion of secondary metabolites which can essentially affect the metal toxicity. The established scales of threshold and lethal concentration of heavy metals for algae of different taxon make it possible to use the ratio of sensitive and resistant species to heavy metals as biological markers when forecasting ecological consequences of pollution of the marine environment by heavy metals. Distinctions in the resistance of different taxon to heavy metals can result in implementing the strategy of selection of test-objects depending on the purposes of the research.

Indicators of Marine Pollution in the North Pacific Ocean.

Science.gov (United States)

Brown, Tanya M; Takada, Hideshige

2017-08-01

The complex nature of ocean pollution underscores the utility in identifying and characterizing a limited number of "indicators" that enables scientists and managers to track trends over space and time. This paper introduces a special issue on indicators of marine pollution in the North Pacific Ocean and builds on a scientific session that was held at the North Pacific Marine Science Organization. The special issue highlights studies using a variety of indicators to provide insight into the identification of legacy and emerging contaminants, the ranking of priority pollutants from various sources, and the effects of contaminants on ecosystem health in the North Pacific Ocean. Examples include the use of mussels to illustrate spatial and temporal trends of a number of contaminants following the 2011 tsunami in Japan, the use of molecular marker (linear alkylbenzenes, hopanes, and polycyclic aromatic hydrocarbons) profiles to identify pollution sources, and the use of plastic resin pellets to illustrate spatial trends of petroleum pollution around the world. Stable isotopes were used to strengthen the utility of the Glaucous-winged gull (Larus glaucescens) as an indicator of marine pollution. Examples also demonstrate the development and application of biomarker approaches, including gene transcripts, oxidative stress, estradiol, hatchability, and respiration and swimming behavior abnormalities, as a function of exposure to polychlorinated biphenyls, sulfur-diesel, Pinghu crude oil, galaxolide and antifouling biocides. We provide a brief review of indicators of marine pollution, identify research gaps, and summarize key findings from the articles published within the issue. This special issue represents the first compilation of research pertaining to marine pollution indicators in the North Pacific Ocean and provides guidance to inform mitigation and monitoring efforts of contaminants in the region.

Leaf margin phenotype-specific restriction-site-associated DNA-derived markers for pineapple (Ananas comosus L.).

Science.gov (United States)

Urasaki, Naoya; Goeku, Satoko; Kaneshima, Risa; Takamine, Tomonori; Tarora, Kazuhiko; Takeuchi, Makoto; Moromizato, Chie; Yonamine, Kaname; Hosaka, Fumiko; Terakami, Shingo; Matsumura, Hideo; Yamamoto, Toshiya; Shoda, Moriyuki

2015-06-01

To explore genome-wide DNA polymorphisms and identify DNA markers for leaf margin phenotypes, a restriction-site-associated DNA sequencing analysis was employed to analyze three bulked DNAs of F1 progeny from a cross between a 'piping-leaf-type' cultivar, 'Yugafu', and a 'spiny-tip-leaf-type' variety, 'Yonekura'. The parents were both Ananas comosus var. comosus. From the analysis, piping-leaf and spiny-tip-leaf gene-specific restriction-site-associated DNA sequencing tags were obtained and designated as PLSTs and STLSTs, respectively. The five PLSTs and two STSLTs were successfully converted to cleaved amplified polymorphic sequence (CAPS) or simple sequence repeat (SSR) markers using the sequence differences between alleles. Based on the genotyping of the F1 with two SSR and three CAPS markers, the five PLST markers were mapped in the vicinity of the P locus, with the closest marker, PLST1_SSR, being located 1.5 cM from the P locus. The two CAPS markers from STLST1 and STLST3 perfectly assessed the 'spiny-leaf type' as homozygotes of the recessive s allele of the S gene. The recombination value between the S locus and STLST loci was 2.4, and STLSTs were located 2.2 cM from the S locus. SSR and CAPS markers are applicable to marker-assisted selection of leaf margin phenotypes in pineapple breeding.

Global imprint of climate change on marine life

DEFF Research Database (Denmark)

Poloczanska, Elvira S.; Brown, Christopher J.; Sydeman, William J.

2013-01-01

Past meta-analyses of the response of marine organisms to climate change have examined a limited range of locations1,2, taxonomic groups2–4 and/or biological responses5,6. This has precluded a robust overview of the effect of climate change in the global ocean. Here, we synthesized all available ...

Identification of molecular markers associated with Verticillium wilt resistance in alfalfa (Medicago sativa L.) using high-resolution melting.

Science.gov (United States)

Zhang, Tiejun; Yu, Long-Xi; McCord, Per; Miller, David; Bhamidimarri, Suresh; Johnson, David; Monteros, Maria J; Ho, Julie; Reisen, Peter; Samac, Deborah A

2014-01-01

Verticillium wilt, caused by the soilborne fungus, Verticillium alfalfae, is one of the most serious diseases of alfalfa (Medicago sativa L.) worldwide. To identify loci associated with resistance to Verticillium wilt, a bulk segregant analysis was conducted in susceptible or resistant pools constructed from 13 synthetic alfalfa populations, followed by association mapping in two F1 populations consisted of 352 individuals. Simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers were used for genotyping. Phenotyping was done by manual inoculation of the pathogen to replicated cloned plants of each individual and disease severity was scored using a standard scale. Marker-trait association was analyzed by TASSEL. Seventeen SNP markers significantly associated with Verticillium wilt resistance were identified and they were located on chromosomes 1, 2, 4, 7 and 8. SNP markers identified on chromosomes 2, 4 and 7 co-locate with regions of Verticillium wilt resistance loci reported in M. truncatula. Additional markers identified on chromosomes 1 and 8 located the regions where no Verticillium resistance locus has been reported. This study highlights the value of SNP genotyping by high resolution melting to identify the disease resistance loci in tetraploid alfalfa. With further validation, the markers identified in this study could be used for improving resistance to Verticillium wilt in alfalfa breeding programs.

Potential Demand of Relatively New and Emerging Marine Ecotourism in Kei Islands

Science.gov (United States)

Dewa Ayu Raka Susanti, Ida I.; Teniwut, Wellem A.; Kahfi, Syahibul; M. K Teniwut, Roberto; Picaulima, Simon; Hungan, Marselus; Rahantoknam, Meyske; Hasyim, Cawalinya; Rahakbauw, Siska D.; Renjaan, M. R.; Ngabalin, Anna M.; Ngangun, Tati A.; Pentury, Frischila; Betaubun, Kamilius D.; Ngamel, A. K.; Ohoiwutun, Elisabeth C.

2017-10-01

One of the main resources for the economic development of coastal are marine ecotourism. Although for developing country such as Indonesia and especially for an area that located far from a big city like Kei Islands in Maluku, development of marine ecotourism might face a greater challenge than any other places. Considering the potential for multiplier effect on economic of a coastal community, the purpose of this research was to analyze and measure the economic value of new, raw and emerging marine ecotourism spot and determine the demand based on domestic tourist perspective. We pick five new and emerging marine ecotourism spots in this area as case study and used purposive sampling technique to target potential domestic tourist who have visited those five marine ecotourism spots and measure their preference and measure their demand potential by used willingness to revisit (WTR) and logistic regression for analyze the data, this research conducted in Kei Islands, Indonesia. This result can provide broad and comprehensive perspective on developing marine ecotourism in a mildly isolated coastal area like Kei Islands and place similar.

Identification, definition and quantification of goods and services provided by marine biodiversity: Implications for the ecosystem approach

NARCIS (Netherlands)

Beaumont, N.J.; Austen, M.C.; Atkins, J.P.; Burdon, D.; Degraer, S.; Dentinho, T.P.; Serous, S.; Holm, P.; Horton, T.; Ierland, van E.C.; Marboe, A.H.; Starkey, D.J.; Townsend, M.; Zarzycki, T.

2007-01-01

This paper identifies and defines ecosystem goods and services provided by marine biodiversity. Case studies have been used to provide an insight into the practical issues associated with the assessment of marine ecosystem goods and services at specific locations. The aim of this research was to

A and MdMYB1 allele-specific markers controlling apple (Malus x domestica Borkh.) skin color and suitability for marker-assisted selection.

Science.gov (United States)

Zhang, X J; Wang, L X; Chen, X X; Liu, Y L; Meng, R; Wang, Y J; Zhao, Z Y

2014-10-31

Pre-selection for fruit skin color at the seedling stage would be highly advantageous, with marker-assisted selection offering a potential method for apple pre-selection. A and MdMYB1 alleles are allele-specific DNA markers that are potentially associated with apple skin color, and co-segregate with the Rf and Rni loci, respectively. Here, we assessed the potential application of these 2 alleles for marker-assisted breeding across 30 diverse cultivars and 2 apple seedling progenies. The red skin color phenotype was usually associated with the MdMYB1-1 allele and A(1) allele, respectively, while the 2 molecular markers provided approximately 91% predictability in the 'Fuji' x 'Cripps Pink' and 'Fuji' x 'Gala' progenies. The results obtained from the 30 cultivars and 2 progenies were consistent for the 2 molecular markers. Hence, the results supported that Rf and Rni could be located in a gene cluster, or even correspond to alleles of the same gene. Our results are consistent with the hypothesis that red/yellow dimorphism is controlled by a monogenic system, with the presence of the red anthocyanin pigmentation being dominant. In addition, our results supported that the practical utilization of the 2 function markers to efficiently and accurately select red-skinned apple cultivars in apple scion breeding programs.

Island biogeography of marine organisms

Science.gov (United States)

Pinheiro, Hudson T.; Bernardi, Giacomo; Simon, Thiony; Joyeux, Jean-Christophe; Macieira, Raphael M.; Gasparini, João Luiz; Rocha, Claudia; Rocha, Luiz A.

2017-09-01

Studies on the distribution and evolution of organisms on oceanic islands have advanced towards a dynamic perspective, where terrestrial endemicity results from island geographical aspects and geological history intertwined with sea-level fluctuations. Diversification on these islands may follow neutral models, decreasing over time as niches are filled, or disequilibrium states and progression rules, where richness and endemism rise with the age of the archipelago owing to the splitting of ancestral lineages (cladogenesis). However, marine organisms have received comparatively little scientific attention. Therefore, island and seamount evolutionary processes in the aquatic environment remain unclear. Here we analyse the evolutionary history of reef fishes that are endemic to a volcanic ridge of seamounts and islands to understand their relations to island evolution and sea-level fluctuations. We also test how this evolutionary history fits island biogeography theory. We found that most endemic species have evolved recently (Pleistocene epoch), during a period of recurrent sea-level changes and intermittent connectivity caused by repeated aerial exposure of seamounts, a finding that is consistent with an ephemeral ecological speciation process. Similar to findings for terrestrial biodiversity, our data suggest that the marine speciation rate on islands is negatively correlated with immigration rate. However, because marine species disperse better than terrestrial species, most niches are filled by immigration: speciation increases with the random accumulation of species with low dispersal ability, with few opportunities for in situ cladogenesis and adaptive radiation. Moreover, we confirm that sea-level fluctuations and seamount location play a critical role in marine evolution, mainly by intermittently providing stepping stones for island colonization.

Advanced Geophysical Classification with the Marine Towed Array

Science.gov (United States)

Steinhurst, D.; Harbaugh, G.; Keiswetter, D.; Bell, T. W.; Massey, G.; Wright, D.

2017-12-01

The Marine Towed Array, or MTA, is an underwater dual-mode sensor array that has been successfully deployed at multiple marine venues in support of Strategic Environmental Research and Development Program (SERDP) and Environmental Security Technology Certification Program (ESTCP) demonstrations beginning in 2004. It provided both marine electromagnetic and marine magnetic sensors for detection and mapping of underwater UXO. The EMI sensor array was based on older technology, which in several ESTCP demonstrations has not been able to support advanced geophysical classification (AGC). Under ESTCP funding, the U.S. Naval Research Laboratory is in the process of upgrading the MTA with modern, advanced electromagnetic (EMI) electronics and replacing the sensor array with a modern, multistatic array design. A half-scale version of the proposed array has been built and tested on land. Six tri-axial receiver cubes were placed inside two- and three- transmit coil configurations in equivalent positions to design locations for the MTA wing. The responses of a variety of munitions items and test spheres were measured over a range of target-to-array geometries and in both static and simulated dynamic data collection modes. The multi-transmit coil configuration was shown to provide enhanced single-pass classification performance over the original single coil design, particularly as a function of target location relative to the centerline. The ability to go beyond anomaly detection and additionally classify detected anomalies from survey data would dramatically improve the state of the art for underwater UXO remediation by reducing costs and improving the efficiency of these efforts. The results of our efforts to return the MTA to service and validating the new EMI array's design for UXO detection and classification in the underwater environment will be the focus of this presentation.

Statistical properties of interval mapping methods on quantitative trait loci location: impact on QTL/eQTL analyses

Directory of Open Access Journals (Sweden)

Wang Xiaoqiang

2012-04-01

Full Text Available Abstract Background Quantitative trait loci (QTL detection on a huge amount of phenotypes, like eQTL detection on transcriptomic data, can be dramatically impaired by the statistical properties of interval mapping methods. One of these major outcomes is the high number of QTL detected at marker locations. The present study aims at identifying and specifying the sources of this bias, in particular in the case of analysis of data issued from outbred populations. Analytical developments were carried out in a backcross situation in order to specify the bias and to propose an algorithm to control it. The outbred population context was studied through simulated data sets in a wide range of situations. The likelihood ratio test was firstly analyzed under the "one QTL" hypothesis in a backcross population. Designs of sib families were then simulated and analyzed using the QTL Map software. On the basis of the theoretical results in backcross, parameters such as the population size, the density of the genetic map, the QTL effect and the true location of the QTL, were taken into account under the "no QTL" and the "one QTL" hypotheses. A combination of two non parametric tests - the Kolmogorov-Smirnov test and the Mann-Whitney-Wilcoxon test - was used in order to identify the parameters that affected the bias and to specify how much they influenced the estimation of QTL location. Results A theoretical expression of the bias of the estimated QTL location was obtained for a backcross type population. We demonstrated a common source of bias under the "no QTL" and the "one QTL" hypotheses and qualified the possible influence of several parameters. Simulation studies confirmed that the bias exists in outbred populations under both the hypotheses of "no QTL" and "one QTL" on a linkage group. The QTL location was systematically closer to marker locations than expected, particularly in the case of low QTL effect, small population size or low density of markers, i

Pu Radioisotopes and 241Am as Alternative Chronostratigraphic Markers in Tropical Regions: An Application in Havana Bay (Cuba)

International Nuclear Information System (INIS)

Alvarado, J.A. Corcho; Froidevaux, P.; Bochud, F.; Diaz-Asencio, M.; Hernandez, C.M. Alonso; Sanchez-Cabeza, J.A.

2011-01-01

The low 137 Cs activity observed in marine sediments of tropical regions often precludes its use as chronostratigraphic marker. Here we present a study on the use of Pu and Am radioisotopes as alternative markers to constrain the 210 Pb ages in a sediment core of the Havana Bay (Cuba). Mean activity ratios of 238 Pu/ 239,240 Pu, 241 Am/ 239,240 Pu and 241 Pu/ 239 , 240 Pu indicated that the nuclear weapon tests (NWT) fallout is the main source of the anthropogenic radionuclides. While the inventory of 137 Cs in the sediments is lower than the expected fallout inventory, 239,240 Pu accumulates in the sediments with inventories higher than the expected fallout inventory. The high fluxes of 239,240 Pu are nevertheless corroborated here through use of 210 Pb, and confirm that focusing of solid particles is of great importance in the investigated site. 239,240 Pu showed to be a useful time tracer in marine sites where the 137 Cs signal is very low. (author)

Aberrant location of inhibitory synaptic marker proteins in the hippocampus of dystrophin-deficient mice: implications for cognitive impairment in duchenne muscular dystrophy.

Directory of Open Access Journals (Sweden)

Elżbieta Krasowska

Full Text Available Duchenne muscular dystrophy (DMD is a neuromuscular disease that arises from mutations in the dystrophin-encoding gene. Apart from muscle pathology, cognitive impairment, primarily of developmental origin, is also a significant component of the disorder. Convergent lines of evidence point to an important role for dystrophin in regulating the molecular machinery of central synapses. The clustering of neurotransmitter receptors at inhibitory synapses, thus impacting on synaptic transmission, is of particular significance. However, less is known about the role of dystrophin in influencing the precise expression patterns of proteins located within the pre- and postsynaptic elements of inhibitory synapses. To this end, we exploited molecular markers of inhibitory synapses, interneurons and dystrophin-deficient mouse models to explore the role of dystrophin in determining the stereotypical patterning of inhibitory connectivity within the cellular networks of the hippocampus CA1 region. In tissue from wild-type (WT mice, immunoreactivity of neuroligin2 (NL2, an adhesion molecule expressed exclusively in postsynaptic elements of inhibitory synapses, and the vesicular GABA transporter (VGAT, a marker of GABAergic presynaptic elements, were predictably enriched in strata pyramidale and lacunosum moleculare. In acute contrast, NL2 and VGAT immunoreactivity was relatively evenly distributed across all CA1 layers in dystrophin-deficient mice. Similar changes were evident with the cannabinoid receptor 1, vesicular glutamate transporter 3, parvalbumin, somatostatin and the GABAA receptor alpha1 subunit. The data show that in the absence of dystrophin, there is a rearrangement of the molecular machinery, which underlies the precise spatio-temporal pattern of GABAergic synaptic transmission within the CA1 sub-field of the hippocampus.

75 FR 54026 - Salvage and Marine Firefighting Requirements; Vessel Response Plans for Oil

Science.gov (United States)

2010-09-03

... information for resource providers for each vessel with appropriate equipment and resources located in each... appropriate salvage and marine firefighting resources were identified and available for responding to...

Field-Based Radiographic Imaging of Marine Megafauna: Marine Iguanas (Amblyrhynchus cristatus as a Case Study

Directory of Open Access Journals (Sweden)

Gregory A. Lewbart

2018-02-01

Full Text Available Effective conservation of marine megafauna requires a thorough understanding of the ecology, physiology, population dynamics, and health of vulnerable species. Assessing the health of large, mobile marine animals poses particular challenges, in part because the subjects are difficult to capture and restrain, and in part because standard laboratory and diagnostic tools are difficult to apply in a field setting. Radiography is a critically important diagnostic tool used routinely by veterinarians, but it has seldom been possible to image live marine vertebrates in the field. As a first step toward assessing the feasibility of incorporating radiography into studies of vulnerable species in remote locations, we used portable radiographic equipment to acquire the first digital internal images of living marine iguanas, Amblyrhynchus cristatus, an iconic lizard endemic only to the Galápagos Islands of Ecuador. The radiographic machinery was powered by batteries and performed well on a rocky beach environment of an uninhabited island, despite high heat and humidity. The accuracy of radiographic measurements was validated by computing a snout-vent length (SVL using bone dimensions and comparing this to standard measurements of SVL made externally with a tape measure. These results demonstrate the feasibility of using radiography to study animals in remote sites, a technique that may prove useful for a variety of physiological, ecological, and biomechanical studies in which reliable measurements of skeletal and soft-tissue dimensions must be acquired under challenging field conditions. Refinements are discussed that will help the technology reach its full potential in field studies.

Marine biodiversity of Aotearoa New Zealand.

Science.gov (United States)

Gordon, Dennis P; Beaumont, Jennifer; MacDiarmid, Alison; Robertson, Donald A; Ahyong, Shane T

2010-08-02

The marine-biodiversity assessment of New Zealand (Aotearoa as known to Māori) is confined to the 200 nautical-mile boundary of the Exclusive Economic Zone, which, at 4.2 million km(2), is one of the largest in the world. It spans 30 degrees of latitude and includes a high diversity of seafloor relief, including a trench 10 km deep. Much of this region remains unexplored biologically, especially the 50% of the EEZ deeper than 2,000 m. Knowledge of the marine biota is based on more than 200 years of marine exploration in the region. The major oceanographic data repository is the National Institute of Water and Atmospheric Research (NIWA), which is involved in several Census of Marine Life field projects and is the location of the Southwestern Pacific Regional OBIS Node; NIWA is also data manager and custodian for fisheries research data owned by the Ministry of Fisheries. Related data sources cover alien species, environmental measures, and historical information. Museum collections in New Zealand hold more than 800,000 registered lots representing several million specimens. During the past decade, 220 taxonomic specialists (85 marine) from 18 countries have been engaged in a project to review New Zealand's entire biodiversity. The above-mentioned marine information sources, published literature, and reports were scrutinized to give the results summarized here for the first time (current to 2010), including data on endemism and invasive species. There are 17,135 living species in the EEZ. This diversity includes 4,315 known undescribed species in collections. Species diversity for the most intensively studied phylum-level taxa (Porifera, Cnidaria, Mollusca, Brachiopoda, Bryozoa, Kinorhyncha, Echinodermata, Chordata) is more or less equivalent to that in the ERMS (European Register of Marine Species) region, which is 5.5 times larger in area than the New Zealand EEZ. The implication is that, when all other New Zealand phyla are equally well studied, total marine

Marine biology

International Nuclear Information System (INIS)

Thurman, H.V.; Webber, H.H.

1984-01-01

This book discusses both taxonomic and ecological topics on marine biology. Full coverage of marine organisms of all five kingdoms is provided, along with interesting and thorough discussion of all major marine habitats. Organization into six major parts allows flexibility. It also provides insight into important topics such as disposal of nuclear waste at sea, the idea that life began on the ocean floor, and how whales, krill, and people interact. A full-color photo chapter reviews questions, and exercises. The contents are: an overview marine biology: fundamental concepts/investigating life in the ocean; the physical ocean, the ocean floor, the nature of water, the nature and motion of ocean water; general ecology, conditions for life in the sea, biological productivity and energy transfer; marine organisms; monera, protista, mycota and metaphyta; the smaller marine animals, the large animals marine habitats, the intertidal zone/benthos of the continental shelf, the photic zone, the deep ocean, the ocean under stress, marine pollution, appendix a: the metric system and conversion factors/ appendix b: prefixes and suffixes/ appendix c: taxonomic classification of common marine organisms, and glossary, and index

Trophic Ecology of Benthic Marine Invertebrates with Bi-Phasic Life Cycles: What Are We Still Missing?

Science.gov (United States)

Calado, Ricardo; Leal, Miguel Costa

2015-01-01

The study of trophic ecology of benthic marine invertebrates with bi-phasic life cycles is critical to understand the mechanisms shaping population dynamics. Moreover, global climate change is impacting the marine environment at an unprecedented level, which promotes trophic mismatches that affect the phenology of these species and, ultimately, act as drivers of ecological and evolutionary change. Assessing the trophic ecology of marine invertebrates is critical to understanding maternal investment, larval survival to metamorphosis, post-metamorphic performance, resource partitioning and trophic cascades. Tools already available to assess the trophic ecology of marine invertebrates, including visual observation, gut content analysis, food concentration, trophic markers, stable isotopes and molecular genetics, are reviewed and their main advantages and disadvantages for qualitative and quantitative approaches are discussed. The challenges to perform the partitioning of ingestion, digestion and assimilation are discussed together with different approaches to address each of these processes for short- and long-term fingerprinting. Future directions for research on the trophic ecology of benthic marine invertebrates with bi-phasic life cycles are discussed with emphasis on five guidelines that will allow for systematic study and comparative meta-analysis to address important unresolved questions. © 2015 Elsevier Ltd. All rights reserved.

The effects PCSO-524?, a patented marine oil lipid and omega-3 PUFA blend derived from the New Zealand green lipped mussel (Perna canaliculus), on indirect markers of muscle damage and inflammation after muscle damaging exercise in untrained men: a randomized, placebo controlled trial

OpenAIRE

Mickleborough, Timothy D; Sinex, Jacob A; Platt, David; Chapman, Robert F; Hirt, Molly

2015-01-01

Background The purpose of the present study was to evaluate the effects of PCSO-524?, a marine oil lipid and n-3 LC PUFA blend, derived from New Zealand green- lipped mussel (Perna canaliculus), on markers of muscle damage and inflammation following muscle damaging exercise in untrained men. Methods Thirty two untrained male subjects were randomly assigned to consume 1200?mg/d of PCSO- 524? (a green-lipped mussel oil blend) or placebo for 26 d prior to muscle damaging exercise (downhill runni...

CoralWatch Data Analysis at Hoi Ha Wan Marine Park, Hong Kong

Science.gov (United States)

Lau, A.; Hodgson, P.

2015-12-01

CoralWatch is a conservation organization that is based at the University of Queensland in Australia. Their development of the "Coral Health Chart" standardized the colour of corals for the further investigation of coral health and bleaching. The location of this project is in the NE part of Hong Kong in New Territories. The location faces ShenZhen, a heavily industrialized city, which is known for its pollution of the Pearl River. This area is protected by the Hong Kong Government and the WWF since 1996.Human activities have caused large amounts of greenhouse gasses to be released into the atmosphere. Carbon dioxide has caused the global temperature to rise and made ocean waters more acidic due to ocean respiration. The ocean is a carbon sink for mankind and the effect of severe acidification is negatively affecting marine life. The increase of temperature diminishes the amount of diversity of marine life; the decreasing acidity of the water has eliminated many species of shellfish and sea anemone; the increase of marine exploitation has decreased the diversity of marine life. The release of toxic waste, mainly mercury, waste and plastic products has also polluted the oceans which negatively impact coral reefs and endanger marine life.The data has been collected by observing the colours and discolouration (bleaching) of the corals of approximately 40 colonies per month. The species of coral in Hoi Ha Wan include, Favites flexuosa, Goniopora columna,Leptastrea purpurea, Lithophyllon undulatum, Pavona decussata. and Platygyra acuta (AFCD,1). The evaluation of four years of coralwatch data has shown the bleaching of hard boulder corals in Hoi Ha Wan, Hong Kong, has halted and the reefs are being to show signs of regeneration. Local marine biologists credited the improved situation of the corals to protected status of the area.

Presence of Aspergillus sydowii, a pathogen of gorgonian sea fans in the marine sponge Spongia obscura.

Science.gov (United States)

Ein-Gil, Neta; Ilan, Micha; Carmeli, Shmuel; Smith, Garriet W; Pawlik, Joseph R; Yarden, Oded

2009-06-01

The fungus Aspergillus sydowii is the causative agent of epidemics that affect gorgonian corals (sea fans) and has significantly affected their populations in the Caribbean Sea. We have isolated a strain of A. sydowii from healthy marine sponges (Spongia obscura) collected in Bahamian inshore waters. After its identification on the basis of morphology, molecular markers and chemical profiling followed by pathogenicity tests, we found this strain to be highly similar to a strain isolated from diseased coral, and have shown the capacity of this fungus to persist in sponge environment. Our findings suggest that sponges have the possibility of being reservoirs of a potential marine pathogen.

Exploring the Contribution of Primary Marine Organic Matter to the Arctic Boundary Layer

Science.gov (United States)

Collins, D. B.; Chang, R. Y. W.; Boyer, M.; Abbatt, J.

2016-12-01

The ocean is a significant source of aerosol to the atmosphere, and contributes significantly to the aerosol population especially in remote locations. Both primary and secondary processes connect the ocean to ambient aerosol loadings, but the extent to which the ocean is a source of organic material to the atmosphere is a current topic of scientific debate. The contribution of primary marine aerosol to atmospheric organic matter may have an influence on the water uptake properties and chemical reactivity of primary marine aerosol particles, influencing their climate-relevant properties. In this study, we characterize the contribution of primary marine aerosol to the arctic marine boundary layer using coincident quantitative measurements of freshly-produced sea spray aerosol and ambient marine aerosol to the arctic boundary layer during an expedition aboard the CCGS Amundsen. Sea spray production experiments were conducted during the cruise using a tank fitted with a plunging waterfall apparatus, a technique which has been recently shown to closely mimic the aerosol production behavior of controlled breaking waves. Comparison of the chemical composition of sea spray particles generated from water samples in various locations throughout the Canadian Archipelago will be presented. A tracer analysis of specific compounds known to be important contributors to primary marine organic material are tracked using GC/MS, along with those known to be tracers of biological aerosol and other organic matter sources. Size-segregated trends in tracer concentrations and ratios with inorganic components will be discussed in the context of understanding the contribution of primary organics to the Arctic atmosphere and in comparison with other sources of organic material observed during the ship-board campaign.

Identification of molecular markers associated with Verticillium wilt resistance in alfalfa (Medicago sativa L. using high-resolution melting.

Directory of Open Access Journals (Sweden)

Tiejun Zhang

Full Text Available Verticillium wilt, caused by the soilborne fungus, Verticillium alfalfae, is one of the most serious diseases of alfalfa (Medicago sativa L. worldwide. To identify loci associated with resistance to Verticillium wilt, a bulk segregant analysis was conducted in susceptible or resistant pools constructed from 13 synthetic alfalfa populations, followed by association mapping in two F1 populations consisted of 352 individuals. Simple sequence repeat (SSR and single nucleotide polymorphism (SNP markers were used for genotyping. Phenotyping was done by manual inoculation of the pathogen to replicated cloned plants of each individual and disease severity was scored using a standard scale. Marker-trait association was analyzed by TASSEL. Seventeen SNP markers significantly associated with Verticillium wilt resistance were identified and they were located on chromosomes 1, 2, 4, 7 and 8. SNP markers identified on chromosomes 2, 4 and 7 co-locate with regions of Verticillium wilt resistance loci reported in M. truncatula. Additional markers identified on chromosomes 1 and 8 located the regions where no Verticillium resistance locus has been reported. This study highlights the value of SNP genotyping by high resolution melting to identify the disease resistance loci in tetraploid alfalfa. With further validation, the markers identified in this study could be used for improving resistance to Verticillium wilt in alfalfa breeding programs.

Cloud Feedback Key to Marine Heatwave off Baja California

Science.gov (United States)

Myers, Timothy A.; Mechoso, Carlos R.; Cesana, Gregory V.; DeFlorio, Michael J.; Waliser, Duane E.

2018-05-01

Between 2013 and 2015, the northeast Pacific Ocean experienced the warmest surface temperature anomalies in the modern observational record. This "marine heatwave" marked a shift of Pacific decadal variability to its warm phase and was linked to significant impacts on marine species as well as exceptionally arid conditions in western North America. Here we show that the subtropical signature of this warming, off Baja California, was associated with a record deficit in the spatial coverage of co-located marine boundary layer clouds. This deficit coincided with a large increase in downwelling solar radiation that dominated the anomalous energy budget of the upper ocean, resulting in record-breaking warm sea surface temperature anomalies. Our observation-based analysis suggests that a positive cloud-surface temperature feedback was key to the extreme intensity of the heatwave. The results demonstrate the extent to which boundary layer clouds can contribute to regional variations in climate.

Recent sightings of marine mammals in Andaman Islands, India

Directory of Open Access Journals (Sweden)

Bitopan Malakar

2015-04-01

Full Text Available This study reports opportunistic sightings of marine mammals between August 2013 and January 2014 in the Andaman region.  Seven sightings were recorded during this period out of which one was of a Dugong, which is significant considering its small population size in India and limited data on its distribution and abundance.  The rest were 24 dolphins (Tursiops sp..  Four sightings were of the same pod of dolphins on different days at the same location.  Two sightings occurred during regular coral reef monitoring survey and the other five during fishery resource survey by trawling operations.  These sightings are of great significance as there is a lack of studies on marine mammals from the region.  Sighting records are useful for understanding aggregation site, behaviour, habits and habitat and residency patterns and provide important information for conservation of marine mammals. 

Nannofossil and sequence chronostratigraphy of a marine flooding surface in the Turonian of Trinidad

Energy Technology Data Exchange (ETDEWEB)

Huang, T.C. [Exxon Exploration Company, Houston, TX (United States)

1996-08-01

A multi-well regional study in the Southern basin, Trinidad, reveals a very pronounced marine flooding surface in Turonian- age sediments. This surface is correlatable with global Turonian marine transgressions and genetically ties with the best hydrocarbon source rocks known in Trinidad. The Turonian marine flooding surface yields abundant nannoplankton. Most notable is Lithastrinus moratus Stover, a short-ranging marker of the Lithastrinus evolutionary series. Two morphotypes of Lithastrinus moratus have been found. The more delicate eight-rayed form evolves from Lithastrinus floralls in early Turonian time. Based on observations in Ste. Croix-1, Rocky Palace-1, Rochard-1, Marac-1, Moniga East-15, Iguana River-1, Lizard Spring-I and Antilles Brighton-102, it occurs more frequently in the lower Turonian, but is rare in Trinidad. It has a more robust seven-rayed descendant that appears to be restricted to a narrow interval associated with peak Turonian marine transgression and usually dominates the nannofossil assemblage in the condensed section. The highest stratigraphic occurrence of this form coincides with the lowest occurrence of Marthastentes furcatus based on core sample studies. The age of the marine flooding surface is therefore well constrained to be in zone CC12 and is considered to be correlative with the 89 million year marine flooding surface. The marine flooding surface appears intercontinentally correlatable as it has also been identified in the Arcadia Shale of the Eagle Ford Group in Texas. Because of its wide areal distribution and ease of paleontological recognition, this surface is ideal for regional hydrocarbon source rock mapping, stratal correlation and structural control.

Energy Yield Potential Estimation Using Marine Current Turbine Simulations for the Bosphorus

DEFF Research Database (Denmark)

Yazicioglu, Hasan; Tunc, K. M. Murat; Ozbek, Muammer

2017-01-01

. The differences in elevation and salinity ratios between these two seas cause strong underwater currents. Depending on the morphology of the canal the speed of the flow varies and at some specific locations the energy intensity reaches to sufficient levels where electricity generation by marine current turbines...... becomes economically feasible. In this study, several simulations are performed for a 10 MW marine turbine farm/ cluster whose location is selected by taking into account several factors such as the canal morphology, current speed and passage of vessels. 360 different simulations are performed for 15...... within the selected region, the analyses are performed for three different flow speeds corresponding to 10 % increase and decrease in the average value. For each simulation the annual energy yield and cluster efficiency are calculated....

PCBs and DDE, but not PBDEs, increase with trophic level and marine input in nestling bald eagles

International Nuclear Information System (INIS)

Hamish Elliott, Kyle; Cesh, Lillian S.; Dooley, Jessica A.; Letcher, Robert J.; Elliott, John E.

2009-01-01

Concentrations of persistent contaminants often vary widely among individuals within a population. We hypothesized that such variation was caused mainly by differences in diet (biomagnification) and in coastal systems by the tendency of marine systems to act as contaminant sinks. We examined the relationship between contaminant concentrations and stable isotope ratios in nestling plasma from an apex predator with a particularly broad diet. Our study included freshwater, estuarine, inshore and pelagic breeding sites. Bald eagles (Haliaeetus leucocephalus) at the pelagic marine sites showed high trophic level and marine input, eagles at the freshwater sites showed low trophic level and marine input, and eagles at the estuarine and inshore marine sites had intermediate values. The relationship between trophic level and marine input may reflect longer food chains in pelagic compared to terrestrial ecosystems. ΣPCBs and DDE concentrations generally increased with trophic level and marine input, with the exception of the freshwater sites, while ΣPBDEs, hydroxylated-PBDEs and hydroxylated-PCBs increased with marine input, but were independent of trophic level. The relationships for ΣPCBs and DDE were often slightly stronger with marine input than trophic level, suggesting that oceanographic processes may be more important than trophic level. At freshwater locations, spatial variation may be more important than trophic level due to the heterogeneity of contaminant profiles between feeding locations (lakes, rivers, agricultural fields). Adults had similar isotopic composition to their chicks but higher contamination. Based on nests where prey composition was determined independently, isotopic enrichment values for nestling plasma were 1.6 ± 0.1 (δ 15 N) and - 0.4 ±0.2 (δ 13 C). We conclude that trophic level and marine influence are significant factors influencing PCB and DDE concentrations in eagles. However, trophic level in particular did not influence PBDEs

Blood gases, biochemistry and haematology of Gal?pagos marine iguanas (Amblyrhynchus cristatus)

OpenAIRE

Lewbart, Gregory A.; Hirschfeld, Maximilian; Brothers, J. Roger; Mu?oz-P?rez, Juan Pablo; Denkinger, Judith; Vinueza, Luis; Garc?a, Juan; Lohmann, Kenneth J.

2015-01-01

The marine iguana, Amblyrhynchus cristatus, is an iconic lizard endemic to the Gal?pagos Islands of Ecuador, but surprisingly little information exists on baseline health parameters for this species. We analysed blood samples drawn from 35 marine iguanas captured at three locations on San Crist?bal Island. A portable blood analyser (iSTAT) was used to obtain near-immediate field results for pH, lactate, partial pressure of O2, partial pressure of CO2, bicarbonate (HCO3 ?), percentage O2 satur...

A major QTL and an SSR marker associated with glycoalkaloid content in potato tubers from Solanum tuberosum × S. sparsipilum located at chromosome I

DEFF Research Database (Denmark)

Sørensen, Kirsten Kørup; Kirk, Hanne Grethe; Olsson, Kerstin

2008-01-01

tubers and identify markers that link tightly to this trait. In this study, tubers of a dihaploid BC1 population, originating from a cross between 90-HAF-01 (S. tuberosum 1) and 90-HAG-15 (S. tuberosum 2 × S. sparsipilum), were evaluated for content of α-solanine and α-chaconine (total glycoalkaloid, TGA...... and the HAF parent. Quantitative trait loci for glycoalkaloid production in foliage of different Solanum species have previously been mapped to this chromosome. In the present research, QTLs for α-solanine and α-chaconine content were mapped to the same location as for TGA content. Similar results were...

Indel Group in Genomes (IGG) Molecular Genetic Markers1[OPEN

Science.gov (United States)

Burkart-Waco, Diana; Kuppu, Sundaram; Britt, Anne; Chetelat, Roger

2016-01-01

Genetic markers are essential when developing or working with genetically variable populations. Indel Group in Genomes (IGG) markers are primer pairs that amplify single-locus sequences that differ in size for two or more alleles. They are attractive for their ease of use for rapid genotyping and their codominant nature. Here, we describe a heuristic algorithm that uses a k-mer-based approach to search two or more genome sequences to locate polymorphic regions suitable for designing candidate IGG marker primers. As input to the IGG pipeline software, the user provides genome sequences and the desired amplicon sizes and size differences. Primer sequences flanking polymorphic insertions/deletions are produced as output. IGG marker files for three sets of genomes, Solanum lycopersicum/Solanum pennellii, Arabidopsis (Arabidopsis thaliana) Columbia-0/Landsberg erecta-0 accessions, and S. lycopersicum/S. pennellii/Solanum tuberosum (three-way polymorphic) are included. PMID:27436831

Cook Inlet and Kenai Peninsula, Alaska ESI: M_MAMMAL (Marine Mammal Polygons)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains biological resource data for marine mammals in Cook Inlet and Kenai Peninsula, Alaska. Vector polygons in this data set represent locations of...

