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Sample records for lrp-rap complex implications

  1. Binding site structure of one LRP-RAP complex: implications for a common ligand-receptor binding motif

    DEFF Research Database (Denmark)

    Jensen, Gitte A; Andersen, Olav M; Bonvin, Alexandre M J J

    2006-01-01

    domains of RAP and alpha2-macroglobulin, which promotes the catabolism of the Abeta-peptide implicated in Alzheimer's disease. To understand the receptor-ligand cross-talk, the NMR structure of CR56 has been solved and ligand binding experiments with RAP domain 1 (RAPd1) have been performed. From chemical...

  2. Complexities of Teaching and Implications for Equity

    Science.gov (United States)

    Lee, Carol D.

    2011-01-01

    Teacher knowledge involves a complex network of inter-related domains, including cognition; differences in learning strengths for primary and secondary school students; social and emotional development across the life course; motivation; language acquisition and socialization; curriculum design and assessment; and classroom management. In…

  3. Implication of Abduction: Complexity without Organized Interaction

    Science.gov (United States)

    Kamiura, Moto

    2010-11-01

    interaction between their elements. On the other hand, power law distribution which is derived from the incomplete parameter estimation and the linearity bias is not based on a mechanism of system itself but on relationship between data on the system and observer of the data. Consequently, our research suggests that complexity expressed by a power law distribution can be derived from the incomplete parameter estimation which is a numerical aspect of abduction and is different from SOC mechanisms.

  4. Causal-implicative relationships in the Serbian hypotaxis (Complex of generative complex sentences

    Directory of Open Access Journals (Sweden)

    Vojvodić Dojčil P.

    2015-01-01

    Full Text Available The paper analyzes the causal-implicative relationships in the segmented complex sentences with a “closed” (asymmetric, mandatory bi-situational generative (conditional semantic structure on the corpus of the Serbian language. The generative (conditional semantic structure consists of meaningfully interconnected antecedents and consequents that are based on the principle of subordination. These sentences are characterized with a general causal link due to the specific implicative relationship between the segments that can be realized within dependent clauses with diverse categorically-differential semantics (i.e. causal, consecutive, final, conditional and concessive. The author reaches a conclusion that the given implicative relationships (P ⇒ Q, P ⇐ Q/Q ⇒ P, P ⇔Q, P ⇒ Q´ Δ P´ ⇒ Q represent, in fact, semantic invariants of generative complex sentences. It is pointed out that the structure, formation and functioning of these relationships (sentences are always determined by the interconnectedness of syntax and lexicon. They are based on a general causal adverbial meaning of the conjunctions in a subordinate clause, which are also used to determine the adverbial semantics of a sentence as a whole. The article discusses in particular the aspectual-temporal correlations that are realized in complex sentences with a generative structure. It has been noted very often in the literature that there is no differentiation made among all of the types of the hypothetical conditionality - real, eventual, potential and unreal. The paper analyzes taxis of simultaneity and succession (anteriority/posteriority of the main and subordinate clause predicates in conditional sentences as a special type of the relative-temporal relationships within the same temporal plan. In order to interpret these correlations, the Serbian data was compared to the data in Russian and Polish. It is noted that the Northern Slavic languages (in this case Russian and

  5. Linking Complexity and Sustainability Theories: Implications for Modeling Sustainability Transitions

    Directory of Open Access Journals (Sweden)

    Camaren Peter

    2014-03-01

    Full Text Available In this paper, we deploy a complexity theory as the foundation for integration of different theoretical approaches to sustainability and develop a rationale for a complexity-based framework for modeling transitions to sustainability. We propose a framework based on a comparison of complex systems’ properties that characterize the different theories that deal with transitions to sustainability. We argue that adopting a complexity theory based approach for modeling transitions requires going beyond deterministic frameworks; by adopting a probabilistic, integrative, inclusive and adaptive approach that can support transitions. We also illustrate how this complexity-based modeling framework can be implemented; i.e., how it can be used to select modeling techniques that address particular properties of complex systems that we need to understand in order to model transitions to sustainability. In doing so, we establish a complexity-based approach towards modeling sustainability transitions that caters for the broad range of complex systems’ properties that are required to model transitions to sustainability.

  6. A Complex Systems View of Sepsis: Implications for Nursing

    Science.gov (United States)

    2013-02-01

    discreet compo- nents, such as differentiated cells, organs, organ systems, and, ultimately, a functioning organism. Interactions be- tween a large...because human beings are considered complex adaptive systems.7 Sepsis Sepsis is not a discreet disease state but is rather a continuum of multifactorial...that may elucidate the complex systems response to sepsis. One approach is applying mathematical modeling to the interpretation of biologic process

  7. Complex and Nonlinear Pedagogy and the Implications for Physical Education

    Science.gov (United States)

    Chow, Jia Yi; Atencio, Matthew

    2014-01-01

    There is increasing support to describe and examine the teaching of game skills in physical education from a complex and nonlinear perspective. The emergence of game behaviours as a consequence of the dynamic interactions of the learner, the game environment and the task constraints within the game context highlights the nonlinear and complex…

  8. Spacecraft Complexity Subfactors and Implications on Future Cost Growth

    Science.gov (United States)

    Leising, Charles J.; Wessen, Randii; Ellyin, Ray; Rosenberg, Leigh; Leising, Adam

    2013-01-01

    During the last ten years the Jet Propulsion Laboratory has used a set of cost-risk subfactors to independently estimate the magnitude of development risks that may not be covered in the high level cost models employed during early concept development. Within the last several years the Laboratory has also developed a scale of Concept Maturity Levels with associated criteria to quantitatively assess a concept's maturity. This latter effort has been helpful in determining whether a concept is mature enough for accurate costing but it does not provide any quantitative estimate of cost risk. Unfortunately today's missions are significantly more complex than when the original cost-risk subfactors were first formulated. Risks associated with complex missions are not being adequately evaluated and future cost growth is being underestimated. The risk subfactor process needed to be updated.

  9. Modeling Uncertainty and Its Implications in Complex Interdependent Networks

    Science.gov (United States)

    2016-04-30

    dual goal of contributing to advances in reasoning about uncertainty, large-scale text and image data analysis , as well as understanding of complex...Resources & Analysis , OUSD (AT&L) Brendan Fernes, Student, The Cooper Union Published April 30, 2016 Approved for public release; distribution is...Acquisition Resources & Analysis , OUSD (AT&L) Brendan Fernes, Student, The Cooper Union An Optimization-Based Approach to Determine System Requirements

  10. Complex genetic origin of Indian populations and its implications

    Indian Academy of Sciences (India)

    Rakesh Tamang; Lalji Singh; Kumarasamy Thangaraj

    2012-11-01

    Indian populations are classified into various caste, tribe and religious groups, which altogether makes them very unique compared to rest of the world. The long-term firm socio-religious boundaries and the strict endogamy practices along with the evolutionary forces have further supplemented the existing high-level diversity. As a result, drawing definite conclusions on its overall origin, affinity, health and disease conditions become even more sophisticated than was thought earlier. In spite of these challenges, researchers have undertaken tireless and extensive investigations using various genetic markers to estimate genetic variation and its implication in health and diseases. We have demonstrated that the Indian populations are the descendents of the very first modern humans, who ventured the journey of out-of-Africa about 65,000 years ago. The recent gene flow from east and west Eurasia is also evident. Thus, this review attempts to summarize the unique genetic variation among Indian populations as evident from our extensive study among approximately 20,000 samples across India.

  11. Genetics of tuberous sclerosis complex: implications for clinical practice

    Science.gov (United States)

    Caban, Carolina; Khan, Nubaira; Hasbani, Daphne M; Crino, Peter B

    2017-01-01

    Tuberous sclerosis complex (TSC) is a multisystem disorder that results from heterozygous mutations in either TSC1 or TSC2. The primary organ systems that are affected include the brain, skin, lung, kidney, and heart, all with variable frequency, penetrance, and severity. Neurological features include epilepsy, autism, and intellectual disability. There are more than 1,500 known pathogenic variants for TSC1 and TSC2, including deletion, nonsense, and missense mutations, and all pathogenic mutations are inactivating, leading to loss of function effects on the encoded proteins TSC1 and TSC2. These proteins form a complex to constitutively inhibit mechanistic target of rapamycin (mTOR) signaling cascade, and as a consequence, mTOR signaling is constitutively active within all TSC-associated lesions. The mTOR inhibitors rapamycin (sirolimus) and everolimus have been shown to reduce the size of renal and brain lesions and improve pulmonary function in TSC, and these compounds may also decrease seizure frequency. The clinical application of mTOR inhibitors in TSC has provided one of the first examples of precision medicine in a neurodevelopmental disorder. PMID:28053551

  12. Genetics of tuberous sclerosis complex: implications for clinical practice

    Directory of Open Access Journals (Sweden)

    Caban C

    2016-12-01

    Full Text Available Carolina Caban,1,2 Nubaira Khan,1,2 Daphne M Hasbani,3 Peter B Crino1,2 1Department of Neurology, 2Shriners Hospitals Pediatric Research Center, Temple University School of Medicine, 3Department of Neurology, St. Christopher’s Hospital for Children, Drexel University College of Medicine, Philadelphia, PA, USA Abstract: Tuberous sclerosis complex (TSC is a multisystem disorder that results from heterozygous mutations in either TSC1 or TSC2. The primary organ systems that are affected include the brain, skin, lung, kidney, and heart, all with variable frequency, penetrance, and severity. Neurological features include epilepsy, autism, and intellectual disability. There are more than 1,500 known pathogenic variants for TSC1 and TSC2, including deletion, nonsense, and missense mutations, and all pathogenic mutations are inactivating, leading to loss of function effects on the encoded proteins TSC1 and TSC2. These proteins form a complex to constitutively inhibit mechanistic target of rapamycin (mTOR signaling cascade, and as a consequence, mTOR signaling is constitutively active within all TSC-associated lesions. The mTOR inhibitors rapamycin (sirolimus and everolimus have been shown to reduce the size of renal and brain lesions and improve pulmonary function in TSC, and these compounds may also decrease seizure frequency. The clinical application of mTOR inhibitors in TSC has provided one of the first examples of precision medicine in a neurodevelopmental disorder. Keywords: TSC, epilepsy, genetics, mTOR, rapamycin

  13. A retrospective study of phonetic inventory complexity in acquisition of Spanish: implications for phonological universals.

    Science.gov (United States)

    Cataño, Lorena; Barlow, Jessica A; Moyna, María Irene

    2009-06-01

    This study evaluates 39 different phonetic inventories of 16 Spanish-speaking children (ages 0;11 to 5;1) in terms of hierarchical complexity. Phonetic featural differences are considered in order to evaluate the proposed implicational hierarchy of Dinnsen et al.'s phonetic inventory typology for English. The children's phonetic inventories are examined independently and in relation to one another. Five hierarchical complexity levels are proposed, similar to those of English and other languages, although with some language-specific differences. These findings have implications for theoretical assumptions about the universality of phonetic inventory development, and for remediation of Spanish-speaking children with phonological impairments.

  14. Understanding implementation in complex public organizations – implication for practice

    Directory of Open Access Journals (Sweden)

    Gry Cecilie Høiland

    2016-10-01

    Full Text Available The effective implementation of politically initiated public service innovations to the front-lines of the public service organization, where the innovation is to be applied, is a challenge that both practitioners and researchers struggle to solve. We highlight the importance of analysing contextual factors at several levels of the implementation system, as well as the importance of considering how the practical everyday work situations of the front-line workers influence their application of the innovation in question. We illustrate this by exploring the implementation process of a specific work inclusion measure, looking at its wider context and some of its implementation outcomes at a specific public agency. The intention is to illustrate the significance of considering the contextual complexity influencing implementation work as a reminder for practitioners to take this into account in their planning and practices.

  15. Ternary Complexation on Bacterial Surfaces: Implications for Subsurface Anion Transport

    Science.gov (United States)

    Maclean, L. C.; Higginbottom, C. M.; Fowle, D. A.

    2002-12-01

    The physical, chemical, and biological controls on contaminant mobilities in aquatic ecosystems must be determined to establish the threat that contamination poses to the environment. Quantitative models of contaminant mobilities are required as a prerequisite to guide remediation efforts and to prioritize the potential hazard to the ecosystem of each contaminated site. It is well established that mineral surface adsorption is an important control on contaminant mobilities, and many studies have utilized thermodynamics to quantify metal/organic adsorption in order to yield predictive models of contaminant transport. However, these models of contaminant transport may not be representative of the reactions which control contaminant mobilities as most mineral surfaces are coated with organic acids, bacteria, and extracellular polymers. Numerous laboratory studies have demonstrated that bacterial cell walls have a high affinity for binding metal cations, and field studies indicate that a significant proportion of bacteria cells and associated extracellular matrices are coated with small scale hydrous metal oxides. The small size of bacteria, and in many cases the nanoscale of their associated mineral phases, suggests these bacteria-mineral composites may represent a large proportion of surface area exposed to fluid flow. Therefore, due to the affinity of bacterial cell walls for cations and biominerals, bacteria may also have a significant impact on anionic contaminant mobility in many natural systems. The extent of metal-bacteria adsorption reactions varies drastically as a function of pH and solution chemistry. Current adsorption models have focused on the interactions of positively charged metal cations with bacterial surfaces, however in many oxidizing environments metals such as Cr exist as anions or anionic complexes. We have studied the ability of non-metabolizing cells of the bacterial species Bacillus subtilis and Shewanella putrifaciens to adsorb aqueous Cr

  16. A Retrospective Study of Phonetic Inventory Complexity in Acquisition of Spanish: Implications for Phonological Universals

    Science.gov (United States)

    Catano, Lorena; Barlow, Jessica A.; Moyna, Maria Irene

    2009-01-01

    This study evaluates 39 different phonetic inventories of 16 Spanish-speaking children (ages 0;11 to 5;1) in terms of hierarchical complexity. Phonetic featural differences are considered in order to evaluate the proposed implicational hierarchy of Dinnsen et al.'s phonetic inventory typology for English. The children's phonetic inventories are…

  17. A Retrospective Study of Phonetic Inventory Complexity in Acquisition of Spanish: Implications for Phonological Universals

    Science.gov (United States)

    Catano, Lorena; Barlow, Jessica A.; Moyna, Maria Irene

    2009-01-01

    This study evaluates 39 different phonetic inventories of 16 Spanish-speaking children (ages 0;11 to 5;1) in terms of hierarchical complexity. Phonetic featural differences are considered in order to evaluate the proposed implicational hierarchy of Dinnsen et al.'s phonetic inventory typology for English. The children's phonetic inventories are…

  18. The Response of the Shoulder Complex to Repetitive Work: Implications for Workplace Design.

    Science.gov (United States)

    McDonald, Alison C; Keir, Peter J

    2015-01-01

    The shoulder complex has multiple degrees of freedom and muscular geometry that make it possible to complete tasks with many different kinematic and muscular strategies. Substantial research has investigated the effects of workplace factors (posture and task design) on the shoulder complex. The interactive relationships between workplace factors, however, make it challenging to synthesize the literature to make decisive conclusions regarding the impact of repetitive work. This review summarizes a broad selection of the literature examining the effects of repetitive work on the shoulder complex with respect to kinematic and muscular adaptation strategies to maintain task performance with muscular fatigue. The implications of repetitive work and workplace design on the shoulder complex are discussed.

  19. The Implication of Chaos/Complexity Theory into Second Language Acquisition

    Directory of Open Access Journals (Sweden)

    Minoo Alemi

    2011-05-01

    Full Text Available With the advances in Quantum physics and meteorology, science has moved towards more uncertainty and unpredictability (Larsen-Freeman, 2002 [12]. This has resulted in the emergence of Chaos/Complexity Science (Valle, 2000 [20], or Theory (Larsen-Freeman, 1997 [11], and Dynamic System Theory (De Bot, Lowie, & Verspoor, 2007 [3]. As Larsen-Freeman (1997 [11] states the name of chaos/complexity science is paradoxical terminology in that the word science means order as well as complexity but in Ch/C this complexity is achieved through chaotic situation. In science we are searching for cause and effect connection while in Ch/C such a connection is not that much straightforward. Efforts have been invested to apply the concept into Second Language Acquisition (SLA (Larsen-Freeman, 1997 [11] due to incommensurable issues in SLA Larsen-Freeman (1997 [11], especially, introduced the concept into SLA in detail, however, we think more works and speculations on the topic are required on all aspects which are related to SLA. To this end, this article is a critical review of the implication of Chaos/Complexity theory into SLA from three perspectives: the Nature of Language Complexity, SLA Incommensurable Theories, and the Complex Nature of Classroom.

  20. Added syllable complexity in a child's developmental speech and clinical implications.

    Science.gov (United States)

    Babatsouli, Elena

    2016-01-01

    Added syllable complexity, whereby a non-targeted consonant is added next to a targeted consonant in the syllable, has received relatively little attention in studies of children with speech sound disorders (SSD) and typically developing children. Despite the scarcity and subtlety of the pattern, evidence in child and adult data indicates universality. The present article examines the pattern in a bilingual child's longitudinal speech in English from age 2;7 to 4;0, focusing on word-initial consonant addition. The purpose is to identify phonological and psycholinguistic processes associated with the pattern. It is suggested that the complexity pattern with both legal and illegal outputs is a systemic developmental behaviour linked to the child's level of phonological acquisition, facilitating acquisition of the complex CCV rule as well as of non-acquired singleton consonants. Implications of the results for children's SSD intervention techniques and for adult degenerative speech are discussed.

  1. Insect-Like Organization of the Stomatopod Central Complex: Functional and Phylogenetic Implications

    Science.gov (United States)

    Thoen, Hanne H.; Marshall, Justin; Wolff, Gabriella H.; Strausfeld, Nicholas J.

    2017-01-01

    One approach to investigating functional attributes of the central complex is to relate its various elaborations to pancrustacean phylogeny, to taxon-specific behavioral repertoires and ecological settings. Here we review morphological similarities between the central complex of stomatopod crustaceans and the central complex of dicondylic insects. We discuss whether their central complexes possess comparable functional properties, despite the phyletic distance separating these taxa, with mantis shrimp (Stomatopoda) belonging to the basal branch of Eumalacostraca. Stomatopods possess the most elaborate visual receptor system in nature and display a fascinating behavioral repertoire, including refined appendicular dexterity such as independently moving eyestalks. They are also unparalleled in their ability to maneuver during both swimming and substrate locomotion. Like other pancrustaceans, stomatopods possess a set of midline neuropils, called the central complex, which in dicondylic insects have been shown to mediate the selection of motor actions for a range of behaviors. As in dicondylic insects, the stomatopod central complex comprises a modular protocerebral bridge (PB) supplying decussating axons to a scalloped fan-shaped body (FB) and its accompanying ellipsoid body (EB), which is linked to a set of paired noduli and other recognized satellite regions. We consider the functional implications of these attributes in the context of stomatopod behaviors, particularly of their eyestalks that can move independently or conjointly depending on the visual scene. PMID:28223924

  2. Insect-Like Organization of the Stomatopod Central Complex: Functional and Phylogenetic Implications.

    Science.gov (United States)

    Thoen, Hanne H; Marshall, Justin; Wolff, Gabriella H; Strausfeld, Nicholas J

    2017-01-01

    One approach to investigating functional attributes of the central complex is to relate its various elaborations to pancrustacean phylogeny, to taxon-specific behavioral repertoires and ecological settings. Here we review morphological similarities between the central complex of stomatopod crustaceans and the central complex of dicondylic insects. We discuss whether their central complexes possess comparable functional properties, despite the phyletic distance separating these taxa, with mantis shrimp (Stomatopoda) belonging to the basal branch of Eumalacostraca. Stomatopods possess the most elaborate visual receptor system in nature and display a fascinating behavioral repertoire, including refined appendicular dexterity such as independently moving eyestalks. They are also unparalleled in their ability to maneuver during both swimming and substrate locomotion. Like other pancrustaceans, stomatopods possess a set of midline neuropils, called the central complex, which in dicondylic insects have been shown to mediate the selection of motor actions for a range of behaviors. As in dicondylic insects, the stomatopod central complex comprises a modular protocerebral bridge (PB) supplying decussating axons to a scalloped fan-shaped body (FB) and its accompanying ellipsoid body (EB), which is linked to a set of paired noduli and other recognized satellite regions. We consider the functional implications of these attributes in the context of stomatopod behaviors, particularly of their eyestalks that can move independently or conjointly depending on the visual scene.

  3. Implications for Diverse Functions of the LINC Complexes Based on the Structure

    Directory of Open Access Journals (Sweden)

    Miki Hieda

    2017-01-01

    Full Text Available The linker of nucleoskeleton and cytoskeleton (LINC complex is composed of the outer and inner nuclear membrane protein families Klarsicht, Anc-1, and Syne homology (KASH, and Sad1 and UNC-84 (SUN homology domain proteins. Increasing evidence has pointed to diverse functions of the LINC complex, such as in nuclear migration, nuclear integrity, chromosome movement and pairing during meiosis, and mechanotransduction to the genome. In metazoan cells, the nuclear envelope possesses the nuclear lamina, which is a thin meshwork of intermediate filaments known as A-type and B-type lamins and lamin binding proteins. Both of lamins physically interact with the inner nuclear membrane spanning SUN proteins. The nuclear lamina has also been implicated in various functions, including maintenance of nuclear integrity, mechanotransduction, cellular signalling, and heterochromatin dynamics. Thus, it is clear that the LINC complex and nuclear lamins perform diverse but related functions. However, it is unknown whether the LINC complex–lamins interactions are involved in these diverse functions, and their regulation mechanism has thus far been elusive. Recent structural analysis suggested a dynamic nature of the LINC complex component, thus providing an explanation for LINC complex organization. This review, elaborating on the integration of crystallographic and biochemical data, helps to integrate this research to gain a better understanding of the diverse functions of the LINC complex.

  4. Nomenclatural instability in the venomous snakes of the Bothrops complex: Implications in toxinology and public health.

    Science.gov (United States)

    Carrasco, Paola Andrea; Venegas, Pablo Javier; Chaparro, Juan Carlos; Scrocchi, Gustavo José

    2016-09-01

    Since nomenclature is intended to reflect the evolutionary history of organisms, advances in our understanding of historical relationships may lead to changes in classification, and thus potentially in taxonomic instability. An unstable nomenclature for medically important animals like venomous snakes is of concern, and its implications in venom/antivenom research and snakebite treatment have been extensively discussed since the 90´s. The taxonomy of the pitvipers of the Bothrops complex has been historically problematic and different genus-level rearrangements were proposed to rectify the long-standing paraphyly of the group. Here we review the toxinological literature on the Bothrops complex to estimate the impact of recent proposals of classification in non-systematic research. This assessment revealed moderate levels of nomenclatural instability in the last five years, and the recurrence of some practices discussed in previous studies regarding the use of classifications and the information provided about the origin of venom samples. We briefly comment on a few examples and the implications of different proposals of classifications for the Bothrops complex. The aim of this review is to contribute to the reduction of adverse effects of current taxonomic instability in a group of medical importance in the Americas.

  5. Five schools of thought about complexity: Implications for design and process science

    Energy Technology Data Exchange (ETDEWEB)

    Warfield, J.N. [George Mason Univ., Fairfax, VA (United States)

    1996-12-31

    The prevalence of complexity is a fact of life in virtually all aspects of system design today. Five schools of thought concerning complexity seem to be present in areas where people strive to gain more facility with difficult issues: (1) Interdisciplinary or Cross-Disciplinary {open_quotes}approaches{close_quotes} or {open_quotes}methods{close_quotes} (fostered by the Association for Integrative Studies, a predominantly liberal-arts faculty activity), (2) Systems Dynamics (fostered by Jay Forrester, Dennis Meadows, Peter Senge, and others closely associated with MIT), (3) Chaos Theory (arising in small groups in many locations), (4) Adaptive Systems Theory (predominantly associated with the Santa Fe Institute), and (5) The Structure-Based school (developed by the author, his colleagues and associates). A comparison of these five schools of thought will be offered, in order to show the implications of them upon the development and application of design and process science. The following criteria of comparison will be used: (a) how complexity is defined, (b) analysis versus synthesis, (c) potential for acquiring practical competence in coping with complexity, and (d) relationship to underlying formalisms that facilitate computer assistance in applications. Through these comparisons, the advantages and disadvantages of each school of thought can be clarified, and the possibilities of changes in the educational system to provide for the management of complexity in system design can be articulated.

  6. The Implication for English Teaching and Study Based on TOE Theory and Jonah Complex

    Institute of Scientific and Technical Information of China (English)

    邬丹

    2012-01-01

      Learning is a complex process which educators want to fully understand. The paper examines two seemingly unrelat⁃ed theories and shows how they are interrelated. The TOE Theory offers a simplified model of how and why we learn but it ignores a little-known common psychological problem—the fear of success. Blending these two theories offers educators an even stronger educational model than either of them alone. The paper concludes that these two theories should be considered by educators and curriculum planners in the process of their work and that students can benefit from an understanding of these theories combined. The implications are that those who teach educational and psychological theories and methods can benefit greatly by viewing these two as a part of one process.

  7. Genetic relationships among members of the Ichthyobodo necator complex: implications for the management of aquaculture stocks.

    Science.gov (United States)

    Callahan, H A; Litaker, R W; Noga, E J

    2005-02-01

    Abstract Ichthyobodo necator (costia) is a common and important flagellate parasite that infests the skin and gills of many freshwater and marine fish. Costia infestations are often fatal and cause significant aquaculture losses worldwide. Recently it has been demonstrated that Ichthyobodo is a multispecies complex with differing host preferences. Knowing if those species have broad or narrow host specificity has important implications for the management of costia. To address the question of host specificity, genomic DNA was isolated from Ichthyobodo trophonts collected from rainbow trout, Oncorhynchus mykiss, koi, Cyprinus carpio, mirror carp, C. carpio, goldfish, Carassius auratus, channel catfish, Ictalurus punctatus, swordtail, Xiphophorus helleri, and Japanese flounder, Paralichthys olivaceus. The small subunit ribosomal RNA (SSU rRNA) gene from each isolate was analysed with previously published Ichthyobodo sequences using Bayesian phylogenetic methods. The internal transcribed spacers (ITS) from six isolates were also PCR-amplified, cloned and sequenced. Both the SSU rRNA phylogenetic analysis and the ITS rRNA sequence data support grouping the 22 Ichthyobodo isolates examined into a complex of nine different species. Many of these species were frequently isolated from multiple hosts, indicating that exchange of infested fish from one region to another has a high potential for spreading the disease. In one instance, the same species was obtained from marine and freshwater fish, further suggesting that certain Ichthyobodo species may not be limited by salinity.

  8. Representing complexity well: a story about teamwork, with implications for how we teach collaboration.

    Science.gov (United States)

    Lingard, Lorelei; McDougall, Allan; Levstik, Mark; Chandok, Natasha; Spafford, Marlee M; Schryer, Catherine

    2012-09-01

    In order to be relevant and impactful, our research into health care teamwork needs to better reflect the complexity inherent to this area. This study explored the complexity of collaborative practice on a distributed transplant team. We employed the theoretical lenses of activity theory to better understand the nature of collaborative complexity and its implications for current approaches to interprofessional collaboration (IPC) and interprofessional education (IPE). Over 4 months, two trained observers conducted 162 hours of observation, 30 field interviews and 17 formal interviews with 39 members of a solid organ transplant team in a Canadian teaching hospital. Participants included consultant medical and surgical staff and postgraduate trainees, the team nurse practitioner, social worker, dietician, pharmacist, physical therapist, bedside nurses, organ donor coordinators and organ recipient coordinators. Data collection and inductive analysis for emergent themes proceeded iteratively. Daily collaborative practice involves improvisation in the face of recurring challenges on a distributed team. This paper focuses on the theme of 'interservice' challenges, which represent instances in which the 'core' transplant team (those providing daily care for transplant patients) work to engage the expertise and resources of other services in the hospital, such as those of radiology and pathology departments. We examine a single story of the core team's collaboration with cardiology, anaesthesiology and radiology services to decide whether a patient is appropriate for transplantation and use this story to consider the team's strategies in the face of conflicting expectations and preferences among these services. This story of collaboration in a distributed team calls into question two premises underpinning current models of IPC and IPE: the notion that stable professional roles exist, and the ideal of a unifying objective of 'caring for the patient'. We suggest important

  9. Frustration and disorder in granular media and tectonic blocks: implications for earthquake complexity

    Directory of Open Access Journals (Sweden)

    A. Sornette

    1994-01-01

    Full Text Available We present exploratory analogies and speculations on the mechanisms underlying the organization of faulting and earthquake in the earth crust. The mechanical properties of the brittle lithosphere at scales of the order or larger than a few kilometers are proposed to be analogous to those of non-cohesive granular media, since both systems present stress amplitudes controlled by gravity, and shear band (faulting localization is determined by a type of friction Mohr-Coulomb rupture criterion. here, we explore the implications of this correspondence with respect to the origin of tectonic and earthquake complexity, on the basis of the existing experimental data on granular media available in the mechanical literature. An important observation is that motions and deformations of non-cohesive granular media are characterized by important fluctuations both in time (sudden breaks, avalanches, which are analogous to earthquakes and space (strain localizations, yield surfaces forming sometimes complex patterns. This is in apparent contradiction with the conventional wisdom in mechanics, based on the standard tendency to homogenize, which has led to dismiss fluctuations as experimental noise. On the basis of a second analogy with spinglasses and neural networks, based on the existence of block and grain packing disorder and block rotation "frustration", we suggest that these fluctuations observed both at large scales and at the block scale constitute an intrinsic signature of the mechanics of granular media. The space-time complexity observed in faulting and earthquake phenomenology is thus proposed to result form the special properties of the mechanics of granular media, dominated by the "frustration" of the kinematic deformations of its constitutive blocks.

  10. Binary thinking in a complex world: the failure of NATO deterrence since 1994 and implications for the NATO readiness action plan.

    Science.gov (United States)

    2017-05-25

    Binary Thinking in a Complex World : The Failure of NATO Deterrence since 1994 and Implications for the NATO Readiness Action Plan. A Monograph by...Binary Thinking in a Complex World : The Failure of NATO Deterrence since 1994 and the Implications for the NATO Readiness Action Plan. 5a. CONTRACT...Approval Page Name of Candidate: Major Andrew Breach Monograph Title: Binary Thinking in a Complex World : The Failure of NATO Deterrence since 1994 and

  11. Electrospray ionization mass spectrometry for the hydrolysis complexes of cisplatin: implications for the hydrolysis process of platinum complexes.

    Science.gov (United States)

    Feifan, Xie; Pieter, Colin; Jan, Van Bocxlaer

    2017-07-01

    Non-enzyme-dependent hydrolysis of the drug cisplatin is important for its mode of action and toxicity. However, up until today, the hydrolysis process of cisplatin is still not completely understood. In the present study, the hydrolysis of cisplatin in an aqueous solution was systematically investigated by using electrospray ionization mass spectrometry coupled to liquid chromatography. A variety of previously unreported hydrolysis complexes corresponding to monomeric, dimeric and trimeric species were detected and identified. The characteristics of the Pt-containing complexes were investigated by using collision-induced dissociation (CID). The hydrolysis complexes demonstrate distinctive and correlative CID characteristics, which provides tools for an informative identification. The most frequently observed dissociation mechanism was sequential loss of NH3 , H2 O and HCl. Loss of the Pt atom was observed as the final step during the CID process. The formation mechanisms of the observed complexes were explored and experimentally examined. The strongly bound dimeric species, which existed in solution, are assumed to be formed from the clustering of the parent compound and its monohydrated or dihydrated complexes. The role of the electrospray process in the formation of some of the observed ions was also evaluated, and the electrospray ionization-related cold clusters were identified. The previously reported hydrolysis equilibria were tested and subsequently refined via a hydrolysis study resulting in a renewed mechanistic equilibrium system of cisplatin as proposed from our results. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

  12. Functional connectivity and complex networks in focal epilepsy. Pathophysiology and therapeutic implications

    National Research Council Canada - National Science Library

    Pastor, Jesús; Sola, Rafael G; Vega-Zelaya, Lorena; Garnes, Óscar; Ortega, Guillermo J

    2014-01-01

    ...-resistant focal epilepsy. In order to fully understand the new developments in the area of complex networks and its applications to the study of epilepsy, we will here review fundamental concepts in complex...

  13. Consumerism and consumer complexity: implications for university teaching and teaching evaluation.

    Science.gov (United States)

    Hall, Wendy A

    2013-07-01

    A contemporary issue is the effects of a corporate production metaphor and consumerism on university education. Efforts by universities to attract students and teaching strategies aimed at 'adult learners' tend to treat student consumers as a homogeneous group with similar expectations. In this paper, I argue that consumer groups are not uniform. I use Dagevos' theoretical approach to categorize consumers as calculating, traditional, unique, and responsible. Based on the characteristics of consumers occupying these categories, I describe the implications of the varying consumer expectations for teaching. I also consider the implications for evaluation of teaching and call for research taking consumer types into account when evaluating teaching.

  14. A human phenome-interactome network of protein complexes implicated in genetic disorders

    DEFF Research Database (Denmark)

    Hansen, Kasper Lage; Karlberg, Erik, Olof, Linnart; Størling, Zenia, Marian

    2007-01-01

    the known disease-causing protein as the top candidate, and in 870 intervals with no identified disease-causing gene, provides novel candidates implicated in disorders such as retinitis pigmentosa, epithelial ovarian cancer, inflammatory bowel disease, amyotrophic lateral sclerosis, Alzheimer disease, type...

  15. Structure and Function of SWI/SNF Chromatin Remodeling Complexes and Mechanistic Implications for Transcription

    OpenAIRE

    Tang, Liling; Nogales, Eva; Ciferri, Claudio

    2010-01-01

    ATP-dependent chromatin remodeling complexes are specialized protein machinery able to restructure the nucleosome to make its DNA accessible during transcription, replication and DNA repair. During the past few years structural biologists have defined the architecture and dynamics of some of these complexes using electron microscopy, shedding light on the mechanisms of action of these important complexes. In this paper we review the existing structural information on the SWI/SNF family of the...

  16. Changes in Reference Question Complexity Following the Implementation of a Proactive Chat System: Implications for Practice

    Science.gov (United States)

    Maloney, Krisellen; Kemp, Jan H.

    2015-01-01

    There has been longstanding debate about whether the level of complexity of questions received at reference desks and via online chat services requires a librarian's expertise. Continued decreases in the number and complexity of reference questions have all but ended the debate; many academic libraries no longer staff service points with…

  17. The Alluvial Fan Complex in Holden Crater: Implications for the Environment of Early Mars

    Science.gov (United States)

    Irwin, R. P.; Grant, J. A.; Howard, A. D.

    2008-03-01

    The alluvial fan complex in Holden crater is the largest deposit of this type on Mars and preserves topographic and sedimentary indicators of its formative environment around the Noachian/Hesperian transition.

  18. Complexation of Manganese with Glutarimidedioxime: Implication for Extraction Uranium from Seawater

    Science.gov (United States)

    Xie, Xiang; Tian, Yin; Qin, Zhen; Yu, Qianhong; Wei, Hongyuan; Wang, Dongqi; Li, Xingliang; Wang, Xiaolin

    2017-03-01

    The molecule of glutaroimidedioxime, a cyclic imidedioxime moiety that can form during the synthesis of the poly(amidoxime)sorbent and is reputedly responsible for the extraction of uranium from seawater. Complexation of manganese (II) with glutarimidedioxime in aqueous solutions was investigated with potentiometry, calorimetry, ESI-mass spectrometry, electrochemical measurements and quantum chemical calculations. Results show that complexation reactions of manganese with glutarimidedioxime are both enthalpy and entropy driven processes, implying that the sorption of manganese on the glutarimidedioxime-functionalized sorbent would be enhanced at higher temperatures. Complex formation of manganese with glutarimidedioxime can assist redox of Mn(II/III). There are about ~15% of equilibrium manganese complex with the ligand in seawater pH(8.3), indicating that manganese could compete to some degree with uranium for sorption sites.

  19. Genesis of the Hongzhen metamorphic core complex and its tectonic implications

    Institute of Scientific and Technical Information of China (English)

    ZHU Guang; XIE ChengLong; XIANG BiWei; HU ZhaoQi; WANG YongSheng; LI Xing

    2007-01-01

    The Hongzhen metamorphic core complex is situated in the Yangtze plate to the east of the Dabie orogenic belt. Its ductile detachment zone in the foot wall overprints on the metamorphic complex of the Proterozoic Dongling Group. The present profile of the ductile shear zone with consistent SW-dipping mineral elongation lineation shows antiform and reversed S-shape from northeast to southwest respectively. Exposure structures, microstructures and quartz C-axis fabric all indicate top-to-SW movement for the ductile shear zone. Recrystallisation types of quartz and feldspar in the mylonites demonstrate that the shear zone was developed under the amphibolite facies condition and at mid-crust levels. The metamorphic core complex formed in the Early Cretaceous with a muscovite plateau age of 124.8±1.2 Ma. Regional NE-SW extension along a SW-dipping, gentle detachment zone was responsible for formation of the core complex. Intrusion of the Hongzhen granite with a biotite plateau age of 124.8±1.2 Ma rendered the ductile shear zone curved, uplifted and final localization of the core complex. The Hongzhen metamorphic core complex suggests that the Early Cretaceous magmatism in this region took place under the condition of regional extension and the eastern Yangtze plate also experienced lithospheric thinning.

  20. Genesis of the Hongzhen metamorphic core complex and its tectonic implications

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The Hongzhen metamorphic core complex is situated in the Yangtze plate to the east of the Dabie oro- genic belt. Its ductile detachment zone in the foot wall overprints on the metamorphic complex of the Proterozoic Dongling Group. The present profile of the ductile shear zone with consistent SW-dipping mineral elongation lineation shows antiform and reversed S-shape from northeast to southwest respectively. Exposure structures, microstructures and quartz C-axis fabric all indicate top-to-SW movement for the ductile shear zone. Recrystallisation types of quartz and feldspar in the mylonites demonstrate that the shear zone was developed under the amphibolite facies condition and at mid-crust levels. The metamorphic core complex formed in the Early Cretaceous with a muscovite plateau age of 124.8±1.2 Ma. Regional NE-SW extension along a SW-dipping, gentle detachment zone was responsible for formation of the core complex. Intrusion of the Hongzhen granite with a biotite plateau age of 124.8±1.2 Ma rendered the ductile shear zone curved, uplifted and final localization of the core complex. The Hongzhen metamorphic core complex suggests that the Early Cretaceous magma- tism in this region took place under the condition of regional extension and the eastern Yangtze plate also experienced lithospheric thinning.

  1. Age and origin of the Cortlandt Complex, New York: Implications from Sm-Nd data

    Science.gov (United States)

    Domenick, M.A.; Basu, A.R.

    1982-01-01

    Sm-Nd systematics for nine whole-rock samples of hornblende norites, pyroxenites and a lamprophyre from various parts of the Cortlandt Complex were analyzed. Six of these samples from the central and eastern parts of the complex give an isochron age of 430??34 (2 ??) Ma with an e{open}Nd value of -2.9??0.5, and the other three samples from the western part, including the lamprophyre, define a similar age of 394??33 (2 ??) Ma but with a distinctly different e{open}Nd value of -1.4??0.4. The two different initial 143Nd/144Nd ratios corresponding to these e{open}-values are interpreted to reflect continental crustal contamination of the lamprophyric parental liquid prior to final emplacement and crystal fractionation to produce the different rock types of the complex. The intrusion age of 430 Ma for the complex clearly post-dates the major metamorphic event of the Taconic orogeny. The Nd-isotopic data also suggest a relationship between the Cortlandt Complex and a belt of lamprophyric dike rocks to the west, known as the Beemerville trend, which cuts across the metamorphic trends of the Taconic (Ratcliffe 1981). ?? 1982 Springer-Verlag.

  2. Functional implications of pigments bound to a cyanobacterial cytochrome b6f complex.

    Science.gov (United States)

    Wenk, Stephan-Olav; Schneider, Dirk; Boronowsky, Ute; Jäger, Cornelia; Klughammer, Christof; de Weerd, Frank L; van Roon, Henny; Vermaas, Wim F J; Dekker, Jan P; Rögner, Matthias

    2005-01-01

    A highly purified cytochrome b(6)f complex from the cyanobacterium Synechocystis sp. PCC 6803 selectively binds one chlorophyll a and one carotenoid in analogy to the recent published structure from two other b(6)f complexes. The unknown function of these pigments was elucidated by spectroscopy and site-directed mutagenesis. Low-temperature redox difference spectroscopy showed red shifts in the chlorophyll and carotenoid spectra upon reduction of cytochrome b(6), which indicates coupling of these pigments with the heme groups and thereby with the electron transport. This is supported by the correlated kinetics of these redox reactions and also by the distinct orientation of the chlorophyll molecule with respect to the heme cofactors as shown by linear dichroism spectroscopy. The specific role of the carotenoid echinenone for the cytochrome b(6)f complex of Synechocystis 6803 was elucidated by a mutant lacking the last step of echinenone biosynthesis. The isolated mutant complex preferentially contained a carotenoid with 0, 1 or 2 hydroxyl groups (most likely 9-cis isomers of beta-carotene, a monohydroxy carotenoid and zeaxanthin, respectively) instead. This indicates a substantial role of the carotenoid - possibly for strucure and assembly - and a specificity of its binding site which is different from those in most other oxygenic photosynthetic organisms. In summary, both pigments are probably involved in the structure, but may also contribute to the dynamics of the cytochrome b(6)f complex.

  3. The vocabulary of beginning writers: implications for children with complex communication needs.

    Science.gov (United States)

    Clendon, Sally A; Erickson, Karen A

    2008-12-01

    One of the greatest challenges facing augmentative and alternative communication (AAC) professionals is providing children with complex communication needs with access to the vocabulary that they need in order to develop mature language and literacy abilities. The purpose of this study was to analyze the vocabulary used by typically developing early-elementary children in the United States and New Zealand when they write about self-selected topics, in order to inform practices with children with complex communication needs. The children's writing samples were compared across school ages and countries. The school age comparisons highlighted the relatively restricted range of vocabulary used by children in the earliest stages of writing development, and the country comparisons revealed differences in core vocabulary. The findings of this study hopefully will assist AAC professionals as they engage in selecting, prioritizing, and organizing vocabulary to support written language development in children with complex communication needs.

  4. Modularity of the anthropoid dentition: Implications for the evolution of the hominin canine honing complex.

    Science.gov (United States)

    Delezene, Lucas K

    2015-09-01

    In most anthropoid primates, the maxillary canine, mandibular canine, and mesial mandibular premolar form a functional complex that hones the canines. Characters in functional complexes are predicted to covary genetically, which constrains their evolutionary independence. As a result of substantial changes to canine and honing premolar size and shape, hominins are characterized by the apomorphic loss of canine honing. In early hominins, changes in canine and 'honing' premolar size and shape appear to have been uncoordinated, which is unexpected if there is strong genetic covariation coupling these teeth. Using the pattern and magnitude of phenotypic dental size covariation in extant anthropoids, results of this study indicate that certain dimensions of the anthropoid honing complex are characterized by strong size covariation within species and that canine and honing premolar size have evolved in a coordinated manner in both males and females, which undermines arguments that the complex is selectively important only in males. Further, there is no evidence for negative or strong positive covariance between canine and either incisor or postcanine size. If patterns of phenotypic covariation reflect genetic covariation, this suggests that canine reduction was unlikely to have been a dependent change associated with the development of postcanine megadontia or incisor reduction.

  5. Specific cpb copies within the Leishmania donovani complex: evolutionary interpretations and potential clinical implications in humans.

    Science.gov (United States)

    Hide, M; Bras-Gonçalves, R; Bañuls, A L

    2007-03-01

    Leishmania infantum and Leishmania donovani both pertain to the L. (L.) donovani complex and are responsible for visceral leishmaniasis. To explore the L. donovani complex, we focused our study on cysteine protease B (cpb) and especially on 2 cpb copies: cpbE and cpbF. We selected cpb genes because of their phylogenetic interest and host-parasite interaction involvement. Sequencing these 2 copies revealed (i) that cpbE is specific to L. infantum and cpbF is specific to L. donovani and (ii) that these 2 copies are different in length and sequence. Phylogenetic analysis and protein predictions were carried out in order to compare these copies (i) with other trypanosomatid cpb, especially L. mexicana, and (ii) within the L. donovani complex. Our results revealed patterns specific to the L. donovani complex such as the COOH-terminal extension, potential epitopes and N-glycosylation sites. Moreover, phylogenetic analysis revealed different levels of polymorphism between L. infantum and L. donovani and confirmed the ancestral status of the latter. L. infantum has a shorter sequence and a deleted sequence responsible for modifications in protein conformation and catalytic triad. Considering the clinical aspect, L. infantum dermotropic strains appeared more polymorphic than L. infantum viscerotropic strains.

  6. Extraordinary stability of copper(I)-tetrathiomolybdate complexes: possible implications for aquatic ecosystems.

    Science.gov (United States)

    Helz, George R; Erickson, Britt E

    2011-01-01

    An extraordinary affinity of MoS₄²⁻ for Cu accounts for Mo-induced Cu deficiency in ruminants (molybdenosis) and offers an approach to treating Wilson's disease in humans. Evidence of thiomolybdates in sulfidic natural waters, and possibly even as metastable traces in oxic natural waters, raises the question of how Cu-Mo affinity might affect Cu availability or toxicity in aquatic ecosystems. Stabilities of inorganic Cu-MoS₄²⁻ complexes are characterized and quantified here for the first time. Two remarkably stable Cu(I) dissolved complexes are identified (T = 23°C ± 2°C): Cu₂(HS)₂MoS₄²⁻ and Cu₂S₂MoS₄⁴⁻. In addition, the solubility constant for a precipitate (NH₄CuMoS₄) was measured. Under the extremely reducing conditions in rumen fluids, these complexes will greatly suppress Cu(+) activity, supporting prior conclusions about the mechanism of molybdenosis. In sulfidic natural waters, they help to prevent complete Cu impoverishment, as might otherwise occur by sulfide mineral precipitation. On the other hand, the complexes discovered here are HS⁻-dependent and could not be important in oxic natural waters (with HS⁻ concentrations < 10⁻⁹ M) even if metastable, biogenic MoS₄²⁻ indeed were present as previously conjectured.

  7. 3D structure of the Yersinia entomophaga toxin complex and implications for insecticidal activity

    Science.gov (United States)

    Landsberg, Michael J.; Jones, Sandra A.; Rothnagel, Rosalba; Busby, Jason N.; Marshall, Sean D. G.; Simpson, Robert M.; Lott, J. Shaun; Hankamer, Ben; Hurst, Mark R. H.

    2011-01-01

    Toxin complex (Tc) proteins are a class of bacterial protein toxins that form large, multisubunit complexes. Comprising TcA, B, and C components, they are of great interest because many exhibit potent insecticidal activity. Here we report the structure of a novel Tc, Yen-Tc, isolated from the bacterium Yersinia entomophaga MH96, which differs from the majority of bacterially derived Tcs in that it exhibits oral activity toward a broad range of insect pests, including the diamondback moth (Plutella xylostella). We have determined the structure of the Yen-Tc using single particle electron microscopy and studied its mechanism of toxicity by comparative analyses of two variants of the complex exhibiting different toxicity profiles. We show that the A subunits form the basis of a fivefold symmetric assembly that differs substantially in structure and subunit arrangement from its most well characterized homologue, the Xenorhabdus nematophila toxin XptA1. Histopathological and quantitative dose response analyses identify the B and C subunits, which map to a single, surface-accessible region of the structure, as the sole determinants of toxicity. Finally, we show that the assembled Yen-Tc has endochitinase activity and attribute this to putative chitinase subunits that decorate the surface of the TcA scaffold, an observation that may explain the oral toxicity associated with the complex. PMID:22158901

  8. Geochemical and mineralogical characteristics of the Yonghwa phoscorite-carbonatite complex, South Korea, and genetic implications

    Science.gov (United States)

    Seo, Jieun; Choi, Seon-Gyu; Park, Jung-Woo; Whattam, Scott; Kim, Dong Woo; Ryu, In-Chang; Oh, Chang Whan

    2016-10-01

    The Yonghwa phoscorite-carbonatite complex occurs as an isolated individual body with an inclined pipe shape within the Precambrian Gyeonggi Massif, South Korea. The phoscorite consists mainly of olivine, apatite, magnetite, carbonates, amphibole, and phlogopite, and can be subdivided into two types, olivine-rich and apatite-rich. The carbonatite is composed of calcite, Mg-rich dolomite, Fe-rich dolomite, magnetite, apatite, and/or siderite. Intensive fenitization occurred along the boundary between the complex and the wall rocks of leucocratic banded gneiss and garnet-bearing metabasite. The paragenetic sequences of the phoscorite-carbonatite complex demonstrate that the early crystallization of silicate minerals was followed by the crystallization of carbonates as the carbonatitic melt cooled. Magnetite occurs within the complex, and the carbonatites have Fe contents that are higher than typical ferrocarbonatites, due to the high magnetite contents. The rare earth elements (REEs) in the phoscorites and carbonatites are weakly fractionated and show enrichments of LREEs and Nb relative to HREEs. Furthermore, the apatites reflect the fractionated trends of LREEs relative to HREEs. Phoscorite apatites are enriched in Sr and show substitutions between Ca and Sr. Mica chemistry reflects the evolutionary trend of Fe2 + and Mg2 + in the phoscorite-carbonatite melt without Al substitution. Micas exhibit high values of Mg# in the phoscorite-carbonatite complex, but lower values in fenites. Via thermodynamic analysis, the early stability fields of magnetite-pyrrhotite-graphite-carbonate assemblages indicate that the Yonghwa phoscorite and carbonatite crystallized under conditions of 600 °C, 2 kbar, and XCO2 = 0.2. Afterward, melts underwent an evolution to the late stability fields of magnetite-pyrite-pyrrhotite-ilmenite assemblages. The δ13C and δ18O isotopic compositions of carbonates in the Yonghwa phoscorite-carbonatite complex are - 8.2‰ to - 3.4‰ and 6.6 to 11

  9. Oxalate metal complexes in aerosol particles: implications for the hygroscopicity of oxalate-containing particles

    Directory of Open Access Journals (Sweden)

    T. Furukawa

    2011-05-01

    Full Text Available Atmospheric aerosols have both a direct and an indirect cooling effect that influences the radiative balance at the Earth's surface. It has been estimated that the degree of cooling is large enough to weaken the warming effect of carbon dioxide. Among the cooling factors, secondary organic aerosols (SOA play an important role in the solar radiation balance in the troposphere as SOA can act as cloud condensation nuclei (CCN and extend the lifespan of clouds because of their high hygroscopic and water soluble nature. Oxalic acid is an important component of SOA, and is produced via several formation pathways in the atmosphere. However, it is not certain whether oxalic acid exists as free oxalic acid or as metal oxalate complexes in aerosols, although there is a marked difference in their solubility in water and their hygroscopicity. We employed X-ray absorption fine structure spectroscopy to characterize the calcium (Ca and zinc (Zn in aerosols collected at Tsukuba in Japan. Size-fractionated aerosol samples were collected for this purpose using an impactor aerosol sampler. It was shown that 10–60% and 20–100% of the total Ca and Zn in the finer particles (<2.1 μm were present as Ca and Zn oxalate complexes, respectively. Oxalic acid is hygroscopic and can thus increase the CCN activity of aerosol particles, while complexes with various polyvalent metal ions such as Ca and Zn are not hygroscopic, which cannot contribute to the increase of the CCN activity of aerosols. Based on the concentrations of noncomplexed and metal-complexed oxalate species, we found that most of the oxalic acid is present as metal oxalate complexes in the aerosols, suggesting that oxalic acid does not always increase the hygroscopicity of aerosols in the atmosphere. Similar results are expected for other dicarboxylic acids, such as malonic and succinic acids. Thus, it is advisable that the cooling effect of organic aerosols should be estimated by including the

  10. Mapping of West Siberian taiga wetland complexes using Landsat imagery: implications for methane emissions

    Science.gov (United States)

    Evgenievna Terentieva, Irina; Vladimirovich Glagolev, Mikhail; Dmitrievna Lapshina, Elena; Faritovich Sabrekov, Alexandr; Maksyutov, Shamil

    2016-08-01

    High-latitude wetlands are important for understanding climate change risks because these environments sink carbon dioxide and emit methane. However, fine-scale heterogeneity of wetland landscapes poses a serious challenge when generating regional-scale estimates of greenhouse gas fluxes from point observations. In order to reduce uncertainties at the regional scale, we mapped wetlands and water bodies in the taiga zone of The West Siberia Lowland (WSL) on a scene-by-scene basis using a supervised classification of Landsat imagery. Training data consist of high-resolution images and extensive field data collected at 28 test areas. The classification scheme aims at supporting methane inventory applications and includes seven wetland ecosystem types comprising nine wetland complexes distinguishable at the Landsat resolution. To merge typologies, mean relative areas of wetland ecosystems within each wetland complex type were estimated using high-resolution images. Accuracy assessment based on 1082 validation polygons of 10 × 10 pixel size indicated an overall map accuracy of 79 %. The total area of the WSL wetlands and water bodies was estimated to be 52.4 Mha or 4-12 % of the global wetland area. Ridge-hollow complexes prevail in WSL's taiga zone accounting for 33 % of the total wetland area, followed by pine bogs or "ryams" (23 %), ridge-hollow-lake complexes (16 %), open fens (8 %), palsa complexes (7 %), open bogs (5 %), patterned fens (4 %), and swamps (4 %). Various oligotrophic environments are dominant among wetland ecosystems, while poor fens cover only 14 % of the area. Because of the significant change in the wetland ecosystem coverage in comparison to previous studies, a considerable reevaluation of the total CH4 emissions from the entire region is expected. A new Landsat-based map of WSL's taiga wetlands provides a benchmark for validation of coarse-resolution global land cover products and wetland data sets in high latitudes.

  11. Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes

    Directory of Open Access Journals (Sweden)

    Emes Richard D

    2008-01-01

    Full Text Available Abstract Background Glutamate gated postsynaptic receptors in the central nervous system (CNS are essential for environmentally stimulated behaviours including learning and memory in both invertebrates and vertebrates. Though their genetics, biochemistry, physiology, and role in behaviour have been intensely studied in vitro and in vivo, their molecular evolution and structural aspects remain poorly understood. To understand how these receptors have evolved different physiological requirements we have investigated the molecular evolution of glutamate gated receptors and ion channels, in particular the N-methyl-D-aspartate (NMDA receptor, which is essential for higher cognitive function. Studies of rodent NMDA receptors show that the C-terminal intracellular domain forms a signalling complex with enzymes and scaffold proteins, which is important for neuronal and behavioural plasticity Results The vertebrate NMDA receptor was found to have subunits with C-terminal domains up to 500 amino acids longer than invertebrates. This extension was specific to the NR2 subunit and occurred before the duplication and subsequent divergence of NR2 in the vertebrate lineage. The shorter invertebrate C-terminus lacked vertebrate protein interaction motifs involved with forming a signaling complex although the terminal PDZ interaction domain was conserved. The vertebrate NR2 C-terminal domain was predicted to be intrinsically disordered but with a conserved secondary structure. Conclusion We highlight an evolutionary adaptation specific to vertebrate NMDA receptor NR2 subunits. Using in silico methods we find that evolution has shaped the NMDA receptor C-terminus into an unstructured but modular intracellular domain that parallels the expansion in complexity of an NMDA receptor signalling complex in the vertebrate lineage. We propose the NR2 C-terminus has evolved to be a natively unstructured yet flexible hub organising postsynaptic signalling. The evolution of

  12. An assessment of hydrothermal alteration in the Santiaguito lava dome complex, Guatemala: implications for dome collapse hazards

    Science.gov (United States)

    Ball, Jessica L.; Calder, Eliza S.; Hubbard, Bernard E.; Bernstein, Marc L.

    2013-01-01

    A combination of field mapping, geochemistry, and remote sensing methods has been employed to determine the extent of hydrothermal alteration and assess the potential for failure at the Santiaguito lava dome complex, Guatemala. The 90-year-old complex of four lava domes has only experienced relatively small and infrequent dome collapses in the past, which were associated with lava extrusion. However, existing evidence of an active hydrothermal system coupled with intense seasonal precipitation also presents ideal conditions for instability related to weakened clay-rich edifice rocks. Mapping of the Santiaguito dome complex identified structural features related to dome growth dynamics, potential areas of weakness related to erosion, and locations of fumarole fields. X-ray diffraction and backscattered electron images taken with scanning electron microscopy of dacite and ash samples collected from around fumaroles revealed only minor clay films, and little evidence of alteration. Mineral mapping using ASTER and Hyperion satellite images, however, suggest low-temperature (alteration on erosional surfaces of the domes, but not the type of pervasive acid-sulfate alteration implicated in collapses of other altered edifices. To evaluate the possibility of internal alteration, we re-examined existing aqueous geochemical data from dome-fed hot springs. The data indicate significant water–rock interaction, but the Na–Mg–K geoindicator suggests only a short water residence time, and δ18O/δD ratios show only minor shifts from the meteoric water line with little precipitation of secondary (alteration) minerals. Based on available data, hydrothermal alteration on the dome complex appears to be restricted to surficial deposits of hydrous silica, but the study has highlighted, importantly, that the 1902 eruption crater headwall of Santa María does show more advanced argillic alteration. We also cannot rule out the possibility of advanced alteration within the dome

  13. Cenozoic crustal extension in southeastern Arizona and implications for models of core-complex development

    Science.gov (United States)

    Arca, M. Serkan; Kapp, Paul; Johnson, Roy A.

    2010-06-01

    In conventional models of Cordilleran-style metamorphic core-complex development, initial extension occurs along a breakaway fault, which subsequently is deformed into a synform and abandoned in response to isostatic rebound and new faults breaking forward in the dominant transport direction. The Catalina core complex and associated geology in southeastern Arizona have been pointed to as a type example of this model. From southwest to northeast, the region is characterized by the NW-SE trending Tucson basin, the Catalina core complex, the San Pedro trough and the Galiuro Mountains. The Catalina core complex is bounded by the top-to-the-southwest Catalina detachment fault along its southwestern flank and the low-angle, northeast-dipping San Pedro fault along its northeastern flank. The Galiuro Mountains expose non-mylonitic rocks and are separated from the San Pedro trough to the southwest by a system of low- to moderate-angle southwest-dipping normal faults. This Galiuro fault system is widely interpreted to be the breakaway zone for the Catalina core complex. It is inferred to be folded into a synform beneath the San Pedro trough, to resurface to the southwest as the San Pedro fault, and to have been abandoned during slip along the younger Catalina detachment. This study aimed to test this model through analysis of field relations and geochronological age constraints, and reprocessing and interpretation of 2-D seismic reflection data from the Catalina core complex and San Pedro trough. In contrast to predictions of the conventional breakaway zone model, we raise the possibility of a moderate-angle, southwest-dipping detachment fault beneath the San Pedro trough that could extend to mid-crustal depths beneath the eastern flank of the Catalina Mountains. We present an alternative kinematic model in which extension was accommodated by a pair of top-to-the-southwest normal-fault systems (the Catalina and Galiuro detachment faults), with the only major difference

  14. Recognition of the neurobiological insults imposed by complex trauma and the implications for psychotherapeutic interventions.

    Science.gov (United States)

    Corrigan, Frank M; Hull, Alastair M

    2015-04-01

    Considerable research has been conducted on particular approaches to the psychotherapy of post-traumatic stress disorder (PTSD). However, the evidence indicates that modalities tested in randomised controlled trials (RCTs) are far from 100% applicable and effective and the RCT model itself is inadequate for evaluating treatments of conditions with complex presentations and frequently multiple comorbidities. Evidence at levels 2 and 3 cannot be ignored. Expert-led interventions consistent with the emerging understanding of affective neuroscience are needed and not the unthinking application of a dominant therapeutic paradigm with evidence for PTSD but not complex PTSD. The over-optimistic claims for the effectiveness of cognitive-behavioural therapy (CBT) and misrepresentation of other approaches do not best serve a group of patients greatly in need of help; excluding individuals with such disorders as untreatable or treatment-resistant when viable alternatives exist is not acceptable.

  15. Structure of the Pds5-Scc1 Complex and Implications for Cohesin Function

    Directory of Open Access Journals (Sweden)

    Kyle W. Muir

    2016-03-01

    Full Text Available Sister chromatid cohesion is a fundamental prerequisite to faithful genome segregation. Cohesion is precisely regulated by accessory factors that modulate the stability with which the cohesin complex embraces chromosomes. One of these factors, Pds5, engages cohesin through Scc1 and is both a facilitator of cohesion, and, conversely also mediates the release of cohesin from chromatin. We present here the crystal structure of a complex between budding yeast Pds5 and Scc1, thus elucidating the molecular basis of Pds5 function. Pds5 forms an elongated HEAT repeat that binds to Scc1 via a conserved surface patch. We demonstrate that the integrity of the Pds5-Scc1 interface is indispensable for the recruitment of Pds5 to cohesin, and that its abrogation results in loss of sister chromatid cohesion and cell viability.

  16. Volumetric analysis of complex lunar craters - Implications for basin ring formation

    Science.gov (United States)

    Hale, W. S.; Grieve, R. A. F.

    1982-01-01

    The crater to basin transition in complex lunar craters is characterized by combining morphological and volumetric analyses of their central peaks with subsurface data from terrestrial complex impact structures which suggest that the amount of uplifted material, as judged from its depth of origin, continues to increase with increasing rim diameter. This latter phenomenon implies that a redistribution of uplifted material away from a centralized peak may occur in the larger craters. The morphological and volumetric changes described occur over a rim diameter range of 51-80 km, which is considerably lower than the previously proposed range for the crater to basin transition of 140-175 km. Evidence is given in support of a crater to basin transition which begins at 51-80 km, and is characterized by a relative reduction in central peak volume and a development of rings of floor roughening which may be precursors of peak ring development.

  17. Pi-Pi complexation of bupivacaine and analogues with aromatic receptors: implications for overdose remediation.

    Science.gov (United States)

    Powell, Evon; Lee, Y H; Partch, Richard; Dennis, Donn; Morey, Timothy; Varshney, Manoj

    2007-01-01

    The interaction of the important but often overdosed local anesthetic bupivacaine, its structural analogs 2,6-dimethylaniline, and N-methyl-2,6-dimethylacetanilide, and cocaine, with several electron deficient aromatic moieties were studied primarily by proton NMR and UV-visible spectroscopy. In solution, the anesthetic, its analogs and cocaine are electron donors and form pi-pi charge transfer complexes with strong aromatic acceptors, as monitored by the upfield changes induced in the NMR chemical shifts (delta) and red-shifted UV-vis wavelength (lamda max) absorbance of the acceptors. The equilibrium binding constant, K, was determined from the 1H NMR charge transfer induced chemical shift changes and used to calculate the free energy (deltaG) for complex formation of three acceptor-donor pairs. HPLC results indicate that the concentrations of free bupivacaine, its analogs and of cocaine are reduced from solution via binding to aromatic-functionalized silica.

  18. Recognition of the neurobiological insults imposed by complex trauma and the implications for psychotherapeutic interventions †

    OpenAIRE

    Corrigan, Frank M.; Hull, Alastair M

    2015-01-01

    Considerable research has been conducted on particular approaches to the psychotherapy of post-traumatic stress disorder (PTSD). However, the evidence indicates that modalities tested in randomised controlled trials (RCTs) are far from 100% applicable and effective and the RCT model itself is inadequate for evaluating treatments of conditions with complex presentations and frequently multiple comorbidities. Evidence at levels 2 and 3 cannot be ignored. Expert-led interventions consistent with...