75 FR 33244 - Marine Fisheries Advisory Committee; Public Meetings

Science.gov (United States)

2010-06-11

... meeting will be held at the Prospector Hotel, 375 Whittier Street in Juneau, AK 99801; 907-586-3737. FOR... reviews the adequacy of living marine resource policies and programs to meet the needs of commercial and... interests. The complete charter and summaries of prior meetings are located online at http://www.nmfs.noaa...

Tissue specific haemoglobin gene expression suggests adaptation to local marine conditions in North Sea flounder (Platichthys flesus L.)

DEFF Research Database (Denmark)

Larsen, P.F.; Eg Nielsen, Einar; Hansen, M.M.

2013-01-01

Recent genetic analyses of candidate genes and gene expression in marine fishes have provided evidence of local adaptation in response to environmental differences, despite the lack of strong signals of population structure from conventional neutral genetic markers. In this study expression...... in flounder. In gill tissue a plastic response to salinity treatments was observed with general up-regulation of these genes concomitant with higher salinity. For liver tissue a population specific expression differences was observed with lower expression at simulated non-native compared to native salinities...... in high gene flow marine fishes. © 2013 The Genetics Society of Korea...

76 FR 18232 - Marine Mammals; Incidental Take During Specified Activities

Science.gov (United States)

2011-04-01

... Island group, located in the central Aleutian Island chain, declined by about 94 percent; aerial survey... the construction seasons. Supplies, equipment, and personnel would be routed from the proposed beach... Habitat and Marine Mammals Affected by the Activity Three monthly surveys for sea otters were conducted in...

K-12 Schools: The Effect of Public School Choices on Marine Families’ Co-Location Decisions

Science.gov (United States)

2017-03-01

3. REPORT TYPE AND DATES COVERED Master’s thesis 4. TITLE AND SUBTITLE K-12 SCHOOLS: THE EFFECT OF PUBLIC SCHOOL CHOICES ON MARINE FAMILIES’ CO...be educated ? One theory regarding decision-making in general is the rational choice theory . This approach to explaining the process of making...NAVAL POSTGRADUATE SCHOOL MONTEREY, CALIFORNIA THESIS Approved for public release. Distribution is unlimited. K-12 SCHOOLS

High-seas fish wars generate marine reserves.

Science.gov (United States)

Herrera, Guillermo E; Moeller, Holly V; Neubert, Michael G

2016-04-05

The effective management of marine fisheries is an ongoing challenge at the intersection of biology, economics, and policy. One way in which fish stocks-and their habitats-can be protected is through the establishment of marine reserves, areas that are closed to fishing. Although the potential economic benefits of such reserves have been shown for single-owner fisheries, their implementation quickly becomes complicated when more than one noncooperating harvester is involved in fishery management, which is the case on the high seas. How do multiple self-interested actors distribute their fishing effort to maximize their individual economic gains in the presence of others? Here, we use a game theoretic model to compare the effort distributions of multiple noncooperating harvesters with the effort distributions in the benchmark sole owner and open access cases. In addition to comparing aggregate rent, stock size, and fishing effort, we focus on the occurrence, size, and location of marine reserves. We show that marine reserves are a component of many noncooperative Cournot-Nash equilibria. Furthermore, as the number of harvesters increases, (i) both total unfished area and the size of binding reserves (those that actually constrain behavior) may increase, although the latter eventually asymptotically decreases; (ii) total rents and stock size both decline; and (iii) aggregate effort used (i.e., employment) can either increase or decrease, perhaps nonmonotonically.

Marker-assisted selection in forestry species

International Nuclear Information System (INIS)

Butcher, P.; Southerton, S.

2007-01-01

The primary goal of tree breeding is to increase the quantity and quality of wood products from plantations. Major gains have been achieved using recurrent selection in genetically diverse breeding populations to capture additive variation. However, the long generation times of trees, together with poor juvenile-mature trait correlations, have promoted interest in marker-assisted selection (MAS) to accelerate breeding through early selection. MAS relies on identifying DNA markers, which explain a high proportion of variation in phenotypic traits. Genetic linkage maps have been developed for most commercial tree species and these can be used to locate chromosomal regions where DNA markers co-segregate with quantitative traits (quantitative trait loci, QTL). MAS based on QTL is most likely to be used for within-family selection in a limited number of elite families that can be clonally propagated. Limitations of the approach include the low resolution of marker-trait associations, the small proportion of phenotypic variation explained by QTL and the low success rate in validating QTL in different genetic backgrounds and environments. This has led to a change in research focus towards association mapping to identify variation in the DNA sequence of genes directly controlling phenotypic variation (gene-assisted selection, GAS). The main advantages of GAS are the high resolution of marker-trait associations and the ability to transfer markers across families and even species. Association studies are being used to examine the adaptive significance of variation in genes controlling wood formation and quality, pathogen resistance, cold tolerance and drought tolerance. Single nucleotide polymorphisms (SNPs) in these gene sequences that are significantly associated with trait variation can then be used for early selection. Markers for SNPs can be transferred among individuals regardless of pedigree or family relationship, increasing opportunities for their application in

Events Calendar: Smithsonian Marine Ecosystems Exhibit: Smithsonian Marine

Science.gov (United States)

current Smithsonian research on the plants and animals of the Indian River Lagoon and marine environments Station (SMS) at Fort Pierce Smithsonian Marine Station at Fort Pierce Website Search Box History Modeling Ecosystems Virtual Tour Facebook Instagram Twitter SMS Home › Smithsonian Marine

Marine genomics

DEFF Research Database (Denmark)

Oliveira Ribeiro, Ângela Maria; Foote, Andrew David; Kupczok, Anne

2017-01-01

Marine ecosystems occupy 71% of the surface of our planet, yet we know little about their diversity. Although the inventory of species is continually increasing, as registered by the Census of Marine Life program, only about 10% of the estimated two million marine species are known. This lag......-throughput sequencing approaches have been helping to improve our knowledge of marine biodiversity, from the rich microbial biota that forms the base of the tree of life to a wealth of plant and animal species. In this review, we present an overview of the applications of genomics to the study of marine life, from...

Pea Marker Database (PMD) - A new online database combining known pea (Pisum sativum L.) gene-based markers.

Science.gov (United States)

Kulaeva, Olga A; Zhernakov, Aleksandr I; Afonin, Alexey M; Boikov, Sergei S; Sulima, Anton S; Tikhonovich, Igor A; Zhukov, Vladimir A

2017-01-01

Pea (Pisum sativum L.) is the oldest model object of plant genetics and one of the most agriculturally important legumes in the world. Since the pea genome has not been sequenced yet, identification of genes responsible for mutant phenotypes or desirable agricultural traits is usually performed via genetic mapping followed by candidate gene search. Such mapping is best carried out using gene-based molecular markers, as it opens the possibility for exploiting genome synteny between pea and its close relative Medicago truncatula Gaertn., possessing sequenced and annotated genome. In the last 5 years, a large number of pea gene-based molecular markers have been designed and mapped owing to the rapid evolution of "next-generation sequencing" technologies. However, the access to the complete set of markers designed worldwide is limited because the data are not uniformed and therefore hard to use. The Pea Marker Database was designed to combine the information about pea markers in a form of user-friendly and practical online tool. Version 1 (PMD1) comprises information about 2484 genic markers, including their locations in linkage groups, the sequences of corresponding pea transcripts and the names of related genes in M. truncatula. Version 2 (PMD2) is an updated version comprising 15944 pea markers in the same format with several advanced features. To test the performance of the PMD, fine mapping of pea symbiotic genes Sym13 and Sym27 in linkage groups VII and V, respectively, was carried out. The results of mapping allowed us to propose the Sen1 gene (a homologue of SEN1 gene of Lotus japonicus (Regel) K. Larsen) as the best candidate gene for Sym13, and to narrow the list of possible candidate genes for Sym27 to ten, thus proving PMD to be useful for pea gene mapping and cloning. All information contained in PMD1 and PMD2 is available at www.peamarker.arriam.ru.

Characterization of single nucleotide polymorphism markers for eelgrass (Zostera marina)

NARCIS (Netherlands)

Ferber, Steven; Reusch, Thorsten B. H.; Stam, Wytze T.; Olsen, Jeanine L.

We characterized 37 single nucleotide polymorphism (SNP) makers for eelgrass Zostera marina. SNP markers were developed using existing EST (expressed sequence tag)-libraries to locate polymorphic loci and develop primers from the functional expressed genes that are deposited in The ZOSTERA database

Analysis of the Marine Corps Supply Management Unit’s Internal Operations and Effect on the Warfighter

Science.gov (United States)

2016-12-01

centered on the Marine Corps’ forward deployed supply chain management for expeditionary logistics . He used a fictitious case study to stress the...also maintenance, maintenance management , and logistics chain management at the retail supply level and maintenance activities at all levels. (DON...11 Figure 2. United States Marine Corps Supply Management Unit Global Locations

33 CFR 3.25-10 - Sector Hampton Roads Marine Inspection Zone and Captain of the Port Zone.

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Sector Hampton Roads Marine... ZONES, AND CAPTAIN OF THE PORT ZONES Fifth Coast Guard District § 3.25-10 Sector Hampton Roads Marine Inspection Zone and Captain of the Port Zone. Sector Hampton Roads' office is located in Portsmouth, VA. The...

Radionuclide ratios of cesium and strontium in Tarapur marine environment, west coast of India

International Nuclear Information System (INIS)

Baburajan, A.; Rao, D.D.; Chandramouli, S.; Iyer, R.S.; Hegde, A.G.

1999-01-01

Marine environment of Tarapur located 100 km north of Mumbai on the west coast, receives low level liquid waste from Tarapur Atomic Power Station (TAPS) and Fuel Reprocessing Plant (FRP). Radionuclide ratios of cesium and strontium were obtained in source term (the quantum of radioactive liquid waste available for discharge) and different marine samples viz, seawater, sediment, seaweed and marine organisms. A constant ratio of 137 Cs: 134 Cs was observed in seawater and source term. But the ratio of 137 Cs: 90 Sr had wide variation due to selective scavenging of 137 Cs by sedimentary particles at the discharge location. Among the other matrices, sediment showed a higher value of 137 Cs: 134 Cs and 137 Cs: 90 Sr reflecting the cumulative effects of releases from TAPS and FRP and higher distribution coefficient of radiocesium from seawater to sediment. Marine algae indicate a discrimination against sorption of 90 Sr due to the isotopic dilution by stable strontium present in seawater (8mg/l). The marine organisms preying on sediment containing microflora and fauna exhibited radionuclide ratios similar to seawater as the sediment sorbed cesium is not available for assimilation due to the mineral nature of the sediment. The matrices other than sediment indicated the equilibrated activity ratio of radionuclides in seawater which is the recipient medium and reflected the influence of continuous discharge. The sedimentary radionuclide ratio is largely dependent on sorption characteristics of radionuclides and their retention. (author)

Identification of marine-derived lipids in juvenile coho salmon and aquatic insects through fatty acid analysis

Science.gov (United States)

Heintz, Ron A.; Wipfli, Mark S.; Hudson, John P.

2010-01-01

The energetic benefits enjoyed by consumers in streams with salmon runs depend on how those benefits are accrued. Adult Pacific salmon Oncorhynchus spp. deliver significant amounts of nutrients (i.e., nitrogen and phosphorus) and carbon to streams when they spawn and die; these nutrient additions can have demonstrable effects on primary production in streams. Consumption of carcass tissues or eggs provides for direct energy subsidies to consumers and may have significant effects on their condition. In this study, comparisons of juvenile coho salmon O. kisutch and aquatic insects exposed to terrestrial and marine energy sources demonstrated that direct consumption of marine-derived lipids had a significant effect on the lipid reserves of consumers. Direct consumption of marine-derived tissues was verified through fatty acid analysis. Selected aquatic insects and juvenile coho salmon were reared for 6 weeks in experimental streams supplied with terrestrial or marine energy sources. Chironomid midges, nemourid stoneflies, and juvenile coho salmon exposed to the marine energy source altered their fatty acid compositions by incorporating the long-chain polyunsaturated fatty acids that are characteristic of marine fish. The fatty acid composition of baetid mayflies was unaffected. The direct movement of specific fatty markers indicated that direct consumption of marine-derived tissues led to increased energy reserves (triacylglycerols) in consumers. Similar results were obtained for juvenile coho salmon sampled from natural streams before and after the arrival of adult salmon runs. These data indicate that marine-derived lipids from anadromous fish runs are an important source of reserve lipids for consumers that overwinter in streams.

Salmon Aquaculture and Antimicrobial Resistance in the Marine Environment

Science.gov (United States)

Buschmann, Alejandro H.; Tomova, Alexandra; López, Alejandra; Maldonado, Miguel A.; Henríquez, Luis A.; Ivanova, Larisa; Moy, Fred; Godfrey, Henry P.; Cabello, Felipe C.

2012-01-01

Antimicrobials used in salmon aquaculture pass into the marine environment. This could have negative impacts on marine environmental biodiversity, and on terrestrial animal and human health as a result of selection for bacteria containing antimicrobial resistance genes. We therefore measured the numbers of culturable bacteria and antimicrobial-resistant bacteria in marine sediments in the Calbuco Archipelago, Chile, over 12-month period at a salmon aquaculture site approximately 20 m from a salmon farm and at a control site 8 km distant without observable aquaculture activities. Three antimicrobials extensively used in Chilean salmon aquaculture (oxytetracycline, oxolinic acid, and florfenicol) were studied. Although none of these antimicrobials was detected in sediments from either site, traces of flumequine, a fluoroquinolone antimicrobial also widely used in Chile, were present in sediments from both sites during this period. There were significant increases in bacterial numbers and antimicrobial-resistant fractions to oxytetracycline, oxolinic acid, and florfenicol in sediments from the aquaculture site compared to those from the control site. Interestingly, there were similar numbers of presumably plasmid-mediated resistance genes for oxytetracycline, oxolinic acid and florfenicol in unselected marine bacteria isolated from both aquaculture and control sites. These preliminary findings in one location may suggest that the current use of large amounts of antimicrobials in Chilean aquaculture has the potential to select for antimicrobial-resistant bacteria in marine sediments. PMID:22905164

Salmon aquaculture and antimicrobial resistance in the marine environment.

Directory of Open Access Journals (Sweden)

Alejandro H Buschmann

Full Text Available Antimicrobials used in salmon aquaculture pass into the marine environment. This could have negative impacts on marine environmental biodiversity, and on terrestrial animal and human health as a result of selection for bacteria containing antimicrobial resistance genes. We therefore measured the numbers of culturable bacteria and antimicrobial-resistant bacteria in marine sediments in the Calbuco Archipelago, Chile, over 12-month period at a salmon aquaculture site approximately 20 m from a salmon farm and at a control site 8 km distant without observable aquaculture activities. Three antimicrobials extensively used in Chilean salmon aquaculture (oxytetracycline, oxolinic acid, and florfenicol were studied. Although none of these antimicrobials was detected in sediments from either site, traces of flumequine, a fluoroquinolone antimicrobial also widely used in Chile, were present in sediments from both sites during this period. There were significant increases in bacterial numbers and antimicrobial-resistant fractions to oxytetracycline, oxolinic acid, and florfenicol in sediments from the aquaculture site compared to those from the control site. Interestingly, there were similar numbers of presumably plasmid-mediated resistance genes for oxytetracycline, oxolinic acid and florfenicol in unselected marine bacteria isolated from both aquaculture and control sites. These preliminary findings in one location may suggest that the current use of large amounts of antimicrobials in Chilean aquaculture has the potential to select for antimicrobial-resistant bacteria in marine sediments.

A summary of global 129I in marine waters

International Nuclear Information System (INIS)

He Peng; Aldahan, A.; Possnert, G.; Hou, X.L.

2013-01-01

Despite the many investigations concerning the occurrence of anthropogenic iodine-129 in the atmosphere, terrestrial and marine environments, there is a lack of a comprehensive collection of data on the distribution of the isotope in marine waters. The temporal and spatial variability of anthropogenic 129 I is strongly linked to the major point sources in the Irish Sea and the English Channel and the global marine spreading pathways are partly outlined from these sources. The temporal evolution is still, however, not well defined when transport and dissipation are considered in the different oceans and ocean compartments. We here summarize available published literature data on 129 I temporal and spatial distribution in the global marine water. The results show presence of numerous data sets for the North Atlantic and Arctic Oceans where strong variability in terms of water depth, time and location also occur. Scarcity of data on 129 I from the Pacific, Indian and South Atlantic Oceans demonstrates gaps in the coverage of the isotope spatial extent. These shortcomings in the spatial coverage may relate to the understanding that the anthropogenic 129 I signal will take a long time to be transported, if at all, from the North Atlantic into other oceans. Data from recent expeditions in the Southern oceans and the Geotraces ocean profiling will reveal additional information about 129 I distribution in the marine waters.

The influence of persistent organic pollutants in the traditional Inuit diet on markers of inflammation

DEFF Research Database (Denmark)

Schæbel, L K; Bonefeld-Jørgensen, E C; Vestergaard, H

2017-01-01

influence on both YKL-40 and hsCRP by ΣOCP (psmoking. POP levels were associated with the intake of the traditional Inuit diet and with markers of inflammation. This supports a pro-inflammatory role of POPs......Concentrations of persistent organic pollutants (POPs) are high in Inuit living predominately on the traditional marine diet. Adverse effects of POPs include disruption of the immune system and cardiovascular diseases that are frequent in Greenland Inuit. We aimed to assess the association between...... exposure to POPs from the marine diet and inflammation, taking into account other factors such as vitamin D. We invited Inuit and non-Inuit living in settlements or the town in rural East Greenland or in the capital city Nuuk. Participants completed a food frequency questionnaire and donated a blood sample...

Global patterns of extinction risk in marine and non-marine systems.

Science.gov (United States)

Webb, Thomas J; Mindel, Beth L

2015-02-16

Despite increasing concern over the effects of human activities on marine ecosystems, extinction in the sea remains scarce: 19-24 out of a total of >850 recorded extinctions implies a 9-fold lower marine extinction rate compared to non-marine systems. The extent of threats faced by marine systems, and their resilience to them, receive considerable attention, but the detectability of marine extinctions is less well understood. Before its extinction or threat status is recorded, a species must be both taxonomically described and then formally assessed; lower rates of either process for marine species could thus impact patterns of extinction risk, especially as species missing from taxonomic inventories may often be more vulnerable than described species. We combine data on taxonomic description with conservation assessments from the International Union for Conservation of Nature (IUCN) to test these possibilities across almost all marine and non-marine eukaryotes. We find that the 9-fold lower rate of recorded extinctions and 4-fold lower rate of ongoing extinction risk across marine species can be explained in part by differences in the proportion of species assessed by the IUCN (3% cf. 4% of non-marine species). Furthermore, once taxonomic knowledge and conservation assessments pass a threshold level, differences in extinction risk between marine and non-marine groups largely disappear. Indeed, across the best-studied taxonomic groups, there is no difference between marine and non-marine systems, with on average between 20% and 25% of species being threatened with extinction, regardless of realm. Copyright © 2015 Elsevier Ltd. All rights reserved.

A multifaceted comparison of ArcGIS and MapMarker for automated geocoding

Directory of Open Access Journals (Sweden)

Sanjaya Kumar

2012-11-01

Full Text Available Geocoding is increasingly being used for public health surveillance and spatial epidemiology studies. Public health departments in the United States of America (USA often use this approach to investigate disease outbreaks and clusters or assign health records to appropriate geographic units. We evaluated two commonly used geocoding software packages, ArcGIS and MapMarker, for automated geocoding of a large number of residential addresses from health administrative data in New York State, USA to better understand their features, performance and limitations. The comparison was based on three metrics of evaluation: completeness (or match rate, geocode similarity and positional accuracy. Of the 551,798 input addresses, 318,302 (57.7% were geocoded by MapMarker and 420,813 (76.3% by the ArcGIS composite address locator. High similarity between the geocodes assigned by the two methods was found, especially in suburban and urban areas. Among addresses with a distance of greater than 100 m between the geocodes assigned by the two packages, the point assigned by ArcGIS was closer to the associated parcel centroid (“true” location compared with that assigned by MapMarker. In addition, the composite address locator in ArcGIS allows users to fully utilise available reference data, which consequently results in better geocoding results. However, the positional differences found were minimal, and a large majority of addresses were placed on the same locations by both geocoding packages. Using both methods and combining the results can maximise match rates and save the time needed for manual geocoding.

A multifaceted comparison of ArcGIS and MapMarker for automated geocoding.

Science.gov (United States)

Kumar, Sanjaya; Liu, Ming; Hwang, Syni-An

2012-11-01

Geocoding is increasingly being used for public health surveillance and spatial epidemiology studies. Public health departments in the United States of America (USA) often use this approach to investigate disease outbreaks and clusters or assign health records to appropriate geographic units. We evaluated two commonly used geocoding software packages, ArcGIS and MapMarker, for automated geocoding of a large number of residential addresses from health administrative data in New York State, USA to better understand their features, performance and limitations. The comparison was based on three metrics of evaluation: completeness (or match rate), geocode similarity and positional accuracy. Of the 551,798 input addresses, 318,302 (57.7%) were geocoded by MapMarker and 420,813 (76.3%) by the ArcGIS composite address locator. High similarity between the geocodes assigned by the two methods was found, especially in suburban and urban areas. Among addresses with a distance of greater than 100 m between the geocodes assigned by the two packages, the point assigned by ArcGIS was closer to the associated parcel centroid ("true" location) compared with that assigned by MapMarker. In addition, the composite address locator in ArcGIS allows users to fully utilise available reference data, which consequently results in better geocoding results. However, the positional differences found were minimal, and a large majority of addresses were placed on the same locations by both geocoding packages. Using both methods and combining the results can maximise match rates and save the time needed for manual geocoding.

Use of Biochemical Markers for the Assessment of Organic Pollutant Contamination of the Vltava river, Czech Republic

Directory of Open Access Journals (Sweden)

Marcela Havelková

2009-01-01

Full Text Available In this study, selected biochemical markers - cytochrome P450 (CYP 450, ethoxyresorufin-O-deethylase (EROD, glutathione S-transferase (GST and glutathione (GSH - were measured in chub (Leuciscus cephalus L. liver samples obtained from three locations on the Vltava river (Podolí, Podbaba and Vraňany and from a control location nmicals commonly known as their inducers. These include polychlorinated biphenyls, hexachlorobenzene and octachlorostyrene measured in chub muscle and polyaromatic hydrocarbons measured in bear Vodňany. The levels of selected biomarkers should correlate with the concentration of cheottom sediments obtained from the same locations. The highest EROD activity (median 101.37 pmol min-1 mg-1 protein, GST activity (median 42.82 nmol min-1 mg-1 protein, and GSH concentration (median 8.01 nmol mg-1 protein were found in fish liver from the Podbaba location. There were no significant differences in CYP P450 level or EROD activity among the different locations. In Podbaba, GST activity (P P < 0.001 were significantly higher than in the control location. The results of these analyses were correlated and a significant correlation was found between biochemical markers and their inducers. The results show that the use of biochemical markers in water quality assessment is a convenient method that can supplement classical chemical monitoring.

Accuracy of localizing radiopaque markers by abdominal radiography and correlation between their gastric emptying rate and that of a canned food in dogs

International Nuclear Information System (INIS)

Guilford, W.G.; Lawoko, C.R.O.; Allen, F.J.

1997-01-01

Objectives: To determine accuracy of abdominal radiography in locating radiopaque markers in the gastrointestinal tract and to assess correlation between gastric emptying rate of radiopaque markers and that of canned food. Animals: 17 healthy dogs. Procedure: Dogs were fed thirty 1.5-mm markers and ten 5-mm markers mixed in sufficient food to meet 25% of their daily caloric intake. They were then euthanatized by administration of an overdose of barbiturate at 1, 2, 5, 8, or 12 hours after eating and the abdomen was radiographed. The stomach, small intestine, and large intestine were then separated and radiographed in isolation. The wet and dry weights of the stomach contents were determined. The apparent and actual locations of the markers and the gastric emptying rates of markers, wet matter, and dry matter were compared, using rank correlation. Results: All comparisons indicated significant (P 0.92). The mean difference between the apparent and actual locations of the markers was < 3% for all comparisons. The mean difference between the percentage of small markers and large markers retained in the stomach and that of dry matter was 7.8 (SD, 6.2; range, 0 to 18)% and 11.9 (SD, 12.5; range, 0 to 44)%, respectively. Conclusions: The gastric emptying and orocolic transit rates of the markers were accurately predicted by abdominal radiography. The gastric emptying rate of the diet and the small markers and, to a lesser extent, the large markers was closely correlated. Clinical Relevance: When fed with a special canned food diet, radiopaque markers can be used to assess the gastric emptying rate of food with sufficient accuracy for clinical purposes

Effects of Biodiesel Blend on Marine Fuel Characteristics for Marine Vessels

Directory of Open Access Journals (Sweden)

Cherng-Yuan Lin

2013-09-01

Full Text Available Biodiesel produced from vegetable oils, animal fats and algae oil is a renewable, environmentally friendly and clean alternative fuel that reduces pollutants and greenhouse gas emissions in marine applications. This study investigates the influence of biodiesel blend on the characteristics of residual and distillate marine fuels. Adequate correlation equations are applied to calculate the fuel properties of the blended marine fuels with biodiesel. Residual marine fuel RMA has inferior fuel characteristics compared with distillate marine fuel DMA and biodiesel. The flash point of marine fuel RMA could be increased by 20% if blended with 20 vol% biodiesel. The sulfur content of residual marine fuel could meet the requirement of the 2008 MARPOL Annex VI Amendment by blending it with 23.0 vol% biodiesel. In addition, the kinematic viscosity of residual marine fuel could be reduced by 12.9% and the carbon residue by 23.6% if 20 vol% and 25 vol% biodiesel are used, respectively. Residual marine fuel blended with 20 vol% biodiesel decreases its lower heating value by 1.9%. Moreover, the fuel properties of residual marine fuel are found to improve more significantly with biodiesel blending than those of distillate marine fuel.

Marine ecology

International Nuclear Information System (INIS)

Anon.

1977-01-01

Studies on marine ecology included marine pollution; distribution patterns of Pu and Am in the marine waters, sediments, and organisms of Bikini Atoll and the influence of physical, chemical, and biological factors on their movements through marine biogeochemical systems; transfer and dispersion of organic pollutants from an oil refinery through coastal waters; transfer of particulate pollutants, including sediments dispersed during construction of offshore power plants; and raft culture of the mangrove oysters

Biochemical Markers for Assessing Aquatic Contamination

Directory of Open Access Journals (Sweden)

Zdeňka Svobodová

2007-11-01

Full Text Available Biochemical markers, specifically enzymes of the first phase of xenobiotic transformation - cytochrome P450 and ethoxyresorufin-O-deethylase (EROD - were used to determine the quantities of persistent organic pollutants (POPs in fish muscle (PCB, HCB, HCH, OCS, DDT. Eight rivers were monitored (Orlice, Chrudimka, Cidlina, Jizera, Vltava, Ohře and Bílina; and the River Blanice was used as a control. The indicator species selected was the chub (Leuciscus cephalus L.. There were no significant differences in cytochrome P450 content between the locations monitored. The highest concentration of cytochrome P450 in fish liver was in the Vltava (0.241 nmol mg-1 protein, and the lowest was in the Orlice (0.120 nmol mg-1 protein. Analysis of EROD activity showed a significant difference between the Blanice and the Vltava (P< 0.05, and also between the Orlice and the Vltava (P< 0.01, the Orlice and the Bílina (P< 0.01, and the Orlice and the Ohře (P< 0.05. The highest EROD activity in fish liver was in the Vltava (576.4 pmol min-1 mg-1 protein, and the lowest was in the Orlice (63.05 pmol min-1 mg-1 protein. In individual locations, results of chemical monitoring and values of biochemical markers were compared. A significant correlation (P< 0.05 was found between biochemical markers and OCS, and PCB. Among the tributaries studied those that contaminated the Elbe most were the Vltava and the Bílina. These tributaries should not be considered the main sources of industrial contamination of the River Elbe, because the most important contamination sources were along the river Elbe itself.

Antarctic marine sediments as fingerprints of pollution migration

International Nuclear Information System (INIS)

Waheed, S.; Ahmad, S.; Rahman, A.; Qureshi, I.H.

2001-01-01

Forty elements in 21 coastal marine sediment samples collected during the second Antarctic scientific expedition from 18 different sites of Brekilen area located at the coast of Antarctica were analysed by instrumental neutron activation analysis (INAA) to detect eventual pollution. Radio-assay schemes for three sets of elements after neutron irradiation and cooling were evolved to avoid matrix effects. Data have been compared with those for sediments of various stations at Antarctica and two other regions in different continents. Lower concentration of certain elements in the Antarctic sediments reflects less environmental exposition. Enrichment factors (EF) were calculated for all the elements using the earth crust as reference matrix, based on elemental values by MASON, TAYLOR and WEDEPOHL which show a normal pattern near to unity expect for Ag and Br. The data obtained could also serve as a reference point from which changes in the global environment can be studied. The quality assurance of data was performed using standard reference materials (SRMs) of a similar matrix (IAEA Marine Sediment SD-M/TM and Chinese Marine Sediment GBW 07313). (author)

Oxidative stress and antioxidant indices of marine alga Porphyra vietnamensis

Digital Repository Service at National Institute of Oceanography (India)

Pise, N.M.; Gaikwad, D.K.; Jagtap, T.G.

stress markers. Antioxidant defences were measured as catalase (CAT), glutathione S-transferase (GST) and ascorbic acid (AsA), in order to understand their dissimilarity with respect to environmental conditions (pollution levels) from selective locations...

Selecting optimum locations for co-located wave and wind energy farms. Part I: The Co-Location Feasibility index

International Nuclear Information System (INIS)

Astariz, S.; Iglesias, G.

2016-01-01

Highlights: • New approach to identifying suitable sites for co-located wave and wind farms. • A new tool, the Co-Location Feasibility (CLF) index, is defined. • Its application is analysed by means of a case study off the Danish coast. • Hindcast and measured wave and wind data from 2005 to 2015 are used. • Third-generation models of winds and waves (WAsP and SWAN) are used. - Abstract: Marine energy is poised to play a fundamental role in meeting renewable energy and carbon emission targets thanks to the abundant, and still largely untapped, wave and tidal resources. However, it is often considered difficult and uneconomical – as is usually the case of nascent technologies. Combining various renewables, such as wave and offshore wind energy, has emerged as a solution to improve their competitiveness and in the process overcome other challenges that hinder their development. The objective of this paper is to develop a new approach to identifying suitable sites for co-located wave and wind farms based on the assessment of the available resources and technical constraints, and to illustrate its application by means of a case study off the Danish coast – an area of interest for combining wave and wind energy. The method is based on an ad hoc tool, the Co-Location Feasibility (CLF) index, and is based on a joint characterisation of the wave and wind resources, which takes into account not only the available power but also the correlation between both resources and the power variability. The analysis is carried out based on hindcast data and observations from 2005 to 2015, and using third-generation models of winds and waves – WAsP and SWAN, respectively. Upon selection and ranking, it is found that a number of sites in the study region are indeed suited to realising the synergies between wave and offshore wind energy. The approach developed in this work can be applied elsewhere.

Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot

Science.gov (United States)

van der Meer, M. H.; Berumen, M. L.; Hobbs, J.-P. A.; van Herwerden, L.

2015-06-01

Marine protected areas (MPAs) aim to mitigate anthropogenic impacts by conserving biodiversity and preventing overfishing. The effectiveness of MPAs depends on population connectivity patterns between protected and non-protected areas. Remote islands are endemism hotspots for coral reef fishes and provide rare examples of coral reefs with limited fishing pressure. This study explored population genetic connectivity across a network of protected and non-protected areas for the endemic wrasse, Coris bulbifrons, which is listed as "vulnerable" by the IUCN due to its small, decreasing geographic range and declining abundance. Mitochondrial DNA (mtDNA) and microsatellite DNA (msatDNA) markers were used to estimate historic and contemporary gene flow to determine the level of population self-replenishment and to measure genetic and genotypic diversity among all four locations in the species range (south-west Pacific Ocean)—Middleton Reef (MR), Elizabeth Reef (ER), Lord Howe Island (LHI) and Norfolk Island (NI). MPAs exist at MR and LHI and are limited or non-existent at ER and NI, respectively. There was no obvious differentiation in mtDNA among locations, however, msatDNA revealed differentiation between the most peripheral (NI) and all remaining locations (MR, ER and LHI). Despite high mtDNA connectivity ( M = 259-1,144), msatDNA connectivity was limited ( M = 3-9) with high self-replenishment (68-93 %) at all locations. NI is the least connected and heavily reliant on self-replenishment, and the absence of MPAs at NI needs to be rectified to ensure the persistence of endemic species at this location. Other endemic fishes exhibit similar patterns of high self-replenishment across the four locations, indicating that a single spatial management approach consisting of a MPA network protecting part of each location could provide reasonable protection for these species. Thus, the existing network of MPAs at this endemic hotspot appears adequate at some locations, but not

Bishop pine (Pinus muricata) of inland Marin County, CA

Science.gov (United States)

Constance I. Millar

1986-01-01

The locations and characteristics of five, small, previously undescribed stands of bishop pine (Pinus muricata) in central Marin Co., California, are reported. Three stands lie on dry sites in the Kent Lake Drainage north of Mt. Tamalpais: San Geronimo Ridge, a spur ridge above Little Carson Cr., and Oat Hill. These stands are anomalous in occurring...

Sample positioning in neutron diffraction experiments using a multi-material fiducial marker

Energy Technology Data Exchange (ETDEWEB)

Marais, D., E-mail: Deon.Marais@necsa.co.za [Research and Development Division, South African Nuclear Energy Corporation (Necsa) SOC Limited, PO Box 582, Pretoria 0001 (South Africa); School of Mechanical and Nuclear Engineering, North-West University, Potchefstroom 2520 (South Africa); Venter, A.M., E-mail: Andrew.Venter@necsa.co.za [Research and Development Division, South African Nuclear Energy Corporation (Necsa) SOC Limited, PO Box 582, Pretoria 0001 (South Africa); Faculty of Agriculture Science and Technology, North-West University, Mahikeng 2790 (South Africa); Markgraaff, J., E-mail: Johan.Markgraaff@nwu.ac.za [School of Mechanical and Nuclear Engineering, North-West University, Potchefstroom 2520 (South Africa); James, J., E-mail: Jon.James@open.ac.uk [Faculty of Mathematics, Computing and Technology, The Open University, Milton Keynes, MK76AA England (United Kingdom)

2017-01-01

An alternative sample positioning method is reported for use in conjunction with sample positioning and experiment planning software systems deployed on some neutron diffraction strain scanners. In this approach, the spherical fiducial markers and location trackers used with optical metrology hardware are replaced with a specifically designed multi-material fiducial marker that requires one diffraction measurement. In a blind setting, the marker position can be determined within an accuracy of ±164 µm with respect to the instrument gauge volume. The scheme is based on a pre-determined relationship that links the diffracted peak intensity to the absolute positioning of the fiducial marker with respect to the instrument gauge volume. Two methods for establishing the linking relationship are presented, respectively based on fitting multi-dimensional quadratic functions and a cross-correlation artificial neural network.

Phase I Marine and Terrestrial Cultural Resources Survey of 13 Project Items Located on Marsh Island, Iberia Parish, Louisiana

National Research Council Canada - National Science Library

Barr, William

1999-01-01

This report presents the results of Phase I cultural resources survey and archeological inventory of two marine and 11 terrestrial project items on and near Marsh Island in Iberia Parish, Louisiana...

Bacterial corrosion in marine sediments: influence of cathodic protection

International Nuclear Information System (INIS)

Therene, Martine

1988-01-01

In order to protect offshore structures from marine corrosion, cathodic protection is widely applied via sacrificial anodes (for example zinc or aluminium) or impressed current. In aerated seawater, steel is considered to be protected when a potential of -8050 mV/Cu.CuSO 4 is achieved. In many cases, however this potential must be lowered, due to the activity of microorganisms and more specially sulfate-reducing bacteria (SRB). SRB are obligate anaerobes using sulphate as electron acceptor with resultant production of sulphide. Some of them are also able to use hydrogen as energy source, causing cathodic depolarization of steel surfaces. An experiment was performed to analyze the relation between SRB activity and use of different cathodic potentials applied to mild steel samples in marine sediments. Analytical techniques employed included lipid bio-markers and electrochemical methods. Results indicated an evolution of the bacterial community structure both on the steel and in the sediment, as a function of time and potential. The results also show that cathodically produced hydrogen promotes the growth of SRB (author) [fr

Limited genetic diversity among Sarcocystis neurona strains infecting southern sea otters precludes distinction between marine and terrestrial isolates.

Science.gov (United States)

Wendte, J M; Miller, M A; Nandra, A K; Peat, S M; Crosbie, P R; Conrad, P A; Grigg, M E

2010-04-19

Sarcocystis neurona is an apicomplexan parasite identified as a cause of fatal neurological disease in the threatened southern sea otter (Enhydra lutris nereis). In an effort to characterize virulent S. neurona strains circulating in the marine ecosystem, this study developed a range of markers relevant for molecular genotyping. Highly conserved sequences within the 18S ribosomal gene array, the plastid-encoded RNA polymerase (RPOb) and the cytochrome c oxidase subunit 1 mitochondrial gene (CO1) were assessed for their ability to distinguish isolates at the genus and species level. For within-species comparisons, five surface antigens (SnSAG1-SnSAG5) and one high resolution microsatellite marker (Sn9) were developed as genotyping markers to evaluate intra-strain diversity. Molecular analysis at multiple loci revealed insufficient genetic diversity to distinguish terrestrial isolates from strains infecting marine mammals. Furthermore, SnSAG specific primers applied against DNA from the closely related species, Sarcocystis falcatula, lead to the discovery of highly similar orthologs to SnSAG2, 3, and 4, calling into question the specificity of diagnostic tests based on these antigens. The results of this study suggest a population genetic structure for S. neurona similar to that reported for the related parasite, Toxoplasma gondii, dominated by a limited number of successful genotypes. Published by Elsevier B.V.

Marine renewables: Exploring the opportunity for combining wind and wave energy

International Nuclear Information System (INIS)

Azzellino, Arianna; Riefolo, Luigia; Lanfredi, Caterina; Vicinanza, Diego

2015-01-01

Resource diversity is considered the key to manage the intrinsic variability of renewable energy sources and to lower their system integration costs. The expected development of Marine Renewable Energy Installations is likely to result in further transformation of coastal sea areas, already heavily impacted. In this perspective, the combination of different renewables and their potential impact on the environment must be evaluated in the context of the existing pressures. In this study the opportunity of co-locating offshore wind turbines and wave energy converters and their environmental sustainability is evaluated through a quantitative Marine Spatial Planning (MSP) approach. [it

Sustainable use of marine resources through offshore wind and mussel farm co-location

DEFF Research Database (Denmark)

Di Tullio, Giacomo R.; Mariani, Patrizio; Benassai, Guido

2018-01-01

wind farms and open-water mussel cultivation. An index of co-location sustainability (SI) was developed based on the application of MCE technique constructed with physical and biological parameters on the basis of remote-sensing data. The relevant physical factors considered were wind velocity, depth...... range, concerning the site location for energy production, and sea surface temperature anomaly. The biological variables used were Chlorofill-a (as a measurement of the productivity) and Particle Organic Carbon(POC) concentration, in order to assess their influence on the probable benefits and complete...

Marine pollution

International Nuclear Information System (INIS)

Albaiges, J.

1989-01-01

This book covers the following topics: Transport of marine pollutants; Transformation of pollutants in the marine environment; Biological effects of marine pollutants; Sources and transport of oil pollutants in the Persian Gulf; Trace metals and hydrocarbons in Syrian coastal waters; and Techniques for analysis of trace pollutants

Marine hydrogeology: recent accomplishments and future opportunities

Science.gov (United States)

Fisher, A. T.

2005-03-01

Marine hydrogeology is a broad-ranging scientific discipline involving the exploration of fluid-rock interactions below the seafloor. Studies have been conducted at seafloor spreading centers, mid-plate locations, and in plate- and continental-margin environments. Although many seafloor locations are remote, there are aspects of marine systems that make them uniquely suited for hydrologic analysis. Newly developed tools and techniques, and the establishment of several multidisciplinary programs for oceanographic exploration, have helped to push marine hydrogeology forward over the last several decades. Most marine hydrogeologic work has focused on measurement or estimation of hydrogeologic properties within the shallow subsurface, but additional work has emphasized measurements of local and global fluxes, fluid source and sink terms, and quantitative links between hydrogeologic, chemical, tectonic, biological, and geophysical processes. In addition to summarizing selected results from a small number of case studies, this paper includes a description of several new experiments and programs that will provide outstanding opportunities to address fundamental hydrogeologic questions within the seafloor during the next 20-30 years. L'hydrogéologie marine est une large discipline scientifique impliquant l' exploration des interactions entre les fluides et les roches sous les fonds marins. Des études ont été menées dans les différents environnements sous-marins (zone abyssale, plaque océanique, marges continentales). Bien que de nombreux fonds marins soient connus, il existe des aspects des systèmes marins qui les rendent inadaptés à l'analyse hydrologique. De nouveaux outils et techniques, et la mise en oeuvre de nombreux programmes multidisciplinaires d'exploration océanographique, ont aidé à pousser en avant l'hydrogéologie marine ces dix dernières années. La plus part des études hydrogéologiques se sont concentrées jusqu'à présent sur la mesure ou

The Marine Realms Information Bank family of digital libraries: access to free online information for coastal and marine science

Science.gov (United States)

Lightsom, Frances L.; Allwardt, Alan O.

2007-01-01

Searching the World Wide Web for reliable information about specific topics or locations can be frustrating: too many hits, too little relevance. A well-designed digital library, offering a carefully selected collection of online resources, is an attractive alternative to web search engines. The U.S. Geological Survey (USGS) provides three digital libraries for coastal and marine science to serve the needs of a diverse audience--scientists, public servants, educators, and the public.

Marine environmental pollution stress detection through direct viable counts of bacteria

Digital Repository Service at National Institute of Oceanography (India)

Ramaiah, N.; Kenkre, V.D.; Verlecar, X.N.

usefulfordeterminingmetabolicallyactivebacterialcells [7,8]. It is a proven method to understand the hetero- trophicpotentialofmicrobialassemblagesinthemarine environment[9].Itiseasytoperformandyieldshighly reproducibleresults.DVChasbeenthemostemployed techniquetoassessbacterialmetabolicactivitystate... stress on microbial communities. From the extensive fieldandlaboratoryanalyses,wereportonthereliability of DVC for sensing risks in the marine environment causedbyindustrialactivities. 2. Materials and methods 2.1. Sampling locations...

33 CFR 165.812 - Security Zones; Lower Mississippi River, Southwest Pass Sea Buoy to Mile Marker 96.0, New Orleans...

Science.gov (United States)

2010-07-01

... River, Southwest Pass Sea Buoy to Mile Marker 96.0, New Orleans, LA. 165.812 Section 165.812 Navigation..., Southwest Pass Sea Buoy to Mile Marker 96.0, New Orleans, LA. (a) Location. Within the Lower Mississippi... Lower Mississippi River mile marker 96.0 in New Orleans, Louisiana. These moving security zones...

Neutron activation analysis studies of marine biological species and related marine sediments

International Nuclear Information System (INIS)

Guinn, V.P.; Di Casa, M.; de Goeij, J.J.M.; Young, D.R.

1974-01-01

To assess the effects, if any, of elemental pollution of the Pacific Ocean from the major Southern California sewage outfalls, samples of ocean sediments were obtained and specimens of Dover Sole were caught in a number of locations. Liver tissue samples from Dover Sole specimens were analyzed for 12 elements and sediment samples for 4 elements. Although a number of the elements were highly concentrated in the surface sediments in the heavily-polluted areas, the Dover Sole showed no evidence of picking up any of the 12 elements from these polluted sediments. Sediment profiles, versus depth, (0-34 cm) were also determined for As, Sb, Se, and Hg. Stemming partly from the results of the NSF Baseline Study, the Southern California Coastal Water Research Project (SCCWRP) became interested in a more intensive multi-element study of marine biological species and ocean sediments off the coast of Southern California. The purpose of this study was to assess the effects, if any, of a number of selected elements of interest being discharged into the Pacific Ocean from the principal sewage outfalls in the Southern California (Los Angeles) area upon marine biological species. The 12 elements selected for study were Cr, Fe, Co, Cu, Zn, As, Se, Mo, Ag, Cd, Sb, and Hg. Since a number of these elements were not amenable to purely instrumental NAA measurements, a suitable post-irradiation radiochemical separation procedure was devised, thoroughly tested, and then applied to 39 samples of liver tissue from specimens of Dover Sole caught in non-polluted, slightly-polluted, fairly-polluted, and heavily-polluted areas along the coast. A number of surface sediment samples from these same locations were also analyzed, by both instrumental and radiochemical NAA. In the following sections, the samples analyzed are cited, the procedures developed and employed are described, the results obtained are presented, and the conclusions reached are discussed

Visualizing Patterns of Marine Eukaryotic Diversity from Metabarcoding Data Using QIIME.

Science.gov (United States)

Leray, Matthieu; Knowlton, Nancy

2016-01-01

PCR amplification followed by deep sequencing of homologous gene regions is increasingly used to characterize the diversity and taxonomic composition of marine eukaryotic communities. This approach may generate millions of sequences for hundreds of samples simultaneously. Therefore, tools that researchers can use to visualize complex patterns of diversity for these massive datasets are essential. Efforts by microbiologists to understand the Earth and human microbiomes using high-throughput sequencing of the 16S rRNA gene has led to the development of several user-friendly, open-source software packages that can be similarly used to analyze eukaryotic datasets. Quantitative Insights Into Microbial Ecology (QIIME) offers some of the most helpful data visualization tools. Here, we describe functionalities to import OTU tables generated with any molecular marker (e.g., 18S, COI, ITS) and associated metadata into QIIME. We then present a range of analytical tools implemented within QIIME that can be used to obtain insights about patterns of alpha and beta diversity for marine eukaryotes.

DNA marker mining of ILSTS035 microsatellite locus on ...

Indian Academy of Sciences (India)

Unknown

We describe tests for detecting and locating quantitative trait loci (QTL) for traits in Hanwoo cattle. From results of a permutation test to detect QTL for marbling, we selected the microsatellite locus ILSTS035 on chromosome 6 for further analysis. K-means clustering analysis applied to five traits and nine DNA markers in ...

The fungal and acritarch events as time markers for the latest Permian mass extinction: An update

Directory of Open Access Journals (Sweden)

Michael R. Rampino

2018-01-01

Full Text Available The latest Permian extinction (252 Myr ago was the most severe in the geologic record. On land, widespread Late Permian gymnosperm/seed-fern dominated forests appear to have suffered rapid and almost complete destruction, as evidenced by increased soil erosion and changes in fluvial style in deforested areas, signs of wildfires, replacement of trees by lower plants, and almost complete loss of peat-forming and fire-susceptible vegetation. Permian–Triassic boundary strata at many sites show two widespread palynological events in the wake of the forest destruction: The fungal event, evidenced by a thin zone with >95% fungal cells (Reduviasporonites and woody debris, found in terrestrial and marine sediments, and the acritarch event, marked by the sudden flood of unusual phytoplankton in the marine realm. These two events represent the global temporary explosive spread of stress-tolerant and opportunistic organisms on land and in the sea just after the latest Permian disaster. They represent unique events, and thus they can provide a time marker in correlating latest Permian marine and terrestrial sequences.

Metal toxicity characterization factors for marine ecosystems: considering the importance of the estuary for freshwater emissions

DEFF Research Database (Denmark)

Dong, Yan; Rosenbaum, Ralph K.; Hauschild, Michael Zwicky

2017-01-01

The study develops site-dependent characterization factors (CFs) for marine ecotoxicity of metals emitted to freshwater, taking their passage of the estuary into account. To serve life cycle assessment (LCA) studies where emission location is often unknown, site-generic marine CFs were developed...... with an estuary removal process to calculate FF. BF and EF were taken from Dong et al. Environ Sci Technol 50:269–278 (2016). Site-generic marine CFs were derived from site-dependent marine CFs. Different averaging principles were tested, and the approach representing estuary discharge rate was identified...... between both methods. Accounting for estuary removal particularly influences marine ecotoxicity CFs for emission to freshwater of metals that have a strong tendency to complex-bind to particles. It indicates the importance of including estuary in the characterization modelling when dealing with those...

Development of DArT-based PCR markers for selecting drought-tolerant spring barley.

Science.gov (United States)

Fiust, Anna; Rapacz, Marcin; Wójcik-Jagła, Magdalena; Tyrka, Mirosław

2015-08-01

The tolerance of spring barley (Hordeum vulgare L.) cultivars to spring drought is an important agronomic trait affecting crop yield and quality in Poland. Therefore, breeders require new molecular markers to select plants with lower spring drought susceptibility. With the advent of genomic selection technology, simple molecular tools may still be applicable to screen material for markers of the most important traits and in-depth genome scanning. In previous studies, diversity arrays technology (DArT)-based genetic maps were constructed for F2 populations of Polish fodder and malt barley elite breeding lines, and 15 and 18 quantitative trait loci (QTLs) related to spring drought tolerance were identified, respectively. In this paper, we show the results of a conversion of 30 DArT markers corresponding to 11 QTLs into simple sequence repeat (SSR) and sequence tagged site (STS) markers. Twenty-two polymorphic markers were obtained, including 13 DArT-based SSRs. Additionally, 31 SSR markers, located in close proximity to the DArT markers, were selected from the GrainGenes database and tested. Further analyses of 24 advanced breeding lines with different drought tolerances confirmed that five out of the 30 converted markers, as well as three out of the 31 additional SSR markers, were effective in marker-assisted selection for drought tolerance. The possible function of clones related to these markers in drought tolerance is discussed.

The impact of industrial waste of Venezuelan marine water

Energy Technology Data Exchange (ETDEWEB)

Roberts, Frank [Bechtel Corp., Gaithersburg, MD (United States); Guarino, Carmen [Guarino Engineers, Philadelphia, PA (United States); Arias, Marlene [Ministerio del Ambiente y Recursos Naturales Renovables, Caracas (Venezuela)

1994-12-31

The Puerto Cabello-Marron coastal area of Venezuela is an ideal location for industries that require large land areas, water, marine transportation, minimum habitation, cooling water, etc. However, mercury spills have produced concern in the entire coastal zone. The area was investigated and negative impacts were identified. Consequently, recommendations for waste water management were proceeded. 13 refs., 6 figs., 3 tabs.

The impact of industrial waste of Venezuelan marine water

Energy Technology Data Exchange (ETDEWEB)

Roberts, Frank [Bechtel Corp., Gaithersburg, MD (United States); Guarino, Carmen [Guarino Engineers, Philadelphia, PA (United States); Arias, Marlene [Ministerio del Ambiente y Recursos Naturales Renovables, Caracas (Venezuela)

1993-12-31

The Puerto Cabello-Marron coastal area of Venezuela is an ideal location for industries that require large land areas, water, marine transportation, minimum habitation, cooling water, etc. However, mercury spills have produced concern in the entire coastal zone. The area was investigated and negative impacts were identified. Consequently, recommendations for waste water management were proceeded. 13 refs., 6 figs., 3 tabs.

New Waves in Marine Science Symposium: Marine Animal Communication.

Science.gov (United States)

Allen, Betty, Comp.

1989-01-01

Presented are the abstracts from three research projects on marine social systems which were a part of a marine science symposium. Five sets of activities on marine animal communication are included, one each for grades K-2, 3-5, 6-8 and 9-12, and informal education. (CW)

The influence of persistent organic pollutants in the traditional Inuit diet on markers of inflammation.

Science.gov (United States)

Schæbel, L K; Bonefeld-Jørgensen, E C; Vestergaard, H; Andersen, S

2017-01-01

Concentrations of persistent organic pollutants (POPs) are high in Inuit living predominately on the traditional marine diet. Adverse effects of POPs include disruption of the immune system and cardiovascular diseases that are frequent in Greenland Inuit. We aimed to assess the association between exposure to POPs from the marine diet and inflammation, taking into account other factors such as vitamin D. We invited Inuit and non-Inuit living in settlements or the town in rural East Greenland or in the capital city Nuuk. Participants completed a food frequency questionnaire and donated a blood sample for measurement of the two markers of inflammation YKL-40 and hsCRP, 25-hydroxy-vitamin D, eleven organochlorine pesticides (OCPs), fourteen polychlorinated biphenyls (PCBs), one polybrominated biphenyl, and nine polybrominated diphenyl ethers (PBDEs) adjusted to the serum lipid content. Participants were 50 through 69 years old, living in settlements, town or city (n = 151/173/211; 95% participation rate). ΣOCP, ΣPCB and ΣPBDE serum levels were higher in Inuit than in non-Inuit (pInuit compared to non-Inuit (pInuit diet and with markers of inflammation. This supports a pro-inflammatory role of POPs to promote chronic diseases common to populations in Greenland. These data inform guidelines on 'the Arctic dilemma' and encourage follow-up on the ageing Arctic populations.

Radiation Dose Assessment Model for Marine Biota (K-BIOTA-DYN-M)

Energy Technology Data Exchange (ETDEWEB)

Keum, Dong-Kwon; Kim, Byeong-Ho; Jun, In; Lim, Kwang-Muk; Choi, Yong-Ho [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2014-10-15

In this study, a dynamic compartment model based on the food chain of marine biota, which can be used with easily obtainable ecological parameters, is presented to predict the activity concentration and dose rate of marine biota as a result of a nuclear. The model was applied to investigate a long-term effect of the Fukushima accident on the marine biota by using {sup 131}I, {sup 134}Cs, and {sup 137}Cs activity concentrations of seawater measured for up to about 2.5years after the accident in the port of FDNPS, which was known to be the most severely contaminated. A dynamic compartment model was presented to assess the activity concentration and whole body dose rate of marine biota, and was tested through the prediction of the activity concentration and dose rate of the marine biota using the seawater activities of {sup 131}I, {sup 134}Cs, and {sup 137}Cs measured after the accident at two locations in the port of the Fukushima Daiichi Nuclear Power Station (FDNPS), as a result the Fukushima nuclear accident that occurred on March 11, 2011. The prediction results showed the radiological effect on the population of the marine biota as a consequence of the accident was insignificant. This result is also valid for biota in a less contaminated offshore because the present assessment was made for the most highly contaminated area such as marine ecosystem in the port of FDNPS. Conclusively, the present dynamic model can be usefully applied to estimate the activity concentration and whole body dose rate of the marine biota as the consequence of a nuclear accident.

Technologies for the marking of fishing gear to identify gear components entangled on marine animals and to reduce abandoned, lost or otherwise discarded fishing gear.

Science.gov (United States)

He, Pingguo; Suuronen, Petri

2018-04-01

Fishing gears are marked to establish and inform origin, ownership and position. More recently, fishing gears are marked to aid in capacity control, reduce marine litter due to abandoned, lost or otherwise discarded fishing gear (ALDFG) and assist in its recovery, and to combat illegal, unreported and unregulated (IUU) fishing. Traditionally, physical marking, inscription, writing, color, shape, and tags have been used for ownership and capacity purposes. Buoys, lights, flags, and radar reflectors are used for marking of position. More recently, electronic devices have been installed on marker buoys to enable easier relocation of the gear by owner vessels. This paper reviews gear marking technologies with focus on coded wire tags, radio frequency identification tags, Automatic Identification Systems, advanced electronic buoys for pelagic longlines and fish aggregating devices, and re-location technology if the gear becomes lost. Copyright © 2018 Elsevier Ltd. All rights reserved.

Marine Robot Autonomy

CERN Document Server

2013-01-01

Autonomy for Marine Robots provides a timely and insightful overview of intelligent autonomy in marine robots. A brief history of this emerging field is provided, along with a discussion of the challenges unique to the underwater environment and their impact on the level of intelligent autonomy required.  Topics covered at length examine advanced frameworks, path-planning, fault tolerance, machine learning, and cooperation as relevant to marine robots that need intelligent autonomy.  This book also: Discusses and offers solutions for the unique challenges presented by more complex missions and the dynamic underwater environment when operating autonomous marine robots Includes case studies that demonstrate intelligent autonomy in marine robots to perform underwater simultaneous localization and mapping  Autonomy for Marine Robots is an ideal book for researchers and engineers interested in the field of marine robots.      

Integration of acoustic and light sensors for marine bio-mining

Science.gov (United States)

Wiegand, Gordon

2016-05-01

Maximum diversity of life exists within the estuaries and coral reefs of the Globe. The absence of vertebrate and other land dwelling adaptations has resulted in an enormous range of complexity among invertebrates and their symbiotic biome resulting in the generation of compounds finding uses in anti-tumor and antibiotic applications. It has been widely reported that the greatest factor limiting progress in characterizing and processing new therapeutics derived from invertebrates is the lack of adequate original material. Symbiotic bacteria within specific tunicates often synthesize antitumor compounds as secondary metabolites. We describe a 3-stage protocol that utilizes acoustic and photonic analysis of large areas of marine ecosystem and life forms. We refer to this as Estuary Assessment System (EAS), which includes a multi-frequency acoustic transducer/sensing instrument mounted on our research vessel. This generates a topological map of surveyed tracks of marine locations known to be habitats of useful actinobacteria laden invertebrates. Photonic devices are used to generate image and pulse data leading to location, identification and isolation of tunicates and actinobacteria.

Long-lived radionuclides in the marine environment of Thailand

Energy Technology Data Exchange (ETDEWEB)

Mahapanyawong, S; Sonsuk, M; Polphong, P; Milintawisamai, M; Panyatipsakul, Y

1993-12-31

Natural and artificial radionuclides in the environment of the Gulf of Thailand were studied during 1989-1991. In the study, surface water, sediment at 5 locations between latitudes 9 degree 28 minute N and 13 degree 15 minute N longitudes 100 degree 35 minute E. and 5 species of marine biota were collected in 1989. In 1990 and 1991, 9 and 7 species of marine biota were collected from the Gulf of Thailand and the Andaman Sea respectively. These samples were prepared and analyzed for gamma-emitting radionuclides as well as some beta and alpha-emitting radionuclides such as C-14, Sr-90, Pu-239,240, Po-210 etc. The results indicate the present status of radioactivity level of the environment of the gulf and the sea

Long-lived radionuclides in the marine environment of Thailand

International Nuclear Information System (INIS)

Mahapanyawong, S.; Sonsuk, M.; Polphong, P.; Milintawisamai, M.; Panyatipsakul, Y.

1992-01-01

Natural and artificial radionuclides in the environment of the Gulf of Thailand were studied during 1989-1991. In the study, surface water, sediment at 5 locations between latitudes 9 degree 28 minute N and 13 degree 15 minute N longitudes 100 degree 35 minute E. and 5 species of marine biota were collected in 1989. In 1990 and 1991, 9 and 7 species of marine biota were collected from the Gulf of Thailand and the Andaman Sea respectively. These samples were prepared and analyzed for gamma-emitting radionuclides as well as some beta and alpha-emitting radionuclides such as C-14, Sr-90, Pu-239,240, Po-210 etc. The results indicate the present status of radioactivity level of the environment of the gulf and the sea

Long-lived radionuclides in the marine environment of Thailand

International Nuclear Information System (INIS)

Mahapanyawong, S.; Sonsuk, M.; Polphong, P.; Milintawisamai, M.; Panyatipsakul, Y.

1992-01-01

Natural and artificial radionuclides in the environment of the Gulf of Thailand were studied during 1989-1991. In the study, surface water, sediment at 5 locations between latitudes 9 0 28' N and 13 0 15' N longitudes 100 0 35' E. and 5 species of marine biota were collected in 1989. In 1990 and 1991, 9 and 7 species of marine biota were collected from the Gulf of Thailand and the Andaman Sea respectively. These samples were prepared and analyzed for gamma-emitting radionuclides as well as some beta and alpha-emitting radionuclides such as C 14 , Sr 90 , Pu 239,240 , Po 210 etc. The results indicate the present status of radioactivity level of the environment of the gulf and the sea

Boundary layer models for calving marine outlet glaciers

Directory of Open Access Journals (Sweden)

C. Schoof

2017-10-01

Full Text Available We consider the flow of marine-terminating outlet glaciers that are laterally confined in a channel of prescribed width. In that case, the drag exerted by the channel side walls on a floating ice shelf can reduce extensional stress at the grounding line. If ice flux through the grounding line increases with both ice thickness and extensional stress, then a longer shelf can reduce ice flux by decreasing extensional stress. Consequently, calving has an effect on flux through the grounding line by regulating the length of the shelf. In the absence of a shelf, it plays a similar role by controlling the above-flotation height of the calving cliff. Using two calving laws, one due to Nick et al. (2010 based on a model for crevasse propagation due to hydrofracture and the other simply asserting that calving occurs where the glacier ice becomes afloat, we pose and analyse a flowline model for a marine-terminating glacier by two methods: direct numerical solution and matched asymptotic expansions. The latter leads to a boundary layer formulation that predicts flux through the grounding line as a function of depth to bedrock, channel width, basal drag coefficient, and a calving parameter. By contrast with unbuttressed marine ice sheets, we find that flux can decrease with increasing depth to bedrock at the grounding line, reversing the usual stability criterion for steady grounding line location. Stable steady states can then have grounding lines located on retrograde slopes. We show how this anomalous behaviour relates to the strength of lateral versus basal drag on the grounded portion of the glacier and to the specifics of the calving law used.

Pathway of /sup 14/Co/sub 2/ fixation in marine algae

Energy Technology Data Exchange (ETDEWEB)

Joshi, G V; Karekar, M D [Shivaji Univ., Kolhapur (India). Dept. of Botany

1973-08-01

Marine plants have a different metabolic environment which is likely to affect pathways of CO/sub 2/ fixation. It has been observed that in marine alga, Ulva lactuca, during short term light fixation of /sup 14/CO/sub 2/, besides PGA, an appreciable amount of activity was located in aspartate. This curious observation can now be explained on the basis of Hatch, Slack and Kortschak pathway of CO/sub 2/ fixation. In order to trace pathways of /sup 14/CO/sub 2/ in marine algae, a wide variety of algal specimens were exposed to NaH/sup 14/CO/sub 3/ in light and the products were analyzed. The algae selected were Ulva lactuca, Sargassum ilicifolium, Sphacelaria sp., Padina tetrastromatica, Chaetomorpha media and Enteromorpha tubulosa. It has been found that the pathways of CO/sub 2/ in the above marine algae differ from the conventional pattern recorded in Chlorella. The early labelling of aspartate and its subsequent utilization indicates that HSK pathway is operative in the marine algae. Malate synthesis is inhibited due to the effect of saline environment on the activity of malic dehydrogenase. Appreciable label in PGA is suggestive of the fact that Calvin and Bassham pathway as well as the HSK route are simultaneously operating. (auth)

Marine habitat mapping at Labuan Marine Park, Federal Territory of Labuan, Malaysia

Science.gov (United States)

Mustajap, Fazliana; Saleh, Ejria; Madin, John; Hamid, Shahimah Abdul

2015-06-01

Marine habitat mapping has recently become essential in coastal marine science research. It is one of the efforts to understand marine ecosystems, and thus to protect them. Habitat mapping is integral to marine-related industries such as fisheries, aquaculture, forestry and tourism. An assessment of marine habitat mapping was conducted at Labuan Marine Park (LMP), a marine protected area in the Federal Territory of Labuan. It is surrounded by shallow water within its islands (Kuraman, Rusukan Kecil and Rusukan Besar) with an area of 39.7 km2. The objectives of the study are to identify the substrate and types of marine habitat present within the park. Side scan sonar (SSS) (Aquascan TM) was used to determine the substrates and habitat while ground truthings were done through field observation and SCUBA diving survey. Seabed classification and marine habitat was based on NOAA's biogeography program. Three substrate types (sand, rock, silt) were identified in this area. The major marine habitats identified are corals, macro algae and small patches of sea grass. The study area is an important refuge for spawning and juvenile fish and supports the livelihood of the coastal communities on Labuan Island. Therefore, proper management is crucial in order to better maintain the marine protected area. The findings are significant and provide detailed baseline information on marine habitat for conservation, protection and future management in LMP.

Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats.

Science.gov (United States)

Simon, Meinhard; Scheuner, Carmen; Meier-Kolthoff, Jan P; Brinkhoff, Thorsten; Wagner-Döbler, Irene; Ulbrich, Marcus; Klenk, Hans-Peter; Schomburg, Dietmar; Petersen, Jörn; Göker, Markus

2017-06-01

Marine Rhodobacteraceae (Alphaproteobacteria) are key players of biogeochemical cycling, comprise up to 30% of bacterial communities in pelagic environments and are often mutualists of eukaryotes. As 'Roseobacter clade', these 'roseobacters' are assumed to be monophyletic, but non-marine Rhodobacteraceae have not yet been included in phylogenomic analyses. Therefore, we analysed 106 genome sequences, particularly emphasizing gene sampling and its effect on phylogenetic stability, and investigated relationships between marine versus non-marine habitat, evolutionary origin and genomic adaptations. Our analyses, providing no unequivocal evidence for the monophyly of roseobacters, indicate several shifts between marine and non-marine habitats that occurred independently and were accompanied by characteristic changes in genomic content of orthologs, enzymes and metabolic pathways. Non-marine Rhodobacteraceae gained high-affinity transporters to cope with much lower sulphate concentrations and lost genes related to the reduced sodium chloride and organohalogen concentrations in their habitats. Marine Rhodobacteraceae gained genes required for fucoidan desulphonation and synthesis of the plant hormone indole 3-acetic acid and the compatible solutes ectoin and carnitin. However, neither plasmid composition, even though typical for the family, nor the degree of oligotrophy shows a systematic difference between marine and non-marine Rhodobacteraceae. We suggest the operational term 'Roseobacter group' for the marine Rhodobacteraceae strains.

Marine nitrogen cycle

Digital Repository Service at National Institute of Oceanography (India)

Naqvi, S.W.A.

) such as the Marine nitrogen cycle The marine nitrogen cycle. ‘X’ and ‘Y’ are intra-cellular intermediates that do not accumulate in water column. (Source: Codispoti et al., 2001) Page 1 of 3Marine nitrogen cycle - Encyclopedia of Earth 11/20/2006http://www... and nitrous oxide budgets: Moving targets as we enter the anthropocene?, Sci. Mar., 65, 85-105, 2001. Page 2 of 3Marine nitrogen cycle - Encyclopedia of Earth 11/20/2006http://www.eoearth.org/article/Marine_nitrogen_cycle square6 Gruber, N.: The dynamics...

Delivering research output to the user using ICT services: Marine contamination database web interface

International Nuclear Information System (INIS)

Abdul Muin Abdul Rahman; Abdul Khalik Wood; Zaleha Hashim; Burhanuddin Ahmad; Saaidi Ismail; Mohamad Safuan Sulaiman; Md Suhaimi Elias

2010-01-01

This project is about developing a web-based interface for accessing the Marine Contamination database records. The system contains of information pertaining to the occurrence of contaminants and natural elements in the marine eco-system based on samples taken at various locations within the shores of Malaysia in the form of sediment, seawater and marine biota. It represents a systematic approach for recording, storing and managing the vast amount of marine environmental data collected as output of the Marine Contamination and Transport Phenomena Research Project since 1990. The resultant collection of data is to form the background information (or baseline data) which could later be used to monitor the level of marine environmental pollutions around the country. Data collected from the various sampling and related laboratory activities are previously kept in conventional forms such as Excel worksheets and other documents, both in digital and/or paper form. With the help of modern database storage and retrieval techniques, the task of storage and retrieval of data has been made easier and manageable. It can also provide easy access to other parties who are interested in the data. (author)

Accuracy of Assignment of Atlantic Salmon (Salmo salar L.) to Rivers and Regions in Scotland and Northeast England Based on Single Nucleotide Polymorphism (SNP) Markers

Science.gov (United States)

Gilbey, John; Cauwelier, Eef; Coulson, Mark W.; Stradmeyer, Lee; Sampayo, James N.; Armstrong, Anja; Verspoor, Eric; Corrigan, Laura; Shelley, Jonathan; Middlemas, Stuart

2016-01-01

Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. PMID:27723810

Vic-Maui Race Observed Marine Debris Map Service, Pacific Ocean, 2012, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — Location and descriptions of marine debris observed by the Sailing Vessel (S/V) Family Affair yacht during the Victoria, British Columbia to Maui, Hawaii Yacht Race...

‘Cuteifying’ spaces and staging marine animals for Chinese middle-class consumption

NARCIS (Netherlands)

Ong, Chin Ee

2017-01-01

In this paper, Chimelong Ocean Kingdom in Zhuhai is considered an aestheticised space for the growing Chinese middle class. Located within the booming and fast-urbanising Pearl River Delta, the theme park is a sizeable project consisting of rides, marine mammal enclosures and a well-equipped

Lod scores for gene mapping in the presence of marker map uncertainty.

Science.gov (United States)

Stringham, H M; Boehnke, M

2001-07-01

Multipoint lod scores are typically calculated for a grid of locus positions, moving the putative disease locus across a fixed map of genetic markers. Changing the order of a set of markers and/or the distances between the markers can make a substantial difference in the resulting lod score curve and the location and height of its maximum. The typical approach of using the best maximum likelihood marker map is not easily justified if other marker orders are nearly as likely and give substantially different lod score curves. To deal with this problem, we propose three weighted multipoint lod score statistics that make use of information from all plausible marker orders. In each of these statistics, the information conditional on a particular marker order is included in a weighted sum, with weight equal to the posterior probability of that order. We evaluate the type 1 error rate and power of these three statistics on the basis of results from simulated data, and compare these results to those obtained using the best maximum likelihood map and the map with the true marker order. We find that the lod score based on a weighted sum of maximum likelihoods improves on using only the best maximum likelihood map, having a type 1 error rate and power closest to that of using the true marker order in the simulation scenarios we considered. Copyright 2001 Wiley-Liss, Inc.

Marine tourism and the locations of protected turtles on Sukamade Beach, Meru Betiri National Park, East Java

Science.gov (United States)

Prihadi, D. J.; Shofiyullah, A.; Dhahiyat, Y.

2018-04-01

The research was conducted in Sukamade Beach, Meru Betiri National Park, East Java. The purpose of this research was to identify marine tourism activity and to determine the differences in the characteristics of turtle-nesting beaches towards the number and species of turtles that came to the beach. Data collection conducted in August-September 2014. The method used in this research was a survey method at 7 reseach stations to collect primary data (biophysical characteristics) and secondary data. The Primary data was collected by monitoring turtles, width and slope of the beach, temperature, pH, moisture, sand texture, and beach vegetation conditions at each station. The results of the research shows that marine tourisms always involve tourists who attend to see turtle nesting, when turtles arrive at the beach, and turtles return to the sea, how large the turtles and how they lay eggs on the beach, and the release of little turtles (tukik). The number of turtles that landed from station 1 to station 7 is as many as 311 individuals of three species. The most dominant species of turtles that arrived at the beach is green turtle (Chelonia mydas), followed by olive ridley turtles (Lepidochelys olivaceae) and leatherbacks turtles (Dermochelys coriacea).

Biogeography of photosynthetic light-harvesting genes in marine phytoplankton.

Directory of Open Access Journals (Sweden)

Thomas S Bibby

Full Text Available BACKGROUND: Photosynthetic light-harvesting proteins are the mechanism by which energy enters the marine ecosystem. The dominant prokaryotic photoautotrophs are the cyanobacterial genera Prochlorococcus and Synechococcus that are defined by two distinct light-harvesting systems, chlorophyll-bound protein complexes or phycobilin-bound protein complexes, respectively. Here, we use the Global Ocean Sampling (GOS Project as a unique and powerful tool to analyze the environmental diversity of photosynthetic light-harvesting genes in relation to available metadata including geographical location and physical and chemical environmental parameters. METHODS: All light-harvesting gene fragments and their metadata were obtained from the GOS database, aligned using ClustalX and classified phylogenetically. Each sequence has a name indicative of its geographic location; subsequent biogeographical analysis was performed by correlating light-harvesting gene budgets for each GOS station with surface chlorophyll concentration. CONCLUSION/SIGNIFICANCE: Using the GOS data, we have mapped the biogeography of light-harvesting genes in marine cyanobacteria on ocean-basin scales and show that an environmental gradient exists in which chlorophyll concentration is correlated to diversity of light-harvesting systems. Three functionally distinct types of light-harvesting genes are defined: (1 the phycobilisome (PBS genes of Synechococcus; (2 the pcb genes of Prochlorococcus; and (3 the iron-stress-induced (isiA genes present in some marine Synechococcus. At low chlorophyll concentrations, where nutrients are limited, the Pcb-type light-harvesting system shows greater genetic diversity; whereas at high chlorophyll concentrations, where nutrients are abundant, the PBS-type light-harvesting system shows higher genetic diversity. We interpret this as an environmental selection of specific photosynthetic strategy. Importantly, the unique light-harvesting system isiA is found

Directing spatial attention to locations within remembered and imagined mental representations

Directory of Open Access Journals (Sweden)

Simon G Gosling

2013-04-01

Full Text Available Spatial attention enables us to enhance the processing of items at target locations, at the expense of items presented at irrelevant locations. Many studies have explored the neural correlates of these spatial biases using event-related potentials. More recently some studies have shown that these ERP correlates are also present when subjects search visual short-term memory. This suggests firstly that this type of mental representation retains a spatial organisation that is based upon that of the original percept, and secondly that these attentional biases are flexible and can act to modulate remembered as well as perceptual representations. We aimed to test whether it was necessary for subjects to have actually seen the memoranda at those spatial locations, or whether simply imagining the spatial layout was sufficient to elicit the spatial attention effects. On some trials subjects performed a ‘visual’ search of an array held in visual short-term memory, and upon other trials subjects imagined the items at those spatial locations. We found ERP markers of spatial attention in both the memory-search and the imagery-search conditions. However, there were differences between the conditions, the effect in the memory-search began earlier and included posterior electrode sites. By contrast the ERP effect in the imagery-search condition was apparent only over fronto-central electrode sites and emerged slightly later. Nonetheless, our data demonstrate that it is not necessary for subjects to have ever seen the items at spatial locations for neural markers of spatial attention to be elicited; searching an imaginary spatial layout also triggers spatially-specific attention effects in the ERP data.