  19. Crystal structure of tarocystatin-papain complex: implications for the inhibition property of group-2 phytocystatins.

    Science.gov (United States)

    Chu, Ming-Hung; Liu, Kai-Lun; Wu, Hsin-Yi; Yeh, Kai-Wun; Cheng, Yi-Sheng

    2011-08-01

    Tarocystatin (CeCPI) from taro (Colocasia esculenta cv. Kaohsiung no. 1), a group-2 phytocystatin, shares a conserved N-terminal cystatin domain (NtD) with other phytocystatins but contains a C-terminal cystatin-like extension (CtE). The structure of the tarocystatin-papain complex and the domain interaction between NtD and CtE in tarocystatin have not been determined. We resolved the crystal structure of the phytocystatin-papain complex at resolution 2.03 Å. Surprisingly, the structure of the NtD-papain complex in a stoichiometry of 1:1 could be built, with no CtE observed. Only two remnant residues of CtE could be built in the structure of the CtE-papain complex. Therefore, CtE is easily digested by papain. To further characterize the interaction between NtD and CtE, three segments of tarocystatin, including the full-length (FL), NtD and CtE, were used to analyze the domain-domain interaction and the inhibition ability. The results from glutaraldehyde cross-linking and yeast two-hybrid assay indicated the existence of an intrinsic flexibility in the region linking NtD and CtE for most tarocystatin molecules. In the inhibition activity assay, the glutathione-S-transferase (GST)-fused FL showed the highest inhibition ability without residual peptidase activity, and GST-NtD and FL showed almost the same inhibition ability, which was higher than with NtD alone. On the basis of the structures, the linker flexibility and inhibition activity of tarocystatins, we propose that the overhangs from the cystatin domain may enhance the inhibition ability of the cystatin domain against papain.

  20. Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures

    Science.gov (United States)

    2010-07-04

    Mandelbrot, Fractals and Scaling in Finance : Discontinuity, Concen- tration, Risk. New York: Springer-Verlag, 1997. [51] A. Bookstein, “Informetric...primarily within physics, that grew out of chaos, fractals , and criticality and has been dominating the study of disorganized complexity since 1960. One... fractals , self-similarity, and self-organization. Among the most popular of these theories, self-organized crit- icality (SOC) [41], edge-of-chaos (EOC

  1. Complex Urban Simulations and Sustainable Urban Planning with Spatial and Social Implications

    Science.gov (United States)

    Becker, T.; Boschert, S.; Hempel, L.; Höffken, S.; Obst, B.

    2013-09-01

    Cities can be seen as complex systems of heterogeneous processes with a high variety of different influences (e.g. social, infrastructural, economic, and political impacts). This especially applies for tasks concerning urban development of existing assets. The optimization of traffic flows, reduction of emissions, improvement of energy efficiency, but also urban climate and landscape planning issues require the involvement of many different actors, balancing different perspectives, and divergent claims. The increasing complexities of planning and decision processes make high demands on professionals of various disciplines, government departments, and municipal decision-makers. In the long term, topics like urban resilience, energy management, risk and resource management have to be taken into account and reflected in future projects, but always related to socio-spatial and governmental aspects. Accordingly, it is important to develop models to be able to understand and analyze the outcomes and effects of governmental measures and planning to the urban environment. Thus, a more systematic approach is needed - going away from welldefined city models to city system models. The purpose is to describe urban processes not only quantitatively, but to grasp their qualitative complexity and interdependencies, by modeling and simulating existing urban systems. This contribution will present the City System Model (CSM) concept closely related to an Urban Energy Planning use case, will highlight the methodology, and focus on first results and findings from an ongoing interdisciplinary research project and use case to improve the basis of information for decision-makers and politicians about urban planning decisions.

  2. Complexity

    CERN Document Server

    Gershenson, Carlos

    2011-01-01

    The term complexity derives etymologically from the Latin plexus, which means interwoven. Intuitively, this implies that something complex is composed by elements that are difficult to separate. This difficulty arises from the relevant interactions that take place between components. This lack of separability is at odds with the classical scientific method - which has been used since the times of Galileo, Newton, Descartes, and Laplace - and has also influenced philosophy and engineering. In recent decades, the scientific study of complexity and complex systems has proposed a paradigm shift in science and philosophy, proposing novel methods that take into account relevant interactions.

  3. Geochemistry, Nd Isotopic Characteristics of Metamorphic Complexes in Northern Hebei: Implications for Crustal Accretion

    Institute of Scientific and Technical Information of China (English)

    LIU Shuwen; TIAN Wei; L(U) Yongjun; LI Qiugen; FENG Yonggang; K. H. PARK; Y. S. SONG

    2006-01-01

    The middle segment of the northern margin of the North China Craton (NCC) consists mainly of metamorphosed Archean Dantazi Complex, Paleoproterozoic Hongqiyingzi Complex and unmetamorphosed gabbro-anorthosite-meta-alkaline granite, as well as metamorphosed Late Paleozoic mafic to granitoid rocks in the Damiao-Changshaoying area. The ~2.49 Ga Dantazi Complex comprises dioritic-trondhjemitic-granodoritic-monzogranitic gneisses metamorphosed in amphibolite to granulite facies. Petrochemical characteristics reveal that most of the rocks belong to a medium- to high-potassium calc-alkaline series, and display Mg# less than 40, right-declined REE patterns with no to obviously positive Eu anomalies, evidently negative Th, Nb, Ta and Ti anomalies in primitive mantlenormalized spider diagrams, εNd(t)=+0.65 to -0.03, and depleted mantle model ages TDM=2.78-2.71 Ga.Study in petrogenesis indicates that the rocks were formed from magmatic mixing between mafic magma from the depleted mantle and granitoid magma from partial melting of recycled crustal mafic rocks in a continental margin setting. The 2.44-2.41 Ga Hongqiyingzi Complex is dominated by metamorphic mafic-granodioritic-monzogranitic gneisses, displaying similar petrochemical features to the Dantazi Complex, namely medium to high potassium callc-alkaline series, and the mafic rocks show evident change in LILEs, negative Th, Nb, Ta, Zr anomalies and positive P anomalies. And the other granitiod samples also exhibit negative Th, Nb, Ta, P and Ti anomalies. All rocks in the Hongqiyingzi Complex show right-declined REE patterns without Eu anomaly. The metamorphic mafic rocks with εNd(t) = -1.64 may not be an identical magmatic evolution series with granitoids that have εNd(t) values of +3.19 to +1.94 and TDM ages of 2.55-2.52 Ga. These granitic rocks originated from hybrid between mafic magma from the depleted mantle and magma from partial melting of juvenile crustal mafic rocks in an island arc setting. All the ~311

  4. Tissue-specific genetic control of splicing: implications for the study of complex traits.

    Directory of Open Access Journals (Sweden)

    Erin L Heinzen

    2008-12-01

    Full Text Available Numerous genome-wide screens for polymorphisms that influence gene expression have provided key insights into the genetic control of transcription. Despite this work, the relevance of specific polymorphisms to in vivo expression and splicing remains unclear. We carried out the first genome-wide screen, to our knowledge, for SNPs that associate with alternative splicing and gene expression in human primary cells, evaluating 93 autopsy-collected cortical brain tissue samples with no defined neuropsychiatric condition and 80 peripheral blood mononucleated cell samples collected from living healthy donors. We identified 23 high confidence associations with total expression and 80 with alternative splicing as reflected by expression levels of specific exons. Fewer than 50% of the implicated SNPs however show effects in both tissue types, reflecting strong evidence for distinct genetic control of splicing and expression in the two tissue types. The data generated here also suggest the possibility that splicing effects may be responsible for up to 13 out of 84 reported genome-wide significant associations with human traits. These results emphasize the importance of establishing a database of polymorphisms affecting splicing and expression in primary tissue types and suggest that splicing effects may be of more phenotypic significance than overall gene expression changes.

  5. Stratigraphic units overlying the Zambales Ophiolite Complex (ZOC) in Luzon, (Philippines): Tectonostratigraphic significance and regional implications

    Science.gov (United States)

    Queaño, Karlo L.; Dimalanta, Carla B.; Yumul, Graciano P.; Marquez, Edanjarlo J.; Faustino-Eslava, Decibel V.; Suzuki, Shigeyuki; Ishida, Keisuke

    2017-07-01

    The Zambales Ophiolite Complex (ZOC) on the island of Luzon, Philippines is one of the most well-studied crust-mantle sequences in the region. Several massifs comprise the ZOC, one of which is the Coto Block overlain by clastic sedimentary units previously dated as Eocene. Geochronologic studies from diabase, granodiorites and other late-stage magmatic products similarly yielded the same age. Succeeding tectonic models have therefore all been grounded on the assumption that the entire ZOC is Eocene. Recent investigations, however, revealed the presence of chert blocks within the Early to Middle Miocene clastic formation overlying the Acoje Block in the northern part of the ophiolite complex. Radiolarians extracted from the cherts yielded a stratigraphic range that suggests a Late Jurassic to Early Cretaceous age. The recognition of a much older age than previously reported of the ZOC warrants a re-examination of its actual distribution and genesis. Correlating with other similarly-aged ophiolites, we suggest defining a western Mesozoic ophiolite belt, largely extending from the west-central portion of the archipelago to the northeastern tip of Luzon island. Tentatively, we attribute the Mesozoic ophiolitic and associated rocks in western Luzon to an arc-continent collision involving the Philippine Mobile Belt and the Palawan Microcontinental Block. In addition, differences in the clastic compositions of the Cenozoic sedimentary formations provide material not only for deciphering the ZOC's unroofing history but also for constraining the timing of province linkage. The intermittent appearance of lithic fragments and detrital minerals from the ophiolite in the units of the Middle Miocene Candelaria Limestone and the Late Miocene to Early Pliocene Sta. Cruz Formation indicates significant but geographically variable contributions from the ophiolite complex. In the northern Zambales Range, the Sta. Cruz Formation caps the Coto Block and the Acoje Block of the ZOC

  6. Complex phylogeographic history of central African forest elephants and its implications for taxonomy

    Directory of Open Access Journals (Sweden)

    Curran Bryan

    2007-12-01

    Full Text Available Abstract Background Previous phylogenetic analyses of African elephants have included limited numbers of forest elephant samples. A large-scale assessment of mitochondrial DNA diversity in forest elephant populations here reveals a more complex evolutionary history in African elephants as a whole than two-taxon models assume. Results We analysed hypervariable region 1 of the mitochondrial control region for 71 new central African forest elephants and the mitochondrial cytochrome b gene from 28 new samples and compare these sequences to other African elephant data. We find that central African forest elephant populations fall into at least two lineages and that west African elephants (both forest and savannah share their mitochondrial history almost exclusively with central African forest elephants. We also find that central African forest populations show lower genetic diversity than those in savannahs, and infer a recent population expansion. Conclusion Our data do not support the separation of African elephants into two evolutionary lineages. The demographic history of African elephants seems more complex, with a combination of multiple refugial mitochondrial lineages and recurrent hybridization among them rendering a simple forest/savannah elephant split inapplicable to modern African elephant populations.

  7. Effects of rupture complexity on local tsunami inundation: Implications for probabilistic tsunami hazard assessment by example

    Science.gov (United States)

    Mueller, Christof; Power, William; Fraser, Stuart; Wang, Xiaoming

    2015-01-01

    We investigated the influence of earthquake source complexity on the extent of inundation caused by the resulting tsunami. We simulated 100 scenarios with collocated sources of variable slip on the Hikurangi subduction interface in the vicinity of Hawke's Bay and Poverty Bay in New Zealand and investigated the tsunami effects on the cities of Napier and Gisborne. Rupture complexity was found to have a first-order effect on flow depth and inundation extent for local tsunami sources. The position of individual asperities in the slip distribution on the rupture interface control to some extent how severe inundation will be. However, predicting inundation extent in detail from investigating the distribution of slip on the rupture interface proves difficult. Assuming uniform slip on the rupture interface in tsunami models can underestimate the potential impact and extent of inundation. For example, simulation of an Mw 8.7 to Mw 8.8 earthquake with uniform slip reproduced the area that could potentially be inundated by equivalent nonuniform slip events of Mw 8.4. Deaggregation, to establish the contribution of different sources with different slip distributions to the probabilistic hazard, cannot be performed based on magnitude considerations alone. We propose two predictors for inundation severity based on the offshore tsunami wavefield using the linear wave equations in an attempt to keep costly simulations of full inundation to a minimum.

  8. The Jugsaipatna Anorthosite Complex, Eastern Ghats Belt, India: Magmatic lineage and petrogenetic implications

    Science.gov (United States)

    Mahapatro, S. N.; Nanda, J. K.; Tripathy, A. K.

    2010-04-01

    The Jugsaipatna Anorthosite Complex (JAC) in the Eastern Ghats Mobile Belt (India) comprises a central anorthosite - leuconorite - troctolitic norite core mantled by a rim of high-Al gabbronorite (HAG). Small dykes of ferrodiorite occur in the core region of the JAC. A lensoidal body of eucritic gabbronorite occurs in contact with leuconorite and outer gabbronorite rim. Baring ferrodiorites, the mafic members such as HAG, troctolitic norite and eucritic gabbronorite are not known in other anorthosite complexes of this high grade belt. The HAG is characterised by high Al 2O 3 content (17 wt.%), enriched ΣREE and LREE, absence of 'Eu-anomaly' and negative Sr anomaly and is, therefore inferred to be the source melt for the JAC suite of rocks. The eucritic gabbronorite comprising An-rich plagioclase and high-Al pyroxenes has a komatiitic affinity with high Cr-Ni contents and primitive REE patterns. Troctolitic norite, leuconorite and anorthosite are interpreted to be cumulate rocks fractionated from the HAG. The ferrodiorite with enriched Fe, Ti, P, Zr and REE abundances and a prominent 'negative Eu' anomaly corresponds to the residual melt of the plagioclase (+pyroxene) dominated fractionates that comprise anorthosite-leuconorite.

  9. New auroras on the roles of the Chromosomal Passenger Complex in cytokinesis: implications for cancer therapies

    Directory of Open Access Journals (Sweden)

    Pier Paolo eD'Avino

    2015-10-01

    Full Text Available The Chromosomal Passenger Complex (CPC, composed of a kinase component, Aurora B, the scaffolding subunit Inner Centromeric Protein (INCENP, Borealin, and Survivin, is a key regulator of cell division. It controls multiple events, from chromosome condensation in prophase to the final separation or abscission of the two daughter cells. The essential functions of the CPC during metaphase, however, have always hindered an accurate study of its role during cytokinesis. The recent development of small molecule inhibitors against Aurora B and the use of elegant technologies such as chemical genetics have offered new approaches to study the functions of the CPC at the end of cell division. Here we review the recent findings about the roles of the CPC in controlling the assembly of the cleavage furrow, central spindle and midbody. We will also discuss the crucial function of this complex in controlling abscission timing in order to prevent abscission when lagging chromatin is present at the cleavage site, thereby avoiding the formation of genetically abnormal daughter cells. Finally, we offer our perspective on how to exploit the potential therapeutic applications of inhibiting CPC activity during cytokinesis in cancer cells.

  10. Relative biological effectiveness for photons: implication of complex DNA double-strand breaks as critical lesions

    Science.gov (United States)

    Liang, Ying; Fu, Qibin; Wang, Xudong; Liu, Feng; Yang, Gen; Luo, Chunxiong; Ouyang, Qi; Wang, Yugang

    2017-03-01

    Current knowledge in radiobiology ascribes the adverse biological effects of ionizing radiation primarily to the induction of DNA double-strand breaks (DSBs), which is supposed to be potentially lethal and may be converted to lethal damage due to misrepair. Soft and ultrasoft x-rays have been found to bear elevated biological effectiveness for cell killing compared with conventional x-rays or 60Co γ-rays. This phenomenon is qualitatively interpreted as the increased level of DSB induction for low energy photons, however, a thorough quantitative reasoning is lacking. Here, we systematically compared the relative biological effectiveness (RBE) with relative DSB induction for photons from several hundreds of eV up to MeV. Although there is an approximate two-fold increase in the yields of DSB for low energy photons found in our calculation and a large number of experimental measurements, it is far from enough to account for the three- to four-fold increase in RBE. Further theoretical investigations show that DSB complexity (additional single-strand breaks and base damage within 10 base pairs) increases notably for low energy photons, which largely reconciles the discrepancy between RBE and DSB induction. Our theoretical results are in line with accumulating experimental evidence that complex DSBs are refractory to repair machinery and may contribute predominantly to the formation of lethal damage.

  11. Textural and microstructural development of the Barro Alto Complex: implications for seismic anisotropy

    Science.gov (United States)

    Silveira, Camila; Lagoeiro, Leonardo; Barbosa, Paola; Cavalcante, Geane Carolina; Ferreira, Filippe; Suita, Marcos; Conte, Thailli

    2017-04-01

    Crustal rheology is associated with the behavior of its constituents in response to stress and strain, while the seismic anisotropy is a property that can correlate these parameters. Seismic properties are strongly related to the microstructures and crystallographic preferred orientation (CPO) of the rocks. In this work, we study CPO-derived seismic anisotropy of metamorphosed gabbro-norites from the Barro Alto (Brazil central) layered complex. The EBSD technique was employed to analyze the crystallographic orientation of the main mineral assembly, diopside and feldspar. The Barro Alto complex belongs to the Tocantins Structural Province, developed between the Amazon and São Francisco cratons, during the Neoproterozoic Brasiliano orogenic cycle. This complex was formed by a mafic-ultramafic layered intrusion mylonitized and metamorphosed under granulite facies conditions. The mylonitic foliation shows compositional segregation into felsic and mafic bands. The samples are composed of porphyroclasts of plagioclase and diopside in a fine matrix of plagioclase, clinopyroxene, orthopyroxene and, less commonly, amphibole and biotite. The plagioclase porphyroclasts exhibit undulose extinction and core-mantle structure. In fine matrix samples the poles to a(100), b(010) and c(001) are randomly distributed in both phases. However, for increasing matrix grain size plagioclase grains shows maxima of a(100) poles sub-parallel to the foliation and b(010) normal to the foliation. The low value of the J index (2.4 for plagioclase and 1.8 for diopside) indicates poorly developed fabric. Misorientation profiles showing high frequency of small angle boundaries are typical of recrystallization by subgrain rotation mechanisms. The microstructural and CPO analyses suggest deformation controlled by diffusive processes. The CPO models were compared to models described in the literature, based on the anorthite + diopside assembly, since these are the major phases, and thus control the

  12. Petrogenesis and tectonic implications of Early Jurassic volcanic rocks of the Raohe accretionary complex, NE China

    Science.gov (United States)

    Wang, Zhi-Hui; Ge, Wen-Chun; Yang, Hao; Bi, Jun-Hui; Ji, Zheng; Dong, Yu; Xu, Wen-Liang

    2017-02-01

    The Raohe accretionary complex, located at the border between the Russian Far East and Northeastern China, is a significant part of the western Pacific Oceanic tectonic regime. Due to lack of precise age and geochemical constraints, the tectonic setting and petrogenesis of the magmatic rocks in this area remain undefined, resulting in debate about crustal growth mechanisms and subduction-related accretionary processes in Northeastern China. Here, we report whole-rock major and trace element and Sr-Nd isotope data, together with zircon U-Pb ages and in situ zircon Hf isotope data for calc-alkaline andesites, dacites, rhyolites, rhyolitic crystal tuffs, Nb-enriched andesites and basaltic andesites, and high-Mg andesites of the Raohe accretionary complex in NE China. Samples were collected from Late Triassic to Early Jurassic strata. However, geochronological results in this study indicated that the studied magmatism occurred in the Early Jurassic (187-174 Ma). The calc-alkaline volcanic rocks possess geochemical characteristics typical of arc magmas that form at active continental margins, such as moderate enrichments in large ion lithophile elements (LILEs) and light rare earth elements (LREEs), and depletions in high field strength elements (HFSEs). They have positive εHf(t) values of +3.4 to +10.6 and relatively high (87Sr/86Sr)i values of 0.7047-0.7102. While the Nb-enriched andesites and basaltic andesites have higher TiO2, Hf, Nb, and Zr contents and higher Nb/Ta (24.0-87.6), Nb/U (11.9-75.9), (Nb/Th)PM (0.67-2.70), and (Nb/La)PM (1.95-5.00) ratios than typical arc basalts. They have negative εNd(t) values (-5.5 to -6.0) and relatively variable (87Sr/86Sr)i values of 0.7047-0.7114, suggesting an origin via the partial melting of mantle wedge peridotite that had been metasomatized by slab-derived melt. The high-Mg volcanic rocks, characterized by high MgO and Mg#, TiO2, Al2O3, Cr, Ni, (La/Yb)N and (La/Sm)N, but low Ba/Th ratios, are geochemically similar to

  13. Complex adaptive HIV/AIDS risk reduction: Plausible implications from findings in Limpopo Province, South Africa.

    Science.gov (United States)

    Burman, Chris J; Aphane, Marota A

    2016-05-16

    This article emphasises that when working with complex adaptive systems it is possible to stimulate new social practices and/or cognitive perspectives that contribute to risk reduction, associated with reducing aggregate community viral loads. The process of achieving this is highly participatory and is methodologically possible because evidence of 'attractors' that influence the social practices can be identified using qualitative research techniques. Using findings from Limpopo Province, South Africa, we argue that working with 'wellness attractors' and increasing their presence within the HIV/AIDS landscape could influence aggregate community viral loads. While the analysis that is presented is unconventional, it is plausible that this perspective may hold potential to develop a biosocial response - which the Joint United Nations Programme on HIV and AIDS (UNAIDS) has called for - that reinforces the biomedical opportunities that are now available to achieve the ambition of ending AIDS by 2030.

  14. [International trade in health services and the medical industrial complex: implications for national health systems].

    Science.gov (United States)

    Santos, Maria Angelica Borges dos; Passos, Sonia Regina Lambert

    2010-08-01

    Health services have increasingly proven to be an innovative sector, gaining prominence in the medical industrial complex through expansion to public and international markets. International trade can foster economic development and redirect the resources and infrastructure available for healthcare in different countries in favorable or unfavorable directions. Wherever private providers play a significant role in government-funded healthcare, GATS commitments may restrict health policy options in subscribing countries. Systematic information on the impacts of electronic health services, medical tourism, health workers' migration, and foreign direct investment is needed on a case-by-case basis to build evidence for informed decision-making, so as to maximize opportunities and minimize risks of GATS commitments.

  15. Dystrophins, Utrophins, and Associated Scaffolding Complexes: Role in Mammalian Brain and Implications for Therapeutic Strategies

    Directory of Open Access Journals (Sweden)

    Caroline Perronnet

    2010-01-01

    Full Text Available Two decades of molecular, cellular, and functional studies considerably increased our understanding of dystrophins function and unveiled the complex etiology of the cognitive deficits in Duchenne muscular dystrophy (DMD, which involves altered expression of several dystrophin-gene products in brain. Dystrophins are normally part of critical cytoskeleton-associated membrane-bound molecular scaffolds involved in the clustering of receptors, ion channels, and signaling proteins that contribute to synapse physiology and blood-brain barrier function. The utrophin gene also drives brain expression of several paralogs proteins, which cellular expression and biological roles remain to be elucidated. Here we review the structural and functional properties of dystrophins and utrophins in brain, the consequences of dystrophins loss-of-function as revealed by numerous studies in mouse models of DMD, and we discuss future challenges and putative therapeutic strategies that may compensate for the cognitive impairment in DMD based on experimental manipulation of dystrophins and/or utrophins brain expression.

  16. Structure and Bonding in Heme-Nitrosyl Complexes and Implications for Biology

    Energy Technology Data Exchange (ETDEWEB)

    Lehnert, Nicolai; Scheidt, W. Robert; Wolf, Matthew W. [Michigan; (Notre)

    2016-09-13

    This review summarizes our current understanding of the geometric and electronic structures of ferrous and ferric heme–nitrosyls, which are of key importance for the biological functions and transformations of NO. In-depth correlations are made between these properties and the reactivities of these species. Here, a focus is put on the discoveries that have been made in the last 10 years, but previous findings are also included as necessary. Besides this, ferrous heme–nitroxyl complexes are also considered, which have become of increasing interest recently due to their roles as intermediates in NO and multiheme nitrite reductases, and because of the potential role of HNO as a signaling molecule in mammals. In recent years, computational methods have received more attention as a means of investigating enzyme reaction mechanisms, and some important findings from these theoretical studies are also highlighted in this chapter.

  17. The Formation of Complex Organic Compounds in Astrophysical Ices and their Implications for Astrobiology

    Science.gov (United States)

    Sandford, Scott A.

    2015-01-01

    Ices in astrophysical environments are generally dominated by very simple molecules like H2O, CH3OH, CH4, NH3, CO, CO2, etc, although they likely contain PAHs as well. These molecules, particularly H2O, are of direct interest to astrobiology in-and-of themselves since they represent some of the main carriers of the biogenic elements C, H, O, and N. In addition, these compounds are present in the dense interstellar clouds in which new stars and planetary systems are formed and may play a large role in the delivery of volatiles and organics to the surfaces of new planets. However, these molecules are all far simpler than the more complex organic compounds found in living systems.

  18. Complex

    African Journals Online (AJOL)

    CLEMENT O BEWAJI

    Schiff bases and their complex compounds have been studied for their .... establishing coordination of the N–(2 – hydroxybenzyl) - L - α - valine Schiff base ..... (1967); “Spectrophotometric Identification of Organic Compounds”, Willey, New.

  19. Electron-microprobe study of chromitites associated with alpine ultramafic complexes and some genetic implications

    Science.gov (United States)

    Bird, M.L.

    1978-01-01

    Electron-microprobe and petrographic studies of alpine chromite deposits from around the world demonstrate that they are bimodal with respect to the chromic oxide content of their chromite. The two modes occur at 54 ? 4 and 37 ? 3 weight per cent chromic oxide corresponding to chromite designated as high-chromium and high-aluminum chromite respectively. The high-chromium chromite occurs exclusively with highly magnesian olivine (Fo92-97) and some interstitial diopside. The high-aluminum chromite is associated with more ferrous olivine (Fo88-92), diopside, enstatite, and feldspar. The plot of the mole ratios Cr/(Cr+Al+Fe3+) vs. Mg/(Mg+Fe2+) usually presented for alpine chromite is shown to have a high-chromium, high-iron to low-chromium, low-iron trend contrary to that shown by stratiform chromite. This trend is characteristic of alpine type chromite and is termed the alpine trend. However, a trend similar to that for startiform chromite is discernable on the graph for the high-chromium chromite data. This latter trend is well-developed at Red Mountain, Seldovia, Alaska. Analysis of the iron-magnesium distribution coefficient, Kd=(Fe/Mg)ol/(Fe/Mg)ch, between olivine and chromite shows that Kd for the high-chromium chromite from all ultramafic complexes has essentially the same constant value of .05 while the distribution coefficient for the high-aluminum chromite varies with composition of the chromite. These distribution coefficients are also characteristic of alpine-type chromites. The constant value for Kd for the high-chromium chromite and associated high-magnesium olivine in all alpine complexes suggests that they all crystallized under similar physico-chemical conditions. The two types of massive chromite and their associations of silicate minerals suggest the possibility of two populations with different origins. Recrystallization textures associated with the high-aluminum chromite together with field relationships between the gabbro and the chromite pods

  20. Tectonic implications of a paleomagnetic study of the Sarmiento Ophiolitic Complex, southern Chile

    Science.gov (United States)

    Rapalini, A. E.; Calderón, M.; Singer, S.; Hervé, F.; Cordani, U.

    2008-06-01

    A paleomagnetic study was carried out on the Late Jurassic Sarmiento Ophiolitic Complex (SOC) exposed in the Magallanes fold and thrust belt in the southern Patagonian Andes (southern Chile). This complex, mainly consisting of a thick succession of pillow-lavas, sheeted dikes and gabbros, is a seafloor remnant of the Late Jurassic to Early Cretaceous Rocas Verdes basin that developed along the south-western margin of South America. Stepwise thermal and alternating field demagnetization permitted the isolation of a post-folding characteristic remanence, apparently carried by fine grain (SD?) magnetite, both in the pillow-lavas and dikes. The mean "in situ" direction for the SOC is Dec: 286.9°, Inc: - 58.5°, α95: 6.9°, N: 11 (sites). Rock magnetic properties, petrography and whole-rock K-Ar ages in the same rocks are interpreted as evidence of correlation between remanence acquisition and a greenschist facies metamorphic overprint that must have occurred during latest stages or after closure and tectonic inversion of the basin in the Late Cretaceous. The mean remanence direction is anomalous relative to the expected Late Cretaceous direction from stable South America. Particularly, a declination anomaly over 50° is suggestively similar to paleomagnetically interpreted counter clockwise rotations found in thrust slices of the Jurassic El Quemado Fm. located over 100 km north of the study area in Argentina. Nevertheless, a significant ccw rotation of the whole SOC is difficult to reconcile with geologic evidence and paleogeographic models that suggest a narrow back-arc basin sub-parallel to the continental margin. A rigid-body 30° westward tilting of the SOC block around a horizontal axis trending NNW, is considered a much simpler explanation, being consistent with geologic evidence. This may have occurred as a consequence of inverse reactivation of old normal faults, which limit both the SOC exposures and the Cordillera Sarmiento to the East. The age of tilting

  1. Evolution of Migmatitic Granulite Complexes: implications from Lapland Granulite Belt, Part I: metamorphic geology

    Directory of Open Access Journals (Sweden)

    Pekka Tuisku

    2006-01-01

    Full Text Available The Palaeoproterozoic Lapland granulite belt was juxtaposed between Archaean and Proterozoic terrains in the NE part of the Fennoscandian Shield concurrently with the accretion of Svecofennian arc complexes at ~1.9 Ga. The belt consists mainly of aluminous migmatiticmetagreywackes. Abundant noritic to enderbitic magmas were intruded concordantly into the metasediments and were probably an important heat source for metamorphism, which took place during the crystallization of the magmas. This is supported by structural and contact relations of metasediments and igneous rocks, and by the lack progressive metamorphic reaction textures in the igneous rock series. The peak of metamorphism took place above the dehydration melting temperature of the biotite-sillimanite-plagioclase-quartz assemblageat 750−850°C and 5−8.5 kbar which lead to formation of a restitic palaeosome and peraluminous granitic melt in metapelites. Subsequently, the rocks were decompressed and cooled below the wet melting temperature of pelitic rocks (650°C under the stability field of andalusite coexisting with potassium feldspar (2−3 kbar. Cooling was accompanied by the crystallization of the neosomes, often carrying aluminium-rich phases. Postmetamorphic duplexing of the LGB is clearly seen in the distribution of calculated PT conditions.

  2. General Intelligence (g): Overview of a Complex Construct and Its Implications for Genetics Research.

    Science.gov (United States)

    Plucker, Jonathan A; Shelton, Amy L

    2015-01-01

    Current technology has dramatically increased the prevalence of studies to establish the genetic correlates of a wide variety of human characteristics, including not only the physical attributes that determine what we look like and the risk of physiological disease but also the psychological and cognitive characteristics that often define who we are as individuals. Perhaps one of the most deeply personal and often controversial characteristics is the concept of general intelligence, known in the psychological literature as "g." As with the genetic study of any complex trait, the first step in studying the genetics of g is to carefully define the characteristic of interest. For g, this entails establishing what intelligence means and providing a clear operational definition for how it will be measured. In this paper, we provide a brief historical and theoretical overview of the construct of general intelligence, describe its relationship to the contemporary measurement of intelligence, and discuss these concepts in light of the challenges associated with defining g as a characteristic in the study of genetics.

  3. Mechanistic implications in the phosphatase activity of Mannich-based dinuclear zinc complexes with theoretical modeling.

    Science.gov (United States)

    Sanyal, Ria; Zhang, Xuepeng; Kundu, Priyanka; Chattopadhyay, Tanmay; Zhao, Cunyuan; Mautner, Franz A; Das, Debasis

    2015-03-02

    An "end-off" compartmental ligand has been synthesized by an abnormal Mannich reaction, namely, 2-[bis(2-methoxyethyl)aminomethyl]-4-isopropylphenol yielding three centrosymmetric binuclear μ-phenoxozinc(II) complexes having the molecular formula [Zn2(L)2X2] (Zn-1, Zn-2, and Zn-3), where X = Cl(-), Br (-), and I (-), respectively. X-ray crystallographic analysis shows that the ZnO3NX chromophores in each molecule form a slightly distorted trigonal-bipyramidal geometry (τ = 0.55-0.68) with an intermetallic distance of 3.068, 3.101, and 3.083 Å (1-3, respectively). The spectrophotometrical investigation on their phosphatase activity established that all three of them possess significant hydrolytic efficiency. Michaelis-Menten-derived kinetic parameters indicate that the competitiveness of the rate of P-O bond fission employing the phosphomonoester (4-nitrophenyl)phosphate in 97.5% N,N-dimethylformamide is 3 > 1 > 2 and the kcat value lies in the range 9.47-11.62 s(-1) at 298 K. Theoretical calculations involving three major active catalyst forms, such as the dimer-cis form (D-Cis), the dimer-trans form (D-Trans), and the monoform (M-1 and M-2), systematically interpret the reaction mechanism wherein the dimer-cis form with the binuclear-bridged hydroxide ion acting as the nucleophile and one water molecule playing a role in stabilizing the leaving group competes as the most favored pathway.

  4. The AIDS dementia complex: clinical and basic neuroscience with implications for novel molecular therapies.

    Science.gov (United States)

    Navia, B A; Rostasy, K

    2005-10-01

    The AIDS dementia complex (ADC, also referred to as HIV-associated cognitive impairment) is a common disorder among HIV-infected patients associated with both inflammatory and neurodegenerative processes. This review describes recent advances in the clinical and basic neurosciences of HIV infection and discusses the multivariable nature of what has become a chronic disorder in the context of highly active antiretroviral therapies (HAART). Since its initial description twenty years ago, advances in cell and molecular biology along with those in neuroimaging have furthered our understanding of the underlying pathogenic mechanisms. The clinical and neuropsychological profile of ADC is generally consistent with a "frontal-subcortical" pattern of injury. Neuropathogenesis is largely driven by indirect mechanisms mediated by infected, or more commonly, immune activated macrophages, which secrete viral and host-derived factors. Magnetic resonance spectroscopy (MRS) provides a robust in vivo method to measure the inflammatory and neurotoxic events triggered by these factors and their associated signals. Although the use of combined or highly active antiretroviral therapies (HAART) has significantly improved survival rates, cerebral injury and cognitive impairment remain common events. Factors such as aging and chronic infection will likely impact the course of this disease, its pathogenesis, and treatment. The combined observations presented in this review suggest a number of critical areas for future inquiry.

  5. In vivo measurements of the triceps surae complex architecture in man: implications for muscle function.

    Science.gov (United States)

    Maganaris, C N; Baltzopoulos, V; Sargeant, A J

    1998-10-15

    1. The objectives of this study were to (1) quantify experimentally in vivo changes in pennation angle, fibre length and muscle thickness in the triceps surae complex in man in response to changes in ankle position and isometric plantarflexion moment and (2) compare changes in the above muscle architectural characteristics occurring in the transition from rest to a given isometric plantarflexion intensity with the estimations of a planimetric muscle model assuming constant thickness and straight muscle fibres. 2. The gastrocnemius medialis (GM), gastrocnemius lateralis (GL) and soleus (SOL) muscles of six males were scanned with ultrasonography at different sites along and across the muscle belly at rest and during maximum voluntary contraction (MVC) trials at ankle angles of -15 deg (dorsiflexed direction), 0 deg (neutral position), +15 deg (plantarflexed direction) and +30 deg. Additional images were taken at 80, 60, 40 and 20% of MVC at an ankle angle of 0 deg. 3. In all three muscles and all scanned sites, as ankle angle increased from -15 to +30 deg, pennation increased (by 6-12 deg, 39-67%, P MVC) and fibre length decreased (by 15-28 mm, 32-34%, P MVC). Thickness in GL and SOL increased during MVC compared with rest (by 5-7 mm, 36-47%, P 0.05) between rest and MVC. 4. At any given ankle angle the model underestimated changes in GL and SOL occurring in the transition from rest to MVC in pennation angle (by 9-12 deg, 24-38%, P architecture during contraction compared with rest.

  6. Structures of trihydroxynaphthalene reductase-fungicide complexes: implications for structure-based design and catalysis

    Energy Technology Data Exchange (ETDEWEB)

    Liao, D.-I.; Basarab, G.S.; Gatenby, A.A.; Valent, B.; Jordan, D.B. (DuPont)

    2010-03-08

    Trihydroxynaphthalene reductase catalyzes two intermediate steps in the fungal melanin biosynthetic pathway. The enzyme, a typical short-chain dehydrogenase, is the biochemical target of three commercial fungicides. The fungicides bind preferentially to the NADPH form of the enzyme. Three X-ray structures of the Magnaporthe grisea enzyme complexed with NADPH and two commercial and one experimental fungicide were determined at 1.7 {angstrom} (pyroquilon), 2.0 {angstrom} (2,3-dihydro-4-nitro-1H-inden-1-one, 1), and 2.1 {angstrom} (phthalide) resolutions. The chemically distinct inhibitors occupy similar space within the enzyme's active site. The three inhibitors share hydrogen bonds with the side chain hydroxyls of Ser-164 and Tyr-178 via a carbonyl oxygen (pyroquilon and 1) or via a carbonyl oxygen and a ring oxygen (phthalide). Active site residues occupy similar positions among the three structures. A buried water molecule that is hydrogen bonded to the NZ nitrogen of Lys-182 in each of the three structures likely serves to stabilize the cationic form of the residue for participation in catalysis. The pro S hydrogen of NADPH (which is transferred as a hydride to the enzyme's naphthol substrates) is directed toward the carbonyl carbon of the inhibitors that mimic an intermediate along the reaction coordinate. Modeling tetrahydroxynaphthalene and trihydroxynaphthalene in the active site shows steric and electrostatic repulsion between the extra hydroxyl oxygen of the former substrate and the sulfur atom of Met-283 (the C-terminal residue), which accounts, in part, for the 4-fold greater substrate specificity for trihydroxynaphthalene over tetrahydroxynaphthalene.

  7. Building complexity: an in vitro study of cytoplasmic dynein with in vivo implications.

    Science.gov (United States)

    Mallik, Roop; Petrov, Dmitri; Lex, S A; King, S J; Gross, S P

    2005-12-06

    Cytoplasmic dynein is the molecular motor responsible for most retrograde microtubule-based vesicular transport. In vitro single-molecule experiments suggest that dynein function is not as robust as that of kinesin-1 or myosin-V because dynein moves only a limited distance (approximately 800 nm) before detaching and can exert a modest (approximately 1 pN) force. However, dynein-driven cargos in vivo move robustly over many microns and exert forces of multiple pN. To determine how to go from limited single-molecule function to robust in vivo transport, we began to build complexity in a controlled manner by using in vitro experiments. We show that a single cytoplasmic dynein motor frequently transitions into an off-pathway unproductive state that impairs net transport. Addition of a second (and/or third) dynein motor, so that cargos are moved by two (or three) motors rather than one, is sufficient to recover several properties of in vivo motion; such properties include long cargo travels, robust motion, and increased forces. Part of this improvement appears to arise from selective suppression of the unproductive state of dynein rather than from a fundamental change in dynein's mechanochemical cycle. Multiple dyneins working together suppress shortcomings of a single motor and generate robust motion under in vitro conditions. There appears to be no need for additional cofactors (e.g., dynactin) for this improvement. Because cargos are often driven by multiple dyneins in vivo, our results show that changing the number of dynein motors could allow modulation of dynein function from the mediocre single-dynein limit to robust in vivo-like dynein-driven motion.

  8. Abrupt clinical onset of Chiari type I/syringomyelia complex: clinical and physiopathological implications.

    Science.gov (United States)

    Massimi, Luca; Della Pepa, Giuseppe M; Caldarelli, Massimo; Di Rocco, Concezio

    2012-07-01

    Chiari I malformation (CI) continues to raise great interest among physicians due to the larger and larger number of newly diagnosed cases. The clinical and radiological picture and the management options of such a chronic disease are well acknowledged as well as those of the associated syringomyelia. Little is known, on the other hand, about abrupt clinical onset following decompensation of CI/syringomyelia complex. This review on the sudden onset of these two conditions shows that this is a very rare phenomenon; only 41 cases are being reported in the last three decades. In all these cases, acute onset was referable to CI/syringomyelia and the clinical course quickly precipitated. Motor deficits (36.5 %), respiratory failure (29 %), cranial nerve palsy (17 %), and cardiac arrest (14.5 %) were the most common findings, thus confirming that abrupt onset may have severe and life-threatening consequences. Indeed, sudden or early mortality accounted for 19.5 % of cases. In spite of that, most of the surviving subjects had an excellent outcome following either surgical or medical/rehabilitation treatment. Physiopathology of abrupt onset is attributed to the acute compression of the brainstem/upper cervical spinal cord by ectopic tonsils and syringobulbia/syringomyelia, frequently precipitated by a minor injury, followed by impairment of medullary baroreceptors and midbrain reticular substance (cardiac arrest, syncope), medullary chemoreceptors and phrenic nerve nuclei (respiratory failure), lower cranial nerve nuclei (cardiac arrest, cranial nerve palsy), and pyramidal tracts (motor deficits). About 87 % of patients of this review were asymptomatic prior to their acute onset. The problem of the management of asymptomatic subjects is still open.

  9. Opposing shear senses in a subdetachment mylonite zone: Implications for core complex mechanics

    Science.gov (United States)

    Cooper, Frances J.; Platt, John P.; Platzman, Ellen S.; Grove, Marty J.; Seward, Gareth

    2010-08-01

    Global studies of metamorphic core complexes and low-angle detachment faults have highlighted a fundamental problem: Since detachments excise crustal section, the relationship between the mylonitic rocks in their footwalls and the brittle deformation in their hanging walls is commonly unclear. Mylonites could either reflect ductile deformation related to exhumation along the detachment fault, or they could be a more general feature of the extending middle crust that has been "captured" by the detachment. In the first case we would expect the kinematics of the mylonite zone to mirror the sense of movement on the detachment; in the second case both the direction and sense of shear in the mylonites could be different. The northern Snake Range décollement (NSRD) is a classic Basin and Range detachment fault with a well-documented top-east of displacement. We present structural, paleomagnetic, geochronological, and geothermometric evidence to suggest that the mylonite zone below the NSRD locally experienced phases of both east- and west-directed shear, inconsistent with movement along a single detachment fault. We therefore propose that the footwall mylonites represent a predetachment discontinuity in the middle crust that separated localized deformation above from distributed crustal flow below (localized-distributed transition (LDT)). The mylonites were subsequently captured by a moderately dipping brittle detachment that soled down to the middle crust and exhumed them around a rolling hinge into a subhorizontal orientation at the surface, producing the present-day NSRD. In this interpretation the brittle hanging wall represents a series of rotated upper crustal normal faults, whereas the mylonitic footwall represents one or more exhumed middle crustal discontinuities (LDTs).

  10. Rethinking the Galapagos Islands as a Complex Social-Ecological System: Implications for Conservation and Management

    Directory of Open Access Journals (Sweden)

    José A. González

    2008-12-01

    Full Text Available The Galapagos Islands are among the most renowned natural sites in the world. Unlike other oceanic archipelagos, the ecological and evolutionary processes characteristic of Galapagos have been minimally affected by human activities, and the archipelago still retains most of its original, unique biodiversity. However, several recent reports suggest that the development model has turned unsustainable and that the unique values of the archipelago might be seriously at risk. In response to international concern, UNESCO added Galapagos to the list of World Heritage in Danger in 2007. Our goal was to provide new insights into the origins of the present-day crisis and suggest possible management alternatives. To this end, we re-examined the Galapagos situation from a broad systems perspective, conceptualizing the archipelago as a complex social-ecological system. Past, present, and possible future trends were explored using the resilience theory as a perspective for understanding the dynamics of the system. Four major historical periods were characterized and analyzed using Holling's adaptive cycle metaphor. The current Galapagos situation was characterized as a prolonged series of crisis events followed by renewal attempts that have not yet been completed. Three plausible future scenarios were identified, with tourism acting as the primary driver of change. The current tourism model reduces the system's resilience through its effects on the economy, population growth, resource consumption, invasive species arrival, and lifestyle of the island residents. Opportunities to reorganize and maintain a desirable state do exist. However, strong political and management decisions are urgently needed to avoid an irreversible shift to a socially and environmentally undesirable regime. Key measures to achieve a new sustainability paradigm for Galapagos include modifying traditional practices to produce a more adaptive resilience-based co-management model

  11. Implications of Small-Scale Flow Features to Modeling Dispersion over Complex Terrain.

    Science.gov (United States)

    Banta, R. M.; Olivier, L. D.; Gudiksen, P. H.; Lange, R.

    1996-03-01

    Small-scale, topographically forced wind systems often have a strong influence on flow over complex terrain. A problem is that these systems are very difficult to measure, because of their limited spatial and temporal extent. They can be important, however, in the atmospheric transport of hazardous materials. For example, a nocturnal exit jet-a narrow stream of cold air-which flowed from Eldorado Canyon at the interface between the Rocky Mountains and the Colorado plains near the Rocky Flats Plant (RFP), swept over RFP for about 3 h in the middle of the night of 4 5 February 1991. It extended in depth from a few tens of meters to approximately 800 m above the ground. Because the jet was so narrow (2 km wide), it was poorly sampled by the meteorological surface mesonet, but it did prove to have an effect on the dispersion of tracer material released from RFP, producing a secondary peak in measured concentration to the southeast of RFP. The existence and behavior of the jet was documented by Environment Technology Laboratoy's Doppler lidar system, a scanning, active remote-sensing system that provides fine-resolution wind measurements. The lidar was deployed as a part of a wintertime study of flow and dispersion in the RFP vicinity during February 1993.The MATHEW-ADPIC atmospheric dispersion model was run using the case study data from this night. It consists of three major modules: an interpolation scheme; MATHEW, a diagnostic wind-flow algorithm that calculates a mass-consistent interpolated flow; and ADPIC, a diffusion algorithm. The model did an adequate job of representing the main lobe of the tracer transport, but the secondary lobe resulting from the Eldorado Canyon exit jet was absent from the model result. Because the jet was not adequately represented in the input data, it did not appear in the modeled wind field. Thus, the effects of the jet on the transport of tracer material were not properly simulated by the diagnostic model.

  12. Adaptive practices in heart failure care teams: implications for patient-centered care in the context of complexity

    Directory of Open Access Journals (Sweden)

    Tait GR

    2015-08-01

    member and could extend to other settings. Conclusion: Adaptive practices emerged unpredictably and were variably experienced by team members. Our study offers an empirically grounded explanation of how HF care teams self-organize and how adaptive practices emerge from nonlinear interdependencies among diverse agents. We use these insights to reframe the question of palliative care integration, to ask how best to foster palliative care-aligned adaptive practices in HF care. This work has implications for health care’s growing challenge of providing care to those with chronic medical illness in complex, team-based settings. Keywords: palliative care, qualitative, complex adaptive system, multimorbidity, health care teams

  13. Architecture of the Flagellar Switch Complex of Escherichia coli: Conformational Plasticity of FliG and Implications for Adaptive Remodeling.

    Science.gov (United States)

    Kim, Eun A; Panushka, Joseph; Meyer, Trevor; Carlisle, Ryan; Baker, Samantha; Ide, Nicholas; Lynch, Michael; Crane, Brian R; Blair, David F

    2017-03-01

    Structural models of the complex that regulates the direction of flagellar rotation assume either ~34 or ~25 copies of the protein FliG. Support for ~34 came from cross-linking experiments identifying an inter-subunit contact most consistent with that number; support for ~25 came from the observation that flagella can assemble and rotate when FliG is genetically fused to FliF, for which the accepted number is ~25. Here, we have undertaken cross-linking and other experiments to address more fully the question of FliG number. The results indicate a copy number of ~25 for FliG. An interaction between the C-terminal and middle domains, which has been taken to support a model with ~34 copies, is also supported. To reconcile the interaction with a FliG number of ~25, we hypothesize conformational plasticity in an inter-domain segment of FliG that allows some subunits to bridge gaps created by the number mismatch. This proposal is supported by mutant phenotypes and other results indicating that the normally helical segment adopts a more extended conformation in some subunits. The FliG amino-terminal domain is organized in a regular array with dimensions matching a ring in the upper part of the complex. The model predicts that FliG copy number should be tied to that of FliF, whereas FliM copy number can increase or decrease according to the number of FliG subunits that adopt the extended conformation. This has implications for the phenomenon of adaptive switch remodeling, in which FliM the copy number varies to adjust the bias of the switch.

  14. Uncoupling GP1 and GP2 expression in the Lassa virus glycoprotein complex: implications for GP1 ectodomain shedding

    Directory of Open Access Journals (Sweden)

    Illick Kerry A

    2008-12-01

    Full Text Available Abstract Background Sera from convalescent Lassa fever patients often contains antibodies to Lassa virus (LASV glycoprotein 1 (GP1, and glycoprotein 2 (GP2; Immunization of non-human primates with viral vectors expressing the arenaviral glycoprotein complex (GPC confers full protective immunity against a lethal challenge with LASV. Thus, the development of native or quasi native recombinant LASV GP1 and GP2 as soluble, uncoupled proteins will improve current diagnostics, treatment, and prevention of Lassa fever. To this end, mammalian expression systems were engineered for production and purification of secreted forms of soluble LASV GP1 and GP2 proteins. Results Determinants for mammalian cell expression of secreted uncoupled Lassa virus (LASV glycoprotein 1 (GP1 and glycoprotein 2 (GP2 were established. Soluble GP1 was generated using either the native glycoprotein precursor (GPC signal peptide (SP or human IgG signal sequences (s.s.. GP2 was secreted from cells only when (1 the transmembrane (TM domain was deleted, the intracellular domain (IC was fused to the ectodomain, and the gene was co-expressed with a complete GP1 gene in cis; (2 the TM and IC domains were deleted and GP1 was co-expressed in cis; (3 expression of GP1 was driven by the native GPC SP. These data implicate GP1 as a chaperone for processing and shuttling GP2 to the cell surface. The soluble forms of GP1 and GP2 generated through these studies were secreted as homogeneously glycosylated proteins that contained high mannose glycans. Furthermore, observation of GP1 ectodomain shedding from cells expressing wild type LASV GPC represents a novel aspect of arenaviral glycoprotein expression. Conclusion These results implicate GP1 as a chaperone for the correct processing and shuttling of GP2 to the cell surface, and suggest that native GPC SP plays a role in this process. In the absence of GP1 and GPC SP the GP2 protein may be processed by an alternate pathway that produces

  15. Structural analysis and thermal remote sensing of the Los Humeros Volcanic Complex: Implications for volcano structure and geothermal exploration

    Science.gov (United States)

    Norini, G.; Groppelli, G.; Sulpizio, R.; Carrasco-Núñez, G.; Dávila-Harris, P.; Pellicioli, C.; Zucca, F.; De Franco, R.

    2015-08-01

    The Los Humeros Volcanic Complex (LHVC) is an important geothermal target in the Trans-Mexican Volcanic Belt. Understanding the structure of the LHVC and its influence on the occurrence of thermal anomalies and hydrothermal fluids is important to get insights into the interplay between the volcano-tectonic setting and the characteristics of the geothermal resources in the area. In this study, we present a structural analysis of the LHVC, focused on Quaternary tectonic and volcano-tectonic features, including the areal distribution of monogenetic volcanic centers. Morphostructural analysis and structural field mapping revealed the geometry, kinematics and dynamics of the structural features in the study area. Also, thermal infrared remote sensing analysis has been applied to the LHVC for the first time, to map the main endogenous thermal anomalies. These data are integrated with newly proposed Unconformity Bounded Stratigraphic Units, to evaluate the implications for the structural behavior of the caldera complex and geothermal field. The LHVC is characterized by a multistage formation, with at least two major episodes of caldera collapse: Los Humeros Caldera (460 ka) and Los Potreros Caldera (100 ka). The study suggests that the geometry of the first collapse recalls a trap-door structure and impinges on a thick volcanic succession (10.5-1.55 Ma), now hosting the geothermal reservoir. The main ring-faults of the two calderas are buried and sealed by the widespread post-calderas volcanic products, and for this reason they probably do not have enough permeability to be the main conveyers of the hydrothermal fluid circulation. An active, previously unrecognized fault system of volcano-tectonic origin has been identified inside the Los Potreros Caldera. This fault system is the main geothermal target, probably originated by active resurgence of the caldera floor. The active fault system defines three distinct structural sectors in the caldera floor, where the

  16. Trauma complexo e suas implicações diagnósticas Complex trauma and diagnostic implications

    Directory of Open Access Journals (Sweden)

    Thiago Wendt Viola

    2011-01-01

    was to review the definition of trauma, presenting the concept of complex trauma and investigating its clinical implications and the diagnostic categories deriving from this construct. Important questions are raised about differences between complex trauma and PTSD, followed by an investigation of PTSD symptoms and comorbid disorders, as well as the limitations of PTSD diagnosis. Taking into consideration the psychopathological impact associated with complex trauma, the article discusses the possibility of including a new diagnostic category in the 5th edition of the Diagnostic and Statistical Manual of Mental Disorders is discussed, as part of the spectrum of post-traumatic psychopathologies.

  17. Complexity of Work-Life Identities and Policy Development: Implications for Work-Life in Higher Education

    Science.gov (United States)

    Lester, Jaime

    2016-01-01

    This chapter describes the themes that emerged in this volume with attention to important policy implications on the federal, state, and institutional levels. Recommendations for future research are provided.

  18. Repeated Listening Increases the Liking for Music Regardless of Its Complexity: Implications for the Appreciation and Aesthetics of Music

    Science.gov (United States)

    Madison, Guy; Schiölde, Gunilla

    2017-01-01

    Psychological and aesthetic theories predict that music is appreciated at optimal, peak levels of familiarity and complexity, and that appreciation of music exhibits an inverted U-shaped relationship with familiarity as well as complexity. Because increased familiarity conceivably leads to improved processing and less perceived complexity, we test whether there is an interaction between familiarity and complexity. Specifically, increased familiarity should render the music subjectively less complex, and therefore move the apex of the U curve toward greater complexity. A naturalistic listening experiment was conducted, featuring 40 music examples (ME) divided by experts into 4 levels of complexity prior to the main experiment. The MEs were presented 28 times each across a period of approximately 4 weeks, and individual ratings were assessed throughout the experiment. Ratings of liking increased monotonically with repeated listening at all levels of complexity; both the simplest and the most complex MEs were liked more as a function of listening time, without any indication of a U-shaped relation. Although the MEs were previously unknown to the participants, the strongest predictor of liking was familiarity in terms of having listened to similar music before, i.e., familiarity with musical style. We conclude that familiarity is the single most important variable for explaining differences in liking among music, regardless of the complexity of the music. PMID:28408864

  19. Complex Parts, Complex Data: Why You Need to Understand What Radiation Single Event Testing Data Does and Doesn't Show and the Implications Thereof

    Science.gov (United States)

    Label, Kenneth A.; Berg, Melanie D.

    2016-01-01

    Electronic parts (integrated circuits) have grown in complexity such that determining all failure modes and risks from single particle event testing is impossible. In this presentation, the authors will present why this is so and provide some realism on what this means. Its all about understanding actual risks and not making assumptions.

  20. Complex Parts, Complex Data: Why You Need to Understand What Radiation Single Event Testing Data Does and Doesn't Show and the Implications Thereof

    Science.gov (United States)

    LaBel, Kenneth A.; Berg, Melanie D.

    2015-01-01

    Electronic parts (integrated circuits) have grown in complexity such that determining all failure modes and risks from single particle event testing is impossible. In this presentation, the authors will present why this is so and provide some realism on what this means. Its all about understanding actual risks and not making assumptions.

  1. Geochemistry of Gneisses from Dabie Complex and Tongbai Complex in Qinling-Tongbai-Dabie Orogenic Belt: Implications for Location of Yangtze-Sino-Korean Suture

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The Dabie complex (DC) and the Tongbai complex (TBC) are separately distributed in the middle and eastern parts of the Qinling-Tongbai-Dabie orogenic belt. In this study, the Dabie complex can be divided into two units: one is the complex with no high pressure and ultrahigh pressure metamorphic rocks (DC1), and the other is the complex containing coesite-bearing eclogite lenses or boudins (DC2). Gneisses are predominant in the TBC, DC1 and DC2. Major and trace element data of gneisses in the TBC, DC1 and DC2 show them to be the orthogneisses. The gneisses in the DC1 have higher incompatible element contents and higher ratios of w(K2O)/w(Na2O) and w(La)n/w(Yb)n than those in the DC2. However, no obvious differences arise in other element contents and the ratios of w(La)/w( Nb), w(Nb)/w(Th), w(Nb)/w(Hf), w(Ba)/w(La), w(Sm)/w(Nd) and w(Th)/w(U) between the gneisses in the DC2 and those in the DC1. These observations suggest that the protoliths of the gneisses in the DC2 have affinities to those in the DC1. The difference between the DC1 and DC2 gneisses in incompat- ible element contents could reflect the difference in their partial melting extent. The TBC gneisses are geochemically similar to the DC1 gneisses, suggesting that the TBC and DC1 gneisses are the same lithologic unit in the Qinling-Tongbai-Dabie orogenic belt and that they have experienced similar formations and evolution histories. In the Qinling-Tongbai area, the TBC is part of the northern blocks of the Yangtze craton. Given the similarity of geochemical characteristics, the rock assemblage and the ages between the TBC and DC1 gneisses, we can infer that the Dabie complex also belongs to the northern blocks of the Yangtze craton. In terms of the distribution of eciogites and metamorphic facies, we propose that the collisionai suture in the Dabie area is distributed along the Xiaotian-Mozitan fault, at the contact with the Shang-Dan-Tongbai fault to the west.

  2. Genomics era and complex disorders: Implications of GWAS with special reference to coronary artery disease, type 2 diabetes mellitus, and cancers

    Directory of Open Access Journals (Sweden)

    R Pranavchand

    2016-01-01

    Full Text Available The Human Genome Project (HGP has identified millions of single nucleotide polymorphisms (SNPs and their association with several diseases, apart from successfully characterizing the Mendelian/monogenic diseases. However, the dissection of precise etiology of complex genetic disorders still poses a challenge for human geneticists. This review outlines the landmark results of genome-wide association studies (GWAS with respect to major complex diseases - Coronary artery disease (CAD, type 2 diabetes mellitus (T2DM, and predominant cancers. A brief account on the current Indian scenario is also given. All the relevant publications till mid-2015 were accessed through web databases such as PubMed and Google. Several databases providing genetic information related to these diseases were tabulated and in particular, the list of the most significant SNPs identified through GWAS was made, which may be useful for designing studies in functional validation. Post-GWAS implications and emerging concepts such as epigenomics and pharmacogenomics were also discussed.

  3. ADP-regulation of mitochondrial free radical production is different with complex I- or complex II-linked substrates: implications for the exercise paradox and brain hypermetabolism.

    Science.gov (United States)

    Herrero, A; Barja, G

    1997-06-01

    In agreement with classic studies, succinate-supplemented rat and pigeon heart and nonsynaptic brain mitochondrial free radical production is stopped by ADP additions causing the stimulation of respiration from State 4 to State 3. Nevertheless, with Complex I-linked substrates, mitochondria produce free radicals in State 3 at rates similar or somewhat higher than during resting respiration. The absence of sharp increases in free radical production during intense respiration is possible due to strong decreases of free radical leak in State 3. The results indicate that Complex I is the main mitochondrial free radical generator in State 3, adding to its already known important generation of active oxygen species in State 4. The observed rate of mitochondrial free radical production with Complex I-linked substrates in the active State 3 can help to explain two paradoxes: (a) the lack of massive muscle oxidative damage and shortening of life span due to exercise, in spite of up to 23-fold increases of oxygen consumption together with the very low levels of antioxidants present in heart, skeletal muscle, and brain; (b) the presence of some degree of oxidative stress during exercise and hyperactivity in spite of the stop of mitochondrial free radical production by ADP with succinate as substrate.

  4. 40Ar/ 39Ar mineral ages from the Oki metamorphic complex, Oki-Dogo, southwest Japan: implications for regional correlations

    Science.gov (United States)

    Dallmeyer, R. D.; Takasu, A.

    1998-08-01

    The Oki metamorphic complex exposed in the Oki-Dogo islands consists predominantly of psammitic and pelitic gneisses with subordinate amphibolite and rare calcareous gneiss. The Oki gneisses were regionally metamorphosed to general amphibolite facies conditions, with local development of granulite facies assemblages. Peak metamorphic conditions of c. 800°C have been suggested. Hornblende concentrates from amphibolites collected within the Oki metamorphic complex record 40Ar/ 39Ar isotope correlation ages of 199-192 Ma. These are interpreted to date the post metamorphic cooling through temperatures required for intracrystalline retention of argon (c. 500°C). Muscovite concentrates record 40Ar/ 39Ar plateau ages of 167-168 Ma. These are interpreted to date post metamorphic cooling through appropriate closure temperature of muscovite (c. 400-375°C). Combined with the previously reported geochronological data, the Oki metamorphic complex appears to have experienced peak metamorphic conditions at c. 250 Ma. Subsequently, it cooled and was exhumed at the earth's surface at c. 90 Ma with cooling rate of c. 5°C/Ma. The Oki metamorphic complex records a similar prograde metamorphic event as the Hida metamorphic complex exposed in central Japan. The cooling and exhumation rates of the Hida metamorphic complex were significantly more rapid compared with the Oki metamorphic complex, and they were exhumed with extensively intruded Jurassic granites (Funatsu granites).

  5. Small Open Chemical Systems Theory: Its Implications to Darwinian Evolution Dynamics, Complex Self-Organization and Beyond

    National Research Council Canada - National Science Library

    QIAN Hong

    2014-01-01

    The study of biological cells in terms of mesoscopic, nonequilibrium, nonlinear, stochastic dynamics of open chemical systems provides a paradigm for other complex, self-organizing systems with ultra...

  6. Proposal: Documenting freshwater snail and trematode parasite diversity in the Wheeler Refuge Complex: baseline inventories and implications for animal health

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This proposal has 3 main objectives: Objective 1: Create a baseline inventory of freshwater snails for the Wheeler Refuge Complex. Objective 2: Identify target areas...

  7. Documenting freshwater snail and trematode parasite diversity in the Wheeler Refuge Complex: baseline inventories and implications for animal health

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Wheeler National Wildlife Refuge (NWR) Complex includes: Wheeler, Sauta Cave, Fern Cave, Mountain Longleaf, Cahaba, and Watercress Darter Refuges that provide...