Effect of automatic exposure control marker with chest radiography in radiation reduction

International Nuclear Information System (INIS)

Jung, Ji Sang; Choi, Byoung Wook; Shim, Ji Na; Ahn, Ho Sik; Jin, Duk Eun; Liml, Jae Sik; Kang, Sung Ho; Kim, Sung Ho; Kim, Young Mo

2014-01-01

This study focused on effects of patient exposure dose reduction with AEC (Auto Exposure Control) marker that is designed for showing location of AEC in X-ray Chest radiography. It included 880 adults who have to use Chest X-ray Digital Radiography system (DRS, LISTEM, Korea). AEC (Ion chambers are posited in top of both sides) are used to every adult and set X-ray system as Field size 17 x 17 inch, 120 kVp, FFD 180 cm. 440 people of control group are posited on detector to include both sides of lung field and the other 440 people of experimental group are set to contact their lung directly to Ion chamber (making marker to shows location). Then, measured every DAP and, estimated patient effective dose by using PCXMC 2.0. The average age of control group (M:F=245:195) is 53.9 and the average BMI is 23.4. BMI ranges from under weight: 35, normal range: 279, over weight: 106 to obese: 20 and average DAP is 223.56 mGycm2, Mean effective dose is 0.045 mSv. The average age of experimental group (M:F=197:243) is 53.7 and the average BMI is 22.7. BMI ranges from under weight: 34, normal range: 315, over weight: 85 to obese: 6 and average DAP is 207.36 mGycm2, Mean effective dose is 0.041 mSv. Experimental group shows less Mean effective dose as 0.004mSv (9.7%) than control group. Also, patient numbers who got over exposure more than 0.056 mSv (limit point to know efficiency of AEC marker) is 65 in control group(14.7%), 19 in experimental group (4.3%) and take statistics with t-Test. The statistical difference between two groups is 0.006. In order to use proper amount of X-ray in auto exposure controlled chest X-ray system, matching location between ion chamber and body part is needed, and using AEC marker (designed for showing location of ion chamber) is a way to reduce unnecessary patient exposure dose

Effect of automatic exposure control marker with chest radiography in radiation reduction

Energy Technology Data Exchange (ETDEWEB)

Jung, Ji Sang; Choi, Byoung Wook; Shim, Ji Na; Ahn, Ho Sik; Jin, Duk Eun; Liml, Jae Sik; Kang, Sung Ho [Severance Hospital, Yonsei University College of Medicine, Seoul (Korea, Republic of); Kim, Sung Ho [LISTEM, Woonju (Korea, Republic of); Kim, Young Mo [Dept. of Biomedical Engineering, Konyang University, Nonsan (Korea, Republic of)

2014-09-15

This study focused on effects of patient exposure dose reduction with AEC (Auto Exposure Control) marker that is designed for showing location of AEC in X-ray Chest radiography. It included 880 adults who have to use Chest X-ray Digital Radiography system (DRS, LISTEM, Korea). AEC (Ion chambers are posited in top of both sides) are used to every adult and set X-ray system as Field size 17 x 17 inch, 120 kVp, FFD 180 cm. 440 people of control group are posited on detector to include both sides of lung field and the other 440 people of experimental group are set to contact their lung directly to Ion chamber (making marker to shows location). Then, measured every DAP and, estimated patient effective dose by using PCXMC 2.0. The average age of control group (M:F=245:195) is 53.9 and the average BMI is 23.4. BMI ranges from under weight: 35, normal range: 279, over weight: 106 to obese: 20 and average DAP is 223.56 mGycm2, Mean effective dose is 0.045 mSv. The average age of experimental group (M:F=197:243) is 53.7 and the average BMI is 22.7. BMI ranges from under weight: 34, normal range: 315, over weight: 85 to obese: 6 and average DAP is 207.36 mGycm2, Mean effective dose is 0.041 mSv. Experimental group shows less Mean effective dose as 0.004mSv (9.7%) than control group. Also, patient numbers who got over exposure more than 0.056 mSv (limit point to know efficiency of AEC marker) is 65 in control group(14.7%), 19 in experimental group (4.3%) and take statistics with t-Test. The statistical difference between two groups is 0.006. In order to use proper amount of X-ray in auto exposure controlled chest X-ray system, matching location between ion chamber and body part is needed, and using AEC marker (designed for showing location of ion chamber) is a way to reduce unnecessary patient exposure dose.

Long-lived radionuclides in the marine environment of Thailand

Energy Technology Data Exchange (ETDEWEB)

Mahapanyawong, S; Sonsuk, M; Polphong, P; Milintawisamai, M; Panyatipsakul, Y

1993-12-31

Natural and artificial radionuclides in the environment of the Gulf of Thailand were studied during 1989-1991. In the study, surface water, sediment at 5 locations between latitudes 9{sup 0} 28` N and 13{sup 0} 15` N longitudes 100{sup 0} 35` E. and 5 species of marine biota were collected in 1989. In 1990 and 1991, 9 and 7 species of marine biota were collected from the Gulf of Thailand and the Andaman Sea respectively. These samples were prepared and analyzed for gamma-emitting radionuclides as well as some beta and alpha-emitting radionuclides such as C{sup 14}, Sr{sup 90}, Pu{sup 239,240}, Po{sup 210} etc. The results indicate the present status of radioactivity level of the environment of the gulf and the sea.

Marine Environmental History

DEFF Research Database (Denmark)

Poulsen, Bo

2012-01-01

human society and natural marine resources. Within this broad topic, several trends and objectives are discernable. The essay argue that the so-called material marine environmental history has its main focus on trying to reconstruct the presence, development and environmental impact of past fisheries......This essay provides an overview of recent trends in the historiography of marine environmental history, a sub-field of environmental history which has grown tremendously in scope and size over the last c. 15 years. The object of marine environmental history is the changing relationship between...... and whaling operations. This ambition often entails a reconstruction also of how marine life has changed over time. The time frame rages from Paleolithicum to the present era. The field of marine environmental history also includes a more culturally oriented environmental history, which mainly has come...

The Cretaceous-Tertiary boundary marine extinction and global primary productivity collapse

Science.gov (United States)

Zachos, J. C.; Arthus, M. A.; Dean, W. E.

1988-01-01

The extinction of marine phyto-and zoo-plankton across the K-T boundary has been well documented. Such an event may have resulted in decreased photosynthetic fixation of carbon in surface waters and a collapse of the food chain in the marine biosphere. Because the vertical and horizontal distribution of the carbon isotopic composition of total dissolved carton (TDC) in the modern ocean is controlled by the transfer of organic carbon from the surface to deep reservoirs, it follows that a major disruption of the marine biosphere would have had a major effect on the distribution of carbon isotopes in the ocean. Negative carbon isotope excursions have been identified at many marine K-T boundary sequences worldwide and are interpreted as a signal of decreased oceanic primary productivity. However, the magnitude, duration and consequences of this productivity crisis have been poorly constrained. On the basis of planktonic and benthic calcareous microfossil carbon isotope and other geochemical data from DSDP Site 577 located on the Shatsky Rise in the north-central Pacific, as well as other sites, researchers have been able to provide a reasonable estimate of the duration and magnitude of this event.

Control of toxic marine dinoflagellate blooms by serial parasitic killers.

Science.gov (United States)

Chambouvet, Aurelie; Morin, Pascal; Marie, Dominique; Guillou, Laure

2008-11-21

The marine dinoflagellates commonly responsible for toxic red tides are parasitized by other dinoflagellate species. Using culture-independent environmental ribosomal RNA sequences and fluorescence markers, we identified host-specific infections among several species. Each parasitoid produces 60 to 400 offspring, leading to extraordinarily rapid control of the host's population. During 3 consecutive years of observation in a natural estuary, all dinoflagellates observed were chronically infected, and a given host species was infected by a single genetically distinct parasite year after year. Our observations in natural ecosystems suggest that although bloom-forming dinoflagellates may escape control by grazing organisms, they eventually succumb to parasite attack.

Influence of fishing activity over the marine debris composition close to coastal jetty.

Science.gov (United States)

Farias, Eduardo G G; Preichardt, Paulo R; Dantas, David V

2018-04-23

Worldwide, the marine debris emissions have been provoking impacts in ecosystems, generating massive mortality of different species with commercial interest. In South America, we have a lack of studies to verify the marine debris composition in transitional environments such as adjacent regions of coastal jetties. These are hydraulic engineering constructions used to maintain the navigation channel access between the sea-estuarine interface and are also used by teleost fishes, crustaceans, and mollusks like artificial shelters (reefs), being excellent fishing grounds. Therefore, the present study was devoted to qualitatively evaluate the composition of marine debris in an internal jetty portion of a Laguna Estuarine System (LES) located in South America (Brazil). Six hundred freediving were conducted to collect marine debris in the study region. The in situ campaigns were performed in 2016 during all spring season (sand substrata) in four distinct zones with 26,400 m 2 each one covering almost all adjacent jetty extension, to evaluate possible spatial changes in the marine debris composition. All material obtained was identified, measured, weighed, and ordered in eight groups, with six groups being related to the fishing activity and two groups related to the tourism/community in the study region. So, it was possible to observe possible relations between the marine debris distribution to artisanal and recreational local fishing. After 600 freediving sampling efforts, 2142 marine debris items were obtained, totaling close to 100 kg of solid waste removed from the inner portion of the coastal jetty. Notably, 1752 units (50 kg) of fishing leads were collected being this item the main marine debris residue found in the four sampled areas, corresponding to nearly 50% of the total weight of the collected waste. Ninety-eight percent of marine debris were derived from the local fishing activities, and just 2% were derived from tourism/community. Considering the total

Effects of Pollution on Marine Organisms.

Science.gov (United States)

Mearns, Alan J; Reish, Donald J; Oshida, Philip S; Morrison, Ann Michelle; Rempel-Hester, Mary Ann; Arthur, Courtney; Rutherford, Nicolle; Pryor, Rachel

2017-10-01

This review covers selected 2016 articles on the biological effects of pollutants and human physical disturbances on marine and estuarine plants, animals, ecosystems and habitats. The review, based largely on journal articles, covers field and laboratory measurement activities (bioaccumulation of contaminants, field assessment surveys, toxicity testing and biomarkers) as well as pollution issues of current interest including endocrine disrupters, emerging contaminants, wastewater discharges, dredging and disposal etc. Special emphasis is placed on effects of oil spills and marine debris due largely to the 2010 Deepwater Horizon oil blowout in the Gulf of Mexico. Several topical areas reviewed in the past (ballast water and ocean acidification) were dropped this year. The focus of this review is on effects, not pollutant fate and transport. There is considerable overlap across subject areas (e.g.some bioaccumulation papers may be cited in other topical categories). Please use keyword searching of the text to locate related but distributed papers. Use this review only as a guide and please consult the original papers before citing them.

A summary of global {sup 129}I in marine waters

Energy Technology Data Exchange (ETDEWEB)

He Peng, E-mail: peng.he@geo.uu.se [Dept. of Earth Sciences, Uppsala University, Villav. 16, 752 36 Uppsala (Sweden); Aldahan, A. [Dept. of Earth Sciences, Uppsala University, Villav. 16, 752 36 Uppsala (Sweden); Dept. of Geology, United Arab Emirates University, P.O. Box 17551, Al Ain (United Arab Emirates); Possnert, G. [Tandem Laboratory, Uppsala University, P.O. Box 529, 751 20 Uppsala (Sweden); Hou, X.L. [Riso National Laboratory for Sustainable Energy, NUK-202, Technical University of Denmark, DK-4000 Roskilde (Denmark)

2013-01-15

Despite the many investigations concerning the occurrence of anthropogenic iodine-129 in the atmosphere, terrestrial and marine environments, there is a lack of a comprehensive collection of data on the distribution of the isotope in marine waters. The temporal and spatial variability of anthropogenic {sup 129}I is strongly linked to the major point sources in the Irish Sea and the English Channel and the global marine spreading pathways are partly outlined from these sources. The temporal evolution is still, however, not well defined when transport and dissipation are considered in the different oceans and ocean compartments. We here summarize available published literature data on {sup 129}I temporal and spatial distribution in the global marine water. The results show presence of numerous data sets for the North Atlantic and Arctic Oceans where strong variability in terms of water depth, time and location also occur. Scarcity of data on {sup 129}I from the Pacific, Indian and South Atlantic Oceans demonstrates gaps in the coverage of the isotope spatial extent. These shortcomings in the spatial coverage may relate to the understanding that the anthropogenic {sup 129}I signal will take a long time to be transported, if at all, from the North Atlantic into other oceans. Data from recent expeditions in the Southern oceans and the Geotraces ocean profiling will reveal additional information about {sup 129}I distribution in the marine waters.

Life in the "plastisphere": microbial communities on plastic marine debris.

Science.gov (United States)

Zettler, Erik R; Mincer, Tracy J; Amaral-Zettler, Linda A

2013-07-02

Plastics are the most abundant form of marine debris, with global production rising and documented impacts in some marine environments, but the influence of plastic on open ocean ecosystems is poorly understood, particularly for microbial communities. Plastic marine debris (PMD) collected at multiple locations in the North Atlantic was analyzed with scanning electron microscopy (SEM) and next-generation sequencing to characterize the attached microbial communities. We unveiled a diverse microbial community of heterotrophs, autotrophs, predators, and symbionts, a community we refer to as the "Plastisphere". Pits visualized in the PMD surface conformed to bacterial shapes suggesting active hydrolysis of the hydrocarbon polymer. Small-subunit rRNA gene surveys identified several hydrocarbon-degrading bacteria, supporting the possibility that microbes play a role in degrading PMD. Some Plastisphere members may be opportunistic pathogens (the authors, unpublished data) such as specific members of the genus Vibrio that dominated one of our plastic samples. Plastisphere communities are distinct from surrounding surface water, implying that plastic serves as a novel ecological habitat in the open ocean. Plastic has a longer half-life than most natural floating marine substrates, and a hydrophobic surface that promotes microbial colonization and biofilm formation, differing from autochthonous substrates in the upper layers of the ocean.

La Spezia and the research network for outreach and education in marine sciences.

Science.gov (United States)

Locritani, Marina; Furia, Stefania; Giacomazzi, Fabio; Merlino, Silvia; Mori, Anna; Nacini, Francesca; Nardi, Elisabetta; Stroobant, Mascha; Talamoni, Roberta; Zocco, Olivia

2013-04-01

La Spezia is a small town located in the southeastern corner of the Liguria Region (Italy). The close relationship with the sea conditioned the ancient and recent activities of the town that embraces the namesake gulf. The Gulf of La Spezia overlooks on the Liguria Sea which is characterized by a high biodiversity, due to the heritage of coastal habitats, where numerous interesting species to preserve live, often a priority for the EC Directives. Therefore, along the Liguria arc, five coastal Marine Protected Areas have been instituted, two of them insist in La Spezia Province: the Marine Protected Areas of Cinque Terre National Park and Porto Venere Regional Park, both included in the UNESCO World Heritage Site. Moreover, the importance of the cetacean communities in the Ligurian Sea led to the establishment of the Cetacean Sanctuary. Resulting from a positive geographic coincidence, six Research Institutions are located in La Spezia: CMRE-NATO (Centre for Maritime Research and Experimentation, formerly NURC-NATO Undersea Research Centre), CNR (National Research Council), CSSN (Naval Experimentation and Support Centre - Navy), ENEA (Italian National Agency for New Technologies, Energy and Sustainable Economic Development), INGV (National Institute of Geophysics and Volcanology), Polo Universitario Marconi (University of Genoa - seat of La Spezia). These Institutions share a long time experience of work at sea and in coastal environments according to their different scientific interests (biology, engineering, geology, physic, and oceanography). Moreover, in 2009 the Liguria Region promoted the institution of the Liguria Cluster of Marine Technologies (Distretto Ligure delle Tecnologie Marine), whose core target is the regional development of marine technologies and science. This unique concentration of Research Institutes, Marine Protected Areas and sea activities (civil and military) brought to implement a collaborative network among the scientific and territorial

Lost at sea: ocean acidification undermines larval fish orientation via altered hearing and marine soundscape modification

OpenAIRE

Rossi, Tullio; Nagelkerken, Ivan; Pistevos, Jennifer C. A.; Connell, Sean D.

2016-01-01

The dispersal of larvae and their settlement to suitable habitat is fundamental to the replenishment of marine populations and the communities in which they live. Sound plays an important role in this process because for larvae of various species, it acts as an orientational cue towards suitable settlement habitat. Because marine sounds are largely of biological origin, they not only carry information about the location of potential habitat, but also information about the quality of habitat. ...

Characterization of a canine tetranucleotide microsatellite marker located in the first intron of the tumor necrosis factor alpha gene.

Science.gov (United States)

Watanabe, Masashi; Tanaka, Kazuaki; Takizawa, Tatsuya; Segawa, Kazuhito; Neo, Sakurako; Tsuchiya, Ryo; Murata, Michiko; Murakami, Masaru; Hisasue, Masaharu

2014-01-01

A polymorphic tetranucleotide (GAAT)n microsatellite in the first intron of the canine tumor necrosis factor alpha (TNFA) gene was characterized in this study; 139 dogs were analyzed: 22 Beagles, 26 Chihuahuas, 20 Miniature Dachshunds, 24 Miniature Poodles, 22 Pembroke Welsh Corgis and 25 Shiba Inus. We detected the presence of the 4 alleles (GAAT)5, (GAAT)6, (GAAT)7 and (GAAT)8, including 9 of the 10 expected genotypes. The expected heterozygosity (He) and the polymorphic information content (PIC) value of this microsatellite locus varied from 0.389 to 0.749 and from 0.333 to 0.682, respectively, among the 6 breeds. The allelic frequency differed greatly among breeds, but this microsatellite marker was highly polymorphic and could be a useful marker for the canine TNFA gene.

Extremophiles in an Antarctic Marine Ecosystem

Directory of Open Access Journals (Sweden)

Iain Dickinson

2016-01-01

Full Text Available Recent attempts to explore marine microbial diversity and the global marine microbiome have indicated a large proportion of previously unknown diversity. However, sequencing alone does not tell the whole story, as it relies heavily upon information that is already contained within sequence databases. In addition, microorganisms have been shown to present small-to-large scale biogeographical patterns worldwide, potentially making regional combinations of selection pressures unique. Here, we focus on the extremophile community in the boundary region located between the Polar Front and the Southern Antarctic Circumpolar Current in the Southern Ocean, to explore the potential of metagenomic approaches as a tool for bioprospecting in the search for novel functional activity based on targeted sampling efforts. We assessed the microbial composition and diversity from a region north of the current limit for winter sea ice, north of the Southern Antarctic Circumpolar Front (SACCF but south of the Polar Front. Although, most of the more frequently encountered sequences  were derived from common marine microorganisms, within these dominant groups, we found a proportion of genes related to secondary metabolism of potential interest in bioprospecting. Extremophiles were rare by comparison but belonged to a range of genera. Hence, they represented interesting targets from which to identify rare or novel functions. Ultimately, future shifts in environmental conditions favoring more cosmopolitan groups could have an unpredictable effect on microbial diversity and function in the Southern Ocean, perhaps excluding the rarer extremophiles.

Cosmetic Potential of Marine Fish Skin Collagen

Directory of Open Access Journals (Sweden)

Ana L. Alves

2017-10-01

Full Text Available Many cosmetic formulations have collagen as a major component because of its significant benefits as a natural humectant and moisturizer. This industry is constantly looking for innovative, sustainable, and truly efficacious products, so marine collagen based formulations are arising as promising alternatives. A solid description and characterization of this protein is fundamental to guarantee the highest quality of each batch. In the present study, we present an extensive characterization of marine-derived collagen extracted from salmon and codfish skins, targeting its inclusion as component in cosmetic formulations. Chemical and physical characterizations were performed using several techniques such as sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE, Fourier Transformation Infrared (FTIR spectroscopy rheology, circular dichroism, X-ray diffraction, humidity uptake, and a biological assessment of the extracts regarding their irritant potential. The results showed an isolation of type I collagen with high purity but with some structural and chemical differences between sources. Collagen demonstrated a good capacity to retain water, thus being suitable for dermal applications as a moisturizer. A topical exposure of collagen in a human reconstructed dermis, as well as the analysis of molecular markers for irritation and inflammation, exhibited no irritant potential. Thus, the isolation of collagen from fish skins for inclusion in dermocosmetic applications may constitute a sustainable and low-cost platform for the biotechnological valorization of fish by-products.

Pathways and Distribution of Marine Debris Around a Remote Caribbean Island, Little Cayman

Science.gov (United States)

Camp, L.; Marsh, L.; O'Keefe, A.; Duran, J.; Wilcox, S. M.; James, R.; Cowan, E.

2011-12-01

Marine Debris is a major environmental concern that affects all levels of marine life. On remote beaches in the Caribbean, where human populations are minimal, marine debris is largely deposited by ocean currents. The ocean is estimated to be littered with over 6 million metric tons of trash per year with 90% coming from land sources, but little is known about the exact sources and pathways for the debris. In 2006, on Little Cayman Island, coastal debris was collected at two coastal areas where removal of debris had not occurred in at least 9 years and along 2000 meters squared. One site was located on the north side, while the other site was located on the south side of the island. Both sites were located in reef-protected coastal zones. These two sites were revisited in 2007, 2010, and 2011 to determine the volume, weight, and type of debris arriving annually and to assess the importance of different coastal processes in deposition. In 2011, eight turtle nesting beaches were added to the study and a total of 11,186 liters of debris was collected from 1600 meters of coastline. The island lies in a northeast southwest orientation. The south-side of the island is influenced largely by prevailing trade winds, currents and tropical storms, traveling across the Caribbean from the east. Currents, eddies, and Norwesters would presumably deposit debris on the north side of the island. Approximately five times the amount of debris is deposited on the south side of the island than on the north side of the island. From the total debris collected, 72.45% was plastic, 8.23% shoes, 6.37% ropes & nets , 5.13% glass, 4.37% styrofoam, and 3.44% contained other debris. The marine debris originated in 8 different countries, and it is estimated that there is collectively 223,721 liters (11,635 kg) covering the shores of the entire island. Remarkably, debris found on Little Cayman in 2011 was traced to the 2010 Haitian earthquake relief effort.

Genetic connectivity and self-replenishment of inshore and offshore populations of the endemic anemonefish, Amphiprion latezonatus

KAUST Repository

Steinberg, Rosemary

2016-02-19

Globally, marine species are under increasing pressure from human activities, including ocean warming, acidification, pollution, and overfishing. Species most vulnerable to these pressures tend to be ecological specialists that have low abundance and small distribution ranges (endemics). Marine endemics often exist as meta-populations distributed among few isolated locations. Determining genetic connectivity among these locations is essential to understanding the recovery potential of endemics after local extinction events. This study examined connectivity in the endemic anemonefish, Amphiprion latezonatus, a habitat specialist with low abundance at most locations. Evolutionary and contemporary migration, genetic diversity, and self-replenishment among the four main locations (Sunshine Coast, North Solitary Island, Lord Howe Island, and Norfolk Island) that comprise the entire A. latezonatus geographic range were assessed using mtDNA and microsatellite markers. Though historical gene flow inferred from mtDNA appeared high, population genetic differentiation was evident and contemporary gene flow inferred from microsatellites was limited, alongside very high (≥89 %) self-replenishment at all locations. Together, these data suggest prolonged recovery times following severe population decline (or extirpation) and indicate a need to protect this species at all locations, particularly Norfolk Island and Sunshine Coast where marine protected areas are lacking.

Trends in the development of unmanned marine technology

Directory of Open Access Journals (Sweden)

Olejnik Adam

2016-06-01

Full Text Available The article constitutes an attempt to identify current tendencies regarding the development of unmanned marine technologies such as unmanned surface and underwater vehicles. The analyses were performed on the basis of available literature, databases on research projects and internet sources. The material has been divided with regard to the location the research was conducted, the following groups being identified: the European Union, the United States of America and Poland. On the basis of the review of objectives and final effects of projects, tendencies in the development of the discussed marine technology have been identified. An interesting result of the review consists in an observation that Polish R&D works in this area are placed within the main identified developmental trends. Unfortunately, their effects are incomparable due to the minuteness of national funds allocated to R&D as opposed to other countries.

Marine low cloud sensitivity to an idealized climate change : The CGILS LES intercomparison

NARCIS (Netherlands)

Blossey, P.N.; Bretherton, C.S.; Zhang, M.; Cheng, A.; Endo, S.; Heus, T.; Liu, Y.; Lock, A.P.; De Roode, S.R.; Xu, K.M.

2013-01-01

Subtropical marine low cloud sensitivity to an idealized climate change is compared in six large-eddy simulation (LES) models as part of CGILS. July cloud cover is simulated at three locations over the subtropical northeast Pacific Ocean, which are typified by cold sea surface temperatures (SSTs)

A storage-protein marker associated with the suppressor of Pm8 for powdery mildew resistance in wheat.

Science.gov (United States)

Ren, S X; McIntosh, R A; Sharp, P J; The, T T

1996-11-01

A suppressor of resistance to powdery mildew conferred by Pm8 showed complete association with the presence of a storage-protein marker resolved by electrophoresis on SDS-PAGE gels. This marker was identified as the product of the gliadin allele Gli-A1a. The mildewresponse phenotypes of wheats possessing the 1BL.1RS translocation were completely predictable from electrophoretograms. The suppressor, designated SuPm8, was located on chromosome 1AS. It was specific in its suppression of Pm8, and did not affect the rye-derived resistance phenotypes of wheat lines with Pm17, also located in 1RS, or of lines with Pm7.

Spatial Patterns of Inshore Marine Soundscapes.

Science.gov (United States)

McWilliam, Jamie

2016-01-01

Passive acoustic monitoring was employed to investigate spatial patterns of soundscapes within a marine reserve. High energy level broadband snaps dominated nearly all habitat soundscapes. Snaps, the principal acoustic feature of soundscapes, were primarily responsible for the observed spatial patterns, and soundscapes appeared to retain a level of compositional and configurational stability. In the presence of high-level broadband snaps, soundscape composition was more influenced by geographic location than habitat type. Future research should focus on investigating the spatial patterns of soundscapes across a wider range of coastal and offshore seascapes containing a variety of distinct ecosystems and habitats.

TH-CD-207A-09: Stay On Target: Dynamic, Patient-Specific Templates of Fiducial Marker Clusters for IGRT

International Nuclear Information System (INIS)

Campbell, W; Miften, M; Jones, B

2016-01-01

Purpose: Pancreatic SBRT relies on extremely accurate delivery of ablative radiation doses to the target, and intra-fractional tracking of fiducial markers can facilitate improvements in dose delivery. However, this requires algorithms that are able to find fiducial markers with high speed and accuracy. The purpose of this study was to develop a novel marker tracking algorithm that is robust against many of the common errors seen with traditional template matching techniques. Methods: Using CBCT projection images, a method was developed to create detailed template images of fiducial marker clusters without prior knowledge of the number of markers, their positions, or their orientations. Briefly, the method (i) enhances markers in projection images, (ii) stabilizes the cluster’s position, (iii) reconstructs the cluster in 3D, and (iv) precomputes a set of static template images dependent on gantry angle. Furthermore, breathing data were used to produce 4D reconstructions of clusters, yielding dynamic template images dependent on gantry angle and breathing amplitude. To test these two approaches, static and dynamic templates were used to track the motion of marker clusters in more than 66,000 projection images from 75 CBCT scans of 15 pancreatic SBRT patients. Results: For both static and dynamic templates, the new technique was able to locate marker clusters present in projection images 100% of the time. The algorithm was also able to correctly locate markers in several instances where only some of the markers were visible due to insufficient field-of-view. In cases where clusters exhibited deformation and/or rotation during breathing, dynamic templates resulted in cross-correlation scores up to 70% higher than static templates. Conclusion: Patient-specific templates provided complete tracking of fiducial marker clusters in CBCT scans, and dynamic templates helped to provide higher cross-correlation scores for deforming/rotating clusters. This novel algorithm

TH-CD-207A-09: Stay On Target: Dynamic, Patient-Specific Templates of Fiducial Marker Clusters for IGRT

Energy Technology Data Exchange (ETDEWEB)

Campbell, W; Miften, M; Jones, B [Department of Radiation Oncology, University of Colorado School of Medicine, Aurora, CO (United States)

2016-06-15

Purpose: Pancreatic SBRT relies on extremely accurate delivery of ablative radiation doses to the target, and intra-fractional tracking of fiducial markers can facilitate improvements in dose delivery. However, this requires algorithms that are able to find fiducial markers with high speed and accuracy. The purpose of this study was to develop a novel marker tracking algorithm that is robust against many of the common errors seen with traditional template matching techniques. Methods: Using CBCT projection images, a method was developed to create detailed template images of fiducial marker clusters without prior knowledge of the number of markers, their positions, or their orientations. Briefly, the method (i) enhances markers in projection images, (ii) stabilizes the cluster’s position, (iii) reconstructs the cluster in 3D, and (iv) precomputes a set of static template images dependent on gantry angle. Furthermore, breathing data were used to produce 4D reconstructions of clusters, yielding dynamic template images dependent on gantry angle and breathing amplitude. To test these two approaches, static and dynamic templates were used to track the motion of marker clusters in more than 66,000 projection images from 75 CBCT scans of 15 pancreatic SBRT patients. Results: For both static and dynamic templates, the new technique was able to locate marker clusters present in projection images 100% of the time. The algorithm was also able to correctly locate markers in several instances where only some of the markers were visible due to insufficient field-of-view. In cases where clusters exhibited deformation and/or rotation during breathing, dynamic templates resulted in cross-correlation scores up to 70% higher than static templates. Conclusion: Patient-specific templates provided complete tracking of fiducial marker clusters in CBCT scans, and dynamic templates helped to provide higher cross-correlation scores for deforming/rotating clusters. This novel algorithm

Identification of sequence-related amplified polymorphism markers linked to the red leaf trait in ornamental kale (Brassica oleracea L. var. acephala).

Science.gov (United States)

Wang, Y S; Liu, Z Y; Li, Y F; Zhang, Y; Yang, X F; Feng, H

2013-04-02

Artistic diversiform leaf color is an important agronomic trait that affects the market value of ornamental kale. In the present study, genetic analysis showed that a single-dominant gene, Re (red leaf), determines the red leaf trait in ornamental kale. An F2 population consisting of 500 individuals from the cross of a red leaf double-haploid line 'D05' with a white leaf double-haploid line 'D10' was analyzed for the red leaf trait. By combining bulked segregant analysis and sequence-related amplified polymorphism technology, we identified 3 markers linked to the Re/re locus. A genetic map of the Re locus was constructed using these sequence-related amplified polymorphism markers. Two of the markers, Me8Em4 and Me8Em17, were located on one side of Re/re at distances of 2.2 and 6.4 cM, whereas the other marker, Me9Em11, was located on the other side of Re/re at a distance of 3.7 cM. These markers could be helpful for the subsequent cloning of the red trait gene and marker-assisted selection in ornamental kale breeding programs.

Epidermal stem cells: location, potential and contribution to cancer.

Science.gov (United States)

Ambler, C A; Määttä, A

2009-01-01

Epidermal stem cells have been classically characterized as slow-cycling, long-lived cells that reside in discrete niches in the skin. Gene expression studies of niche-resident cells have revealed a number of stem cell markers and regulators, including the Wnt/beta-catenin, Notch, p63, c-Myc and Hedgehog pathways. A new study challenges the traditional developmental paradigm of slow-cycling stem cells and rapid-cycling transit amplifying cells in some epidermal regions, and there is mounting evidence to suggest that multi-lineage epidermal progenitors can be isolated from highly proliferative, non-niche regions. Whether there is a unique microenvironment surrounding these progenitors remains to be determined. Interestingly, cancer stem cells derived from epidermal tumours exist independent of the classic skin stem cell niche, yet also have stem cell properties, including multi-lineage differentiation. This review summarizes recent studies identifying the location and regulators of mouse and human epidermal stem cells and highlights the strategies used to identify cancer stem cells, including expression of normal epidermal stem cell markers, expression of cancer stem cell markers identified in other epidermal tumours and characterization of side-population tumour cells.

Constrains in gamma spectrometry analysis of fallout 137Cs in coastal marine environment of Arabian sea in India

International Nuclear Information System (INIS)

Sartandel, S.J.; Jha, S.K.; Puranik, V.D.

2012-01-01

In this study, an accurate faster gamma spectrometry method for measuring the low level activity concentrations of 137 Cs using in situ pre-concentration technique on copper ferrocyanide cartridge was standardized. Due to unavailability of reference standard in the copper ferrocyanide matrix, efficiency calibration curves were plotted using RGU and RGTh reference standards. To harmonize the difference in density of standard and sample the required density correction factors for photo peak efficiency were generated. The in situ pre-concentration technique followed by gamma-ray spectrometry was applied for activity determination in surface seawater from eight locations in the coastal marine environment of Arabian Sea. The mean activity concentration of 137 Cs ranged between 0.71 and 0.91 Bq/m 3 . Higher activity concentrations were observed at location with latitude, longitude of 21.6 deg N, 69.57 deg E as compared to concentration observed at location with latitude, longitude 16.98 deg N, 73.25 deg E. The observed concentrations were found to be in range of data reported in Asia-Pacific Marine radioactive database (ASPARMARD). The results will fill up the gaps in the existing database. The generated data will be useful for monitoring fresh input of anthropogenic radionuclide into coastal marine environment for post Fukushima environmental assessment. (author)

Markers

Science.gov (United States)

Healthy Schools Network, Inc., 2011

2011-01-01

Dry erase whiteboards come with toxic dry erase markers and toxic cleaning products. Dry erase markers labeled "nontoxic" are not free of toxic chemicals and can cause health problems. Children are especially vulnerable to environmental health hazards; moreover, schools commonly have problems with indoor air pollution, as they are more densely…

Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot

KAUST Repository

Van Der Meer, Martin H.

2014-12-23

Marine protected areas (MPAs) aim to mitigate anthropogenic impacts by conserving biodiversity and preventing overfishing. The effectiveness of MPAs depends on population connectivity patterns between protected and non-protected areas. Remote islands are endemism hotspots for coral reef fishes and provide rare examples of coral reefs with limited fishing pressure. This study explored population genetic connectivity across a network of protected and non-protected areas for the endemic wrasse, Coris bulbifrons, which is listed as “vulnerable” by the IUCN due to its small, decreasing geographic range and declining abundance. Mitochondrial DNA (mtDNA) and microsatellite DNA (msatDNA) markers were used to estimate historic and contemporary gene flow to determine the level of population self-replenishment and to measure genetic and genotypic diversity among all four locations in the species range (south-west Pacific Ocean)—Middleton Reef (MR), Elizabeth Reef (ER), Lord Howe Island (LHI) and Norfolk Island (NI). MPAs exist at MR and LHI and are limited or non-existent at ER and NI, respectively. There was no obvious differentiation in mtDNA among locations, however, msatDNA revealed differentiation between the most peripheral (NI) and all remaining locations (MR, ER and LHI). Despite high mtDNA connectivity (M = 259–1,144), msatDNA connectivity was limited (M = 3–9) with high self-replenishment (68–93 %) at all locations. NI is the least connected and heavily reliant on self-replenishment, and the absence of MPAs at NI needs to be rectified to ensure the persistence of endemic species at this location. Other endemic fishes exhibit similar patterns of high self-replenishment across the four locations, indicating that a single spatial management approach consisting of a MPA network protecting part of each location could provide reasonable protection for these species. Thus, the existing network of MPAs at this endemic hotspot appears adequate at some locations

Creating a distortion characterisation dataset for visual band cameras using fiducial markers

CSIR Research Space (South Africa)

Jermy, R

2015-11-01

Full Text Available . This will allow other researchers to perform the same steps and create better algorithms to accurately locate fiducial markers and calibrate cameras. A second dataset that can be used to assess the accuracy of the stereo vision of two calibrated cameras is also...

Expert judgment on markers to deter inadvertent human intrusion into the Waste Isolation Pilot Plant

Energy Technology Data Exchange (ETDEWEB)

Trauth, K.M. [Sandia National Labs., Albuquerque, NM (United States); Hora, S.C. [Hawaii Univ., Hilo, HI (United States); Guzowski, R.V. [Science Applications International Corp., San Diego, CA (United States)

1993-11-01

The expert panel identified basic principles to guide current and future marker development efforts: (1) the site must be marked, (2) message(s) must be truthful and informative, (3) multiple components within a marker system, (4) multiple means of communication (e.g., language, pictographs, scientific diagrams), (5) multiple levels of complexity within individual messages on individual marker system elements, (6) use of materials with little recycle value, and (7) international effort to maintain knowledge of the locations and contents of nuclear waste repositories. The efficacy of the markers in deterring inadvertent human intrusion was estimated to decrease with time, with the probability function varying with the mode of intrusion (who is intruding and for what purpose) and the level of technological development of the society. The development of a permanent, passive marker system capable of surviving and remaining interpretable for 10,000 years will require further study prior to implementation.

Expert judgment on markers to deter inadvertent human intrusion into the Waste Isolation Pilot Plant

International Nuclear Information System (INIS)

Trauth, K.M.; Hora, S.C.; Guzowski, R.V.

1993-11-01

The expert panel identified basic principles to guide current and future marker development efforts: (1) the site must be marked, (2) message(s) must be truthful and informative, (3) multiple components within a marker system, (4) multiple means of communication (e.g., language, pictographs, scientific diagrams), (5) multiple levels of complexity within individual messages on individual marker system elements, (6) use of materials with little recycle value, and (7) international effort to maintain knowledge of the locations and contents of nuclear waste repositories. The efficacy of the markers in deterring inadvertent human intrusion was estimated to decrease with time, with the probability function varying with the mode of intrusion (who is intruding and for what purpose) and the level of technological development of the society. The development of a permanent, passive marker system capable of surviving and remaining interpretable for 10,000 years will require further study prior to implementation

Biodiversity protection and sustainable management of coastal areas: The Marine Protected Area of Egadi Islands

International Nuclear Information System (INIS)

Donati, Stefano

2015-01-01

The Marine Protected Area of Egadi Islands, northwest coast of Sicily Island, is the largest area in the Mediterranean Sea, stretching over with its 53,992 hectares. Established in 1991, since 2001 it is managed by the Municipality of Favignana on behalf of the Italian Ministry for the Environment, Land and Sea. The Egadi’s archipelago is located in the Strait of Sicily, and includes the islands of Favignana, Levanzo, Marettimo and the islets of Formica and Maraone. The institutional mission of the Marine Protected Area is the protection and enhancement of the marine environment, environmental education, awareness and information of users, research and monitoring, integrated management of the coastal zone, and the promotion of sustainable development, with particular reference to the eco-compatibility of tourism [it

Occurrence and sorption properties of arsenicals in marine sediments

DEFF Research Database (Denmark)

Fauser, Patrik; Sanderson, Hans; Hedegaard, Rikke Susanne Vingborg

2013-01-01

in marine sediments when conditions are similar to the Baltic Sea. At locations with significant anthropogenic point sources or where the local geology contains volcanic rock and sulphide mineral deposits, there may be significantly elevated arsenic concentrations, and it is recommended to determine on......The content of total arsenic, the inorganic forms: arsenite (As(III)) and arsenate (As(V)), the methylated forms: monomethylarsonic acid and dimethylarsinic acid (DMA), trimethylarsenic oxide, tetramethylarsenonium ion and arsenobetaine was measured in 95 sediment samples and 11 pore water samples...... in the Baltic Sea and other parts of the world. Existing data for on-site measurements of sorption coefficients (Kd) of arsenicals in marine and freshwater sediments show large variability from 1,000 L/kg. In this work, calculated sorption coefficients (Kd and Koc) for As(III+V) showed significant correlation...

Marine polar steroids

International Nuclear Information System (INIS)

Stonik, Valentin A

2001-01-01

Structures, taxonomic distribution and biological activities of polar steroids isolated from various marine organisms over the last 8-10 years are considered. The peculiarities of steroid biogenesis in the marine biota and their possible biological functions are discussed. Syntheses of some highly active marine polar steroids are described. The bibliography includes 254 references.

Investigating the potential use of environmental DNA (eDNA for genetic monitoring of marine mammals.

Directory of Open Access Journals (Sweden)

Andrew D Foote

Full Text Available The exploitation of non-invasive samples has been widely used in genetic monitoring of terrestrial species. In aquatic ecosystems, non-invasive samples such as feces, shed hair or skin, are less accessible. However, the use of environmental DNA (eDNA has recently been shown to be an effective tool for genetic monitoring of species presence in freshwater ecosystems. Detecting species in the marine environment using eDNA potentially offers a greater challenge due to the greater dilution, amount of mixing and salinity compared with most freshwater ecosystems. To determine the potential use of eDNA for genetic monitoring we used specific primers that amplify short mitochondrial DNA sequences to detect the presence of a marine mammal, the harbor porpoise, Phocoena phocoena, in a controlled environment and in natural marine locations. The reliability of the genetic detections was investigated by comparing with detections of harbor porpoise echolocation clicks by static acoustic monitoring devices. While we were able to consistently genetically detect the target species under controlled conditions, the results from natural locations were less consistent and detection by eDNA was less successful than acoustic detections. However, at one site we detected long-finned pilot whale, Globicephala melas, a species rarely sighted in the Baltic. Therefore, with optimization aimed towards processing larger volumes of seawater this method has the potential to compliment current visual and acoustic methods of species detection of marine mammals.

An assessment of natural product discovery from marine (sensu strictu) and marine-derived fungi

Science.gov (United States)

Overy, David P.; Bayman, Paul; Kerr, Russell G.; Bills, Gerald F.

2014-01-01

The natural products community has been investigating secondary metabolites from marine fungi for several decades, but when one attempts to search for validated reports of new natural products from marine fungi, one encounters a literature saturated with reports from ‘marine-derived’ fungi. Of the 1000+ metabolites that have been characterized to date, only approximately 80 of these have been isolated from species from exclusively marine lineages. These metabolites are summarized here along with the lifestyle and habitats of their producing organisms. Furthermore, we address some of the reasons for the apparent disconnect between the stated objectives of discovering new chemistry from marine organisms and the apparent neglect of the truly exceptional obligate marine fungi. We also offer suggestions on how to reinvigorate enthusiasm for marine natural products discovery from fungi from exclusive marine lineages and highlight the need for critically assessing the role of apparently terrestrial fungi in the marine environment. PMID:25379338

CD68/macrosialin: not just a histochemical marker.

Science.gov (United States)

Chistiakov, Dimitry A; Killingsworth, Murry C; Myasoedova, Veronika A; Orekhov, Alexander N; Bobryshev, Yuri V

2017-01-01

CD68 is a heavily glycosylated glycoprotein that is highly expressed in macrophages and other mononuclear phagocytes. Traditionally, CD68 is exploited as a valuable cytochemical marker to immunostain monocyte/macrophages in the histochemical analysis of inflamed tissues, tumor tissues, and other immunohistopathological applications. CD68 alone or in combination with other cell markers of tumor-associated macrophages showed a good predictive value as a prognostic marker of survival in cancer patients. Lowression of CD68 was found in the lymphoid cells, non-hematopoietic cells (fibroblasts, endothelial cells, etc), and tumor cells. Cell-specific CD68 expression and differentiated expression levels are determined by the complex interplay between transcription factors, regulatory transcriptional elements, and epigenetic factors. Human CD68 and its mouse ortholog macrosialin belong to the family of LAMP proteins located in the lysosomal membrane and share many structural similarities such as the presence of the LAMP-like domain. Except for a second LAMP-like domain present in LAMPs, CD68/microsialin has a highly glycosylated mucin-like domain involved in ligand binding. CD68 has been shown to bind oxLDL, phosphatidylserine, apoptotic cells and serve as a receptor for malaria sporozoite in liver infection. CD68 is mainly located in the endosomal/lysosomal compartment but can rapidly shuttle to the cell surface. However, the role of CD68 as a scavenger receptor remains to be confirmed. It seems that CD68 is not involved in binding bacterial/viral pathogens, innate, inflammatory or humoral immune responses, although it may potentially be involved in antigen processing/presentation. CD68 could be functionally important in osteoclasts since its deletion leads to reduced bone resorption capacity. The role of CD68 in atherosclerosis is contradictory.

Evaluating Effects of Marine Energy Devices on the Marine Environment - A Risk-Based and In-Water Testing Approach

Science.gov (United States)

Harker-Klimes, G.; Copping, A. E.

2016-02-01

The portfolio of emerging renewables includes generating power from offshore winds, tides, waves, and ocean currents, as well as seawater temperature and salinity differentials. These new systems are collectively known as marine renewable energy (MRE). MRE development worldwide is in the early stages of design, deployment, and commercialization. A major barrier to bringing these systems into commercial use is the need to overcome uncertainties in environmental effects that slow siting and permitting of devices. Using a risk-based approach, this paper will discuss pathways for evaluating potential effects of tidal turbines and wave energy converters (WECs) on marine animals, habitats, and ecosystem processes. Using basic biological principles and knowledge of specific MRE technologies, the Environmental Risk Evaluation System has been used to narrow pertinent risks from devices, enabling laboratory and field studies to focus on the most important interactions. These interactions, include: potential collisions and behavioral disturbances of marine mammals, fish and other organisms; effects of underwater sound on animal communication and navigation; changes in sediment transport, benthic habitats, and water quality constituents; and effects of electromagnetic fields on animals. It is then necessary to apply these findings to the projects themselves. Another uncertainty is how to measure these key interactions in high-energy locations where MRE deployment is desirable. Consequently, new systems are being developed: instrumentation, innovative platforms for deployment, and new management strategies for collecting and analyzing very large data streams. Inherent in this development pathway is the need to test, deploy, and calibrate these monitoring systems. The Triton initiative is designed to enable this development, and has initiated testing of devices in Washington State to move the MRE industry forward while protecting marine animals, habitats and processes.

Geo-Seas - building a unified e-infrastructure for marine geoscientific data management in Europe

Science.gov (United States)

Glaves, H.; Schaap, D.

2012-04-01

A significant barrier to marine geoscientific research in Europe is the lack of standardised marine geological and geophysical data and data products which could potentially facilitate multidisciplinary marine research extending across national and international boundaries. Although there are large volumes of geological and geophysical data available for the marine environment it is currently very difficult to use these datasets in an integrated way due to different nomenclatures, formats, scales and coordinate systems being used within different organisations as well as between countries. This makes the direct use of primary data very difficult and also hampers use of the data to produce integrated multidisciplinary data products and services. The Geo-Seas project, an EU Framework 7 funded initiative, is developing a unified e-infrastructure to facilitate the sharing of marine geoscientific data within Europe. This e-infrastructure is providing on-line access to both discovery metadata and the associated federated data sets from 26 European data centres via a dedicated portal. The implementation of the Geo-Seas portal is allowing a range of end users to locate, assess and access standardised geoscientific data from multiple sources which is interoperable with other marine data types. Geo-Seas is building on the work already done by the existing SeaDataNet project which currently provides a data management e-infrastructure for oceanographic data which allows users to locate and access federated oceanographic data sets. By adopting and adapting the SeaDataNet methodologies and technologies the Geo-Seas project has not only avoid unnecessary duplication of effort by reusing existing and proven technologies but also contributed to the development of a multidisciplinary approach to ocean science across Europe through the creation of a joint infrastructure for both marine geoscientific and oceanographic data. This approach is also leading to the development of

Location, location, location: Extracting location value from house prices

OpenAIRE

Kolbe, Jens; Schulz, Rainer; Wersing, Martin; Werwatz, Axel

2012-01-01

The price for a single-family house depends both on the characteristics of the building and on its location. We propose a novel semiparametric method to extract location values from house prices. After splitting house prices into building and land components, location values are estimated with adaptive weight smoothing. The adaptive estimator requires neither strong smoothness assumptions nor local symmetry. We apply the method to house transactions from Berlin, Germany. The estimated surface...

A recombination outside the BB deletion refines the location of the X-linked retinitis pigmentosa locus RP3

Energy Technology Data Exchange (ETDEWEB)

Fujita, R.; Bingham, E.; Forsythe, P.; McHenry, C. [Univ. of Michigan, Ann Arbor, MI (United States)] [and others

1996-07-01

Genetic loci for X-linked retinitis pigmentosa (XLRP) have been mapped between Xp11.22 and Xp22.13 (RP2, RP3, RP6, and RP15). The RP3 gene, which is responsible for the predominant form of XLRP in most Caucasian populations, has been localized to Xp21.1 by linkage analysis and the map positions of chromosomal deletions associated with the disease. Previous linkage studies have suggested that RP3 is flanked by the markers DXS1110 (distal) and OTC (proximal). Patient BB was though to have RP because of a lesion at the RP3 locus, in addition to chronic granulomatous disease, Duchenne muscular dystrophy (DMD), mild mental retardation, and the McLeod phenotype. This patient carried a deletion extending {approximately}3 Mb from DMD in Xp21.3 to Xp21.1, with the proximal breakpoint located {approximately}40 kb centromeric to DXS1110. The RP3 gene, therefore, is believed to reside between DXS1110 and the proximal breakpoint of the BB deletion. In order to refine the location of RP3 and to ascertain patients with RP3, we have been analyzing several XLRP families for linkage to Xp markers. Linkage analysis in an American family of 27 individuals demonstrates segregation of XLRP with markers in Xp21.1, consistent with the RP3 subtype. One affected male shows a recombination event proximal to DXS1110. Additional markers within the DXS1110-OTC interval show that the crossover is between two novel polymorphic markers, DXS8349 and M6, both of which are present in BB DNA and lie centromeric to the proximal breakpoint. This recombination places the XLRP mutation in this family outside the BB deletion and redefines the location of RP3. 22 refs., 3 figs., 2 tabs.

Observation at the planet Mercury by the plasma electron experiment: Mariner Mariner 10

International Nuclear Information System (INIS)

Ogilvie, K.W.; Scudder, J.D.; Vasyliunas, V.M.; Hartle, R.E.; Siscoe, G.L.

1977-01-01

Plasma electron observations made on board Mariner 10 during its three encounters with the planet Mercury show that the planet interacts with the solar wind to form a bow shock and a permanent magnetosphere. The observations provide a determination of the dimensions and properties of the magnetosphere, independently of and in general agreement with magnetometer observations. The magnetosphere of Mercury appears to be similar in shape to that of the earth but much smaller in relation to the size of the planet. The average distance from the center of Mercury to the subsolar point of the magnetopause is approx.1.4 planetary radii. Electron populations similar to those found in the earth's magneto-tail, within the plasma sheet and adjacent regions, were observed at Mercury; both their spatial location and the electron energy spectra within them bear qualitative and quantitative resemblance to corresponding observations at the earth. In general, the magnetosphere of Mercury resembles to a marked degree a reduced version of that of the earth, there being no significant differences of structure revealed by the Mariner 10 observations. Quantities in the two magnetospheres are related by simple scaling laws. The size of Mercury relative to its magnetosphere precludes, however, the existence of stably trapped particle belts and of inner magnetosphere (Lapproximately-less-than8 at the earth) phenomena generally

The use of henna as an alternative skin marker in breast disease

International Nuclear Information System (INIS)

Griffiths, Anna; Murphy, Fred

2012-01-01

The aim of this study was to identify an alternative temporary skin marker that could be used to mark the skin of the breast prior to surgery, providing the surgeon with longer lasting accurate guidance to the location of the patient's breast lesion. Materials and methods: The upper quadrant of the breast was marked on all participants (n = 20) with a code in both henna and the conventional skin marker and photographic images were taken every 3 days for 2 weeks to assess the degree of fade. In addition a questionnaire (n = 136) surveyed current clinical practice amongst other breast services in the region. Results: This study found that henna lasted on average 6 days longer on study participants than the original skin marker used. The skin marker lasted on average 3 days whereas henna lasted on average 9 days, in addition participants who showered and used body wash/soap found that the henna skin marker lasted longer on the skin than participants' who bathed and used exfoliate. The survey revealed comments on current products such as sterility, ease of use and quick to apply but interestingly only 9% considered their current marker to be clearly visible. Conclusion: Henna is an effective temporary skin marker that could be used to mark the breast of patients with breast disease pre-operatively. It is cost effective when purchased in bulk, is more easily applied over ultrasound gel and has the potential to reduce infection prior to surgery.

Marine Hydrokinetic (MHK) Systems: A Systems Engineering Approach to Select Locations for the Practical Harvest of Electricity from Shallow Water Tidal Currents

Science.gov (United States)

Domenech, John

Due to increasing atmospheric CO2 concentration and its effect on global climates, the United States Environmental Protection Agency (EPA) proposes a Clean Power Plan (CPP) mandating CO2 reductions which will likely force the early retirement of inefficient, aging power plants. Consequentially, removing these plants equates to a shortfall of approximately 66 GW of electricity. These factors add to the looming resource problems of choosing whether to build large replacement power plants or consider alternative energy sources as a means to help close the gap between electricity supply and demand in a given region. One energy source, shallow water tidal currents, represents opportunities to convert kinetic energy to mechanical forms and provide electricity to homes and businesses. Nearly 2,000 National Oceanic Atmospheric Administration (NOAA) tidal current data points from Maine to Texas are considered. This paper, based on systems engineering thinking, provides key attributes (e.g. turbine efficiency, array size, transmission losses) for consideration as decision makers seek to identify where to site Marine Hydrokinetic (MHK) systems and the number of homes powered by the practical harvest of electricity from tidal currents at those locations with given attributes. A systems engineering process model is proposed for consideration as is a regression based equation to estimate MHK machine parameters needed for power a given number of homes.

Analysis of potato virus X replicase and TGBp3 subcellular locations

International Nuclear Information System (INIS)

Bamunusinghe, Devinka; Hemenway, Cynthia L.; Nelson, Richard S.; Sanderfoot, Anton A.; Ye, Chang M.; Silva, Muniwarage A.T.; Payton, M.; Verchot-Lubicz, Jeanmarie

2009-01-01

Potato virus X (PVX) infection leads to certain cytopathological modifications of the host endomembrane system. The subcellular location of the PVX replicase was previously unknown while the PVX TGBp3 protein was previously reported to reside in the ER. Using PVX infectious clones expressing the green fluorescent protein reporter, and antisera detecting the PVX replicase and host membrane markers, we examined the subcellular distribution of the PVX replicase in relation to the TGBp3. Confocal and electron microscopic observations revealed that the replicase localizes in membrane bound structures that derive from the ER. A subset of TGBp3 resides in the ER at the same location as the replicase. Sucrose gradient fractionation showed that the PVX replicase and TGBp3 proteins co-fractionate with ER marker proteins. This localization represents a region where both proteins may be synthesized and/or function. There is no evidence to indicate that either PVX protein moves into the Golgi apparatus. Cerulenin, a drug that inhibits de novo membrane synthesis, also inhibited PVX replication. These combined data indicate that PVX replication relies on ER-derived membrane recruitment and membrane proliferation.

Studying and developing main nuclear analytical techniques for assessment of the present situation of marine environmental radioactivity in some typical regions of Vietnam

International Nuclear Information System (INIS)

Nguyen Trong Ngo; Nguyen Thanh Binh; Phan Son Hai; Mai Thi Huong; Nguyen Thi Linh; Nguyen Van Phuc; Le Nhu Sieu; Nguyen Mong Sinh, Truong Y; Le Ngoc Chung

2003-01-01

Typical output of the study is presented, including: 1/ establishing standard procedures for the determination of 238 U and 230 Th radionuclide concentration in marine environmental samples; 2/ acquiring baseline data for the main radionuclide concentration in marine environmental materials (water, sediment and biota) collected from suitable key coastal locations of Vietnam. (NTN)

Carotenoids in Marine Animals

Science.gov (United States)

Maoka, Takashi

2011-01-01

Marine animals contain various carotenoids that show structural diversity. These marine animals accumulate carotenoids from foods such as algae and other animals and modify them through metabolic reactions. Many of the carotenoids present in marine animals are metabolites of β-carotene, fucoxanthin, peridinin, diatoxanthin, alloxanthin, and astaxanthin, etc. Carotenoids found in these animals provide the food chain as well as metabolic pathways. In the present review, I will describe marine animal carotenoids from natural product chemistry, metabolism, food chain, and chemosystematic viewpoints, and also describe new structural carotenoids isolated from marine animals over the last decade. PMID:21566799

St. James marine terminal facility description

Energy Technology Data Exchange (ETDEWEB)

1993-10-01

The US Department of Energy (DOE) currently owns and operates a marine terminal on the west bank of the Mississippi River at St. James, Louisiana. The St. James facility was constructed by the Department to provide marine services associated with the fill and drawdown of the Strategic Petroleum Reserve (SPR) crude oil storage facilities located at Bayou Choctaw and Weeks Island, Louisiana. Although strategic to the mission of the SPR in the event of a national emergency, the St. James terminal is situated such that it has a high potential to also serve the commercial industry`s needs for crude oil terminalling and storage. The St. James terminal is located approximately 45 miles west of New Orleans and 30 miles southeast of Baton Rouge, and approximately 160 miles upstream from the mouth of the Mississippi River. Construction of the St. James terminal was initiated in 1978 and was completed in 1980. Since then, the terminal has received and transferred over 125 million barrels of crude oil to the SPR sites for storage. For crude oil distribution, the St. James terminal was connected to the neighboring LOCAP terminal by a 0.1 mile 36-inch pipeline in 1981 and to the Capline terminal by a 0.5 mile 30-inch pipeline in 1988. The terminal also has a 30-inch pipeline connection to the Koch oil terminal which was used for initial fill purposes; however, this pipeline has been disconnected and is currently inactive. A complete description of the St. James terminal facilities, operational capabilities, operational certifications, and future Government requirements are presented in Sections 2, 3, 4, and 5 respectively.

Marine Biomedicine

Science.gov (United States)

Bang, Frederik B.

1977-01-01

Describes early scientific research involving marine invertebrate pathologic processes that may have led to new insights into human disease. Discussed are inquiries of Metchnikoff, Loeb, and Cantacuzene (immunolgic responses in sea stars, horseshoe crabs, and marine worms, respectively). Describes current research stemming from these early…

Marine Biology

Science.gov (United States)

Dewees, Christopher M.; Hooper, Jon K.

1976-01-01

A variety of informational material for a course in marine biology or oceanology at the secondary level is presented. Among the topics discussed are: food webs and pyramids, planktonic blooms, marine life, plankton nets, food chains, phytoplankton, zooplankton, larval plankton and filter feeders. (BT)

Galectin-3, a marker of cardiac remodeling, is inversely related to serum levels of marine omega-3 fatty acids. A cross-sectional study

DEFF Research Database (Denmark)

Laake, K; Seljeflot, I; Schmidt, E B

2017-01-01

OBJECTIVE: Marine polyunsaturated n-3 fatty acids (n-3 PUFA) may have cardioprotective effects and beneficial influence on the fibrotic process. We evaluated the associations between serum marine n-3 PUFA and selected biomarkers of fibrosis and cardiac remodeling in elderly patients with acute...... myocardial infarction. RESULTS: Gal-3 was inversely correlated to eicosapentaenoic acid (r = -.120, p = .039) and docosahexaenoic acid (r = -.125, p = .031) and positively correlated to the n-6/n-3 ratio (r = .131, p = .023). Gal-3 levels were significantly higher in diabetics vs non-diabetics (12.00 vs 9.......61 ng/mL, p = .007) and in patients with NYHA class ≥III for dyspnea at inclusion (11.33 vs 9.75 ng/mL, p = .006). CONCLUSIONS: The associations between the marine n-3 PUFA and levels of Gal-3 indicate beneficial effects of n-3 PUFA on cardiac remodeling in an elderly population with acute myocardial...

Active Marine Station Metadata

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Active Marine Station Metadata is a daily metadata report for active marine bouy and C-MAN (Coastal Marine Automated Network) platforms from the National Data...

Sensors for isolation of anti-cancer compounds found within marine invertebrates

Science.gov (United States)

Wiegand, Gordon; LaRue, Amanda

2015-05-01

Highly evolved bacteria living within immobile marine animals are being targeted as a source of antitumor pharmaceuticals. This paper describes 2 electo-optical sensor systems developed for identifying species of tunicates and actinobacteria that live within them. Two stages of identification include 1) a benthic survey apparatus to locate species and 2) a laboratory housed cell analysis platform used to classify their bacterial micro-biome. Marine Optics Sampling- There are over 3000 species of Tunicates that thrive in diverse habitats. We use a system of cameras, GPS and the GPS/photo integration application on a PC laptop to compile a time / location stamp for each image taken during the dive survey. A shape-map of x/y coordinates of photos are stored for later identification and sampling. Flow Cytometers/cell sorters housed at The Medical University of South Carolina and The University of Maryland have been modified to produce low-noise, high signal wave forms used for bacteria analysis. We strive to describe salient contrasts between these two fundamentally different sensor systems. Accents are placed on analog transducers and initial step sensing systems and output.

Characterizing Marine Soundscapes.

Science.gov (United States)

Erbe, Christine; McCauley, Robert; Gavrilov, Alexander

2016-01-01

The study of marine soundscapes is becoming widespread and the amount of data collected is increasing rapidly. Data owners (typically academia, industry, government, and defense) are negotiating data sharing and generating potential for data syntheses, comparative studies, analyses of trends, and large-scale and long-term acoustic ecology research. A problem is the lack of standards and commonly agreed protocols for the recording of marine soundscapes, data analysis, and reporting that make a synthesis and comparison of results difficult. We provide a brief overview of the components in a marine soundscape, the hard- and software tools for recording and analyzing marine soundscapes, and common reporting formats.

Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat.

Science.gov (United States)

Mourad, Amira M I; Sallam, Ahmed; Belamkar, Vikas; Wegulo, Stephen; Bowden, Robert; Jin, Yue; Mahdy, Ezzat; Bakheit, Bahy; El-Wafaa, Atif A; Poland, Jesse; Baenziger, Peter S

2018-01-01

Stem rust (caused by Puccinia graminis f. sp. tritici Erikss. & E. Henn.), is a major disease in wheat ( Triticum aestivium L.). However, in recent years it occurs rarely in Nebraska due to weather and the effective selection and gene pyramiding of resistance genes. To understand the genetic basis of stem rust resistance in Nebraska winter wheat, we applied genome-wide association study (GWAS) on a set of 270 winter wheat genotypes (A-set). Genotyping was carried out using genotyping-by-sequencing and ∼35,000 high-quality SNPs were identified. The tested genotypes were evaluated for their resistance to the common stem rust race in Nebraska (QFCSC) in two replications. Marker-trait association identified 32 SNP markers, which were significantly (Bonferroni corrected P < 0.05) associated with the resistance on chromosome 2D. The chromosomal location of the significant SNPs (chromosome 2D) matched the location of Sr6 gene which was expected in these genotypes based on pedigree information. A highly significant linkage disequilibrium (LD, r 2 ) was found between the significant SNPs and the specific SSR marker for the Sr6 gene ( Xcfd43 ). This suggests the significant SNP markers are tagging Sr6 gene. Out of the 32 significant SNPs, eight SNPs were in six genes that are annotated as being linked to disease resistance in the IWGSC RefSeq v1.0. The 32 significant SNP markers were located in nine haplotype blocks. All the 32 significant SNPs were validated in a set of 60 different genotypes (V-set) using single marker analysis. SNP markers identified in this study can be used in marker-assisted selection, genomic selection, and to develop KASP (Kompetitive Allele Specific PCR) marker for the Sr6 gene. Novel SNPs for Sr6 gene, an important stem rust resistant gene, were identified and validated in this study. These SNPs can be used to improve stem rust resistance in wheat.

The REDCAM, institutional Cooperation for the Surveillance of the Quality of the Marine and Coastal waters in Colombia

International Nuclear Information System (INIS)

Ana Maria Velez G; Marin Z, Bienvenido; Garay T, Jesus A

2003-01-01

The Colombian Marine Environment Monitoring Network (REDCAM) initiated in 2001, with the purpose of grouping the institutions and the efforts necessary to evaluate the chemical and sanitary quality of the marine and estuarine waters of Colombia; it is composed of 16 nodes and main server located at INVEMAR (Santa Marta); each node counts with hardware and software for a Input and retrieval tables and cartographic information a about the quality o marine and coastal waters of Colombia. It was established a network of field stations that covers most of the Colombian coasts. In each one, since 2001, twice a year, it has been registering the values of the main physicochemical and bacteriological variables that characterize the quality of the marine and estuarine waters. Based on this information, the following zones have been identified as critical for its marine and coastal pollution: Santa Marta, Cartagena, Barranquilla, Morrosquillo, Uraba and San Andres, in the Caribbean coast and Buenaventura, Guapi and La Tola in Pacific coast

Chromosomal stasis in distinct families of marine Percomorpharia from South Atlantic.

Science.gov (United States)

Paim, Fabilene Gomes; Almeida, Leandro Aragão da Hora; Affonso, Paulo Roberto Antunes de Mello; Sobrinho-Scudeler, Patrícia Elda; Oliveira, Claudio; Diniz, Débora

2017-01-01

The weakness of physical barriers in the marine environment and the dispersal potential of fish populations have been invoked as explanations of the apparent karyotype stasis of marine Percomorpha, but several taxa remain poorly studied cytogenetically. To increase the chromosomal data in this fish group, we analyzed cytogenetically three widespread Atlantic species from distinct families: Chaetodipterus faber Broussonet, 1782 (Ephippidae), Lutjanus synagris Linnaeus, 1758 (Lutjanidae) and Rypticus randalli Courtenay, 1967 (Serranidae). The three species shared a karyotype composed of 2n=48 acrocentric chromosomes, single nucleolus organizer regions (NORs) and reduced amounts of centromeric heterochromatin. A single NOR-bearing pair was identified in all species by physical mapping of 18S rDNA while non-syntenic 5S rRNA genes were located at centromeric region of a single pair. The similar karyotypic macrostructure observed in unrelated groups of Percomorpharia reinforces the conservative karyoevolution of marine teleosteans. Nonetheless, the species could be differentiated based on the pair bearing ribosomal cistrons, revealing the importance of microstructural analyses in species with symmetric and stable karyotypes.

Carotenoids in Marine Animals

OpenAIRE

Maoka, Takashi

2011-01-01

Marine animals contain various carotenoids that show structural diversity. These marine animals accumulate carotenoids from foods such as algae and other animals and modify them through metabolic reactions. Many of the carotenoids present in marine animals are metabolites of β-carotene, fucoxanthin, peridinin, diatoxanthin, alloxanthin, and astaxanthin, etc. Carotenoids found in these animals provide the food chain as well as metabolic pathways. In the present review, I will describe marine a...

Marine Science

African Journals Online (AJOL)

Aims and scope: The Western Indian Ocean Journal of Marine Science provides an avenue for the wide dissem- ination of high ... or by any means without permission in writing from the copyright holder. ..... Journal of Chemical Engineering Research and Design 82 ... Indian Ocean Marine Science Association Technical.

Genetic identification of bucktooth parrotfish Sparisoma radians (Valenciennes, 1840 (Labridae, Scarinae by chromosomal and molecular markers

Directory of Open Access Journals (Sweden)

Fabilene Gomes Paim

2014-12-01

Full Text Available Parrotfishes (Labridae, Scarinae comprise a large marine fish group of difficult identification, particularly during juvenile phase when the typical morphology and coloration of adults are absent. Therefore, the goal of this study was to test cytogenetic markers and DNA barcoding in the identification of bucktooth parrtotfish Sparisoma radians from the northeastern coast of Brazil. Sequencing of cytochrome c oxidase subunit I (COI confirmed all studied samples as S. radians, and all showed high similarity (99-100% with Caribbean populations. The karyotype of this species was divergent from most marine Perciformes, being composed of 2n = 46 chromosomes. These consisted of a large number of metacentric and submetacentric pairs with small amounts of heterochromatin and GC-rich single nucleolar organizer regions (NORs not syntenic to 5S rDNA clusters. These are the first data about DNA barcoding in parrotfish from the Brazilian province and the first refined chromosomal analysis in Scarinae, providing useful data to a reliable genetic identification of S. radians.

Development of a marine fish model for studying in vivo molecular responses in ecotoxicology

International Nuclear Information System (INIS)

Kong, R.Y.C.; Giesy, J.P.; Wu, R.S.S.; Chen, E.X.H.; Chiang, M.W.L.; Lim, P.L.; Yuen, B.B.H.; Yip, B.W.P.; Mok, H.O.L.; Au, D.W.T.

2008-01-01

A protocol for fixation and processing of whole adult marine medaka (Oryzias melastigma) was developed in parallel with in situ hybridization (ISH) and immunohistochemistry (IHC) for molecular analysis of in vivo gene and protein responses in fish. Over 200 serial sagittal sections (5 μm) can be produced from a single adult medaka to facilitate simultaneous localization and quantification of gene-specific mRNAs and proteins in different tissues and subcellular compartments of a single fish. Stereological analysis (as measured by volume density, V v ) was used to quantify ISH and IHC signals on tissue sections. Using the telomerase reverse transcriptase (omTERT) gene, omTERT and proliferating cell nuclear antigen (PCNA) proteins as examples, we demonstrated that it is possible to localize, quantify and correlate their tissue expression profiles in a whole fish system. Using chronic hypoxia (1.8 ± 0.2 mg O 2 L -1 for 3 months) as an environmental stressor, we were able to identify significant alterations in levels of omTERT mRNA, omTERT protein, PCNA (cell proliferation marker) and TUNEL (apoptosis) in livers of hypoxic O. melastigma (p < 0.05). Overall, the results suggest that O. melastigma can serve as a model marine fish for assessing multiple in vivo molecular responses to stresses in the marine environment

Marine animal stings or bites

Science.gov (United States)

Stings - marine animals; Bites - marine animals ... Things you can do to prevent a marine animal sting or bite include: Swim near a lifeguard. Observe posted signs that may warn of danger from jellyfish or other hazardous marine life. ...

Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status

KAUST Repository

Danovaro, Roberto; Carugati, Laura; Berzano, Marco; Cahill, Abigail E.; Carvalho, Susana; Chenuil, Anne; Corinaldesi, Cinzia; Cristina, Sonia; David, Romain; Dell'Anno, Antonio; Dzhembekova, Nina; Garcé s, Esther; Gasol, Joseph M.; Goela, Priscila; Fé ral, Jean-Pierre; Ferrera, Isabel; Forster, Rodney M.; Kurekin, Andrey A.; Rastelli, Eugenio; Marinova, Veselka; Miller, Peter I.; Moncheva, Snejana; Newton, Alice; Pearman, John K.; Pitois, Sophie G.; Reñ é , Albert; Rodrí guez-Ezpeleta, Naiara; Saggiomo, Vincenzo; Simis, Stefan G. H.; Stefanova, Kremena; Wilson, Christian; Lo Martire, Marco; Greco, Silvestro; Cochrane, Sabine K. J.; Mangoni, Olga; Borja, Angel

2016-01-01

Marine environmental monitoring has tended to focus on site-specific methods of investigation. These traditional methods have low spatial and temporal resolution and are relatively labor intensive per unit area/time that they cover. To implement the Marine Strategy Framework Directive (MSFD), European Member States are required to improve marine monitoring and design monitoring networks. This can be achieved by developing and testing innovative and cost-effective monitoring systems, as well as indicators of environmental status. Here, we present several recently developed methodologies and technologies to improve marine biodiversity indicators and monitoring methods. The innovative tools are discussed concerning the technologies presently utilized as well as the advantages and disadvantages of their use in routine monitoring. In particular, the present analysis focuses on: (i) molecular approaches, including microarray, Real Time quantitative PCR (qPCR), and metagenetic (metabarcoding) tools; (ii) optical (remote) sensing and acoustic methods; and (iii) in situ monitoring instruments. We also discuss their applications in marine monitoring within the MSFD through the analysis of case studies in order to evaluate their potential utilization in future routine marine monitoring. We show that these recently-developed technologies can present clear advantages in accuracy, efficiency and cost.

Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status

KAUST Repository

Danovaro, Roberto

2016-11-23

Marine environmental monitoring has tended to focus on site-specific methods of investigation. These traditional methods have low spatial and temporal resolution and are relatively labor intensive per unit area/time that they cover. To implement the Marine Strategy Framework Directive (MSFD), European Member States are required to improve marine monitoring and design monitoring networks. This can be achieved by developing and testing innovative and cost-effective monitoring systems, as well as indicators of environmental status. Here, we present several recently developed methodologies and technologies to improve marine biodiversity indicators and monitoring methods. The innovative tools are discussed concerning the technologies presently utilized as well as the advantages and disadvantages of their use in routine monitoring. In particular, the present analysis focuses on: (i) molecular approaches, including microarray, Real Time quantitative PCR (qPCR), and metagenetic (metabarcoding) tools; (ii) optical (remote) sensing and acoustic methods; and (iii) in situ monitoring instruments. We also discuss their applications in marine monitoring within the MSFD through the analysis of case studies in order to evaluate their potential utilization in future routine marine monitoring. We show that these recently-developed technologies can present clear advantages in accuracy, efficiency and cost.

DNA markers provide insight about common lime in historicalplantings

DEFF Research Database (Denmark)

Hansen, Ole Kim; Thomsen, Pernille; Rasmussen, Christine Waage

2014-01-01

As part of the restoration process of an avenue of common lime (Tilia × europaea) from 1760 in the Royal Danish Gardens, all remaining trees were genotyped with DNA markers before they were felled. As such, information about the nature of the plant material (clonal versus non-clonal) and mode...... of propagation was obtained, revealing that a single clone constituted 92% of the remaining trees (106 out of 115). Five trees were of another clone, while the remaining four trees had unique genotypes. Mode of clonal propagation was most likely layering since the genotype of the crown and the roots...... of a subsample of the trees had the same genotype. Trees from four other locations with historical avenues/plantings from the 17th century were also genotyped. The two clones registered in the first location were also found at the other four locations. Of 76 trees from the other historical avenues...

Markers for nutrition studies: review of criteria for the evaluation of markers.

Science.gov (United States)

de Vries, Jan; Antoine, Jean-Michel; Burzykowski, Tomasz; Chiodini, Alessandro; Gibney, Mike; Kuhnle, Gunter; Méheust, Agnès; Pijls, Loek; Rowland, Ian

2013-10-01

Markers are important tools to assess the nutrition status and effects of nutrition interventions. There is currently insufficient consensus in nutrition sciences on how to evaluate markers, despite the need for properly evaluating them. To identify the criteria for the evaluation of markers related to nutrition, health and disease and to propose generic criteria for evaluation. The report on "Evaluation of Biomarker and Surrogate Endpoints in Chronic Disease" from the Institute of Medicine was the starting point for the literature search. Additionally, specific search strategies were developed for Pubmed. In nutrition, no set of criteria or systematic approach to evaluate markers is currently available. There is a reliance on the medical area where statistical methods have been developed to quantify the evaluation of markers. Even here, a systematic approach is lacking-markers are still evaluated on a case-by-case basis. The review of publications from the literature search resulted in a database with definitions, criteria for validity and the rationale behind the criteria. It was recognized that, in nutrition, a number of methodological aspects differ from medical research. The following criteria were identified as essential elements in the evaluation of markers: (1) the marker has a causal biological link with the endpoint, (2) there is a significant association between marker and endpoint in the target population, (3) marker changes consistently with the endpoint, e.g., in response to an intervention, and (4) change in the marker explains a substantial proportion of the change in the endpoint in response to the intervention.

MRNIDX - Marine Data Index: Database Description, Operation, Retrieval, and Display

Science.gov (United States)

Paskevich, Valerie F.

1982-01-01

A database referencing the location and content of data stored on magnetic medium was designed to assist in the indexing of time-series and spatially dependent marine geophysical data collected or processed by the U. S. Geological Survey. The database was designed and created for input to the Geologic Retrieval and Synopsis Program (GRASP) to allow selective retrievals of information pertaining to location of data, data format, cruise, geographical bounds and collection dates of data. This information is then used to locate the stored data for administrative purposes or further processing. Database utilization is divided into three distinct operations. The first is the inventorying of the data and the updating of the database, the second is the retrieval of information from the database, and the third is the graphic display of the geographical boundaries to which the retrieved information pertains.

A marine biogeochemical perspective on black shale deposition

Science.gov (United States)

Piper, D. Z.; Calvert, S. E.

2009-06-01

Deposition of marine black shales has commonly been interpreted as having involved a high level of marine phytoplankton production that promoted high settling rates of organic matter through the water column and high burial fluxes on the seafloor or anoxic (sulfidic) water-column conditions that led to high levels of preservation of deposited organic matter, or a combination of the two processes. Here we review the hydrography and the budgets of trace metals and phytoplankton nutrients in two modern marine basins that have permanently anoxic bottom waters. This information is then used to hindcast the hydrography and biogeochemical conditions of deposition of a black shale of Late Jurassic age (the Kimmeridge Clay Formation, Yorkshire, England) from its trace metal and organic carbon content. Comparison of the modern and Jurassic sediment compositions reveals that the rate of photic zone primary productivity in the Kimmeridge Sea, based on the accumulation rate of the marine fraction of Ni, was as high as 840 g organic carbon m - 2 yr -1. This high level was possibly tied to the maximum rise of sea level during the Late Jurassic that flooded this and other continents sufficiently to allow major open-ocean boundary currents to penetrate into epeiric seas. Sites of intense upwelling of nutrient-enriched seawater would have been transferred from the continental margins, their present location, onto the continents. This global flooding event was likely responsible for deposition of organic matter-enriched sediments in other marine basins of this age, several of which today host major petroleum source rocks. Bottom-water redox conditions in the Kimmeridge Sea, deduced from the V:Mo ratio in the marine fraction of the Kimmeridge Clay Formation, varied from oxic to anoxic, but were predominantly suboxic, or denitrifying. A high settling flux of organic matter, a result of the high primary productivity, supported a high rate of bacterial respiration that led to the

Coral reef fish species survey data GIS from the Florida Keys National Marine Sanctuary (NODC Accession 0001394)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set consists of an ArcView shapefile set that contains locations of sampled coral reef fish species at the National Marine Sanctuary along the Florida...

An Analysis of Ship-Source Marine Pollution in Nigeria Seaports

Directory of Open Access Journals (Sweden)

D. E. Onwuegbuchunam

2017-08-01

Full Text Available Existing studies indicate that marine pollution control in the ports of developing economies is marred by a lack of administrative control and inadequate provision of waste reception facilities. In Nigeria ports, ship generated waste control services and provision of waste reception facilities are outsourced to private companies with no requirement for an activity audit. Apart from the port authority, other government agencies are also involved in pollution monitoring and control. Hence, functions are duplicated and effective regulation is arguably weakened by conflicts of interest. A scientific based integrated model is therefore proposed to address the managerial problem posed in the control of marine pollution in Nigerian ports. In this paper, we conduct a physico-chemical and microbiological analysis of samples of ships’ wastewater to determine the status of marine pollution in the port environment. The samples were collected from randomly selected ships at berths in seaport locations. The outputs from the analysis are then integrated as inputs into an administrative framework model. The integrated model developed is proposed as an alternative administrative tool for monitoring and controlling pollution in seaports. The policy implications of the developed model are discussed.