  8. SHRIMP U-Pb zircon geochronology and its implications on the Xilin Gol Complex, Inner Mongolia, China

    Institute of Scientific and Technical Information of China (English)

    SHI Guanghai; LIU Dunyi; ZHANG Fuqin; JIAN Ping; MIAO Laicheng; SHI Yuruo; TAO Hua

    2003-01-01

    The Xilin Gol Complex, consisting of deformed and metamorphosed rocks, was exposed as a large geological unit within the Central Asian Orogenic Belt, but its forming and subsequent deformed and metamorphic time has been an issue of little consensus. Petrographic analyses and SHRIMP dating on biotite-plagioclase gneiss, one of the major rocks within the Xilin Gol Complex, in southeast Xilinhot City, Inner Mongolia, China, where the Xilin Gol Complex was identified and named, yield its lower limit age of 437 ( 3 Ma (2--) by its magmatic zircon SHRIMP U-Pb dating, and an upper limit age of 316 ( 3Ma (2--), which was constrained by SHRIMP dating of magmatic zircons from adjacent undeformed garnet-bearing granite which intruded the Complex. The Complex was thus determined to be formed and subsequently deformed/metamorphosed from the late Ordovician-early Silurian to the mid-Carboniferous. Consequently, it is not the Precambrian terrane as previously considered by most geologists. More or less, the major rock--biotite- plagioclase gneiss within the Complex is more likely to be Paleozoic fore-arc turbidite formation before metamorphism and intensive deformation, in which the detrital zircons gave sporadic Precambrian ages as old as up to 3.1 Ga. The source of the turbidite formation is multiple, which may be derived either from the North China Craton, or from the South- Mongolia Micro-continent, or probably came from a potential and undiscovered in situ terranes aged 600-800 Ma or even up to ca 3.1 Ga near the Complex.

  9. Model of turnover kinetics in the lamellipodium: implications of slow- and fast- diffusing capping protein and Arp2/3 complex

    Science.gov (United States)

    McMillen, Laura M.; Vavylonis, Dimitrios

    2016-12-01

    Cell protrusion through polymerization of actin filaments at the leading edge of motile cells may be influenced by spatial gradients of diffuse actin and regulators. Here we study the distribution of two of the most important regulators, capping protein and Arp2/3 complex, which regulate actin polymerization in the lamellipodium through capping and nucleation of free barbed ends. We modeled their kinetics using data from prior single molecule microscopy experiments on XTC cells. These experiments have provided evidence for a broad distribution of diffusion coefficients of both capping protein and Arp2/3 complex. The slowly diffusing proteins appear as extended ‘clouds’ while proteins bound to the actin filament network appear as speckles that undergo retrograde flow. Speckle appearance and disappearance events correspond to assembly and dissociation from the actin filament network and speckle lifetimes correspond to the dissociation rate. The slowly diffusing capping protein could represent severed capped actin filament fragments or membrane-bound capping protein. Prior evidence suggests that slowly diffusing Apr2/3 complex associates with the membrane. We use the measured rates and estimates of diffusion coefficients of capping protein and Arp2/3 complex in a Monte Carlo simulation that includes particles in association with a filament network and diffuse in the cytoplasm. We consider two separate pools of diffuse proteins, representing fast and slowly diffusing species. We find a steady state with concentration gradients involving a balance of diffusive flow of fast and slow species with retrograde flow. We show that simulations of FRAP are consistent with prior experiments performed on different cell types. We provide estimates for the ratio of bound to diffuse complexes and calculate conditions where Arp2/3 complex recycling by diffusion may become limiting. We discuss the implications of slowly diffusing populations and suggest experiments to distinguish

  10. Structure of the leukemia oncogene LMO2: implications for the assembly of a hematopoietic transcription factor complex.

    Science.gov (United States)

    El Omari, Kamel; Hoosdally, Sarah J; Tuladhar, Kapil; Karia, Dimple; Vyas, Paresh; Patient, Roger; Porcher, Catherine; Mancini, Erika J

    2011-02-17

    The LIM only protein 2 (LMO2) is a key regulator of hematopoietic stem cell development whose ectopic expression in T cells leads to the onset of acute lymphoblastic leukemia. Through its LIM domains, LMO2 is thought to function as the scaffold for a DNA-binding transcription regulator complex, including the basic helix-loop-helix proteins SCL/TAL1 and E47, the zinc finger protein GATA-1, and LIM-domain interacting protein LDB1. To understand the role of LMO2 in the formation of this complex and ultimately to dissect its function in normal and aberrant hematopoiesis, we solved the crystal structure of LMO2 in complex with the LID domain of LDB1 at 2.4 Å resolution. We observe a largely unstructured LMO2 kept in register by the LID binding both LIM domains. Comparison of independently determined crystal structures of LMO2 reveals large movements around a conserved hinge between the LIM domains. We demonstrate that such conformational flexibility is necessary for binding of LMO2 to its partner protein SCL/TAL1 in vitro and for the function of this complex in vivo. These results, together with molecular docking and analysis of evolutionarily conserved residues, yield the first structural model of the DNA-binding complex containing LMO2, LDB1, SCL/TAL1, and GATA-1.

  11. Implication of Ccr4-Not complex function in mRNA quality control in Saccharomyces cerevisiae

    DEFF Research Database (Denmark)

    Assenholt, Jannie; Mouaikel, John; Saguez, Cyril

    2011-01-01

    Production of messenger ribonucleoprotein particles (mRNPs) is subjected to quality control (QC). In Saccharomyces cerevisiae, the RNA exosome and its cofactors are part of the nuclear QC machinery that removes, or stalls, aberrant molecules, thereby ensuring that only correctly formed mRNPs are ......Production of messenger ribonucleoprotein particles (mRNPs) is subjected to quality control (QC). In Saccharomyces cerevisiae, the RNA exosome and its cofactors are part of the nuclear QC machinery that removes, or stalls, aberrant molecules, thereby ensuring that only correctly formed m......RNPs are exported to the cytoplasm. The Ccr4-Not complex, which constitutes the major S. cerevisiae cytoplasmic deadenylase, has recently been implied in nuclear exosome–related processes. Consistent with a possible nuclear function of the complex, the deletion or mutation of Ccr4-Not factors also elicits...... transcription phenotypes. Here we use genetic depletion of the Mft1p protein of the THO transcription/mRNP packaging complex as a model system to link the Ccr4-Not complex to nuclear mRNP QC. We reveal strong genetic interactions between alleles of the Ccr4-Not complex with both the exosomal RRP6 and MFT1 genes...

  12. A Qualitative Inquiry into the Complex Features of Strained Interactions: Analysis and Implications for Health Care Personnel.

    Science.gov (United States)

    Thunborg, Charlotta; Salzmann-Erikson, Martin

    2017-01-01

    Communication skills are vital for successful relationships between patients and health care professionals. Failure to communicate may lead to a lack of understanding and may result in strained interactions. Our theoretical point of departure was to make use of chaos and complexity theories. To examine the features of strained interactions and to discuss their relevance for health care settings. A netnography study design was applied. Data were purposefully sampled, and video clips (122 minutes from 30 video clips) from public online venues were used. The results are presented in four categories: 1) unpredictability, 2) sensitivity dependence, 3) resistibility, and 4) iteration. They are all features of strained interactions. Strained interactions are a complex phenomenon that exists in health care settings. The findings provide health care professionals guidance to understand the complexity and the features of strained interactions.

  13. Does cryptic microbiota mitigate pine resistance to an invasive beetle-fungus complex? Implications for invasion potential.

    Science.gov (United States)

    Cheng, Chihang; Xu, Letian; Xu, Dandan; Lou, Qiaozhe; Lu, Min; Sun, Jianghua

    2016-09-13

    Microbial symbionts are known to assist exotic pests in their colonization of new host plants. However, there has been little evidence linking symbiotic invasion success to mechanisms for mitigation of native plant resistance. The red turpentine beetle (RTB) was introduced with a fungus, Leptographium procerum, to China from the United States and became a destructively invasive symbiotic complex in natural Pinus tabuliformis forests. Here, we report that three Chinese-resident fungi, newly acquired by RTB in China, induce high levels of a phenolic defensive chemical, naringenin, in pines. This invasive beetle-fungus complex is suppressed by elevated levels of naringenin. However, cryptic microbiotas in RTB galleries strongly degrade naringenin, and pinitol, the main soluble carbohydrate of P. tabuliformis, is retained in L. procerum-infected phloem and facilitate naringenin biodegradation by the microbiotas. These results demonstrate that cryptic microbiota mitigates native host plant phenolic resistance to an invasive symbiotic complex, suggesting a putative mechanism for reduced biotic resistance to symbiotic invasion.

  14. Influence of Anthropogenic Disturbances on Stand Structural Complexity in Andean Temperate Forests: Implications for Managing Key Habitat for Biodiversity

    Science.gov (United States)

    2017-01-01

    Forest attributes and their abundances define the stand structural complexity available as habitat for faunal biodiversity; however, intensive anthropogenic disturbances have the potential to degrade and simplify forest stands. In this paper we develop an index of stand structural complexity and show how anthropogenic disturbances, namely fire, logging, livestock, and their combined presence, affect stand structural complexity in a southern Global Biodiversity Hotspot. From 2011 to 2013, we measured forest structural attributes as well as the presence of anthropogenic disturbances in 505 plots in the Andean zone of the La Araucanía Region, Chile. In each plot, understory density, coarse woody debris, number of snags, tree diameter at breast height, and litter depth were measured, along with signs of the presence of anthropogenic disturbances. Ninety-five percent of the plots showed signs of anthropogenic disturbance (N = 475), with the combined presence of fire, logging, and livestock being the most common disturbance (N = 222; 44% of plots). The lowest values for the index were measured in plots combining fire, logging, and livestock. Undisturbed plots and plots with the presence of relatively old fires (> 70 years) showed the highest values for the index of stand structural complexity. Our results suggest that secondary forests < 70-year post-fire event, with the presence of habitat legacies (e.g. snags and CWD), can reach a structural complexity as high as undisturbed plots. Temperate forests should be managed to retain structural attributes, including understory density (7.2 ± 2.5 # contacts), volume of CWD (22.4 ± 25.8 m3/ha), snag density (94.4 ± 71.0 stems/ha), stand basal area (61.2 ± 31.4 m2/ha), and litter depth (7.5 ± 2.7 cm). Achieving these values will increase forest structural complexity, likely benefiting a range of faunal species in South American temperate forests. PMID:28068349

  15. Structure of p15PAF-PCNA complex and implications for clamp sliding during DNA replication and repair

    DEFF Research Database (Denmark)

    De Biasio, Alfredo; de Opakua, Alain Ibáñez; Mortuza, Gulnahar B

    2015-01-01

    The intrinsically disordered protein p15(PAF) regulates DNA replication and repair by binding to the proliferating cell nuclear antigen (PCNA) sliding clamp. We present the structure of the human p15(PAF)-PCNA complex. Crystallography and NMR show the central PCNA-interacting protein motif (PIP...... free and PCNA-bound p15(PAF) binds DNA mainly through its histone-like N-terminal tail, while PCNA does not, and a model of the ternary complex with DNA inside the PCNA ring is consistent with electron micrographs. We propose that p15(PAF) acts as a flexible drag that regulates PCNA sliding along...

  16. Reactivity and selectivity differences between catecholate and catechothiolate Ru complexes. Implications regarding design of stereoselective olefin metathesis catalysts.

    Science.gov (United States)

    Khan, R Kashif M; Torker, Sebastian; Hoveyda, Amir H

    2014-10-15

    The origins of the unexpected finding that Ru catechothiolate complexes, in contrast to catecholate derivatives, promote exceptional Z-selective olefin metathesis reactions are elucidated. We show that species containing a catechothiolate ligand, unlike catecholates, preserve their structural integrity under commonly used reaction conditions. DFT calculations indicate that, whereas alkene coordination is the stereochemistry-determining step with catecholate complexes, it is through the metallacyclobutane formation that the identity of the major isomer is determined with catechothiolate systems. The present findings suggest that previous models for Z selectivity, largely based on steric differences, should be altered to incorporate electronic factors as well.

  17. Searching for order within chaos: complexity theory’s implications to intelligence support during joint operational planning.

    Science.gov (United States)

    2017-06-09

    subsumes Chaos Theory, Complexity Theory techniques have been evaluated to identify potential utilization during joint intelligence analysis ...Although joint intelligence analysis describes analyzing systems from a holistic systems perspective, most analytic techniques are reductionist in nature... Intelligence Analysis , Joint Operational Planning, Cellular Automata, Agent-Based Modeling 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF ABSTRACT 18

  18. X-ray Structure of Cyclodextrin Glycosyltransferase Complexed with Acarbose. Implications for the Catalytic Mechanism of Glycosidases

    NARCIS (Netherlands)

    STROKOPYTOV, B; PENNINGA, D; ROZEBOOM, HJ; KALK, KH; DIJKHUIZEN, L; DIJKSTRA, BW

    1995-01-01

    Crystals of cyclodextrin glycosyltransferase (CGTase) from Bacillus circulans strain 251 were soaked in buffer solutions containing the pseudotetrasaccharide acarbose, a strong amylase- and CGTase inhibitor. The X-ray structure of the complex was elucidated at 2.5-Angstrom resolution with a final

  19. Clay-Nucleic Acid Complexes: Characteristics and Implications for the Preservation of Genetic Material in Primeval Habitats

    Science.gov (United States)

    Franchi, Marco; Bramanti, Emilia; Morassi Bonzi, Laura; Luigi Orioli, Pier; Vettori, Cristina; Gallori, Enzo

    1999-05-01

    The equilibrium adsorption of three nucleic acids: chromosomal DNA, supercoiled plasmid DNA, and 25S rRNA, on the clay minerals, montmorillonite (M) and kaolinite (K), were studied. Adsorption of the nucleic acid on the clays was rapid and maximal after 90 min of contact time. Chromosomal DNA was adsorbed to a greater extent than plasmid DNA and RNA, and the adsorption was also greater on M than on K. Adsorption isotherms were of the L type, and a plateau was reached with all the complexes, with the exception of chromosomal DNA adsorbed on M. To determine where nucleic acids are adsorbed on clay minerals and the nature of the interaction, complexes were studied by X-ray diffraction (X-RD), electron microscopy, and Fourier transform infrared (FT-IR) spectroscopy. X-RD showed that nucleic acids did not penetrate the clay, indicating that the adsorption occurred primarily on the external surfaces of clay particles, as also suggested by electron microscopy observations. FT-IR spectra of clay-tightly bound nucleic acid complexes showed absorption bands that indicate a variation of the nucleic acids status as a consequence of their adsorption on clay. Data obtained suggested that the formation of clay-nucleic acid complex could have an important role in the preservation of genetic material in primeval habitats.

  20. Early Jurassic tectonism occurred within the Basu metamorphic complex, eastern central Tibet: Implications for an archipelago-accretion orogenic model

    Science.gov (United States)

    Li, Hua-Qi; Xu, Zhi-Qin; Webb, A. Alexander G.; Li, Tian-Fu; Ma, Shi-Wei; Huang, Xue-Meng

    2017-04-01

    The Basu metamorphic complex, surrounded by ophiolitic melanges and intruded by a large volume of undeformed granitoid rocks along the eastern segment of the Bangong-Nujiang suture, holds one of the keys to understanding the pre-Cenozoic tectonic evolution of central Tibet. Zircon U-Pb dating of rocks from the Basu metamorphic complex reveals that meta-igneous rocks yield Early Paleozoic crystallization ages of 500-492 Ma and an Early Jurassic metamorphic age of 173 Ma, and that undeformed granitoid rocks yield crystallization ages of approximately 186-174 Ma. Whole rock geochemical and zircon Lu-Hf isotopic data indicate that the undeformed granitoid rocks originated mainly from partial melting of ancient crustal sources, which may reflect a collisional orogenic setting. 40Ar/39Ar dating of biotite from a sillimanite-garnet-biotite paragneiss shows cooling to 300 ± 50 °C at 165 Ma. These data indicate significant Early Jurassic tectonism, during which most of the Basu metamorphic complex was formed. Furthermore, the age data resemble those of the Amdo metamorphic complex located approximately 500 km to the west along the Bangong-Nujiang suture. Together, these complexes may represent a ;destroyed or unrecognized; block, i.e., the Amdo-Tongka block, which may be the eastern extension of the South Qiangtang terrane. Based on the tectonic outlines of the multiple ophiolitic zones and magmatic belts, we suggest a new archipelago-accretion model that attributes the Early Jurassic tectonism to an arc-continent/micro-continent collision. This model further enables the reconstruction of the eastern Tethyan Ocean and the orogenic processes of central Tibet during the Mesozoic.

  1. Modelling hemoglobin and hemoglobin:haptoglobin complex clearance in a non-rodent species– pharmacokinetic and therapeutic implications

    Directory of Open Access Journals (Sweden)

    Felicitas S Boretti

    2014-10-01

    Full Text Available Preclinical studies suggest that haptoglobin (Hp supplementation could be an effective therapeutic modality during acute or chronic hemolytic diseases. Hp prevents Hb extravasation and neutralizes Hb’s oxidative and NO scavenging activity in the vasculature. Small animal models such as mouse, rat and guinea pig appear to be valuable to provide proof-of-concept for Hb neutralization by Hp in diverse pre-clinical conditions. However, these species differ significantly from human in the clearance of Hb:Hp complexes, which leads to long persistence of circulating Hb:Hp complexes after administration of human plasma derived Hp. Alternative animal models must therefore be explored to guide pre-clinical development of these potential therapeutics. In contrast to rodents, dogs have high Hp plasma concentrations comparable to human. In this study we show that like human macrophages, dog peripheral blood monocyte derived macrophages express a glucocorticoid inducible endocytic clearance pathways with a high specificity for the Hb:Hp complex. Evaluating the Beagle dog as a non-rodent model species we provide the first pharmacokinetic parameter estimates of free Hb and Hb:Hp phenotype complexes. The data reflect a drastically reduced volume of distribution (Vc of the complex compared to free Hb, increased exposures (Cmax and AUC and significantly reduced total body clearance (CL with a terminal half-life (t1/2 of approximately 12 hours. Distribution and clearance was identical for dog and human Hb (± glucocorticoid stimulation and for dimeric and multimeric Hp preparations bound to Hb. Collectively, our study supports the dog as a non-rodent animal model to study pharmacological and pharmacokinetic aspects of Hb clearance systems and apply the model to studying Hp therapeutics.

  2. Design of a fluorescent DNA IMPLICATION logic gate and detection of Ag+ and cysteine with triphenylmethane dye/G-quadruplex complexes.

    Science.gov (United States)

    Guo, Jun-Hong; Kong, De-Ming; Shen, Han-Xi

    2010-10-15

    This paper describes the construction of a DNA IMPLICATION logic gate based on triphenylmethane (TPM) dye/G-quadruplex complexes, using Ag+ and cysteine (Cys) as the two inputs, and fluorescence intensity of the TPM dye as the output signal. Free triphenylmethane (TPM) dyes emit inherently low fluorescence signal, the formation of TPM dye/G-quadruplex complexes yielded greatly enhanced fluorescence signals from the dye, and the output signal of the gate was 1. The addition of Cys had no effect on the fluorescence signal, again yielding an output of 1. However, the addition of Ag+ instead of Cys greatly disrupted the G-quadruplex structure, causing a decrease in the fluorescence of the dye, and yielding an output signal of 0. The addition of Cys into the Ag+-quenched fluorescence system led to the release of Ag+ from G-quadruplex-forming DNAs, resulting in the reformation of G-quadruplex structures and the recovery of TMP dye fluorescence, the output signal of 1 was obtained again. Compared with previously published DNA logic gates, the gate operation described here was rapid and reversible, with a reliable, nondestructive readout and excellent digital behavior. In addition, the modulation of TPM dye/G-quadruplex complex fluorescence by Ag+ and Cys could be used to develop a simple, fast, label-free and highly specific homogenous sensing methods for Ag+ and Cys. Copyright © 2010 Elsevier B.V. All rights reserved.

  3. Tectonic control of complex slope failures in the Ameka River Valley (Lower Gibe Area, central Ethiopia): Implications for landslide formation

    Science.gov (United States)

    Kycl, Petr; Rapprich, Vladislav; Verner, Kryštof; Novotný, Jan; Hroch, Tomáš; Mišurec, Jan; Eshetu, Habtamu; Tadesse Haile, Ezra; Alemayehu, Leta; Goslar, Tomasz

    2017-07-01

    Even though major faults represent important landslide controlling factors, the role the tectonic setting in actively spreading rifts plays in the development of large complex landslides is seldom discussed. The Ameka complex landslide area is located on the eastern scarp of the Gibe Gorge, approximately 45 km to the west of the Main Ethiopian Rift and 175 km to the southwest of Addis Ababa. Investigation of the complex landslide failures required a combination of satellite and airborne data-based geomorphology, geological field survey complemented with structural analysis, radiocarbon geochronology and vertical electric sounding. The obtained observations confirmed the multiphase evolution of the landslide area. We have documented that, apart from climatic and lithological conditions, the main triggering factor of the Ameka complex landslide is the tectonic development of this area. The E-W extension along the NNE-SSW trending Main Ethiopian Rift is associated with the formation of numerous parallel normal faults, such as the Gibe Gorge fault and the almost perpendicular scissor faults. The geometry of the slid blocks of coherent lithology have inherited the original tectonic framework, which suggests the crucial role tectonics play in the fragmentation of the compact rock-masses, and the origin and development of the Ameka complex landslide area. Similarly, the main scarps were also parallel to the principal tectonic features. The local tectonic framework is dominated by faults of the same orientation as the regional structures of the Main Ethiopian Rift. Such parallel tectonic frameworks display clear links between the extension of the Main Ethiopian Rift and the tectonic development of the landslide area. The Ameka complex landslide developed in several episodes over thousands of years. According to the radiocarbon data, the last of the larger displaced blocks (representing only 2% of the total area) most likely slid down in the seventh century AD. The main

  4. Complexity Theories of Cities Have Come of Age An Overview with Implications to Urban Planning and Design

    CERN Document Server

    Meyer, Han; Stolk, Egbert; Tan, Ekim

    2012-01-01

    Today, our cities are an embodiment of the complex, historical evolution of knowledge, desires and technology. Our planned and designed activities co-evolve with our aspirations, mediated by the existing technologies and social structures.  The city represents the accretion and accumulation of successive layers of collective activity, structuring and being structured by other, increasingly distant cities, reaching now right around the globe. This historical and structural development cannot therefore be understood or captured by any set of fixed quantitative relations. Structural changes imply that the patterns of growth, and their underlying reasons change over time, and therefore that any attempt to control the morphology of cities and their patterns of flow by means of planning and design, must be dynamical, based on the mechanisms that drive the changes occurring at a given moment. This carefully edited post-proceedings volume gathers a snapshot view by leading researchers in field, of current complexity...

  5. Complex genetic structure of the rabies virus in Bangkok and its surrounding provinces, Thailand: implications for canine rabies control.

    Science.gov (United States)

    Lumlertdacha, Boonlert; Wacharapluesadee, Supaporn; Denduangboripant, Jessada; Ruankaew, Nipada; Hoonsuwan, Wirongrong; Puanghat, Apirom; Sakarasaeranee, Plyyonk; Briggs, Deborrah; Hemachudha, Thiravat

    2006-03-01

    Dog vaccination and population management have been suggested as priorities in attempts at disease control in canine rabies-endemic countries. Budget limitations and the complexity of social, cultural and religious variables have complicated progress in the developing world. In Bangkok, Thailand, an intensive canine vaccination and sterilization programme has been in place since November 2002. Our objective was to determine if the rabies virus could be mapped according to its genetic variations and geographical location on the small localized scale of Bangkok and its surrounding provinces. Phylogenetic characterization of 69 samples from Bangkok and five neighbouring and two remote provinces, by limited sequence analysis of the rabies virus nucleoprotein gene, distinguished six different clades. Rabies viruses of four clades were intermixed in Bangkok and in the surrounding highly populated regions whereas the other two clades were confined to rural and less populated provinces. Such a complex pattern of gene flow, particularly in Bangkok, may affect the outcome of canine control programmes.

  6. A Hospital Is Not Just a Factory, but a Complex Adaptive System-Implications for Perioperative Care.

    Science.gov (United States)

    Mahajan, Aman; Islam, Salim D; Schwartz, Michael J; Cannesson, Maxime

    2017-07-01

    Many methods used to improve hospital and perioperative services productivity and quality of care have assumed that the hospital is essentially a factory, and therefore, that industrial engineering and manufacturing-derived redesign approaches such as Six Sigma and Lean can be applied to hospitals and perioperative services just as they have been applied in factories. However, a hospital is not merely a factory but also a complex adaptive system (CAS). The hospital CAS has many subsystems, with perioperative care being an important one for which concepts of factory redesign are frequently advocated. In this article, we argue that applying only factory approaches such as lean methodologies or process standardization to complex systems such as perioperative care could account for difficulties and/or failures in improving performance in care delivery. Within perioperative services, only noncomplex/low-variance surgical episodes are amenable to manufacturing-based redesign. On the other hand, complex surgery/high-variance cases and preoperative segmentation (the process of distinguishing between normal and complex cases) can be viewed as CAS-like. These systems tend to self-organize, often resist or react unpredictably to attempts at control, and therefore require application of CAS principles to modify system behavior. We describe 2 examples of perioperative redesign to illustrate the concepts outlined above. These examples present complementary and contrasting cases from 2 leading delivery systems. The Mayo Clinic example illustrates the application of manufacturing-based redesign principles to a factory-like (high-volume, low-risk, and mature practice) clinical program, while the Kaiser Permanente example illustrates the application of both manufacturing-based and self-organization-based approaches to programs and processes that are not factory-like but CAS-like. In this article, we describe how factory-like processes and CAS can coexist within a hospital and how

  7. Mechanistic implications of the active species involved in the oxidation of hydrocarbons by Iron complexes of pyrazine-2-carboxylic acid

    NARCIS (Netherlands)

    Tanase, Stefania; Marques-Gallego, Patricia; Browne, Wesley R.; Hage, Ronald; Bouwman, Elisabeth; Feringa, Ben L.; Reedijk, Jan

    2008-01-01

    The reactivity towards H2O2 of the complexes [Fe(pca)(2)(py)(2)]center dot py (1) and Na-2{[Fe(pca(3))](2)O}center dot 2H(2)O center dot CH3CN (2) (where pca(-) is pyrazine-2-carboxylate) and their catalytic activity in the oxidation of hydrocarbons is reported. Addition of H2O2 to 1 results in the

  8. Regulation of peripheral blood flow in Complex Regional Pain Syndrome: clinical implication for symptomatic relief and pain management

    OpenAIRE

    2009-01-01

    Abstract Background During the chronic stage of Complex Regional Pain Syndrome (CRPS), impaired microcirculation is related to increased vasoconstriction, tissue hypoxia, and metabolic tissue acidosis in the affected limb. Several mechanisms may be responsible for the ischemia and pain in chronic cold CPRS. Discussion The diminished blood flow may be caused by either sympathetic dysfunction, hypersensitivity to circulating catecholamines, or endothelial dysfunction. The pain may be of neuropa...

  9. Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications for coral-guild ecology

    Science.gov (United States)

    Rouzé, H.; Leray, M.; Magalon, H.; Penin, L.; Gélin, P.; Knowlton, N.; Fauvelot, C.

    2017-01-01

    Several obligate associate crabs and shrimps species may co-occur and interact within a single coral host, leading to patterns of associations that can provide essential ecological services. However, knowledge of the dynamics of interactions in this system is limited, partly because identifying species involved in the network remains challenging. In this study, we assessed the diversity of the decapods involved in exosymbiotic assemblages for juvenile and adult Pocillopora damicornis types α and β on reefs of New Caledonia and Reunion Island. This approach revealed complex patterns of association at regional and local scales with a prevalence of assemblages involving crab-shrimp partnerships. Furthermore, the distinction of two lineages in the snapping shrimp Alpheus lottini complex, rarely recognized in ecological studies, reveals a key role for cryptic diversity in structuring communities of mutualists. The existence of partnerships between species that occurred more commonly than expected by chance suggests an increased advantage for the host or a better adaptation of associated species to local environmental conditions. The consideration of cryptic diversity helps to accurately describe the complexity of interaction webs for diverse systems such as coral reefs, as well as the functional roles of dominant associated species for the persistence of coral populations. PMID:28358026

  10. Genetic architecture of the F7 gene in a Spanish population: implication for mapping complex diseases and for functional assays.

    Science.gov (United States)

    Sabater-Lleal, M; Almasy, L; Martínez-Marchán, E; Martínez-Sánchez, E; Souto, R; Blangero, J; Souto, Jc; Fontcuberta, J; Soria, J M

    2006-05-01

    Delineating the genetic variability of loci coding for complex diseases helps to understand the individual variation in disease susceptibility and drug response. We present the allelic architecture of the F7 gene. This gene is the major determinant of FVII plasma levels, and these plasma levels constitute an important intermediate risk factor for cardiovascular disease. As part of the Genetic Analysis of Idiopathic Thrombophila Project, we completely re-sequenced the F7 locus (promoter, exons, introns, and 3'-untranslated region) in 40 unrelated individuals. We found 49 polymorphisms with only two amino acid changes suggesting that regulatory non-coding and intronic variants are responsible for the FVII variability. These results are important for mapping susceptibility alleles of complex diseases, because differences in pair-wise linkage disequilibrium patterns between DNA variants and haplotype frequency distributions may help to detect disease-associated alleles. In addition, we present the results of an in silico search that established genomic comparisons among different species. In conclusion, our study of the F7 DNA sequence variations is an example of a strategy for analyzing the genetic architecture of a quantitative trait locus. Furthermore, it provides a model for future analyses of genetic factors that contribute to the susceptibility of complex diseases in humans.

  11. Structure of ERA in Complex with the 3 End of 16s rRNBA Implications for Ribosome Biogenesis

    Energy Technology Data Exchange (ETDEWEB)

    Tu, C.; Zhou, X; Tropea, J; Austin, B; Waugh, D; Court, D; Ji, X

    2009-01-01

    ERA, composed of an N-terminal GTPase domain followed by an RNA-binding KH domain, is essential for bacterial cell viability. It binds to 16S rRNA and the 30S ribosomal subunit. However, its RNA-binding site, the functional relationship between the two domains, and its role in ribosome biogenesis remain unclear. We have determined two crystal structures of ERA, a binary complex with GDP and a ternary complex with a GTP-analog and the 1531AUCACCUCCUUA1542 sequence at the 3? end of 16S rRNA. In the ternary complex, the first nine of the 12 nucleotides are recognized by the protein. We show that GTP binding is a prerequisite for RNA recognition by ERA and that RNA recognition stimulates its GTP-hydrolyzing activity. Based on these and other data, we propose a functional cycle of ERA, suggesting that the protein serves as a chaperone for processing and maturation of 16S rRNA and a checkpoint for assembly of the 30S ribosomal subunit. The AUCA sequence is highly conserved among bacteria, archaea, and eukaryotes, whereas the CCUCC, known as the anti-Shine-Dalgarno sequence, is conserved in noneukaryotes only. Therefore, these data suggest a common mechanism for a highly conserved ERA function in all three kingdoms of life by recognizing the AUCA, with a 'twist' for noneukaryotic ERA proteins by also recognizing the CCUCC.

  12. Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis

    Energy Technology Data Exchange (ETDEWEB)

    Tu, Chao; Zhou, Xiaomei; Tropea, Joseph E.; Austin, Brian P.; Waugh, David S.; Court, Donald L.; Ji, Xinhua; (NCI)

    2009-10-09

    ERA, composed of an N-terminal GTPase domain followed by an RNA-binding KH domain, is essential for bacterial cell viability. It binds to 16S rRNA and the 30S ribosomal subunit. However, its RNA-binding site, the functional relationship between the two domains, and its role in ribosome biogenesis remain unclear. We have determined two crystal structures of ERA, a binary complex with GDP and a ternary complex with a GTP-analog and the {sub 1531}AUCACCUCCUUA{sub 1542} sequence at the 3' end of 16S rRNA. In the ternary complex, the first nine of the 12 nucleotides are recognized by the protein. We show that GTP binding is a prerequisite for RNA recognition by ERA and that RNA recognition stimulates its GTP-hydrolyzing activity. Based on these and other data, we propose a functional cycle of ERA, suggesting that the protein serves as a chaperone for processing and maturation of 16S rRNA and a checkpoint for assembly of the 30S ribosomal subunit. The AUCA sequence is highly conserved among bacteria, archaea, and eukaryotes, whereas the CCUCC, known as the anti-Shine-Dalgarno sequence, is conserved in noneukaryotes only. Therefore, these data suggest a common mechanism for a highly conserved ERA function in all three kingdoms of life by recognizing the AUCA, with a 'twist' for noneukaryotic ERA proteins by also recognizing the CCUCC.

  13. RuvBL1 and RuvBL2 and Their Complex Proteins Implicated in Many Cellular Pathways

    Science.gov (United States)

    Gorynia, Sabine; Bandeiras, Tiago M.; Matias, Pedro M.; Pinho, Filipa G.; McVey, Colin E.; Donner, Peter; Carrondo, Maria Arménia

    RuvBL1 and its homolog RuvBL2 belong to the AAA+ family of ATPases and play important roles in chromatin remodeling, in transcriptional regulation, in DNA repair and in the c-Myc and Wnt signaling pathways. Proteins involved in these pathways are often mutated in human cancers. Both RuvBL proteins form a complex and act alone or together in diverse cellular processes. The three-dimensional structures of human RuvBL1 refined using diffraction data to 2.2 Å resolution and of the human RuvBL1/RuvBL2 complex with a truncated domain II at 3 Å resolution are presented. The dodecameric RuvBL1/RuvBL2 complex structure differs from previously described models. It consists of two heterohexameric rings with alternating RuvBL1 and RuvBL2 monomers that interact with each other via domain II. ATPase and helicase activities of RuvBL1 and RuvBL2 were also tested. Interestingly, truncation of domain II resulted not only in a substantial increase of ATP consumption by the RuvBL proteins, but also in stimulation of helicase activity, which was not observed with the full-length proteins.

  14. Fast cleavage of a diselenide induced by a platinum(II)-methionine complex and its biological implications.

    Science.gov (United States)

    Liu, Qin; Wang, Xiaoyong; Yang, Xiaoliang; Liang, Xiao; Guo, Zijian

    2010-11-01

    Platinum-based anticancer drugs such as cisplatin induce increased oxidative stress and oxidative damage of DNA and other cellular components, while selenium plays an important role in the antioxidant defense system. In this study, the interaction between a platinum(II) methionine (Met) complex [Pt(Met)Cl(2)] and a diselenide compound selenocystine [(Sec)(2)] was studied by electrospray ionization mass spectrometry, high performance liquid chromatography mass spectrometry, and (1)H NMR spectroscopy. The results demonstrate that the diselenide bond in (Sec)(2) can readily and quickly be cleaved by the platinum complex. Formation of the selenocysteine (Sec) bridged dinuclear complex [Pt(2)(Met-S,N)(2)(μ-Sec-Se,Cl)](3+) and Sec chelated species [Pt(Met-S,N)(Sec-Se,N)](2+) was identified at neutral and acidic media, which seems to result from the intermediate [Pt(Met-S,N)(Sec-Se)Cl](+). An accelerated formation of S-Se and S-S bonds was also observed when (Sec)(2) reacted with excessive glutathione in the presence of [Pt(Met)Cl(2)]. These results imply that the mechanism of activity and toxicity of platinum drugs may be related to their fast reaction with seleno-containing biomolecules, and the chemoprotective property of selenium agents against cisplatin-induced toxicity could also be connected with such reactions.

  15. SHRIMP Zircon U-Pb Dating of the Tongshi Magmatic Complex in Western Shandong and Its Geological Implications

    Institute of Scientific and Technical Information of China (English)

    HU Huabin; MAO Jingwen; LIU Dunyi; NIU Shuyin; WANG Yanbin; LI Yongfeng; SHI Ruruo

    2005-01-01

    The SHRIMP U-Pb zircon dating result of the Tongshi magmatic complex in western Shandong is presented in this paper.The Tongshi magmatic complex comprises fine-grained porphyritic diorite and syenitic porphyry.Eighteen analyses for fine-grained porphyritic diorite gave two concordia ages,in which ten analyses constitute the young age group,giving 206Pb/238U ages ranging from 167.9 Ma to 183 Ma with a weighted mean age of 175.7±3.8 Ma,and the other eight yielded 207Pb/206Pb ages of 2502 Ma to 2554 Ma with a weighted mean 2518±11 Ma.Two analyses for syenitic porphyry gave ages of 2485 Ma and 2512 Ma,respectively.The age of 175.7±3.8 Ma indicates that the crystallization of the Tongshi magmatic complex occurred in the Middle Jurassic,whereas that of 2518±11 Ma is interpreted as the age of inherited magmatic zircons in the Neoarchean Wutai period.

  16. A Novel Dimeric Inhibitor Targeting Beta2GPI in Beta2GPI/Antibody Complexes Implicated in Antiphospholipid Syndrome

    Energy Technology Data Exchange (ETDEWEB)

    A Kolyada; C Lee; A De Biasio; N Beglova

    2011-12-31

    {beta}2GPI is a major antigen for autoantibodies associated with antiphospholipid syndrome (APS), an autoimmune disease characterized by thrombosis and recurrent pregnancy loss. Only the dimeric form of {beta}2GPI generated by anti-{beta}2GPI antibodies is pathologically important, in contrast to monomeric {beta}2GPI which is abundant in plasma. We created a dimeric inhibitor, A1-A1, to selectively target {beta}2GPI in {beta}2GPI/antibody complexes. To make this inhibitor, we isolated the first ligand-binding module from ApoER2 (A1) and connected two A1 modules with a flexible linker. A1-A1 interferes with two pathologically important interactions in APS, the binding of {beta}2GPI/antibody complexes with anionic phospholipids and ApoER2. We compared the efficiency of A1-A1 to monomeric A1 for inhibition of the binding of {beta}2GPI/antibody complexes to anionic phospholipids. We tested the inhibition of {beta}2GPI present in human serum, {beta}2GPI purified from human plasma and the individual domain V of {beta}2GPI. We demonstrated that when {beta}2GPI/antibody complexes are formed, A1-A1 is much more effective than A1 in inhibition of the binding of {beta}2GPI to cardiolipin, regardless of the source of {beta}2GPI. Similarly, A1-A1 strongly inhibits the binding of dimerized domain V of {beta}2GPI to cardiolipin compared to the monomeric A1 inhibitor. In the absence of anti-{beta}2GPI antibodies, both A1-A1 and A1 only weakly inhibit the binding of pathologically inactive monomeric {beta}2GPI to cardiolipin. Our results suggest that the approach of using a dimeric inhibitor to block {beta}2GPI in the pathological multivalent {beta}2GPI/antibody complexes holds significant promise. The novel inhibitor A1-A1 may be a starting point in the development of an effective therapeutic for antiphospholipid syndrome.

  17. A novel dimeric inhibitor targeting Beta2GPI in Beta2GPI/antibody complexes implicated in antiphospholipid syndrome.

    Directory of Open Access Journals (Sweden)

    Alexey Kolyada

    Full Text Available BACKGROUND: β2GPI is a major antigen for autoantibodies associated with antiphospholipid syndrome (APS, an autoimmune disease characterized by thrombosis and recurrent pregnancy loss. Only the dimeric form of β2GPI generated by anti-β2GPI antibodies is pathologically important, in contrast to monomeric β2GPI which is abundant in plasma. PRINCIPAL FINDINGS: We created a dimeric inhibitor, A1-A1, to selectively target β2GPI in β2GPI/antibody complexes. To make this inhibitor, we isolated the first ligand-binding module from ApoER2 (A1 and connected two A1 modules with a flexible linker. A1-A1 interferes with two pathologically important interactions in APS, the binding of β2GPI/antibody complexes with anionic phospholipids and ApoER2. We compared the efficiency of A1-A1 to monomeric A1 for inhibition of the binding of β2GPI/antibody complexes to anionic phospholipids. We tested the inhibition of β2GPI present in human serum, β2GPI purified from human plasma and the individual domain V of β2GPI. We demonstrated that when β2GPI/antibody complexes are formed, A1-A1 is much more effective than A1 in inhibition of the binding of β2GPI to cardiolipin, regardless of the source of β2GPI. Similarly, A1-A1 strongly inhibits the binding of dimerized domain V of β2GPI to cardiolipin compared to the monomeric A1 inhibitor. In the absence of anti-β2GPI antibodies, both A1-A1 and A1 only weakly inhibit the binding of pathologically inactive monomeric β2GPI to cardiolipin. CONCLUSIONS: Our results suggest that the approach of using a dimeric inhibitor to block β2GPI in the pathological multivalent β2GPI/antibody complexes holds significant promise. The novel inhibitor A1-A1 may be a starting point in the development of an effective therapeutic for antiphospholipid syndrome.

  18. Sinkholes and caves related to evaporite dissolution in a stratigraphically and structurally complex setting, Fluvia Valley, eastern Spanish Pyrenees. Geological, geomorphological and environmental implications

    Science.gov (United States)

    Gutiérrez, Francisco; Fabregat, Ivan; Roqué, Carles; Carbonel, Domingo; Guerrero, Jesús; García-Hermoso, Fernando; Zarroca, Mario; Linares, Rogelio

    2016-08-01

    Evaporite karst and sinkhole development is analysed in a geologically complex area of NE Spain, including four evaporite units with different characteristics and affected by compressional and extensional tectonic structures. The exposed paleosinkholes, including remarkable Early Pleistocene paleontological sites, provide valuable information on the subsidence mechanisms and reveal the significant role played by interstratal karstification in the area. These gravitational deformation structures, including hectometre-scale bending folds and oversteepened normal faults, strongly suggest that the present-day compressional regime inferred in previous studies may be largely based on the analysis of non-tectonic structures. Two gypsum caves ca. 1 km long show that passages with restricted cross-sectional area may produce large breccia pipes and sinkholes thanks to the removal of breakdown boulders by high-competence episodic floods. Moreover, the upward progression of cave ceilings by paragenesis and condensation dissolution contributes to increase the probability of sinkhole occurrence. An inventory of 135 sinkholes together with their geological and geomorphological context has been developed. This data base has been used to infer several properties of the sinkholes with practical implications: a magnitude and frequency scaling relationship, spatial distribution patterns, dominant controlling factors and risk implications.

  19. Synthesis, structure determination, and spectroscopic/computational characterization of a series of Fe(II)-thiolate model complexes: implications for Fe-S bonding in superoxide reductases.

    Science.gov (United States)

    Fiedler, Adam T; Halfen, Heather L; Halfen, Jason A; Brunold, Thomas C

    2005-02-16

    A combined synthetic/spectroscopic/computational approach has been employed to prepare and characterize a series of Fe(II)-thiolate complexes that model the square-pyramidal [Fe(II)(N(His))(4)(S(Cys))] structure of the reduced active site of superoxide reductases (SORs), a class of enzymes that detoxify superoxide in air-sensitive organisms. The high-spin (S = 2) Fe(II) complexes [(Me(4)cyclam)Fe(SC(6)H(4)-p-OMe)]OTf (2) and [FeL]PF(6) (3) (where Me(4)cyclam = 1,4,8,11-tetramethylcyclam and L is the pentadentate monoanion of 1-thioethyl-4,8,11-trimethylcyclam) were synthesized and subjected to structural, magnetic, and electrochemical characterization. X-ray crystallographic studies confirm that 2 and 3 possess an N(4)S donor set similar to that found for the SOR active site and reveal molecular geometries intermediate between square pyramidal and trigonal bipyramidal for both complexes. Electronic absorption, magnetic circular dichroism (MCD), and variable-temperature variable-field MCD (VTVH-MCD) spectroscopies were utilized, in conjunction with density functional theory (DFT) and semiemperical INDO/S-CI calculations, to probe the ground and excited states of complexes 2 and 3, as well as the previously reported Fe(II) SOR model [(L(8)py(2))Fe(SC(6)H(4)-p-Me)]BF(4) (1) (where L(8)py(2) is a tetradentate pyridyl-appended diazacyclooctane macrocycle). These studies allow for a detailed interpretation of the S-->Fe(II) charge transfer transitions observed in the absorption and MCD spectra of complexes 1-3 and provide significant insights into the nature of Fe(II)-S bonding in complexes with axial thiolate ligation. Of the three models investigated, complex 3 exhibits an absorption spectrum that is particularly similar to the one reported for the reduced SOR enzyme (SOR(red)), suggesting that this model accurately mimics key elements of the electronic structure of the enzyme active site; namely, highly covalent Fe-S pi- and sigma-interactions. These spectral

  20. Major Element Geochemistry of Peridotites from Santa Elena Ophiolite Complex, NW Costa Rica and Their Tectonic Implications

    Science.gov (United States)

    Wright, S.; Snow, J. E.; Gazel, E.; Sisson, V.

    2010-12-01

    The Santa Elena Ophiolite Complex (SEOC) is located on the west coast of Northern Costa Rica, near the Nicaraguan border. It consists primarily of preserved oceanic crustal rocks and underlying upper mantle thrust onto an accretionary complex. The petrogenesis and tectonic origin of this complex have widely been interpreted to be either a preserved mantle portion of the Caribbean Large Igneous Province (CLIP) as it drifted between North and South America from the Galapagos hotpot into the present day Caribbean Ocean around 80 Ma or as the mantle section to the nearby Nicoya complex. Previous structural work suggests that SEOC is a supra-subduction complex, not related to the CLIP or Nicoya. Our preliminary results agree. Mantle peridotites collected from the Santa Elena Ophiolite Complex consist primarily of spinel lherzolite (61 %) with minor amounts of harzburgite and dunite (22 % and 16 % respectively). Spinel Cr# [molar Cr / (Cr+Al)*100] is widely accepted to constrain mantle partial melting and lithospheric melt stagnation. Cr# of spinels within Santa Elena lherzolites fall between 12 and 35, suggesting an extent of 3 % to 13 % partial melting. Cr# of harzburgites range from 35 to 39, suggesting 13 % to 14 % partial melting. This range of partial melting suggests only modest depletion of this exposed portion of the ancient uppermost mantle. TiO2 concentrations of the lherzolite and harzburgite range from 0.004% to 0.128%, with the exception of one sample, SE10 - 17 (0.258%), and fall within the normal melting trend for mantle peridotites. The presence of dunite indicates that melt flow and associated melt - rock reaction with the surrounding peridotite took place within this portion of the mantle. A Cr# of 84.5 from one of these dunite samples indicate that significant melt rock reaction with refractory melts took place. Such results are rarely found in mid-ocean ridge abyssal peridotite settings, and are currently found primarily in forearc tectonic settings

  1. Regional molecular and cellular differences in the female rabbit Achilles tendon complex: potential implications for understanding responses to loading.

    Science.gov (United States)

    Huisman, Elise S; Andersson, Gustav; Scott, Alexander; Reno, Carol R; Hart, David A; Thornton, Gail M

    2014-05-01

    The aim of this study was: (i) to analyze the morphology and expression of extracellular matrix genes in six different regions of the Achilles tendon complex of intact normal rabbits; and (ii) to assess the effect of ovariohysterectomy (OVH) on the regional expression of these genes. Female New Zealand White rabbits were separated into two groups: (i) intact normal rabbits (n = 4); and (ii) OVH rabbits (n = 8). For each rabbit, the Achilles tendon complex was dissected into six regions: distal gastrocnemius (DG); distal flexor digitorum superficialis; proximal lateral gastrocnemius (PLG); proximal medial gastrocnemius; proximal flexor digitorum superficialis; and paratenon. For each of the regions, hematoxylin and eosin staining was performed for histological evaluation of intact normal rabbit tissues and mRNA levels for proteoglycans, collagens and genes associated with collagen regulation were assessed by real-time reverse transcription-quantitative polymerase chain reaction for both the intact normal and OVH rabbit tissues. The distal regions displayed a more fibrocartilaginous phenotype. For intact normal rabbits, aggrecan mRNA expression was higher in the distal regions of the Achilles tendon complex compared with the proximal regions. Collagen Type I and matrix metalloproteinase-2 expression levels were increased in the PLG compared to the DG in the intact normal rabbit tissues. The tendons from OVH rabbits had lower gene expressions for the proteoglycans aggrecan, biglycan, decorin and versican compared with the intact normal rabbits, although the regional differences of increased aggrecan expression in distal regions compared with proximal regions persisted. The tensile and compressive forces experienced in the examined regions may be related to the regional differences found in gene expression. The lower mRNA expression of the genes examined in the OVH group confirms a potential effect of systemic estrogen on tendon.

  2. Implications of Cu and Ni toxicity in two members of the Hyalella azteca cryptic species complex: Mortality, growth, and bioaccumulation parameters.

    Science.gov (United States)

    Leung, Jessica; Witt, Jonathan D S; Norwood, Warren; Dixon, D George

    2016-11-01

    Hyalella azteca, an amphipod crustacean, is frequently used in freshwater toxicity tests. Since the mid-1980s, numerous organizations have collected and established cultures of H. azteca originating from localities across North America. However, H. azteca is actually a large cryptic species complex whose members satisfy both the biological and the phylogenetic species concepts. Genetic analysis at the mitochondrial COI gene has revealed that only 2 clades are cultured in 17 North American laboratories; however, there are 85 genetically divergent lineages within this complex in the wild. In the present study, 2 members (clades 1 and 8) of the H. azteca species complex were identified using the mitochondrial COI gene. These 2 clades were exposed to Cu or Ni for 14 d. A saturation-based mortality model and the general growth model were used to determine mortality (lethal concentration, 25% and 50% [LC25 and LC50], lethal body concentration, 25% and 50% [LBC25 and LBC50]) and growth (inhibitory concentration, 25% [IC25, IBC25]) endpoints, respectively. A modified saturation-based model was used to estimate metal bioaccumulation parameters. Clade 8 was significantly more tolerant than clade 1, with differences in LC50s. However, the effects of the metals on growth were not significantly different between clades, even though clade 1 was significantly larger than then clade 8. Differences in Cu or Ni bioaccumulation were not observed between clades 1 and 8. The differences in Cu and Ni LC50s may have implications for risk assessments, and it is recommended that toxicity experiments should only be performed with properly identified members of the H. azteca complex to maintain consistency among laboratories. Environ Toxicol Chem 2016;35:2817-2826. © 2016 SETAC.

  3. GRAIL Gravity Observations of the Transition from Complex Crater to Peak-Ring Basin on the Moon: Implications for Crustal Structure and Impact Basin Formation

    Science.gov (United States)

    Baker, David M. H.; Head, James W.; Phillips, Roger J.; Neumann, Gregory A.; Bierson, Carver J.; Smith, David E.; Zuber, Maria T.

    2017-01-01

    High-resolution gravity data from the Gravity Recovery and Interior Laboratory (GRAIL) mission provide the opportunity to analyze the detailed gravity and crustal structure of impact features in the morphological transition from complex craters to peak-ring basins on the Moon. We calculate average radial profiles for free-air anomalies and Bouguer anomalies for peak-ring basins, proto-basins, and the largest complex craters. Complex craters and proto-basins have free-air anomalies that are positively correlated with surface topography, unlike the prominent lunar mascons (positive free-air anomalies in areas of low elevation) associated with large basins. The Bouguer gravity anomaly profiles of complex craters are highly irregular, with central positive anomalies that are generally absent or not clearly tied to interior morphology. In contrast, gravity profiles for peak-ring basins (approx. 200 km to 580 km) are much more regular and are highly correlated with surface morphology. A central positive Bouguer anomaly is confined within the peak ring and a negative Bouguer anomaly annulus extends from the edge of the positive anomaly outward to about the rim crest. A number of degraded basins lacking interior peak rings have diameters and gravity patterns similar to those of well-preserved peak-ring basins. If these structures represent degraded peak-ring basins, the number of peak-ring basins on the Moon would increase by more than a factor of two to 34. The gravity anomalies within basins are interpreted to be due to uplift of the mantle confined within the peak ring and an annulus of thickened crust between the peak ring and rim crest. We hypothesize that mantle uplift is influenced by interaction between the transient cavity and the mantle. Further, mascon formation is generally disconnected from the number of basin rings formed and occurs over a wide range of basin sizes. These observations have important implications for models of basin and mascon formation on the

  4. GRAIL gravity observations of the transition from complex crater to peak-ring basin on the Moon: Implications for crustal structure and impact basin formation

    Science.gov (United States)

    Baker, David M. H.; Head, James W.; Phillips, Roger J.; Neumann, Gregory A.; Bierson, Carver J.; Smith, David E.; Zuber, Maria T.

    2017-08-01

    High-resolution gravity data from the Gravity Recovery and Interior Laboratory (GRAIL) mission provide the opportunity to analyze the detailed gravity and crustal structure of impact features in the morphological transition from complex craters to peak-ring basins on the Moon. We calculate average radial profiles of free-air anomalies and Bouguer anomalies for peak-ring basins, protobasins, and the largest complex craters. Complex craters and protobasins have free-air anomalies that are positively correlated with surface topography, unlike the prominent lunar mascons (positive free-air anomalies in areas of low elevation) associated with large basins. The Bouguer gravity anomaly profiles of complex craters are highly irregular, with central positive anomalies that are generally absent or not clearly tied to interior morphology. In contrast, gravity profiles for peak-ring basins (∼200 km to 580 km) are much more regular and are highly correlated with surface morphology. A central positive Bouguer anomaly is confined within the peak ring and a negative Bouguer anomaly annulus extends from the edge of the positive anomaly outward to about the rim crest. A number of degraded basins lacking interior peak rings have diameters and gravity patterns similar to those of well-preserved peak-ring basins. If these structures represent degraded peak-ring basins, the number of peak-ring basins on the Moon would increase by more than a factor of two to 34. The gravity anomalies within basins are interpreted to be due to uplift of the mantle confined within the peak ring and an annulus of thickened crust between the peak ring and rim crest. We hypothesize that mantle uplift is influenced by interaction between the transient cavity and the mantle. Further, mascon formation is generally disconnected from the number of basin rings formed and occurs over a wide range of basin sizes. These observations have important implications for models of basin and mascon formation on the Moon

  5. The Outcomes of Living Kidney Donation from Medically Complex Donors: Implications for the Donor and the Recipient.

    Science.gov (United States)

    Niemi, Matthew; Mandelbrot, Didier A

    2014-03-01

    Living kidney donation is an important option for patients with end-stage renal disease (ESRD), and has improved life expectancy and quality for patients otherwise requiring maintenance dialysis or deceased-donor transplantation. Given the favorable outcomes of live donation and the shortage of organs to transplant, individuals with potentially unfavorable demographic and clinical characteristics are increasingly being permitted to donate kidneys. While this trend has successfully expanded the live donor pool, it has raised concerns as to which acceptance criteria are safe. This review aims to summarize the existing literature on the outcomes of transplantation from medically complex, living kidney donors, including both donor and recipient outcomes when available.

  6. The economic implications of the enteric disease complex and its control by the utilization of pleuromutillins in swine

    Directory of Open Access Journals (Sweden)

    Veturia Ileana Nueleanu

    2007-12-01

    Full Text Available The enteric disease complex may have a great economic impact by decreasing the growth of the animals, the conversion-rate of the fodder and, implicitly, the quality of carcass. That results in low production values, in correlation with low costs of production and decreased profitability. A therapeutic protocol was established, being administered tiamullin in the period of maximum incidence ofthe disease –5 days before and after weaning in pig youth, and the same period of time for the fatten pigs. The average meat production increased with 37.04% in youth pigs and 29.23% in fat pigs, in comparison with the period before the therapy. The profit that was achieved in youth pigs was 95 %, in comparison with the investment (the medication that was 5 %. The value of the investment was 27% in fat pigs, in comparison with the materialized profit of 73 %. The ratio between the total investment values (tiamullin medication and the benefit obtained in posttherapeutic period was 1:3.76, for the enteric disease complex in swine.

  7. Mineral Chemistry of Melanite from Calcitic Ijolite, the Oka Carbonatite Complex, Canada:Implications for Multi-Pulse Magma Mixing

    Institute of Scientific and Technical Information of China (English)

    Wei Chen; Weiqi Zhang; Antonio Simonetti; Shaoyong Jiang

    2016-01-01

    Ti-rich garnet is found within calcitic ijolite from the Oka carbonatite complex in Can-ada, which is characterized by 58%–73% andradite component (2.12 wt.%–4.18 wt.% TiO2) and classi-fied as melanite. The garnet displays complex zoning and contains abundant high field strength ele-ments (HFSEs) and rare earth elements (REEs). Three groups (I, II, III) have been identified based on their petrographic nature. Compared to groups II and III, Group I garnet cores contain higher TiO2, MgO, HFSE, and REE and lower SiO2 abundances. The distinct chemical and petrographic signatures of the investigated garnets cannot be attributed to simple closed system crystallization, but they are consistent with the multi-pulse magma mixing. Combined with previously reported U-Pb ages for apa-tite from the calcitic ijolite, at least three stages of magma evolution and subsequent mixing have been involved in the generation of calcitic ijolite at Oka. The early-formed melt that generated Group I gar-net core was later mixed with at least two small-volume, more evolved melts. The intermediate stage melt formed the remaining garnet along with some pyroxene, calcite, nepheline, and apatite at 127±3.6 Ma. The youngest, most evolved melt generated the majority of pyroxene, calcite, nepheline, and apatite within the calcitic ijolite at 115±3.1 Ma.

  8. Social behavior and the superorganism: Implications for disease and stability in complex animal societies and Colony Collapse Disorder in Honeybees

    Directory of Open Access Journals (Sweden)

    Niccolo Caldararo

    2015-01-01

    Full Text Available Sociability, mass response to threat, food production and food sharing and an adaptable communication system are a suite of traits involved in the evolution of complex society in animals. Cycles of interaction characterize members of such societies and those of species in association that can affect disease structure in time and virulence. Colony Collapse Disorder (in North America, Honey Bee Depopulation Syndrome, or HBDS elsewhere shows similarity to a number of mass behavioural responses in other social animals, especially in ants. A number of questions regarding the cause of CCD continues to make progress in fighting the disease difficult. Here information is provided that may result in an isolation of factors to identify the syndrome of effects that lead to the disease, based on studies of disease avoidance and illness behaviour in other animal species. Most of the work to date to discover a cause has focused on a direct relationship between a pathogen or parasite or environmental condition and the Disorder. Dysfunctional mass behaviour is even seen in humans, as during the Black Plague. Disease avoidance is an important survival tactic for many animals and if the mechanism is modified by a pathogen or toxin unusual outcomes may result. In complex animal societies the opportunity for other forms of disruption of social life are numerous.

  9. Structure of p15PAF-PCNA complex and implications for clamp sliding during DNA replication and repair

    Science.gov (United States)

    de Biasio, Alfredo; de Opakua, Alain Ibáñez; Mortuza, Gulnahar B.; Molina, Rafael; Cordeiro, Tiago N.; Castillo, Francisco; Villate, Maider; Merino, Nekane; Delgado, Sandra; Gil-Cartón, David; Luque, Irene; Diercks, Tammo; Bernadó, Pau; Montoya, Guillermo; Blanco, Francisco J.

    2015-03-01

    The intrinsically disordered protein p15PAF regulates DNA replication and repair by binding to the proliferating cell nuclear antigen (PCNA) sliding clamp. We present the structure of the human p15PAF-PCNA complex. Crystallography and NMR show the central PCNA-interacting protein motif (PIP-box) of p15PAF tightly bound to the front-face of PCNA. In contrast to other PCNA-interacting proteins, p15PAF also contacts the inside of, and passes through, the PCNA ring. The disordered p15PAF termini emerge at opposite faces of the ring, but remain protected from 20S proteasomal degradation. Both free and PCNA-bound p15PAF binds DNA mainly through its histone-like N-terminal tail, while PCNA does not, and a model of the ternary complex with DNA inside the PCNA ring is consistent with electron micrographs. We propose that p15PAF acts as a flexible drag that regulates PCNA sliding along the DNA and facilitates the switch from replicative to translesion synthesis polymerase binding.

  10. A nickel hydride complex in the active site of methyl-coenzyme m reductase: implications for the catalytic cycle.

    Science.gov (United States)

    Harmer, Jeffrey; Finazzo, Cinzia; Piskorski, Rafal; Ebner, Sieglinde; Duin, Evert C; Goenrich, Meike; Thauer, Rudolf K; Reiher, Markus; Schweiger, Arthur; Hinderberger, Dariush; Jaun, Bernhard

    2008-08-20

    Methanogenic archaea utilize a specific pathway in their metabolism, converting C1 substrates (i.e., CO2) or acetate to methane and thereby providing energy for the cell. Methyl-coenzyme M reductase (MCR) catalyzes the key step in the process, namely methyl-coenzyme M (CH3-S-CoM) plus coenzyme B (HS-CoB) to methane and CoM-S-S-CoB. The active site of MCR contains the nickel porphinoid F430. We report here on the coordinated ligands of the two paramagnetic MCR red2 states, induced when HS-CoM (a reversible competitive inhibitor) and the second substrate HS-CoB or its analogue CH3-S-CoB are added to the enzyme in the active MCR red1 state (Ni(I)F430). Continuous wave and pulse EPR spectroscopy are used to show that the MCR red2a state exhibits a very large proton hyperfine interaction with principal values A((1)H) = [-43,-42,-5] MHz and thus represents formally a Ni(III)F430 hydride complex formed by oxidative addition to Ni(I). In view of the known ability of nickel hydrides to activate methane, and the growing body of evidence for the involvement of MCR in "reverse" methanogenesis (anaerobic oxidation of methane), we believe that the nickel hydride complex reported here could play a key role in helping to understand both the mechanism of "reverse" and "forward" methanogenesis.

  11. Complex nanominerals and ultrafine particles assemblages in phosphogypsum of the fertilizer industry and implications on human exposure

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Luis F.O., E-mail: felipeqma@yahoo.com.br [Catarinense Institute of Environmental Research and Human Development-IPADHC, Capivari de Baixo, Santa Catarina (Brazil); Hower, James C. [University of Kentucky Center for Applied Energy Research, Lexington, KY, 40511 (United States); Izquierdo, Maria; Querol, Xavier [Institute of Environmental Assessment and Water Research (IDAEA-CSIC) C/Lluis Sole y Sabaris s/n, 08028 Barcelona (Spain)

    2010-10-01

    Phosphogypsum (CaSO{sub 4}.2H{sub 2}O), a by-product of phosphate-rock processing, contains high amounts of impurities such P{sub 2}O{sub 5}, F, radioactive elements, organic substances, secondary nanominerals, and ultrafine particles (UFP) enriched in metals and metalloids. In this study, we examine phosphogypsum (PG) collected from abandoned fertilizer industry facility in south Brazil (Santa Catarina state). The fragile nature of nanominerals and UFP assemblages from fertilizer industry systems required novel techniques and experimental approaches. The investigation of the geochemistry of complex nanominerals and UFP assemblages was a prerequisite to accurately assess the environmental and human health risks of contaminants and cost-effective chemical and biogeological remediation strategies. Particular emphasis was placed on the study and characterization of the complex mixed nanominerals and UFP containing potentially toxic elements. Nanometer-sized phases in PG were characterized using energy-dispersive X-ray spectrometer (EDS), field-emission scanning electron microscope (FE-SEM), and high-resolution transmission electron microscopy (HR-TEM) images. The chemical composition and possible correlations with morphology of nanominerals and UFP, as well as aspects of nanominerals and UFP, are discussed in the context of human health exposure, as well as in relation to management of the nanominerals and UFP in PG environments.

  12. The complexities of adolescent dating and sexual relationships: fluidity, meaning(s), and implications for young adults' well-being.