High Retention and Safety of Percutaneously Implanted Endovascular Embolization Coils as Fiducial Markers for Image-Guided Stereotactic Ablative Radiotherapy of Pulmonary Tumors

International Nuclear Information System (INIS)

Hong, Julian C.; Yu Yao; Rao, Aarti K.; Dieterich, Sonja; Maxim, Peter G.; Le, Quynh-Thu; Diehn, Maximilian; Sze, Daniel Y.; Kothary, Nishita; Loo, Billy W.

2011-01-01

Purpose: To compare the retention rates of two types of implanted fiducial markers for stereotactic ablative radiotherapy (SABR) of pulmonary tumors, smooth cylindrical gold 'seed' markers ('seeds') and platinum endovascular embolization coils ('coils'), and to compare the complication rates associated with the respective implantation procedures. Methods and Materials: We retrospectively analyzed the retention of percutaneously implanted markers in 54 consecutive patients between January 2004 and June 2009. A total of 270 markers (129 seeds, 141 coils) were implanted in or around 60 pulmonary tumors over 59 procedures. Markers were implanted using a percutaneous approach under computed tomography (CT) guidance. Postimplantation and follow-up imaging studies were analyzed to score marker retention relative to the number of markers implanted. Markers remaining near the tumor were scored as retained. Markers in a distant location (e.g., pleural space) were scored as lost. CT imaging artifacts near markers were quantified on radiation therapy planning scans. Results: Immediately after implantation, 140 of 141 coils (99.3%) were retained, compared to 110 of 129 seeds (85.3%); the difference was highly significant (p < 0.0001). Of the total number of lost markers, 45% were reported lost during implantation, but 55% were lost immediately afterwards. No additional markers were lost on longer-term follow-up. Implanted lesions were peripherally located for both seeds (mean distance, 0.33 cm from pleural surface) and coils (0.34 cm) (p = 0.96). Incidences of all pneumothorax (including asymptomatic) and pneumothorax requiring chest tube placement were lower in implantation of coils (23% and 3%, respectively) vs. seeds (54% and 29%, respectively; p = 0.02 and 0.01). The degree of CT artifact was similar between marker types. Conclusions: Retention of CT-guided percutaneously implanted coils is significantly better than that of seed markers. Furthermore, implanting coils is at

Otters, Marine

Science.gov (United States)

Estes, James A.; Bodkin, James L.; Ben-David, M.; Perrin, William F.; Würsing, Bernd; Thewissen, J.G.M.

2009-01-01

The otters (Mustelidae; Lutrinae) provide an exceptional perspective into the evolution of marine living by mammals. Most extant marine mammals (e.g. the cetaceans, pinnipeds, and sirenians) have been so highly modified by long periods of selection for life in the sea that they bear little resemblance to their terrestrial ancestors. Marine otters, in contrast, are more recent expatriates from freshwater habitats and some species still live in both environments. Contrasts among species within the otters, and among the otters, terrestrial mammals, and the more highly adapted pinnipeds and cetaceans provide powerful insights into mammalian adaptations to life in the sea (Estes, 1989). Among the marine mammals, sea otters (Enhydra lutris, Fig. 1) provide the clearest understanding of consumer-induced effects on ecosystem function. This is due in part to opportunities provided by history and in part to the relative ease with which shallow coastal systems where sea otters live can be observed and studied. Although more difficult to study than sea otters, other otter species reveal the connectivity among the marine, freshwater, and terrestrial systems. These three qualities of the otters – their comparative biology, their role as predators, and their role as agents of ecosystem connectivity – are what make them interesting to marine mammalogy.The following account provides a broad overview of the comparative biology and ecology of the otters, with particular emphasis on those species or populations that live in the sea. Sea otters are features prominently, in part because they live exclusively in the sea whereas other otters have obligate associations with freshwater and terrestrial environments (Kenyon, 1969; Riedman and Estes, 1990).

Marker-controlled watershed for lymphoma segmentation in sequential CT images

International Nuclear Information System (INIS)

Yan Jiayong; Zhao Binsheng; Wang, Liang; Zelenetz, Andrew; Schwartz, Lawrence H.

2006-01-01

Segmentation of lymphoma containing lymph nodes is a difficult task because of multiple variables associated with the tumor's location, intensity distribution, and contrast to its surrounding tissues. In this paper, we present a reliable and practical marker-controlled watershed algorithm for semi-automated segmentation of lymphoma in sequential CT images. Robust determination of internal and external markers is the key to successful use of the marker-controlled watershed transform in the segmentation of lymphoma and is the focus of this work. The external marker in our algorithm is the circle enclosing the lymphoma in a single slice. The internal marker, however, is determined automatically by combining techniques including Canny edge detection, thresholding, morphological operation, and distance map estimation. To obtain tumor volume, the segmented lymphoma in the current slice needs to be propagated to the adjacent slice to help determine the external and internal markers for delineation of the lymphoma in that slice. The algorithm was applied to 29 lymphomas (size range, 9-53 mm in diameter; mean, 23 mm) in nine patients. A blinded radiologist manually delineated all lymphomas on all slices. The manual result served as the ''gold standard'' for comparison. Several quantitative methods were applied to objectively evaluate the performance of the segmentation algorithm. The algorithm received a mean overlap, overestimation, and underestimation ratios of 83.2%, 13.5%, and 5.5%, respectively. The mean average boundary distance and Hausdorff boundary distance were 0.7 and 3.7 mm. Preliminary results have shown the potential of this computer algorithm to allow reliable segmentation and quantification of lymphomas on sequential CT images

Marine corrosion of mild steel at Lumut, Perak

Science.gov (United States)

Ting, Ong Shiou; Potty, Narayanan Sambu; Liew, Mohd. Shahir

2012-09-01

The corrosion rate of structural steels in the adverse marine and offshore environments affects the economic interest of offshore structures since the loss of steel may have significant impact on structural safety and performance. With more emphasis to maintain existing structures in service for longer time and hence to defer replacement costs, there is increasing interest in predicting corrosion rate at a given location for a given period of exposure once the protection coating or cathodic protection is lost. The immersion depth, salinity, steel composition and water pollution will be taken into account. Various corrosion allowances are prescribed for structural members by different standards. There are no studies to determine the appropriate corrosion allowance for steel structures in marine environment in Malaysia. The objectives of the research are to determine the nature and rate of corrosion in mm/year for steel structures in marine environment. It also tries to identify whether the corrosion rate is affected by differences in the chemical composition of the steels, and microalgae. Two sets of corrosion coupons of Type 3 Steel consisting of mild steel were fabricated and immersed in seawater using steel frames. The corrosion rate of the coupon in mm/ per year is estimated based on the material weight loss with time in service. The results are compared with recommendations of the code.

Hopping hotspots: global shifts in marine biodiversity.

Science.gov (United States)

Renema, W; Bellwood, D R; Braga, J C; Bromfield, K; Hall, R; Johnson, K G; Lunt, P; Meyer, C P; McMonagle, L B; Morley, R J; O'Dea, A; Todd, J A; Wesselingh, F P; Wilson, M E J; Pandolfi, J M

2008-08-01

Hotspots of high species diversity are a prominent feature of modern global biodiversity patterns. Fossil and molecular evidence is starting to reveal the history of these hotspots. There have been at least three marine biodiversity hotspots during the past 50 million years. They have moved across almost half the globe, with their timing and locations coinciding with major tectonic events. The birth and death of successive hotspots highlights the link between environmental change and biodiversity patterns. The antiquity of the taxa in the modern Indo-Australian Archipelago hotspot emphasizes the role of pre-Pleistocene events in shaping modern diversity patterns.

Seashore marine table quiz

OpenAIRE

Institute, Marine

2013-01-01

Develop an increasing awareness of plants and animals that live in local marine environments including the seashore, seas and oceans of Ireland. After learning all about the seashore and other marine related lessons, this quiz can be used to evaluate the student’s knowledge of the marine related living things and natural environments. The table quiz can be used as a guide, highlighting facts about the marine environment and some of the animals that live there.

Google Earth Visualizations of the Marine Automatic Identification System (AIS): Monitoring Ship Traffic in National Marine Sanctuaries

Science.gov (United States)

Schwehr, K.; Hatch, L.; Thompson, M.; Wiley, D.

2007-12-01

The Automatic Identification System (AIS) is a new technology that provides ship position reports with location, time, and identity information without human intervention from ships carrying the transponders to any receiver listening to the broadcasts. In collaboration with the USCG's Research and Development Center, NOAA's Stellwagen Bank National Marine Sanctuary (SBNMS) has installed 3 AIS receivers around Massachusetts Bay to monitor ship traffic transiting the sanctuary and surrounding waters. The SBNMS and the USCG also worked together propose the shifting the shipping lanes (termed the traffic separation scheme; TSS) that transit the sanctuary slightly to the north to reduce the probability of ship strikes of whales that frequent the sanctuary. Following approval by the United Nation's International Maritime Organization, AIS provided a means for NOAA to assess changes in the distribution of shipping traffic caused by formal change in the TSS effective July 1, 2007. However, there was no easy way to visualize this type of time series data. We have created a software package called noaadata-py to process the AIS ship reports and produce KML files for viewing in Google Earth. Ship tracks can be shown changing over time to allow the viewer to feel the motion of traffic through the sanctuary. The ship tracks can also be gridded to create ship traffic density reports for specified periods of time. The density is displayed as map draped on the sea surface or as vertical histogram columns. Additional visualizations such as bathymetry images, S57 nautical charts, and USCG Marine Information for Safety and Law Enforcement (MISLE) can be combined with the ship traffic visualizations to give a more complete picture of the maritime environment. AIS traffic analyses have the potential to give managers throughout NOAA's National Marine Sanctuaries an improved ability to assess the impacts of ship traffic on the marine resources they seek to protect. Viewing ship traffic

Evaluating commercial marine emissions and their role in air quality policy using observations and the CMAQ model

Science.gov (United States)

Ring, Allison M.; Canty, Timothy P.; Anderson, Daniel C.; Vinciguerra, Timothy P.; He, Hao; Goldberg, Daniel L.; Ehrman, Sheryl H.; Dickerson, Russell R.; Salawitch, Ross J.

2018-01-01

We investigate the representation of emissions from the largest (Class 3) commercial marine vessels (c3 Marine) within the Community Multiscale Air Quality (CMAQ) model. In present emissions inventories developed by the United States Environmental Protection Agency (EPA), c3 Marine emissions are divided into off-shore and near-shore files. Off-shore c3 Marine emissions are vertically distributed within the atmospheric column, reflecting stack-height and plume rise. Near-shore c3 Marine emissions, located close to the US shoreline, are erroneously assumed to occur only at the surface. We adjust the near-shore c3 Marine emissions inventory by vertically distributing these emissions to be consistent with the off-shore c3 Marine inventory. Additionally, we remove near-shore c3 Marine emissions that overlap with off-shore c3 Marine emissions within the EPA files. The CMAQ model generally overestimates surface ozone (O3) compared to Air Quality System (AQS) site observations, with the largest discrepancies occurring near coastal waterways. We compare modeled O3 from two CMAQ simulations for June, July, and August (JJA) 2011 to surface O3 observations from AQS sites to examine the efficacy of the c3 Marine emissions improvements. Model results at AQS sites show average maximum 8-hr surface O3 decreases up to ∼6.5 ppb along the Chesapeake Bay, and increases ∼3-4 ppb around Long Island Sound, when the adjusted c3 Marine emissions are used. Along with the c3 Marine emissions adjustments, we reduce on-road mobile NOX emissions by 50%, motivated by work from Anderson et al. 2014, and reduce the lifetime of the alkyl nitrate species group from ∼10 days to ∼1 day based on work by Canty et al. 2015, to develop the ;c3 Science; model scenario. Simulations with these adjustments further improve model representation of the atmosphere. We calculate the ratio of column formaldehyde (HCHO) and tropospheric column nitrogen dioxide (NO2) using observations from the Ozone

Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria

DEFF Research Database (Denmark)

Farnelid, Hanna; Andersson, Anders F.; Bertilsson, Stefan

2011-01-01

analysis of 79,090 nitrogenase (nifH) PCR amplicons encoding 7,468 unique proteins from surface samples (ten DNA samples and two RNA samples) collected at ten marine locations world-wide provides the first in-depth survey of a functional bacterial gene and yield insights into the composition and diversity...... by unicellular cyanobacteria, 42% of the identified non-cyanobacterial nifH clusters from the corresponding DNA samples were also detected in cDNA. The study indicates that non-cyanobacteria account for a substantial part of the nifH gene pool in marine surface waters and that these genes are at least...

Marine Jurisdiction Boundaries

Data.gov (United States)

Department of Homeland Security — The NOAA Coastal Services Center's Marine Jurisdiction dataset was created to assist in marine spatial planning and offshore alternative energy sitting. This is a...

Detection of leaks for radioactive tracer in marine duct for transport of liquefied petroleum gas

International Nuclear Information System (INIS)

Robles P, E. F.; Benitez S, J. A.; Torre O, J. de la; Cruz S, E. de la; Molina, G.; Hernandez C, J. E.; Flores M, J. . e mail: efrp@nuclear.inin.mx

2008-01-01

In this work the aplication in the oil industry of the technique of radioactive tracer appears for the detection of internal leaks in a submarine duct that gives service as it lines of receipt of liquefied petroleum gas (Gas LP) located in the Mexican coast of the Pacific Ocean. This system of marine pipe is a consistent arrangement of a duct interior of 0.254 m (10 inches) of nominal diameter (N.D.) of steel to the carbon for cryogenic service ASTM A 333, Grade 6, schedule 30, isolated thermally with foam of polyurethane and shielding in a steel tube to the carbon ASTM A 53 Grade A, of 0.508 m (20 inches) N. D., schedule 20, which is recovered by a ballast encircling of concrete of 0.0508 m (2 inches) of thickness, reinforced with mesh metallic, and that 1315 m runs on the marine stratum to a maximum depth of 12.5 m. For the detection of leaks by radiotracer it was used as tracer the radioactive isotope La-140 produced in the TRIGA Mark III Experimental Reactor of the National Institute of Nuclear Research, starting from stable lanthanum nitrate (La(NO 3 ) 3 6H 2 O), with an activity of 100 mCi, the one which after having been made logistics tasks, given very particular sea maneuvers and due to the conditions of the work place, in the interior tube was injected in two subsequent stages to cover both duct senses; from earth and from the marine end respectively, there being used fresh water like transport way and submergible sodium iodide detectors (NaI) for the rake of the La-140. At the end of the journeys of pursuit of the radiotracer, it was determine the presence of three leaks points located in the break area of the marine surf to 360 m, 450 m and 495 m of distance of a reference point located in the beach section named Trap of Devils. (Author)

Segmental distribution of some common molecular markers for colorectal cancer (CRC): influencing factors and potential implications.

Science.gov (United States)

Papagiorgis, Petros Christakis

2016-05-01

Proximal and distal colorectal cancers (CRCs) are regarded as distinct disease entities, evolving through different genetic pathways and showing multiple clinicopathological and molecular differences. Segmental distribution of some common markers (e.g., KRAS, EGFR, Ki-67, Bcl-2, COX-2) is clinically important, potentially affecting their prognostic or predictive value. However, this distribution is influenced by a variety of factors such as the anatomical overlap of tumorigenic molecular events, associations of some markers with other clinicopathological features (stage and/or grade), and wide methodological variability in markers' assessment. All these factors represent principal influences followed by intratumoral heterogeneity and geographic variation in the frequency of detection of particular markers, whereas the role of other potential influences (e.g., pre-adjuvant treatment, interaction between markers) remains rather unclear. Better understanding and elucidation of the various influences may provide a more accurate picture of the segmental distribution of molecular markers in CRC, potentially allowing the application of a novel patient stratification for treatment, based on particular molecular profiles in combination with tumor location.

75 FR 68605 - Marine Mammals

Science.gov (United States)

2010-11-08

...-XX23 Marine Mammals AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... permit to conduct research on marine mammals. ADDRESSES: The permit and related documents are available... applicant. The requested permit has been issued under the authority of the Marine Mammal Protection Act of...

77 FR 2512 - Marine Mammals

Science.gov (United States)

2012-01-18

...-XA905 Marine Mammals AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... Dorian Houser, Ph.D., National Marine Mammal Foundation, 2240 Shelter Island Drive, 200, San Diego, CA... subject permit is requested under the authority of the Marine Mammal Protection Act of 1972, as amended...

Comparison of the Distribution of Unsaturated Fatty Acids at the Sn-2 Position of Phospholipids and Triacylglycerols in Marine Fishes and Mammals.

Science.gov (United States)

Beppu, Fumiaki; Yasuda, Keiko; Okada, Ayako; Hirosaki, Yoshitsugu; Okazaki, Masako; Gotoh, Naohiro

2017-11-01

Highly unsaturated fatty acid (HUFA) binding at the sn-2 position of phospholipids (PL) becomes a resource for prostaglandin, leukotriene, resolvin, and protectin synthesis. Both triacylglycerol (TAG) and PL synthesis pathways in vivo are via phosphatidic acid; therefore, the distribution of fatty acid species at the sn-2 position must theoretically be the same for TAG and PL if rearrangement does not occur. However, it is known that little HUFA is located at the sn-2 position of TAG in marine mammals. Therefore, distribution of fatty acid species at the sn-2 position of TAG and PL was compared between marine fishes and mammals in this study. The composition of fatty acids binding at the sn-2 or sn-1,3 position of PL and TAG was analyzed via hydrolysis with enzymes and GC-FID. The results showed that 20:4n-6, 20:5n-3, 22:5n-3, and 22:6n-3 were primarily located at the sn-1,3 positions of TAG in marine mammals. Comparison of the binding positions of HUFA and 16:0 in PL and TAG suggested the existence of Lands' cycle in marine fishes and mammals. In conclusion, both marine fishes and mammals condensed HUFA as a source of eicosanoid at the sn-2 position of PL. Furthermore, abundance ratios for 22:5n-3 or 22:6n-3 at the sn-2 position (sn-2 ratio) in TAG and PL (calculated by the equation: [abundance ratio at sn-2 position of TAG]/[abundance ratio at sn-2 position of PL]) was less than 0.35 in marine mammals; however, it was greater than 0.80 in marine fishes. These differences suggested that the HUFA consisted of 22 carbon atoms and had different roles in marine fishes and mammals.

Lipid and other plasma markers are associated with anxiety, depression, and fatigue.

Science.gov (United States)

Lieberman, Harris R; Kellogg, Mark D; Kramer, F Matthew; Bathalon, Gaston P; Lesher, Larry L

2012-03-01

Few peripheral metabolites have been shown to be associated with mood in healthy individuals or patients with central nervous system diseases. During military basic combat training (BCT), mood state, physical performance and body composition substantially improve, providing an opportunity to examine relationships between mood and nutritional and hormonal biomarkers. Thirty-five females enrolled in U.S. Marine BCT, an intense physically and mentally challenging 12-week course, were studied. Every 4 weeks, mood was assessed with the Profile of Mood States (POMS), as were nutritional, metabolic and hormonal plasma markers. Mood and fitness improved over BCT, and there were substantial changes in biochemical markers. Multiple regression demonstrated that, in combination, cholesterol (HDL, LDL), fructosamine, triglycerides, free fatty acids (FFA), dehydroepiandrosterone-sulfate (DHEA-S), ACTH, and substance P accounted for 44% of variation in anxiety, 40% confusion, 37% fatigue, 27% depression and 40% in total mood (p cardiovascular status, were associated with negative affect. Fructosamine and substance P, not previously known to be related to mood, were associated with it. We are not aware of any biological parameters that in aggregate predict such a substantial proportion of variation in normal mood.

Dating of the middle Palaeolithic site of Payre (Ardeche): new radiometric data (U-series and ESR methods)

International Nuclear Information System (INIS)

Masaoudi, H.; Falgueres, Ch.; Bahain, J.J.; Moncel, M.H.

1997-01-01

The site of Payre is located in Ardeche. Several archaeological layers containing lithic artefacts of Middle Palaeolithic were found. These artefacts lie associated with carbonate formations which are good chronostratigraphic markers. The U-series and ESR methods on bones and stalagmitic floors placed the human occupation between isotopic marine stages 7 and 4. (authors)

77 FR 17033 - Taking and Importing Marine Mammals: Taking Marine Mammals Incidental to Navy's Training...

Science.gov (United States)

2012-03-23

... take marine mammals by harassment incidental to its training activities at the Gulf of Mexico (GOMEX... Importing Marine Mammals: Taking Marine Mammals Incidental to Navy's Training Activities at the Gulf of Mexico Range Complex AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric...

Assessing marine biotechnology research centres in peripheral regions: developing global and local STI indicators

Energy Technology Data Exchange (ETDEWEB)

Robinson, D.K.R.; Schoen, A.; Laurens, P.; Horellou, S.; Colas, P.; Larédo, P.

2016-07-01

Our study tackles the challenge of developing STI indicators for assessing marine biotechnology (Blue Bio) research institutes that are geographically located in peripheral regions, far from major metropolitan areas. The promise of Blue Bio couples (a) the promise of new sources of knowledge and innovation with (b) the promise to stimulate jobs and growth in regions which struggle to prosper due to a number of factors (such as economic migration from peripheries to large cities, decline of traditional coastal economic activity etc.). In this paper we outline the context of Marine Biotechnology assessment, the framework that is being used, and the first results of its application. (Author)

Genomic markers for decision making: what is preventing us from using markers?

Science.gov (United States)

Coyle, Vicky M; Johnston, Patrick G

2010-02-01

The advent of novel genomic technologies that enable the evaluation of genomic alterations on a genome-wide scale has significantly altered the field of genomic marker research in solid tumors. Researchers have moved away from the traditional model of identifying a particular genomic alteration and evaluating the association between this finding and a clinical outcome measure to a new approach involving the identification and measurement of multiple genomic markers simultaneously within clinical studies. This in turn has presented additional challenges in considering the use of genomic markers in oncology, such as clinical study design, reproducibility and interpretation and reporting of results. This Review will explore these challenges, focusing on microarray-based gene-expression profiling, and highlights some common failings in study design that have impacted on the use of putative genomic markers in the clinic. Despite these rapid technological advances there is still a paucity of genomic markers in routine clinical use at present. A rational and focused approach to the evaluation and validation of genomic markers is needed, whereby analytically validated markers are investigated in clinical studies that are adequately powered and have pre-defined patient populations and study endpoints. Furthermore, novel adaptive clinical trial designs, incorporating putative genomic markers into prospective clinical trials, will enable the evaluation of these markers in a rigorous and timely fashion. Such approaches have the potential to facilitate the implementation of such markers into routine clinical practice and consequently enable the rational and tailored use of cancer therapies for individual patients.

Predicting Human Mobility Patterns in Marine Ecosystems: Entropy and Home Range Calculations Based on High-Resolution Fishing Vessel Tracking Data

Science.gov (United States)

Murawski, S. A.

2016-02-01

A number of recent studies have developed metrics of human mobility patterns based on georeferenced cell phone records. The studies generally indicate a high degree of predictability in human location and relatively narrow home ranges for most people. In marine ecosystems there are a number of important uses for such calculations including marine spatial planning and predicting the impacts of marine management options such as establishing marine protected areas (MPAs). In this study we use individual fishing vessel satellite tracking (VMS) records ( 30 million records) obtained from commercial reef fish fishing vessels in the Gulf of Mexico during 2006-2014. This period witnessed the establishment of a variety of new regulations including individual fishing quotas (IFQs) for snapper, grouper, and tilefish, establishment of spatial-area closures, and the temporary closure of as much as 85,000 nautical miles of productive fishing grounds associated with the Deepwater Horizon oil spill accident. Vessel positions were obtained, with a location frequency of one hour. From these VMS data we calculated three measures of entropy (degree of repeatability in spatial use), as well as calculated the axis of gyration (home range) for each vessel in the data set. These calculations were related to a variety of descriptor variables including vessel size, distance from home port to predominant fishing grounds, revenue generated on fishing trips, and fishing regulations. The applicability of these calculations to marine resource management applications is discussed.

Development and genetic mapping of SSR markers in foxtail millet [Setaria italica (L.) P. Beauv.].

Science.gov (United States)

Jia, Xiaoping; Zhang, Zhongbao; Liu, Yinghui; Zhang, Chengwei; Shi, Yunsu; Song, Yanchun; Wang, Tianyu; Li, Yu

2009-02-01

SSR markers are desirable markers in analysis of genetic diversity, quantitative trait loci mapping and gene locating. In this study, SSR markers were developed from two genomic libraries enriched for (GA)n and (CA)n of foxtail millet [Setaria italica (L.) P. Beauv.], a crop of historical importance in China. A total of 100 SSR markers among the 193 primer pairs detected polymorphism between two mapping parents of an F(2) population, i.e. "B100" of cultivated S. italica and "A10" of wild S. viridis. Excluding 14 markers with unclear amplifications, and five markers unlinked with any linkage group, a foxtail millet SSR linkage map was constructed by integrating 81 new developed SSR markers with 20 RFLP anchored markers. The 81 SSRs covered nine chromosomes of foxtail millet. The length of the map was 1,654 cM, with an average interval distance between markers of 16.4 cM. The 81 SSR markers were not evenly distributed throughout the nine chromosomes, with Ch.8 harbouring the least (3 markers) and Ch.9 harbouring the most (18 markers). To verify the usefulness of the SSR markers developed, 37 SSR markers were randomly chosen to analyze genetic diversity of 40 foxtail millet accessions. Totally 228 alleles were detected, with an average 6.16 alleles per locus. Polymorphism information content (PIC) value for each locus ranged from 0.413 to 0.847, with an average of 0.697. A positive correlation between PIC and number of alleles and between PIC and number of repeat unit were found [0.802 and 0.429, respectively (P < 0.01)]. UPGMA analysis revealed that the 40 foxtail millet cultivars could be grouped into five clusters in which the landraces' grouping was largely consistent with ecotypes while the breeding varieties from different provinces in China tended to be grouped together.

Marine biodiversity and fishery sustainability.

Science.gov (United States)

Shao, Kwang-Tsao

2009-01-01

Marine fish is one of the most important sources of animal protein for human use, especially in developing countries with coastlines. Marine fishery is also an important industry in many countries. Fifty years ago, many people believed that the ocean was so vast and so resilient that there was no way the marine environment could be changed, nor could marine fishery resources be depleted. Half a century later, we all agree that the depletion of fishery resources is happening mainly due to anthropogenic factors such as overfishing, habitat destruction, pollution, invasive species introduction, and climate change. Since overfishing can cause chain reactions that decrease marine biodiversity drastically, there will be no seafood left after 40 years if we take no action. The most effective ways to reverse this downward trend and restore fishery resources are to promote fishery conservation, establish marine-protected areas, adopt ecosystem-based management, and implement a "precautionary principle." Additionally, enhancing public awareness of marine conservation, which includes eco-labeling, fishery ban or enclosure, slow fishing, and MPA (marine protected areas) enforcement is important and effective. In this paper, we use Taiwan as an example to discuss the problems facing marine biodiversity and sustainable fisheries.

Conformal radiotherapy for prostate cancer: contribution of pelvic immobilization and new fiducial markers

International Nuclear Information System (INIS)

Garcia, R.; Oozeer, R.; Le Thanh, H.; Chauvet, B.; Toy, B.J.; Reboul, F.

1997-01-01

To reduce errors in the positioning of patients treated with external conformal radiotherapy for prostate cancer, we evaluated both the use of an immobilization device and new fiducial markers. The immobilization device consisted of an individual mold made of polyurethane foam. Two sets of skin markers located on the anterior tibial surfaces were used to identify the pelvic isocenter. The patient's position was evaluated by orthogonal port film which were then compared with the original simulation film. Results are presented with respect to orthogonal axes. Comparison with classic procedures without immobilization showed that use of the mold and new fiducial markers led to a decrease in set-up errors which were less than 5 mm. With the use of an immobilization device and optimized techniques for patients' positioning, conformal radiotherapy of prostate cancer is more accurate. (authors)

Marine electrical practice

CERN Document Server

Watson, G O

1991-01-01

Marine Engineering Series: Marine Electrical Practice, Sixth Edition focuses on changes in the marine industry, including the application of programmable electronic systems, generators, and motors. The publication first ponders on insulation and temperature ratings of equipment, protection and discrimination, and AC generators. Discussions focus on construction, shaft-drive generators, effect of unbalanced loading, subtransient and transient reactance, protection discrimination, fault current, measurement of ambient air temperature, and basis of machine ratings. The text then examines AC switc

Mariners Weather Log

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Mariners Weather Log (MWL) is a publication containing articles, news and information about marine weather events and phenomena, worldwide environmental impact...

Marker-trait association analysis of frost tolerance of 672 worldwide pea (Pisum sativum L.) collections.

Science.gov (United States)

Liu, Rong; Fang, Li; Yang, Tao; Zhang, Xiaoyan; Hu, Jinguo; Zhang, Hongyan; Han, Wenliang; Hua, Zeke; Hao, Junjie; Zong, Xuxiao

2017-07-19

Frost stress is one of the major abiotic stresses causing seedling death and yield reduction in winter pea. To improve the frost tolerance of pea, field evaluation of frost tolerance was conducted on 672 diverse pea accessions at three locations in Northern China in three growing seasons from 2013 to 2016 and marker-trait association analysis of frost tolerance were performed with 267 informative SSR markers in this study. Sixteen accessions were identified as the most winter-hardy for their ability to survive in all nine field experiments with a mean survival rate of 0.57, ranging from 0.41 to 0.75. Population structure analysis revealed a structured population of two sub-populations plus some admixtures in the 672 accessions. Association analysis detected seven markers that repeatedly had associations with frost tolerance in at least two different environments with two different statistical models. One of the markers is the functional marker EST1109 on LG VI which was predicted to co-localize with a gene involved in the metabolism of glycoproteins in response to chilling stress and may provide a novel mechanism of frost tolerance in pea. These winter-hardy germplasms and frost tolerance associated markers will play a vital role in marker-assisted breeding for winter-hardy pea cultivar.

Protection enhances community and habitat stability: evidence from a mediterranean marine protected area.

Science.gov (United States)

Fraschetti, Simonetta; Guarnieri, Giuseppe; Bevilacqua, Stanislao; Terlizzi, Antonio; Boero, Ferdinando

2013-01-01

Rare evidences support that Marine Protected Areas (MPAs) enhance the stability of marine habitats and assemblages. Based on nine years of observation (2001-2009) inside and outside a well managed MPA, we assessed the potential of conservation and management actions to modify patterns of spatial and/or temporal variability of Posidonia oceanica meadows, the lower midlittoral and the shallow infralittoral rock assemblages. Significant differences in both temporal variations and spatial patterns were observed between protected and unprotected locations. A lower temporal variability in the protected vs. unprotected assemblages was found in the shallow infralittoral, demonstrating that, at least at local scale, protection can enhance community stability. Macrobenthos with long-lived and relatively slow-growing invertebrates and structurally complex algal forms were homogeneously distributed in space and went through little fluctuations in time. In contrast, a mosaic of disturbed patches featured unprotected locations, with small-scale shifts from macroalgal stands to barrens, and harsh temporal variations between the two states. Opposite patterns of spatial and temporal variability were found for the midlittoral assemblages. Despite an overall clear pattern of seagrass regression through time, protected meadows showed a significantly higher shoot density than unprotected ones, suggesting a higher resistance to local human activities. Our results support the assumption that the exclusion/management of human activities within MPAs enhance the stability of the structural components of protected marine systems, reverting or arresting threat-induced trajectories of change.

76 FR 76949 - Marine Mammals

Science.gov (United States)

2011-12-09

...-XR52 Marine Mammals AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric.... 14534 is requested under the authority of the Marine Mammal Protection Act of 1972, as amended (16 U.S.C. 1361 et seq.), the regulations governing the taking and importing of marine mammals (50 CFR part 216...

77 FR 14352 - Marine Mammals

Science.gov (United States)

2012-03-09

...-XB065 Marine Mammals AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... Marine Mammal Protection Act of 1972, as amended (16 U.S.C. 1361 et seq.), the regulations governing the taking and importing of marine mammals (50 CFR part 216), the Endangered Species Act of 1973, as amended...

75 FR 77616 - Marine Mammals

Science.gov (United States)

2010-12-13

.... 14334] Marine Mammals AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... Marine Mammal Protection Act of 1972, as amended (16 U.S.C. 1361 et seq.), the regulations governing the taking and importing of marine mammals (50 CFR part 216), the Endangered Species Act of 1973, as amended...

Global Distribution of Human-Associated Fecal Genetic Markers in Reference Samples from Six Continents.

Science.gov (United States)

Mayer, René E; Reischer, Georg H; Ixenmaier, Simone K; Derx, Julia; Blaschke, Alfred Paul; Ebdon, James E; Linke, Rita; Egle, Lukas; Ahmed, Warish; Blanch, Anicet R; Byamukama, Denis; Savill, Marion; Mushi, Douglas; Cristóbal, Héctor A; Edge, Thomas A; Schade, Margit A; Aslan, Asli; Brooks, Yolanda M; Sommer, Regina; Masago, Yoshifumi; Sato, Maria I; Taylor, Huw D; Rose, Joan B; Wuertz, Stefan; Shanks, Orin C; Piringer, Harald; Mach, Robert L; Savio, Domenico; Zessner, Matthias; Farnleitner, Andreas H

2018-05-01

Numerous bacterial genetic markers are available for the molecular detection of human sources of fecal pollution in environmental waters. However, widespread application is hindered by a lack of knowledge regarding geographical stability, limiting implementation to a small number of well-characterized regions. This study investigates the geographic distribution of five human-associated genetic markers (HF183/BFDrev, HF183/BacR287, BacHum-UCD, BacH, and Lachno2) in municipal wastewaters (raw and treated) from 29 urban and rural wastewater treatment plants (750-4 400 000 population equivalents) from 13 countries spanning six continents. In addition, genetic markers were tested against 280 human and nonhuman fecal samples from domesticated, agricultural and wild animal sources. Findings revealed that all genetic markers are present in consistently high concentrations in raw (median log 10 7.2-8.0 marker equivalents (ME) 100 mL -1 ) and biologically treated wastewater samples (median log 10 4.6-6.0 ME 100 mL -1 ) regardless of location and population. The false positive rates of the various markers in nonhuman fecal samples ranged from 5% to 47%. Results suggest that several genetic markers have considerable potential for measuring human-associated contamination in polluted environmental waters. This will be helpful in water quality monitoring, pollution modeling and health risk assessment (as demonstrated by QMRAcatch) to guide target-oriented water safety management across the globe.

CmMDb: a versatile database for Cucumis melo microsatellite markers and other horticulture crop research.

Science.gov (United States)

Bhawna; Chaduvula, Pavan K; Bonthala, Venkata S; Manjusha, Verma; Siddiq, Ebrahimali A; Polumetla, Ananda K; Prasad, Gajula M N V

2015-01-01

Cucumis melo L. that belongs to Cucurbitaceae family ranks among one of the highest valued horticulture crops being cultivated across the globe. Besides its economical and medicinal importance, Cucumis melo L. is a valuable resource and model system for the evolutionary studies of cucurbit family. However, very limited numbers of molecular markers were reported for Cucumis melo L. so far that limits the pace of functional genomic research in melon and other similar horticulture crops. We developed the first whole genome based microsatellite DNA marker database of Cucumis melo L. and comprehensive web resource that aids in variety identification and physical mapping of Cucurbitaceae family. The Cucumis melo L. microsatellite database (CmMDb: http://65.181.125.102/cmmdb2/index.html) encompasses 39,072 SSR markers along with its motif repeat, motif length, motif sequence, marker ID, motif type and chromosomal locations. The database is featured with novel automated primer designing facility to meet the needs of wet lab researchers. CmMDb is a freely available web resource that facilitates the researchers to select the most appropriate markers for marker-assisted selection in melons and to improve breeding strategies.

MarineCadastre.gov

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — MarineCadastre.gov is a marine information system that provides authoritative ocean data, offshore planning tools, and technical support to the offshore renewable...

Marine actinobacteria associated with marine organisms and their potentials in producing pharmaceutical natural products.

Science.gov (United States)

Valliappan, Karuppiah; Sun, Wei; Li, Zhiyong

2014-09-01

Actinobacteria are ubiquitous in the marine environment, playing an important ecological role in the recycling of refractory biomaterials and producing novel natural products with pharmic applications. Actinobacteria have been detected or isolated from the marine creatures such as sponges, corals, mollusks, ascidians, seaweeds, and seagrass. Marine organism-associated actinobacterial 16S rRNA gene sequences, i.e., 3,003 sequences, deposited in the NCBI database clearly revealed enormous numbers of actinobacteria associated with marine organisms. For example, RDP classification of these sequences showed that 112 and 62 actinobacterial genera were associated with the sponges and corals, respectively. In most cases, it is expected that these actinobacteria protect the host against pathogens by producing bioactive compounds. Natural products investigation and functional gene screening of the actinobacteria associated with the marine organisms revealed that they can synthesize numerous natural products including polyketides, isoprenoids, phenazines, peptides, indolocarbazoles, sterols, and others. These compounds showed anticancer, antimicrobial, antiparasitic, neurological, antioxidant, and anti-HIV activities. Therefore, marine organism-associated actinobacteria represent an important resource for marine drugs. It is an upcoming field of research to search for novel actinobacteria and pharmaceutical natural products from actinobacteria associated with the marine organisms. In this review, we attempt to summarize the present knowledge on the diversity and natural products production of actinobacteria associated with the marine organisms, based on the publications from 1991 to 2013.

Uplift rates of the marine terraces in the south coast of Japan deduced from in situ cosmogenic 10Be and 26Al

Science.gov (United States)

Yokoyama, Y.; Nagano, G.; Nakamura, A.; Maemoku, H.; Miyairi, Y.; Matsuzaki, H.

2015-12-01

Marine terraces are low-relief platforms located along coastal areas. They are formed by waves action with the changes in the relative sea level (RSL) that is affected by combined effects of the eustatic sea level (ESL) and the tectonic movements (e.g. uplift, subsidence and isostatic effect). Therefore, determining the ages and the elevations of the marine terraces allows us to reconstruct the ESL and/or the tectonic history of the study area. The Kii Peninsula and the southern coast of the Shikoku Island are located along the Nankai Trough where the Philippine Sea Plate is subducting under the Eurasian plate. There exist relatively well-preserved marine terraces along the coastal line with the elevation of ca. 50 -100 m. Because of this unique tectonic setting, the terraces are regarded as the suitable counterparts to reconstruct uplift history of the south coast of Japan. However, the ages of these terraces are poorly understood due to the lack of the ash layers that is suitable for the tephrochronology. In this study, we determine the age of the marine terraces using terrestrial in-situ cosmogenic radionuclides (TCN), 10Be and 26Al. This is the first age estimation of the marine terraces in Japan using TCN, allowing us to determine the uplift rates and the seismic history of the region.

76 FR 41463 - Takes of Marine Mammals Incidental to Specified Activities; Taking Marine Mammals Incidental to a...

Science.gov (United States)

2011-07-14

... requirements, many marine animals may need to remain in areas where they are exposed to chronic stimuli... Marine Mammals Incidental to Specified Activities; Taking Marine Mammals Incidental to a Marine... Atmospheric Administration (NOAA), National Marine Fisheries Service (NMFS). ACTION: Notice; proposed...

[Analysis on sustainable development of marine economy in Jiangsu Province based on marine ecological footprint correction model].

Science.gov (United States)

Yang, Shan; Wang, Yu-ting

2011-03-01

Based on the theories and methods of ecological footprint, the concept of marine ecological footprint was proposed. According to the characteristics of marine environment in Jiangsu Province, five sub-models of marine ecological footprints, including fishery, transporation, marine engineering construction, marine energy, and tidal flat, were constructed. The equilibrium factors of the five marine types were determined by using improved entropy method, and the marine footprints and capacities in Jiangsu Province from 2000 to 2008 were calculated and analyzed. In 2000-2008, the marine ecology footprint per capita in Jiangsu Province increased nearly seven times, from 36.90 hm2 to 252.94 hm2, and the ecological capacity per capita grew steadily, from 105.01 hm2 to 185.49 hm2. In 2000, the marine environment in the Province was in a state of ecological surplus, and the marine economy was in a weak sustainable development state. Since 2004, the marine ecological environment deteriorated sharply, with ecological deficit up to 109660.5 hm2, and the sustainability of marine economy declined. The high ecological footprint of fishery was the main reason for the ecological deficit. Tidal flat was the important reserve resource for the sustainable development of marine economy in Jiangsu Province.

Marine Education Knowledge Inventory.

Science.gov (United States)

Hounshell, Paul B.; Hampton, Carolyn

This 35-item, multiple-choice Marine Education Knowledge Inventory was developed for use in upper elementary/middle schools to measure a student's knowledge of marine science. Content of test items is drawn from oceanography, ecology, earth science, navigation, and the biological sciences (focusing on marine animals). Steps in the construction of…

Factors controlling the compositional variations among the marine and non-marine black shales from Egypt

Energy Technology Data Exchange (ETDEWEB)

Baioumy, Hassan M. [Central Metallurgical R and D Institute, PO Box 87 Helwan, Cairo (Egypt); Ismael, Ismael S. [Faculty of Science, Suez Canal University, Suez (Egypt)

2010-07-01

Non-marine (Jurassic) and marine (Cretaceous) black shales from Egypt were subjected to mineralogical and geochemical analyses to examine the controlling factors of their compositional variations. Non-marine black shales are composed of kaolinite and quartz with traces of gypsum, illite, calcite, feldspars, and dolomite, while marine black shales from the Red Sea area are composed of smectite, kaolinite, quartz, calcite, and dolomite with traces of feldspars. Abu Tartur marine black shales are composed of smectite and quartz with traces of feldspars and gypsum. Non-marine black shales show considerably higher Nb, Ta, Hf, and Zr contents and Th/Yb ratios compared to the marine black shales. On the other hand, marine black shales show considerably higher Cr, V, and Zn contents with positive correlations between these elements and organic carbon (C{sub org.}){sub .} Red Sea black shales have higher Ni/Co, V/Cr, and U/Al ratios. Chondrite normalized values of the medium and heavy rare earth elements (MREEs and HREEs, respectively) are higher in the non-marine black shales compared to the marine black shales. Pyrite from non-marine black shales is characterized by high positive {delta}{sup 34}S isotope values (average of + 9.3 permille). Pyrite from Red Sea black shales has low negative {delta}{sup 34}S values (average of -16.7 permille), pyrite from black shales of the lower member of the Duwi Formation has positive {delta}{sup 34}S values (average of 5.8 permille), while pyrite from marine black shales of the middle member has negative {delta}{sup 34}S values (average of -0.83 permille). Source area composition, weathering conditions, depositional environments, and type of organic matter are considered to be the probable controlling factors of these variations. The more felsic constituents in the source area of non-marine black shales is responsible for the relatively high Nb, Ta, Hf, and Zr contents and Th/Yb ratio. Relatively high kaolinite contents and Chemical

Marine mammal distribution in the open ocean: a comparison of ocean color data products and levant time scales

Science.gov (United States)

Ohern, J.

2016-02-01

Marine mammals are generally located in areas of enhanced surface primary productivity, though they may forage much deeper within the water column and higher on the food chain. Numerous studies over the past several decades have utilized ocean color data from remote sensing instruments (CZCS, MODIS, and others) to asses both the quantity and time scales over which surface primary productivity relates to marine mammal distribution. In areas of sustained upwelling, primary productivity may essentially grow in the secondary levels of productivity (the zooplankton and nektonic species on which marine mammals forage). However, in many open ocean habitats a simple trophic cascade does not explain relatively short time lags between enhanced surface productivity and marine mammal presence. Other dynamic features that entrain prey or attract marine mammals may be responsible for the correlations between marine mammals and ocean color. In order to investigate these features, two MODIS (moderate imaging spectroradiometer) data products, the concentration as well as the standard deviation of surface chlorophyll were used in conjunction with marine mammal sightings collected within Ecuadorian waters. Time lags between enhanced surface chlorophyll and marine mammal presence were on the order of 2-4 weeks, however correlations were much stronger when the standard deviation of spatially binned images was used, rather than the chlorophyll concentrations. Time lags also varied between Balaenopterid and Odontocete cetaceans. Overall, the standard deviation of surface chlorophyll proved a useful tool for assessing potential relationships between marine mammal sightings and surface chlorophyll.

78 FR 30870 - Nomination of Existing Marine Protected Areas to the National System of Marine Protected Areas

Science.gov (United States)

2013-05-23

... Marine Protected Areas to the National System of Marine Protected Areas AGENCY: National Marine Protected...) invited federal, state, commonwealth, and territorial marine protected area (MPA) programs with... of Marine Protected Areas of the United States (Framework), developed in response to Executive Order...

Plastics in the Marine Environment.

Science.gov (United States)

Law, Kara Lavender

2017-01-03

Plastics contamination in the marine environment was first reported nearly 50 years ago, less than two decades after the rise of commercial plastics production, when less than 50 million metric tons were produced per year. In 2014, global plastics production surpassed 300 million metric tons per year. Plastic debris has been detected worldwide in all major marine habitats, in sizes from microns to meters. In response, concerns about risks to marine wildlife upon exposure to the varied forms of plastic debris have increased, stimulating new research into the extent and consequences of plastics contamination in the marine environment. Here, I present a framework to evaluate the current understanding of the sources, distribution, fate, and impacts of marine plastics. Despite remaining knowledge gaps in mass budgeting and challenges in investigating ecological impacts, the increasing evidence of the ubiquity of plastics contamination in the marine environment, the continued rapid growth in plastics production, and the evidence-albeit limited-of demonstrated impacts to marine wildlife support immediate implementation of source-reducing measures to decrease the potential risks of plastics in the marine ecosystem.

Plastics in the Marine Environment

Science.gov (United States)

Law, Kara Lavender

2017-01-01

Plastics contamination in the marine environment was first reported nearly 50 years ago, less than two decades after the rise of commercial plastics production, when less than 50 million metric tons were produced per year. In 2014, global plastics production surpassed 300 million metric tons per year. Plastic debris has been detected worldwide in all major marine habitats, in sizes from microns to meters. In response, concerns about risks to marine wildlife upon exposure to the varied forms of plastic debris have increased, stimulating new research into the extent and consequences of plastics contamination in the marine environment. Here, I present a framework to evaluate the current understanding of the sources, distribution, fate, and impacts of marine plastics. Despite remaining knowledge gaps in mass budgeting and challenges in investigating ecological impacts, the increasing evidence of the ubiquity of plastics contamination in the marine environment, the continued rapid growth in plastics production, and the evidence—albeit limited—of demonstrated impacts to marine wildlife support immediate implementation of source-reducing measures to decrease the potential risks of plastics in the marine ecosystem.

Biosurfactants from marine microorganisms

Directory of Open Access Journals (Sweden)

Suppasil Maneerat

2005-11-01

Full Text Available Biosurfactants are the surface-active molecules synthesized by microorganisms. With the advantage of environmental compatibility, the demand for biosurfactants has been steadily increasing and may eventually replace their chemically synthesized counterparts. Marine biosurfactants produced by some marine microorganisms have been paid more attention, particularly for the bioremediation of the sea polluted by crude oil. This review describes screening of biosurfactant-producing microorganisms, the determination of biosurfactant activity as well as the recovery of marine surfactant. The uses of marine biosurfactants for bioremediation are also discussed.

A novel Sarcocystis neurona genotype XIII is associated with severe encephalitis in an unexpectedly broad range of marine mammals from the northeastern Pacific Ocean.

Science.gov (United States)

Barbosa, Lorraine; Johnson, Christine K; Lambourn, Dyanna M; Gibson, Amanda K; Haman, Katherine H; Huggins, Jessica L; Sweeny, Amy R; Sundar, Natarajan; Raverty, Stephen A; Grigg, Michael E

2015-08-01

Sarcocystis neurona is an important cause of protozoal encephalitis among marine mammals in the northeastern Pacific Ocean. To characterise the genetic type of S. neurona in this region, samples from 227 stranded marine mammals, most with clinical or pathological evidence of protozoal disease, were tested for the presence of coccidian parasites using a nested PCR assay. The frequency of S. neurona infection was 60% (136/227) among pinnipeds and cetaceans, including seven marine mammal species not previously known to be susceptible to infection by this parasite. Eight S. neurona fetal infections identified this coccidian parasite as capable of being transmitted transplacentally. Thirty-seven S. neurona-positive samples were multilocus sequence genotyped using three genetic markers: SnSAG1-5-6, SnSAG3 and SnSAG4. A novel genotype, referred to as Type XIII within the S. neurona population genetic structure, has emerged recently in the northeastern Pacific Ocean and is significantly associated with an increased severity of protozoal encephalitis and mortality among multiple stranded marine mammal species. Published by Elsevier Ltd.

75 FR 54095 - Takes of Marine Mammals Incidental to Specified Activities; Low-Energy Marine Seismic Survey in...

Science.gov (United States)

2010-09-03

... Marine Mammals Incidental to Specified Activities; Low- Energy Marine Seismic Survey in the Eastern... low-energy marine seismic survey. Pursuant to the Marine Mammal Protection Act (MMPA), NMFS is... funding provided by the National Science Foundation, a low-energy marine seismic survey. NMFS reviewed SIO...

Linking Marine Ecosystem Services to the North Sea’s Energy Fields in Transnational Marine Spatial Planning

Directory of Open Access Journals (Sweden)

Christina Vogel

2018-06-01

Full Text Available Marine spatial planning temporally and spatially allocates marine resources to different users. The ecosystem approach aims at optimising the social and economic benefits people derive from marine resources while preserving the ecosystem’s health. Marine ecosystem services are defined as the benefits people obtain from marine ecosystems. The aim of this study is to determine which interrelations between marine ecosystem services and the marine energy industry can be identified for use in transnational marine spatial planning exemplified in the North Sea region. As the North Sea is one of the busiest seas worldwide, the risk of impairing the ecosystems through anthropogenic pressures is high. Drawing on a literature-based review, 23 marine ecosystem services provided by the North Sea region were defined and linked to seven offshore energy fields comprising oil and natural gas, wind, tides and currents, waves, salinity gradients, algal biomass, and geothermal heat. The interactions were divided into four categories: dependence, impact, bidirectional, or no interaction. Oil and natural gas, as well as algae biomass, are the fields with the most relations with marine ecosystem services while waves and salinity gradients exhibit the least. Some marine ecosystem services (Conditions for Infrastructure, Regulation of Water Flows, and Cognitive Development are needed for all fields; Recreation and Tourism, Aesthetic and Cultural Perceptions and Traditions, Cognitive Development, and Sea Scape are impacted by all fields. The results of this research provide an improved basis for an ecosystem approach in transnational marine spatial planning.

Whale Multi-Disciplinary Studies: A Marine Education Infusion Unit. Northern New England Marine Education Project.

Science.gov (United States)

Maine Univ., Orono. Coll. of Education.

This multidisciplinary unit deals with whales, whaling lore and history, and the interaction of the whale with the complex marine ecosystem. It seeks to teach adaptation of marine organisms. It portrays the concept that man is part of the marine ecosystem and man's activities can deplete and degrade marine ecosystems, endangering the survival of…

Fast, accurate, and robust automatic marker detection for motion correction based on oblique kV or MV projection image pairs

International Nuclear Information System (INIS)

Slagmolen, Pieter; Hermans, Jeroen; Maes, Frederik; Budiharto, Tom; Haustermans, Karin; Heuvel, Frank van den

2010-01-01

Purpose: A robust and accurate method that allows the automatic detection of fiducial markers in MV and kV projection image pairs is proposed. The method allows to automatically correct for inter or intrafraction motion. Methods: Intratreatment MV projection images are acquired during each of five treatment beams of prostate cancer patients with four implanted fiducial markers. The projection images are first preprocessed using a series of marker enhancing filters. 2D candidate marker locations are generated for each of the filtered projection images and 3D candidate marker locations are reconstructed by pairing candidates in subsequent projection images. The correct marker positions are retrieved in 3D by the minimization of a cost function that combines 2D image intensity and 3D geometric or shape information for the entire marker configuration simultaneously. This optimization problem is solved using dynamic programming such that the globally optimal configuration for all markers is always found. Translational interfraction and intrafraction prostate motion and the required patient repositioning is assessed from the position of the centroid of the detected markers in different MV image pairs. The method was validated on a phantom using CT as ground-truth and on clinical data sets of 16 patients using manual marker annotations as ground-truth. Results: The entire setup was confirmed to be accurate to around 1 mm by the phantom measurements. The reproducibility of the manual marker selection was less than 3.5 pixels in the MV images. In patient images, markers were correctly identified in at least 99% of the cases for anterior projection images and 96% of the cases for oblique projection images. The average marker detection accuracy was 1.4±1.8 pixels in the projection images. The centroid of all four reconstructed marker positions in 3D was positioned within 2 mm of the ground-truth position in 99.73% of all cases. Detecting four markers in a pair of MV images

Cadmium accumulation by the marine red alga Porphyra umbilicalis

Energy Technology Data Exchange (ETDEWEB)

McLean, M.W.; Williamson, F.B.

1977-01-01

The characteristics of cadmium accumulation by the marine red alga Porphyra umbilicalis L. in culture are reported. The time course of uptake under various light conditions shows that cadmium is concentrated as the result of an on-going anabolic process and not as a consequence of a pH gradient as provided by photosynthesis. The effect of cycloheximide is in agreement with de novo protein synthesis being a prerequisite for cadmium accumulation. Autoradiography suggests a specific intracellular location for bound cadmium--apparently the nucleus.

Tritium in the Savannah River Estuary and adjacent marine waters

International Nuclear Information System (INIS)

Hayes, D.W.

1978-01-01

The tritium distribution in the Savannah River estuary and adjacent marine waters was measured to provide information on the dilution, mixing, and movement of Savannah River water in this region. The Savannah River marine region was chosen because the average tritium concentration in this river is 5 pCi/ml, whereas other rivers in the southeastern United States average less than 0.5 pCi/ml. The increased tritium concentration in the Savannah River is due to releases from the Savannah River Plant of the Department of Energy. Tritium measurements have proved particularly effective in estimating the flushing time of the Savannah River estuary (2.4 days) and in delineating the relative contribution to the water masses in Ossabaw and Port Royal Sounds from the River and from sea water. Ossabaw and Port Royal Sounds are located approximately 20 km south and north of the Savannah River estuary, respectively

Geo-Seas: delivering harmonised marine geoscience data on a European scale

Science.gov (United States)

Glaves, Helen; Schaap, Dick

2013-04-01

A large amount of both raw and interpreted marine geoscience data is held by an array of European organisations but its discovery and re-use can be very difficult. The data is stored in a variety of different formats and a range of different nomenclatures, scales and co-ordinate systems are used at the organisational, national and international level. This lack of standardisation hinders the user's ability to locate and access these datasets or to use them in an integrated way. The Geo-Seas project, an EU funded Framework 7 initiative, has addressed these barriers to the re-use of marine geological and geophysical data through the development of an on-line data discovery and access service (http://www.geo-seas.eu). It allows the end user to identify, evaluate and download a range of standardised marine geoscience data sets from 26 federated data centres across 17 European maritime countries. The dedicated portal, which currently provides access to more than 100,000 datasets, has been developed by adopting and adapting the existing technologies, standards and methodologies developed by the SeaDataNet project for the management and delivery of oceanographic data. Through the re-use of this pre-existing architecture including the associated common standards and vocabularies a joint infrastructure for both marine geoscientific and oceanographic data has been created which supports the development of multidisciplinary ocean science. The Geo-Seas project has also brought together and incorporated the metadata services developed by previous EU-funded projects such as EUSeaSed and SEISCAN. The formats of this legacy metadata have not only been used as the basis for developing the Geo-Seas metadatabase but it has also lead to these pre-existing metadata catalogues being upgraded to current international standards. The Geo-Seas initiative has lead to a major improvement in the availability of standardised marine geoscientific data throughout Europe allowing end users better

Supermarket Marine Biology.

Science.gov (United States)

Colby, Jennifer A.; And Others

1995-01-01

Describes a survey used to determine the availability of intact marine vertebrates and live invertebrates in supermarkets. Results shows that local supermarkets frequently provide a variety of intact marine organisms suitable for demonstrations, experiments, or dissections. (ZWH)

3D forward modeling and response analysis for marine CSEMs towed by two ships

Science.gov (United States)

Zhang, Bo; Yin, Chang-Chun; Liu, Yun-He; Ren, Xiu-Yan; Qi, Yan-Fu; Cai, Jing

2018-03-01

A dual-ship-towed marine electromagnetic (EM) system is a new marine exploration technology recently being developed in China. Compared with traditional marine EM systems, the new system tows the transmitters and receivers using two ships, rendering it unnecessary to position EM receivers at the seafloor in advance. This makes the system more flexible, allowing for different configurations (e.g., in-line, broadside, and azimuthal and concentric scanning) that can produce more detailed underwater structural information. We develop a three-dimensional goal-oriented adaptive forward modeling method for the new marine EM system and analyze the responses for four survey configurations. Oceanbottom topography has a strong effect on the marine EM responses; thus, we develop a forward modeling algorithm based on the finite-element method and unstructured grids. To satisfy the requirements for modeling the moving transmitters of a dual-ship-towed EM system, we use a single mesh for each of the transmitter locations. This mitigates the mesh complexity by refining the grids near the transmitters and minimizes the computational cost. To generate a rational mesh while maintaining the accuracy for single transmitter, we develop a goal-oriented adaptive method with separate mesh refinements for areas around the transmitting source and those far away. To test the modeling algorithm and accuracy, we compare the EM responses calculated by the proposed algorithm and semi-analytical results and from published sources. Furthermore, by analyzing the EM responses for four survey configurations, we are confirm that compared with traditional marine EM systems with only in-line array, a dual-ship-towed marine system can collect more data.

Identification of Carbohydrate Metabolism Genes in the Metagenome of a Marine Biofilm Community Shown to Be Dominated by Gammaproteobacteria and Bacteroidetes

Directory of Open Access Journals (Sweden)

Jennifer L. Edwards

2010-10-01

Full Text Available Polysaccharides are an important source of organic carbon in the marine environment and degradation of the insoluble and globally abundant cellulose is a major component of the marine carbon cycle. Although a number of species of cultured bacteria are known to degrade crystalline cellulose, little is known of the polysaccharide hydrolases expressed by cellulose-degrading microbial communities, particularly in the marine environment. Next generation 454 Pyrosequencing was applied to analyze the microbial community that colonizes and degrades insoluble polysaccharides in situ in the Irish Sea. The bioinformatics tool MG-RAST was used to examine the randomly sampled data for taxonomic markers and functional genes, and showed that the community was dominated by members of the Gammaproteobacteria and Bacteroidetes. Furthermore, the identification of 211 gene sequences matched to a custom-made database comprising the members of nine glycoside hydrolase families revealed an extensive repertoire of functional genes predicted to be involved in cellulose utilization. This demonstrates that the use of an in situ cellulose baiting method yielded a marine microbial metagenome considerably enriched in functional genes involved in polysaccharide degradation. The research reported here is the first designed to specifically address the bacterial communities that colonize and degrade cellulose in the marine environment and to evaluate the glycoside hydrolase (cellulase and chitinase gene repertoire of that community, in the absence of the biases associated with PCR-based molecular techniques.

76 FR 77782 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2011-12-14

..., 1963), but because of ecological or physiological requirements, many marine animals may need to remain... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Commonwealth of the Northern Mariana Islands, February to March 2012 AGENCY: National Marine Fisheries Service (NMFS), National...

78 FR 17359 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2013-03-21

..., 1963), but because of ecological or physiological requirements, many marine animals may need to remain... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Northeast Atlantic Ocean, June to July, 2013 AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

76 FR 33246 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2011-06-08

... ecological or physiological requirements, many marine animals may need to remain in areas where they are... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Central-Western Bering Sea, August 2011 AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

75 FR 8652 - Incidental Takes of Marine Mammals During Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2010-02-25

... for marine animals before and during airgun operations. NMFS believes that the realistic possibility... Takes of Marine Mammals During Specified Activities; Marine Geophysical Survey in the Commonwealth of the Northern Mariana Islands, April to June 2010 AGENCY: National Marine Fisheries Service (NMFS...

77 FR 19242 - Takes of Marine Mammals Incidental to Specified Activities; Low-Energy Marine Geophysical Survey...

Science.gov (United States)

2012-03-30

...., 1995; Thorpe, 1963), but because of ecological or physiological requirements, many marine animals may... Marine Mammals Incidental to Specified Activities; Low- Energy Marine Geophysical Survey in the Central Pacific Ocean, May Through June, 2012 AGENCY: National Marine Fisheries Service (NMFS), National Oceanic...

77 FR 25966 - Takes of Marine Mammals Incidental to Specified Activities; Three Marine Geophysical Surveys in...

Science.gov (United States)

2012-05-02

..., 1963), but because of ecological or physiological requirements, many marine animals may need to remain... Marine Mammals Incidental to Specified Activities; Three Marine Geophysical Surveys in the Northeast Pacific Ocean, June Through July 2012 AGENCY: National Marine Fisheries Service, National Oceanic and...

Bioaccumulation of uranium 234U and 238U in marine birds

International Nuclear Information System (INIS)

Borylo, A.; Skwarzec, B.

2010-01-01

In the paper was presented results of our study about uranium 234 U and 238 U radioactivity in the marine birds samples, collected in the Polish area of the southern Baltic Sea. We chose 11 species of sea birds: three species permanently residing at southern Baltic, four species of wintering birds and three species of migrating birds. The obtained results indicated that uranium is very irregularly distributed in organs and tissues of marine birds. The highest uranium content is characterized in liver, rest of viscera and feathers, the smallest in skin and muscles. The uranium concentration was higher for carnivorous species (long-tailed duck (C. hyemalis), common eider (S. mollissima), lower for species eating fish (great cormorant (P. carbo), common guillemot (U. aalge), red-throated diver (G. stellata) and razorbill (A. tarda)), but the biggest amounts for herbivorous species [tufted duck (A. fuligula) and eurasian coot (F. atra)]. About 63-67% of uranium, which was located in feathers of two species of marine birds: razorbill (A. tarda) and long-tailed duck (C. hymealis), was apparently adsorbed, which suggests that uranium adsorption on the feathers may be an important transfer from air to water. (author)

Radionuclides concentration in marine environmental samples along the coast of Vietnam

International Nuclear Information System (INIS)

Nguyen Trong Ngo; Nguyen Thanh Binh; Nguyen Van Phuc; Le Nhu Sieu; Truong Y; Mai Thi Huong; Nguyen Thi Linh; Nguyen Mong Sinh; Phan Son Hai; Le Ngoc Chung; Dang Duc Nhan; Nguyen Quang Long; Nguyen Hao Quang; Tran Tuyet Mai

2009-01-01

Studies on radioactivity inventories in environmental samples are necessary as they will serve as baseline data for assessing any environmental impact usage of nuclear-based activities. Approximately 700 data on 238 U, 232 Th, 226 Ra, 90 Sr, 137 Cs, 239,240 Pu activity concentrations in 150 samples i.e. sea water, sediment, fish, mollusc, crustaceans, oyster and weeds samples collected from 7 various locations in Vietnam (Hai Phong, Nghe An, Khanh Hoa, Ninh Thuan, Binh Thuan, Vung Tau, Tien Giang) throughout 1999-2008 are summarised and presented in this paper. Generally, the levels of artificial radionuclides in the studied marine environmental samples are lower as compared to other Asia-Pacific countries while naturally occurred radionuclides activity concentrations obtained were found to be in accordance with respective data from other studies within Pacific region. The radionuclides bioaccumulation factors studied in Red laver and oyster were mostly found to be high; therefore, further reinvestigation should be done for these biota that will be used as bio-fingerprint indicators in monitoring the marine environment from nuclear-based pollutions. The data set obtained from this study is available to the Asia-Pacific Marine Radioactivity Database. (author)

Emerging biopharmaceuticals from marine actinobacteria.

Science.gov (United States)

Hassan, Syed Shams Ul; Anjum, Komal; Abbas, Syed Qamar; Akhter, Najeeb; Shagufta, Bibi Ibtesam; Shah, Sayed Asmat Ali; Tasneem, Umber

2017-01-01

Actinobacteria are quotidian microorganisms in the marine world, playing a crucial ecological role in the recycling of refractory biomaterials and producing novel secondary metabolites with pharmaceutical applications. Actinobacteria have been isolated from the huge area of marine organisms including sponges, tunicates, corals, mollusks, crabs, mangroves and seaweeds. Natural products investigation of the marine actinobacteria revealed that they can synthesize numerous natural products including alkaloids, polyketides, peptides, isoprenoids, phenazines, sterols, and others. These natural products have a potential to provide future drugs against crucial diseases like cancer, HIV, microbial and protozoal infections and severe inflammations. Therefore, marine actinobacteria portray as a pivotal resource for marine drugs. It is an upcoming field of research to probe a novel and pharmaceutically important secondary metabolites from marine actinobacteria. In this review, we attempt to summarize the present knowledge on the diversity, chemistry and mechanism of action of marine actinobacteria-derived secondary metabolites from 2007 to 2016. Copyright © 2016 Elsevier B.V. All rights reserved.

Implications of Artefacts Reduction in the Planning CT Originating from Implanted Fiducial Markers

International Nuclear Information System (INIS)

Kassim, Iskandar; Joosten, Hans; Barnhoorn, Jaco C.; Heijmen, Ben J.M.; Dirkx, Maarten L.P.

2011-01-01

The efficacy of metal artefact reduction (MAR) software to suppress artefacts in reconstructed computed tomography (CT) images originating from small metal objects, like tumor markers and surgical clips, was evaluated. In addition, possible implications of using digital reconstructed radiographs (DRRs), based on the MAR CT images, for setup verification were analyzed. A phantom and 15 patients with different tumor sites and implanted markers were imaged with a multislice CT scanner. The raw image data was reconstructed both with the clinically used filtered-backprojection (FBP) and with the MAR software. Using the MAR software, improvements in image quality were often observed in CT slices with markers or clips. Especially when several markers were located near to each other, fewer streak artefacts were observed than with the FBP algorithm. In addition, the shape and size of markers could be identified more accurately, reducing the contoured marker volumes by a factor of 2. For the phantom study, the CT numbers measured near to the markers corresponded more closely to the expected values. However, the MAR images were slightly more smoothed compared with the images reconstructed with FBP. For 8 prostate cancer patients in this study, the interobserver variation in 3D marker definition was similar (<0.4 mm) when using DRRs based on either FBP or MAR CT scans. Automatic marker matches also showed a similar success rate. However, differences in automatic match results up to 1 mm, caused by differences in the marker definition, were observed, which turned out to be (borderline) statistically significant (p = 0.06) for 2 patients. In conclusion, the MAR software might improve image quality by suppressing metal artefacts, probably allowing for a more reliable delineation of structures. When implanted markers or clips are used for setup verification, the accuracy may slightly be improved as well, which is relevant when using very tight clinical target volume (CTV) to

Marine Mineral Exploration

DEFF Research Database (Denmark)

in EEZ areas are fairly unknown; many areas need detailed mapping and mineral exploration, and the majority of coastal or island states with large EEZ areas have little experience in exploration for marine hard minerals. This book describes the systematic steps in marine mineral exploration....... Such exploration requires knowledge of mineral deposits and models of their formation, of geophysical and geochemical exploration methods, and of data evaluation and interpretation methods. These topics are described in detail by an international group of authors. A short description is also given of marine...

Biodiversity's big wet secret: the global distribution of marine biological records reveals chronic under-exploration of the deep pelagic ocean.

Directory of Open Access Journals (Sweden)

Thomas J Webb

Full Text Available BACKGROUND: Understanding the distribution of marine biodiversity is a crucial first step towards the effective and sustainable management of marine ecosystems. Recent efforts to collate location records from marine surveys enable us to assemble a global picture of recorded marine biodiversity. They also effectively highlight gaps in our knowledge of particular marine regions. In particular, the deep pelagic ocean--the largest biome on Earth--is chronically under-represented in global databases of marine biodiversity. METHODOLOGY/PRINCIPAL FINDINGS: We use data from the Ocean Biogeographic Information System to plot the position in the water column of ca 7 million records of marine species occurrences. Records from relatively shallow waters dominate this global picture of recorded marine biodiversity. In addition, standardising the number of records from regions of the ocean differing in depth reveals that regardless of ocean depth, most records come either from surface waters or the sea bed. Midwater biodiversity is drastically under-represented. CONCLUSIONS/SIGNIFICANCE: The deep pelagic ocean is the largest habitat by volume on Earth, yet it remains biodiversity's big wet secret, as it is hugely under-represented in global databases of marine biological records. Given both its value in the provision of a range of ecosystem services, and its vulnerability to threats including overfishing and climate change, there is a pressing need to increase our knowledge of Earth's largest ecosystem.

76 FR 68720 - Takes of Marine Mammals Incidental to Specified Activities; Low-Energy Marine Geophysical Survey...

Science.gov (United States)

2011-11-07

... Marine Mammals Incidental to Specified Activities; Low- Energy Marine Geophysical Survey in the Western... conducting a low-energy marine geophysical (i.e., seismic) survey in the western tropical Pacific Ocean... Science Foundation (NSF), and ``Environmental Assessment of a Low-Energy Marine Geophysical Survey by the...

76 FR 18167 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2011-04-01

..., many marine animals may need to remain in areas where they are exposed to chronic stimuli (Richardson... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Central Gulf of Alaska, June, 2011 AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric...

76 FR 6430 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2011-02-04

..., many marine animals may need to remain in areas where they are exposed to chronic stimuli (Richardson... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Pacific Ocean off Costa Rica, April Through May, 2011 AGENCY: National Marine Fisheries Service (NMFS), National Oceanic...

76 FR 57959 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2011-09-19

..., many marine animals may need to remain in areas where they are exposed to chronic stimuli (Richardson... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Central Pacific Ocean, November, 2011 Through January, 2012 AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

78 FR 33357 - Takes of Marine Mammals Incidental to Specified Activities; Taking Marine Mammals Incidental to...

Science.gov (United States)

2013-06-04

... confidence in these values is unknown. Table 3--Marine Mammal Density Estimates Density Species (animals/km\\2... unintentional taking of marine animals occurring incidental to the shock testing which involved large explosives... Marine Mammals Incidental to Specified Activities; Taking Marine Mammals Incidental to Conducting...

76 FR 7548 - Taking and Importing Marine Mammals; Taking of Marine Mammals Incidental to Conducting Precision...

Science.gov (United States)

2011-02-10

... Importing Marine Mammals; Taking of Marine Mammals Incidental to Conducting Precision Strike Weapons Testing and Training by Eglin Air Force Base in the Gulf of Mexico AGENCY: National Marine Fisheries Service... a Letter of Authorization. SUMMARY: In accordance with provisions of the Marine Mammal Protection...

75 FR 16754 - Taking and Importing Marine Mammals; Taking of Marine Mammals Incidental to Conducting Precision...

Science.gov (United States)

2010-04-02

... Importing Marine Mammals; Taking of Marine Mammals Incidental to Conducting Precision Strike Weapons Testing and Training by Eglin Air Force Base in the Gulf of Mexico AGENCY: National Marine Fisheries Service... a Letter of Authorization. SUMMARY: In accordance with provisions of the Marine Mammal Protection...

Tantalum markers in radiography

International Nuclear Information System (INIS)

Aronson, A.S.; Jonsson, N.; Alberius, P.

1985-01-01

The biocompatibility of two types of radiopaque tantalum markers was evaluated histologically. Reactions to pin markers (99.9% purity) and spherical markers (95.2% purity) were investigated after 3-6 weeks in rabbits and 5-48 weeks in children with abnormal growth. Both marker types were firmly attached to bone trabeculae; this was most pronounced in rabbit bone, and no adverse macroscopic reactions were observed. Microscopically, no reactions or only slight fibrosis of bone tissue were detected, while soft tissues only demonstrated a minor inflammatory reaction. Nevertheless, the need for careful preparation and execution of marker implantations is stressed, and particularly avoidance iof the use of emery in sharpening of cannulae. The bioinertness of tantalum was reconfirmed as was its suitability for use as skeletal and soft tissue radiographic markers. (orig.)

Bacterial colonization of metallic surfaces exposed in marine environment. Use of bacterial lipids

International Nuclear Information System (INIS)

Guezennec, Jean

1986-01-01

Addressing fouling and more particularly biofouling phenomena occurring notably on structures in marine environment, this research thesis first describes the fouling phenomenon (components, sequences of biofouling development, bio-film chemical composition). The author reports the study of the composition of the biological veil (microbiological methods, presentation of the different components), addresses the various types of lipids (bacterial markers and others). Then, after a presentation of the experimental equipment and methods (test cells, sample preparation, gas phase chromatography, hydrogenation and bromination, mass spectrometry), the author discusses the influence of different parameters such as the substrate type, speed, season, chlorination, and correlation with thermal transfer [fr

Genetic connectivity of the broadcast spawning reef coral Platygyra sinensis on impacted reefs, and the description of new microsatellite markers

Science.gov (United States)

Tay, Y. C.; Noreen, A. M. E.; Suharsono; Chou, L. M.; Todd, P. A.

2015-03-01

As tropical coral reef habitats continue to be lost or degraded, understanding the genetic diversity and connectivity among populations is essential for making informed management decisions. This is particularly important in rapidly developing, land-scarce nations (such as Singapore) that require targeted conservation efforts. Sixty percentage of Singapore's coral cover has been lost over the past five decades, and with further coastal reclamation underway, it is imperative to understand the effects of development on coral connectivity. In this study, we used seven microsatellite markers, of which six are newly described here, to investigate the genetic diversity and connectivity of the massive hard coral Platygyra sinensis at nine sites in Singapore and three in the nearby Indonesian island of Bintan. Our results show that P. sinensis currently retains large effective population sizes, high genetic diversity, as well as high connectivity among sites within each locality, which suggest that these populations have good potential for continued survival provided that there are no island-wide disturbances. However, the Singapore Strait appears to be a mild barrier to gene flow, which may lead to an increased reliance on self-seeding at either location. We suggest some directions for their management based on these potential population boundaries, which can help pave the path for marine conservation planning in Singapore.

Unified Description of the Mechanical Properties of Typical Marine Soil and Its Application

Directory of Open Access Journals (Sweden)

Yongqiang Li

2017-01-01

Full Text Available This study employed a modified elastoplastic constitutive model that can systematically describe the monotonic and cyclic mechanical behaviors of typical marine soils combining the subloading, normal, and superloading yield surfaces, in the seismic response analysis of three-dimensional (3D marine site. New evolution equations for stress-induced anisotropy development and the change in the overconsolidation of soils were proposed. This model can describe the unified behaviour of unsaturated soil and saturated soil using independent state variables and can uniquely describe the multiple mechanical properties of soils under general stress states, without changing the parameter values using the transform stress method. An effective stress-based, fully coupled, explicit finite element–finite difference method was established based on this model and three-phase field theory. A finite deformation analysis was presented by introducing the Green-Naghdi rate tensor. The simulation and analysis indicated that the proposed method was sufficient for simulating the seismic disaster process of 3D marine sites. The results suggested that the ground motion intensity would increase due to the local uneven complex topography and site effect and also provided the temporal and spatial distribution of landslide and collapse at the specific location of the marine site.

77 FR 4765 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Science.gov (United States)

2012-01-31

... physiological requirements, many marine animals may need to remain in areas where they are exposed to chronic... readily audible to the animals based on measured received levels and the hearing sensitivity of the marine... Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the Northwest Pacific...

Structure of macroalgal communities on tropical rocky shores inside and outside a marine protected area.

Science.gov (United States)

Portugal, Adriana Brizon; Carvalho, Fabrício Lopes; Soares, Marcelo de Oliveira; Horta, Paulo Antunes; de Castro Nunes, José Marcos

2017-09-01

The structure of marine macroalgal communities and morpho-functional groups were investigated in a poorly characterized region on the Tropical Southwestern Atlantic coast, Brazil. The survey was conducted at six rocky shores located on the mainland and on coastal islands distributed inside a marine protected area (MPA) and outside the MPA (near a densely populated area). We hypothesized that tropical rocky shores inside the MPA and islands have higher species richness, diversity, and evenness of marine macroalgae. Results confirmed that species richness, diversity and evenness were significantly higher inside the MPA than in rocky shores outside the MPA. Only species richness was higher on islands than on the mainland. The results suggest that human impacts could lead to a competitive advantage and dominance in the articulated calcareous morphotype, resulting in community differences and lower benthic biodiversity in tropical ecosystems near urbanized sites. Copyright © 2017 Elsevier Ltd. All rights reserved.