    Science.gov (United States)

    Manning, Wendy D; Longmore, Monica A; Copp, Jennifer; Giordano, Peggy C

    2014-01-01

    The complexity of adolescents' dating and sexual lives is not easily operationalized with simple indicators of dating or sexual activity. While building on prior work that emphasizes the "risky" nature of adolescents' intimate relationships, we assess whether a variety of indicators reflecting the complexity of adolescents' relationships influence early adult well-being (i.e., depressive symptoms, self-esteem, gainful activity, intimate partner violence, and relationship quality). Our analysis of longitudinal data from the Toledo Adolescent Relationships Study showed that the number of adolescent dating and sexual partners does not uniformly influence indicators of young adult well-being, which is at odds with a risk framework. The number of dating partners with whom the individual was sexually active, and not the number of "casual" sex partners, increased the odds of intimate partner violence during young adulthood. Relationship churning and sexual nonexclusivity during adolescence were associated with lower relationship quality during young adulthood. Sexual nonexclusivity during adolescence influenced self-reports of depressive symptoms and lower self-esteem among young adults. Future research should develop more nuanced conceptualizations of adolescent dating and sexual relationships and integrate adolescent dating and sexual experiences into research on early adult well-being.

  13. Complex nanominerals and ultrafine particles assemblages in phosphogypsum of the fertilizer industry and implications on human exposure.

    Science.gov (United States)

    Silva, Luis F O; Hower, James C; Izquierdo, Maria; Querol, Xavier

    2010-10-01

    Phosphogypsum (CaSO(4).2H(2)O), a by-product of phosphate-rock processing, contains high amounts of impurities such P(2)O(5), F, radioactive elements, organic substances, secondary nanominerals, and ultrafine particles (UFP) enriched in metals and metalloids. In this study, we examine phosphogypsum (PG) collected from abandoned fertilizer industry facility in south Brazil (Santa Catarina state). The fragile nature of nanominerals and UFP assemblages from fertilizer industry systems required novel techniques and experimental approaches. The investigation of the geochemistry of complex nanominerals and UFP assemblages was a prerequisite to accurately assess the environmental and human health risks of contaminants and cost-effective chemical and biogeological remediation strategies. Particular emphasis was placed on the study and characterization of the complex mixed nanominerals and UFP containing potentially toxic elements. Nanometer-sized phases in PG were characterized using energy-dispersive X-ray spectrometer (EDS), field-emission scanning electron microscope (FE-SEM), and high-resolution transmission electron microscopy (HR-TEM) images. The chemical composition and possible correlations with morphology of nanominerals and UFP, as well as aspects of nanominerals and UFP, are discussed in the context of human health exposure, as well as in relation to management of the nanominerals and UFP in PG environments.

  14. Petrogenesis and Tectonic Implications of Paleoproterozoic Metapelitic Rocks in the Archean Kongling Complex from the Northern Yangtze Craton, South China

    Science.gov (United States)

    Li, Y.; Zheng, J.; Wang, W.; Xiong, Q.

    2015-12-01

    The Archean Kongling Complex in the northern Yangtze Craton is an ideal target to investigate the Precambrian accretion and evolution of continental crust in South China. This study aims to unravel the crustal evolution and tectonic setting of the Yangtze Craton during the Paleoproterozoic time, using integrated studies of petrography, zircon U-Pb and Hf isotopes and whole-rock geochemistry of Paleoproterozoic metapelitic rocks in the Kongling Complex. These rocks contain garnet, sillimanite, biotite, plagioclase, minor graphite and ilmenite. Zircons from the samples show nebulous sector-zoning and rim-core structure, suggesting both metamorphic origin and detrital origin with metamorphic overprints. The metamorphic zircons and metamorphic overprints have concordant 207Pb/206Pb age at ~2.0 Ga, while detrital grains yield three distinct concordant-age populations of >2.5 Ga, 2.4-2.2 Ga and 2.2-2.1 Ga. The age patterns indicate that the depositional age of the metasedimentary rocks was 2.1-2.0 Ga. Those 2.2-2.1 Ga detrital zircons with variable ɛHf(t) values (-7.28 to 2.97) suggest the addition of juvenile materials from depleted mantle to the crust during 2.2-2.1 Ga. The 2.4-2.2 Ga zircons have Hf model ages (TDM2) of ~2.6-3.5 Ga and >2.5 Ga zircons have TDM2 ages varying from 2.9 Ga to 3.3 Ga. The new data suggest that the Kongling Complex was originally a Paleoarchean (old up to 3.5 Ga) continental nucleus, which experienced multiple episodes of growth and reworking events at 3.3-3.2 Ga, 2.9 Ga, 2.7-2.6 Ga, 2.4-2.2 Ga and 2.2-2.1 Ga. In combination with available data, the new results in this study suggest a continent-arc-continent evolution model to explain the tectonic evolution of the Yangtze Craton during the Paleoproterozoic time: the western margin of Yangtze Craton was originally an individual continent, which underwent a reworking event during 2.4-2.2 Ga and a crust growth event caused by continent-arc collision during 2.2-2.1 Ga; it subsequently collided

  15. Implications for complex cognition from the hafting of tools with compound adhesives in the Middle Stone Age, South Africa

    Science.gov (United States)

    Wadley, Lyn; Hodgskiss, Tamaryn; Grant, Michael

    2009-01-01

    Compound adhesives made from red ochre mixed with plant gum were used in the Middle Stone Age (MSA), South Africa. Replications reported here suggest that early artisans did not merely color their glues red; they deliberately effected physical transformations involving chemical changes from acidic to less acidic pH, dehydration of the adhesive near wood fires, and changes to mechanical workability and electrostatic forces. Some of the steps required for making compound adhesive seem impossible without multitasking and abstract thought. This ability suggests overlap between the cognitive abilities of modern people and people in the MSA. Our multidisciplinary analysis provides a new way to recognize complex cognition in the MSA without necessarily invoking the concept of symbolism. PMID:19433786

  16. Study and implication of the high-pressure felsic granulite in the Qinling complex of East Qinling

    Institute of Scientific and Technical Information of China (English)

    刘良; 周鼎武; 王焰; 陈丹玲; 刘雁

    1996-01-01

    There is a typical assemblage of garnet + kyanite + microperthite + quartz + rutile in high-pressure (HP) felsic granulite of Qinling complex in Songshugou area. East Qinling. The HP granulite was formed at 800 -900℃ and 1.3 -1.6GPa and has experienced two stages of retrograde metamorphism at 600- 650 ℃, 0.8-1.0GPa and 500-600℃, 0.3-0.6GPa, forming two retrograde metamorphic assemblages of margarite + plagiodase (PlI)+quartz and sillimanite + biotite + plagioclase(PlII) + microdine+quartz, respectively. They construct a two-stage clockwise P-T path which shows down-pressure cooling in both early and late stage.

  17. Therapeutic implication of 'Iturin A' for targeting MD-2/TLR4 complex to overcome angiogenesis and invasion.

    Science.gov (United States)

    Dey, Goutam; Bharti, Rashmi; Ojha, Probir Kumar; Pal, Ipsita; Rajesh, Y; Banerjee, Indranil; Banik, Payel; Parida, Sheetal; Parekh, Aditya; Sen, Ramkrishna; Mandal, Mahitosh

    2017-03-24

    Tumor angiogenesis and invasion are deregulated biological processes that drive multistage transformation of tumors from a benign to a life-threatening malignant state activating multiple signaling pathways including MD-2/TLR4/NF-κB. Development of potential inhibitors of this signaling is emerging area for discovery of novel cancer therapeutics. In the current investigation, we identified Iturin A (A lipopeptide molecule from Bacillus megaterium) as a potent inhibitor of angiogenesis and cancer invasion by various in vitro and in vivo methods. Iturin A was found to suppress VEGF, a powerful inducer of angiogenesis and key player in tumor invasion, as confirmed by ELISA, western blot and real time PCR. Iturin A inhibited endothelial tube arrangement, blood capillary formation, endothelial sprouting and vascular growth inside the matrigel. In addition, Iturin A inhibited MMP-2/9 expression in MDA-MB-231 and HUVEC cells. Cancer invasion, migration and colony forming ability were significantly hampered by Iturin A. Expressions of MD-2/TLR4 and its downstream MyD88, IKK-α and NF-κB were also reduced in treated MDA-MB-231 and HUVEC cells. Western blot and immunofluorescence study showed that nuclear accumulation of NF-κB was hampered by Iturin A. MD-2 siRNA or plasmid further confirmed the efficacy of Iturin A by suppressing MD-2/TLR4 signaling pathway. The in silico docking study showed that the Iturin A interacted well with the MD-2 in MD-2/TLR4 receptor complex. Conclusively, inhibition of MD-2/TLR4 complex with Iturin A offered strategic advancement in cancer therapy.

  18. Late Quaternary development of the Croatan Beach Ridge Complex, Bogue Sound, Bogue Banks, NC, USA and implications for coastal evolution

    Science.gov (United States)

    Lazar, Kelly B.; Mallinson, David J.; Culver, Stephen J.

    2016-06-01

    Foraminiferal, sedimentological, geophysical, and geochronologic data were utilized to elucidate the late Quaternary geologic development of the Croatan Beach Ridge Complex (CBRC), Bogue Sound, and Bogue Banks, North Carolina, USA. The CBRC is a relict beach ridge feature located on the mainland. It is separated from the modern barrier island, Bogue Banks, by Bogue Sound. Seventeen cores along shore-normal and shore-parallel transects provided material for sedimentologic and foraminiferal analysis and resulted in the recognition of seven depositional facies representing a variety of coastal depositional environments. Chronologic and depositional facies data suggest the CBRC was initiated during MIS 5a and rapid southward progradation produced a cape structure. Eolian reactivation of the upper sand of the CBRC occurred during the last glacial maximum (∼18 ka). The age of flood tide delta deposits in Bogue Sound suggests that the Holocene barrier island, Bogue Banks, had formed by ∼6 ka. Shoreface ravinement resulted in a shoreface landward of the present shoreline by ∼3.5 ka. Seaward and westward spit progradation of Bogue Banks began ∼1.7 ka and continued to ∼1.3 ka. Normal marine salinity conditions were present in Bogue Sound ∼1.1 ka, suggesting removal of at least the narrowest parts of the barrier island, coeval with a previously documented segmentation of the southern Outer Banks barrier islands. Previous work has linked this segmentation to climate warming and increased tropical storm activity during the Medieval Climate Anomaly. This study illustrates the complex response of this coastal system to Pleistocene and Holocene sea-level and climate change over two major sea-level cycles. In particular, the regional geomorphology during MIS5a and the Holocene sea-level highstand differ significantly and this, in large part, was controlled by the antecedent geologic framework, resulted in the contrasting more localized coastal geomorphic response.

  19. Petrology of a Neoproterozoic Alaskan-type complex from the Eastern Desert of Egypt: Implications for mantle heterogeneity

    Science.gov (United States)

    Khedr, Mohamed Zaki; Arai, Shoji

    2016-10-01

    This paper details petrological and geochemical studies of an ultramafic-mafic intrusion in the Southern Eastern Desert of Egypt. The Dahanib complex shows a concentric zonation, from dunites at the core, through chromitites, clinopyroxene-rich dunites, wehrlites, harzburgites, gabbronorites and layered gabbros, to hornblende gabbros/diorites at the rim, similar to other Alaskan-type complexes. These lithologies typically feature cumulate textures and layering. Their pyroxenes (Mg#s, 0.54-0.94) evidence Fe, Mn and Na enrichment, but Al, Cr, Mg and Ti are depleted with differentiation. Their chromian spinels have a wide range of Cr# (0.31-0.61), along with high Ti and Fe, as a result of their origin through crystal accumulation and reaction with interstitial liquids. The clinopyroxenes (Cpxs) in peridotites and gabbroic rocks, which are high in REE concentration (2-100 times chondrite), are depleted in LREE relative to HREE and are similar to Cpx crystallized from asthenospheric melts. The mineral inclusions in spinel, the chemistry of Cpx in peridotites (rich in Al, Cr, Na, Ti and ΣREE = 13.7), and the melts in equilibrium with Cpx suggest that the Neoproterozoic lithosphere were partially refertilized by trace asthenospheric melts. The early magmas were possibly enriched by Mg, Cr, Ni, Ti, V and Sr, while the evolved types were rich in Fe, Mn, Na, Li, Zr, Co and REE via crystal accumulation and the interaction with interstitial liquids. The Neoproterozoic sub-arc mantle in Egypt is chemically heterogeneous and generally low in Nb, Ta, Zr and K, due to the low solubility of HFSE in slab-derived fluids and no other external addition of these elements. The large variations in lithology and chemistry, as well as the occurrence of scattered chromitite clots in the Dahanib peridotites, are related to a continuous supply of primitive magmas and/or the reaction between interstitial liquids and early cumulus crystals during multistage fractional crystallization. The

  20. High-Mg# andesitic lavas of the Shisheisky Complex, Northern Kamchatka: implications for primitive calc-alkaline magmatism

    Science.gov (United States)

    Bryant, J. A.; Yogodzinski, G. M.; Churikova, T. G.

    2011-05-01

    Primitive arc magmatism and mantle wedge processes are investigated through a petrologic and geochemical study of high-Mg# (Mg/Mg + Fe > 0.65) basalts, basaltic andesites and andesites from the Kurile-Kamchatka subduction system. Primitive andesitic samples are from the Shisheisky Complex, a field of Quaternary-age, monogenetic cones located in the Aleutian-Kamchatka junction, north of Shiveluch Volcano, the northernmost active composite volcano in Kamchatka. The Shisheisky lavas have Mg# of 0.66-0.73 at intermediate SiO2 (54-58 wt%) with low CaO (3.0 wt%) and K2O (>1.0 wt%). Olivine phenocryst core compositions of Fo90 appear to be in equilibrium with whole-rock `melts', consistent with the sparsely phyric nature of the lavas. Compared to the Shisheisky andesites, primitive basalts from the region (Kuriles, Tolbachik, Kharchinsky) have higher CaO (>9.9 wt%) and CaO/Al2O3 (>0.60), and lower whole-rock Na2O (andesites. The absence of plagioclase phenocrysts from the primitive andesitic lavas contrasts the plagioclase-phyric basalts, indicating relatively high pre-eruptive water contents for the primitive andesitic magmas compared to basalts. Estimated temperature and water contents for primitive basaltic andesites and andesites are 984-1,143°C and 4-7 wt% H2O. For primitive basalts they are 1,149-1,227°C and 2 wt% H2O. Petrographic and mineral compositions suggest that the primitive andesitic lavas were liquids in equilibrium with mantle peridotite and were not produced by mixing between basalts and felsic crustal melts, contamination by xenocrystic olivine, or crystal fractionation of basalt. Key geochemical features of the Shisheisky primitive lavas (high Ni/MgO, Na2O, Ni/Yb and Mg# at intermediate SiO2) combined with the location of the volcanic field above the edge of the subducting Pacific Plate support a genetic model that involves melting of eclogite or pyroxenite at or near the surface of the subducting plate, followed by interaction of that melt with

  1. The raised coral reef complex of the Kenyan coast: Tridacna gigas U-series dates and geological implications

    Science.gov (United States)

    Accordi, Giovanni; Brilli, Mauro; Carbone, Federico; Voltaggio, Mario

    2010-08-01

    The Kenyan coast is characterized by a raised fossil reef complex cut by a series of morphological terraces. Shallow subtidal coralgal facies containing Tridacna gigas shells are found at different heights along the coast. Alpha-spectrometric U-series methods were applied to 18 T. gigas samples from different locations along this reef complex with an elevation range from 0 to 15 m above present sea level to obtain chronological information. Apparent U-Th ages, based on the assumption of closed system behaviour, correspond to early marine isotope stage (MIS) 5 ( n = 17) and MIS 7 ( n = 1). However, initial 234U/ 238U activity ratios exhibit a wide range, in many cases much greater than present seawater, which is likely to be associated with diagenetic alteration and migration of U-series isotopes. For this reason, we attempted a form of open system isochron dating after separating the Tridacna samples into three different groups on the basis of current elevation and distribution along the coast. An 'isochron' age of 120 ± 4 ka (1 σ) was obtained for the higher elevation group, placed in the terraced central coastal area; another age, statistically undistinguishable from the previous one, of 118 ± 7 ka (1 σ) was obtained for the group confined along the northern coast. These two groups correspond to a transgressive-regressive cycle connected to the maximum sea level highstand during the MIS 5e. A third 'isochron' age of 100 ± 4 ka (1 σ) was obtained for the group confined along the southern coast, encompassing part of the isotopic substages MIS 5c and d. Based on these data, and on the ecology of T. gigas whose optimal present-day depth range can be considered of 3-10 m below sea level, a maximum tectonic coastal uplift rate of between, respectively, 0.12 and 0.18 mm a -1 was calculated for the period since formation of these shells, and then the paleobathymetry of Tridacna facies has been inferred.

  2. Xanthan Exopolysaccharide: Cu(2+) Complexes Affected from the pH-Dependent Conformational State; Implications for Environmentally Relevant Biopolymers.

    Science.gov (United States)

    Causse, Benjamin; Spadini, Lorenzo; Sarret, Géraldine; Faure, Adeline; Travelet, Christophe; Madern, Dominique; Delolme, Cécile

    2016-04-05

    The conformational impact of environmental biopolymers on metal sorption was studied through Cu sorption on xanthan. The apparent Cu(2+) complexation constant (logK; Cu(2+) + L(-) ↔ CuL(+)) decreased from 2.9 ± 0.1 at pH 3.5 to 2.5 ± 0.1 at pH 5.5 (ionic strength I = 0.1). This behavior is in apparent contradiction with basic thermodynamics, as usually the higher the pH the more cations bind. Our combined titration, circular dichroism and dynamic light scattering study indicated that the change observed in Cu bond strength relates to a conformational change of the structure of xanthan, which generates more chelating sites at pH 3.5 than at pH 5.5. This hypothesis was validated by the fact that the Cu sorption constants on xanthan were always higher than those measured on a mixture of pyruvic and glucuronic acids (logK = 2.2), which are the two constitutive ligands present in the xanthan monomer. This study shows the role of the structural conformation of natural biopolymers in metal bond strength. This finding may help to better predict the fate of Cu and other metals in acidic environmental settings such as aquatic media affected by acid mine drainage, as well as peats and acidic soils, and to better define optimal conditions for bioremediation processes.

  3. Fodrin in centrosomes: implication of a role of fodrin in the transport of gamma-tubulin complex in brain.

    Directory of Open Access Journals (Sweden)

    Sasidharan Shashikala

    Full Text Available Gamma-tubulin is the major protein involved in the nucleation of microtubules from centrosomes in eukaryotic cells. It is present in both cytoplasm and centrosome. However, before centrosome maturation prior to mitosis, gamma-tubulin concentration increases dramatically in the centrosome, the mechanism of which is not known. Earlier it was reported that cytoplasmic gamma-tubulin complex isolated from goat brain contains non-erythroid spectrin/fodrin. The major role of erythroid spectrin is to help in the membrane organisation and integrity. However, fodrin or non-erythroid spectrin has a distinct pattern of localisation in brain cells and evidently some special functions over its erythroid counterpart. In this study, we show that fodrin and γ-tubulin are present together in both the cytoplasm and centrosomes in all brain cells except differentiated neurons and astrocytes. Immunoprecipitation studies in purified centrosomes from brain tissue and brain cell lines confirm that fodrin and γ-tubulin interact with each other in centrosomes. Fodrin dissociates from centrosome just after the onset of mitosis, when the concentration of γ-tubulin attains a maximum at centrosomes. Further it is observed that the interaction between fodrin and γ-tubulin in the centrosome is dependent on actin as depolymerisation of microfilaments stops fodrin localization. Image analysis revealed that γ-tubulin concentration also decreased drastically in the centrosome under this condition. This indicates towards a role of fodrin as a regulatory transporter of γ-tubulin to the centrosomes for normal progression of mitosis.

  4. Crystal Structure of Human Factor VIII: Implications for the Formation of the Factor IXa-Factor VIIIa Complex

    Energy Technology Data Exchange (ETDEWEB)

    Ngo, J.C.; Huang, M.; Roth, D.A.; Furie, B.C.; Furie, B. (Wyeth); (MBL)

    2008-06-03

    Factor VIII is a procofactor that plays a critical role in blood coagulation, and is missing or defective in hemophilia A. We determined the X-ray crystal structure of B domain-deleted human factor VIII. This protein is composed of five globular domains and contains one Ca{sup 2+} and two Cu{sup 2+} ions. The three homologous A domains form a triangular heterotrimer where the A1 and A3 domains serve as the base and interact with the C2 and C1 domains, respectively. The structurally homologous C1 and C2 domains reveal membrane binding features. Based on biochemical studies, a model of the factor IXa-factor VIIIa complex was constructed by in silico docking. Factor IXa wraps across the side of factor VIII, and an extended interface spans the factor VIII heavy and light chains. This model provides insight into the activation of factor VIII and the interaction of factor VIIIa with factor IXa on the membrane surface.

  5. Crystal Structure of Human Factor VIII: Implications for the Formation of the Factor IXa-Factor VIIIa Complex

    Energy Technology Data Exchange (ETDEWEB)

    Chi Ki Ngo,J.; Huang, M.; Roth, D.; Furie, B.; Furie, B.

    2008-01-01

    Factor VIII is a procofactor that plays a critical role in blood coagulation, and is missing or defective in hemophilia A. We determined the X-ray crystal structure of B domain-deleted human factor VIII. This protein is composed of five globular domains and contains one Ca(2+) and two Cu(2+) ions. The three homologous A domains form a triangular heterotrimer where the A1 and A3 domains serve as the base and interact with the C2 and C1 domains, respectively. The structurally homologous C1 and C2 domains reveal membrane binding features. Based on biochemical studies, a model of the factor IXa-factor VIIIa complex was constructed by in silico docking. Factor IXa wraps across the side of factor VIII, and an extended interface spans the factor VIII heavy and light chains. This model provides insight into the activation of factor VIII and the interaction of factor VIIIa with factor IXa on the membrane surface.

  6. Exhumation of the Panama basement complex and basins: Implications for the closure of the Central American seaway

    Science.gov (United States)

    Ramírez, Diego A.; Foster, David A.; Min, Kyoungwon; Montes, Camilo; Cardona, Agustín.; Sadove, Gephen

    2016-05-01

    The emergence of the Central American isthmus occurred episodically from Eocene to Pliocene time and was caused by a series of tectonic and volcanic processes. Results from zircon U-Pb geochronology, zircon (U-Th)/He (ZHe) and apatite (U-Th)/He (AHe) thermochronology, and zircon Lu-Hf isotopic data from sedimentary (sandstones and recent river sands) and plutonic rocks from the Azuero Peninsula and Central Panama document the exhumation and uplift history of the Panamanian basement complex. Our data support previous paleobotanical and thermochronological studies that suggest that by middle Eocene time some areas of Central Panama and Azuero Peninsula were exposed above sea level as a series of islands surrounded by shallow open marine waters. The Gatuncillo, Cobachón and Tonosí formations were deposited during this partial emergence. Transtension in the Oligocene-early Miocene produced various pull-apart basins (e.g., the Canal Basin) and local uplift that exhumed the Eocene strata (Gatuncillo and Cobachón formations). This event probably reduced circulation between the Pacific Ocean and the Caribbean Sea. The Tonosí Formation records late Miocene to Pleistocene cooling and exhumation, which may be related to uplift above the subducting Coiba Ridge. These results suggest that the emergence of the Isthmus of Panama followed a series of diachronous events that led to the final closure of the Central American seaway.

  7. Broncho-pleural fistula with hydropneumothorax at CT: Diagnostic implications in mycobacterium avium complex lung disease with pleural involvement

    Energy Technology Data Exchange (ETDEWEB)

    Yoon, Hyun Jung; Chung, Myung Jin; Lee, Kyung Soo; Park, Hye Yun; Koh, Won Jung [Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul (Korea, Republic of); Kim, Jung Soo [Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Inha University Hospital, Inha University School of Medicine, Incheon (Korea, Republic of)

    2016-04-15

    To determine the patho-mechanism of pleural effusion or hydropneumothorax in Mycobacterium avium complex (MAC) lung disease through the computed tomographic (CT) findings. We retrospectively collected data from 5 patients who had pleural fluid samples that were culture-positive for MAC between January 2001 and December 2013. The clinical findings were investigated and the radiological findings on chest CT were reviewed by 2 radiologists. The 5 patients were all male with a median age of 77 and all had underlying comorbid conditions. Pleural fluid analysis revealed a wide range of white blood cell counts (410-100690/µL). The causative microorganisms were determined as Mycobacterium avium and Mycobacterium intracellulare in 1 and 4 patients, respectively. Radiologically, the peripheral portion of the involved lung demonstrated fibro-bullous changes or cavitary lesions causing lung destruction, reflecting the chronic, insidious nature of MAC lung disease. All patients had broncho-pleural fistulas (BPFs) and pneumothorax was accompanied with pleural effusion. In patients with underlying MAC lung disease who present with pleural effusion, the presence of BPFs and pleural air on CT imaging are indicative that spread of MAC infection is the cause of the effusion.

  8. Trimeric autotransporter adhesins in members of the Burkholderia cepacia complex: a multifunctional family of proteins implicated in virulence

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    Arsénio Mendes Fialho

    2011-12-01

    Full Text Available Trimeric autotransporter adhesins (TAAs are multimeric surface proteins, involved in various biological traits of pathogenic Gram-negative bacteria including adherence, biofilm formation, invasion, survival within eukaryotic cells, serum resistance and cytotoxicity. TAAs have a modular architecture composed by a conserved membrane-anchored C-terminal domain and a variable number of stalk and head domains. In this study, a bioinformatic approach has been used to analyze the distribution and architecture of TAAs among Burkholderia cepacia complex (Bcc genomes. Fifteen genomes were probed revealing a total of 74 encoding sequences. Compared with other bacterial species, the Bcc genomes contain a disproportionately large number of TAAs (two genes to up to 8 genes, such as in B.cenocepacia. Phylogenetic analysis showed that the TAAs grouped into at least eight distinct clusters. TAAs with serine-rich repeats are clearly well separated from others, thereby representing a different evolutionary lineage. Comparative gene mapping across Bcc genomes reveals that TAA genes are inserted within conserved synteny blocks. We further focused our analysis on the epidemic strain B. cenocepacia J2315 in which 7 TAAs were annotated. Among these, 3 TAA-encoding genes (BCAM019, BCAM0223 and BCAM0224 are organized into a cluster and are candidates for multifunctional virulence factors. Here we review the current insights into the functional role of BCAM0224 as a model locus.

  9. The Sleep Elaboration-Awake Pruning (SEAP) theory of memory: long term memories grow in complexity during sleep and undergo selection while awake. Clinical, psychopharmacological and creative implications.

    Science.gov (United States)

    Charlton, Bruce G; Andras, Peter

    2009-07-01

    Long term memory (LTM) systems need to be adaptive such that they enhance an organism's reproductive fitness and self-reproducing in order to maintain their complexity of communications over time in the face of entropic loss of information. Traditional 'representation-consolidation' accounts conceptualize memory adaptiveness as due to memories being 'representations' of the environment, and the longevity of memories as due to 'consolidation' processes. The assumption is that memory representations are formed while an animal is awake and interacting with the environment, and these memories are consolidated mainly while the animal is asleep. So the traditional view of memory is 'instructionist' and assumes that information is transferred from the environment into the brain. By contrast, we see memories as arising endogenously within the brain's LTM system mainly during sleep, to create complex but probably maladaptive memories which are then simplified ('pruned') and selected during the awake period. When awake the LTM system is brought into a more intense interaction with past and present experience. Ours is therefore a 'selectionist' account of memory, and could be termed the Sleep Elaboration-Awake Pruning (or SEAP) theory. The SEAP theory explains the longevity of memories in the face of entropy by the tendency for memories to grow in complexity during sleep; and explains the adaptiveness of memory by selection for consistency with perceptions and previous memories during the awake state. Sleep is therefore that behavioural state during which most of the internal processing of the system of LTM occurs; and the reason sleep remains poorly understood is that its primary activity is the expansion of long term memories. By re-conceptualizing the relationship between memory, sleep and the environment; SEAP provides a radically new framework for memory research, with implications for the measurement of memory and the design of empirical investigations in clinical

  10. The complex remuneration of human resources for health in low-income settings: policy implications and a research agenda for designing effective financial incentives.

    Science.gov (United States)

    Bertone, Maria Paola; Witter, Sophie

    2015-07-28

    Human resources for health represent an essential component of health systems and play a key role to accelerate progress towards universal health coverage. Many countries in sub-Saharan Africa face challenges regarding the availability, distribution and performance of health workers, which could be in part addressed by providing effective financial incentives. Based on an overview of the existing literature, the paper highlights the gaps in the existing research in low-income countries exploring the different components of health workers' incomes. It then proposes a novel approach to the analysis of financial incentives and delineates a research agenda, which could contribute to shed light on this topic. The article finds that, while there is ample research that investigates separately each of the incomes health workers may earn (for example, salary, fee-for-service payments, informal incomes, "top-ups" and per diems, dual practice and non-health activities), there is a dearth of studies which look at the health workers' "complex remuneration", that is, the whole of the financial incentives available. Little research exists which analyses simultaneously all revenues of health workers, quantifies the overall remuneration and explores its complexity, its multiple components and their features, as well as the possible interaction between income components. However, such a comprehensive approach is essential to fully comprehend health workers' incentives, by investigating the causes (at individual and system level) of the fragmentation in the income structure and the variability in income levels, as well as the consequences of the "complex remuneration" on motivation and performance. This proposition has important policy implications in terms of devising effective incentive packages as it calls for an active consideration of the role that "complex remuneration" plays in determining recruitment, retention and motivation patterns, as well as, more broadly, the

  11. Formation of a unique zinc carbamate by CO2 fixation: implications for the reactivity of tetra-azamacrocycle ligated Zn(II) complexes.

    Science.gov (United States)

    Notni, Johannes; Schenk, Stephan; Görls, Helmar; Breitzke, Hergen; Anders, Ernst

    2008-02-18

    The macrocyclic ligand [13]aneN 4 ( L1, 1,4,7,10-tetra-azacyclotridecane) was reacted with Zn(II) perchlorate and CO 2 in an alkaline methanol solution. It was found that, by means of subtle changes in reaction conditions, two types of complexes can be obtained: (a) the mu 3 carbonate complex 1, {[Zn( L1)] 3(mu 3-CO 3)}(ClO 4) 4, rhombohedral crystals, space group R3 c, with pentacoordinate zinc in a trigonal bipyramidal enviroment, and (b) an unprecedenced dimeric Zn(II) carbamate structure, 2, [Zn( L2)] 2(ClO 4) 2, monoclinic crystals, space group P2 1/ n. The ligand L2 (4-carboxyl-1,4,7,10-tetra-azacyclotridecane) is a carbamate derivative of L1, obtained by transformation of a hydrogen atom of one of the NH moieties into carbamate by means of CO 2 uptake. In compound 2, the distorted tetrahedral Zn(II) coordinates to the carbamate moiety in a monodentate manner. Most notably, carbamate formation can occur upon reaction of CO 2 with the [Zn L1] (2+) complex, which implicates that a Zn-N linkage is cleaved upon attack of CO 2. Since complexes of tetra-azamacrocycles and Zn(II) are routinely applied for enzyme model studies, this finding implies that the Zn-azamacrocycle moiety generally should no longer be considered to play always only an innocent role in reactions. Rather, its reactivity has to be taken into account in respective investigations. In the presence of water, 2 is transformed readily into carbonate 1. Both compounds have been additionally characterized by solid-state NMR and infrared spectroscopy. A thorough comparison of 1 with related azamacrocycle ligated zinc(II) carbonates as well as a discussion of plausible reaction paths for the formation of 2 are given. Furthermore, the infrared absorptions of the carbamate moiety have been assigned by calculating the vibrational modes of the carbamate complex using DFT methods and the vibrational spectroscopy calculation program package SNF.

  12. Igneous evolution of a complex laccolith-caldera, the Solitario, Trans-Pecos Texas: Implications for calderas and subjacent plutons

    Science.gov (United States)

    Henry, C.D.; Kunk, M.J.; Muehlberger, W.R.; McIntosh, W.C.

    1997-01-01

    The Solitario is a large, combination laccolith and caldera (herein termed "laccocaldera"), with a 16-km-diameter dome over which developed a 6 x 2 km caldera. This laccocaldera underwent a complex sequence of predoming sill, laccolith, and dike intrusion and concurrent volcanism; doming with emplacement of a main laccolith; ash-flow eruption and caldera collapse; intracaldera sedimentation and volcanism; and late intrusion. Detailed geologic mapping and 40Ar/39Ar dating reveal that the Solitario evolved over an interval of approximately 1 m.y. in three distinct pulses at 36.0, 35.4, and 35.0 Ma. The size, duration, and episodicity of Solitario magmatism are more typical of large ash-flow calderas than of most previously described laccoliths. Small volumes of magma intruded as abundant rhyolitic to trachytic sills and small laccoliths and extruded as lavas and tuffs during the first pulse at 36.0 Ma. Emplacement of the main laccolith, doming, ash-flow eruption, and caldera collapse occurred at 35.4 Ma during the most voluminous pulse. A complex sequence of debris-flow and debris-avalanche deposits, megabreccia, trachyte lava, and minor ash-flow tuff subsequently filled the caldera. The final magmatic pulse at 35.0 Ma consisted of several small laccoliths or stocks and numerous dikes in caldera fill and along the ring fracture. Solitario rocks appear to be part of a broadly cogenetic, metaluminous suite. Peralkaline rhyolite lava domes were emplaced north and west of the Solitario at approximately 35.4 Ma, contemporaneous with laccolith emplacement and the main pulse in the Solitario. The spatial and temporal relation along with sparse geochemical data suggest that the peralkaline rhyolites are crustal melts related to the magmatic-thermal flux represented by the main pulse of Solitario magmatism. Current models of laccolith emplacement and evolution suggest a continuum from initial sill emplacement through growth of the main laccolith. Although the Solitario

  13. Quantifying seasonal volume of groundwater in high elevation meadows: Implications for complex aquifer geometry in a changing climate

    Science.gov (United States)

    Ciruzzi, Dominick M.

    . In order to test this hypothesis, this research first identified complex aquifer geometry controlled by bedrock depths from a ground-penetrating radar field campaign in Tuolumne Meadows, CA. This research then quantified the hydrogeologic impacts of a uniform sediment thickness model against a variable sediment thickness model under scenarios that simulated different high elevation meadows by incorporating ranges of hydraulic conductivity and topographic gradient. These scenarios also tested different stream flow and recharge rates, which simulated different volumes of snowpack. Results imply that bedrock geometry impact both the timing and magnitude of volume of groundwater (i.e. active storage) retention as well as release to streams and vegetation under both current and future snowpack simulations. In most cases, a uniform thickness meadow overestimated volume of groundwater retained from recharge and released to the stream both spatially and temporally. In doing so, volume of surface water transferred to downstream users was also overestimated. These overestimations are significant and, depending on the type of meadow, can miscalculate the water supply to San Francisco by several days worth of water. This research also indicated a reduction of up to 70% water supply from these meadows as a result of future decreases in snowpack. Spatially within the meadow, a uniform thickness model further overestimated volume of groundwater nearest to bedrock outcrops. This suggested that a uniform thickness model did not successfully identify spatially vulnerable regions on the meadow scale. This research concludes that efficient and effective monitoring and management of the water to and from these ecosystems must consider the substantial impacts of complex aquifer geometry.

  14. The Functional Anatomy of the Carpometacarpal Complex in Anthropoids and Its Implications for the Evolution of the Hominoid Hand.

    Science.gov (United States)

    Selby, Michael S; Simpson, Scott W; Lovejoy, C Owen

    2016-05-01

    Previously, we described several features of the carpometacarpal joints in extant large-bodied apes that are likely adaptations to the functional demands of vertical climbing and suspension. We observed that all hominids, including modern humans and the 4.4-million-year-old hominid Ardipithecus ramidus, lacked these features. Here, we assess the uniqueness of these features in a large sample of monkey, ape, and human hands. These new data provide additional insights into the functional adaptations and evolution of the anthropoid hand. Our survey highlights a series of anatomical adaptations that restrict motion between the second and third metacarpals (MC2 and MC3) and their associated carpals in extant apes, achieved via joint reorganization and novel energy dissipation mechanisms. Their hamate-MC4 and -MC5 joint surface morphologies suggest limited mobility, at least in Pan. Gibbons and spider monkeys have several characters (angled MC3, complex capitate-MC3 joint topography, variably present capitate-MC3 ligaments) that suggest functional convergence in response to suspensory locomotion. Baboons have carpometacarpal morphology suggesting flexion/extension at these joints beyond that observed in most other Old World monkeys, probably as an energy dissipating mechanism minimizing collision forces during terrestrial locomotion. All hominids lack these specializations of the extant great apes, suggesting that vertical climbing was never a central feature of our ancestral locomotor repertoire. Furthermore, the reinforced carpometacarpus of vertically climbing African apes was likely appropriated for knuckle-walking in concert with other novel potential energy dissipating mechanisms. The most parsimonious explanation of the structural similarity of these carpometacarpal specializations in great apes is that they evolved independently.

  15. A complex systems approach to evaluate HIV prevention in metropolitan areas: preliminary implications for combination intervention strategies.

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    Brandon D L Marshall

    Full Text Available BACKGROUND: HIV transmission among injecting and non-injecting drug users (IDU, NIDU is a significant public health problem. Continuing propagation in endemic settings and emerging regional outbreaks have indicated the need for comprehensive and coordinated HIV prevention. We describe the development of a conceptual framework and calibration of an agent-based model (ABM to examine how combinations of interventions may reduce and potentially eliminate HIV transmission among drug-using populations. METHODOLOGY/PRINCIPAL FINDINGS: A multidisciplinary team of researchers from epidemiology, sociology, geography, and mathematics developed a conceptual framework based on prior ethnographic and epidemiologic research. An ABM was constructed and calibrated through an iterative design and verification process. In the model, "agents" represent IDU, NIDU, and non-drug users who interact with each other and within risk networks, engaging in sexual and, for IDUs, injection-related risk behavior over time. Agents also interact with simulated HIV prevention interventions (e.g., syringe exchange programs, substance abuse treatment, HIV testing and initiate antiretroviral treatment (ART in a stochastic manner. The model was constructed to represent the New York metropolitan statistical area (MSA population, and calibrated by comparing output trajectories for various outcomes (e.g., IDU/NIDU prevalence, HIV prevalence and incidence against previously validated MSA-level data. The model closely approximated HIV trajectories in IDU and NIDU observed in New York City between 1992 and 2002, including a linear decrease in HIV prevalence among IDUs. Exploratory results are consistent with empirical studies demonstrating that the effectiveness of a combination of interventions, including syringe exchange expansion and ART provision, dramatically reduced HIV prevalence among IDUs during this time period. CONCLUSIONS/SIGNIFICANCE: Complex systems models of adaptive HIV

  16. The complex exposure histories of the Pitts and Horse Creek iron meteorites: Implications for meteorite delivery models

    Science.gov (United States)

    Welten, K. C.; Nishiizumi, K.; Lavielle, B.; Caffee, M. W.; Hillegonds, D. J.; Finkel, R. C.; Kollar, D.; Masarik, J.

    2008-08-01

    The concentrations of cosmogenic radionuclides and noble gases in Pitts (IAB) and Horse Creek (ungrouped) provide unambiguous evidence that both irons have a complex exposure history with a first-stage irradiation of 100-600 Myr under high shielding, followed by a second-stage exposure of ˜1 Myr as small objects. The first-stage exposure ages of ˜100 Myr for Horse Creek and ˜600 Myr for Pitts are similar to cosmic-ray exposure ages of other iron meteorites, and most likely represent the Yarkovsky orbital drift times of irons from their parent bodies in the main asteroid belt to one of the nearby chaotic resonance zones. The short second-stage exposure ages indicate that collisional debris from recent impact events on their precursor objects was quickly delivered to Earth. The short delivery times suggests that the recent collision events occurred while the precursor objects of Horse Creek and Pitts were either very close to the chaotic resonance zones or already in Earth-crossing orbits. Since the cosmogenic noble gas records of Horse Creek and Pitts indicate a minimum radius of a few meters for the precursor objects, but do not exclude km-sized objects, we conclude that these irons may represent fragments of two near-Earth asteroids, 3103 Eger and 1986 DA, respectively. Finally, we used the cosmogenic nuclide concentrations in Horse Creek, which contains 2.5 wt% Si, to test current model calculations for the production of cosmogenic 10Be, 26Al, and neonisotopes from iron, nickel, and silicon.

  17. The airway microbiota in cystic fibrosis: a complex fungal and bacterial community--implications for therapeutic management.

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    Laurence Delhaes

    Full Text Available BACKGROUND: Given the polymicrobial nature of pulmonary infections in patients with cystic fibrosis (CF, it is essential to enhance our knowledge on the composition of the microbial community to improve patient management. In this study, we developed a pyrosequencing approach to extensively explore the diversity and dynamics of fungal and prokaryotic populations in CF lower airways. METHODOLOGY AND PRINCIPAL FINDINGS: Fungi and bacteria diversity in eight sputum samples collected from four adult CF patients was investigated using conventional microbiological culturing and high-throughput pyrosequencing approach targeting the ITS2 locus and the 16S rDNA gene. The unveiled microbial community structure was compared to the clinical profile of the CF patients. Pyrosequencing confirmed recently reported bacterial diversity and observed complex fungal communities, in which more than 60% of the species or genera were not detected by cultures. Strikingly, the diversity and species richness of fungal and bacterial communities was significantly lower in patients with decreased lung function and poor clinical status. Values of Chao1 richness estimator were statistically correlated with values of the Shwachman-Kulczycki score, body mass index, forced vital capacity, and forced expiratory volume in 1 s (p = 0.046, 0.047, 0.004, and 0.001, respectively for fungal Chao1 indices, and p = 0.010, 0.047, 0.002, and 0.0003, respectively for bacterial Chao1 values. Phylogenetic analysis showed high molecular diversities at the sub-species level for the main fungal and bacterial taxa identified in the present study. Anaerobes were isolated with Pseudomonas aeruginosa, which was more likely to be observed in association with Candida albicans than with Aspergillus fumigatus. CONCLUSIONS: In light of the recent concept of CF lung microbiota, we viewed the microbial community as a unique pathogenic entity. We thus interpreted our results to highlight the potential

  18. A novel non-lens betagamma-crystallin and trefoil factor complex from amphibian skin and its functional implications.

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    Shu-Bai Liu

    Full Text Available BACKGROUND: In vertebrates, non-lens betagamma-crystallins are widely expressed in various tissues, but their functions are unknown. The molecular mechanisms of trefoil factors, initiators of mucosal healing and being greatly involved in tumorigenesis, have remained elusive. PRINCIPAL FINDINGS: A naturally existing 72-kDa complex of non-lens betagamma-crystallin (alpha-subunit and trefoil factor (beta-subunit, named betagamma-CAT, was identified from frog Bombina maxima skin secretions. Its alpha-subunit and beta-subunit (containing three trefoil factor domains, with a non-covalently linked form of alphabeta(2, show significant sequence homology to ep37 proteins, a group of non-lens betagamma-crystallins identified in newt Cynops pyrrhogaster and mammalian trefoil factors, respectively. betagamma-CAT showed potent hemolytic activity on mammalian erythrocytes. The specific antiserum against each subunit was able to neutralize its hemolytic activity, indicating that the two subunits are functionally associated. betagamma-CAT formed membrane pores with a functional diameter about 2.0 nm, leading to K(+ efflux and colloid-osmotic hemolysis. High molecular weight SDS-stable oligomers (>240-kDa were detected by antibodies against the alpha-subunit with Western blotting. Furthermore, betagamma-CAT showed multiple cellular effects on human umbilical vein endothelial cells. Low dosages of betagamma-CAT (25-50 pM were able to stimulate cell migration and wound healing. At high concentrations, it induced cell detachment (EC(50 10 nM and apoptosis. betagamma-CAT was rapidly endocytosed via intracellular vacuole formation. Under confocal microscope, some of the vacuoles were translocated to nucleus and partially fused with nuclear membrane. Bafilomycin A1 (a specific inhibitor of the vacuolar-type ATPase and nocodazole (an agent of microtuble depolymerizing, while inhibited betagamma-CAT induced vacuole formation, significantly inhibited betagamma

  19. Turnover is rate-limited by deglycosylation for Micromonospora viridifaciens sialidase-catalyzed hydrolyses: conformational implications for the Michaelis complex.

    Science.gov (United States)

    Chan, Jefferson; Lu, April; Bennet, Andrew J

    2011-03-09

    A panel of seven isotopically substituted sialoside natural substrate analogues based on the core structure 7-(5-acetamido-3,5-dideoxy-d-glycero-α-d-galacto-non-2-ulopyranosylonic acid)-(2→6)-β-D-galactopyranosyloxy)-8-fluoro-4-methylcoumarin (1, Neu5Acα2,6GalβFMU) have been synthesized and used to probe the rate-limiting step for turnover by the M. viridifaciens sialidase. The derived kinetic isotope effects (KIEs) on k(cat) for the ring oxygen ((18)V), leaving group oxygen ((18)V), anomeric carbon ((13)V), C3-carbon ((13)V), C3-R deuterium ((D)V(R)), C3-S deuterium ((D)V(S)), and C3-dideuterium ((D)(2)V) are 0.986 ± 0.003, 1.003 ± 0.005, 1.021 ± 0.006, 1.001 ± 0.008, 1.029 ± 0.007, 0.891 ± 0.008, and 0.890 ± 0.006, respectively. The solvent deuterium KIE ((D(2)O)V) for the sialidase-catalyzed hydrolysis of 1 is 1.585 ± 0.004. In addition, a linear proton inventory was measured for the rate of hydrolysis, under saturating condition, as a function of n, the fraction of deuterium in the solvent. These KIEs are compatible with rate-determining cleavage of the enzymatic tyrosinyl β-sialoside intermediate. Moreover, the secondary deuterium KIEs are consistent with the accumulating Michaelis complex in which the sialosyl ring of the carbohydrate substrate is in a (6)S(2) skew boat conformation. These KIE measurements are also consistent with the rate-determining deglycosylation reaction occurring via an exploded transition state in which synchronous charge delocalization is occurring onto the ring oxygen atom. Finally, the proton inventory and the magnitude of the solvent KIE are consistent with deglycosylation involving general acid-catalyzed protonation of the departing tyrosine residue rather than general base-assisted attack of the nucleophilic water.

  20. Quaternary bimodal volcanism in the Niğde Volcanic Complex (Cappadocia, central Anatolia, Turkey): age, petrogenesis and geodynamic implications

    Science.gov (United States)

    Aydin, Faruk; Schmitt, Axel K.; Siebel, Wolfgang; Sönmez, Mustafa; Ersoy, Yalçın; Lermi, Abdurrahman; Dirik, Kadir; Duncan, Robert

    2014-11-01

    The late Neogene to Quaternary Cappadocian Volcanic Province (CVP) in central Anatolia is one of the most impressive volcanic fields of Turkey because of its extent and spectacular erosionally sculptured landscape. The late Neogene evolution of the CVP started with the eruption of extensive andesitic-dacitic lavas and ignimbrites with minor basaltic lavas. This stage was followed by Quaternary bimodal volcanism. Here, we present geochemical, isotopic (Sr-Nd-Pb and δ18O isotopes) and geochronological (U-Pb zircon and Ar-Ar amphibole and whole-rock ages) data for bimodal volcanic rocks of the Niğde Volcanic Complex (NVC) in the western part of the CVP to determine mantle melting dynamics and magmatic processes within the overlying continental crust during the Quaternary. Geochronological data suggest that the bimodal volcanic activity in the study area occurred between ca. 1.1 and ca. 0.2 Ma (Pleistocene) and comprises (1) mafic lavas consisting of basalts, trachybasalts, basaltic andesites and scoria lapilli fallout deposits with mainly basaltic composition, (2) felsic lavas consisting of mostly rhyolites and pumice lapilli fall-out and surge deposits with dacitic to rhyolitic composition. The most mafic sample is basalt from a monogenetic cone, which is characterized by 87Sr/86Sr = 0.7038, 143Nd/144Nd = 0.5128, 206Pb/204Pb = 18.80, 207Pb/204Pb = 15.60 and 208Pb/204Pb = 38.68, suggesting a moderately depleted signature of the mantle source. Felsic volcanic rocks define a narrow range of 143Nd/144Nd isotope ratios (0.5126-0.5128) and are homogeneous in Pb isotope composition (206Pb/204Pb = 18.84-18.87, 207Pb/204Pb = 15.64-15.67 and 208Pb/204Pb = 38.93-38.99). 87Sr/86Sr isotopic compositions of mafic (0.7038-0.7053) and felsic (0.7040-0.7052) samples are similar, reflecting a common mantle source. The felsic rocks have relatively low zircon δ18O values (5.6 ± 0.6 ‰) overlapping mantle values (5.3 ± 0.3 %), consistent with an origin by fractional crystallization

  1. Complex remanent magnetization in the Kızılkaya ignimbrite (central Anatolia): Implication for paleomagnetic directions

    Science.gov (United States)

    Agrò, Alessandro; Zanella, Elena; Le Pennec, Jean-Luc; Temel, Abidin

    2017-04-01

    site-mean paleomagnetic direction is consistent with data from the literature. At a few other sites, the remanence is more complex: the direction moves along a great circle during demagnetization and no stable end-point is reached. The occurrence of oxidized Ti-magnetite or hematite as well as two remanence components with overlapping coercivity and blocking temperature spectra suggest that the Kızılkaya ignimbrite acquired first a thermal remanent magnetization and then, during the final cooling or a short time later, a secondary remanent magnetization component which is interpreted as a CRM acquired during post-emplacement devitrification processes. Notwithstanding the Kızılkaya ignimbrite is a single cooling unit, its magnetic properties suffered substantial variations laterally and vertically within the deposit. The Kızılkaya case shows that thick pyroclastic deposits should be sampled using a stratigraphic approach, at different sites and different stratigraphic heights at each individual sampling location, otherwise, under-sampling may significantly affect the paleomagnetic results. When sampling is performed on a short duration or on very poorly preserved deposits we recommend drilling the lower-central portion in the most strongly welded and devitrified facies. Such sampling strategy avoids complications arising from the potential presence of a pervasive secondary CRM masking the original ChRM.

  2. Geometry and thermal structure of the Menderes Massif Core Complex (Western Turkey), implications for thermal evolution of Hellenic subduction zone

    Science.gov (United States)

    Roche, Vincent; Jolivet, Laurent; Guillou-Frottier, Laurent; Tuduri, Johann; Bouchot, Vincent; Beccaletto, Laurent; Lahfid, Abdeltif

    2016-04-01

    The eastern Mediterranean region is one of the most promising geothermal areas, with more than 250 geothermal fields discovered in Turkey (Parlaktuna, 2013), in a region of active tectonics and volcanism. Although the potential of these deep geothermal resources has not been systematically investigated yet, the geothermal activity of the western Turkey area is the most recent signature of the high heat flow (120-140 mW/m²; Aydin, 2005, from Teczan, 1995). Based on Turkish data, 2084 MWt are being utilized for direct applications and most of the energy originates from the Menderes Massif (Baba et al., 2015). This large-scale thermal anomaly at the surface is correlated to a long wavelength east-west increase of surface heat flow that could reflect the thermal state of Aegean subduction zone at depth. In order to better understand and characterize the possible connections between large-scale mantle dynamics and surface processes in space and time, we study the structure and thermal evolution of the Menderes Massif. Both the acceleration of the Aegean extension in the Middle Miocene and the recent escape of Anatolia have been proposed to result from several slab tearing events, the first one being located below western Turkey and the Eastern Aegean Sea. These events have triggered the formation of metamorphic complexes with contrasted exhumation P-T paths. While the extension in the Aegean domain is well-characterized with high-temperature domes in the center and east, the succession of several metamorphic events in the Menderes Massif and their significance in terms of geodynamics is still debated. Hence, the exhumation history is key to understanding the temporal and spatial distribution of the thermal signature of the Hellenic slab and its tearing/detachment. The Menderes Massif displays a large variety of metamorphic facies, from the Barrovian type metamorphism in the Eocene (the Main Menderes Metamorphism) to the coeval (?) HP-LT metamorphism on the southernmost

  3. Gonadal hormone dependent developmental plasticity of catecholamine:β2-adrenoceptor signaling complex in male rat thymus: putative implications for thymopoiesis.

    Science.gov (United States)

    Pilipović, Ivan; Radojević, Katarina; Kosec, Duško; Nanut, Milica Perišić; Stojić-Vukanić, Zorica; Arsenović-Ranin, Nevena; Leposavić, Gordana

    2013-12-15

    The study was undertaken considering that: i) androgens affect β2-adrenoceptor (AR)-mediated catecholamine (CA) action in many tissues; and ii) peripubertal changes in both circulating androgen and thymic CA levels are implicated in rat thymic involution. Its aims were to: i) explore putative effects of the late prepubertal orchidectomy on thymic CA:β2-AR complex in young adult rats, and ii) delineate the direct effects of testicular hormone withdrawal on the CA:β2-AR complex from those elicited secondarily through altered influence of this complex components on each other's availability. Upon showing that prepubertal orchidectomy augmented the efficacy of thymopoiesis through increasing the thymocyte surface density of Thy-1, whose expression is negatively regulated by β2-AR-mediated signaling, we examined the effects of orchidectomy and 14-day-long propranolol (PROP) treatment in orchidectomized (ORX) and sham-ORX rats on thymic norepinephrine (NE) concentration and metabolism and β2-AR expression. Orchidectomy, despite an increase in the average NE amount per thymocyte and total thymocyte NE content, diminished thymic NE concentration. This decrease reflected the diminished density of CA-synthesizing nerve fibers, CD68+ macrophages, cortical (aminopeptidase A+), and medullary (UEA-1+) thymic epithelial cells (TECs) and their CA content (probably due to lessened TH expression accompanied by increased MAO-A expression). Moreover, orchidectomy decreased the surface β2-AR expression on thymocytes, CD68+ macrophages and OX-62+ dendritic cells, but increased its expression on the TECs. In sham-ORX rats, PROP reduced thymic NE concentration by diminishing TH expression in the thymic cells. Additionally, PROP in thymocytes and thymic stromal cells diminished and enhanced the β2-AR mRNA expression, respectively. However, in ORX rats PROP did not significantly affect CA(NE):β2-AR complex components. This indicated that prepubertal orchidectomy affects ability of

  4. Cornelia de Lange syndrome and molecular implications of the cohesin complex: Abstracts from the 7th biennial scientific and educational symposium 2016.

    Science.gov (United States)

    Kline, Antonie D; Krantz, Ian D; Deardorff, Matthew A; Shirahige, Katsuhiko; Dorsett, Dale; Gerton, Jennifer L; Wu, Meng; Mehta, Devanshi; Mills, Jason A; Carrico, Cheri S; Noon, Sarah; Herrera, Pamela S; Horsfield, Julia A; Bettale, Chiara; Morgan, Jeremy; Huisman, Sylvia A; Moss, Jo; McCleery, Joseph; Grados, Marco; Hansen, Blake D; Srivastava, Siddharth; Taylor-Snell, Emily; Kerr, Lynne M; Katz, Olivia; Calof, Anne L; Musio, Antonio; Egense, Alena; Haaland, Richard E

    2017-05-01

    Cornelia de Lange Syndrome (CdLS) is due to mutations in the genes for the structural and regulatory proteins that make up the cohesin complex, and is considered a cohesinopathy disorder or, more recently, a transcriptomopathy. New phenotypes have been recognized in this expanding field. There are multiple clinical issues facing individuals with all forms of CdLS, particularly in the neurodevelopmental system, but also gastrointestinal, cardiac, and musculoskeletal. Aspects of developmental and cell biology have found common endpoints in the biology of the cohesin complex, with improved understanding of the mechanisms, easier diagnostic tests, and the possibility of potential therapeutics, all major clinical implications for the individual with CdLS. The following abstracts are the presentations from the 7th Cornelia de Lange Syndrome Scientific and Educational Symposium, June 22-23, 2016, in Orlando, FL, in conjunction with the Cornelia de Lange Syndrome Foundation National Meeting. In addition to the scientific and clinical discussions, there were talks related to practical aspects of behavior including autism, transitions, communication, access to medical care, and databases. At the end of the symposium, a panel was held, which included several parents, affected individuals and genetic counselors, and discussed the greatest challenges in life and how this information can assist in guiding future research. The Research Committee of the CdLS Foundation organizes this meeting, reviews, and accepts abstracts, and subsequently disseminates the information to the families through members of the Clinical Advisory Board and publications. AMA CME credits were provided by Greater Baltimore Medical Center, Baltimore, MD. © 2017 Wiley Periodicals, Inc.

  5. Limnological evaluation of water in the Rio Grande and Taquacetuba branches of the Billings Complex (São Paulo, Brazil and management implications

    Directory of Open Access Journals (Sweden)

    Marcelo Pompêo

    2010-12-01

    Full Text Available The large population contingent and the precarious urban planning in the metropolitan region of São Paulo have resulted in uncontrolled growth in areas where springs exist, generating strong pressures on the reservoirs. Concomitantly, a lack of articulation between public and private policy has led to various socio-environmental conflicts in the Billings watershed. This spring, which is responsible for the direct and indirect supply of water to millions of people, represents an enormous challenge for water resource management. In this context, this study aimed to analyze the seasonal limnological conditions of the Billings Complex, in particular the Rio Grande and Taquacetuba branches, and discuss the implications for the management procedure applied in the branches. Physical (water temperature, pH, electrical conductivity, suspended material, organic and inorganic suspended material chemical (dissolved oxygen, total phosphorus and nitrogen, nitrate, nitrite, ammonium and inorganic phosphorus and biological (chlorophyll-a variables of the water were analyzed and the Trophic State Index was calculated. The results indicate a hypertrophic state in the Taquacetuba branch. The Rio Grande branch presented a mesotrophic state which is, however, artificially maintained due to copper sulfate and hydrogen peroxide treatments. The results are also discussed in light of CONAMA Resolution 357/2005. Levels of chlorophyll-a and total phosphorous in the Taquacetuba branch do not conform to the proposed class of use, class I. In this branch, monitoring must be intensified and measures adopted to reduce the level of nutrients in the main body of the Billings complex.

  6. Intraspecific Variation Patterns of the Caudal Complex in Extant and Fossil Teleosts, with Comments on Implications into Taxonomy and Systematics: a Case Study.

    Directory of Open Access Journals (Sweden)

    Maria Eduarda de Castro Leal

    2007-07-01

    Full Text Available Comparative morphology remains as afundamental support of the interrelationshiphypotheses of living and fossil fish taxa. Theconceptualization of the characters is only possibleafter the comparative analysis that shows themorphological variation of groups from differenttaxonomical rank. The intraspecific morphologicalvariation of a large number of teleostean speciesis relatively unknown. Osteological studies ofteninclude some few specimens minimizing thepossibility to recognize the intraspecific variation.This observation is also valid in the cases were theontogenetic changes are analyzed. The discoveryof such morphological variations requires the studyof a large sample size. The caudal skeleton is amajor anatomical complex and data source usedin the evaluation of teleostean interrelationships.However, the intraspecific variation of its elementshad been rarely investigated. Intraspecific variationobserved in extant taxa provides critical control forrecognition of intraspecific variation in fossil taxa,and integrated studies of fossil and living teleostsare required. Attempting to provide new data on thesubject, this study deals with intraspecific variationobserved in the caudal skeleton complex of twoteleost species: the extant Osteoglossum bicirrhosum(Osteoglossomorpha: Osteoglossidae from theAmazonian drainage, and the fossil Cladocyclusgardneri (Ichthyodectiformes from the LowerCretaceous of Araripe Basin, northeastern Brazil. Weanalyzed fifthy-three specimens of O. bicirrhosum(SL 37,4 mm to 580 mm and twenty-two specimensof C. gardneri (SL 70 mm to 260 mm, describing andquantifying the morphological variation. The caudalskeleton of O. bicirrhosum displays the highestdegrees of intraspecific variation in the patterns ofneural spines and hypurals associated to U2, andneural arches and spines counts for PU1, whereasC. gardneri presented a more conservative pattern.An overview of all the different patterns observedis given, and the implications

  7. Engaging complexity

    Directory of Open Access Journals (Sweden)

    Gys M. Loubser

    2014-01-01

    Full Text Available In this article, I discuss studies in complexity and its epistemological implications for systematic and practical theology. I argue that engagement with complexity does not necessarily assurea non-reductionist approach. However, if complexity is engaged transversally, it becomes possible to transcend reductionist approaches. Moreover, systematic and practical the ologians can draw on complexity in developing new ways of understanding and, therefore, new ways of describing the focus, epistemic scope and heuristic structures of systematic and practical theology. Firstly, Edgar Morin draws a distinction between restricted and general complexity based on the epistemology drawn upon in studies in complexity. Moving away from foundationalist approaches to epistemology, Morin argues for a paradigm of systems. Secondly,I discuss Kees van Kooten Niekerk�s distinction between epistemology, methodology andontology in studies in complexity and offer an example of a theological argument that drawson complexity. Thirdly, I argue for the importance of transversality in engaging complexity by drawing on the work of Wentzel van Huyssteen and Paul Cilliers. In conclusion, I argue that theologians have to be conscious of the epistemic foundations of each study in complexity, and these studies illuminate the heart of Reformed theology.Intradisciplinary and/or interdisciplinary implications: Therefore, this article has both intradisciplinary and interdisciplinary implications. When theologians engage studies incomplexity, the epistemological roots of these studies need to be considered seeing thatresearchers in complexity draw on different epistemologies. Drawing on transversality wouldenhance such considerations. Furthermore, Edgar Morin�s and Paul Cilliers� approach tocomplexity will inform practical and theoretical considerations in church polity and unity.

  8. Characterization and reactivity of the weakly bound complexes of the [H, N, S]{sup −} anionic system with astrophysical and biological implications

    Energy Technology Data Exchange (ETDEWEB)

    Trabelsi, T.; Ajili, Y.; Ben Yaghlane, S.; Jaidane, N.-E. [Laboratoire de Spectroscopie Atomique, Moléculaire et Applications–LSAMA, Université de Tunis El Manar, Tunis (Tunisia); Mogren Al-Mogren, M. [Chemistry Department, Faculty of Science, King Saud University, P.O. Box 2455, Riyadh 11451 (Saudi Arabia); Francisco, J. S. [Department of Chemistry and Department of Earth and Atmospheric Sciences, Purdue University, West Lafayette, Indiana 47906 (United States); Hochlaf, M., E-mail: hochlaf@univ-mlv.fr [Laboratoire Modélisation et Simulation Multi Echelle, Université Paris-Est, MSME UMR 8208 CNRS, 5 Blvd. Descartes, 77454 Marne-la-Vallée (France)

    2015-07-21

    We investigate the lowest electronic states of doublet and quartet spin multiplicity states of HNS{sup −} and HSN{sup −} together with their parent neutral triatomic molecules. Computations were performed using highly accurate ab initio methods with a large basis set. One-dimensional cuts of the full-dimensional potential energy surfaces (PESs) along the interatomic distances and bending angle are presented for each isomer. Results show that the ground anionic states are stable with respect to the electron detachment process and that the long range parts of the PESs correlating to the SH{sup −} + N, SN{sup −} + H, SN + H{sup −}, NH + S{sup −}, and NH{sup −} + S are bound. In addition, we predict the existence of long-lived weakly bound anionic complexes that can be formed after cold collisions between SN{sup −} and H or SH{sup −} and N. The implications for the reactivity of these species are discussed; specifically, it is shown that the reactions involving SH{sup −}, SN{sup −}, and NH{sup −} lead either to the formation of HNS{sup −} or HSN{sup −} in their electronic ground states or to autodetachment processes. Thus, providing an explanation for why the anions, SH{sup −}, SN{sup −}, and NH{sup −}, have limiting detectability in astrophysical media despite the observation of their corresponding neutral species. In a biological context, we suggest that HSN{sup −} and HNS{sup −} should be incorporated into H{sub 2}S-assisted heme-catalyzed reduction mechanism of nitrites in vivo.

  9. Modeling Np and Pu transport with a surface complexation model and spatially variant sorption capacities: Implications for reactive transport modeling and performance assessments of nuclear waste disposal sites

    Science.gov (United States)

    Glynn, P.D.

    2003-01-01

    One-dimensional (1D) geochemical transport modeling is used to demonstrate the effects of speciation and sorption reactions on the ground-water transport of Np and Pu, two redox-sensitive elements. Earlier 1D simulations (Reardon, 1981) considered the kinetically limited dissolution of calcite and its effect on ion-exchange reactions (involving 90Sr, Ca, Na, Mg and K), and documented the spatial variation of a 90Sr partition coefficient under both transient and steady-state chemical conditions. In contrast, the simulations presented here assume local equilibrium for all reactions, and consider sorption on constant potential, rather than constant charge, surfaces. Reardon's (1981) seminal findings on the spatial and temporal variability of partitioning (of 90Sr) are reexamined and found partially caused by his assumption of a kinetically limited reaction. In the present work, sorption is assumed the predominant retardation process controlling Pu and Np transport, and is simulated using a diffuse-double-layer-surface-complexation (DDLSC) model. Transport simulations consider the infiltration of Np- and Pu-contaminated waters into an initially uncontaminated environment, followed by the cleanup of the resultant contamination with uncontaminated water. Simulations are conducted using different spatial distributions of sorption capacities (with the same total potential sorption capacity, but with different variances and spatial correlation structures). Results obtained differ markedly from those that would be obtained in transport simulations using constant Kd, Langmuir or Freundlich sorption models. When possible, simulation results (breakthrough curves) are fitted to a constant K d advection-dispersion transport model and compared. Functional differences often are great enough that they prevent a meaningful fit of the simulation results with a constant K d (or even a Langmuir or Freundlich) model, even in the case of Np, a weakly sorbed radionuclide under the

  10. Evidence of interlipidic ion-pairing in anion-induced DNA release from cationic amphiphile-DNA complexes. Mechanistic implications in transfection.

    Science.gov (United States)

    Bhattacharya, S; Mandal, S S

    1998-05-26

    Complex formation of DNA with a number of cationic amphiphiles has been examined using fluorescence, gel electrophoresis, and chemical nuclease digestion. Here we have addressed the status of both DNA and lipid upon complexation with each other. DNA upon binding with cationic amphiphiles changes its structure in such a way that it loses the ability to intercalate and becomes resistant to nuclease digestion. Fluorescence anisotropy measurements due to 1, 6-diphenylhexatriene (DPH) doped in cationic liposomes demonstrated that upon complexation with DNA, the resulting complexes still retain lamellar organizations with modest enhancement in thermal stabilities. The lipid-DNA complexation is most effective only when the complexation was carried out at or around the phase transition temperatures of the cationic lipid employed in the complexation with DNA. The release of DNA from cationic lipid-DNA complexes could be induced by several anionic additives. Determination of fluorescence anisotropies (due to DPH) as a function of temperature clearly demonstrates that the addition of equivalent amounts of anionic amphiphile into cationic lipid-DNA complexes leads to the ion-pairing of the amphiphiles, the melting profiles of which are virtually the same as those obtained in the absence of DNA. In this process DNA gets released from its complexes with cationic lipids and regains its natural intercalation ability, movement, and staining ability on agarose gel and also the sensitivities toward nuclease digestion. This clearly suggests that combination of ion-pairing and hydrophobic interactions between cationic and anionic amphiphiles is stronger than the electrostatic forces involved in the cationic lipid-DNA complexation. It is further revealed that the DNA release by anions is most efficient from the cationic lipid-DNA complexes at or around the Tm of the cationic lipid used in DNA complexation. This explains why more effective DNA delivery is achieved with cationic lipids

  11. [Formation of a depside-caffeine complex during cold conservation of coffee leaf samples in a hydro-ethanolic medium. Methodologic implications for the extraction of depsides].

    Science.gov (United States)

    Colonna, J P

    1977-07-18

    The depsides present in coffee leaves are not apparent upon extraction with ethanol if the plant material has been fixed in boiling ethanol then maintained at - 25 degrees C. A complex formed with cafein prevents the extraction and this artefact from cold conservation concerns chlorogenic acid and its isomers. A treatment with chloroform can break the complex and allows the depsides to be dosed. The complex does not seem to exist in living tissues.

  12. Zircon SHRIMP geochronology of the Xinkailing-Kele complex in the northwestern Lesser Xing'an Range, and its geological implications

    Institute of Scientific and Technical Information of China (English)

    MIAO Laicheng; FAN Weiming; ZHANG Fuqing; LIU Dunyi; JIAN Ping; SHI Guanghai; TAO Hua; SHI Yuruo

    2004-01-01

    Located in the eastern portion of the Xing'an- Mongolian Orogenic Belt (XMOB), the Xinkailing-Kele complex has previously been considered to be Precambrian metamorphic rocks, mainly according to its relatively high metamorphic grade. Our filed observation, however, revealed that the complex is composed mainly of metamorphic rocks (Kele complex), tectono-schists ("Xinkailing Group"), and granitoids (Xinkailing granitic complex). Dating on these rocks using advanced SHRIMP zircon U-Pb technique indicates that: (1) Biotite-plagioclase gneiss from the Kele complex has a protolith age of 337±7 Ma (2σ) and a metamorphic age of 216(3 Ma (2σ); (2) the tectono-schist of the "Xinkailing Group" gave a magmatic age of 292±6 Ma (2σ), indicative of felsic volcanic protolith of the schist formed in Late Paleozoic time; and (3) the Menluhedingzi and Lengchuan granites of the Xinkailing granitic complex were emplaced at 167±4 (2σ) and 164±4 Ma (2σ), respectively. These results suggest that the Xinkailing-Kele complex is not Precambrian metamorphic rocks and the so-called Precambrian "Nenjiang Block" does essentially not exist. In combination with regional geological data, we propose that the Kele metamorphic complex is likely related to a collisional tectonism that took place in Triassic time, as indicted by its metamorphic age of 216(3 Ma. The Xinkailing granitic complex was emplaced along the collisional zone during Mid-Jurassic time, likely in a post-orogenic or anorogenic setting.

  13. The Complexities of Adolescent Dating and Sexual Relationships: Fluidity, Meaning(s), and Implications for Young Adults' Well-Being

    Science.gov (United States)

    Manning, Wendy D.; Longmore, Monica A.; Copp, Jennifer; Giordano, Peggy C.

    2014-01-01

    The complexity of adolescents' dating and sexual lives is not easily operationalized with simple indicators of dating or sexual activity. While building on prior work that emphasizes the "risky" nature of adolescents' intimate relationships, we assess whether a variety of indicators reflecting the complexity of…

  14. The Complexities of Adolescent Dating and Sexual Relationships: Fluidity, Meaning(s), and Implications for Young Adults' Well-Being

    Science.gov (United States)

    Manning, Wendy D.; Longmore, Monica A.; Copp, Jennifer; Giordano, Peggy C.

    2014-01-01

    The complexity of adolescents' dating and sexual lives is not easily operationalized with simple indicators of dating or sexual activity. While building on prior work that emphasizes the "risky" nature of adolescents' intimate relationships, we assess whether a variety of indicators reflecting the complexity of…

  15. Shallow sub-surface structure of the central volcanic complex of Tenerife, Canary Islands: implications for the evolution and the recent reactivation of the Las Canadas caldera

    Energy Technology Data Exchange (ETDEWEB)

    Gottsmann, J [Department of Earth Sciences, University of Bristol, Wills Memorial Building, Queens Road, Bristol BS8 1RJ (United Kingdom); Camacho, A G; Fernandez, J [Instituto de Astronomia y Geodesia (CSIC-UCM), Ciudad Universitaria, Pza. de Ciencias, 3, 28040 Madrid (Spain); MartI, J [Institute of Earth Sciences ' Jaume Almera' , CSIC, Lluis Sole SabarIs s/n, Barcelona 08028 (Spain); Wooller, L; Rymer, H [Department of Earth and Environmental Sciences, Open University, Walton Hall, Milton Keynes, MK7 6AA (United Kingdom); GarcIa, A [Department of Volcanology, Museo Nacional de Ciencias Naturales, CSIC, C/ Jose Gutierrez Abascal, 2, 28006 Madrid (Spain)], E-mail: j.gottsmann@bristol.ac.uk

    2008-10-01

    We present a new local Bouguer anomaly map of the Central Volcanic Complex (CVC) of Tenerife, Spain. The high-density core of the CVC and the pronounced gravity low centred in the Las Canadas caldera (LCC) in greater detail than previously available. Mathematical construction of a subsurface model from the local anomaly data, employing a 3-D inversion enables mapping of the shallow structure beneath the complex, giving unprecedented insights into the sub-surface architecture of the complex, and shedding light on its evolution.

  16. Assessing complexity of skin blood flow oscillations in response to locally applied heating and pressure in rats: Implications for pressure ulcer risk

    Science.gov (United States)

    Liao, Fuyuan; O'Brien, William D.; Jan, Yih-Kuen

    2013-10-01

    The objective of this study was to investigate the effects of local heating on the complexity of skin blood flow oscillations (BFO) under prolonged surface pressure in rats. Eleven Sprague-Dawley rats were studied: 7 rats underwent surface pressure with local heating (△t=10 °C) and 4 rats underwent pressure without heating. A pressure of 700 mmHg was applied to the right trochanter area of rats for 3 h. Skin blood flow was measured using laser Doppler flowmetry. The loading period was divided into nonoverlapping 30 min epochs. For each epoch, multifractal detrended fluctuation analysis (MDFA) was utilized to compute DFA coefficients and complexity of endothelial related metabolic, neurogenic, and myogenic frequencies of BFO. The results showed that under surface pressure, local heating led to a significant decrease in DFA coefficients of myogenic frequency during the initial epoch of loading period, a sustained decrease in complexity of myogenic frequency, and a significantly higher degree of complexity of metabolic frequency during the later phase of loading period. Surrogate tests showed that the reduction in complexity of myogenic frequency was associated with a loss of nonlinearity whereas increased complexity of metabolic frequency was associated with enhanced nonlinearity. Our results indicate that increased metabolic activity and decreased myogenic response due to local heating manifest themselves not only in magnitudes of metabolic and myogenic frequencies but also in their structural complexity. This study demonstrates the feasibility of using complexity analysis of BFO to monitor the ischemic status of weight-bearing skin and risk of pressure ulcers.

  17. Geochronological, geochemical, and Nd-Hf isotopic studies of the Qinling Complex, central China:Implications for the evolutionary history of the North Qinling Orogenic Belt

    Institute of Scientific and Technical Information of China (English)

    Chunrong Diwu; Yong Sun; Yan Zhao; BingXiang Liu; Shaocong Lai

    2014-01-01

    The Qinling Complex of central China is thought to be the oldest rock unit and the inner core of the North Qinling Orogenic Belt (NQOB). Therefore, the Qinling Complex is the key to understanding the pre-Paleozoic evolution of the NQOB. The complex, which consists of metagraywackes and marbles, un-derwent regional amphibolite-facies metamorphism. In this study, we constrained the formation age of the Qinling Complex to the period between the late Mesoproterozoic and the early Neoproterozoic (ca. 1062e962 Ma), rather than the Paleoproterozoic as previously thought. The LA-ICP-MS data show two major metamorphic ages (ca. 499 and ca. 420e400 Ma) for the Qinling Complex. The former age is consistent with the peak metamorphic age of the high- and ultra-high pressure (HP-UHP) rocks in the Qinling Complex, indicating that both the HP-UHP rocks and their country rocks experienced intensive regional metamorphism during the Ordovician. The latter age may constrain the time of partial melting in the NQOB between the late Silurian and early Devonian. The Qinling Complex is mostly affiliated with subductioneaccretion processes along an active continental margin, and should contain detritus deposited in a forearc basin. The available data indicate that the NQOB was an independent micro-continent at least prior to the Neoproterozoic, and included a portion of the Grenville orogenic belt during the period of 1.2e0.8 Ga. The NQOB has experienced a unique geological history, which is obviously different from that of the North China Craton (NCC) and the Yangtze Craton during the Precambrian. The Neoproterozoic granitoids that intruded the Qinling Complex can be interpreted as the products of assembly of the supercontinent Rodinia. The NQOB was separated from Rodinia at ca. 830e740 Ma. Subsequently, the NQOB moved closer to the northern margin of the NCC, and the initial accretion or collision with the NCC occurred from the late Cambrian to the early Ordovician.

  18. The orbital ground state of the azide-substrate complex of human heme oxygenase is an indicator of distal H-bonding: Implications for the enzyme mechanism‡

    Science.gov (United States)

    Ogura, Hiroshi; Evans, John P.; Peng, Dungeng; Satterlee, James D.; de Montellano, Paul R. Ortiz; Mar, Gerd N. La

    2009-01-01

    The active site electronic structure of the azide complex of substrate-bound human heme oxygenase-1, (hHO) has been investigated by 1H NMR spectroscopy to shed light on the orbital/spin ground state as an indicator of the unique distal pocket environment of the enzyme. 2D 1H NMR assignments of the substrate and substrate-contact residue signals reveal a pattern of substrate methyl contact shifts, that places the lone iron π-spin in the dxz orbital, rather than the dyz orbital found in the cyanide complex. Comparison of iron spin relaxivity, magnetic anisotropy and magnetic susceptibilities argues for a low-spin, (dxy)2(dyz,dxz)3, ground state in both azide and cyanide complexes. The switch from singly-occupied dyz for the cyanide to dxz for the azide complex of hHO is shown to be consistent with the orbital hole determined by the azide π-plane in the latter complex, which is ∼90° in-plane rotated from that of the imidazole π-plane. The induction of the altered orbital ground state in the azide relative to the cyanide hHO complex, as well as the mean low-field bias of methyl hyperfine shifts and their paramagnetic relaxivity relative to those in globins, indicate that azide exerts a stronger ligand field in hHO than in the globins, or that the distal H-bonding to azide is weaker in hHO than in globins. The Asp140 → Ala hHO mutant that abolishes activity retains the unusual WT azide complex spin/orbital ground state. The relevance of our findings for other HO complexes and the HO mechanism is discussed. PMID:19243105

  19. The orbital ground state of the azide-substrate complex of human heme oxygenase is an indicator of distal H-bonding: implications for the enzyme mechanism.

    Science.gov (United States)

    Ogura, Hiroshi; Evans, John P; Peng, Dungeng; Satterlee, James D; Ortiz de Montellano, Paul R; La Mar, Gerd N

    2009-04-14

    The active site electronic structure of the azide complex of substrate-bound human heme oxygenase 1 (hHO) has been investigated by (1)H NMR spectroscopy to shed light on the orbital/spin ground state as an indicator of the unique distal pocket environment of the enzyme. Two-dimensional (1)H NMR assignments of the substrate and substrate-contact residue signals reveal a pattern of substrate methyl contact shifts that places the lone iron pi-spin in the d(xz) orbital, rather than the d(yz) orbital found in the cyanide complex. Comparison of iron spin relaxivity, magnetic anisotropy, and magnetic susceptibilities argues for a low-spin, (d(xy))(2)(d(yz),d(xz))(3), ground state in both azide and cyanide complexes. The switch from singly occupied d(yz) for the cyanide to d(xz) for the azide complex of hHO is shown to be consistent with the orbital hole determined by the azide pi-plane in the latter complex, which is approximately 90 degrees in-plane rotated from that of the imidazole pi-plane. The induction of the altered orbital ground state in the azide relative to the cyanide hHO complex, as well as the mean low-field bias of methyl hyperfine shifts and their paramagnetic relaxivity relative to those in globins, indicates that azide exerts a stronger ligand field in hHO than in the globins, or that the distal H-bonding to azide is weaker in hHO than in globins. The Asp140 --> Ala hHO mutant that abolishes activity retains the unusual WT azide complex spin/orbital ground state. The relevance of our findings for other HO complexes and the HO mechanism is discussed.

  20. TOWARD THE ASTRONOMICAL DETECTION OF THE PROTON-BOUND COMPLEX NN–HCO{sup +}: IMPLICATIONS FOR THE SPECTRA OF PROTOPLANETARY DISKS

    Energy Technology Data Exchange (ETDEWEB)

    Fortenberry, Ryan C. [Department of Chemistry, Georgia Southern University, Statesboro, GA 30460 (United States); Francisco, Joseph S. [Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588 (United States); Lee, Timothy J., E-mail: rfortenberry@georgiasouthern.edu [NASA Ames Research Center, Moffett Field, CA 94035-1000 (United States)

    2016-03-10

    Proton-bound complexes have been hypothesized as further means of detecting the nitrogen molecule in the interstellar medium. The study of such complexes has largely been hindered by the necessary experimental setups utilized or by their difficulty in producing and/or analyzing computed potential energy surfaces. Here the NN–HCO{sup +} proton-bound complex is analyzed via quartic force fields (QFFs). While QFFs have produced meaningful results for other proton-bound complexes, they have been hindered by double-well potentials or flat potential surfaces. NN–HCO{sup +} is not affected by these constraints. This strongly dipolar (3.63 D) molecule can be observed rotationally unlike the more heavily analyzed OCHCO{sup +} and NNHNN{sup +} proton-bound complexes. Additionally, the large absorption feature corresponding to the proton motion, a hallmark of proton-bound complexes, is much higher in frequency at 2547.1 cm{sup −1}, changing the range of experimental observation for the bright frequency. NN–HCO{sup +} is hypothesized to be present in protoplanetary disks where N{sub 2}H{sup +} and CO are known. As such, it may help to influence the nitrogen budget of planet-forming astronomical regions.

  1. Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution

    DEFF Research Database (Denmark)

    Greber, Basil J; Boehringer, Daniel; Godinic-Mikulcic, Vlatka

    2012-01-01

    Translation of mRNA into proteins by the ribosome is universally conserved in all cellular life. The composition and complexity of the translation machinery differ markedly between the three domains of life. Organisms from the domain Archaea show an intermediate level of complexity, sharing several...... additional components of the translation machinery with eukaryotes that are absent in bacteria. One of these translation factors is initiation factor 6 (IF6), which associates with the large ribosomal subunit. We have reconstructed the 50S ribosomal subunit from the archaeon Methanothermobacter...... thermautotrophicus in complex with archaeal IF6 at 6.6 Å resolution using cryo-electron microscopy (EM). The structure provides detailed architectural insights into the 50S ribosomal subunit from a methanogenic archaeon through identification of the rRNA expansion segments and ribosomal proteins that are shared...

  2. P- T- t constraints on the development of the Doi Inthanon metamorphic core complex domain and implications for the evolution of the western gneiss belt, northern Thailand

    Science.gov (United States)

    Macdonald, A. S.; Barr, S. M.; Miller, B. V.; Reynolds, P. H.; Rhodes, B. P.; Yokart, B.

    2010-01-01

    The western gneiss belt in northern Thailand is exposed within two overlapping Cenozoic structural domains: the extensional Doi Inthanon metamorphic core complex domain located west of the Chiang Mai basin, and the Mae Ping strike-slip fault domain located west of the Tak batholith. New P- T estimates and U-Pb and 40Ar/ 39Ar age determinations from the Doi Inthanon domain show that the gneiss there records a complex multi-stage history that can be represented by a clockwise P- T- t path. U-Pb zircon and titanite dating of mylonitic calc-silicate gneiss from the Mae Wang area of the complex indicates that the paragneissic sequence experienced high-grade, medium-pressure metamorphism (M1) in the Late Triassic - Early Jurassic (ca. 210 Ma), in good agreement with previously determined zircon ages from the underlying core orthogneiss exposed on Doi Inthanon. Late Cretaceous monazite ages of 84 and 72 Ma reported previously from the core orthogneiss are attributed to a thermal overprint (M2) to upper-amphibolite facies in the sillimanite field. U-Pb zircon and monazite dating of granitic mylonite from the Doi Suthep area of the complex provides an upper age limit of 40 Ma (Late Eocene) for the early stage(s) of development of the actual core complex, by initially ductile, low-angle extensional shearing under lower amphibolite-facies conditions (M3), accompanied by near-isothermal diapiric rise and decompression melting. 40Ar/ 39Ar laserprobe dating of muscovite from both Doi Suthep and Doi Inthanon provided Miocene ages of ca. 26-15 Ma, representing cooling through the ca. 350 °C isotherm and marking late-stage development of the core complex by detachment faulting of the cover rocks and isostatic uplift of the sheared core zone and mantling gneisses in the footwall. Similarities in the thermochronology of high-grade gneisses exposed in the core complex and shear zone domains in the western gneiss belt of northern Thailand (and also in northern Vietnam, Laos, Yunnan

  3. Synthesis, Characterization of Heterodinuclear Co-Cu Complex and Its Electrocatalytic Activity towards 02 Reduction: Implications for Cytochrome c Oxidase Active Site Modeling

    Institute of Scientific and Technical Information of China (English)

    卢卫兵; 汪存信; 周晓海; 任建国

    2003-01-01

    A new dinudeating ligand consisting of a tetraphanylporphyrin derivative covalently linked with tris(2-benzimidazylmethyl)-amine and its homodinudear Co-Co and heterodinnelear Co-Cu complexes were synthesized and spectroscopically character-ized. The heterobimetallie cobalt-copper complex bearing three benzimidazole ligands for copper, as cytochrome c oxidase ac-tive site model, was applied to the surface of glassy carbon elec-trode to show electrocatalytie activity for O2 reduction in aque-ous solution at an addity level dose to physiological pH value.The kinetic parameters of this electrocatalytic process were ob-tained.

  4. The Transcription Bubble of the RNA Polymerase-Promoter Open Complex Exhibits Conformational Heterogeneity and Millisecond-Scale Dynamics : Implications for Transcription Start-Site Selection

    NARCIS (Netherlands)

    Robb, Nicole C.; Cordes, Thorben; Hwang, Ling Chin; Gryte, Kristofer; Duchi, Diego; Craggs, Timothy D.; Santoso, Yusdi; Weiss, Shimon; Ebright, Richard H.; Kapanidis, Achillefs N.

    2013-01-01

    Bacterial transcription is initiated after RNA polymerase (RNAP) binds to promoter DNA, melts similar to 14 bp around the transcription start site and forms a single-stranded "transcription bubble" within a catalytically active RNAP-DNA open complex (RPo). There is significant flexibility in the tra

  5. Unanticipated Mycobacterium tuberculosis complex culture inhibition by immune modulators, immune suppressants, a growth enhancer, and vitamins A and D: clinical implications

    Directory of Open Access Journals (Sweden)

    Robert J. Greenstein

    2014-09-01

    Conclusions: We conclude that, at a minimum, studies with virulent M. tuberculosis are indicated with the agents mentioned above, as well as with the thioamide 5-propothiouricil, which has previously been shown to inhibit the M. tuberculosis complex in culture. Our data additionally emphasize the importance of vitamins A and D in treating mycobacterial diseases.

  6. Strong ionic interactions in noncovalent complexes between poly(ethylene imine), a cationic electrolyte, and Cibacron Blue, a nucleotide mimic--implications for oligonucleotide vectors.

    Science.gov (United States)

    Çelikbıçak, Ömür; Salih, Bekir; Wesdemiotis, Chrys

    2014-07-01

    Cationic polymers can bind DNA to form polyplexes, which are noncovalent complexes used for gene delivery into the targeted cells. For more insight on such biologically relevant systems, the noncovalent complexes between the cationic polymer poly(ethylene imine) (PEI) and the nucleotide mimicking dye Cibacron Blue F3G-A (CB) were investigated using mass spectrometry methods. Two PEIs of low molecular weight were utilized (Mn  ≈ 423 and 600 Da). The different types of CB anions produced by Na(+)/H(+) exchanges on the three sulfonic acid groups of CB and their dehydrated counterparts were responsible for complex formation with PEI. The CB anions underwent noncovalent complex formation with protonated, but not with sodiated PEI. A higher proportion of cyclic oligomers were detected in PEI423 than PEI600, but both architectures formed association products with CB. Tandem mass spectrometry studies revealed a significantly stronger noncovalent interaction between PEI and dehydrated CB than between PEI and intact CB. Copyright © 2014 John Wiley & Sons, Ltd.

  7. El complejo amigdalino humano y su implicación en los trastornos psiquiátricos The amygdaloid complex and its implication in psychiatric disorders

    Directory of Open Access Journals (Sweden)

    M. T. Ledo-Varela

    2007-04-01

    Full Text Available El complejo amigdalino es un conjunto de núcleos que se localizan en la profundidad del lóbulo temporal, y que guardan estrecha relación con el sistema límbico. Su alteración se ha asociado a un gran número de procesos psiquiátricos. En este artículo se pretende hacer una revisión de lo publicado en referencia a la implicación amigdalina en trastornos psiquiátricos comunes. En ellos se observa un complejo amigdalino alterado, siendo su máxima expresión el síndrome de Klüver-Bucy. En pacientes esquizofrénicos se ha observado una reducción del volumen amigdalino, bilateral en varones y unilateral en mujeres. Esto sugiere que las alteraciones morfométricas del complejo amigdalino están más extendidas en varones esquizofrénicos. El complejo amigdalino está aumentado en niños autistas, no siendo así en adolescentes, donde se iguala al volumen de cualquier adolescente o adulto sano. Sin embargo, estudios neuroanatómicos han demostrado patología microscópica. En los pacientes con trastornos en el estado de ánimo, se observa una cierta tendencia a presentar un complejo amigdalino izquierdo de menor volumen. El volumen amigdalino de los grupos con demencia frontotemporal y enfermedad de Alzheimer era diferente a los del grupo de control, y se ha visto una predisposición al incremento de la atrofia amigdalina. Se puede afirmar que el complejo amigdalino está implicado en numerosos procesos psiquiátricos, tanto por daño estructural de dicho complejo como por daño funcional. Sin embargo, hacen falta más estudios para delimitar la influencia real del complejo amigdalino en dichos trastornos.The amygdaloid complex is a group of nuclei located deep in the temporal lobe and closely involved in the limbic system. Its alteration has been associated with some psychiatric processes. In this article, an overall review was made of the published data concerning the amygdaloid complex in the most common psychiatric diseases. A damaged

  8. Petrology, geochemistry and zircon U-Pb geochronology of a layered igneous complex from Akarui Point in the Lützow-Holm Complex, East Antarctica: Implications for Antarctica-Sri Lanka correlation

    Science.gov (United States)

    Kazami, Sou; Tsunogae, Toshiaki; Santosh, M.; Tsutsumi, Yukiyasu; Takamura, Yusuke

    2016-11-01

    The Lützow-Holm Complex (LHC) of East Antarctica forms part of a complex subduction-collision orogen related to the amalgamation of the Neoproterozoic supercontinent Gondwana. Here we report new petrological, geochemical, and geochronological data from a metamorphosed and disrupted layered igneous complex from Akarui Point in the LHC which provide new insights into the evolution of the complex. The complex is composed of mafic orthogneiss (edenite/pargasite + plagioclase ± clinopyroxene ± orthopyroxene ± spinel ± sapphirine ± K-feldspar), meta-ultramafic rock (pargasite + olivine + spinel + orthopyroxene), and felsic orthogneiss (plagioclase + quartz + pargasite + biotite ± garnet). The rocks show obvious compositional layering reflecting the chemical variation possibly through magmatic differentiation. The metamorphic conditions of the rocks were estimated using hornblende-plagioclase geothermometry which yielded temperatures of 720-840 °C. The geochemical data of the orthogneisses indicate fractional crystallization possibly related to differentiation within a magma chamber. Most of the mafic-ultramafic samples show enrichment of LILE, negative Nb, Ta, P and Ti anomalies, and constant HFSE contents in primitive-mantle normalized trace element plots suggesting volcanic arc affinity probably related to subduction. The enrichment of LREE and flat HREE patterns in chondrite-normalized REE plot, with the Nb-Zr-Y, Y-La-Nb, and Th/Yb-Nb/Yb plots also suggest volcanic arc affinity. The felsic orthogneiss plotted on Nb/Zr-Zr diagram (low Nb/Zr ratio) and spider diagrams (enrichment of LILE, negative Nb, Ta, P and Ti anomalies) also show magmatic arc origin. The morphology, internal structure, and high Th/U ratio of zircon grains in felsic orthogneiss are consistent with magmatic origin for most of these grains. Zircon U-Pb analyses suggest Early Neoproterozoic (847.4 ± 8.0 Ma) magmatism and protolith formation. Some older grains (1026-882 Ma) are regarded as

  9. Eruption processes and deposit characteristics at the monogenetic Mt. Gambier Volcanic Complex, SE Australia: implications for alternating magmatic and phreatomagmatic activity

    Science.gov (United States)

    van Otterloo, Jozua; Cas, Raymond A. F.; Sheard, Malcolm J.

    2013-08-01

    The ˜5 ka Mt. Gambier Volcanic Complex in the Newer Volcanics Province, Australia is an extremely complex monogenetic, volcanic system that preserves at least 14 eruption points aligned along a fissure system. The complex stratigraphy can be subdivided into six main facies that record alternations between magmatic and phreatomagmatic eruption styles in a random manner. The facies are (1) coherent to vesicular fragmental alkali basalt (effusive/Hawaiian spatter and lava flows); (2) massive scoriaceous fine lapilli with coarse ash (Strombolian fallout); (3) bedded scoriaceous fine lapilli tuff (violent Strombolian fallout); (4) thin-medium bedded, undulating very fine lapilli in coarse ash (dry phreatomagmatic surge-modified fallout); (5) palagonite-altered, cross-bedded, medium lapilli to fine ash (wet phreatomagmatic base surges); and (6) massive, palagonite-altered, very poorly sorted tuff breccia and lapilli tuff (phreato-Vulcanian pyroclastic flows). Since most deposits are lithified, to quantify the grain size distributions (GSDs), image analysis was performed. The facies are distinct based on their GSDs and the fine ash to coarse+fine ash ratios. These provide insights into the fragmentation intensities and water-magma interaction efficiencies for each facies. The eruption chronology indicates a random spatial and temporal sequence of occurrence of eruption styles, except for a "magmatic horizon" of effusive activity occurring at both ends of the volcanic complex simultaneously. The eruption foci are located along NW-SE trending lineaments, indicating that the complex was fed by multiple dykes following the subsurface structures related to the Tartwaup Fault System. Possible factors causing vent migration along these dykes and changes in eruption styles include differences in magma ascent rates, viscosity, crystallinity, degassing and magma discharge rate, as well as hydrological parameters.

  10. Solution NMR characterization of magnetic/electronic properties of azide and cyanide-inhibited substrate complexes of human heme oxygenase: implications for steric ligand tilt.

    Science.gov (United States)

    Peng, Dungeng; Ogura, Hiroshi; Ma, Li-Hua; Evans, John P; de Montellano, Paul R Ortiz; La Mar, Gerd N

    2013-04-01

    Solution 2D (1)H NMR was carried out on the azide-ligated substrate complex of human heme oxygenase, hHO, to provide information on the active site molecular structure, chromophore electronic/magnetic properties, and the distal H-bond network linked to the exogenous ligand by catalytically relevant oriented water molecules. While 2D NMR exhibited very similar patterns of two-dimensional nuclear Overhauser spectroscopy cross peaks of residues with substrate and among residues as the previously characterized cyanide complex, significant, broadly distributed chemical shift differences were observed for both labile and non-labile protons. The anisotropy and orientation of the paramagnetic susceptibility tensor, χ, were determined for both the azide and cyanide complexes. The most significant difference observed is the tilt of the major magnetic axes from the heme normal, which is only half as large for the azide than cyanide ligand, with each ligand tilted toward the catalytically cleaved α-meso position. The difference in chemical shifts is quantitatively correlated with differences in dipolar shifts in the respective complexes for all but the distal helix. The necessity of considering dipolar shifts, and hence determination of the orientation/anisotropy of χ, in comparing chemical shifts involving paramagnetic complexes, is emphasized. The analysis shows that the H-bond network cannot detect significant differences in H-bond acceptor properties of cyanide versus azide ligands. Lastly, significant retardation of distal helix labile proton exchange upon replacing cyanide with azide indicates that the dynamic stability of the distal helix is increased upon decreasing the steric interaction of the ligand with the distal helix. Copyright © 2013. Published by Elsevier Inc.

  11. Unrecognized hospital trauma as a source of complex psychiatric symptoms: a systematic case study with implications for children's rights and evidence-based practice.

    Science.gov (United States)

    Raby, Carly; Edwards, David

    2011-09-01

    This article describes the psychological assessment and treatment of Paul (12). For several years, he had received numerous diagnoses from a range of specialists and been unsuccessfully treated for epilepsy and obsessive-compulsive disorder. Treatment was based on a formulation-driven transdiagnostic approach. Soon it was clear that the correct diagnosis was posttraumatic stress disorder (PTSD) precipitated by an event in hospital when Paul was 6. Two sessions of Children's Accelerated Trauma Treatment (CATT) led to rapid resolution of the main symptoms and gains were consolidated and maintained in further treatment and follow-up sessions. The case material is used to examine why the correct case formulation had been missed, evidence for the efficacy of CATT, and implications for evidence-based practice and children's rights.

  12. Light-harvesting antenna complexes in the moss Physcomitrella patens: implications for the evolutionary transition from green algae to land plants.

    Science.gov (United States)

    Iwai, Masakazu; Yokono, Makio

    2017-06-01

    Plants have successfully adapted to a vast range of terrestrial environments during their evolution. To elucidate the evolutionary transition of light-harvesting antenna proteins from green algae to land plants, the moss Physcomitrella patens is ideally placed basally among land plants. Compared to the genomes of green algae and land plants, the P. patens genome codes for more diverse and redundant light-harvesting antenna proteins. It also encodes Lhcb9, which has characteristics not found in other light-harvesting antenna proteins. The unique complement of light-harvesting antenna proteins in P. patens appears to facilitate protein interactions that include those lost in both green algae and land plants with regard to stromal electron transport pathways and photoprotection mechanisms. This review will highlight unique characteristics of the P. patens light-harvesting antenna system and the resulting implications about the evolutionary transition during plant terrestrialization. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Encapsulation of ferro- and ferricyanide complexes inside ZSM-5 zeolite synthesized from rice straw: Implications for synthesis of Prussian blue pigment

    Energy Technology Data Exchange (ETDEWEB)

    Ali, Ibraheem O.; Salama, Tarek M., E-mail: tm_salama@yahoo.com; Thabet, Mohamed S.; El-Nasser, Karam S.; Hassan, Ali M.

    2013-06-15

    Encapsulation of [Fe(CN){sub 6}]{sup 4−} and [Fe(CN){sub 6}]{sup 3−} complexes in the intracrystalline pores of ZSM-5 zeolite, Fe{sup II}L/Z and Fe{sup III}L/Z respectively, by the zeolite synthesis method was reported. The modified zeolites were characterized by powder XRD, FT-IR and UV–vis spectroscopy. The nitrogen adsorption isotherms allow for the evaluation of pore structure of the complex-modified zeolites, whereas the thermal analysis (TGA/DTA) measurements provide insight into the decomposition products of the immobilized complexes. The modified zeolites exhibited smaller pore volumes and surface areas as compared with those of unpromoted ZSM-5, suggesting the inclusion of iron cyanides inside the interconnecting channels of ZSM-5. While the ferricyanide complex enhanced the formation of highly crystalline zeolite, the ferrocyanide one resulted in a lesser effect. The electronic spectra of the colloidal species developed when Fe{sup III}L/Z brought in contact with an aqueous solution of [Fe(CN){sub 6}]{sup 3−} exhibit absorptions attributed to CN{sup −} → iron charge-transfer. New bands at 294 and 319 nm due to d–d transitions of Fe{sup III} tetrahedral monomeric moieties were emitted concurrently under successive adsorption of [Fe(CN){sub 6}]{sub aq}{sup 3−} over Fe{sup III}L/Z, along with a broad band at 555 nm assigned to polymeric [Fe{sup II}–C–N–Fe{sup III}] of Prussian blue (PB). The FT-IR spectra of Fe{sup III/II}L/Z devoted to the adsorption of an aqueous solution of [Fe(CN){sub 6}]{sup 3−} showed a band at 2092 cm{sup −1} assigned to the C–N stretch in the Fe{sup II}–CN–Fe{sup III} linkages. The vibrations attributable to Fe–O–Si bonding along with hydrocarbon and nitroprusside appeared only in the spectrum of Fe{sup III}L/Z, thus was found to be strong evidence for the mutual interaction between [Fe(CN){sub 6}]{sup 3−} and the latter sample. - Highlights: • We synthesized ferrous and ferric cyanide

  14. Visual Complexity: A Review

    Science.gov (United States)

    Donderi, Don C.

    2006-01-01

    The idea of visual complexity, the history of its measurement, and its implications for behavior are reviewed, starting with structuralism and Gestalt psychology at the beginning of the 20th century and ending with visual complexity theory, perceptual learning theory, and neural circuit theory at the beginning of the 21st. Evidence is drawn from…

  15. Introduction of Peripheral Carboxylates to Decrease the Charge on Tm(3+) DOTAM-Alkyl Complexes: Implications for Detection Sensitivity and in Vivo Toxicity of PARACEST MRI Contrast Agents.

    Science.gov (United States)

    Suchý, Mojmír; Milne, Mark; Elmehriki, Adam A H; McVicar, Nevin; Li, Alex X; Bartha, Robert; Hudson, Robert H E

    2015-08-27

    A series of structurally modified Tm(3+) DOTAM-alkyl complexes as potential PARACEST MRI contrast agents has been synthesized with the aim to decrease the overall positive charge associated with these molecules and increase their biocompatibility. Two types of structural modification have been performed, an introduction of terminal carboxylate arms to the alkyl side chains and a conjugation of one of the alkyl side chains with aspartic acid. Detailed evaluation of the magnetic resonance imaging chemical exchange contrast associated with the structurally modified contrast agents has been performed. In contrast to the acutely toxic Tm(3+) DOTAM-alkyl complexes, the structurally modified compounds were found to be tolerated well during in vivo MRI studies in mice; however, only the aspartic acid modified chelates produced an amide proton-based PARACEST signal.

  16. Millimeter Wave Spectrum of the Weakly Bound Complex CH2═CHCN·H2O: Structure, Dynamics, and Implications for Astronomical Search.

    Science.gov (United States)

    Calabrese, Camilla; Vigorito, Annalisa; Maris, Assimo; Mariotti, Sergio; Fathi, Pantea; Geppert, Wolf D; Melandri, Sonia

    2015-12-03

    The weakly bound 1:1 complex between acrylonitrile (CH2═CHCN) and water has been characterized spectroscopically in the millimeter wave range (59.6-74.4 GHz) using a Free Jet Absorption Millimeter Wave spectrometer. Precise values of the rotational and quartic centrifugal distortion constants have been obtained from the measured frequencies of the normal and isotopically substituted water moiety (DOH, DOD, H(18)OH). Structural parameters have been estimated from the rotational constants and their differences among isotopologues: the complex has a planar structure with the two subunits held together by a O-H···N (2.331(3) Å) and a C-H···O (2.508(4) Å) interaction. The ab initio intermolecular binding energy, obtained at the counterpoise corrected MP2/aug-cc-pVTZ level of calculation, is De = 24.4 kJ mol(-1).

  17. Iron and zinc complexation in wild-type and ferritin-expressing wheat grain: implications for mineral transport into developing grain

    DEFF Research Database (Denmark)

    Neal, Andrew L; Geraki, Kalotina; Borg, Søren

    2013-01-01

    We have used synchrotron-based X-ray fluorescence and absorption techniques to establish both metal distribution and complexation in mature wheat grains. In planta, extended X-ray absorption fine structure (EXAFS) spectroscopy reveals iron phytate and zinc phytate structures in aleurone cells...... of ferritin-expressing grains is quite different from that in wild-type grain. This may explain why the raised levels of minerals transported to the developing grain accumulate within the crease region of the transgenic grain....

  18. Caltepec fault zone: An Early Permian dextral transpressional boundary between the Proterozoic Oaxacan and Paleozoic Acatlán complexes, southern Mexico, and regional tectonic implications

    Science.gov (United States)

    Elías-Herrera, Mariano; Ortega-Gutiérrez, Fernando

    2002-06-01

    The tectonic boundary between the Grenville-age Oaxacan and Paleozoic Acatlán crystalline complexes in southern Mexico, named the Caltepec fault zone (CFZ), is characterized for the first time as a dextral transpressional, NNW trending and ENE dipping ductile fault zone of Early Permian age. The complexes are welded by a syntectonic magmatic epidote-bearing granite along the entire length of the CFZ. From east to west, the 2-6 km wide CFZ consists of disrupted and retrograded banded gneisses of the Oaxacan complex, quartz-feldspar mylonite, and the syntectonic magmatic epidote-bearing Cozahuico granite (CZG) with huge xenoliths (up to several kilometers long and up to 600 m wide) of the Proterozoic gneisses, thrust westward over metasedimentary tectonites of the Acatlán complex. The CZG shows magmatic fabrics that represent a transition to solid-state deformation characterized by subvertical foliation, subhorizontal NNE and SSE dipping mineral stretching lineation and dextral kinematics. The megaxenoliths underwent partial melting developing banded migmatites with layers of epidote-bearing granitic neosome. The parallelism of fabrics in these anatexitic rocks and in the enclosing deformed granite suggests that ductile deformation, migmatization of xenolithic gneisses, and granite emplacement along the CFZ were coeval. The neosome yielded a U-Pb zircon concordant age of 275.6 +/- 1 Ma probably dating the peak of the tectonothermal event. We interpret the CFZ as a major terrane boundary accommodating transpressional interaction between the Acatlán and Oaxaquia blocks, which were amalgamated in an oblique convergent setting by Early Permian time, as the leading edge of Gondwana impinged onto the southern margin of Laurentia along the Marathon-Ouachita suture to form Pangea.

  19. Determination of thermodynamic parameters for complexation of calcium and magnesium with chondroitin sulfate isomers using isothermal titration calorimetry: Implications for calcium kidney-stone research

    Science.gov (United States)

    Rodgers, Allen L.; Jackson, Graham E.

    2017-04-01

    Chondroitin sulfate (CS) occurs in human urine. It has several potential binding sites for calcium and as such may play an inhibitory role in calcium oxalate and calcium phosphate (kidney stone disease by reducing the supersaturation (SS) and crystallization of these salts. Urinary magnesium is also a role player in determining speciation in stone forming processes. This study was undertaken to determine the thermodynamic parameters for binding of the disaccharide unit of two different CS isomers with calcium and magnesium. These included the binding constant K. Experiments were performed using an isothermal titration calorimeter (ITC) at 3 different pH levels in the physiological range in human urine. Data showed that interactions between the CS isomers and calcium and magnesium occur via one binding site, thought to be sulfate, and that log K values are 1.17-1.93 and 1.77-1.80 for these two metals respectively. Binding was significantly stronger in Mg-CS than in Ca-CS complexes and was found to be dependent on pH in the latter but not in the former. Furthermore, binding in Ca-CS complexes was dependent on the location of the sulfate binding site. This was not the case in the Mg-CS complexes. Interactions were shown to be entropy driven and enthalpy unfavourable. These findings can be used in computational modeling studies to predict the effects of the calcium and magnesium CS complexes on the speciation of calcium and the SS of calcium salts in real urine samples.

  20. Compositional variation in apatite, phlogopite and other accessory minerals of the ultramafic Delitzsch complex, Germany: implication for cooling history of carbonatites

    OpenAIRE

    Seifert, W.; Horst Kämpf; J. Wasternack;  ,

    2001-01-01

    A representative suite of samples from the ultramafic lamprophyre–carbonatite (UML–CR) complex of Delitzsch, Germany, shows significant variations in mineral composition and geothermobarometry. Petrographically distinct carbonatites of intrusive dolomitic and subvolcanic dolomitic and subvolcanic calcitic types clearly show marked compositional differences in such minerals as apatite, phlogopite and pyrochlore. Increasing concentrations are established for S, Cl, Si in apatite, and Ti, Al, Cr...

  1. Recognition of membrane-bound fusion-peptide/MPER complexes by the HIV-1 neutralizing 2F5 antibody: implications for anti-2F5 immunogenicity.

    Directory of Open Access Journals (Sweden)

    Nerea Huarte

    Full Text Available The membrane proximal external region (MPER of the fusogenic HIV-1 glycoprotein-41 harbors the epitope sequence recognized by 2F5, a broadly neutralizing antibody isolated from an infected individual. Structural mimicry of the conserved MPER 2F5 epitope constitutes a pursued goal in the field of anti-HIV vaccine development. It has been proposed that 2F5 epitope folding into its native state is attained in the vicinity of the membrane interface and might involve interactions with other viral structures. Here we present results indicating that oligomeric complexes established between MPER and the conserved amino-terminal fusion peptide (FP can partition into lipid vesicles and be specifically bound by the 2F5 antibody at their surfaces. Cryo-transmission electron microscopy of liposomes doped with MPER:FP peptide mixtures provided the structural grounds for complex recognition by antibody at lipid bilayer surfaces. Supporting the immunogenicity of the membrane-bound complex, these MPER:FP peptide-vesicle formulations could trigger cross-reactive anti-MPER antibodies in rabbits. Thus, our observations suggest that contacts with N-terminal regions of gp41 may stabilize the 2F5 epitope as a membrane-surface antigen.

  2. High-Resolution Mn EXAFS of the Oxygen-Evolving Complex inPhotosystem II: Structural Implications for the Mn4Ca Cluster

    Energy Technology Data Exchange (ETDEWEB)

    Yano, Junko; Pushkar, Yulia; Glatzel, Pieter; Lewis, Azul; Sauer,Kenneth; Messinger, Johannes; Bergmann, Uwe; Yachandra, Vittal

    2005-09-06

    The biological generation of oxygen by the oxygen-evolving complex in photosystem II (PS II) is one of natures most important reactions. The recent X-ray crystal structures, while limited by resolutions of 3.2 to 3.5 A, have located the electron density associated with the Mn4Ca complex within the multi-protein PS II complex. Detailed structures critically depend on input from spectroscopic techniques such as EXAFS and EPR/ENDOR, as the XRD resolution does not allow for accurate determination of the position of Mn/Ca or the bridging and terminal ligand atoms. The number and distances of Mn-Mn/Ca/ligand interactions determined from EXAFS provide important constraints for the structure of the Mn cluster. Here we present data from a high-resolution EXAFS method using a novel multi-crystal monochromator that show three short Mn-Mn distances between 2.7 and 2.8 A and hence the presence of three di-mu-oxobridged units in the Mn4Ca cluster. This result imposes clear limitations on the proposed structures based on spectroscopic and diffraction data and provides input for refining such structures.

  3. RNA:DNA complex formation upon transcription of immunoglobulin switch regions: implications for the mechanism and regulation of class switch recombination.

    Science.gov (United States)

    Daniels, G A; Lieber, M R

    1995-01-01

    Central the regulation and mechanism of class switch recombination is the understanding of the relationship between transcription and DNA recombination. We demonstrated previously, using mini-chromosome substrates, that physiologically oriented transcription is required for recombination to occur between switch regions. In this report, we demonstrate the formation of an RNA:DNA complex under in vitro transcription conditions for these same and other switch DNA fragments. We find that cell-free transcription of repetitive murine switch regions (Smu, S gamma 2b and S gamma 3) leads to altered DNA mobility on agarose gels. These altered mobilities are resistant to RNase A but sensitive to RNase H. Transcription in the presence of labeled ribonucleotides demonstrates the stable physical association of the RNA with the DNA. Importantly, complex formation only occurs upon transcription in the physiologic orientation. Reaban and Griffin [1990 Nature, 348, 342-344] found an RNA:DNA hybrid structure that was limited to an atypical 143 nucleotide purine region within a 2.3 kb S alpha segment. Here we demonstrate RNA:DNA hybrid formation in more typical switch sequences (lacking the atypical 143 nucleotide purine tract) from a variety of switch regions that are only 60-70% purine on the non-template strand. These results suggest a general model involving an RNA:DNA complex as an intermediate during class switch recombination. Images PMID:8559658

  4. Pd2+/Pd0 redox cycling in hexagonal YMn(0.5)Fe(0.5)O3: implications for catalysis by PGM-substituted complex oxides.

    Science.gov (United States)

    Kurzman, Joshua A; Li, Jun; Schladt, Thomas D; Parra, César R; Ouyang, Xiaoying; Davis, Ryan; Miller, Jeffrey T; Scott, Susannah L; Seshadri, Ram

    2011-09-05

    Complex oxides--containing at least two different cations on crystallographically distinct sites--have recently been shown to display redox cycling of platinum group metals (PGMs), such as Pd; for example, Pd-substituted complex oxides can reversibly extrude metallic Pd under reducing conditions and then reincorporate Pd(2+) ions into the lattice under oxidizing conditions. The title compounds, YMn(0.5)Fe(0.5-x)Pd(x)O(3-δ) (0 ≤ x ≤ 0.07) crystallizing in the noncentrosymmetric YMnO(3) structure, were prepared using a sol-gel process at 800 °C, and the structures were refined from high-resolution synchrotron X-ray powder diffraction data. Their redox cycling behavior was monitored using synchrotron X-ray diffraction and EXAFS studies. In contrast to the previously studied complex oxide host compounds, YMn(0.5)Fe(0.5-x)Pd(x)O(3-δ) is only modestly tolerant to cycling: repeated redox cycling leads to the formation of PdO, which, on the time-scale of the oxidation cycles, does not reincorporate in the complex oxide lattice. Both oxidized and reduced samples were tested for the oxidation of CO to CO(2) under CO-lean conditions. YMn(0.5)Fe(0.5-x)Pd(x)O(3-δ) performs essentially as well as previously studied YFe(1-x)Pd(x)O(3-δ). The CO oxidation light-off characteristics of the hexagonal hosts are very similar to finely dispersed PdO. Despite evidence that Pd is almost fully dispersed as divalent ions in the host lattice, which is presumably accompanied by the concurrent creation of oxygen vacancies (2 Pd(2+):1 V(O(2-))), the as-prepared hexagonal materials do not display any significant improvement in catalytic activity as a function of Pd substitution level. This suggests that the corner-connected trigonal bipyramids that characterize this structural family do not enable the transport of oxygen through the bulk of the lattice. The study casts light on factors in the solid-state chemistry of precious metal-substituted complex oxides that influence the efficacy

  5. Discovery of a Plains Caldera Complex and Extinct Lava Lake in Arabia Terra, Mars: Implications for the Discovery of Additional Highland Volcanic Source Regions

    Science.gov (United States)

    Bleacher, Jacob; Michalski, Joseph

    2012-01-01

    Several irregularly shaped topographic depressions occur near the dichotomy boundary in northern Arabia Terra, Mars. The geomorphology of these features suggests that they formed by collapse, opposed to meteor impact. At least one depression (approx.55 by 85 km) displays geologic features indicating a complex, multi-stage collapse history. Features within and around the collapse structure indicate volcanic processes. The complex occurs within Hesperian ridged plains of likely volcanic origin and displays no crater rim or evidence for ejecta. Instead the depression consists of a series of circumferential graben and down-dropped blocks which also display upper surfaces similar to ridged plain lavas. Large blocks within the depression are tilted towards the crater center, and display graben that appear to have originally been linked with circumferential graben outside of the complex related to earlier collapse events. A nearly 700 m high mound exists along a graben within the complex that might be a vent. The deepest depression displays two sets of nearly continuous terraces, which we interpret as high-stands of a drained lava lake. These features appear similar to the black ledge described during the Kilauea Iki eruption in 1959. A lacustrine origin for the terraces seems unlikely because of the paucity of channels found in or around the depression that could be linked to aqueous surface processes. In addition, there is no obvious evidence for lacustrine sediments within the basin. Together with the presence of significant faulting that is indicative of collapse we conclude that this crater complex represents a large caldera formed in the Late Noachian to Early Hesperian. Other linear and irregular depressions in the region also might be linked to ancient volcanism. If that hypothesis is correct, it suggests that northern Arabia Terra could contain a large, previously unrecognized highland igneous province. Evacuation of magma via explosive and effusive activity

  6. Cryptic patterns of diversification of a widespread Amazonian woodcreeper species complex (Aves: Dendrocolaptidae) inferred from multilocus phylogenetic analysis: implications for historical biogeography and taxonomy.

    Science.gov (United States)

    Sousa-Neves, Tiago; Aleixo, Alexandre; Sequeira, Fernando

    2013-09-01

    Inferring evolutionary relationships between recently diverged taxa is still challenging, especially taking into account the likely occurrence of incomplete lineage sorting and/or introgression. The Xiphorhynchus pardalotus/ocellatus species complex includes between two to three polytypic species and eight to nine subspecies distributed throughout most of lowland Amazonia and the foothills of the eastern Andes. To understand its historical diversification and address the main unsettled issues of phylogenetic relationships and taxonomy, we apply several approaches using data from two mitochondrial (Cyt b and ND2) and three nuclear genes (β-fibint7, CPZint3 and CRYAAint1) for all described species and most subspecies of this complex. We compared single gene trees with a multilocus concatenated tree and Bayesian species tree inferred under a coalescent framework ((*)BEAST). Our results showed a general pattern of incongruence among gene trees and multilocus trees. Despite of this, the coalescent-based species tree analysis supports the sister-taxa relationship of X. ocellatus and X. chunchotambo, while X. pardalotus comes out as the basal taxon. With exception of the last, our results revealed within both X. ocellatus and X. chunchotambo high levels of genetic differentiation (p-distances 0.5-5.5%) with well-supported lineages. Our phylogenetic analyses showed several incongruences with current subspecies taxonomy, revealing that X. o. ocellatus is paraphyletic relative to X. o. perplexus, and the currently recognized subspecies X. c. napensis corresponds to two distinct evolutionary lineages, which are not supported as sister-lineages. In addition, the deep level of genetic divergence between X. o. beauperthuysii and the extant subspecies of X. ocellatus is more consistent with species-level differences found in this complex. Divergence time estimates were consistent with a historical scenario of intense population subdivision and speciation during the Early

  7. Review of In Vivo Bone Strain Studies and Finite Element Models of the Zygomatic Complex in Humans and Nonhuman Primates: Implications for Clinical Research and Practice.

    Science.gov (United States)

    Prado, Felippe Bevilacqua; Freire, Alexandre Rodrigues; Cláudia Rossi, Ana; Ledogar, Justin A; Smith, Amanda L; Dechow, Paul C; Strait, David S; Voigt, Tilman; Ross, Callum F

    2016-12-01

    The craniofacial skeleton is often described in the clinical literature as being comprised of vertical bony pillars, which transmit forces from the toothrow to the neurocranium as axial compressive stresses, reinforced transversely by buttresses. Here, we review the literature on bony microarchitecture, in vivo bone strain, and finite-element modeling of the facial skeleton of humans and nonhuman primates to address questions regarding the structural and functional existence of facial pillars and buttresses. Available bone material properties data do not support the existence of pillars and buttresses in humans or Sapajus apella. Deformation regimes in the zygomatic complex emphasize bending and shear, therefore conceptualizing the zygomatic complex of humans or nonhuman primates as a pillar obscures its patterns of stress, strain, and deformation. Human fossil relatives and chimpanzees exhibit strain regimes corroborating the existence of a canine-frontal pillar, but the notion of a zygomatic pillar has no support. The emerging consensus on patterns of strain and deformation in finite element models (FEMs) of the human facial skeleton corroborates hypotheses in the clinical literature regarding zygomatic complex function, and provide new insights into patterns of failure of titanium and resorbable plates in experimental studies. It is suggested that the "pillar and buttress" model of human craniofacial skeleton function be replaced with FEMs that more accurately and precisely represent in vivo function, and which can serve as the basis for future research into implants used in restoration of occlusal function and fracture repair. Anat Rec, 299:1753-1778, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  8. Neuroanatomy and physiology of the complex tibial organ of an atympanate ensiferan, Ametrus tibialis (Brunner von Wattenwyl, 1888) (Gryllacrididae, Orthoptera) and evolutionary implications.

    Science.gov (United States)

    Strauss, Johannes; Lakes-Harlan, Reinhard

    2008-01-01

    We investigated the neuroanatomy and physiology of the complex tibial organ of an atympanate ensiferan, the Gryllacridid Ametrus tibialis. This represents the first analysis of internal mechanoceptors in Gryllacridids. The complex tibial organ is tripartite consisting of a subgenual organ, intermediate organ and a homologue organ to the crista acustica of tympanate ensiferan taxa of Tettigoniidae, Haglidae, and Anostostomatidae. The crista homologue contains 23 +/- 2 receptor neurons in the foreleg. It is associated with the leg trachea and found serially in all three thoracic leg pairs. Central projections of the sensory nerve of the complex tibial organ bifurcate in two lobes in the prothoracic ganglion, which do not reach the midline. The axonal endings project into the mVAC, the main vibratory-auditory neuropile of Ensifera. Recordings of the tibial nerve show that the tibial organ is sensitive to vibrational stimuli with a minimum threshold of 0.02 to 0.05 ms(-2) at 200-500 Hz, but rather insensitive to airborne sound. The main function of the tibial organ is therefore vibration sensing, although the specific function of the crista homologue remains unclear. The presence of the crista acustica homologue is interpreted in phylogenetic context. Because ensiferan phylogeny is unresolved, two alternative scenarios can be deduced: (a) the crista homologue is a precursor structure which was co-opted as an auditory system and represent a morphologically highly specialized structure before acquisition of its new function; (b) a previously functional tibial ear is evolutionary reduced but the neuronal structures are maintained. Based on comparison of neuroanatomical details, the crista acustica homologue of A. tibialis could present the neuronal complement of an ear evolutionary precursor structure, which was successively made sensitive to airborne sound by elaboration of cuticular tympana, auditory spiracle and trachea for sound propagation.

  9. A clinical study to identify the possible etiology of complex partial seizures using magnetic resonance imaging brain findings and its implications on treatment

    Directory of Open Access Journals (Sweden)

    V Nancy Jeniffer

    2015-01-01

    Full Text Available Context: Epilepsy is one of the common neurological disorders worldwide. Fundamentally, there are two types of epilepsy—primary generalized epilepsy and localization-related epilepsy. Partial seizures account for about 40% of childhood seizures in some series and can be classified as simple or complex.[1] Partial seizures, more so the complex partial seizures (CPSs, are presumed to have a structural etiology. Aims: (1 To study the magnetic resonance imaging (MRI brain findings in CPSs in children aged 1–18 years. (2 To identify treatable causes of CPSs based on MRI findings and institute appropriate treatment. Statistical Analysis: Statistical analysis was performed using percentages and proportions. Methods: Hospital based prospective study in which MRI brain was done on all newly diagnosed children with complex partial seizures, aged 1 to 18 yrs, during the study period. Final diagnosis was made correlating clinical features, radiological features and other supportive evidences, and appropriate treatment instituted. Follow up of cases was done until the completion of treatment (maximum 6 months. Results: Among the 64 children who were clinically diagnosed to have CPSs and subjected to MRI study of the brain, 40(62.5% children were detected to have structural lesions, of which neurocysticercosis (NCC was noted in 17 (42.5%, tuberculoma in 12 (30%, hippocampal sclerosis (HS in 6 (15%, gliosis in 4 (10%, and tumor in 1 (2.5% patient. Sixty-two (96.8% children were treated medically, and 2 (3.2% children underwent surgery. Conclusions: Etiology of CPS based on MRI findings showed a substantial number of medically- and surgically-treatable pathologies. This study done on South Indian children showed neuro infections to be the most common cause of CPS, followed by HS, with NCC being the most common lesion noted. MRI not only identifies specific epileptogenic substrates, but also determines the specific treatment and predicts prognosis and should

  10. Bioenergetics in human evolution and disease: implications for the origins of biological complexity and the missing genetic variation of common diseases.

    Science.gov (United States)

    Wallace, Douglas C

    2013-07-19

    Two major inconsistencies exist in the current neo-Darwinian evolutionary theory that random chromosomal mutations acted on by natural selection generate new species. First, natural selection does not require the evolution of ever increasing complexity, yet this is the hallmark of biology. Second, human chromosomal DNA sequence variation is predominantly either neutral or deleterious and is insufficient to provide the variation required for speciation or for predilection to common diseases. Complexity is explained by the continuous flow of energy through the biosphere that drives the accumulation of nucleic acids and information. Information then encodes complex forms. In animals, energy flow is primarily mediated by mitochondria whose maternally inherited mitochondrial DNA (mtDNA) codes for key genes for energy metabolism. In mammals, the mtDNA has a very high mutation rate, but the deleterious mutations are removed by an ovarian selection system. Hence, new mutations that subtly alter energy metabolism are continuously introduced into the species, permitting adaptation to regional differences in energy environments. Therefore, the most phenotypically significant gene variants arise in the mtDNA, are regional, and permit animals to occupy peripheral energy environments where rarer nuclear DNA (nDNA) variants can accumulate, leading to speciation. The neutralist-selectionist debate is then a consequence of mammals having two different evolutionary strategies: a fast mtDNA strategy for intra-specific radiation and a slow nDNA strategy for speciation. Furthermore, the missing genetic variation for common human diseases is primarily mtDNA variation plus regional nDNA variants, both of which have been missed by large, inter-population association studies.

  11. Mutagenesis and modeling of the peroxiredoxin (Prx) complex with the NMR structure of ATP-bound human sulfiredoxin implicate aspartate 187 of Prx I as the catalytic residue in ATP hydrolysis.

    Science.gov (United States)

    Lee, Duck-Yeon; Park, Sung Jun; Jeong, Woojin; Sung, Ho Jin; Oho, Taena; Wu, Xiongwu; Rhee, Sue Goo; Gruschus, James M

    2006-12-26

    The catalytic cysteine of certain members of the peroxiredoxin (Prx) family can be hyperoxidized to cysteinesulfinic acid during reduction of peroxides. Sulfiredoxin is responsible for the ATP-dependent reduction of cysteinesulfinic acid (SO2H) of hyperoxidized Prx. Here we report the NMR solution structure of human sulfiredoxin (hSrx), both with and without bound ATP, and we model the complex of ATP-bound hSrx with Prx. Binding ATP causes only small changes in the NMR structure of hSrx, and the bound ATP conformation is quite similar to that seen for the previously reported X-ray structure of the ADP-hSrx complex. Although hSrx binds ATP, it does not catalyze hydrolysis by itself and has no catalytic acid residue typical of most ATPase and kinase family proteins. For modeling the complex, the ATP-bound hSrx was docked to hyperoxidized Prx II using EMAP of CHARMM. In the model complex, Asn186 of Prx II (Asp187 of Prx I) is in contact with the hSrx-bound ATP beta- and gamma-phosphate groups. Asp187 of Prx I was mutated to alanine and asparagine, and binding and activity of the mutants with hSrx were compared to those of the wild type. For the D187N mutant, both binding and hydrolysis and reduction activities were comparable to those of the wild type, whereas for D187A, binding was unimpaired but ATP hydrolysis and reduction did not occur. The modeling and mutagenesis analyses strongly implicate Asp187 of Prx I as the catalytic residue responsible for ATP hydrolysis in the cysteinesulfinic acid reduction of Prx by hSrx.