Assessment of the effects of noise and vibration from offshore wind farms on marine wildlife

Energy Technology Data Exchange (ETDEWEB)

Vella, G; Rushforth, I; Mason, E; Hough, A; England, R; Styles, P; Holt, T; Thorne, P

2001-07-01

This study involved a review of relevant studies and information on the effects of noise and vibration on marine wildlife from the construction and operation of offshore wind farms, and the identification of gaps and uncertainties in existing knowledge, recommendations for further studies to fill the gaps in knowledge, and the preparation of an inventory of planned and ongoing studies relating to the effects of offshore wind farms. The UK government's commitment to renewable energy, and the lifecycle of an offshore wind farm and potential locations are discussed. The mechanisms of noise propagation, physical noise and vibration, the use of sound by marine species such as whales and seals, the response of marine organisms to anthropogenic noise, and the colonisation of artificial reefs are examined. The behavioural response of seals and whales, the effects on fish population dynamics, and the need for further monitoring are considered.

Assessment of the effects of noise and vibration from offshore wind farms on marine wildlife

Energy Technology Data Exchange (ETDEWEB)

Vella, G.; Rushforth, I.; Mason, E.; Hough, A.; England, R.; Styles, P.; Holt, T.; Thorne, P.

2001-07-01

This study involved a review of relevant studies and information on the effects of noise and vibration on marine wildlife from the construction and operation of offshore wind farms, and the identification of gaps and uncertainties in existing knowledge, recommendations for further studies to fill the gaps in knowledge, and the preparation of an inventory of planned and ongoing studies relating to the effects of offshore wind farms. The UK government's commitment to renewable energy, and the lifecycle of an offshore wind farm and potential locations are discussed. The mechanisms of noise propagation, physical noise and vibration, the use of sound by marine species such as whales and seals, the response of marine organisms to anthropogenic noise, and the colonisation of artificial reefs are examined. The behavioural response of seals and whales, the effects on fish population dynamics, and the need for further monitoring are considered.

Relocation of a rust resistance gene R 2 and its marker-assisted gene pyramiding in confection sunflower (Helianthus annuus L.).

Science.gov (United States)

Qi, L L; Ma, G J; Long, Y M; Hulke, B S; Gong, L; Markell, S G

2015-03-01

The rust resistance gene R 2 was reassigned to linkage group 14 of the sunflower genome. DNA markers linked to R 2 were identified and used for marker-assisted gene pyramiding in a confection type genetic background. Due to the frequent evolution of new pathogen races, sunflower rust is a recurring threat to sunflower production worldwide. The inbred line Morden Cross 29 (MC29) carries the rust resistance gene, R 2 , conferring resistance to numerous races of rust fungus in the US, Canada, and Australia, and can be used as a broad-spectrum resistance resource. Based on phenotypic assessments and SSR marker analyses on the 117 F2 individuals derived from a cross of HA 89 with MC29 (USDA), R 2 was mapped to linkage group (LG) 14 of the sunflower, and not to the previously reported location on LG9. The closest SSR marker HT567 was located at 4.3 cM distal to R 2 . Furthermore, 36 selected SNP markers from LG14 were used to saturate the R 2 region. Two SNP markers, NSA_002316 and SFW01272, flanked R 2 at a genetic distance of 2.8 and 1.8 cM, respectively. Of the three closely linked markers, SFW00211 amplified an allele specific for the presence of R 2 in a marker validation set of 46 breeding lines, and SFW01272 was also shown to be diagnostic for R 2 . These newly developed markers, together with the previously identified markers linked to the gene R 13a , were used to screen 524 F2 individuals from a cross of a confection R 2 line and HA-R6 carrying R 13a . Eleven homozygous double-resistant F2 plants with the gene combination of R 2 and R 13a were obtained. This double-resistant line will be extremely useful in confection sunflower, where few rust R genes are available, risking evolution of new virulence phenotypes and further disease epidemics.

Origin of particulate organic carbon in the marine atmosphere as indicated by it stable carbon isotopic composition

International Nuclear Information System (INIS)

Chesselet, R.; Fontugne, M.; Buat-Menard, P.; Ezat, U.; Lambert, C.E.

1981-01-01

Organic carbon concentration and isotopic composition were determined in samples of atmospheric particulate matter collected in 1979 at remote marine locations (Enewetak atoll, Sargasso Sea) during the SEAREX (Sea-Air Exchange) program field experiments. Atmospheric Particulate Organic Carbon (POC) concentrations were found to be in the range of 0.3 to 1.2 mg. m -3 , in agreement with previous literature data. The major mass of POC was found on the smallest particles (r 13 C/ 12 C of the small particles is close to the one expected (d 13 C = 26 +- 2 0 //sub infinity/) for atmospheric POC of continental origin. For all the samples analysed so far, it appears that more than 80% of atmospheric POC over remote marine areas is of continental origin. This can be explained either by long-range transport of small sized continental organic aserosols or by the production of POC in the marine atmosphere from a vapor phase organic carbon pool of continental origin. The POC in the large size fraction of marine aerosols ( 13 C = -21 +- 2 0 / 00 ) for POC associated with sea-salt droplets transported to the marine atmosphere

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

DEFF Research Database (Denmark)

Milano, I.; Babbucci, M.; Cariani, A.

2014-01-01

fishery. Analysis of 850 individuals from 19 locations across the entire distribution range showed evidence for several outlier loci, with significantly higher resolving power. While 299 putatively neutral SNPs confirmed the genetic break between basins (FCT = 0.016) and weak differentiation within basins...... even when neutral markers provide genetic homogeneity across populations. Here, 381 SNPs located in transcribed regions were used to assess largeand fine-scale population structure in the European hake (Merluccius merluccius), a widely distributed demersal species of high priority for the European...

Bladder tumor markers beyond cytology: International Consensus Panel on bladder tumor markers.

NARCIS (Netherlands)

Lokeshwar, V.B.; Habuchi, T.; Grossman, H.B.; Murphy, W.M.; Hautmann, S.H.; Hemstreet, G.P.; Bono, A.V.; Getzenberg, R.H.; Goebell, P.; Schmitz-Drager, B.J.; Schalken, J.A.; Fradet, Y.; Marberger, M.; Messing, E.; Droller, M.J.

2005-01-01

This is the first of 2 articles that summarize the findings of the International Consensus Panel on cytology and bladder tumor markers. The objectives of our panel were to reach a consensus on the areas where markers are needed, to define the attributes of an ideal tumor marker, and to identify

Marine medicinal glycomics

Directory of Open Access Journals (Sweden)

Vitor Hugo Pomin

2014-01-01

Full Text Available Glycomics is an international initiative aimed to understand the structure and function of the glycans from a given type of cell, tissue, organism, kingdom or even environment, as found under certain conditions. Glycomics is one of the latest areas of intense biological research. Glycans of marine sources are unique in terms of structure and function. They differ considerably from those of terrestrial origin. This review discusses the most known marine glycans of potential therapeutic properties. They are chitin, chitosan, and sulfated polysaccharides named glycosaminoglycans, sulfated fucans and sulfated galactans. Their medical actions are very broad. When certain structural requirements are found, these glycans can exhibit beneficial effects in inflammation, coagulation, thrombosis, cancer growth/metastasis and vascular biology. Both structure and therapeutic mechanisms of action of these marine glycans are discussed here in straight context with the current glycomic age through a project suggestively named Marine Medicinal Glycomics.

75 FR 19670 - Marine Highway Projects

Science.gov (United States)

2010-04-15

... DEPARTMENT OF TRANSPORTATION Maritime Administration Marine Highway Projects ACTION: Solicitation of applications for Marine highway projects. SUMMARY: The Department of Transportation is soliciting applications for Marine Highway Projects as specified in the America's Marine Highway Program Final Rule, MARAD...

An accurate algorithm to match imperfectly matched images for lung tumor detection without markers.

Science.gov (United States)

Rozario, Timothy; Bereg, Sergey; Yan, Yulong; Chiu, Tsuicheng; Liu, Honghuan; Kearney, Vasant; Jiang, Lan; Mao, Weihua

2015-05-08

In order to locate lung tumors on kV projection images without internal markers, digitally reconstructed radiographs (DRRs) are created and compared with projection images. However, lung tumors always move due to respiration and their locations change on projection images while they are static on DRRs. In addition, global image intensity discrepancies exist between DRRs and projections due to their different image orientations, scattering, and noises. This adversely affects comparison accuracy. A simple but efficient comparison algorithm is reported to match imperfectly matched projection images and DRRs. The kV projection images were matched with different DRRs in two steps. Preprocessing was performed in advance to generate two sets of DRRs. The tumors were removed from the planning 3D CT for a single phase of planning 4D CT images using planning contours of tumors. DRRs of background and DRRs of tumors were generated separately for every projection angle. The first step was to match projection images with DRRs of background signals. This method divided global images into a matrix of small tiles and similarities were evaluated by calculating normalized cross-correlation (NCC) between corresponding tiles on projections and DRRs. The tile configuration (tile locations) was automatically optimized to keep the tumor within a single projection tile that had a bad matching with the corresponding DRR tile. A pixel-based linear transformation was determined by linear interpolations of tile transformation results obtained during tile matching. The background DRRs were transformed to the projection image level and subtracted from it. The resulting subtracted image now contained only the tumor. The second step was to register DRRs of tumors to the subtracted image to locate the tumor. This method was successfully applied to kV fluoro images (about 1000 images) acquired on a Vero (BrainLAB) for dynamic tumor tracking on phantom studies. Radiation opaque markers were

Correlation in chicken between the marker LEI0258 alleles and Major Histocompatibility Complex sequences

DEFF Research Database (Denmark)

Chazara, Olympe; Juul-Madsen, Helle Risdahl; Chang, Chi-Seng

Background The LEI0258 marker is located within the B region of the chicken Major Histocompatibility Complex (MHC), and is surprisingly well associated with serology. Therefore, the correlation between the LEI0258 alleles and the MHC class I and the class II alleles at the level of sequences is w...

77 FR 841 - Taking and Importing Marine Mammals: Taking Marine Mammals Incidental to U.S. Navy Operations of...

Science.gov (United States)

2012-01-06

... and the Single Ping Equivalent (SPE) To model potential impacts to marine animals from exposure to... Atmospheric Administration 50 CFR Part 218 Taking and Importing Marine Mammals: Taking Marine Mammals... [Docket No. 110808485-1534-01] RIN 0648-BB14 Taking and Importing Marine Mammals: Taking Marine Mammals...

Identifying Sources of Marine Litter

OpenAIRE

VEIGA Joana Mira; FLEET David; KINSEY Sue; NILSSON Per; VLACHOGIANNI Thomais; WERNER Stefanie; GALGANI Francois; THOMPSON Richard; DAGEVOS Jeroen; GAGO Jesus; SOBRAL Paula; CRONIN Richard

2016-01-01

Marine litter is a global problem causing harm to marine wildlife, coastal communities and maritime activities. It also embodies an emerging concern for human health and safety. The reduction of marine litter pollution poses a complex challenge for humankind, requiring adjustments in human behaviour as well as in the different phases of the life-cycle of products and across multiple economic sectors. The Marine Strategy Framework Directive (MSFD) requires European Member States to monitor...

Tumor markers in clinical oncology

International Nuclear Information System (INIS)

Novakovic, S.

2004-01-01

The subtle differences between normal and tumor cells are exploited in the detection and treatment of cancer. These differences are designated as tumor markers and can be either qualitative or quantitative in their nature. That means that both the structures that are produced by tumor cells as well as the structures that are produced in excessive amounts by host tissues under the influence of tumor cells can function as tumor markers. Speaking in general, the tumor markers are the specific molecules appearing in the blood or tissues and the occurrence of which is associated with cancer. According to their application, tumor markers can be roughly divided as markers in clinical oncology and markers in pathology. In this review, only tumor markers in clinical oncology are going to be discussed. Current tumor markers in clinical oncology include (i) oncofetal antigens, (ii) placental proteins, (iii) hormones, (iv) enzymes, (v) tumor-associated antigens, (vi) special serum proteins, (vii) catecholamine metabolites, and (viii) miscellaneous markers. As to the literature, an ideal tumor marker should fulfil certain criteria - when using it as a test for detection of cancer disease: (1) positive results should occur in the early stages of the disease, (2) positive results should occur only in the patients with a specific type of malignancy, (3) positive results should occur in all patients with the same malignancy, (4) the measured values should correlate with the stage of the disease, (5) the measured values should correlate to the response to treatment, (6) the marker should be easy to measure. Most tumor markers available today meet several, but not all criteria. As a consequence of that, some criteria were chosen for the validation and proper selection of the most appropriate marker in a particular malignancy, and these are: (1) markers' sensitivity, (2) specificity, and (3) predictive values. Sensitivity expresses the mean probability of determining an elevated tumor

Chemical Investigations of Marine Filamentous and Zoosporic Fungi and Studies in Marine Microbial Chemical Ecology

OpenAIRE

Jenkins, Kelly M.

1998-01-01

The natural products chemistry of marine microorganisms is an emerging area of organic chemistry with the aim of discovering novel secondary metabolites exhibiting both biomedical and ecological activities. While marine bacteria have proven to be a productive source of new natural products, there are many groups of marine microorganisms which have not been fully investigated. In particular, marine fungi represent an untapped and potentially novel source of bioactive secondary metabolites. Whi...

Stereotactic core needle breast biopsy marker migration: An analysis of factors contributing to immediate marker migration.

Science.gov (United States)

Jain, Ashali; Khalid, Maria; Qureshi, Muhammad M; Georgian-Smith, Dianne; Kaplan, Jonah A; Buch, Karen; Grinstaff, Mark W; Hirsch, Ariel E; Hines, Neely L; Anderson, Stephan W; Gallagher, Katherine M; Bates, David D B; Bloch, B Nicolas

2017-11-01

To evaluate breast biopsy marker migration in stereotactic core needle biopsy procedures and identify contributing factors. This retrospective study analyzed 268 stereotactic biopsy markers placed in 263 consecutive patients undergoing stereotactic biopsies using 9G vacuum-assisted devices from August 2010-July 2013. Mammograms were reviewed and factors contributing to marker migration were evaluated. Basic descriptive statistics were calculated and comparisons were performed based on radiographically-confirmed marker migration. Of the 268 placed stereotactic biopsy markers, 35 (13.1%) migrated ≥1 cm from their biopsy cavity. Range: 1-6 cm; mean (± SD): 2.35 ± 1.22 cm. Of the 35 migrated biopsy markers, 9 (25.7%) migrated ≥3.5 cm. Patient age, biopsy pathology, number of cores, and left versus right breast were not associated with migration status (P> 0.10). Global fatty breast density (P= 0.025) and biopsy in the inner region of breast (P = 0.031) were associated with marker migration. Superior biopsy approach (P= 0.025), locally heterogeneous breast density, and t-shaped biopsy markers (P= 0.035) were significant for no marker migration. Multiple factors were found to influence marker migration. An overall migration rate of 13% supports endeavors of research groups actively developing new biopsy marker designs for improved resistance to migration. • Breast biopsy marker migration is documented in 13% of 268 procedures. • Marker migration is affected by physical, biological, and pathological factors. • Breast density, marker shape, needle approach etc. affect migration. • Study demonstrates marker migration prevalence; marker design improvements are needed.

Oceanic processes in marine pollution

International Nuclear Information System (INIS)

Baumgartner, D.J.; Duedall, I.W.

1990-01-01

This book covers the following areas: bioaccumulation of Polycyclic Aromatic hydrocarbons in marine environments; behavior of drilling fluid discharges off the coast of California; effects of drilling fluids on marine organisms; and the effects of radioactive waste disposal on marine amphipods

Influence of marine current on vertical migration of Pb in marine bay

Science.gov (United States)

Yu, Chen; Hong, Ai; Danfeng, Yang; Huijuan, Zhao; Dongfang, Yang

2018-02-01

This paper analyzed that vertical migration of Pb contents waters in Jiaozhou Bay, and revealed the influence of marine current on vertical migration process. Results showed that Pb contents in bottom waters of Jiaozhou Bay in April and July 1988 were 1.49-18.53 μg L-1 and 12.68/-27.64 μg L-1, respectively. The pollution level of Pb in bottom waters was moderate to heavy, and were showing temporal variations and spatial heterogeneity. The vertical migration process of Pb in April 1988 included a drifting process from the southwest to the north by means of the marine current was rapid in this region. The vertical migration process of Pb in July 1988 in the open waters included no drifting process since the flow rate of marine current was relative low in this region. The vertical migration process of Pb was jointly determined by vertical water’s effect, source input and water exchange, and the influence of marine current on the vertical migration of Pb in marine bay was significant.

Automated recognition of stratigraphic marker shales from geophysical logs in iron ore deposits

Science.gov (United States)

Silversides, Katherine; Melkumyan, Arman; Wyman, Derek; Hatherly, Peter

2015-04-01

The mining of stratiform ore deposits requires a means of determining the location of stratigraphic boundaries. A variety of geophysical logs may provide the required data but, in the case of banded iron formation hosted iron ore deposits in the Hamersley Ranges of Western Australia, only one geophysical log type (natural gamma) is collected for this purpose. The information from these logs is currently processed by slow manual interpretation. In this paper we present an alternative method of automatically identifying recurring stratigraphic markers in natural gamma logs from multiple drill holes. Our approach is demonstrated using natural gamma geophysical logs that contain features corresponding to the presence of stratigraphically important marker shales. The host stratigraphic sequence is highly consistent throughout the Hamersley and the marker shales can therefore be used to identify the stratigraphic location of the banded iron formation (BIF) or BIF hosted ore. The marker shales are identified using Gaussian Processes (GP) trained by either manual or active learning methods and the results are compared to the existing geological interpretation. The manual method involves the user selecting the signatures for improving the library, whereas the active learning method uses the measure of uncertainty provided by the GP to select specific examples for the user to consider for addition. The results demonstrate that both GP methods can identify a feature, but the active learning approach has several benefits over the manual method. These benefits include greater accuracy in the identified signatures, faster library building, and an objective approach for selecting signatures that includes the full range of signatures across a deposit in the library. When using the active learning method, it was found that the current manual interpretation could be replaced in 78.4% of the holes with an accuracy of 95.7%.

Rapid assessment of risks to a mobile marine mammal in an ecosystem-scale marine protected area.

Science.gov (United States)

Grech, A; Marsh, H

2008-06-01

Ecosystem-scale networks of marine protected areas (MPAs) are important conservation tools, but their effectiveness is difficult to quantify in a time frame appropriate to species conservation because of uncertainties in the data available. The dugong (Dugong dugon) is a mobile marine species that occurs in shallow inshore waters of an ecosystem-scale network of MPAs (the Great Barrier Reef World Heritage Area [GBRWHA]). We developed a rapid approach to assess risk to dugongs in the region and evaluate options to ameliorate that risk. We used expert opinion and a Delphi technique to identify and rank 5 human factors with the potential to adversely affect dugongs and their sea grass habitats: netting, indigenous hunting, trawling, vessel traffic, and poor-quality terrestrial runoff. We then quantified and compared the distribution of these factors with a spatially explicit model of dugong distribution. We estimated that approximately 96% of habitat of high conservation value for dugongs in the GBRWHA is at low risk from human activities. Using a sensitivity analysis, we found that to decrease risk, commercial netting or indigenous hunting had to be reduced in remote areas and the effects of vessel traffic, terrestrial runoff, and commercial netting had to be reduced in urban areas. This approach enabled us to compare and rank risks so as to identify the most severe risks and locate specific sites that require further management attention.

High Performance Marine Vessels

CERN Document Server

Yun, Liang

2012-01-01

High Performance Marine Vessels (HPMVs) range from the Fast Ferries to the latest high speed Navy Craft, including competition power boats and hydroplanes, hydrofoils, hovercraft, catamarans and other multi-hull craft. High Performance Marine Vessels covers the main concepts of HPMVs and discusses historical background, design features, services that have been successful and not so successful, and some sample data of the range of HPMVs to date. Included is a comparison of all HPMVs craft and the differences between them and descriptions of performance (hydrodynamics and aerodynamics). Readers will find a comprehensive overview of the design, development and building of HPMVs. In summary, this book: Focuses on technology at the aero-marine interface Covers the full range of high performance marine vessel concepts Explains the historical development of various HPMVs Discusses ferries, racing and pleasure craft, as well as utility and military missions High Performance Marine Vessels is an ideal book for student...

Tritium in the Savannah River estuary and adjacent marine waters

International Nuclear Information System (INIS)

Hayes, D.W.

1979-01-01

The tritium distribution in the Savannah River estuary and adjacent marine waters was measured to provide information on the dilution, mixing and movement of Savannah River water in this region. The Savannah River marine region was chosen because the average tritium concentration in this river is approximately 5 pCi/ml, whereas other rivers in the southeastern United States of America average less than 0.5 pCi/ml. The increased tritium concentration in the Savannah River is due to releases from the Savannah River Plant of the Department of Energy. Tritium measurements have proved particularly effective in estimating the flushing time of the Savannah River estuary (2.4 days) and in delineating the relative contribution to the water masses in Ossabaw and Port Royal Sounds from the river and from sea-water. Ossabaw and Port Royal Sounds are located approximately 20 km south and north of the Savannah River estuary respectively. (author)

76 FR 12070 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2011-03-04

... Energy's EROS operations in 2010: Marine mammals Biological impacts Company Structure Dates sighted... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

77 FR 45341 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2012-07-31

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...). SUMMARY: In accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations...

77 FR 16539 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2012-03-21

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...). SUMMARY: In accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations...

78 FR 22517 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2013-04-16

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...). SUMMARY: In accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations...

75 FR 31423 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2010-06-03

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...: In accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification...

78 FR 13865 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2013-03-01

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...). SUMMARY: In accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations...

77 FR 39485 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2012-07-03

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...). SUMMARY: In accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations...

Identification of genomic regions conferring drought tolerance in bread wheat using ISSR markers

International Nuclear Information System (INIS)

Maqsood, R.; Khaliq, I.; Amjid, M.W.

2017-01-01

Drought stress is one of ever escalating and disastrous situation for plantadaptations under changing climate. Quantitative Trait Loci (QTL) analysis was done to identify chromosomal locations containing QTLs for photosynthetic rate, relative water content and cell membrane stability under drought stress conditions. An F2 population was developed from an intraspecific cross between a drought tolerant genotype (Chakawal-50) and a drought susceptible genotype (9436) of Triticum aestivum. A total of 30 ISSR markers were used to screen both parents. Only 4 ISSR markers were found polymorphic which were used to score 180 F2 plants. A total of 73 bands produced were found polymorphic from these 4 markers using capillary electrophoresis. One QTL was found linked to Photosynthetic rate on chromosome 3A, one to relative water contents on chromosome 4D and one to cell membrane thermo-stability on chromosome 2B, respectively. As these traits were also positively correlated with thousand grain weight, so indirectly these QTLs might improve plant yield under limited water conditions. Therefore, these QTLs may be used through marker assisted selection while breeding wheat under limited water conditions. (author)

77 FR 50289 - Taking and Importing Marine Mammals: Taking Marine Mammals Incidental to U.S. Navy Operations of...

Science.gov (United States)

2012-08-20

... areas of high marine animal densities, we believe that the incidental take of marine mammals would... response, tagging of free-ranging marine animals at-sea, and radar-based detection of marine mammals from... effects of sonar use will not be greater on animals listed under the ESA than the effects on other marine...

Implementation of marine spatial planning in shellfish aquaculture management: modeling studies in a Norwegian fjord.

Science.gov (United States)

Filgueira, Ramon; Grant, Jon; Strand, Øivind

2014-06-01

Shellfish carrying capacity is determined by the interaction of a cultured species with its ecosystem, which is strongly influenced by hydrodynamics. Water circulation controls the exchange of matter between farms and the adjacent areas, which in turn establishes the nutrient supply that supports phytoplankton populations. The complexity of water circulation makes necessary the use of hydrodynamic models with detailed spatial resolution in carrying capacity estimations. This detailed spatial resolution also allows for the study of processes that depend on specific spatial arrangements, e.g., the most suitable location to place farms, which is crucial for marine spatial planning, and consequently for decision support systems. In the present study, a fully spatial physical-biogeochemical model has been combined with scenario building and optimization techniques as a proof of concept of the use of ecosystem modeling as an objective tool to inform marine spatial planning. The object of this exercise was to generate objective knowledge based on an ecosystem approach to establish new mussel aquaculture areas in a Norwegian fjord. Scenario building was used to determine the best location of a pump that can be used to bring nutrient-rich deep waters to the euphotic layer, increasing primary production, and consequently, carrying capacity for mussel cultivation. In addition, an optimization tool, parameter estimation (PEST), was applied to the optimal location and mussel standing stock biomass that maximize production, according to a preestablished carrying capacity criterion. Optimization tools allow us to make rational and transparent decisions to solve a well-defined question, decisions that are essential for policy makers. The outcomes of combining ecosystem models with scenario building and optimization facilitate planning based on an ecosystem approach, highlighting the capabilities of ecosystem modeling as a tool for marine spatial planning.

The Effects of Ilkhanid's Marine Policy on International Trade at the end of Middle Ages

Directory of Open Access Journals (Sweden)

ahmad fazlinejad

2016-03-01

Full Text Available The access to seas and high seas was one of the significant concerns of Iranian government's foreign policy during history. The geographical position of Iran- located two seas in north and south of it- provided a golden opportunity for Iranian government to have the influential role in international trade and protection of national security. Ilkhanid government settled in a land which lying from Oxus in east to Euphrates in west and from southern coasts of Black sea in north to Persian Gulf in south. By employing marine policy in commercial relations, Ilkhanid government played a substantial role in international trade during middle Ages. The factors of Ilkhanid's marine trade were based on dominance over Caucasus and election of Azarbayejan district as capital, sovereignty over Mesopotamia in order to control Red Sea and Indian Ocean and also influence over Anatolia and Asia Minor in order to control the southern ports of Black Sea. This marine policy had some considerable consequences such as control of commercial routes between East and West, Competition with Golden Horde and Mamalik government, relations with commercial government of Mediterranean districts and inauguration of commercial road of Tabriz to Hormoz and from Hormoz to Indian Ocean and China Sea which was regarded to be a significant event in international trade history. This research investigates the role of Ilkhanid's marine policy in changes of marine trades between East and West. The outcome of such research demonstrates that Ilkhanid government not only resisted against local marine and its rivals but also had the effective role in connection of marine trade districts of Mediterranean, Black Sea and Indian Ocean.

BONE MARKERS IN MONITORING OF ANTIRESORPTIVE THERAPY IN POSTMENOPAUSAL OSTEOPOROSIS PATIENTS

Directory of Open Access Journals (Sweden)

Tanja Džopalić

2015-09-01

Full Text Available The aim of this work was to study the effect of two modalities of antiosteoporotic therapy in postmenopausal women at the level of biochemical markers of bone turnover such as bone specific alkaline phosphatase (BALP and deoxypiridinoline (Dpd as well as bone mineral density (BMD. The study included 87 patients with postmenopausal osteoporosis (OP. Group A consisted of 48 patients treated with alendronate (AL, whereas group B included 39 patients treated with hormone replacement therapy (HRT. BMD was measured by Lunar DPX 2000 device, on the lumbar spine and the femur, and bone markers (BM were measured by commercial ELISA assays. There was a statistically significant decrease in the levels of BALP and Dpd after 6 weeks and 8 months of both types of therapy compared to the level of these markers before therapy. There was a statistically significant increase of BMD on both locations after 8 months of both therapies. In addition, there was a statistically significantly higher degree of changes of Dpd values in the group treated with AL than in the group treated with HRT. On the other hand, the changes in the level of BALP were significantly higher in the group treated with HRT. We concluded that the early effect of the two studied antiosteoporotic medications can be monitored by changes in the levels of BM. Dpd as bone resorption marker proved to be a better indicator of the efficiency of applied medications compared to bone formation markers such as BALP.

75 FR 972 - Nomination of Existing Marine Protected Areas to the National System of Marine Protected Areas

Science.gov (United States)

2010-01-07

... Marine Protected Areas to the National System of Marine Protected Areas AGENCY: NOAA, Department of... Federal, State and territorial marine protected area programs to join the National System of Marine Protected Areas. SUMMARY: NOAA and the Department of the Interior (DOI) invited Federal, State, commonwealth...

76 FR 35856 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2011-06-20

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

75 FR 8921 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2010-02-26

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

76 FR 33704 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2011-06-09

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

77 FR 10481 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2012-02-22

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

76 FR 23570 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2011-04-27

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

75 FR 28566 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2010-05-21

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

75 FR 54851 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2010-09-09

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

75 FR 38078 - Incidental Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal...

Science.gov (United States)

2010-07-01

... Taking of Marine Mammals; Taking of Marine Mammals Incidental to the Explosive Removal of Offshore Structures in the Gulf of Mexico AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... accordance with the Marine Mammal Protection Act (MMPA) and implementing regulations, notification is hereby...

Enzymatic Processes in Marine Biotechnology.

Science.gov (United States)

Trincone, Antonio

2017-03-25

In previous review articles the attention of the biocatalytically oriented scientific community towards the marine environment as a source of biocatalysts focused on the habitat-related properties of marine enzymes. Updates have already appeared in the literature, including marine examples of oxidoreductases, hydrolases, transferases, isomerases, ligases, and lyases ready for food and pharmaceutical applications. Here a new approach for searching the literature and presenting a more refined analysis is adopted with respect to previous surveys, centering the attention on the enzymatic process rather than on a single novel activity. Fields of applications are easily individuated: (i) the biorefinery value-chain, where the provision of biomass is one of the most important aspects, with aquaculture as the prominent sector; (ii) the food industry, where the interest in the marine domain is similarly developed to deal with the enzymatic procedures adopted in food manipulation; (iii) the selective and easy extraction/modification of structurally complex marine molecules, where enzymatic treatments are a recognized tool to improve efficiency and selectivity; and (iv) marine biomarkers and derived applications (bioremediation) in pollution monitoring are also included in that these studies could be of high significance for the appreciation of marine bioprocesses.

75 FR 72655 - Marine Sanitation Device Discharge Regulations for the Florida Keys National Marine Sanctuary

Science.gov (United States)

2010-11-26

... National Marine Sanctuary AGENCY: Office of National Marine Sanctuaries (ONMS), National Oceanic and... the regulations for the Florida Keys National Marine Sanctuary (FKNMS or sanctuary) by eliminating the exemption that allows discharges from within the boundary of the sanctuary of biodegradable effluent...

Suitability Analysis For Scuba Diving To Develop Marine Tourism At Saebus Island, East Java, Indonesia

Science.gov (United States)

Wijaya, Putranto; Putra, Tri; Hidayat, Fatra; Levraeni, Chandra; Rizmaadi, Mada; Ambariyanto, Ambariyanto

2018-02-01

Indonesian government currently has policies to improve the performance of the tourism sector, including marine tourism. One of the attractions of marine tourism is the coral ecosystem especially through scuba diving activities. The purpose of this study was to determine the suitability of the coral ecosystem on Saebus Island, East Java, to find appropriate locations for scuba diving activities. Purposive samplings were done around the island to determine four stations which will be assessed through suitability analysis. Tourism Suitability Index was used to assess all stations for scuba diving activities. The result showed that all four stations were categorized as very suitable with the score: 85%, 85%, 85% and 83%, respectively. Several aspects that need to be improved and anticipated for diving at all stations are coral coverage and water current. These results suggest that there are several spots around Saebus Island that are suitable for diving site, and can be promoted as marine tourism destination.

Prevalence of marine debris in marine birds from the North Atlantic.

Science.gov (United States)

Provencher, Jennifer F; Bond, Alexander L; Hedd, April; Montevecchi, William A; Muzaffar, Sabir Bin; Courchesne, Sarah J; Gilchrist, H Grant; Jamieson, Sarah E; Merkel, Flemming R; Falk, Knud; Durinck, Jan; Mallory, Mark L

2014-07-15

Marine birds have been found to ingest plastic debris in many of the world's oceans. Plastic accumulation data from necropsies findings and regurgitation studies are presented on 13 species of marine birds in the North Atlantic, from Georgia, USA to Nunavut, Canada and east to southwest Greenland and the Norwegian Sea. Of the species examined, the two surface plungers (great shearwaters Puffinus gravis; northern fulmars Fulmarus glacialis) had the highest prevalence of ingested plastic (71% and 51%, respectively). Great shearwaters also had the most pieces of plastics in their stomachs, with some individuals containing as many of 36 items. Seven species contained no evidence of plastic debris. Reporting of baseline data as done here is needed to ensure that data are available for marine birds over time and space scales in which we see changes in historical debris patterns in marine environments (i.e. decades) and among oceanographic regions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Techniques employed for detection of hot particles in the marine environment

International Nuclear Information System (INIS)

Pillsbury, G D

2007-01-01

During the decommissioning of the Maine Yankee nuclear plant, several methods were developed and employed to survey for hot particles in the marine environment surrounding the site. The methods used and the sensitivities achieved in the search for environmentally dispersed particles during the various decommissioning activities performed are described in detail. Surveys were performed on dry soil, exposed marine sediment and submerged marine sediment. Survey techniques ranged from the use of the basic NaI detector coupled to a count rate meter to an intrinsic germanium detector deployed in a submarine housing coupled to a multi-channel analyser. The initial surveys consisted of collecting samples of marine sediment, spreading them out over a 1 m 2 surface in a thin layer, and scanning the deposited sediment by hand using a 5 cm by 5 cm NaI detector coupled to a standard count rate meter. This technique was later replaced by walkover scans with the 5 cm by 5 cm NaI detector moved in a serpentine pattern over the sediment surface. By coupling the detector to a 'smart meter', an alarm set point could be used to alert the surveyor to the presence of a particle within the instrument's field of view. A similar technique, with the detector mounted in a watertight housing secured to the end of a pole, was also employed to scan underwater locations. The most sensitive method developed for performing underwater surveys was the use of the intrinsic germanium detector placed in a submarine housing. Detailed descriptions of the methods employed and the results obtained are presented. This work demonstrates that there are several approaches to surveying for discrete particles in the marine environment and the relative merits of each are considered

Coexistence dilemmas in European marine spatial planning practices. The case of marine renewables and marine protected areas

International Nuclear Information System (INIS)

Kyriazi, Zacharoula; Maes, Frank; Degraer, Steven

2016-01-01

The question whether coexistence of marine renewable energy (MRE) projects and marine protected areas (MPAs) is a common spatial policy in Europe and how a number of factors can affect it, has been addressed by empirical research undertaken in eleven European marine areas. Policy drivers and objectives that are assumed to affect coexistence, such as the fulfillment of conservation objectives and the prioritization of other competing marine uses, were scored by experts and predictions were crosschecked with state practice. While in most areas MRE-MPA coexistence is not prohibited by law, practice indicates resistance towards it. Furthermore expert judgment demonstrated that a number of additional factors, such as the lack of suitable space for MRE projects and the uncertainty about the extent of damage by MRE to the MPA, might influence the intentions of the two major parties involved (i.e. the MRE developer and the MPA authority) to pursue or avoid coexistence. Based on these findings, the interactions of these two players are further interpreted, their policy implications are discussed, while the need towards efficient, fair and acceptable MRE-MPA coexistence is highlighted.

Bioprospecting Marine Plankton

Directory of Open Access Journals (Sweden)

Chris Bowler

2013-11-01

Full Text Available The ocean dominates the surface of our planet and plays a major role in regulating the biosphere. For example, the microscopic photosynthetic organisms living within provide 50% of the oxygen we breathe, and much of our food and mineral resources are extracted from the ocean. In a time of ecological crisis and major changes in our society, it is essential to turn our attention towards the sea to find additional solutions for a sustainable future. Remarkably, while we are overexploiting many marine resources, particularly the fisheries, the planktonic compartment composed of zooplankton, phytoplankton, bacteria and viruses, represents 95% of marine biomass and yet the extent of its diversity remains largely unknown and underexploited. Consequently, the potential of plankton as a bioresource for humanity is largely untapped. Due to their diverse evolutionary backgrounds, planktonic organisms offer immense opportunities: new resources for medicine, cosmetics and food, renewable energy, and long-term solutions to mitigate climate change. Research programs aiming to exploit culture collections of marine micro-organisms as well as to prospect the huge resources of marine planktonic biodiversity in the oceans are now underway, and several bioactive extracts and purified compounds have already been identified. This review will survey and assess the current state-of-the-art and will propose methodologies to better exploit the potential of marine plankton for drug discovery and for dermocosmetics.

Freshwater savings from marine protein consumption

International Nuclear Information System (INIS)

Gephart, Jessica A; Pace, Michael L; D’Odorico, Paolo

2014-01-01

Marine fisheries provide an essential source of protein for many people around the world. Unlike alternative terrestrial sources of protein, marine fish production requires little to no freshwater inputs. Consuming marine fish protein instead of terrestrial protein therefore represents freshwater savings (equivalent to an avoided water cost) and contributes to a low water footprint diet. These water savings are realized by the producers of alternative protein sources, rather than the consumers of marine protein. This study quantifies freshwater savings from marine fish consumption around the world by estimating the water footprint of replacing marine fish with terrestrial protein based on current consumption patterns. An estimated 7 600 km 3  yr −1 of water is used for human food production. Replacing marine protein with terrestrial protein would require an additional 350 km 3  yr −1 of water, meaning that marine protein provides current water savings of 4.6%. The importance of these freshwater savings is highly uneven around the globe, with savings ranging from as little as 0 to as much as 50%. The largest savings as a per cent of current water footprints occur in Asia, Oceania, and several coastal African nations. The greatest national water savings from marine fish protein occur in Southeast Asia and the United States. As the human population increases, future water savings from marine fish consumption will be increasingly important to food and water security and depend on sustainable harvest of capture fisheries and low water footprint growth of marine aquaculture. (paper)

Chromosomal locations of four minor rDNA loci and a marker microsatellite sequence in barley

DEFF Research Database (Denmark)

Pedersen, C.; Linde-Laursen, I.

1994-01-01

is located about 54% out on the short arm of chromosome 4 and it has not previously been reported in barley. We have designated the new locus Nor-I6. rDNA loci on homoeologous group 4 chromosomes have not yet been reported in other Triticeae species. The origin of these 4 minor rDNA loci is discussed...

Effect of pollution on diversity of marine gastropods and its role in trophic structure at Nasese Shore, Suva, Fiji Islands

Directory of Open Access Journals (Sweden)

Dissanayake Mudiyanselage Suratissa

2017-06-01