  12. Petrogenesis and tectonic implications of Triassic mafic complexes with MORB/OIB affinities from the western Garzê-Litang ophiolitic mélange, central Tibetan Plateau

    Science.gov (United States)

    Liu, Bin; Ma, Chang-Qian; Guo, Yu-Heng; Xiong, Fu-Hao; Guo, Pan; Zhang, Xin

    2016-09-01

    Although numerous Paleo-Tethyan ophiolites with mid-oceanic ridge basalts (MORB) and/or oceanic-island basalt (OIB) affinities have been reported in the central Tibetan Plateau (CTP), the origin and tectonic nature of these ophiolites are not well understood. The petrogenesis, mantle sources and geodynamic setting of the mafic rocks from these ophiolites are unclear, which is the main reason for this uncertainty. In this paper, we present new geochronological, mineralogical and Sr-Nd isotopic data for the Chayong and Xiewu mafic complexes in the western Garzê-Litang suture zone (GLS), a typical Paleo-Tethyan suture crossing the CTP. Zircon LA-ICP-MS U-Pb ages of 234 ± 3 Ma and 236 ± 2 Ma can be interpreted as formation times of the Chayong and Xiewu mafic complexes, respectively. The basalts and gabbros of the Chayong complex exhibit enriched MORB (E-MORB) compositional affinities except for a weak depletion of Nb, Ta and Ti relative to the primitive mantle, whereas the basalts and gabbros of the Xiewu complex display distinct E-MORB and OIB affinities. The geochemical features suggest a probable fractionation of olivine ± clinopyroxene ± plagioclase as well as insignificant crustal contamination. The geochemical and Sr-Nd isotopic data reveal that the Chayong mafic rocks may have been derived from depleted MORB-type mantle metasomatized by crustal components and Xiewu mafic rocks from enriched lithospheric mantle metasomatized by OIB-like components. The ratios of Zn/Fet, La/Yb and Sm/Yb indicate that these mafic melts were produced by the partial melting of garnet + minor spinel-bearing peridotite or spinel ± minor garnet-bearing peridotite. We propose that back-arc basin spreading associated with OIB/seamount recycling had occurred in the western GLS at least since the Middle Triassic times, and the decompression melting of the depleted MORB-type asthenosphere mantle and partial melting of sub-continental lithosphere were metasomatized by plume

  13. Three-dimensional structure of the ligand-binding core of GluR2 in complex with the agonist (S)-ATPA: implications for receptor subunit selectivity.

    Science.gov (United States)

    Lunn, Marie-Louise; Hogner, Anders; Stensbøl, Tine B; Gouaux, Eric; Egebjerg, Jan; Kastrup, Jette S

    2003-02-27

    Two X-ray structures of the GluR2 ligand-binding core in complex with (S)-2-amino-3-(5-tert-butyl-3-hydroxy-4-isoxazolyl)propionic acid ((S)-ATPA) have been determined with and without Zn(2+) ions. (S)-ATPA induces a domain closure of ca. 21 degrees compared to the apo form. The tert-butyl moiety of (S)-ATPA is buried in a partially hydrophobic pocket and forces the ligand into the glutamate-like binding mode. The structures provide new insight into the molecular basis of agonist selectivity between AMPA and kainate receptors.

  14. Formation and tectonic evolution of the Cretaceous Jurassic Muslim Bagh ophiolitic complex, Pakistan: Implications for the composite tectonic setting of ophiolites

    Science.gov (United States)

    Khan, Mehrab; Kerr, Andrew C.; Mahmood, Khalid

    2007-10-01

    The Muslim Bagh ophiolitic complex Balochistan, Pakistan is comprised of an upper and lower nappe and represents one of a number of ophiolites in this region which mark the boundary between the Indian and Eurasian plates. These ophiolites were obducted onto the Indian continental margin around the Late Cretaceous, prior to the main collision between the Indian and Eurasian plates. The upper nappe contains mantle sequence rocks with numerous isolated gabbro plutons which we show are fed by dolerite dykes. Each pluton has a transitional dunite-rich zone at its base, and new geochemical data suggest a similar mantle source region for both the plutons and dykes. In contrast, the lower nappe consists of pillow basalts, deep-marine sediments and a mélange of ophiolitic rocks. The rocks of the upper nappe have a geochemical signature consistent with formation in an island arc environment whereas the basalts of the lower nappe contain no subduction component and are most likely to have formed at a mid-ocean ridge. The basalts and sediments of the lower nappe have been intruded by oceanic alkaline igneous rocks during the northward drift of the Indian plate. The two nappes of the Muslim Bagh ophiolitic complex are thus distinctively different in terms of their age, lithology and tectonic setting. The recognition of composite ophiolites such as this has an important bearing on the identification and interpretation of ophiolites where the plate tectonic setting is less well resolved.

  15. Binding modes of aromatic ligands to mammalian heme peroxidases with associated functional implications: crystal structures of lactoperoxidase complexes with acetylsalicylic acid, salicylhydroxamic acid, and benzylhydroxamic acid.

    Science.gov (United States)

    Singh, Amit K; Singh, Nagendra; Sinha, Mau; Bhushan, Asha; Kaur, Punit; Srinivasan, Alagiri; Sharma, Sujata; Singh, Tej P

    2009-07-24

    The binding and structural studies of bovine lactoperoxidase with three aromatic ligands, acetylsalicylic acid (ASA), salicylhydoxamic acid (SHA), and benzylhydroxamic acid (BHA) show that all the three compounds bind to lactoperoxidase at the substrate binding site on the distal heme side. The binding of ASA occurs without perturbing the position of conserved heme water molecule W-1, whereas both SHA and BHA displace it by the hydroxyl group of their hydroxamic acid moieties. The acetyl group carbonyl oxygen atom of ASA forms a hydrogen bond with W-1, which in turn makes three other hydrogen-bonds, one each with heme iron, His-109 N(epsilon2), and Gln-105 N(epsilon2). In contrast, in the complexes of SHA and BHA, the OH group of hydroxamic acid moiety in both complexes interacts with heme iron directly with Fe-OH distances of 3.0 and 3.2A respectively. The OH is also hydrogen bonded to His-109 N(epsilon2) and Gln-105N(epsilon2). The plane of benzene ring of ASA is inclined at 70.7 degrees from the plane of heme moiety, whereas the aromatic planes of SHA and BHA are nearly parallel to the heme plane with inclinations of 15.7 and 6.2 degrees , respectively. The mode of ASA binding provides the information about the mechanism of action of aromatic substrates, whereas the binding characteristics of SHA and BHA indicate the mode of inhibitor binding.

  16. Sr-Isotope Composition of Feldspar: Implication for age and Evolution of Gabbros from Uralian-Alaskan Type Complexes in the Ural Mountains, Russia

    Science.gov (United States)

    Bruegmann, G. E.; Krause, J.; Pushkarev, E.

    2006-12-01

    Compared to whole-rock or bulk mineral analyses single mineral composition could reveal disequilibrium features between crystals or within individual crystals which provide important information on magma chamber processes. We applied a LA-ICPMS technique to determine Sr isotopes in plagioclase and K-feldspar of gabbroic rocks from the Nizhnii Tagil and Kytlym complexes in the Ural Mountains in Russia. These complexes are Uralian-Alaskan-type zoned mafic-ultramafic complexes, consisting of dunite, clinopyroxenite and gabbro bodies. The rock association is considered to represent a cumulate sequence of a single parental melt feeding a magma chamber system. The instruments used were a NU Plasma MC-ICPMS and a solid-state 193 and 213 nm Nd:YAG laser ablation system from New Wave. The data of the present study includes up to five spot analyses (100-120 μm spot size) of each mineral in a thin section. Baselines for analyses were measured on-peak for 20 s while flushing the sample chamber with He. About 300 to 500 isotope ratios were measured during the ablation time of 80-100 s. Raw data were exported to an external data reduction spreadsheet and corrected for interferences (Kr, Rb) and mass bias using 87Sr/^{88}Sr=0.1194. During the time of analyses we measured the Sr isotope composition of an in-house marine carbonate reference material. Its 87Sr/86Sr of 0.70923±6 (2SD) agrees within error limits with our TIMS measurements. The gabbros have porphyric textures with clinopyroxene phenocrysts in a matrix of olivine, clinopyroxene and spinel. Two gabbro types can be distinguished based on additional matrix minerals. One type of gabbro is silica saturated, contains plagioclase (An57-88) and in places orthopyroxene as matrix phases. The second gabbro type is silica undersaturated and contains in the matrix plagioclase (An29-56) and pseudoleucite, a fine grained intergrowth of nepheline and K-feldspar (Or30-81). In this gabbro plagioclase has generally higher Sr

  17. Metamorphism of the northern Liaoning Complex: Implications for the tectonic evolution of Neoarchean basement of the Eastern Block, North China Craton

    Directory of Open Access Journals (Sweden)

    Kam Kuen Wu

    2013-05-01

    Full Text Available As one of the areas where typical late Archean crust is exposed in the Eastern Block of the North China Craton, the northern Laioning Complex consists principally of tonalitic-trondhjemitic-granodioritic (TTG gneisses, massive granitoids and supracrustal rocks. The supracrustal rocks, named the Qingyuan Group, consist of interbedded amphibolite, hornblende granulite, biotite granulite and BIF. Petrological evidence indicates that the amphibolites experienced the early prograde (M1, peak (M2 and post-peak (M3 metamorphism. The early prograde assemblage (M1 is preserved as mineral inclusions, represented by actinotite + hornblende + plagioclase + epidote + quartz + sphene, within garnet porphyroblasts. The peak assemblage (M2 is indicated by garnet + clinopyroxene + hornblende + plagioclase + quartz + ilmenite, which occur as major mineral phases in the rock. The post-peak assemblage (M3 is characterized by the garnet + quartz symplectite. The P–T pseudosections in the NCFMASHTO system constructed by using THERMOCALC define the P–T conditions of M1, M2 and M3 at 490–550 °C/<4.5 kbar, 780–810 °C/7.65–8.40 kbar and 630–670 °C/8.15–9.40 kbar, respectively. As a result, an anticlockwise P–T path involving isobaric cooling is inferred for the metamorphic evolution of the amphibolites. Such a P–T path suggests that the late Archean metamorphism of the northern Liaoning Complex was related to the intrusion and underplating of mantle-derived magmas. The underplating of voluminous mantle-derived magmas leading to metamorphism with an anticlockwise P–T path involving isobaric cooling may have occurred in continental magmatic arc regions, above hot spots driven by mantle plumes, or in continental rift environments. A mantle plume model is favored because this model can reasonably interpret many other geological features of late Archean basement rocks from the northern Liaoning Complex in the Eastern Block of

  18. The early Cretaceous orogen-scale Dabieshan metamorphic core complex: implications for extensional collapse of the Triassic HP-UHP orogenic belt in east-central China

    Science.gov (United States)

    Ji, Wenbin; Lin, Wei; Faure, Michel; Shi, Yonghong; Wang, Qingchen

    2016-03-01

    The Dabieshan massif is famous as a portion of the world's largest HP-UHP metamorphic belt in east-central China that was built by the Triassic North-South China collision. The central domain of the Dabieshan massif is occupied by a huge migmatite-cored dome [i.e., the central Dabieshan dome (CDD)]. Origin of this domal structure remains controversial. Synthesizing previous and our new structural and geochronological data, we define the Cretaceous Dabieshan as an orogen-scale metamorphic core complex (MCC) with a multistage history. Onset of lithospheric extension in the Dabieshan area occurred as early as the commencement of crustal anatexis at the earliest Cretaceous (ca. 145 Ma), which was followed by primary (early-stage) detachment during 142-130 Ma. The central Dabieshan complex in the footwall and surrounding detachment faults recorded a consistently top-to-the-NW shearing. It is thus inferred that the primary detachment was initiated from a flat-lying detachment zone at the middle crust level. Removal of the orogenic root by delamination at ca. 130 Ma came into the extensional climax, and subsequently isostatic rebound resulted in rapid doming. Along with exhumation of the footwall, the mid-crustal detachment zone had been warped as shear zones around the CDD. After 120 Ma, the detachment system probably experienced a migration accommodated to the crustal adjustment, which led to secondary (late-stage) detachment with localized ductile shearing at ca. 110 Ma. The migmatite-gneiss with HP/UHP relicts in the CDD (i.e., the central Dabieshan complex) was product of the Cretaceous crustal anatexis that consumed the deep-seated part of the HP-UHP slices and the underlying para-autochthonous basement. Compared with the contemporaneous MCCs widely developed along the eastern margin of the Eurasian continent, we proposed that occurrence of the Dabieshan MCC shares the same tectonic setting as the "destruction of the North China craton". However, geodynamic trigger

  19. The early Cretaceous orogen-scale Dabieshan metamorphic core complex: implications for extensional collapse of the Triassic HP-UHP orogenic belt in east-central China

    Science.gov (United States)

    Ji, Wenbin; Lin, Wei; Faure, Michel; Shi, Yonghong; Wang, Qingchen

    2017-06-01

    The Dabieshan massif is famous as a portion of the world's largest HP-UHP metamorphic belt in east-central China that was built by the Triassic North-South China collision. The central domain of the Dabieshan massif is occupied by a huge migmatite-cored dome [i.e., the central Dabieshan dome (CDD)]. Origin of this domal structure remains controversial. Synthesizing previous and our new structural and geochronological data, we define the Cretaceous Dabieshan as an orogen-scale metamorphic core complex (MCC) with a multistage history. Onset of lithospheric extension in the Dabieshan area occurred as early as the commencement of crustal anatexis at the earliest Cretaceous (ca. 145 Ma), which was followed by primary (early-stage) detachment during 142-130 Ma. The central Dabieshan complex in the footwall and surrounding detachment faults recorded a consistently top-to-the-NW shearing. It is thus inferred that the primary detachment was initiated from a flat-lying detachment zone at the middle crust level. Removal of the orogenic root by delamination at ca. 130 Ma came into the extensional climax, and subsequently isostatic rebound resulted in rapid doming. Along with exhumation of the footwall, the mid-crustal detachment zone had been warped as shear zones around the CDD. After 120 Ma, the detachment system probably experienced a migration accommodated to the crustal adjustment, which led to secondary (late-stage) detachment with localized ductile shearing at ca. 110 Ma. The migmatite-gneiss with HP/UHP relicts in the CDD (i.e., the central Dabieshan complex) was product of the Cretaceous crustal anatexis that consumed the deep-seated part of the HP-UHP slices and the underlying para-autochthonous basement. Compared with the contemporaneous MCCs widely developed along the eastern margin of the Eurasian continent, we proposed that occurrence of the Dabieshan MCC shares the same tectonic setting as the "destruction of the North China craton". However, geodynamic trigger

  20. Geochemical and isotopic constraints on the petrogenesis of the Puesto La Peña undersaturated potassic complex, Mendoza province, Argentina: Geodynamic implications

    Science.gov (United States)

    Zappettini, Eduardo O.; Villar, Luisa M.; Hernández, Laura B.; Santos, João O.

    2013-03-01

    Major and trace element and radiogenic and stable isotope data are reported for the Miocene Puesto La Peña undersaturated potassic complex, located in the Argentine Precordillera. The complex is composed of a pyroxenite core surrounded by a malignite-borolanite association, followed by radial and ring dikes composed of alkaline lamprophyres, tephrite to phonolite and intermediate varieties, porphyritic microledmorite, benmoreite, alkaline trachyte and a swarm of ultrabasic ouachitite dikes. Late trachytic to phonolitic volcanic necks and associated dikes crop out surrounding the malignitic-borolanitic massif. Major and trace element data are consistent with their derivation by partial melting from an enriched, probably lithospheric, metasomatized heterogeneous mantle involving spinel- and garnet-facies mantle sources. The trace element and isotope data indicate that all rock types are derived from a common parental magma and are thus cogenetic. Sr, Nd and Pb variations in the different studied lithologies are restricted, except for the evidence of Sr decoupling in the ouachitite samples. Their Sr-Nd isotope compositions follow the "mantle array" defined by oceanic basalts, within the OIB field, consistent with an intraplate depleted source. The genesis of the ouachitite is interpreted to be related to mixing between asthenospheric magma and melts from the lower lithosphere consisting of K-rich metasomatic layers. The Dupal like Pb isotopes signature suggests a mantle modification by introduction of continental crust material in the upper mantle; this is consistent with the Sr-Nd isotope data from the late silica-undersaturated felsic dikes and volcanic necks. Multistage mantle extraction would have occurred by the end of Neoproterozoic to lower Paleozoic times as indicated by the isotopic data. Partial melting was initiated by mantle upwelling decompression during lithosphere extension. Back-arc extensional conditions during the latest Early Miocene (19 Ma

  1. Petrochemistry and hydrothermal alteration within the Tyrone Igneous Complex, Northern Ireland: implications for VMS mineralization in the British and Irish Caledonides

    Science.gov (United States)

    Hollis, Steven P.; Roberts, Stephen; Earls, Garth; Herrington, Richard; Cooper, Mark R.; Piercey, Stephen J.; Archibald, Sandy M.; Moloney, Martin

    2014-06-01

    Although volcanogenic massive sulfide (VMS) deposits can form within a wide variety of rift-related tectonic environments, most are preserved within suprasubduction affinity crust related to ocean closure. In stark contrast to the VMS-rich Appalachian sector of the Grampian-Taconic orogeny, VMS mineralization is rare in the peri-Laurentian British and Irish Caledonides. Economic peri-Gondwanan affinity deposits are limited to Avoca and Parys Mountain. The Tyrone Igneous Complex of Northern Ireland represents a ca. 484-464 Ma peri-Laurentian affinity arc-ophiolite complex and a possible broad correlative of the Buchans-Robert's Arm belt of Newfoundland, host to some of the most metal-rich VMS deposits globally. Stratigraphic horizons prospective for VMS mineralization in the Tyrone Igneous Complex are associated with rift-related magmatism, hydrothermal alteration, synvolcanic faults, and high-level subvolcanic intrusions (gabbro, diorite, and/or tonalite). Locally intense hydrothermal alteration is characterized by Na-depletion, elevated SiO2, MgO, Ba/Sr, Bi, Sb, chlorite-carbonate-pyrite alteration index (CCPI) and Hashimoto alteration index (AI) values. Rift-related mafic lavas typically occur in the hanging wall sequences to base and precious metal mineralization, closely associated with ironstones and/or argillaceous sedimentary rocks representing low temperature hydrothermal venting and volcanic quiescence. In the ca. 475 Ma pre-collisional, calc-alkaline lower Tyrone Volcanic Group rift-related magmatism is characterized by abundant non-arc type Fe-Ti-rich eMORB, island-arc tholeiite, and low-Zr tholeiitic rhyolite breccias. These petrochemical characteristics are typical of units associated with VMS mineralization in bimodal mafic, primitive post-Archean arc terranes. Following arc-accretion at ca. 470 Ma, late rifting in the ensialic upper Tyrone Volcanic Group is dominated by OIB-like, subalkaline to alkali basalt and A-type, high-Zr rhyolites. These units

  2. From the Cover: Implications for complex cognition from the hafting of tools with compound adhesives in the Middle Stone Age, South Africa.

    Science.gov (United States)

    Wadley, Lyn; Hodgskiss, Tamaryn; Grant, Michael

    2009-06-16

    Compound adhesives made from red ochre mixed with plant gum were used in the Middle Stone Age (MSA), South Africa. Replications reported here suggest that early artisans did not merely color their glues red; they deliberately effected physical transformations involving chemical changes from acidic to less acidic pH, dehydration of the adhesive near wood fires, and changes to mechanical workability and electrostatic forces. Some of the steps required for making compound adhesive seem impossible without multitasking and abstract thought. This ability suggests overlap between the cognitive abilities of modern people and people in the MSA. Our multidisciplinary analysis provides a new way to recognize complex cognition in the MSA without necessarily invoking the concept of symbolism.

  3. Geochronological, geochemical, and Nd-Hf isotopic studies of the Qinling Complex, central China: Implications for the evolutionary history of the North Qinling Orogenic Belt

    Directory of Open Access Journals (Sweden)

    Chunrong Diwu

    2014-07-01

    The available data indicate that the NQOB was an independent micro-continent at least prior to the Neoproterozoic, and included a portion of the Grenville orogenic belt during the period of 1.2–0.8 Ga. The NQOB has experienced a unique geological history, which is obviously different from that of the North China Craton (NCC and the Yangtze Craton during the Precambrian. The Neoproterozoic granitoids that intruded the Qinling Complex can be interpreted as the products of assembly of the supercontinent Rodinia. The NQOB was separated from Rodinia at ca. 830–740 Ma. Subsequently, the NQOB moved closer to the northern margin of the NCC, and the initial accretion or collision with the NCC occurred from the late Cambrian to the early Ordovician.

  4. Calcareous nannofossil biostratigraphy and geochronology of Neogene trench-slope cover sediments in the south Boso Peninsula, central Japan: Implications for the development of a shallow accretionary complex

    Science.gov (United States)

    Chiyonobu, Shun; Yamamoto, Yuzuru; Saito, Saneatsu

    2017-07-01

    The geological structure and calcareous nannofossil biostratigraphy of the Middle to Late Miocene trench-slope succession in the southern Boso Peninsula, central Japan, were examined to obtain chronological constraints on the accretion and formation of the trench-slope architecture. As a result, trench-slope cover sediments (Kinone and Amatsu Formations) are clearly distinguishable from the Early Miocene Hota accretionary complex (Hota Group). The Hota accretionary complex was deposited below the carbonate compensation depth (CCD) and was affected by intense shearing, forming an east-west trending and south-verging fold and thrust belt. In contrast, the trench-slope cover sediments basically have a homoclinal dip, except at the northern rim where they are bounded by fault contact. They contain many species of calcareous nannofossils and foraminifers, which are indicative of their depositional environment above the CCD, and they show shallowing-upward sedimentary structures. Biostratigraphy revealed that the depositional age of the trench-slope sediments is ca. 15-5.5 Ma, suggesting that there is an approximately 2 myr hiatus beween the Miura Group and the underlying accretionary prism. Based on these results, the age of accretion of the Hota Group is inferred to be between ca. 17-15 Ma, and the group is covered by trench-slope sediments overlain on it after ca. 15 Ma. The timing of accretion and the age of the trench-slope basin tend to be younger southward of the Boso Peninsula. The accretionary system of the Boso Peninsula apparently developed in two stages, in the Middle Miocene and in the Late Miocene to Pliocene.

  5. Late Cretaceous paleomagnetism of the East Ranges island arc complex, Kamchatka: Implications for terrane movements and kinematics of the northwest Pacific

    Science.gov (United States)

    Levashova, Natalia M.; Bazhenov, Mikhail L.; Shapiro, Mikhail N.

    1997-11-01

    A Campanian-lower Paleocene island arc complex was sampled for paleomagnetic studies at 12 sites in the East Ranges tectonic zone of Kamchatka. After thermal demagnetization, a reversed polarity characteristic remanent magnetization (ChRM) was isolated from most volcanoclastic and basaltic units as well as from lava debris from intraformational conglomerates. The fold and conglomerate tests are positive, and the ChRM in the studied rocks is likely primary. The formation-mean inclination of 66.3°±3.7° corresponds to a paleolatitude of 48.7°±5.0°N which is about 20° lower than the Late Cretaceous North American reference values. Because northward displacement of the studied terrane is indicated by the paleomagnetic data, we examine several models of intraoceanic transport with the Pacific and/or Kula plates and coastwise transport after terrane accretion, far to the south of the present-day position of Kamchatka. Our preferred interpretation is that the studied island arc complex accumulated at about 83-79 Ma; the island arc, to which the studied terrane had originally belonged, was active between this time and 65-60 Ma. According to geological data, the docking time nearly coincided with cessation of volcanic activity, and northward movement of the island arc took place simultaneously with the volcanic activity. The absolute motion of a subduction zone should have the same direction as the overriding plate; therefore, the subduction zone related to the East Ranges island arc is inferred to have moved northward with the Kula plate or with the Kula and Pacific plates, successively, consuming either the oceanic periphery of a continental plate or some unknown minor oceanic plate. This process went on until 65-55 Ma when the island arc and related subduction zone approached the continental margin and became extinct. The proposed models also place additional constraints on kinematics of the Kula-Pacific transform plate boundary.

  6. Petrochemistry of Khunrang intrusive complex, southeast of Kerman, Iran: Implications for magmatic evolution of Sanandaj-Sirjan zone in the Mesozoic time

    Science.gov (United States)

    Sedighian, Soudeh; Dargahi, Sara; Arvin, Mohsen

    2017-10-01

    A noticeable characteristic of the Sanandaj-Sirjan zone (SSZ) of Iran is the presence of extensive mafic to felsic intrusive igneous rocks in the host metamorphic rocks of Palaeozoic and Mesozoic eras. A similar composition is evident in batholithic size Khunrang Instrusive Complex (KIC) of southern SSZ. The rocks that make the KIC complex are mostly leucocratic microdiorite, quartz diorite, tonalite, granodiorite, granite and subordinate mesocratic to melanocratic pyroxene hornblende-gabbro and microgabbro. Field evidence and geochemical data suggest that the felsic rocks are not the products of fractional crystallization from a mafic phase. Using various discrimination and normalized multi-element diagrams suggest that mafic rocks, of tholeiitic to calc-alkaline affinities, were formed in an island arc or continental arc setting, from a metasomatized lithospheric mantle, above the stability field of garnet in a subduction zone environment. The felsic rocks, calc-alkaline and metaluminous in nature, have I-type granite characteristics. Their relative enrichment in large ion lithophile elements (LILEs) such as Ba, Cs and K and depletion in high field strength elements (HFSEs) such as Nb, Ta and Ti, is a signature of their development in an arc related environment in an active continental margin, similar to KIC mafic rocks. Geochemical characteristics suggest that the KIC felsic rocks were formed by partial melting of metabasic rocks of lower crust in response to underplating of mantle-derived basaltic magmas in an active continental margin as a result of Neo-Tethys oceanic crust subduction beneath the Central Iranian microcontinent in Mesozoic time.

  7. The Bossoroca Complex, São Gabriel Terrane, Dom Feliciano Belt, southernmost Brazil: Usbnd Pb geochronology and tectonic implications for the neoproterozoic São Gabriel Arc

    Science.gov (United States)

    Gubert, Mauricio Lemos; Philipp, Ruy Paulo; Stipp Basei, Miguel Angelo

    2016-10-01

    Usbnd Pb LA-ICPMS geochronological analyses were carried out on zircon grains from metavolcanic rocks of the Bossoroca Complex and for one ash tuff of the Acampamento Velho Formation of the Camaquã Basin, in order to understand the evolution of the Neoproterozoic São Gabriel magmatic arc. A total of 42 analyses of igneous zircon grains were performed in three samples. The results yielded Usbnd Pb ages of 767.2 ± 2.9 Ma for the metavolcanic agglomerate (BOS-02); 765 ± 10 Ma for the metacrystal tuff (BOS-03) and 565.8 ± 4.8 Ma for the ash tuff (BOS-04). The Orogenic Cycle in Brazil is characterized by a set of orogenic belts consisting of petrotectonic associations juxtaposed by two collisional events that occurred at the end of the Neoproterozoic. In southern Brazil this orogeny formed the Dom Feliciano Belt, a unit composed of associations of rocks developed during two major orogenic events called São Gabriel (900-680 Ma) and Dom Feliciano (650-540 Ma). The main São Gabriel associations are tectonically juxtaposed as elongated strips according to the N20-30°E direction, bounded by ductile shear zones. The Bossoroca Complex comprises predominantly metavolcano-sedimentary rocks, characterized by medium-K calc-alkaline association generated in a cordillera-type magmatic arc. The volcanism occurred in sub-aerial environment, developing deposits generated by flow, resurgence and fall, sporadically interrupted by subaqueous epiclastic deposits, suggesting an arc related basin. The São Gabriel Terrane contains the petrotectonic units that represent the closure of the Charrua Ocean associated to the subduction period of the Brasiliano Orogenic Cycle in the Sul-rio-grandense Shield.

  8. Niche overlap of congeneric invaders supports a single-species hypothesis and provides insight into future invasion risk: implications for global management of the Bactrocera dorsalis complex.

    Science.gov (United States)

    Hill, Matthew P; Terblanche, John S

    2014-01-01

    The invasive fruit fly, Bactrocera invadens, has expanded its range rapidly over the past 10 years. Here we aimed to determine if the recent range expansion of Bactrocera invadens into southern Africa can be better understood through niche exploration tools, ecological niche models (ENMs), and through incorporating information about Bactrocera dorsalis s.s., a putative conspecific species from Asia. We test for niche overlap of environmental variables between Bactrocera invadens and Bactrocera dorsalis s.s. as well as two other putative conspecific species, Bactrocera philippinensis and B. papayae. We examine overlap and similarity in the geographical expression of each species' realised niche through reciprocal distribution models between Africa and Asia. We explore different geographical backgrounds, environmental variables and model complexity with multiple and single Bactrocera species hypotheses in an attempt to predict the recent range expansion of B. invadens into northern parts of South Africa. Bactrocera invadens has a high degree of niche overlap with B. dorsalis s.s. (and B. philippinensis and B. papayae). Ecological niche models built for Bactrocera dorsalis s.s. have high transferability to describe the range of B. invadens, and B. invadens is able to project to the core range of B. dorsalis s.s. The ENMs of both Bactrocera dorsalis and B. dorsalis combined with B. philipenesis and B. papayae have significantly higher predictive ability to capture the distribution points in South Africa than for B. invadens alone. Consistent with other studies proposing these Bactrocera species as conspecific, niche similarity and overlap between these species is high. Considering these other Bactrocera dorsalis complex species simultaneously better describes the range expansion and invasion potential of B. invadens in South Africa. We suggest that these species should be considered the same-at least functionally-and global quarantine and management strategies applied

  9. Structures of ceftazidime and its transition-state analogue in complex with AmpC beta-lactamase: Implications for resistance mutations and inhibitor design

    Energy Technology Data Exchange (ETDEWEB)

    Powers, R.A.; Caselli, E.; Focia, P.J.; Prati, F.; Shoichet, B.K.

    2010-03-08

    Third-generation cephalosporins are widely used {beta}-lactam antibiotics that resist hydrolysis by {beta}-lactamases. Recently, mutant {beta}-lactamases that rapidly inactivate these drugs have emerged. To investigate why third-generation cephalosporins are relatively stable to wild-type class C {beta}-lactamases and how mutant enzymes might overcome this, the structures of the class C {beta}-lactamase AmpC in complex with the third-generation cephalosporin ceftazidime and with a transition-state analogue of ceftazidime were determined by X-ray crystallography to 2.0 and 2.3 {angstrom} resolution, respectively. Comparison of the acyl-enzyme structures of ceftazidime and loracarbef, a {beta}-lactam substrate, reveals that the conformation of ceftazidime in the active site differs from that of substrates. Comparison of the structures of the acyl-enzyme intermediate and the transition-state analogue suggests that ceftazidime blocks formation of the tetrahedral transition state, explaining why it is an inhibitor of AmpC. Ceftazidime cannot adopt a conformation competent for catalysis due to steric clashes that would occur with conserved residues Val211 and Tyr221. The X-ray crystal structure of the mutant {beta}-lactamase GC1, which has improved activity against third-generation cephalosporins, suggests that a tandem tripeptide insertion in the {Omega} loop, which contains Val211, has caused a shift of this residue and also of Tyr221 that would allow ceftazidime and other third-generation cephalosporins to adopt a more catalytically competent conformation. These structural differences may explain the extended spectrum activity of GC1 against this class of cephalosporins. In addition, the complexed structure of the transition-state analogue inhibitor (K{sub i} 20 nM) with AmpC reveals potential opportunities for further inhibitor design.

  10. Fe- and Cu-complex formation with artificial ligands investigated by ultra-high resolution Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS: Implications for natural metal-organic complex studies

    Directory of Open Access Journals (Sweden)

    Hannelore Waska

    2016-07-01

    Full Text Available In recent years, electrospray-ionization mass spectrometry (ESI-MS has been increasingly used to complement the bulk determination of metal-ligand equilibria, for example via competitive ligand exchange-adsorptive cathodic stripping voltammetry (CLE-ACSV. However, ESI-MS speciation analyses may be impacted by instrumental artefacts such as reduction reactions, fragmentation, and adduct formation at the ESI source, changes in the ionization efficiencies of the detected species in relation to sample matrix, and peak overlaps in response to increasing sample complexity. In our study, equilibria of the known artificial ligands citrate, ethylenediaminetetraacetic acid (EDTA, 1-nitroso-2-naphthol (NN, and salicylaldoxime (SA with iron (Fe and copper (Cu were investigated by ultra-high resolution ESI-MS, Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR-MS, under a variety of sample matrix and ionization settings. The acquired mass spectra were compared with metal-ligand equilibrium data from the literature as well as an adapted speciation model. Overall, the mass spectra produced representative species mentioned in previous reports and predicted by the speciation calculations, such as Fe(Cit, Cu(Cit2, Fe(EDTA, Cu(EDTA, Fe(NN3, and Cu(SA2. The analyses furthermore revealed new species which had been hypothesized but not measured directly using other methods, for example ternary complexes of citrate with Fe and Cu, Cu(SA monomers, and the dimer Fe(SA2. Finally, parallel measurements of a Cu+SA calibration series and a Cu+SA+EDTA competition series indicated that FT-ICR-MS can produce linear responses and low detection limits analogous to those of ACSV. We propose that ultra-high resolution FT-ICR-MS can be used as a representative tool to study interactions of trace metals with artificial as well as natural, unknown ligands at the molecular level.

  11. Eocene Granitoids of the Okhotsk Complex in Sakhalin Island, Russian Far East: Petrogenesis and tectonic implications from zircon U-Pb ages, geochemical and Sr-Nd isotopic characteristics

    Science.gov (United States)

    Liao, Jia Ping; Alexandrov, Igor; Jahn, Bor-ming

    2016-04-01

    Sakhalin Island represents an important part of the Western Pacific Orogenic Belt (or "Nipponides"). The island comprises several accreted terrains that have recorded strike-slip displacements and block rotations from Cretaceous to Tertiary. These terrains include fore-arc basins, accretionary complexes and island arc assemblages. The stratigraphic features of most terrains can be correlated to those of Hokkaido Island of Japan. However, little research has been undertaken on the magmatic activities on Sakhalin, so a direct comparison of crustal development and tectonic activities with Hokkaido has not been fulfilled. We intend to study the petrogenesis of granitic complexes of Sakhalin to resolve this problem. In this work, we present new results of age determination and geochemical analyses of the Okhotsk Complex and discuss the tectonic implications. The Okhotsk complex is one of the three main granitoid complexes in Sakhalin Island. It intruded into the Ozersk accretionary terrain that is composed of island arc assemblages and marine sediments and has traveled northward and accreted to Sakhalin Island in Eocene. Eleven samples from the Okhotsk Complex, including 7 granitoids, 1 enclave, 2 rhyolites, and 1 dacite, were subject to zircon U-Pb dating, whole-rock geochemical and Sr-Nd isotopic analyses. The results show that the entire complex was emplaced within 42 to 44 Ma. The 7 granitoids are slightly peraluminous, ferroan, and alkali-calcic. The REE abundances of granitoids show consistent patterns with weak LREE enrichment and negative Eu anomaly. The spidergrams show negative Ta-Nb-Ti anomaly as expected in most granitoids. They possess transitional characteristics between I- and A-type granites. For isotopic signatures, the granitoids have ɛNd(t) values of +2.8 to +3.7, initial 87Sr/86Sr ratios of 0.7047 to 0.7050, and Sm-Nd model ages (TDM-1) of 700-1100 Ma. The middle Eocene magmatic episode (42-44 Ma) of the Okhotsk Complex can find its counterpart in

  12. Echinococcus P29 antigen: molecular characterization and implication on post-surgery follow-up of CE patients infected with different species of the Echinococcus granulosus complex.

    Science.gov (United States)

    Boubaker, Ghalia; Gottstein, Bruno; Hemphill, Andrew; Babba, Hamouda; Spiliotis, Markus

    2014-01-01

    The protein P29 is a potential serological marker for post-treatment monitoring of cystic echinococcosis (CE) especially in young patients. We now have demonstrated that P29 is encoded in the Echinococcus genus by a single gene consisting of 7 exons spanning 1.2 kb of DNA. Variability of the p29 gene at inter- and intra-species level was assessed with 50 cDNA and 280 genomic DNA clones isolated from different E. granulosus s.l. isolates (E. granulosus sensu stricto (G1), E. equinus (G4), E. ortleppi (G5), E. canadensis (G6), E. canadensis (G7) and E. canadensis (G10)) as well as four E. multilocularis isolates. Scarce interspecies polymorphism at the p29 locus was observed and affected predominantly E. granulosus s.s. (G1), where we identified two alleles (A1 and A2) coding for identical P29 proteins and yielding in three genotypes (A1/A1, A2/A2 and A1/A2). Genotypic frequencies expected under Hardy-Weinberg equilibrium revealed a high rate of heterozygosity (47%) that strongly supports the hypothesis that E. granulosus s.s. (G1) is predominantly outbreeding. Comparative sequence analyses of the complete p29 gene showed that phylogenetic relationships within the genus Echinococcus were in agreement with those of previous nuclear gene studies. At the protein level, the deduced P29 amino acid (AA) sequences exhibited a high level of conservation, ranging from 97.9% AA sequence identity among the whole E. granulosus s.l. group to 99.58% identity among E. multilocularis isolates. We showed that P29 proteins of these two species differ by three AA substitutions without implication for antigenicity. In Western-blot analyses, serum antibodies from a human CE patient infected with E. canadensis (G6) strongly reacted with recombinant P29 from E. granulosus s.s. (G1) (recEg(G1)P29). In the same line, human anti-Eg(G1)P29 antibodies bound to recEcnd(G6)P29. Thus, minor AA sequence variations appear not to impair the prognostic serological use of P29.

  13. The internal structure of eclogite-facies ophiolite complexes: Implications from the Austroalpine outliers within the Zermatt-Saas Zone, Western Alps

    Science.gov (United States)

    Weber, Sebastian; Martinez, Raul

    2016-04-01

    The Western Alpine Penninic domain is a classical accretionary prism that formed after the closure of the Penninic oceans in the Paleogene. Continental and oceanic nappes were telescoped into the Western Alpine stack associated with continent-continent collision. Within the Western Alpine geologic framework, the ophiolite nappes of the Zermatt-Saas Zone and the Tsate Unit are the remnants of the southern branch of the Piemonte-Liguria ocean basin. In addition, a series of continental basement slices reported as lower Austroalpine outliers have preserved an eclogitic high-pressure imprint, and are tectonically sandwiched between these oceanic nappes. Since the outliers occur at an unusual intra-ophiolitic setting and show a polymetamorphic character, this group of continental slices is of special importance for understanding the tectono-metamorphic evolution of Western Alps. Recently, more geochronological data from the Austroalpine outliers have become available that make it possible to establish a more complete picture of their complex geological history. The Lu-Hf garnet-whole rock ages for prograde growth of garnet fall into the time interval of 52 to 62 Ma (Weber et al., 2015, Fassmer et al. 2015), but are consistently higher than the Lu-Hf garnet-whole rock ages from several other locations throughout the Zermatt-Saas zone that range from 52 to 38 Ma (Skora et al., 2015). This discrepancy suggests that the Austroalpine outliers may have been subducted earlier than the ophiolites of the Zermatt-Saas Zone and therefore have been tectonically emplaced into their present intra-ophiolite position. This points to the possibility that the Zermatt-Saas Zone consists of tectonic subunits, which reached their respective pressure peaks over a prolonged time period, approximately 10-20 Ma. The pressure-temperature estimates from several members of the Austroalpine outliers indicate a complex distribution of metamorphic peak conditions, without ultrahigh

  14. An integrated study on microtectonics, geothermometry and thermochronology of the Çataldaǧ Core Complex (NW Turkey): Implications for cooling, deformation and uplift history

    Science.gov (United States)

    Kamaci, Omer; Altunkaynak, Safak

    2017-04-01

    We present an integrated study on structure, microstructure, geothermometry and thermochronology of the Çataldaǧ Core Complex (ÇCC) in NW Turkey in order to understand the cooling, deformation and uplift mechanisms. ÇCC is formed from an Eo-Oligocene granite-gneiss-migmatite complex (GGMC) and an Early Miocene I-type granodioritic body (ÇG: Çataldaǧ granodiorite) which were exhumed as a dome-shaped core complex in the footwall of a ring-shaped low-angle detachment zone (The Çataldaǧ Detachment Fault Zone; ÇDFZ) in the Early Miocene. New U-Pb zircon (LA-ICPMS) and monazite ages of GGMC yielded magmatic ages of 33.8 and 30.1 Ma (Latest Eocene-Early Oligocene). 40Ar/39Ar muscovite, biotite and K-feldspar from the GGMC yielded the deformation age span 21.38±0,05 Ma and 20.81±0.04 Ma, which is also the emplacement age (20.84±0.13 Ma and 21.6±0.04 Ma) of ÇG. ÇDFZ is responsible for mainly top-to-the-north sense kinematic processes. The microstructural features of quartz, feldspar and mica indicate that the ÇCC has undergone continuous deformations during its cooling, from submagmatic to cataclastic conditions. Five microstructural grades have been classified under ductile (DZ) and ductile-to-brittle shear zone (SZ), according to the estimated deformation temperature and intensity of the strain. Microcline twinning, marginally replacement myrmekite and flame-perthite are predominant features for feldspar while chessboard extinction, grain boundary migration and subgrain rotation recrystallization is common for quartz in the DZ which has a deformation temperature range of >600°C to 400°C. Grain size reduction is an important factor for the ductile to brittle shear zone (SZ). Feldspar is represented by bulging recrystallization (BLG), feldspar-fish and domino-type microfracture/microfaulting and quartz show more elongated structures such as ribbons with high aspect ratios. Mineral-fish (muscovite, biotite and feldspar) structures indicate a temperature

  15. Early Cretaceous wedge extrusion in the Indo-Burma Range accretionary complex: implications for the Mesozoic subduction of Neotethys in SE Asia

    Science.gov (United States)

    Zhang, Ji'en; Xiao, Wenjiao; Windley, Brian F.; Cai, Fulong; Sein, Kyaing; Naing, Soe

    2017-06-01

    The Indo-Burma Range (IBR) of Myanmar, the eastern extension of the Yarlung-Tsangpo Neotethyan belt of Tibet in China, contains mélanges with serpentinite, greenschist facies basalt, chert, sericite schist, silty slate and unmetamorphosed Triassic sandstone, mudstone and siltstone interbedded with chert in the east, and farther north high-pressure blueschist and eclogite blocks in the Naga Hills mélange. Our detailed mapping of the Mindat and Magwe sections in the middle IBR revealed a major 18 km antiformal isocline in a mélange in which greenschist facies rocks in the core decrease in grade eastwards and westwards symmetrically `outwards' to lower grade sericite schist and silty slate, and at the margins to unmetamorphosed sediments, and these metamorphic rocks are structurally repeated in small-scale imbricated thrust stacks. In the Mindat section the lower western boundary of the isoclinal mélange is a thrust on which the metamorphic rocks have been transported over unmetamorphosed sediments of the Triassic Pane Chaung Group, and the upper eastern boundary is a normal fault. These relations demonstrate that the IBR metamorphic rocks were exhumed by wedge extrusion in a subduction-generated accretionary complex. Along strike to the north in the Naga Hills is a comparable isoclinal mélange in which central eclogite lenses are succeeded `outwards' by layers of glaucophane schist and glaucophanite, and to lower grade greenschist facies sericite schist and slate towards the margins. In the Natchaung area (from west to east) unmetamorphosed Triassic sediments overlie quartzites, sericite schists, actinolite schists and meta-volcanic amphibolites derived from MORB-type basalt, which are in fault contact with peridotite. Olivine in the peridotite has undulatory extinction suggesting deformation at 600-700 °C, similar to the peak temperature of the amphibolite; these relations suggest generation in a metamorphic sole. The amphibolites have U/Pb zircon ages of 119

  16. Conformational states of Ras complexed with the GTP analogue GppNHp or GppCH2p: implications for the interaction with effector proteins.

    Science.gov (United States)

    Spoerner, Michael; Nuehs, Andrea; Ganser, Petra; Herrmann, Christian; Wittinghofer, Alfred; Kalbitzer, Hans Robert

    2005-02-15

    The guanine nucleotide-binding protein Ras occurs in solution in two different states, state 1 and state 2, when the GTP analogue GppNHp is bound to the active center as detected by (31)P NMR spectroscopy. Here we show that Ras(wt).Mg(2+).GppCH(2)p also exists in two conformational states in dynamic equilibrium. The activation enthalpy DeltaH(++)(12) and the activation entropy DeltaS(++)(12) for the transition from state 1 to state 2 are 70 kJ mol(-1) and 102 J mol(-1) K(-1), within the limits of error identical to those determined for the Ras(wt).Mg(2+).GppNHp complex. The same is true for the equilibrium constants K(12) = [2]/[1] of 2.0 and the corresponding DeltaG(12) of -1.7 kJ mol(-1) at 278 K. This excludes a suggested specific effect of the NH group of GppNHp on the equilibrium. The assignment of the phosphorus resonance lines of the bound analogues has been done by two-dimensional (31)P-(31)P NOESY experiments which lead to a correction of the already reported assignments of bound GppNHp. Mutation of Thr35 in Ras.Mg(2+).GppCH(2)p to serine leads to a shift of the conformational equilibrium toward state 1. Interaction of the Ras binding domain (RBD) of Raf kinase or RalGDS with Ras(wt) or Ras(T35S) shifts the equilibrium completely to state 2. The (31)P NMR experiments suggest that, besides the type of the side chain of residue 35, a main contribution to the conformational equilibrium in Ras complexes with GTP and GTP analogues is the effective acidity of the gamma-phosphate group of the bound nucleotide. A reaction scheme for the Ras-effector interaction is presented which includes the existence of two conformations of the effector loop and a weak binding state.

  17. The geological implications of some 3-D 'Fishnet' seismic images of Guelph pinnacle reefs in Ontario : a different perspective on their growth, destruction and complexity

    Energy Technology Data Exchange (ETDEWEB)

    Bailey, S.M.B. [Bailey Geological Services Ltd., London, ON (Canada)

    2002-07-01

    Exploration of underground oil and gas reservoirs has been enhanced since the development of 3-D seismic technology, which provides the ability to view structural anomalies, salt domes or lithologic buildups. 3-D seismic images were used to view the true geometry of carbonate structures within Silurian Guelph reefs in southwestern Ontario. The images provided a better understanding of how they grew, plus when and how they were destroyed by post-depositional weathering processes. 3-D seismic images allow oil and gas companies to explore and develop a series of wells through tight and porous segments of a reservoir with extreme precision. The Guelph reefs of Ontario are Middle Silurian in age and are part of an entire complex of reefs, banks, barriers and associated facies which grew in a circular fashion around a structural basement sag known as the Michigan Basin. The author explains how two reefs of the same physical height can be so evidently different in physical appearance. He presents his interpretation of how the Bentpath East Pinnacle Reef and the Tipperary Pinnacle reef underwent completely different histories of weathering, destruction, and construction. 16 refs., 1 tab., 33 figs.

  18. Complexities of Nitrogen Isotope Biogeochemistry in Plant-Soil Systems: Implications for the Study of Ancient Agricultural and Animal Management Practices

    Directory of Open Access Journals (Sweden)

    Paul eSzpak

    2014-06-01

    Full Text Available Nitrogen isotopic studies have potential to shed light on the structure of ancient ecosystems, agropastoral regimes, and human-environment interactions. Until relatively recently, however, little attention was paid to the complexities of nitrogen transformations in ancient plant-soil systems and their potential impact on plant and animal tissue nitrogen isotopic compositions. This paper discusses the importance of understanding nitrogen dynamics in ancient contexts, and highlights several key areas of archaeology where a more detailed understanding of these processes may enable us to answer some fundamental questions. This paper explores two larger themes that are prominent in archaeological studies using stable nitrogen isotope analysis: (1 agricultural practices (use of animal fertilizers, burning of vegetation or shifting cultivation, and tillage and (2 animal domestication and husbandry (grazing intensity/stocking rate and the foddering of domestic animals with cultigens. The paucity of plant material in ancient deposits necessitates that these issues are addressed primarily through the isotopic analysis of skeletal material rather than the plants themselves, but the interpretation of these data hinges on a thorough understanding of the underlying biogeochemical processes in plant-soil systems. Building on studies conducted in modern ecosystems and under controlled conditions, these processes are reviewed, and their relevance discussed for ancient contexts.

  19. Structures of mylonitic granites of the Yagan metamorphic core complex on Sino-Mongolian border——implications for its kinematics and chronology

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The mylonitic granitic plutons are extended in line-shape (L) and parallel to the regional extensional shear foliation. After being unstrained, the primary shapes of these plutons are also nearly sheet-like (S). Their fabrics are of S-L or L type. Various kinds of shear marks indicate top-to-south shear. The plutons of various stages are different in deformation intensity; however, the foliation and lineation of these rocks have the same shear sense, which suggests progressive ductile shearing. The development mechanisms of the fabrics include magmatic flow, high-temperature solidstate flow and mid-low temperature solid-state flow. All this demonstrates that these plutons are probably early synextensional tectonic plutons. Their structural features and ages suggest that the low- and mid-crustal extensional detachments might have occurred at the early stage of the development of the metamorphic core complex in the early Mesozoic. These deformations are much deeper at levels and much older than those formed at the final formation stage.

  20. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones

    Directory of Open Access Journals (Sweden)

    Coral Y. Zhou

    2017-06-01

    Full Text Available The hexameric AAA+ ATPases Rvb1 and Rvb2 (Rvbs are essential for diverse processes ranging from metabolic signaling to chromatin remodeling, but their functions are unknown. While originally thought to act as helicases, recent proposals suggest that Rvbs act as protein assembly chaperones. However, experimental evidence for chaperone-like behavior is lacking. Here, we identify a potent protein activator of the Rvbs, a domain in the Ino80 ATPase subunit of the INO80 chromatin-remodeling complex, termed Ino80INS. Ino80INS stimulates Rvbs’ ATPase activity by 16-fold while concomitantly promoting their dodecamerization. Using mass spectrometry, cryo-EM, and integrative modeling, we find that Ino80INS binds asymmetrically along the dodecamerization interface, resulting in a conformationally flexible dodecamer that collapses into hexamers upon ATP addition. Our results demonstrate the chaperone-like potential of Rvb1/Rvb2 and suggest a model where binding of multiple clients such as Ino80 stimulates ATP-driven cycling between hexamers and dodecamers, providing iterative opportunities for correct subunit assembly.

  1. Crystal structure of the WOPR-DNA complex and implications for Wor1 function in white-opaque switching of Candida albicans.

    Science.gov (United States)

    Zhang, Shicheng; Zhang, Tianlong; Yan, Minghui; Ding, Jianping; Chen, Jiangye

    2014-09-01

    Wor1 (white-opaque switching regulator 1) is a master regulator of the white-opaque switching in Candida albicans, an opportunistic human fungal pathogen, and is associated with its pathogenicity and commensality. Wor1 contains a conserved DNA-binding region at the N-terminus, consisting of two conserved segments (WOPRa and WOPRb) connected by a non-conserved linker that can bind to specific DNA sequences of the promoter regions and then regulates the transcription. Here, we report the crystal structure of the C. albicans Wor1 WOPR segments in complex with a double-stranded DNA corresponding to one promoter region of WOR1. The sequentially separated WOPRa and WOPRb are structurally interwound together to form a compact globular domain that we term the WOPR domain. The WOPR domain represents a new conserved fungal-specific DNA-binding domain which uses primarily a conserved loop to recognize and interact specifically with a conserved 6-bp motif of the DNA in both minor and major grooves. The protein-DNA interactions are essential for WOR1 transcriptional regulation and white-to-opaque switching. The structural and biological data together reveal the molecular basis for the recognition and binding specificity of the WOPR domain with its specific DNA sequences and the function of Wor1 in the activation of transcription.

  2. Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.

    Science.gov (United States)

    Callahan, Scott J; Luyten, Yvette A; Gupta, Yogesh K; Wilson, Geoffrey G; Roberts, Richard J; Morgan, Richard D; Aggarwal, Aneel K

    2016-04-01

    The creation of restriction enzymes with programmable DNA-binding and -cleavage specificities has long been a goal of modern biology. The recently discovered Type IIL MmeI family of restriction-and-modification (RM) enzymes that possess a shared target recognition domain provides a framework for engineering such new specificities. However, a lack of structural information on Type IIL enzymes has limited the repertoire that can be rationally engineered. We report here a crystal structure of MmeI in complex with its DNA substrate and an S-adenosylmethionine analog (Sinefungin). The structure uncovers for the first time the interactions that underlie MmeI-DNA recognition and methylation (5'-TCCRAC-3'; R = purine) and provides a molecular basis for changing specificity at four of the six base pairs of the recognition sequence (5'-TCCRAC-3'). Surprisingly, the enzyme is resilient to specificity changes at the first position of the recognition sequence (5'-TCCRAC-3'). Collectively, the structure provides a basis for engineering further derivatives of MmeI and delineates which base pairs of the recognition sequence are more amenable to alterations than others.

  3. Structural and biophysical characterization of an epitope-specific engineered Fab fragment and complexation with membrane proteins: implications for co-crystallization.

    Science.gov (United States)

    Johnson, Jennifer L; Entzminger, Kevin C; Hyun, Jeongmin; Kalyoncu, Sibel; Heaner, David P; Morales, Ivan A; Sheppard, Aly; Gumbart, James C; Maynard, Jennifer A; Lieberman, Raquel L

    2015-04-01

    Crystallization chaperones are attracting increasing interest as a route to crystal growth and structure elucidation of difficult targets such as membrane proteins. While strategies to date have typically employed protein-specific chaperones, a peptide-specific chaperone to crystallize multiple cognate peptide epitope-containing client proteins is envisioned. This would eliminate the target-specific chaperone-production step and streamline the co-crystallization process. Previously, protein engineering and directed evolution were used to generate a single-chain variable (scFv) antibody fragment with affinity for the peptide sequence EYMPME (scFv/EE). This report details the conversion of scFv/EE to an anti-EE Fab format (Fab/EE) followed by its biophysical characterization. The addition of constant chains increased the overall stability and had a negligible impact on the antigen affinity. The 2.0 Å resolution crystal structure of Fab/EE reveals contacts with larger surface areas than those of scFv/EE. Surface plasmon resonance, an enzyme-linked immunosorbent assay, and size-exclusion chromatography were used to assess Fab/EE binding to EE-tagged soluble and membrane test proteins: namely, the β-barrel outer membrane protein intimin and α-helical A2a G protein-coupled receptor (A2aR). Molecular-dynamics simulation of the intimin constructs with and without Fab/EE provides insight into the energetic complexities of the co-crystallization approach.

  4. Determination by NMR of the binding constant for the molecular complex between alprostadil and alpha-cyclodextrin. Implications for a freeze-dried formulation.

    Science.gov (United States)

    Ramstad, Tore; Hadden, Chad E; Martin, Gary E; Speaker, Stanley M; Teagarden, Dirk L; Thamann, Thomas J

    2005-05-30

    A binding constant was determined for the complexation reaction between alprostadil (PGE1) and alpha-cyclodextrin (alpha-CD). This constant was used to calculate the fraction PGE1 free upon reconstitution of Caverject dual chamber syringe, indicated for the treatment of erectile dysfunction. The determination was based on the measurement of the chemical shift of the C20 methyl protons of PGE1. The observed chemical shift varies as a linear function of the amount of PGE1 bound. The binding constant was obtained from the binding isotherm, a curve of the observed chemical shift versus free ligand (alpha-CD) concentration, through the application of non-linear regression analysis. A value K11 = 966 M(-1) +/- 130 M(-1) (2s), measured at 27 degrees C, was obtained. This value is in good agreement with those reported in the literature. The percent PGE1 free was subsequently calculated for the reconstituted solution and in the corpora cavernosum after injection. The latter showed PGE1 to be delivered essentially quantitatively to the targeted site.

  5. Diversification of both KIR and NKG2 natural killer cell receptor genes in macaques - implications for highly complex MHC-dependent regulation of natural killer cells.

    Science.gov (United States)

    Walter, Lutz; Petersen, Beatrix

    2017-02-01

    The killer immunoglobulin-like receptors (KIR) as well as their MHC class I ligands display enormous genetic diversity and polymorphism in macaque species. Signals resulting from interaction between KIR or CD94/NKG2 receptors and their cognate MHC class I proteins essentially regulate the activity of natural killer (NK) cells. Macaque and human KIR share many features, such as clonal expression patterns, gene copy number variations, specificity for particular MHC class I allotypes, or epistasis between KIR and MHC class I genes that influence susceptibility and resistance to immunodeficiency virus infection. In this review article we also annotated publicly available rhesus macaque BAC clone sequences and provide the first description of the CD94-NKG2 genomic region. Besides the presence of genes that are orthologous to human NKG2A and NKG2F, this region contains three NKG2C paralogues. Hence, the genome of rhesus macaques contains moderately expanded and diversified NKG2 genes in addition to highly diversified KIR genes. The presence of two diversified NK cell receptor families in one species has not been described before and is expected to require a complex MHC-dependent regulation of NK cells. © 2016 John Wiley & Sons Ltd.

  6. Coincidence of gabbro and granulite formation and their implication for Variscan HT metamorphism in the Moldanubian Zone (Bohemian Massif), example from the Kutná Hora Complex

    Science.gov (United States)

    Faryad, Shah Wali; Kachlík, Václav; Sláma, Jiří; Jedlicka, Radim

    2016-11-01

    Leucocratic metagabbro and amphibolite from a mafic-ultramafic body within migmatite and granulite in the Kutná Hora Complex were investigated. The mafic-ultramafic rocks show amphibolite facies metamorphism, but in the central part of the body some metagabbro preserves cumulus and intercumulus plagioclase, clinopyroxene and spinel. Spinel forms inclusions in both clinopyroxene and plagioclase and shows various degree of embayment structure, that was probably a result of reaction with melt during magmatic crystallization. In the metagabbro, garnet forms coronae around clinopyroxene at the contacts with plagioclase. Amphibolite contains garnet with prograde zoning and plagioclase. Phase relations of igneous and metamorphic minerals indicate that magmatic crystallization and subsequent metamorphism occurred as a result of isobaric cooling at a depth of 30-35 km. U-Pb dating on zircon from leucogabbro yielded a Variscan age (337.7 ± 2 Ma) that is similar or close to the age of granulite facies metamorphism (ca 340 Ma) in the Moldanubian Zone. Based on the calculated PT conditions and age data, both the mafic-ultramafic body and surrounding granulite shared the same exhumation path from their middle-lower crustal position at the end of Variscan orogeny. The coincidence of mafic-ultramafic intrusives and granulite-amphibolite facies metamorphism is explained by lithospheric upwelling beneath the Moldanubian Zone that occurred due to slab break-off during the final stages of subduction of the Moldanubian plate beneath the Teplá Barrandian Block. The model also addresses questions about the preservation of minerals and/or their compositions from the early metamorphic history of the rocks subjected to ultradeep subduction and subsequent granulite facies metamorphism.

  7. Facies analysis of an ancient, dismembered, large caldera complex and implications for intra-arc subsidence: Middle Jurassic strata of Cobre Ridge, southern Arizona, USA

    Science.gov (United States)

    Riggs, Nancy R.; Busby-Spera, Cathy J.

    1991-11-01

    The Middle Jurassic (˜ 170 Ma) Cobre Ridge caldera is an elongate caldera complex that formed during the eruption of the tuff of Pajarito, a crystal-rich rhyodacite ignimbrite with an estimated volume > 1000 km 3. The caldera subsided in two subequal blocks: to the southeast, caldera-forming ignimbrite is as much as 3000 m thick, whereas the northwest half of the caldera subsided to lesser depths during the initial eruption, but was the locus of subsidence during subsequent eruptions, providing a depocenter for a > 1.5 km-thick section of secondary- and post-collapse volcanic and sedimentary strata. These strata record moat formation and filling and waning volcanism, including: (1) areally restricted ignimbrites up to several tens of meters thick that may have been ponded between caldera margins and/or fault scarps; (2) a ⩾ 600 m-thick ignimbrite whose eruption probably caused further collapse of the caldera or enlargement of the caldera margins; (3) a localized debris apron deposit up to 500 m thick that represents material reworked from intra-caldera pyroclastic deposits and possibly caldera walls; and (4) eolian and fluvial sandstones and water-lain tuffs. Megabreccia blocks as large as 0.5 km along strike probably demarcate approximate caldera margins, suggesting that the composite caldera was approximately 50 km long by 25 km wide. The preserved thickness of the strata of Cobre Ridge ( > 4500 m) is greater than many ancient continental volcanic sequences, suggesting external (i.e. tectonic) controls on subsidence, but preservation of this great thickness of strata is apparently due entirely to volcanic subsidence.

  8. Petrology and geochemistry of Abyssal Peridotites from the Manipur Ophiolite Complex, Indo-Myanmar Orogenic Belt, Northeast India: Implication for melt generation in mid-oceanic ridge environment

    Science.gov (United States)

    Krishnakanta Singh, A.

    2013-04-01

    The Manipur Ophiolite Complex (MOC) located in the Indo-Myanmar Orogenic Belt (IMOB) of Northeast India forms a section of the Tethyan Ophiolite Belt of the Alpine-Himalayan orogenic system. Whole rock compositions and mineral chemistry of mantle peridotites from the MOC show an affinity to the abyssal peridotites, characterized by high contents of Al2O3 (1.28-3.30 anhydrous wt.%); low Cr# of Cr-spinel (0.11-0.27); low Mg# of olivine (˜Fo90) and high Al2O3 in pyroxenes (3.71-6.35 wt.%). They have very low REE concentrations (∑REE = 0.48-2.14 ppb). Lherzolites display LREE-depleted patterns (LaN/SmN = 0.14-0.45) with a flat to slightly fractionated HREE segments (SmN/YbN = 0.30-0.65) whereas Cpx-harburgites have flat to upward-inflected LREE patterns (LaN/SmN = 0.13-1.23) with more fractionated HREE patterns (SmN/YbN = 0.13-0.65) than the lherzolite samples. Their platinum group elements (PGE) contents (<50 ppb) and distinct mantle-normalised PGE patterns with the Pd/Ir values (1.8-11.9) and Pt/Pt* values (0.2-1.1) show an affinity to the characteristic of the residual mantle material. Evaluation of mineralogical and petrological characteristics of these peridotites suggests that they represent the residues remaining after low degree of partial melting (˜2-12%) in the spinel stability field of a mid-oceanic ridge environment. The well-preserved mid-oceanic ridge characteristics of these peridotites further suggest that the mantle section was subsequently trapped in the forearc region of the subduction zone without undergoing significant modification in their chemistry by later subduction-related tectonic and petrological processes before its emplacement to the present crustal level.

  9. Geologic processes in the RWMC area, Idaho National Engineering Laboratory: Implications for long term stability and soil erosion at the radioactive waste management complex

    Energy Technology Data Exchange (ETDEWEB)

    Hackett, W.R.; Tullis, J.A.; Smith, R.P. [and others

    1995-09-01

    The Radioactive Waste Management Complex (RWMC) is the disposal and storage facility for low-level radioactive waste at the Idaho National Engineering Laboratory (INEL). Transuranic waste and mixed wastes were also disposed at the RWMC until 1970. It is located in the southwestern part of the INEL about 80 km west of Idaho Falls, Idaho. The INEL occupies a portion of the Eastern Snake River Plain (ESRP), a low-relief, basalt, and sediment-floored basin within the northern Rocky Mountains and northeastern Basin and Range Province. It is a cool and semiarid, sagebrush steppe desert characterized by irregular, rolling terrain. The RWMC began disposal of INEL-generated wastes in 1952, and since 1954, wastes have been accepted from other Federal facilities. Much of the waste is buried in shallow trenches, pits, and soil vaults. Until about 1970, trenches and pits were excavated to the basalt surface, leaving no sediments between the waste and the top of the basalt. Since 1970, a layer of sediment (about 1 m) has been left between the waste and the basalt. The United States Department of Energy (DOE) has developed regulations specific to radioactive-waste disposal, including environmental standards and performance objectives. The regulation applicable to all DOE facilities is DOE Order 5820.2A (Radioactive Waste Management). An important consideration for the performance assessment of the RWMC is the long-term geomorphic stability of the site. Several investigators have identified geologic processes and events that could disrupt a radioactive waste disposal facility. Examples of these {open_quotes}geomorphic hazards{close_quotes} include changes in stream discharge, sediment load, and base level, which may result from climate change, tectonic processes, or magmatic processes. In the performance assessment, these hazards are incorporated into scenarios that may affect the future performance of the RWMC.

  10. Genetic Sensitivity to the Environment: The Case of the Serotonin Transporter Gene and Its Implications for Studying Complex Diseases and Traits

    Science.gov (United States)

    Caspi, Avshalom; Hariri, Ahmad R.; Holmes, Andrew; Uher, Rudolf; Moffitt, Terrie E.

    2010-01-01

    Evidence of marked variability in response among people exposed to the same environmental risk implies that individual differences in genetic susceptibility might be at work. The study of such Gene-by-Environment (G×E) interactions has gained momentum. In this article, the authors review research about one of the most extensive areas of inquiry: variation in the promoter region of the serotonin transporter gene (SLC6A4; also known as 5-HTT) and its contribution to stress sensitivity. Research in this area has both advanced basic science and generated broader lessons for studying complex diseases and traits. The authors evaluate four lines of evidence about the 5-HTT stress-sensitivity hypothesis: 1) observational studies about the serotonin transporter linked polymorphic region (5-HTTLPR), stress sensitivity, and depression in humans; 2) experimental neuroscience studies about the 5-HTTLPR and biological phenotypes relevant to the human stress response; 3) studies of 5-HTT variation and stress sensitivity in nonhuman primates; and 4) studies of stress sensitivity and genetically engineered 5-HTT mutations in rodents. The authors then dispel some misconceptions and offer recommendations for G×E research. The authors discuss how G×E interaction hypotheses can be tested with large and small samples, how G×E research can be carried out before as well as after replicated gene discovery, the uses of G×E research as a tool for gene discovery, the importance of construct validation in evaluating G×E research, and the contribution of G×E research to the public understanding of genetic science. PMID:20231323

  11. Direct observation of heavy metal-mineral association from the Clark Fork River Superfund Complex: Implications for metal transport and bioavailability

    Science.gov (United States)

    Hochella, M.F.; Moore, J.N.; Putnis, C.V.; Putnis, A.; Kasama, T.; Eberl, D.D.

    2005-01-01

    Two sets of samples from riverbeds and adjacent floodplains, separated by 80 river kilometers, were collected from the Clark Fork River Superfund Complex, Montana, (the largest Superfund site in the United States), and studied primarily with transmission electron microscopy (TEM) with several supporting techniques to determine heavy metal-mineral association. Seven of the eight samples studied were strongly influenced by material that once resided in mining and smelting dumps and impoundments; this material was transported downstream sometime during the last century and a half from the Butte/Anaconda areas. The eighth sample was from a deeper floodplain level and dates to premining days. The TEM observations afford a direct look, down to the nanometer level, at secondary mineral formation as a result of the breakdown of sulfides and silicates in the acid environment of this massive mine-drainage system. In the shallow, oxic floodplain sediments, heavy metals of concern in this system (As, Cu, Pb, and Zn) are taken up by the formation of sulfates (particularly Pb in jarosite), as well as hydrous metal oxides (As, Cu, Pb, and Zn in and on ferrihydrite, and a possibly new vernadite-like mineral). The oxides are long-lived in these systems, as they were also found in the anoxic riverbeds. Metals are also taken up by the formation of sulfides in sulfate-reducing environments as observed in the formation of nanoclusters of chalcopyrite and sphalerite. In all samples, clays make up between 5 and 20% of the sediment and carry significant amounts of Cu and Zn. The hydrous oxides, secondary sulfides, and clays provide several routes for metal transport downstream over long distances. Besides the potential bioavailability of heavy metals exchanged on and off the hydrous metal oxides and clays, nanometer-sized sulfides may also be highly reactive in the presence of biologic systems. Copyright ?? 2005 Elsevier Ltd.

  12. Ordovician ocean plate stratigraphy and thrust duplexes of the Ballantrae Complex, SW Scotland: Implications for the pelagic deposition rate and forearc accretion in the closing Iapetus Ocean

    Science.gov (United States)

    Fujisaki, Wataru; Asanuma, Hisashi; Suzuki, Kazue; Sawaki, Yusuke; Sakata, Shuhei; Hirata, Takafumi; Maruyama, Shigenori; Windley, Brian F.

    2015-11-01

    The Ballantrae Complex (at Bennane Lea in SW Scotland) contains important ocean plate stratigraphy (basalt, chert, mudstone, sandstone) in an accretionary prism that is associated with a classic Ordovician ophiolite. We used the ocean plate stratigraphy to sub-divide the prism into 11 tectonic units. To determine the depositional age of bedded cherts, zircons were separated from 9 tuff beds from 6 different units. All the tuffs have early to middle Ordovician ages, even though their present positions are mutually distant. These ages are consistent with microfossil records of radiolaria and graptolites. The stratigraphic-structural relationships demonstrate that the ocean plate stratigraphy has been repeated by bedding-parallel thrusts; this is typical of a modern accretionary duplex. We calculated the sedimentation rate of Early to Middle Ordovician bedded cherts at Bennane Lea on the basis of U-Pb zircon ages obtained from several tuff beds; the data indicate that the depositional rate (0.6-3 m/myr) was as slow as that of Mesozoic-Cenozoic equivalents defined by radiolaria. The age spectra of detrital zircons from Ballantrae sandstones show prominent single peaks at ca. 467 and 478 Ma, and a lack of Precambrian zircons. Integration of our new zircon ages with published isotopic data and palaeo-geographic maps indicates that the sandstones were deposited near an intra-oceanic arc and far from any continent containing Precambrian rocks. The pelagic-to-clastic sediments at Bennane Lea were deposited in the closing Iapetus Ocean from ca. 477 Ma to ca. 464 Ma, when they were accreted with the intra-oceanic arc of Ballantrae.

  13. Evaluating Wind Fields from a Diagnostic Model Over Complex Terrain in the Phoenix Region and Implications to Dispersion Calculations for Regional Emergency Response

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Weiguo; Shaw, William J.

    2009-12-01

    This paper compares the wind field from a diagnostic model (CALMET) over complex terrain in the Phoenix region in the USA with observations that are gridded by a state-of-the-art Four-Dimensional Data Assimilation (FDDA) system. The wind difference between the CALMET and FDDA wind fields is larger at night than in the day. The magnitude of the wind difference can be smaller than 5% of the mean wind speed at low levels in areas with dense observational stations, while it can be larger than 80% in areas without observational stations or at high altitudes. The vector-mean wind direction difference over the domain is 15 deg on the surface level and 25 deg between 10 and 1500 m. To evaluate the effects of the wind difference on dispersion calculations, dispersion of a hypothetical passive tracer released from surface point sources is simulated by the second-order closure integrated puff (SCIPUFF) model driven by the CALMET and FDDA wind fields, respectively. Differences in the two simulated tracer concentration fields increase with time due to accumulation of effects of the wind differences both near the surface and at higher altitudes. Even for the release in the area with the densest distribution of surface stations, the relative difference in the peak surface concentration from CALMET-SCIPUFF and from FDDA-SCIPUFF is less than 10% only within 0.5 hr after the release in the afternoon, and increases to 70% at 1.5 hr; this is because of large differences in wind above the surface. For the release in the area with few stations, the difference can be larger than 100% or even larger after 1.5 hr from the release. To improve dispersion simulations driven by the CALMET wind in the region, observations at upper-air stations are needed and the current surface observation network needs to be reorganized or more stations are needed to account for the influence of terrain.

  14. Multiple low-temperature thermochronology constraints on exhumation of the Tatra Mountains: New implication for the complex evolution of the Western Carpathians in the Cenozoic

    Science.gov (United States)

    Anczkiewicz, Aneta Agnieszka; Danišík, Martin; Środoń, Jan

    2015-11-01

    The tectonothermal evolution of the highest mountain range in the Carpathian arc—the Tatra Mountains— is investigated by zircon and apatite fission track and zircon (U-Th)/He (ZHe) dating methods in order to unravel the disputed exhumation and geodynamic processes in the Western Carpathians. Our data in combination with geological evidences reveal a complex Cenozoic history, with four major tectonothermal events: (i) a very low grade metamorphism of the crystalline basement at temperatures >240°C due to tectonic burial during the Eo-Alpine collision in the Late Cretaceous (~80 Ma); (ii) exhumation and cooling of the basement to temperatures 150°C after burial to 5-9 km depths by the Paleogene fore-arc basin; (iv) final exhumation of the segmented basement blocks during Oligocene-Miocene (32-11 Ma) owing to lateral extrusion of the North Pannonian plate and its collision with the European foreland. The spatial pattern of thermochronological data suggests asymmetric exhumation of the Tatra Mountains, beginning in the northwest at ~30-20 Ma with low cooling rates (~1-5°C/Ma) and propagating toward the major fault bounding the range in the south, where the youngest cooling ages (16-9 Ma) and fastest cooling rates (~10-20°C/Ma) are found. Our data prove that the Tatra Mountains shared Cenozoic evolution of other crystalline core mountains in the Western Carpathians. However, the Miocene ZHe ages suggest that the Tatra Mountains were buried to the greatest depths in the Paleogene-Early Miocene and experienced the greatest amount of Miocene exhumation.

  15. Evolutionary Landscape of the Mycobacterium tuberculosis Complex from the Viewpoint of PhoPR: Implications for Virulence Regulation and Application to Vaccine Development

    Science.gov (United States)

    Broset, Esther

    2015-01-01

    ABSTRACT Different members of the Mycobacterium genus have evolved to cause tuberculosis in diverse human populations and in a variety of animal species. Our cumulative knowledge of mycobacterial genomes indicates that mutations in the PhoPR two-component virulence system were acquired not only during the natural evolution of mycobacterial species but also during in vitro subculture, which has given rise to the attenuated reference strain H37Ra or to different daughter strains of Mycobacterium bovis BCG. PhoPR is a well-known regulator of pathogenic phenotypes, including secretion of the virulence factor ESAT-6, biosynthesis of acyltrehalose-based lipids, and modulation of antigen export, in members of the Mycobacterium tuberculosis complex (MTBC). Evolutionarily conserved polymorphisms in PhoPR from Mycobacterium africanum, M. bovis, or M. tuberculosis H37Ra result in loss of functional phenotypes. Interestingly, some members of the MTBC have acquired compensatory mutations to counteract these polymorphisms and, probably, to maintain their pathogenic potential. Some of these compensatory mutations include the insertion of the IS6110 element upstream from phoPR in a particular M. bovis strain that is able to transmit between humans or polymorphisms in M. africanum and M. bovis that affect the regulatory region of the espACD operon, allowing PhoPR-independent ESAT-6 secretion. This review highlights the increasing knowledge of the significance of PhoPR in the evolution of the MTBC and its potential application in the construction of new attenuated vaccines based on phoPR inactivation. In this context, the live attenuated vaccine MTBVAC, based on a phoP fadD26 deletion mutant of M. tuberculosis, is the first vaccine of this kind to successfully enter into clinical development, representing a historic milestone in the field of human vaccinology. PMID:26489860

  16. Complex and Conflicting Social Norms: Implications for Implementation of Future HIV Pre-Exposure Prophylaxis (PrEP Interventions in Vancouver, Canada.

    Directory of Open Access Journals (Sweden)

    Rod Knight

    Full Text Available HIV Pre-Exposure Prophylaxis (PrEP has been found to be efficacious in preventing HIV acquisition among seronegative individuals in a variety of risk groups, including men who have sex with men and people who inject drugs. To date, however, it remains unclear how socio-cultural norms (e.g., attitudes towards HIV; social understandings regarding HIV risk practices may influence the scalability of future PrEP interventions. The objective of this study is to assess how socio-cultural norms may influence the implementation and scalability of future HIV PrEP interventions in Vancouver, Canada.We conducted 50 interviews with young men (ages 18-24 with a variety of HIV risk behavioural profiles (e.g., young men who inject drugs; MSM. Interviews focused on participants' experiences and perceptions with various HIV interventions and policies, including PrEP.While awareness of PrEP was generally low, perceptions about the potential personal and public health gains associated with PrEP were interconnected with expressions of complex and sometimes conflicting social norms. Some accounts characterized PrEP as a convenient form of reliable protection against HIV, likening it to the female birth control pill. Other accounts cast PrEP as a means to facilitate 'socially unacceptable' behaviour (e.g., promiscuity. Stigmatizing rhetoric was used to position PrEP as a tool that could promote some groups' proclivities to take 'risks'.Stigma regarding 'risky' behaviour and PrEP should not be underestimated as a serious implementation challenge. Pre-implementation strategies that concomitantly aim to improve knowledge about PrEP, while addressing associated social prejudices, may be key to effective implementation and scale-up.

  17. Adsorption and Oxidation of Aromatic Amines on Metal(II Hexacyanocobaltate(III Complexes: Implication for Oligomerization of Exotic Aromatic Compounds

    Directory of Open Access Journals (Sweden)

    Rachana Sharma

    2017-03-01

    Full Text Available Based on the hypothesis on the presence of double metal cyanides in the primordial oceans, a series of nano-sized metal(II hexacyanocobaltate(III (MHCCo with the general formula: M3[Co(CN6]2•xH2O (where M = Zn, Fe, Ni and Mn has been synthesized. Surface interaction of aromatic amines, namely aniline, 4-chloroaniline, 4-methylaniline and 4-methoxyaniline with MHCCo particles has been carried out at the concentration range of 100–400 μM at pH~7.0. The percentage binding of aromatic amines on MHCCo surface was found to be in the range of 84%–44%. The trend in adsorption was in accordance to the relative basicity of the studied amines. At the experimental pH, amines reacted rapidly with the surface of the iron(II hexacyanocobaltate, producing colored products that were analyzed by Gas Chromatography Mass Spectroscopy (GC-MS. GC-MS analysis of the colored products demonstrated the formation of dimers of the studied aromatic amines. Surface interaction of aromatic amines with MHCCo was studied by Fourier Transform Infrared (FT-IR spectroscopy and Field Emission Scanning Electron Microscopy (FE-SEM. The change in amine characteristic frequencies, as observed by FT-IR, suggests that interaction took place through the NH2 group on amines with metal ions of hexacyanocobaltate complexes. FE-SEM studies revealed the adherence of 4-methoxyaniline on zinc hexacyanocobaltate particles surface. We proposed that MHCCo might have been formed under the conditions on primitive Earth and may be regarded as an important candidate for concentrating organic molecules through the adsorption process.

  18. Zircon U-Pb geochronology and geochemistry of low-grade metamorphosed volcanic rocks from the Dantazi Complex: Implications for the evolution of the North China Craton

    Science.gov (United States)

    Ge, Songsheng; Zhai, Mingguo; Li, Tiesheng; Peng, Peng; Santosh, M.; Shan, Houxiang; Zuo, Pengfei

    2015-11-01

    The late Neoarchean witnessed the cratonization of the North China Craton (NCC) through amalgamation of several micro-blocks to form a coherent basement. The Archean orthogneisses and supracrustal rocks in this craton have experienced various grades of metamorphism ranging up to upper amphibolite and granulite facies at ∼2500 Ma. Recently, a suite of low-grade metamorphosed (greenschist to lower amphibolite facies) volcanic rocks was discovered in the late Neoarchean Dantazi Complex in northern Hebei province. These meta-volcanic rocks consist of bimodal basalt-andesite and trachyte-dacite with a SiO2 gap between 54.4 wt.% and 60.7 wt.%. Here we report SHRIMP zircon U-Pb ages of 2490 ± 19 Ma (MSWD = 2.0) and 2502 ± 8 Ma (MSWD = 0.83) from the meta-mafic and meta-felsic volcanics, respectively, representing the timing of igneous activity. All the meta-mafic volcanic rocks display coherent trace element and REE patterns which are characterized by enriched LILE and LREE but depleted HFSE and HREE ((La/Yb)N = 6.29-15.10). Combining these trace element features with the positive zircon εHf(t) values (+1.3 to +6.6), we propose that the mafic rocks were likely derived from partial melting of a previously metasomatized lithospheric mantle. In the primitive mantle-normalized diagram, the felsic rocks display uniform patterns enriched in LILE but depleted in Nb and Ta, similar to those of lower crust. Furthermore, their strongly fractionated REE ((La/Yb)N = 15.24-61.20), lower HREE concentrations (Yb = 0.47-1.65 ppm) and positive zircon εHf(t) values (+1.6 to +5.3) suggest that they were derived from partial melting of the lower crust with garnet in the residue. This coeval occurrence of metasomatized mantle-derived mafic magmas and potassic felsic magmas from different source regions reflects an intracontinental extensional setting during the late Neoarchean to earliest Paleoproterozoic following the cratonization of the NCC. Our new data, combined with previous

  19. Guandishan Granitoids of the Paleoproterozoic Lüliang Metamorphic Complex in the Trans-North China Orogen:SHRIMP Zircon Ages,Petrogenesis and Tectonic Implications

    Institute of Scientific and Technical Information of China (English)

    LIU Shuwen; LI Qiugen; LIU Chaohui; LU Yongjun; ZHANG Fan

    2009-01-01

    The Paleoproterozoic Liiliang Metamorphic Complex(PLMC)is situated in the middle segment of the western margin of the Trans-North China Orogen(TNCO),North China Craton(NCC). As the most important Iithological assemblages in the southern part of the PLMC,Guandishan granitoids consist of early gneissic tonalities,granodiorites and gneissic monzogranites,and younger gneissic to massive monzogranites.Petrochemical features reveal that the early gneissic tonalities and granodiorites belong to the medium-K calc-alkaline series;the early gneissic monzogranites are transitional from high-K caic-alkaline to the shoshonite series;the younger gneissic to massive monzogranites belong to the high-k calc-alkaline series,and all rocks are characterized by right-declined REE patterns and negative Nb,Ta,Sr,P,and Ti anomalies in the primitive mantle normalized spidergrams.SHRIMP zircon U-Pb isotopic dating reveal that the early gneissic tonalities and granodiorites formed at ~2.17 Ga,the early gneissic monzogranites at ~2.06 Ga,and the younger gneissic to massive monzogranites at ~1.84 Ga.Sm-Nd isotopic data show that the early gneissic tonalities and granodiorites have εNd(t) values of +0.48 to -3.19 with Nd-depleted mantle model ages (TDM)of 2.76-2.47 Ga,and early gneissic monzogranites have εNd(t) values of -0.53 to -2.51 with TDM of 2.61-2.43 Ga,and the younger gneissic monzogranites have εNd(t) values of -6.41 to -2.78 with a TDM of 2.69-2.52 Ga.These geochemical and isotopic data indicate that the early gneissic tonalities,granodiorites,and monzogranites were derived from the partial melting of metamorphosed basaltic and pelitic rocks,respectively,in a continental arc setting.The younger gneissic to massive monzogranites were derived by partial melting of metamorphosed greywackes within the continental crust.Combined with previously regional data,we suggest that the PaleOproterOzOic granitoid magmatism in the Guandishan granitoids of the PLMC may provide the best

  20. Return of the cycad hypothesis - does the amyotrophic lateral sclerosis/parkinsonism dementia complex (ALS/PDC) of Guam have new implications for global health?

    Science.gov (United States)

    Ince, P G; Codd, G A

    2005-08-01

    Recently published work provides evidence in support of the cycad hypothesis for Lytico--Bodig, the Guamanian amyotrophic lateral sclerosis/parkinsonism dementia complex (ALS/PDC), based on a new understanding of Chamorro food practices, a cyanobacterial origin of beta-methylaminoalanine (BMAA) in cycad tissue, and a possible mechanism of biomagnification of this neurotoxic amino acid in the food chain. BMAA is one of two cycad chemicals with known neurotoxic properties (the other is cycasin, a proven developmental neurotoxin) among the many substances that exist in these highly poisonous plants, the seeds of which are used by Chamorros for food and medicine. The traditional diet includes the fruit bat, a species that feeds on cycad seed components and reportedly bioaccumulates BMAA. Plant and animal proteins provide a previously unrecognized reservoir for the slow release of this toxin. BMAA is reported in the brain tissue of Guam patients and early data suggest that some Northern American patients dying of Alzheimer's disease (AD) have detectable brain levels of BMAA. The possible role of cyanobacterial toxicity in sporadic neurodegenerative disease is therefore worthy of consideration. Recent neuropathology studies of ALS/PDC confirm understanding of this disorder as a 'tangle' disease, based on variable anatomical burden, and showing biochemical characteristics of 'AD-like' combined 3R and 4R tau species. This model mirrors the emerging view that other neurodegenerative disease spectra comprise clusters of related syndromes, owing to common molecular pathology, with variable anatomical distribution in the nervous system giving rise to different clinical phenotypes. Evidence for 'ubiquitin-only' inclusions in ALS/PDC is weak. Similarly, although there is evidence for alpha-synucleinopathy in ALS/PDC, the parkinsonian component of the disease is not caused by Lewy body disease. The spectrum of sporadic AD includes involvement of the substantia nigra and a high

  1. Influence des melanges complexes organiques sur le sort des dioxines et furanes: Implications dans le developpement de facteurs de caracterisation en analyse du cycle de vie

    Science.gov (United States)

    Taing, Eric

    The environmental fate of dioxins and furans, or polychlorodibenzo-p-dioxins and -furans (PCDD/Fs), leaching from wood poles treated with pentachlorophenol (PCP) oil is modified by the presence of oil. Interactions between co-contaminants, which also exist for other pollutants within the mixtures, were shown in the specific context of risk analysis, but have never been taken into account for the generic context of life cycle assessment (LCA). This decision-making tool relies on characterization factors (CF) to estimate the potential impacts of an emitted amount of a pollutant in different impact categories such as aquatic ecotoxicity and human toxicity. For these two impact categories, CFs are calculated from a cause-effect chain that models the environmental fate, exposure and effects of the pollutant (represented by a matrix of fate FF, exposure XF and effect EF, respectively), meaning that a modification of PCDD/Fs fate induces a change in PCDD/Fs CFs. The research question is therefore as follows: In life cycle impact assessment (LCIA), to what extent would the potential impacts of PCDD/Fs on aquatic ecotoxicity and human toxicity change when taking into account the influence of a complex organic mixture on PCDD/Fs fate?. Thus, the main objective is to develop CFs of PCDD/Fs when their fate is influenced by PCP oil and compare them with the CFs of PCDD/Fs without oil for the aquatic ecotoxicity and human toxicity impact categories. A mathematic approach is established to determine the new environmental distribution of PCDD/Fs in the presence of oil and a new FF' matrix is calculated from this new distribution to obtain new CFs' integrating oil influence. FF' and CF' are then compared to FF and CF of PCDD/Fs without the oil. Finally, potential (eco)toxic impacts of the PCDD/F Canadian emissions are calculated with the new CFs' of PCDD/Fs in presence of oil. By only focusing on the results for an emission into air, freshwater and natural soil on a continental

  2. Crystal structure of the ternary complex of the catalytic domain of human phenylalanine hydroxylase with tetrahydrobiopterin and 3-(2-thienyl)-L-alanine, and its implications for the mechanism of catalysis and substrate activation.

    Science.gov (United States)

    Andersen, Ole Andreas; Flatmark, Torgeir; Hough, Edward

    2002-07-26

    Phenylalanine hydroxylase catalyzes the stereospecific hydroxylation of L-phenylalanine, the committed step in the degradation of this amino acid. We have solved the crystal structure of the ternary complex (hPheOH-Fe(II).BH(4).THA) of the catalytically active Fe(II) form of a truncated form (DeltaN1-102/DeltaC428-452) of human phenylalanine hydroxylase (hPheOH), using the catalytically active reduced cofactor 6(R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH(4)) and 3-(2-thienyl)-L-alanine (THA) as a substrate analogue. The analogue is bound in the second coordination sphere of the catalytic iron atom with the thiophene ring stacking against the imidazole group of His285 (average interplanar distance 3.8A) and with a network of hydrogen bonds and hydrophobic contacts. Binding of the analogue to the binary complex hPheOH-Fe(II).BH(4) triggers structural changes throughout the entire molecule, which adopts a slightly more compact structure. The largest change occurs in the loop region comprising residues 131-155, where the maximum r.m.s. displacement (9.6A) is at Tyr138. This loop is refolded, bringing the hydroxyl oxygen atom of Tyr138 18.5A closer to the iron atom and into the active site. The iron geometry is highly distorted square pyramidal, and Glu330 adopts a conformation different from that observed in the hPheOH-Fe(II).BH(4) structure, with bidentate iron coordination. BH(4) binds in the second coordination sphere of the catalytic iron atom, and is displaced 2.6A in the direction of Glu286 and the iron atom, relative to the hPheOH-Fe(II).BH(4) structure, thus changing its hydrogen bonding network. The active-site structure of the ternary complex gives new insight into the substrate specificity of the enzyme, notably the low affinity for L-tyrosine. Furthermore, the structure has implications both for the catalytic mechanism and the molecular basis for the activation of the full-length tetrameric enzyme by its substrate. The large conformational change, moving

  3. Structural modeling of HLA-B*1502/peptide/carbamazepine/T-cell receptor complex architecture: implication for the molecular mechanism of carbamazepine-induced Stevens-Johnson syndrome/toxic epidermal necrolysis.

    Science.gov (United States)

    Zhou, Peng; Zhang, Shilei; Wang, Yewang; Yang, Chao; Huang, Jian

    2016-08-01

    Drug-induced adverse reactions are a significant problem in healthcare worldwide and are estimated to cost billions of dollars annually in the United States. A portion of such reactions is observed to strongly associate with certain human leukocyte antigen (HLA) alleles; one of the strongest associations is the HLA-B*1502 protein with carbamazepine (CBZ)-induced Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) - the odds ratio value can even be higher than one thousand. The particularly strong association in CBZ-induced SJS/TEN suggests that the HLA-B*1502 is not only a genetic marker but also a participant in the pathogenesis of the disease. In the current study, we attempt to computationally model the atomic-level structure of the complete HLA-B*1502/peptide/CBZ/T-cell receptor (TCR) complex architecture based on prior knowledge obtained from epidemiological investigations as well as in vitro and in vivo assays. The model tells a different story about the molecular mechanism of CBZ-induced SJS/TEN from that previously reported for abacavir (ABC)-induced hypersensitivity (HSR); the CBZ molecule is located at the interface between HLA-B*1502/peptide and TCR, directly contacts the P3-P6 residues of antigen peptide, and bound within a pocket region encompassed by two TCR CDR3 fingers. Molecular dynamics simulation and binding energy analysis further reveal that the CBZ shows considerably high affinity to TCR over HLA-B*1502/peptide, which can tightly interact with the former rather than the latter. From the model, two hypotheses are proposed that can well explain most previous observations and are expected to guide next wet-lab experiments. This study could help to promote our understanding of the molecular mechanism and pathological implication underlying CBZ-induced SJS/TEN.

  4. Carney Complex

    Science.gov (United States)

    ... Types of Cancer > Carney Complex Request Permissions Carney Complex Approved by the Cancer.Net Editorial Board , 11/2015 What is Carney complex? Carney complex is a hereditary condition associated with: ...

  5. Comments on Holographic Complexity

    CERN Document Server

    Carmi, Dean; Rath, Pratik

    2016-01-01

    We study two recent conjectures for holographic complexity: the complexity=action conjecture and the complexity=volume conjecture. In particular, we examine the structure of the UV divergences appearing in these quantities, and show that the coefficients can be written as local integrals of geometric quantities in the boundary. We also consider extending these conjectures to evaluate the complexity of the mixed state produced by reducing the pure global state to a specific subregion of the boundary time slice. The UV divergences in this subregion complexity have a similar geometric structure, but there are also new divergences associated with the geometry of the surface enclosing the boundary region of interest. We discuss possible implications arising from the geometric nature of these UV divergences.

  6. Ecological thinking, education and complexity

    OpenAIRE

    Karol Herian

    2008-01-01

    The article reflects contemporary discussions on formation of ecological thinking and educational theory and praxis, all of which is related to the development of complex sciences - from two points of view: The first deals with ecological thinking with regard to meta-scientific implications of the disciplines dealing with organized complexity; the second concentrates on the relevance and impact of complexity science for transformation processes in the field of education (paradigms and institu...

  7. Complex Beauty

    OpenAIRE

    Franceschet, Massimo

    2014-01-01

    Complex systems and their underlying convoluted networks are ubiquitous, all we need is an eye for them. They pose problems of organized complexity which cannot be approached with a reductionist method. Complexity science and its emergent sister network science both come to grips with the inherent complexity of complex systems with an holistic strategy. The relevance of complexity, however, transcends the sciences. Complex systems and networks are the focal point of a philosophical, cultural ...

  8. Complexity explained

    CERN Document Server

    Erdi, Peter

    2008-01-01

    This book explains why complex systems research is important in understanding the structure, function and dynamics of complex natural and social phenomena. Readers will learn the basic concepts and methods of complex system research.

  9. Bucolic Complexes

    CERN Document Server

    Brešar, Bostjan; Chepoi, Victor; Gologranc, Tanja; Osajda, Damian

    2012-01-01

    In this article, we introduce and investigate bucolic complexes, a common generalization of systolic complexes and of CAT(0) cubical complexes. This class of complexes is closed under Cartesian products and amalgamations over some convex subcomplexes. We study various approaches to bucolic complexes: from graph-theoretic and topological viewpoints, as well as from the point of view of geometric group theory. Bucolic complexes can be defined as locally-finite simply connected prism complexes satisfying some local combinatorial conditions. We show that bucolic complexes are contractible, and satisfy some nonpositive-curvature-like properties. In particular, we prove a version of the Cartan-Hadamard theorem, the fixed point theorem for finite group actions, and establish some results on groups acting geometrically on such complexes. We also characterize the 1-skeletons (which we call bucolic graphs) and the 2-skeletons of bucolic complexes. In particular, we prove that bucolic graphs are precisely retracts of Ca...

  10. Philosophy of complex systems

    CERN Document Server

    2011-01-01

    The domain of nonlinear dynamical systems and its mathematical underpinnings has been developing exponentially for a century, the last 35 years seeing an outpouring of new ideas and applications and a concomitant confluence with ideas of complex systems and their applications from irreversible thermodynamics. A few examples are in meteorology, ecological dynamics, and social and economic dynamics. These new ideas have profound implications for our understanding and practice in domains involving complexity, predictability and determinism, equilibrium, control, planning, individuality, responsibility and so on. Our intention is to draw together in this volume, we believe for the first time, a comprehensive picture of the manifold philosophically interesting impacts of recent developments in understanding nonlinear systems and the unique aspects of their complexity. The book will focus specifically on the philosophical concepts, principles, judgments and problems distinctly raised by work in the domain of comple...

  11. Progress in Computational Complexity Theory

    Institute of Scientific and Technical Information of China (English)

    Jin-Yi Cai; Hong Zhu

    2005-01-01

    We briefly survey a number of important recent achievements in Theoretical Computer Science (TCS), especially Computational Complexity Theory. We will discuss the PCP Theorem, its implications to inapproximability on combinatorial optimization problems; space bounded computations, especially deterministic logspace algorithm for undirected graph connectivity problem; deterministic polynomial-time primality test; lattice complexity, worst-case to average-case reductions;pseudorandomness and extractor constructions; and Valiant's new theory of holographic algorithms and reductions.

  12. Communication complexity and information complexity

    Science.gov (United States)

    Pankratov, Denis

    Information complexity enables the use of information-theoretic tools in communication complexity theory. Prior to the results presented in this thesis, information complexity was mainly used for proving lower bounds and direct-sum theorems in the setting of communication complexity. We present three results that demonstrate new connections between information complexity and communication complexity. In the first contribution we thoroughly study the information complexity of the smallest nontrivial two-party function: the AND function. While computing the communication complexity of AND is trivial, computing its exact information complexity presents a major technical challenge. In overcoming this challenge, we reveal that information complexity gives rise to rich geometrical structures. Our analysis of information complexity relies on new analytic techniques and new characterizations of communication protocols. We also uncover a connection of information complexity to the theory of elliptic partial differential equations. Once we compute the exact information complexity of AND, we can compute exact communication complexity of several related functions on n-bit inputs with some additional technical work. Previous combinatorial and algebraic techniques could only prove bounds of the form theta( n). Interestingly, this level of precision is typical in the area of information theory, so our result demonstrates that this meta-property of precise bounds carries over to information complexity and in certain cases even to communication complexity. Our result does not only strengthen the lower bound on communication complexity of disjointness by making it more exact, but it also shows that information complexity provides the exact upper bound on communication complexity. In fact, this result is more general and applies to a whole class of communication problems. In the second contribution, we use self-reduction methods to prove strong lower bounds on the information

  13. Autism in Tuberous Sclerosis Complex.

    Science.gov (United States)

    Gutierrez, Griselda C.; Smalley, Susan L.; Tanguay, Peter E.

    1998-01-01

    The frequency and clinical presentation of autism in 28 probands with tuberous sclerosis complex (TSC), an autosomal dominant disorder characterized by benign tissue growths and a high frequency of seizure disorders and mental retardation, was examined. Eight probands met criteria for autism. Implications for understanding the association of…

  14. 2.6 Ga Gabbro-tonalite-trondhjemite Complex and 2.5 Ga Potassic Granite in Quruqtagh. Geochronology, Geochemistry and Their Implications on the Early Precambrian Tectonic Evolution of the Tarim Block, NW China

    Institute of Scientific and Technical Information of China (English)

    ZHANG Chuan-lin; LI Xian-hua; LI Zheng-xiang; YE Hai-min

    2008-01-01

    @@ Field observation, ages and geochemistry of the Neoarchaean intrusive complex in Quruqtagh in northern mar-gin of the Tarim Block, NW China, are reported to decipher the Neoarchaean tectonic evolution of the Tarim Block.

  15. Practical implications of 'postmodern philosophy'

    Directory of Open Access Journals (Sweden)

    Savić Mile V.

    2002-01-01

    Full Text Available The article examines the implications of the discourse about postmodernity. Postmodernity is analyzed as a complex discursive figure. Within the discourse about postmodernity three levels are distinguished: the postmodern condition, postmodernism, and reflection of the postmodern condition. Special attention is paid to globalization and the problem of the enforcement of modern projects in East-European societies, particularly Serbia. These societies are termed object-societies, while their modification of modernity is called eastmodernity. The author's answer to the complexity of the postmodern condition is a conception of the politics of subsistence.

  16. Complexity Plots

    KAUST Repository

    Thiyagalingam, Jeyarajan

    2013-06-01

    In this paper, we present a novel visualization technique for assisting the observation and analysis of algorithmic complexity. In comparison with conventional line graphs, this new technique is not sensitive to the units of measurement, allowing multivariate data series of different physical qualities (e.g., time, space and energy) to be juxtaposed together conveniently and consistently. It supports multivariate visualization as well as uncertainty visualization. It enables users to focus on algorithm categorization by complexity classes, while reducing visual impact caused by constants and algorithmic components that are insignificant to complexity analysis. It provides an effective means for observing the algorithmic complexity of programs with a mixture of algorithms and black-box software through visualization. Through two case studies, we demonstrate the effectiveness of complexity plots in complexity analysis in research, education and application. © 2013 The Author(s) Computer Graphics Forum © 2013 The Eurographics Association and Blackwell Publishing Ltd.

  17. The production and crystallization of the human leukocyte antigen class II molecules HLA-DQ2 and HLA-DQ8 complexed with deamidated gliadin peptides implicated in coeliac disease

    Energy Technology Data Exchange (ETDEWEB)

    Henderson, Kate N.; Reid, Hugh H.; Borg, Natalie A.; Broughton, Sophie E.; Huyton, Trevor [The Protein Crystallography Unit, Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton, Victoria 3800 (Australia); Anderson, Robert P. [Autoimmunity and Transplantation Division, Walter and Eliza Hall Institute, 1G Royal Parade, Parkville, Victoria 3050 (Australia); Department of Gastroenterology, The Royal Melbourne Hospital, Grattan Street, Parkville, Victoria 3050 (Australia); McCluskey, James [Department of Microbiology and Immunology, University of Melbourne, Parkville, Victoria 3010 (Australia); Rossjohn, Jamie, E-mail: jamie.rossjohn@med.monash.edu.au [The Protein Crystallography Unit, Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton, Victoria 3800 (Australia)

    2007-12-01

    The production and crystallization of human leukocyte antigen class II molecules HLA-DQ2 and HLA-DQ8 in complex with deamidated gliadin peptides is reported. Crystals of HLA-DQ2{sup PQPELPYPQ} diffracted to 3.9 Å, while the HLA-DQ8{sup EGSFQPSQE} crystals diffracted to 2.1 Å, allowing structure determination by molecular replacement. The major histocompatibility complex (MHC) class II molecules HLA-DQ2 and HLA-DQ8 are key risk factors in coeliac disease, as they bind deamidated gluten peptides that are subsequently recognized by CD4{sup +} T cells. Here, the production and crystallization of both HLA-DQ2 and HLA-DQ8 in complex with the deamidated gliadin peptides DQ2 α-I (PQPELPYPQ) and DQ8 α-I (EGSFQPSQE), respectively, are reported.

  18. U-Pb zircon ages and geochemistry of the Wuguan complex in the Qinling orogen, central China: Implications for the late Paleozoic tectonic evolution between the Sino-Korean and Yangtze cratons

    Science.gov (United States)

    Chen, Longyao; Liu, Xiaochun; Qu, Wei; Hu, Juan

    2014-04-01

    The tectonic evolution of the Qinling orogen, central China, is the key to understanding the assembly of the Sino-Korean and Yangtze cratons. The Wuguan complex, between the early Paleozoic North Qinling and Mesozoic South Qinling tectonic belts, can provide important constraints on the late Paleozoic evolutionary processes in the Qinling orogen. U-Pb zircon analyses, using laser ablation-multicollector-inductively coupled plasma-mass spectrometry, reveal protolith ages of 446 ± 2 Ma for a garnet amphibolite, 368 ± 3 Ma for a meta-andesite, and 351 ± 2 Ma for a mylonitized granitic dike from the Wuguan complex. Elemental geochemistry indicates typical island arc affinities for all the above rocks, but some amphibolites of unknown age have E-MORB signatures. Detrital zircons from a metaquartzite have an age spectrum with a major peak at 462 Ma, two subordinate peaks at 828 and 446 Ma, and a youngest weighted mean age of 423 ± 5 Ma. This suggests that at least some of metasedimentary rocks from the Wuguan complex belong to the part of the Devonian turbidite sequence of the Liuling Group, which was deposited in a fore-arc basin along the southern accreted margin of the Sino-Korean craton, whereas the late Ordovician precursors of the amphibolite might be derived from the Danfeng Group. The occurrence of late Devonian-early Carboniferous arc-related rocks in the Wuguan complex implies penecontemporaneous oceanic subduction, and therefore the Paleo-Qinling Ocean was not finally closed until the early Carboniferous. On the other hand, metamorphic zircon grains from two amphibolites yielded ages of 321 ± 2 and 318 ± 3 Ma. Hence, the Wuguan complex in the Qinling orogen and the Guishan complex in the Tongbai orogen constitute a medium-pressure Carboniferous metamorphic belt that is more than 500 km long, and which was formed in the hanging wall of a subduction zone.

  19. Geochemistry of anorthositic differentiated sills in the Archean (~ 2970 Ma) Fiskenæsset Complex, SW Greenland: Implications for parental magma compositions, geodynamic setting, and secular heat flow in arcs

    Science.gov (United States)

    Polat, Ali; Fryer, Brian J.; Appel, Peter W. U.; Kalvig, Per; Kerrich, Robert; Dilek, Yildirim; Yang, Zhaoping

    2011-04-01

    The Fiskenæsset Complex, SW Greenland, is one of the best preserved layered Archean intrusions in the world, consisting of an association of ca. 550-meter-thick anorthosite, leucogabbro, gabbro, and ultramafic rocks (dunite, peridotite, pyroxenite, and hornblendite). Despite poly-phase deformation and amphibolite to granulite facies metamorphism, primary cumulate textures and igneous layering are well-preserved in the complex. This study reports new major and trace element data for three variably thick (1 to 5 m) differentiated (dunite, through peridotite, pyroxenite, gabbro leucogabbro, to anorthosite) sequences (Sequences 1, 2 and 3) in the Sinarssuk area of the Fiskenæsset region. On several variation diagrams, samples from these sequences plot along a well-defined liquid line of descent, consistent with in situ fractional crystallization. The average chemical compositions of these sequences are used to constrain their approximate parental magma compositions. Petrographic observations and geochemical data suggest that Sequences 2 and 3 solidified from evolved magmas that underwent olivine fractionation prior to their intrusion. In contrast, Sequence 1 appears to have been derived from a near-primary parental magma (SiO 2 = 43 wt.%, MgO = 20 wt.%, Al 2O 3 = 16 wt.%, CaO = 9.3 wt.%, Ni = 840 ppm, Mg-number = 80). The trace element patterns of this parental magma are comparable to those of Phanerozoic boninites, consistent with a supra-subduction zone geodynamic setting. If the relative thickness of ultramafic layers, the sum of dunite, peridotite and pyroxenite layers, in differentiated sequences is taken as an analog for the original complex emplaced into Archean oceanic crust, the Fiskenæsset Complex might have had a minimum thickness of 1000 m, with a 500 m thick ultramafic unit at the bottom. The thickness of the ultramafic unit in the preserved complex is less than 50 m, suggesting that more than 90% of the original ultramafic unit was either delaminated

  20. Computational Complexity

    Directory of Open Access Journals (Sweden)

    J. A. Tenreiro Machado

    2017-02-01

    Full Text Available Complex systems (CS involve many elements that interact at different scales in time and space. The challenges in modeling CS led to the development of novel computational tools with applications in a wide range of scientific areas. The computational problems posed by CS exhibit intrinsic difficulties that are a major concern in Computational Complexity Theory. [...

  1. Complex narratives

    NARCIS (Netherlands)

    Simons, J.

    2008-01-01

    This paper brings together narratology, game theory, and complexity theory to untangle the intricate nature of complex narratives in contemporary cinema. It interrogates the different terms - forking-path narratives, mind-game films, modular narratives, multiple-draft films, database narratives, puz

  2. Complex odontoma.

    Science.gov (United States)

    Preetha, A; Balikai, Bharati S; Sujatha, D; Pai, Anuradha; Ganapathy, K S

    2010-01-01

    Odontomas are hamartomatous lesions or malformations composed of mature enamel, dentin, and pulp. They may be compound or complex, depending on the extent of morphodifferentiation or their resemblance to normal teeth. The etiology of odontoma is unknown, although several theories have been proposed. This article describes a case of a large infected complex odontoma in the residual mandibular ridge, resulting in considerable mandibular expansion.

  3. Simplifying complexity

    NARCIS (Netherlands)

    Leemput, van de I.A.

    2016-01-01

    In this thesis I use mathematical models to explore the properties of complex systems ranging from microbial nitrogen pathways and coral reefs to the human state of mind. All are examples of complex systems, defined as systems composed of a number of interconnected parts, where the systemic behavior

  4. Mammalian NADH:ubiquinone oxidoreductase (Complex I) and nicotinamide nucleotide transhydrogenase (Nnt) together regulate the mitochondrial production of H(2)O (2)-Implications for their role in disease, especially cancer

    NARCIS (Netherlands)

    Albracht, S.P.J.; Meijer, A.J.; Rydström, J.

    2011-01-01

    Mammalian NADH:ubiquinone oxidoreductase (Complex I) in the mitochondrial inner membrane catalyzes the oxidation of NADH in the matrix. Excess NADH reduces nine of the ten prosthetic groups of the enzyme in bovine-heart submitochondrial particles with a rate of at least 3,300 s(-1). This results in

  5. Mammalian NADH:ubiquinone oxidoreductase (Complex I) and nicotinamide nucleotide transhydrogenase (Nnt) together regulate the mitochondrial production of H₂O₂--implications for their role in disease, especially cancer

    NARCIS (Netherlands)

    Albracht, S.P.J.; Meijer, A.J.; Rydström, J.

    2011-01-01

    Mammalian NADH:ubiquinone oxidoreductase (Complex I) in the mitochondrial inner membrane catalyzes the oxidation of NADH in the matrix. Excess NADH reduces nine of the ten prosthetic groups of the enzyme in bovine-heart submitochondrial particles with a rate of at least 3,300 s−1. This results in an

  6. On System Complexity: Identification, Measurement, and Management

    OpenAIRE

    Casti, J.L.

    1985-01-01

    Attempts to axiomatize and formalize system complexity all leave a feeling of basic incompleteness and a sense of failure to grasp important aspects of the problem. This paper examines some of the root causes of these failures and outlines a framework for the consideration of complexity as an implicate, rather than explicate, property of systems in interaction.

  7. Thoughts on a Pedagogy OF Complexity

    Science.gov (United States)

    Byrne, David

    2014-01-01

    There is now a developed and extensive literature on the implications of the "complexity frame of reference" (Castellani & Hafferty, 2009) for education in general and pedagogy in particular. This includes a wide range of interesting contributions which consider how complexity can inform, inter alia, research on educational systems…

  8. Complex variables

    CERN Document Server

    Fisher, Stephen D

    1999-01-01

    The most important topics in the theory and application of complex variables receive a thorough, coherent treatment in this introductory text. Intended for undergraduates or graduate students in science, mathematics, and engineering, this volume features hundreds of solved examples, exercises, and applications designed to foster a complete understanding of complex variables as well as an appreciation of their mathematical beauty and elegance. Prerequisites are minimal; a three-semester course in calculus will suffice to prepare students for discussions of these topics: the complex plane, basic

  9. Managing Complexity

    DEFF Research Database (Denmark)

    Maylath, Bruce; Vandepitte, Sonia; Minacori, Patricia

    2013-01-01

    This article discusses the largest and most complex international learning-by-doing project to date- a project involving translation from Danish and Dutch into English and editing into American English alongside a project involving writing, usability testing, and translation from English into Dut...... and into French. The complexity of the undertaking proved to be a central element in the students' learning, as the collaboration closely resembles the complexity of international documentation workplaces of language service providers. © Association of Teachers of Technical Writing....

  10. Lecithin Complex

    African Journals Online (AJOL)

    yellow power was collected as polydatin-lecithin complex. ... performed on an Agilent 1260 HPLC system. The injection volume .... rabbits. Biomed. Pharmacother 2009; 63: 457-462. 4. Liu B, Du J, Zeng J, Chen C, Niu S. Characterization and.

  11. Evidence of recent deep magmatic activity at Cerro Bravo-Cerro Machín volcanic complex, central Colombia. Implications for future volcanic activity at Nevado del Ruiz, Cerro Machín and other volcanoes

    Science.gov (United States)

    Londono, John Makario

    2016-09-01

    In the last nine years (2007-2015), the Cerro Bravo-Cerro Machín volcanic complex (CBCMVC), located in central Colombia, has experienced many changes in volcanic activity. In particular at Nevado del Ruiz volcano (NRV), Cerro Machin volcano (CMV) and Cerro Bravo (CBV) volcano. The recent activity of NRV, as well as increasing seismic activity at other volcanic centers of the CBCMVC, were preceded by notable changes in various geophysical and geochemical parameters, that suggests renewed magmatic activity is occurring at the volcanic complex. The onset of this activity started with seismicity located west of the volcanic complex, followed by seismicity at CBV and CMV. Later in 2010, strong seismicity was observed at NRV, with two small eruptions in 2012. After that, seismicity has been observed intermittently at other volcanic centers such as Santa Isabel, Cerro España, Paramillo de Santa Rosa, Quindío and Tolima volcanoes, which persists until today. Local deformation was observed from 2007 at NRV, followed by possible regional deformation at various volcanic centers between 2011 and 2013. In 2008, an increase in CO2 and Radon in soil was observed at CBV, followed by a change in helium isotopes at CMV between 2009 and 2011. Moreover, SO2 showed an increase from 2010 at NRV, with values remaining high until the present. These observations suggest that renewed magmatic activity is currently occurring at CBCMVC. NRV shows changes in its activity that may be related to this new magmatic activity. NRV is currently exhibiting the most activity of any volcano in the CBCMVC, which may be due to it being the only open volcanic system at this time. This suggests that over the coming years, there is a high probability of new unrest or an increase in volcanic activity of other volcanoes of the CBCMVC.

  12. Configuration Control in the Synthesis of Homo- and Heteroleptic Bis(oxazolinylphenolato/thiazolinylphenolato) Chelate Ligand Complexes of Oxorhenium(V): Isomer Effect on Ancillary Ligand Exchange Dynamics and Implications for Perchlorate Reduction Catalysis.

    Science.gov (United States)

    Liu, Jinyong; Wu, Dimao; Su, Xiaoge; Han, Mengwei; Kimura, Susana Y; Gray, Danielle L; Shapley, John R; Abu-Omar, Mahdi M; Werth, Charles J; Strathmann, Timothy J

    2016-03-01

    This study develops synthetic strategies for N,N-trans and N,N-cis Re(O)(LO-N)2Cl complexes and investigates the effects of the coordination spheres and ligand structures on ancillary ligand exchange dynamics and catalytic perchlorate reduction activities of the corresponding [Re(O)(LO-N)2](+) cations. The 2-(2'-hydroxyphenyl)-2-oxazoline (Hhoz) and 2-(2'-hydroxyphenyl)-2-thiazoline (Hhtz) ligands are used to prepare homoleptic N,N-trans and N,N-cis isomers of both Re(O)(hoz)2Cl and Re(O)(htz)2Cl and one heteroleptic N,N-trans Re(O)(hoz)(htz)Cl. Selection of hoz/htz ligands determines the preferred isomeric coordination sphere, and the use of substituted pyridine bases with varying degrees of steric hindrance during complex synthesis controls the rate of isomer interconversion. The five corresponding [Re(O)(LO-N)2](+) cations exhibit a wide range of solvent exchange rates (1.4 to 24,000 s(-1) at 25 °C) and different LO-N movement patterns, as influenced by the coordination sphere of Re (trans/cis), the noncoordinating heteroatom on LO-N ligands (O/S), and the combination of the two LO-N ligands (homoleptic/heteroleptic). Ligand exchange dynamics also correlate with the activity of catalytic reduction of aqueous ClO4(-) by H2 when the Re(O)(LO-N)2Cl complexes are immobilized onto Pd/C. Findings from this study provide novel synthetic strategies and mechanistic insights for innovations in catalytic, environmental, and biomedical research.

  13. Geochemistry of the Late Neoproterozoic Hadb adh Dayheen ring complex, Central Arabian Shield: Implications for the origin of rare-metal-bearing post-orogenic A-type granites

    Science.gov (United States)

    Moghazi, A. M.; Harbi, H. M.; Ali, K. A.

    2011-11-01

    The Hadb adh Dayheen ring complex (HDRC), Central Arabian Shield, is an alkaline to peralkaline A-type granite complex. It consists of an inner core of monzogranite followed outward by porphyritic alkali feldspar granite (hornblende biotite granite and aegirine riebeckite granite). Field and textural observations indicate that the different granite types were separated from magma reservoir, at different stages, and emplaced at higher levels along pre-existing fractures. The geochemical characteristics indicate that their magma was most plausibly originated by partial melting of juvenile lower crust following collision between East and West Gondwana at the final stage of the Arabian Shield evolution. The alkali feldspar granites have high abundances of albite and fluorite and wide variation of HFSE and REE that indicate interaction with hydrothermal F-rich fluids. Although there are many geochemical, mineralogical and textural evidence of secondary metasomatic alteration superimposed on the granitic rocks, they show textural features such as the arrangement of albite inclusions along growth planes in quartz (snowball texture) and aegirine that indicate early magmatic crystallization of albite. Also, the strong linear positive correlation of Ta vs. Nb and Zr vs. Hf emphasize that the behavior and enrichment of Ta and Nb are largely controlled by magmatic processes. The events that can explain the evolution of these rocks are: (1) during magmatic evolution, F dissolved in the magma and lowered the crystallization temperature causing REE and HFSE to form complexes and thus behave as incompatible elements, (2) prolonged crystallization of the major mineral phases (quartz and feldspar) formed a late-stage magmatic fluid enriched in volatiles (H 2O, F) and trace elements, (3) accessory minerals crystallized from such a phase in the interstices between the major mineral phases, and (4) post-magmatic re-equilibration and formation of secondary albite (Na-metasomatism) has

  14. Zircon U-Pb geochronology, geochemistry and Sr-Nd-Pb isotopes from the metamorphic basement in the Wuhe Complex: Implications for Neoarchean active continental margin along the southeastern North China Craton and constraints on the petrogenesis of Mesozoic granitoids

    Directory of Open Access Journals (Sweden)

    Andong Wang

    2013-01-01

    Full Text Available We report zircon U-Pb geochronology, geochemistry and Sr-Nd-Pb isotope data from mafic granulites and garnet amphibolites of the Wuhe Complex in the southeastern margin of the North China Craton (NCC. In combination with previous data, our results demonstrate that these rocks represent fragments of the ancient lower crust, and have features similar to those of the granulite basement in the northern margin of the NCC. A detailed evaluation of the Pb isotope data shows that Pb isotopes cannot effectively distinguish the role of the Yangtze Craton basement from that of the NCC basement with regard to the source and generation of magmas, at least for southeastern NCC. The age data suggest that the protoliths of the granulites or amphibolites in the Wuhe Complex were most likely generated in Neoarchean and that these rocks were subjected to Paleoproterozoic (1.8–1.9 Ga high-pressure granulite facies metamorphism. This study also shows that the Precambrian metamorphic basement in the southeastern margin of the NCC might have formed in a tectonic setting characterized by a late Neoarchean active continental margin.

  15. High resolution seismic data coupled to Multibeam bathymetry of Stromboli island collected in the frame of the Stromboli geophysical experiment: implications with the marine geophysics and volcanology of the Aeolian Arc volcanic complex (Sicily, Southern Tyrrhenian sea, Italy).

    Science.gov (United States)

    Aiello, Gemma; Di Fiore, Vincenzo; Marsella, Ennio; Passaro, Salvatore

    2014-01-01

    New high resolution seismic data (Subbottom Chirp) coupled to high resolution Multibeam bathymetry collected in the frame of the Stromboli geophysical experiment aimed at recording active seismic data and tomography of the Stromboli Island are here presented. The Stromboli geophysical experiment has been already carried out based on onshore and offshore data acquisition in order to investigate the deep structure and the location of the magma chambers of the Stromboli volcano. A new detailed swath bathymetry of Stromboli Island is here shown and discussed to reconstruct an up-to-date morpho-bathymetry and marine geology of the area compared to the volcanologic setting of the Aeolian Arc volcanic complex. Due to its high resolution the new Digital Terrain Model of the Stromboli Island gives interesting information about the submerged structure of the volcano, particularly about the volcano-tectonic and gravitational processes involving the submarine flanks of the edifice. Several seismic units have been identified based on the geologic interpretation of Subbottom Chirp profiles recorded around the volcanic edifice and interpreted as volcanic acoustic basement pertaining to the volcano and overlying slide chaotic bodies emplaced during its complex volcano-tectonic evolution. They are related to the eruptive activity of Stromboli, mainly poliphasic and to regional geological processes involving the intriguing geology of the Aeolian Arc, a volcanic area still in activity and needing improved research interest.

  16. Complex analysis

    CERN Document Server

    Freitag, Eberhard

    2005-01-01

    The guiding principle of this presentation of ``Classical Complex Analysis'' is to proceed as quickly as possible to the central results while using a small number of notions and concepts from other fields. Thus the prerequisites for understanding this book are minimal; only elementary facts of calculus and algebra are required. The first four chapters cover the essential core of complex analysis: - differentiation in C (including elementary facts about conformal mappings) - integration in C (including complex line integrals, Cauchy's Integral Theorem, and the Integral Formulas) - sequences and series of analytic functions, (isolated) singularities, Laurent series, calculus of residues - construction of analytic functions: the gamma function, Weierstrass' Factorization Theorem, Mittag-Leffler Partial Fraction Decomposition, and -as a particular highlight- the Riemann Mapping Theorem, which characterizes the simply connected domains in C. Further topics included are: - the theory of elliptic functions based on...

  17. Zircon U-Pb and Lu-Hf isotopic and whole-rock geochemical constraints on the Lanhe and Heichashan Groups: Implications for the Paleoproterozoic tectonic basin evolution of the Lüliang Complex

    Science.gov (United States)

    Liu, Chaohui; Zhao, Guochun; Liu, Fulai; Shi, Jianrong; Ji, Lei; Liu, Pinghua; Yang, Hong; Liu, Lishuang; Wang, Wei; Tian, Zhonghua

    2016-10-01

    The Lüliang Complex is located at the western margin of the middle segment of the Trans-North China Orogen, along which the Western and Eastern Blocks collided to form the North China Craton. The complex mainly consists of metamorphosed granitic plutons and supracrustal rocks, of which the latter are subdivided into the Jiehekou, Lüliang, Yejishan, Lanhe and Heichashan Groups. The Lanhe Group is composed of meta-conglomerates, quartzites, and phyllites with minor meta-basalts, whereas the Heichashan Group consists of molasse-like meta-conglomerates and coarse-grained quartzites. Geochemistry of the Yejishan meta-sedimentary rocks indicates weak source weathering and dominantly chemical immature features, whereas the Lanhe and Heichashan samples display opposite features. U-Pb ages of detrital zircons from the Lanhe Groups yield four age peaks at ~ 2180 Ma, ~ 2370 Ma, ~ 2520 Ma and ~ 2700 Ma. The former three peaks coincide with ages of the Chijianling-Guandishan TTG gneisses (2199-2151 Ma) and meta-volcanic rocks from the Lüliang and Yejishan Groups (2213-2156 Ma), age of the Gaijiazhuang porphyritic gneisses (2375-2364 Ma) and age of the Yunzhongshan TTG gneisses (2499 Ma) respectively, whereas detrital zircons forming the oldest age peak were most likely derived from the early Neoarchean crust of the Eastern Block. For the Heichashan Group, the dominant 2.2-2.0 Ga detrital zircons were probably recycled from the underlying Jiehekou Group and the minority is directly derived from the early Paleoproterozoic granitoids in the Lüliang Complex. The youngest detrital zircon age peaks of ~ 2.17 Ga and ~ 1.82 Ga place maximum depositional ages on the Lanhe and Heichashan Groups respectively, whereas the local 1.81-1.79 Ga massive granites place constraint on their minimum depositional ages. Taking into account the lithostratigraphic features, provenance and formation ages, we suggest that the Lanhe Group formed in a shrinked remnant back-arc basin and the Heichashan

  18. Evolution of the Chilka Lake granulite complex, northern Eastern Ghats Belt, India: First evidence of ~ 780 Ma decompression of the deep crust and its implication on the India-Antarctica correlation

    Science.gov (United States)

    Bose, S.; Das, K.; Torimoto, J.; Arima, M.; Dunkley, D. J.

    2016-10-01

    High-grade para- and orthogneissic rocks near the Chilka Lake granulite complex, northern part of the Eastern Ghats Belt show complex structural and petrological history. Based on field and petrographic characters, five (M1-M5) metamorphic events could be identified. The earliest metamorphic event (M1) produced amphibolite grade mineral assemblage which produced the peak granulite (M2) assemblages at 900-950 °C, 8.5-9.0 kbar. The third metamorphic event caused decompression of the deeper crust up to 700-800 °C, 6.0-6.5 kbar. This was followed by cooling (M4) and subsequent thermal overprinting (M5). Fluid-composition during M3 was dominated by high-density CO2 and changed to low-density mixed CO2-H2O during the M3. Zircon U-Pb SHRIMP data suggest 781 ± 9 Ma age for M3 event. Texturally constrained monazite U-Th-Pb EPMA data, on the other hand, yield a group age of 988 ± 23 Ma from grain interior, which can signifies the age of M2 event. Few spots with younger dates in the range of 550-500 Ma are also noted. This interpretation changes the existing tectonothermal history of northern Eastern Ghats Belt. Our data show that the two adjacent crustal domains of the Eastern Ghats Belt show distinctly contrasting Neoproterozoic histories. While the central Domain 2 evolved through early anticlockwise P-T path culminating in ultrahigh temperature, the northern Domain 3 evolved through a clockwise P-T path. It appears that the Domain 3 was contiguous to East Antarctica and became part of the Eastern Ghats Belt during the assembly of Gondwana. The ca. 780 Ma decompression event in the northern Eastern Ghats Belt opens up new possibilities for interpreting the breakup of Rodinia.

  19. Sequence-dependent upstream DNA-RNA polymerase interactions in the open complex with lambdaPR and lambdaPRM promoters and implications for the mechanism of promoter interference.

    Science.gov (United States)

    Mangiarotti, Laura; Cellai, Sara; Ross, Wilma; Bustamante, Carlos; Rivetti, Claudio

    2009-01-23

    Upstream interactions of Escherichia coli RNA polymerase (RNAP) in an open promoter complex (RPo) formed at the P(R) and P(RM) promoters of bacteriophage lambda have been studied by atomic force microscopy. We demonstrate that the previously described 30-nm DNA compaction observed upon RPo formation at P(R) [Rivetti, C., Guthold, M. & Bustamante, C. (1999). Wrapping of DNA around the E. coli RNA polymerase open promoter complex. EMBO J., 18, 4464-4475.] is a consequence of the specific interaction of the RNAP with two AT-rich sequence determinants positioned from -36 to -59 and from -80 to -100. Likewise, RPos formed at P(RM) showed a specific contact between RNAP and the upstream DNA sequence. We further demonstrate that this interaction, which results in DNA wrapping against the polymerase surface, is mediated by the C-terminal domains of alpha-subunits (carboxy-terminal domain). Substitution of these AT-rich sequences with heterologous DNA reduces DNA wrapping but has only a small effect on the activity of the P(R) promoter. We find, however, that the frequency of DNA templates with both P(R) and P(RM) occupied by an RNAP significantly increases upon loss of DNA wrapping. These results suggest that alpha carboxy-terminal domain interactions with upstream DNA can also play a role in regulating the expression of closely spaced promoters. Finally, a model for a possible mechanism of promoter interference between P(R) and P(RM) is proposed.

  20. Identification of a novel polyfluorinated compound as a lead to inhibit the human enzymes aldose reductase and AKR1B10: structure determination of both ternary complexes and implications for drug design.

    Science.gov (United States)

    Cousido-Siah, Alexandra; Ruiz, Francesc X; Mitschler, André; Porté, Sergio; de Lera, Ángel R; Martín, María J; Manzanaro, Sonia; de la Fuente, Jesús A; Terwesten, Felix; Betz, Michael; Klebe, Gerhard; Farrés, Jaume; Parés, Xavier; Podjarny, Alberto

    2014-03-01

    Aldo-keto reductases (AKRs) are mostly monomeric enzymes which fold into a highly conserved (α/β)8 barrel, while their substrate specificity and inhibitor selectivity are determined by interaction with residues located in three highly variable external loops. The closely related human enzymes aldose reductase (AR or AKR1B1) and AKR1B10 are of biomedical interest because of their involvement in secondary diabetic complications (AR) and in cancer, e.g. hepatocellular carcinoma and smoking-related lung cancer (AKR1B10). After characterization of the IC50 values of both AKRs with a series of polyhalogenated compounds, 2,2',3,3',5,5',6,6'-octafluoro-4,4'-biphenyldiol (JF0064) was identified as a lead inhibitor of both enzymes with a new scaffold (a 1,1'-biphenyl-4,4'-diol). An ultrahigh-resolution X-ray structure of the AR-NADP(+)-JF0064 complex has been determined at 0.85 Å resolution, allowing it to be observed that JF0064 interacts with the catalytic residue Tyr48 through a negatively charged hydroxyl group (i.e. the acidic phenol). The non-competitive inhibition pattern observed for JF0064 with both enzymes suggests that this acidic hydroxyl group is also present in the case of AKR1B10. Moreover, the combination of surface lysine methylation and the introduction of K125R and V301L mutations enabled the determination of the X-ray crystallographic structure of the corresponding AKR1B10-NADP(+)-JF0064 complex. Comparison of the two structures has unveiled some important hints for subsequent structure-based drug-design efforts.

  1. [VGKC-complex antibodies].

    Science.gov (United States)

    Watanabe, Osamu

    2013-04-01

    Various antibodies are associated with voltage-gated potassium channels (VGKCs). Representative antibodies to VGKCs were first identified by radioimmunoassays using radioisotope-labeled alpha-dendrotoxin-VGKCs solubilized from rabbit brain. These antibodies were detected only in a proportion of patients with acquired neuromyotonia (Isaacs' syndrome). VGKC antibodies were also detected in patients with Morvan's syndrome and in those with a form of autoimmune limbic encephalitis. Recent studies indicated that the "VGKC" antibodies are mainly directed toward associated proteins (for example LGI-1 and CASPR-2) that complex with the VGKCs themselves. The "VGKC" antibodies are now commonly known as VGKC-complex antibodies. In general, LGI-1 antibodies are most commonly detected in patients with limbic encephalitis with syndrome of inappropriate secretion of antidiuretic hormone. CASPR-2 antibodies are present in the majority of patients with Morvan's syndrome. These patients develop combinations of CNS symptoms, autonomic dysfunction, and peripheral nerve hyperexcitability. Furthermore, VGKC-complex antibodies are tightly associated with chronic idiopathic pain. Hyperexcitability of nociceptive pathways has also been implicated. These antibodies may be detected in sera of some patients with neurodegenerative diseases (for example, amyotrophic lateral sclerosis and Creutzfeldt-Jakob disease).

  2. Complex Networks

    CERN Document Server

    Evsukoff, Alexandre; González, Marta

    2013-01-01

    In the last decade we have seen the emergence of a new inter-disciplinary field focusing on the understanding of networks which are dynamic, large, open, and have a structure sometimes called random-biased. The field of Complex Networks is helping us better understand many complex phenomena such as the spread of  deseases, protein interactions, social relationships, to name but a few. Studies in Complex Networks are gaining attention due to some major scientific breakthroughs proposed by network scientists helping us understand and model interactions contained in large datasets. In fact, if we could point to one event leading to the widespread use of complex network analysis is the availability of online databases. Theories of Random Graphs from Erdös and Rényi from the late 1950s led us to believe that most networks had random characteristics. The work on large online datasets told us otherwise. Starting with the work of Barabási and Albert as well as Watts and Strogatz in the late 1990s, we now know th...

  3. Complex chemistry with complex compounds

    Directory of Open Access Journals (Sweden)

    Eichler Robert

    2016-01-01

    Full Text Available In recent years gas-phase chemical studies assisted by physical pre-separation allowed for the investigation of fragile single molecular species by gas-phase chromatography. The latest success with the heaviest group 6 transactinide seaborgium is highlighted. The formation of a very volatile hexacarbonyl compound Sg(CO6 was observed similarly to its lighter homologues molybdenum and tungsten. The interactions of these gaseous carbonyl complex compounds with quartz surfaces were investigated by thermochromatography. Second-generation experiments are under way to investigate the intramolecular bond between the central metal atom of the complexes and the ligands addressing the influence of relativistic effects in the heaviest compounds. Our contribution comprises some aspects of the ongoing challenging experiments as well as an outlook towards other interesting compounds related to volatile complex compounds in the gas phase.

  4. Os and S isotope studies of ultramafic rocks in the Duke Island Complex, Alaska: variable degrees of crustal contamination of magmas in an arc setting and implications for Ni-Cu-PGE sulfide mineralization

    Science.gov (United States)

    Stifter, Eric C.; Ripley, Edward M.; Li, Chusi

    2016-10-01

    The Duke Island Complex is one of the several "Ural-Alaskan" intrusions of Cretaceous age that occur along the coast of SE Alaska. Significant quantities of magmatic Ni-Cu-PGE sulfide mineralization are locally found in the complex, primarily within olivine clinopyroxenites. Sulfide mineralization is Ni-poor, consistent with petrologic evidence which indicates that sulfide saturation was reached after extensive olivine crystallization. Olivine clinopyroxenites were intruded by magmas that produced sulfide-poor, adcumulate dunites. As part of a study to investigate the potential for Ni-rich sulfide mineralization in association with the dunites, a Re-Os and S isotope study of the dunites, as well as sulfide mineralization in the olivine clinopyroxenites, was initiated. Importantly, recent drilling in the complex identified the presence of sulfidic and carbonaceous country rocks that may have been involved in the contamination of magmas and generation of sulfide mineralization. γOs (110 Ma) values of two sulfidic country rocks are 1022 and 2011. δ34S values of the country rocks range from -2.6 to -16.1 ‰. 187Os/188Os ratios of sulfide minerals in the mineralization hosted by olivine clinopyroxenites are variable and high, with γOs (110 Ma) values between 151 and 2059. Extensive interaction with Re-rich sedimentary country rocks is indicated. In contrast, γOs (110 Ma) values of the dunites are significantly lower, ranging between 2 and 16. 187Os/188Os ratios increase with decreasing Os concentration. This inverse relation is similar to that shown by ultramafic rocks from several arc settings, as well as altered abyssal dunites and peridotites. The relation may be indicative of magma derivation from a sub-arc mantle that had experienced metasomatism via slab-derived fluids. Alternatively, the relation may be indicative of minor contamination of magma by crustal rocks with low Os concentrations but high 187Os/188Os ratios. A third alternative is that the low Os

  5. Select estrogens within the complex formulation of conjugated equine estrogens (Premarin® are protective against neurodegenerative insults: implications for a composition of estrogen therapy to promote neuronal function and prevent Alzheimer's disease

    Directory of Open Access Journals (Sweden)

    Brinton Roberta

    2006-03-01

    Full Text Available Abstract Background Results of the Women's Health Initiative Memory Study (WHIMS raised concerns regarding the timing and formulation of hormone interventions. Conjugated equine estrogens (CEE, used as the estrogen therapy in the WHIMS trial, is a complex formulation containing multiple estrogens, including several not secreted by human ovaries, as well as other biologically active steroids. Although the full spectrum of estrogenic components present in CEE has not yet been resolved, 10 estrogens have been identified. In the present study, we sought to determine which estrogenic components, at concentrations commensurate with their plasma levels achieved following a single oral dose of 0.625 mg CEE (the dose used in the WHIMS trial in women, are neuroprotective and whether combinations of those neuroprotective estrogens provide added benefit. Further, we sought, through computer-aided modeling analyses, to investigate the potential correlation of the molecular mechanisms that conferred estrogen neuroprotection with estrogen interactions with the estrogen receptor (ER. Results Cultured basal forebrain neurons were exposed to either β-amyloid25–35 or excitotoxic glutamate with or without pretreatment with estrogens followed by neuroprotection analyses. Three indicators of neuroprotection that rely on different aspects of neuronal damage and viability, LDH release, intracellular ATP level and MTT formazan formation, were used to assess neuroprotective efficacy. Results of these analyses indicate that the estrogens, 17α-estradiol, 17β-estradiol, equilin, 17α-dihydroequilin, equilinen, 17α-dihydroequilenin, 17β-dihydroequilenin, and Δ8,9-dehydroestrone were each significantly neuroprotective in reducing neuronal plasma membrane damage induced by glutamate excitotoxicity. Of these estrogens, 17β-estradiol and Δ8,9-dehydroestrone were effective in protecting neurons against β-amyloid25–35-induced intracellular ATP decline

  6. Youth and Youth Issues in the Perspective of Complexity Fdgar Modus Ideas, Methods, and Its Implications%复杂性视域中的青年与青年问题——埃德加·莫兰的思想、方法及其启示

    Institute of Scientific and Technical Information of China (English)

    田杰

    2012-01-01

    Complexity theory as a research method and a way of thinking has important significance to youthresearch. Edgar Morin's complex thought put forward some arguments in the concept of remodeling people, especially paid special attention to youth and youth issues and was deeply involved in, which directly introduced youth research to the visual domain of complexity. Young monkey, youth, youth class were the three interconnected concepts about youth issues raised by Morin which can be called the three "Youth Hypothesis". And the awareness of the implications of these values has a special revelation on youth research.%复杂性理论作为一种研究方法、思维方式对青年研究具有重要意义。埃德加·莫兰的复杂性思想在重塑人的概念方面所提出的某些观点,特别是其对青年和青年问题所给予的特别关注和深度介入,则直接将青年研究引入复杂性视域。青年猴、青春化、青少年阶级,是莫兰提出的关于青年问题的三个相互联结的概念,或可称之为三个“青年假说”,其中蕴涵的认识价值对青年研究有着特别的启示。

  7. Complex dynamics in nanosystems.

    Science.gov (United States)

    Ni, Xuan; Ying, Lei; Lai, Ying-Cheng; Do, Younghae; Grebogi, Celso

    2013-05-01

    Complex dynamics associated with multistability have been studied extensively in the past but mostly for low-dimensional nonlinear dynamical systems. A question of fundamental interest is whether multistability can arise in high-dimensional physical systems. Motivated by the ever increasing widespread use of nanoscale systems, we investigate a prototypical class of nanoelectromechanical systems: electrostatically driven Si nanowires, mathematically described by a set of driven, nonlinear partial differential equations. We develop a computationally efficient algorithm to solve the equations. Our finding is that multistability and complicated structures of basins of attraction are common types of dynamics, and the latter can be attributed to extensive transient chaos. Implications of these phenomena to device operations are discussed.

  8. Crystal structure of the complex mAb 17.2 and the C-terminal region of Trypanosoma cruzi P2β protein: implications in cross-reactivity.

    Directory of Open Access Journals (Sweden)

    Juan Carlos Pizarro

    2011-11-01

    Full Text Available Patients with Chronic Chagas' Heart Disease possess high levels of antibodies against the carboxyl-terminal end of the ribosomal P2ß protein of Trypanosoma cruzi (TcP2ß. These antibodies, as well as the murine monoclonal antibody (mAb 17.2, recognize the last 13 amino acids of TcP2ß (called the R13 epitope: EEEDDDMGFGLFD and are able to cross-react with, and stimulate, the ß1 adrenergic receptor (ß1-AR. Indeed, the mAb 17.2 was able to specifically detect human β1-AR, stably transfected into HEK cells, by flow cytometry and to induce repolarisation abnormalities and first degree atrioventricular conduction block after passive transfer to naïve mice. To study the structural basis of this cross-reactivity, we determined the crystal structure of the Fab region of the mAb 17.2 alone at 2.31 Å resolution and in complex with the R13 peptide at 1.89 Å resolution. We identified as key contact residues on R13 peptide Glu3, Asp6 and Phe9 as was previously shown by alanine scanning. Additionally, we generated a model of human β1-AR to elucidate the interaction with anti-R13 antibodies. These data provide an understanding of the molecular basis of cross-reactive antibodies induced by chronic infection with Trypanosoma cruzi.

  9. Structure of a novel shoulder-to-shoulder p24 dimer in complex with the broad-spectrum antibody A10F9 and its implication in capsid assembly.

    Directory of Open Access Journals (Sweden)

    Ying Gu

    Full Text Available Mature HIV-1 viral particles assemble as a fullerene configuration comprising p24 capsid hexamers, pentamers and dimers. In this paper, we report the X-ray crystal structures of the p24 protein from natural HIV-1 strain (BMJ4 in complex with Fab A10F9, which recognizes a conserved epitope in the C-terminal domain of the BMJ4 p24 protein. Our structures reveal a novel shoulder-to-shoulder p24 dimerization mode that is mediated by an S-S bridge at C177. Consistent with these structures, the shoulder-to-shoulder dimer that was obtained from the BMJ4 strain was also observed in p24 proteins from other strains by the introduction of a cysteine residue at position 177. The potential biological significance was further validated by the introduction of a C177A mutation in the BMJ4 strain, which then displays a low infectivity. Our data suggest that this novel shoulder-to-shoulder dimer interface trapped by this unique S-S bridge could represent a physiologically relevant mode of HIV-1 capsid assembly during virus maturation, although Cys residue itself may not be critical for HIV-I replication.

  10. Sequence-dependent upstream DNA-RNA polymerase interactions in the open complex with λPR λPRM promoters and implications for the mechanism of promoter interference

    Science.gov (United States)

    Mangiarotti, Laura; Cellai, Sara; Ross, Wilma; Bustamante, Carlos; Rivetti, Claudio

    2015-01-01

    The upstream interactions of Escherichia coli RNA polymerase in open complex (RPo) formed at the PR and PRM promoters of bacteriophage lambda, have been studied by atomic force microscopy (AFM). We demonstrate that the previously described 30 nm DNA compaction observed upon RPo formation at PR1 is a consequence of the specific interaction of the RNAP with two AT-rich sequence determinants positioned from −36 to −59 and from −80 to −100. Likewise, RPos formed at PRM showed a specific contact between the RNAP and the DNA sequence from −36 to −60. We further demonstrate that this interaction, which results in DNA wrapping against the polymerase surface, is mediated by the C-terminal domains of the alpha subunits (αCTD). Substitution of these AT-rich sequences with heterologous DNA reduces DNA wrapping but has little effect on the activity of the PR promoter. We find, however, that the frequency of DNA templates with both PR and PRM occupied by an RNAP significantly increases upon loss of DNA wrapping. These results suggest that αCTD interactions with upstream DNA can also play a role in regulating the expression of closely spaced promoters. Finally, a model for a possible mechanism of promoter interference between PR and PRM is proposed. PMID:19061900

  11. U-Pb (LA-ICPMS) zircon ages and Nd isotopes for granitoids of the Tamboril-Santa Quiteria Complex, Ceara Central Domain: implication for neoproterozoic syncollisional magmatism in north Borborema Province, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Costa, Felipe Grandjean da; Araujo, Carlos Eduardo Ganade de; Vasconcelos, Antonio Maurilio, E-mail: felipe.costa@cprm.gov.br, E-mail: caegeo@gmail.com, E-mail: maurilio.vasconcelos@cprm.gov.br [Servico Geologico do Brasil (CPRM), Fortaleza, CE (Brazil); Amaral, Wagner da Silva, E-mail: wamaral@ufc.br [Universidade Federal do Ceara (UFC), Fortaleza, CE (Brazil). Departamento de Geologia; Rodrigues, Joseneusa Brilhante, E-mail: joseneusa.rodrigues@cprm.gov.br [Servico Geologico do Brasil (CPRM), Brasilia, DF (Brazil)

    2013-06-15

    The Tamboril-Santa Quiteria Complex (TSQC) is one of the largest Neoproterozoic plutonic manifestations in the north Borborema Province (NE Brazil). It represents an anatectic/igneous association characterized by a number of magmatic pulses that occurred in the 650-610 Ma interval. In this paper, we present U-Pb (LA-MC-ICP-MS) zircon ages and Nd isotopes for quartz monzonite and quartz diorites of the southern part of TSQC. The quartz monzonite belong to a hybrid granitoid association, including monzonite, syenites and quartz syenites, all with abundant mafic magmatic enclaves. A quartz monzonite sample yielded a U-Pb zircon age of 634 {+-} 10 Ma and a TDM age of 2.69 Ga. The quartz diorites are much more homogeneous in composition and yielded a U-Pb zircon age of 618 {+-} 23 Ma and a TDM age of 2.19 Ga. The presence of coeval mantle-derived magmatism and diatexites (crustal anatexis) post-dating high-pressure metamorphism (ca. 650 Ma), and together with high-temperature metamorphism (ca. 630-610 Ma), suggests that this large magmatic manifestation evolved in a collisional setting, probably related to slab break off during the Western Gondwana amalgamation. (author)

  12. Managing Complexity

    Energy Technology Data Exchange (ETDEWEB)

    Chassin, David P.; Posse, Christian; Malard, Joel M.

    2004-08-01

    Physical analogs have shown considerable promise for understanding the behavior of complex adaptive systems, including macroeconomics, biological systems, social networks, and electric power markets. Many of today’s most challenging technical and policy questions can be reduced to a distributed economic control problem. Indeed, economically-based control of large-scale systems is founded on the conjecture that the price-based regulation (e.g., auctions, markets) results in an optimal allocation of resources and emergent optimal system control. This paper explores the state of the art in the use physical analogs for understanding the behavior of some econophysical systems and to deriving stable and robust control strategies for them. In particular we review and discussion applications of some analytic methods based on the thermodynamic metaphor according to which the interplay between system entropy and conservation laws gives rise to intuitive and governing global properties of complex systems that cannot be otherwise understood.

  13. The Influence of Complexation on Radionuclide Migration: A Theoretical Study

    DEFF Research Database (Denmark)

    Carlsen, L.; Nielsen, O.J.; Bo, P.

    1989-01-01

    that approaching zero complexation the effective retention approaches that of the more retarded species (the free metal ion), whereas the effective retention approached that of the less retarded species (the complex) for increased complexation. The implication for the distribution of radionuclides...

  14. Emplacement of the La Peña alkaline igneous complex, Mendoza, Argentina (33° S): Implications for the early Miocene tectonic regime in the retroarc of the Andes

    Science.gov (United States)

    Pagano, D. S.; Galliski, M. A.; Márquez-Zavalía, M. F.

    2014-03-01

    The La Peña alkaline complex (LPC) of Miocene age (18-19 Ma) lies on the eastern front of the Precordillera (32°41ʹ34ʺS, 68°59ʹ48″W, 1400-2900 m a.s.l.), 30 km northwest of Mendoza city, Argentina. It is a subcircular massif of 19 km2 and 5 km in diameter, intruded in the metasedimentary sequence of the Villavicencio Formation of Silurian-Devonian age. It is the result of integration of multiple pulses derived from one or more deep magma chambers, which form a suite of silicate rocks grouped into: a clinopyroxenite body, a central syenite facies with a large breccia zone at the contact with the clinopyroxenite, bodies of malignite, trachyte and syenite porphyry necks, and a system of radial and annular dikes of different compositions. Its subcircular geometry and dike system distribution are frequent features of intraplate plutons or plutons emplaced in post-orogenic settings. These morphostructural features characterize numerous alkaline complexes worldwide and denote the importance of magmatic pressures that cause doming with radial and annular fracturing, in a brittle country rock. However, in the LPC, the attitude of the internal fabric of plutonic and subvolcanic units and the preferential layout of dikes match the NW-SE extensional fractures widely distributed in the host rock. This feature indicates a strong tectonic control linked to the structure that facilitate space for emplacement, corresponding to the brittle shear zone parallel to the N-S stratigraphy of the country rock. Shearing produced a system of discontinuities, with a K fractal fracture pattern, given by the combination of Riedel (R), anti-Riedel (R‧), (P) and extensional (T) fracture systems, responsible for the control of melt migration by the opening of various fracture branches, but particularly through the NW-SE (T) fractures. Five different pulses would have ascent, (1) an initial one from which cumulate clinopyroxenite was formed, (2) a phase of mafic composition represented by

  15. Athletes and sports teams as complex adaptive system: A review of implications for learning design. [Atletas y equipos deportivos como sistemas adaptativos complejos: Una revision de las Implicaciones para el diseño del aprendizaje].

    Directory of Open Access Journals (Sweden)

    Keith Davids

    2015-01-01

    Full Text Available Ecological dynamics is a systems-oriented theoretical framework which conceptualises sport performers as complex adaptive systems. It seeks to understand the adaptive relations that emerge during coordination of interactions between each performer and a specific performance environment. This approach has identified the individual-environment relationship as the relevant scale of analysis for explaining how processes of perception, cognition and action underpin expert performance in sport. This theoretical overview elucidates key ideas from previous work identifying functional characteristics of complex adaptive systems, such as co-adaptation, emergent coordination tendencies and capacity to utilise affordances, which underlie performance and learning in team and individual sports. The review of research focuses on how key principles of ecological dynamics inform our understanding of learning and transfer, and their impact on practice task design in sport development programmes. To support this analysis, data from research on performance of elite and developmental athletes in individual and team sports are presented to highlight important principles of learning design from an ecological dynamics perspective. Resumen La dinámica ecológica es un marco teórico orientado a los sistemas que conceptualiza a los athletas como sistemas complejos adaptativos. Con el objeto de comprender las relaciones adaptativas que surgen durante la coordinación de las interacciones entre cada uno de los athletas y un medio/ambiente de actuación específico. Este enfoque ha identificado la relación individuo-ambiente como la escala de análisis relevante para explicar cómo los procesos de la percepción, la cognición y la acción respaldan el rendimiento de expertos en el deporte. Este documento de posición teórica aclara características funcionales esenciales de los sistemas adaptativos complejos, tales como co-adaptación, tendencias emergentes de

  16. High resolution crystal structure of rat long chain hydroxy acid oxidase in complex with the inhibitor 4-carboxy-5-[(4-chlorophenyl)sulfanyl]-1, 2, 3-thiadiazole. Implications for inhibitor specificity and drug design

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Zhi-wei; Vignaud, Caroline; Jaafar, Adil; Lévy, Bernard; Guéritte, Françoise; Guénard, Daniel; Lederer, Florence; Mathews, F. Scott (CNRS-UMR); (WU-MED)

    2012-05-24

    Long chain hydroxy acid oxidase (LCHAO) is responsible for the formation of methylguanidine, a toxic compound with elevated serum levels in patients with chronic renal failure. Its isozyme glycolate oxidase (GOX), has a role in the formation of oxalate, which can lead to pathological deposits of calcium oxalate, in particular in the disease primary hyperoxaluria. Inhibitors of these two enzymes may have therapeutic value. These enzymes are the only human members of the family of FMN-dependent L-2-hydroxy acid-oxidizing enzymes, with yeast flavocytochrome b{sub 2} (Fcb2) among its well studied members. We screened a chemical library for inhibitors, using in parallel rat LCHAO, human GOX and the Fcb2 flavodehydrogenase domain (FDH). Among the hits was an inhibitor, CCPST, with an IC{sub 50} in the micromolar range for all three enzymes. We report here the crystal structure of a complex between this compound and LCHAO at 1.3 {angstrom} resolution. In comparison with a lower resolution structure of this enzyme, binding of the inhibitor induces a conformational change in part of the TIM barrel loop 4, as well as protonation of the active site histidine. The CCPST interactions are compared with those it forms with human GOX and those formed by two other inhibitors with human GOX and spinach GOX. These compounds differ from CCPST in having the sulfur replaced with a nitrogen in the five-membered ring as well as different hydrophobic substituents. The possible reason for the {approx}100-fold difference in affinity between these two series of inhibitors is discussed. The present results indicate that specificity is an issue in the quest for therapeutic inhibitors of either LCHAO or GOX, but they may give leads for this quest.

  17. Exploring the strength, mode, dynamics, and kinetics of binding interaction of a cationic biological photosensitizer with DNA: implication on dissociation of the drug-DNA complex via detergent sequestration.

    Science.gov (United States)

    Paul, Bijan Kumar; Guchhait, Nikhil

    2011-10-20

    The present study aims at exploring a detailed characterization of the binding interaction of a promising cancer cell photosensitizer, harmane (HM), with DNA extracted from herring sperm. The polarity-sensitive prototropic transformation of HM, a naturally occurring, fluorescent, drug-binding alkaloid, β-carboline, is remarkably modified upon interaction with DNA and is manifested through significant modulations on the absorption and emission profiles of HM. From the series of studies undertaken in the present program, for example, absorption; steady-state emission; the effect of chaotrope (urea); iodide ion-induced steady-state fluorescence quenching; circular dichroism (CD); and helix melting from absorption spectroscopy; the mode of binding of HM into the DNA helix has been substantiated to be principally intercalative. Concomitantly, a discernible dependence of the photophysics of the DNA-bound drug on the medium ionic strength indicates that electrostatic attraction should not be ignored in the interaction. Efforts have also been delivered to delineate the dynamical aspects of the interaction, such as modulation in time-resolved fluorescence decay and rotational relaxation dynamics of the drug within the DNA environment. In view of the prospective biological applications of HM, the issue of facile dissociation of intercalated HM from the DNA helix also comprises a crucial prerequisite for the functioning as an effective therapeutic agent. In this context, our results imply that the concept of detergent-sequestered dissociation of the drug from the drug-DNA complex can be a prospective strategy through an appropriate choice of the detergent molecule. The utility of the present work resides in exploring the potential applicability of the fluorescence property of HM for studying its interactions with a relevant biological target, for example, DNA. In addition, the methods and techniques used in the present work can also be exploited to study the interaction of

  18. Palaeogene to Early Miocene sedimentary history of the Sierra Espuña (Malaguide complex, internal zone of the Betic cordilleras, SE Spain. Evidence for extra-Malaguide (Sardinian? provenance of oligocene conglomerates: Palaeogeographic implications

    Directory of Open Access Journals (Sweden)

    Geel, T.

    1996-12-01

    Full Text Available The Sierra Espuña is situated at the northern edge of the Internal Zone in the eastern Betic Cordilleras and is part of the unmetamorphosed Malaguide Complex. Palaeontological and sedimentological analysis of the Eocene to Aquitanian sediments on the northwest side of the Espuña yielded unexpected new information of importance for the reconstruction of the history of the Espuña itself and the Malaguides in general. The socalled Upper Eocene (Auversian rocks are of Early Oligocene (P20 age and contain supermature detritus derived from outside the Malaguide realm. The hundreds of meters thick limestone conglomerate formation of the Espuña is of Middle Oligocene (P21 age and represents a backstepping fan delta complex at the margin of a carbonate platform situated to the northeast of the Espuña. Analysis of the clasts suggests that this platform was a part of the north Sardinian block given the majority of fragments of Upper Jurassic sheltered inner platform (Clypeina-Trocholina limestones and dolomites. Contrary to former views (Paquet, 1966; Lonergan, 1993, the conglomerates cannot be considered to be the erosional products of Malaguide imbricated units. Therefore, one of the main arguments for early (Late Eocene to Oligocene thrusting and nappe emplacement in the Espuña area is not valido Other arguments for early kinematics are discussed, among others the allegedly continuous sedimentation from the Late Eocene until the Langhian northwest of the Espuña. Our data indicate the existence of a stratigraphic gap, comprising the middle Aquitanian to middle Burdigalian. A new model for the development of the Espuña within the Malaguide realm during the Palaeogene to Early Miocene is presented. Main thrusting and nappe emplacement is thought to have been taken place during the late Aquitanian. Finally, the recently proposed 2000 clockwise rotation of the Espuña as a coherent block during the Early to Middle Miocene (AlIerton el al., 1993 is

  19. Complex variables

    CERN Document Server

    Taylor, Joseph L

    2011-01-01

    The text covers a broad spectrum between basic and advanced complex variables on the one hand and between theoretical and applied or computational material on the other hand. With careful selection of the emphasis put on the various sections, examples, and exercises, the book can be used in a one- or two-semester course for undergraduate mathematics majors, a one-semester course for engineering or physics majors, or a one-semester course for first-year mathematics graduate students. It has been tested in all three settings at the University of Utah. The exposition is clear, concise, and lively

  20. Complex variables

    CERN Document Server

    Flanigan, Francis J

    2010-01-01

    A caution to mathematics professors: Complex Variables does not follow conventional outlines of course material. One reviewer noting its originality wrote: ""A standard text is often preferred [to a superior text like this] because the professor knows the order of topics and the problems, and doesn't really have to pay attention to the text. He can go to class without preparation."" Not so here-Dr. Flanigan treats this most important field of contemporary mathematics in a most unusual way. While all the material for an advanced undergraduate or first-year graduate course is covered, discussion

  1. Complex dynamics

    CERN Document Server

    Carleson, Lennart

    1993-01-01

    Complex dynamics is today very much a focus of interest. Though several fine expository articles were available, by P. Blanchard and by M. Yu. Lyubich in particular, until recently there was no single source where students could find the material with proofs. For anyone in our position, gathering and organizing the material required a great deal of work going through preprints and papers and in some cases even finding a proof. We hope that the results of our efforts will be of help to others who plan to learn about complex dynamics and perhaps even lecture. Meanwhile books in the field a. re beginning to appear. The Stony Brook course notes of J. Milnor were particularly welcome and useful. Still we hope that our special emphasis on the analytic side will satisfy a need. This book is a revised and expanded version of notes based on lectures of the first author at UCLA over several \\Vinter Quarters, particularly 1986 and 1990. We owe Chris Bishop a great deal of gratitude for supervising the production of cour...

  2. 新疆东天山镁铁-超镁铁岩体中橄榄石成分特征及其成因意义:以黄山东和图拉尔根为例%Compositions of olivine from the mafic-ultramafic complexs in eastern Tianshan, Xinjiang and implications to petrogenesus: Examples from Huangshandong and Tulargen complexes

    Institute of Scientific and Technical Information of China (English)

    刘艳荣; 吕新彪; 梅微; 惠卫东

    2012-01-01

    A dozen of mafic-ultramafic complexes related to copper-nickel sulphide mineralization were found in Eastern Tianshan, Xinjiang. This paper takes Huangshandong and Tulargen complexes for examples, and carries out mineral chemistry tests of fresh olivine from different lithologies. Electron microprobe analyses of olivine show that the Fo of olivine in hornblende-gabbro facies and ultramafic rock facies range from 67 to 73 and from 81 to 84, respectively; Ni contents range from 308 to 1762 ug/g in Huangshandong complex. Olivine crystals in the Tulargen complex have Fo numbers varying from 82 to 85, with Ni from 857 to 1818 μg/g. Modeling of olivine fractional crystallization and sulfide segregation show that the parental magma for Huangshandong complex has experienced 19% olivine fractional crystallization and extensive sulfide segregation (~0.3%). Re-equilibration of the early formed olivine crystals with trapped liquid can account for the variations of olivine compositions. The Tulargen complex has experienced 9% olivine fractional crystallization and extensive sulfide segregation (~0.5%).%新疆东天山发育有十多个与铜镍硫化物成矿有关的镁铁-超镁铁杂岩体,对选取于黄山东和图拉尔根岩体岩体内不同岩性中的新鲜橄榄石进行了矿物化学成分测试.黄山东岩体角闪辉长岩相的橄榄角闪辉长岩中橄榄石Fo为67~73,超镁铁岩相的角闪(斜长)橄榄岩、角闪二辉橄榄岩和斜长单辉橄榄岩中橄榄石Fo为81~84,Ni含量为308~1762 μg/g;图拉尔根岩体中橄榄石Fo为82~85,Ni含量变化范围为857~1818μg/g.利用最高Fo含量的橄榄石成分计算得到黄山东岩体母岩浆MgO为10.3%,图拉尔根岩体母岩浆MgO为11.47%.橄榄石分离结晶和硫化物熔离模拟结果显示,黄山东岩体发生了19%的橄榄石分离结晶,由橄榄石分离结晶导致硫化物熔离的程度约为0.3%,晶间硫化物熔浆的物质交换作用对黄山东橄榄石

  3. Quantum coherence in photosynthetic complexes

    Energy Technology Data Exchange (ETDEWEB)

    Calhoun, Tessa R.; Fleming, Graham R. [Department of Chemistry, University of California, Berkeley, CA 94720 (United States); Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States)

    2011-04-15

    The initial steps of photosynthesis require the absorption and subsequent transfer of energy through an intricate network of pigment-protein complexes. Held within the protein scaffold of these complexes, chromophore molecules are densely packed and fixed in specific geometries relative to one another resulting in Coulombic coupling. Excitation energy transfer through these systems can be accomplished with near unity quantum efficiency [Wraight and Clayton, Biochim. Biophys. Acta 333, 246 (1974)]. While replication of this feat is desirable for artificial photosynthesis, the mechanism by which nature achieves this efficiency is unknown. Recent experiments have revealed the presence of long-lived quantum coherences in photosynthetic pigment-protein complexes spanning bacterial and plant species with a variety of functions and compositions. Its ubiquitous presence and wavelike energy transfer implicate quantum coherence as key to the high efficiency achieved by photosynthesis. (Copyright copyright 2011 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  4. Symptoms of complexity in a tourism system

    CERN Document Server

    Baggio, R

    2007-01-01

    Tourism destinations behave as dynamic evolving complex systems, encompassing numerous factors and activities which are interdependent and whose relationships might be highly nonlinear. Traditional research in this field has looked after a linear approach: variables and relationships are monitored in order to forecast future outcomes with simplified models and to derive implications for management organizations. The limitations of this approach have become apparent in many cases, and several authors claim for a new and different attitude. While complex systems ideas are amongst the most promising interdisciplinary research themes emerged in the last few decades, very little has been done so far in the field of tourism. This paper presents a brief overview of the complexity framework as a means to understand structures, characteristics, relationships and explores the implications and contributions of the complexity literature on tourism systems. The objective is to allow the reader to gain a deeper appreciatio...

  5. The Orpheus complex.

    Science.gov (United States)

    Dawson, T

    2000-04-01

    This paper examines the possible psychological implications of two adaptations of the myth of Orpheus and Eurydice, both of which were completed in 1997. The first is by a man: 'Deconstructing Harry', a film by Woody Allen. The second is by a woman: 'Eurydice in the Underworld', a short story written by Kathy Acker in the last year of her life. The paper argues that there are only four 'necessary events' in the myth of Orpheus and Eurydice. It defines the sequence of these events as a 'mythic pattern' that represents the experience of loss, unconscious yearning, depression, and psychological inflation. The film is examined as an expression of an 'Orpheus complex', the short story as an expression of an 'Eurydice complex'. The paper suggests a possible reason for the persistence of interest in the myth throughout the twentieth century. Although it notes that women appear to find it easier to free themselves from identification with the mythic pattern, it also provides reasons for thinking that men may be about to do the same.

  6. Cosmic Complexity

    Science.gov (United States)

    Mather, John C.

    2012-01-01

    What explains the extraordinary complexity of the observed universe, on all scales from quarks to the accelerating universe? My favorite explanation (which I certainty did not invent) ls that the fundamental laws of physics produce natural instability, energy flows, and chaos. Some call the result the Life Force, some note that the Earth is a living system itself (Gaia, a "tough bitch" according to Margulis), and some conclude that the observed complexity requires a supernatural explanation (of which we have many). But my dad was a statistician (of dairy cows) and he told me about cells and genes and evolution and chance when I was very small. So a scientist must look for me explanation of how nature's laws and statistics brought us into conscious existence. And how is that seemll"!gly Improbable events are actually happening a!1 the time? Well, the physicists have countless examples of natural instability, in which energy is released to power change from simplicity to complexity. One of the most common to see is that cooling water vapor below the freezing point produces snowflakes, no two alike, and all complex and beautiful. We see it often so we are not amazed. But physlc!sts have observed so many kinds of these changes from one structure to another (we call them phase transitions) that the Nobel Prize in 1992 could be awarded for understanding the mathematics of their common features. Now for a few examples of how the laws of nature produce the instabilities that lead to our own existence. First, the Big Bang (what an insufficient name!) apparently came from an instability, in which the "false vacuum" eventually decayed into the ordinary vacuum we have today, plus the most fundamental particles we know, the quarks and leptons. So the universe as a whole started with an instability. Then, a great expansion and cooling happened, and the loose quarks, finding themselves unstable too, bound themselves together into today's less elementary particles like protons and

  7. Cosmic Complexity

    Science.gov (United States)

    Mather, John C.

    2012-01-01

    What explains the extraordinary complexity of the observed universe, on all scales from quarks to the accelerating universe? My favorite explanation (which I certainty did not invent) ls that the fundamental laws of physics produce natural instability, energy flows, and chaos. Some call the result the Life Force, some note that the Earth is a living system itself (Gaia, a "tough bitch" according to Margulis), and some conclude that the observed complexity requires a supernatural explanation (of which we have many). But my dad was a statistician (of dairy cows) and he told me about cells and genes and evolution and chance when I was very small. So a scientist must look for me explanation of how nature's laws and statistics brought us into conscious existence. And how is that seemll"!gly Improbable events are actually happening a!1 the time? Well, the physicists have countless examples of natural instability, in which energy is released to power change from simplicity to complexity. One of the most common to see is that cooling water vapor below the freezing point produces snowflakes, no two alike, and all complex and beautiful. We see it often so we are not amazed. But physlc!sts have observed so many kinds of these changes from one structure to another (we call them phase transitions) that the Nobel Prize in 1992 could be awarded for understanding the mathematics of their common features. Now for a few examples of how the laws of nature produce the instabilities that lead to our own existence. First, the Big Bang (what an insufficient name!) apparently came from an instability, in which the "false vacuum" eventually decayed into the ordinary vacuum we have today, plus the most fundamental particles we know, the quarks and leptons. So the universe as a whole started with an instability. Then, a great expansion and cooling happened, and the loose quarks, finding themselves unstable too, bound themselves together into today's less elementary particles like protons and

  8. Complexity and Educational Research: A Critical Reflection

    Science.gov (United States)

    Kuhn, Lesley

    2008-01-01

    Judgements concerning proper or appropriate educational endeavour, methods of investigation and philosophising about education necessarily implicate perspectives, values, assumptions and beliefs. In recent years ideas from the complexity sciences have been utilised in many domains including psychology, economics, architecture, social science and…

  9. Complexity and the Culture of Curriculum

    Science.gov (United States)

    Doll, William E.

    2008-01-01

    This paper has two main foci: (1) the history of curriculum design, and (2) implications from the new sciences of chaos and complexity for the development of new forms of curriculum design and teaching implementation. Regarding the first focus, the paper posits that there exist--to use Wittgenstein's phrase--"family resemblances" between Peter…

  10. On the Complexity of Multiple Feminist Identities

    Science.gov (United States)

    Enns, Carolyn Zerbe; Fischer, Ann R.

    2012-01-01

    This response to J. D. Yoder, A. F. Snell, and A. Tobias (2012) discusses implications for applying and building on their research findings regarding the complex feminist identifications found in young university women. Based on identity scholarship by women of color, it also discusses the challenges of conceptualizing and studying interactions…

  11. Culture & Cognition in a Complex Megaorganization: Implications for Military Leadership

    Science.gov (United States)

    2010-01-01

    actively construct meaning about their environments based on cognitive interpretations. As noted by Clifford Geetz (1973: 5), "man is an animal...govfspeechesfspeech.a spx?speechid~ 1233. Geertz , C. (1973). The interpretation of cultures: Selected essays, New York: Basic Books. Gerras, S.J

  12. Crowds As Complex Adaptive Systems: Strategic Implications For Law Enforcement

    Science.gov (United States)

    2016-03-01

    through critical analysis . A number of recommendations regarding policy, training, and equipment are presented in this thesis. Regarding policy, police...sound methodological research and analysis presented in this thesis. At the strategic level, crowd control operations in emergent conditions must...Covington, and Marcia Zangrilli, “Sentiment & Discourse Analysis:Theory, Extraction and Application,” in Socio-Cultural Analysis with the RSI Paradigm, ed

  13. The complexity and implications of yeast prion domains

    OpenAIRE

    Du, Zhiqiang

    2011-01-01

    Prions are infectious proteins with altered conformations converted from otherwise normal host proteins. While there is only one known mammalian prion protein, PrP, a handful of prion proteins have been identified in the yeast Saccharomyces cerevisiae. Yeast prion proteins usually have a defined region called prion domain (PrD) essential for prion properties, which are typically rich in glutamine (Q) and asparagine (N). Despite sharing several common features, individual yeast PrDs are genera...

  14. Complexity, Reliability, and Design: Manufacturing Implications (Revised Version)

    OpenAIRE

    Ayres, R.U.

    1987-01-01

    A major component of IIASA's Technology-Economy-Society (TES) Program is a project to assess "Computer Integrated Manufacturing" (CIM), by which is meant the whole range of application of computers to discrete parts manufacturing and assembly. The various familiar acronyms and buzzwords, such as NC, CNC, DNC, CAD/CAM robotics, FMS, "group technology" and MRP all fit under the broad CIM umbrella. The present paper is the first to be generated, at least in part, under the project. (In fact, an ...

  15. Copper complexes as therapeutic agents.

    Science.gov (United States)

    Duncan, Clare; White, Anthony R

    2012-02-01

    The importance of transition metals in biological processes has been well established. Copper (Cu) is a transition metal that can exist in oxidised and reduced states. This allows it to participate in redox and catalytic chemistry, making it a suitable cofactor for a diverse range of enzymes and molecules. Cu deficiency or toxicity is implicated in a variety of pathological conditions; therefore inorganic complexes of Cu have been investigated for their therapeutic and diagnostic potential. These Cu complexes have been shown to be effective in cancer treatment due to their cytotoxic action on tumour cells. Alternatively, Cu complexes can also modulate Cu homeostasis in the brain, resulting in protective effects in several models of neurodegeneration. In other diseases such as coronary heart disease and skin disease, the success of Cu complexes as potential therapeutics will most likely be due to their ability to increase SOD activity, leading to relief of oxidative stress. This review seeks to provide a broad insight into some of the diverse actions of Cu complexes and demonstrate the strong future for these compounds as potential therapeutic agents.

  16. MARKETING IMPLICATION IN WINE ECONOMY

    Directory of Open Access Journals (Sweden)

    Ştefan MATEI

    2014-11-01

    Full Text Available The wine, a very complex product in viticulture, has proved its tremendous importance not only to the individual but rational nutrition and increasing national income of a country cultivators (evidenced by the upward trend of the share of crop production horticulture and viticulture in the global economy agricultural. More interesting is, given the continued growth in the number of scientific publications and their quality (at least since the 1980s - where "wine" is the centerpiece of these studies - we can not but be witnessing a growing interest more to this "potion" and found that the growing popularity of wine in the science reveals the emergence of a new academic field, ie "wine economy" (or wine-economy. This study aims to make a foray into "wine economy" and to outline some of the implications of marketing in this area.

  17. Intuitionistic implication without disjunction

    NARCIS (Netherlands)

    Renardel de Lavalette, Gerard R.; Hendriks, Alex; Jongh, Dick H.J. de

    2012-01-01

    We investigate fragments of intuitionistic propositional logic containing implication but not disjunction. These fragments are finite, but their size grows superexponentially with the number of generators. Exact models are used to characterize the fragments.

  18. Active colloids in complex fluids

    CERN Document Server

    Patteson, Alison E; Arratia, Paulo E

    2016-01-01

    We review recent work on active colloids or swimmers, such as self-propelled microorganisms, phoretic colloidal particles, and artificial micro-robotic systems, moving in fluid-like environments. These environments can be water-like and Newtonian but can frequently contain macromolecules, flexible polymers, soft cells, or hard particles, which impart complex, nonlinear rheological features to the fluid. While significant progress has been made on understanding how active colloids move and interact in Newtonian fluids, little is known on how active colloids behave in complex and non-Newtonian fluids. An emerging literature is starting to show how fluid rheology can dramatically change the gaits and speeds of individual swimmers. Simultaneously, a moving swimmer induces time dependent, three dimensional fluid flows, that can modify the medium (fluid) rheological properties. This two-way, non-linear coupling at microscopic scales has profound implications at meso- and macro-scales: steady state suspension proper...

  19. Griffiths phases on complex networks.

    Science.gov (United States)

    Muñoz, Miguel A; Juhász, Róbert; Castellano, Claudio; Odor, Géza

    2010-09-17

    Quenched disorder is known to play a relevant role in dynamical processes and phase transitions. Its effects on the dynamics of complex networks have hardly been studied. Aimed at filling this gap, we analyze the contact process, i.e., the simplest propagation model, with quenched disorder on complex networks. We find Griffiths phases and other rare-region effects, leading rather generically to anomalously slow (algebraic, logarithmic, …) relaxation, on Erdos-Rényi networks. Similar effects are predicted to exist for other topologies with a finite percolation threshold. More surprisingly, we find that Griffiths phases can also emerge in the absence of quenched disorder, as a consequence of topological heterogeneity in networks with finite topological dimension. These results have a broad spectrum of implications for propagation phenomena and other dynamical processes on networks.

  20. Complexity Thinking and Methodology: The Potential of "Complex Case Study" for Educational Research

    Science.gov (United States)

    Hetherington, Lindsay

    2013-01-01

    Complexity theories have in common perspectives that challenge linear methodologies and views of causality. In educational research, relatively little has been written explicitly exploring their implications for educational research methodology in general and case study in particular. In this paper, I offer a rationale for case study as a research…

  1. 'If things were simple...': complexity in education.

    Science.gov (United States)

    Davis, Brent; Sumara, Dennis

    2010-08-01

    In this speculative essay, we explore some of the implications and possibilities of complexity thinking for formal education. We begin by developing the working definition that complexity research is the study of learning systems. Drawing on hard (rigorously empirical) complexity research, we critique some of the untenable assumptions and constructs that are typically used to frame those social enterprises that are attentive to adaptive, learning forms--including education, social work and health care. Looking to soft (holistic and more action-oriented) complexity research, we review some of the insights and advice that have arisen among educational researchers. This part of the discussion is framed by a brief description of an ongoing study of teachers' disciplinary knowledge of mathematics--specifically how complexity theory compels and enables us to grapple with the unique qualities of our 'object' of study, its emergence, its relationship to student understanding, and how it is implicated in such grander systems as culture and global ecology. We conclude by arguing that complexity theory might be properly construed as a theory of education, in contrast to the many theories that have been imported into and imposed on discussions of education over the past few centuries.

  2. Neurocognitive mechanisms for processing inflectional and derivational complexity in English

    Directory of Open Access Journals (Sweden)

    Božić Mirjana

    2013-01-01

    Full Text Available In the current paper we discuss the mechanisms that underlie the processing of inflectional and derivational complexity in English. We address this issue from a neurocognitive perspective and present evidence from a new fMRI study that the two types of morphological complexity engage the language processing network in different ways. The processing of inflectional complexity selectively activates a left-lateralised frontotemporal system, specialised for combinatorial grammatical computations, while derivational complexity primarily engages a distributed bilateral system, argued to support whole-word, stem based lexical access. We discuss the implications of our findings for theories of the processing and representation of morphologically complex words.

  3. PROYECTO GENOMA HUMANO VISTO DESDE EL PENSAMIENTO DE LA COMPLEJIDAD: IMPLICACIONES BIOÉTICAS PROJETO GENOMA HUMANO VISTO SOB A ÓTICA DO PENSAMENTO DA COMPLEXIDADE: IMPLICAÇÕES BIOÉTICAS THE HUMAN GENOME PROJECT SEEN FROM COMPLEXITY THEORY: BIOETHICAL IMPLICATIONS

    Directory of Open Access Journals (Sweden)

    Sonia R Sánchez González

    2008-01-01

    Full Text Available En este trabajo se entrega una visión desde el pensamiento de la complejidad acerca de las implicaciones sistémicas de la manipulación del genoma humano. La evolución es el proceso central de la biología que nos ayuda a comprender la diversidad del mundo vivo. Hoy se quiere imponer el determinismo genético, sin tener en cuenta que los seres humanos son, además de su dotación genética, producto de la interacción con su medio, tanto biológico como social. Si bien puede resultar de gran beneficio para la humanidad, la manipulación del genoma humano puede ser utilizada con fines discriminatorios y de dominación, además de lo imprevisible de las consecuencias debido a las propiedades emergentes que resultarían de cada procedimiento.Neste trabalho se oferece uma visão a partir do pensamento da complexidade acerca das implicações sistêmicas da manipulação do genoma humano. A evolução é o processo central da biologia que nos ajuda a compreender a diversidade do mundo vivo. Hoje se quer impor o determinismo genético, sem levar em conta que os seres humanos são, além de sua dotação genética, produto da interação com o seu meio, tanto biológico como social. Ainda que possa resultar num grande beneficio para a humanidade, a manipulação do genoma humano poderá ser utilizada com finalidades discriminatórias e de dominação, ademais da imprevisibilidade das conseqüências devido às propriedades emergentes que resultariam de cada procedimento.In this work, a vision is proposed from a complexity viewpoint about the systematic implications of human genome manipulation. Evolution is the central biological process that helps us understand the diversity of the living world. Today, it is held as the prevalent viewpoint without taking into account that human beings are, in addition to their genetic endowment, products of interaction with their surroundings, as much biological as social. Although it can be of great benefit to

  4. Carney complex (CNC).

    Science.gov (United States)

    Bertherat, Jérôme

    2006-06-06

    The Carney complex (CNC) is a dominantly inherited syndrome characterized by spotty skin pigmentation, endocrine overactivity and myxomas. Skin pigmentation anomalies include lentigines and blue naevi. The most common endocrine gland manifestations are acromegaly, thyroid and testicular tumors, and adrenocorticotropic hormone (ACTH)-independent Cushing's syndrome due to primary pigmented nodular adrenocortical disease (PPNAD). PPNAD, a rare cause of Cushing's syndrome, is due to primary bilateral adrenal defect that can be also observed in some patients without other CNC manifestations or familial history of the disease. Myxomas can be observed in the heart, skin and breast. Cardiac myxomas can develop in any cardiac chamber and may be multiple. One of the putative CNC genes located on 17q22-24, (PRKAR1A), has been identified to encode the regulatory subunit (R1A) of protein kinase A. Heterozygous inactivating mutations of PRKAR1A were reported initially in 45 to 65% of CNC index cases, and may be present in about 80% of the CNC families presenting mainly with Cushing's syndrome. PRKAR1A is a key component of the cAMP signaling pathway that has been implicated in endocrine tumorigenesis and could, at least partly, function as a tumor suppressor gene. Genetic analysis should be proposed to all CNC index cases. Patients with CNC or with a genetic predisposition to CNC should have regular screening for manifestations of the disease. Clinical work-up for all the manifestations of CNC should be performed at least once a year in all patients and should start in infancy. Cardiac myxomas require surgical removal. Treatment of the other manifestations of CNC should be discussed and may include follow-up, surgery, or medical treatment depending on the location of the tumor, its size, the existence of clinical signs of tumor mass or hormonal excess, and the suspicion of malignancy. Bilateral adrenalectomy is the most common treatment for Cushing's syndrome due to PPNAD.

  5. Carney complex (CNC

    Directory of Open Access Journals (Sweden)

    Bertherat Jérôme

    2006-06-01

    Full Text Available Abstract The Carney complex (CNC is a dominantly inherited syndrome characterized by spotty skin pigmentation, endocrine overactivity and myxomas. Skin pigmentation anomalies include lentigines and blue naevi. The most common endocrine gland manifestations are acromegaly, thyroid and testicular tumors, and adrenocorticotropic hormone (ACTH-independent Cushing's syndrome due to primary pigmented nodular adrenocortical disease (PPNAD. PPNAD, a rare cause of Cushing's syndrome, is due to primary bilateral adrenal defect that can be also observed in some patients without other CNC manifestations or familial history of the disease. Myxomas can be observed in the heart, skin and breast. Cardiac myxomas can develop in any cardiac chamber and may be multiple. One of the putative CNC genes located on 17q22-24, (PRKAR1A, has been identified to encode the regulatory subunit (R1A of protein kinase A. Heterozygous inactivating mutations of PRKAR1A were reported initially in 45 to 65 % of CNC index cases, and may be present in about 80 % of the CNC families presenting mainly with Cushing's syndrome. PRKAR1A is a key component of the cAMP signaling pathway that has been implicated in endocrine tumorigenesis and could, at least partly, function as a tumor suppressor gene. Genetic analysis should be proposed to all CNC index cases. Patients with CNC or with a genetic predisposition to CNC should have regular screening for manifestations of the disease. Clinical work-up for all the manifestations of CNC should be performed at least once a year in all patients and should start in infancy. Cardiac myxomas require surgical removal. Treatment of the other manifestations of CNC should be discussed and may include follow-up, surgery, or medical treatment depending on the location of the tumor, its size, the existence of clinical signs of tumor mass or hormonal excess, and the suspicion of malignancy. Bilateral adrenalectomy is the most common treatment for Cushing

  6. Psoriasis : implications of biologics

    NARCIS (Netherlands)

    Lecluse, L.L.A.

    2010-01-01

    Since the end of 2004 several specific immunomodulating therapies: ‘biologic response modifiers’ or ‘biologics’ have been registered for moderate to severe psoriasis in Europe. This thesis is considering the implications of the introduction of the biologics for psoriasis patients, focusing on safety

  7. Complex anatomic variation in the brachial region.

    Science.gov (United States)

    Troupis, Th; Michalinos, A; Protogerou, V; Mazarakis, A; Skandalakis, P

    2015-01-01

    Authors describe a case of a complex anatomic variation discovered during dissection of the humeral region. On the right side, brachial artery followed a superficial course. Musculocutaneous nerve did not pierce coracobrachialis muscle but instead passed below the muscle before continuing in the forearm. On the left side, a communication between musculocutaneous and median nerve was dissected. Those variations are analytically presented with a brief review on their anatomic and clinical implications. Considerations on their embryological origin are attempted.

  8. Quantum Measurement, Complexity and Discrete Physics

    OpenAIRE

    Leckey, Martin

    2003-01-01

    This paper presents a new modified quantum mechanics, Critical Complexity Quantum Mechanics, which includes a new account of wavefunction collapse. This modified quantum mechanics is shown to arise naturally from a fully discrete physics, where all physical quantities are discrete rather than continuous. I compare this theory with the spontaneous collapse theories of Ghirardi, Rimini, Weber and Pearle and discuss some implications of the theory for a realist view of the quantum realm.

  9. Algorithms, complexity, and the sciences.

    Science.gov (United States)

    Papadimitriou, Christos

    2014-11-11

    Algorithms, perhaps together with Moore's law, compose the engine of the information technology revolution, whereas complexity--the antithesis of algorithms--is one of the deepest realms of mathematical investigation. After introducing the basic concepts of algorithms and complexity, and the fundamental complexity classes P (polynomial time) and NP (nondeterministic polynomial time, or search problems), we discuss briefly the P vs. NP problem. We then focus on certain classes between P and NP which capture important phenomena in the social and life sciences, namely the Nash equlibrium and other equilibria in economics and game theory, and certain processes in population genetics and evolution. Finally, an algorithm known as multiplicative weights update (MWU) provides an algorithmic interpretation of the evolution of allele frequencies in a population under sex and weak selection. All three of these equivalences are rife with domain-specific implications: The concept of Nash equilibrium may be less universal--and therefore less compelling--than has been presumed; selection on gene interactions may entail the maintenance of genetic variation for longer periods than selection on single alleles predicts; whereas MWU can be shown to maximize, for each gene, a convex combination of the gene's cumulative fitness in the population and the entropy of the allele distribution, an insight that may be pertinent to the maintenance of variation in evolution.

  10. The Bologna Process: Perspectives and Implications for the Russian University

    Science.gov (United States)

    Telegina, Galina; Schwengel, Hermann

    2012-01-01

    This article draws on the discourses of educational policy in Europe to focus on the implications of the Bologna Process for higher education in Russia. The Bologna Process, as a multi-dimensional discourse involving a variety of social actors, reflects some of the complexities and contradictions of globalisation, in many local cases evoking…

  11. Resilience of modular complex networks

    CERN Document Server

    Shai, Saray; Kenett, Yoed N; Faust, Miriam; Dobson, Simon; Havlin, Shlomo

    2014-01-01

    Complex networks often have a modular structure, where a number of tightly- connected groups of nodes (modules) have relatively few interconnections. Modularity had been shown to have an important effect on the evolution and stability of biological networks, on the scalability and efficiency of large-scale infrastructure, and the development of economic and social systems. An analytical framework for understanding modularity and its effects on network vulnerability is still missing. Through recent advances in the understanding of multilayer networks, however, it is now possible to develop a theoretical framework to systematically study this critical issue. Here we study, analytically and numerically, the resilience of modular networks under attacks on interconnected nodes, which exhibit high betweenness values and are often more exposed to failure. Our model provides new understandings into the feedback between structure and function in real world systems, and consequently has important implications as divers...

  12. Ionization potentials some variations, implications and applications

    CERN Document Server

    Ahrens, L H

    1983-01-01

    Ionization Potentials: Some Variations, Implications and Applications covers several aspects of ionization potential that is a highly significant parameter in controlling the properties of electric discharge. Comprised of 17 chapters, the book covers topic relevant to ionization potentials, such as properties, concepts, and applications, in order to understand and fully comprehend all aspects of ionization potential. The opening chapter is a review of ionization potentials and a discussion of trends and features. The succeeding chapters then tackle complex topics such as the s and p electrons;

  13. Epigenetics: ambiguities and implications.

    Science.gov (United States)

    Stotz, Karola; Griffiths, Paul

    2016-12-01

    Everyone has heard of 'epigenetics', but the term means different things to different researchers. Four important contemporary meanings are outlined in this paper. Epigenetics in its various senses has implications for development, heredity, and evolution, and also for medicine. Concerning development, it cements the vision of a reactive genome strongly coupled to its environment. Concerning heredity, both narrowly epigenetic and broader 'exogenetic' systems of inheritance play important roles in the construction of phenotypes. A thoroughly epigenetic model of development and evolution was Waddington's aim when he introduced the term 'epigenetics' in the 1940s, but it has taken the modern development of molecular epigenetics to realize this aim. In the final sections of the paper we briefly outline some further implications of epigenetics for medicine and for the nature/nurture debate.

  14. Primal implication as encryption

    OpenAIRE

    Krupski, Vladimir

    2013-01-01

    We propose a "cryptographic" interpretation for the propositional connectives of primal infon logic introduced by Y. Gurevich and I. Neeman and prove the corresponding soundness and completeness results. Primal implication $\\imp{\\varphi}{\\psi}$ corresponds to the encryption of $\\psi$ with a secret key $\\varphi$, primal disjunction $\\vp{\\varphi}{\\psi}$ is a group key and $\\bot$ reflects some backdoor constructions such as full superuser permissions or a universal decryption key. For the logic ...

  15. Complex networks: Dynamics and security

    Indian Academy of Sciences (India)

    Ying-Cheng Lai; Adilson Motter; Takashi Nishikawa; Kwangho Park; Liang Zhao

    2005-04-01

    This paper presents a perspective in the study of complex networks by focusing on how dynamics may affect network security under attacks. In particular, we review two related problems: attack-induced cascading breakdown and range-based attacks on links. A cascade in a network means the failure of a substantial fraction of the entire network in a cascading manner, which can be induced by the failure of or attacks on only a few nodes. These have been reported for the internet and for the power grid (e.g., the August 10, 1996 failure of the western United States power grid). We study a mechanism for cascades in complex networks by constructing a model incorporating the flows of information and physical quantities in the network. Using this model we can also show that the cascading phenomenon can be understood as a phase transition in terms of the key parameter characterizing the node capacity. For a parameter value below the phase-transition point, cascading failures can cause the network to disintegrate almost entirely. We will show how to obtain a theoretical estimate for the phase-transition point. The second problem is motivated by the fact that most existing works on the security of complex networks consider attacks on nodes rather than on links. We address attacks on links. Our investigation leads to the finding that many scale-free networks are more sensitive to attacks on short-range than on long-range links. Considering that the small-world phenomenon in complex networks has been identified as being due to the presence of long-range links, i.e., links connecting nodes that would otherwise be separated by a long node-to-node distance, our result, besides its importance concerning network efficiency and security, has the striking implication that the small-world property of scale-free networks is mainly due to short-range links.

  16. Hyper Space Complex Number

    OpenAIRE

    Tan, Shanguang

    2007-01-01

    A new kind of numbers called Hyper Space Complex Numbers and its algebras are defined and proved. It is with good properties as the classic Complex Numbers, such as expressed in coordinates, triangular and exponent forms and following the associative and commutative laws of addition and multiplication. So the classic Complex Number is developed from in complex plane with two dimensions to in complex space with N dimensions and the number system is enlarged also.

  17. Complex networks analysis of language complexity

    CERN Document Server

    Amancio, Diego R; Oliveira, Osvaldo N; Costa, Luciano da F; 10.1209/0295-5075/100/58002

    2013-01-01

    Methods from statistical physics, such as those involving complex networks, have been increasingly used in quantitative analysis of linguistic phenomena. In this paper, we represented pieces of text with different levels of simplification in co-occurrence networks and found that topological regularity correlated negatively with textual complexity. Furthermore, in less complex texts the distance between concepts, represented as nodes, tended to decrease. The complex networks metrics were treated with multivariate pattern recognition techniques, which allowed us to distinguish between original texts and their simplified versions. For each original text, two simplified versions were generated manually with increasing number of simplification operations. As expected, distinction was easier for the strongly simplified versions, where the most relevant metrics were node strength, shortest paths and diversity. Also, the discrimination of complex texts was improved with higher hierarchical network metrics, thus point...

  18. [Complexity: concept and challenges for public health interventions].

    Science.gov (United States)

    Pagani, Victoria; Kivits, Joëlle; Minary, Laetitia; Cambon, Linda; Claudot, Frédérique; Alla, François

    2017-03-06

    Introduction: Since 2000, the notion of “complex interventions” has been emerging in the health research field. “Complex interventions” and “complexity” are commonly used terms, but they are generally not defined. Conceptual ambiguities persist concerning the notion of complexity. The objective of this exploratory review is to characterize the notion of complexity: What is complexity? Where does this notion come from and what does it cover? What are the consequences of complexity in the health field?Methods: To clarify the concept of complexity, a narrative review was conducted in the fields of humanities and social science, managerial economics, psychology and healthcare.Results: The concept of complexity, that can be attributed to Edgar Morin, has been the subject of appropriations, adaptations, and operations in multiple areas. Complexity consists of understanding the factors influencing individual decisions. In the field of healthcare, the concept of complexity is used more pragmatically and is defined by objective characteristics of interventions (defined as complex) or their contexts for the practical purposes of evaluation.Discussion: The notions of complexity and complex interventions have implications for researchers and users of the results of research. In particular, the notion of complexity is designed to provide a better understanding of the mechanism of effectiveness of interventions, support transferability and use by actors and decision-makers.

  19. Complex differential geometry

    CERN Document Server

    Zheng, Fangyang

    2002-01-01

    The theory of complex manifolds overlaps with several branches of mathematics, including differential geometry, algebraic geometry, several complex variables, global analysis, topology, algebraic number theory, and mathematical physics. Complex manifolds provide a rich class of geometric objects, for example the (common) zero locus of any generic set of complex polynomials is always a complex manifold. Yet complex manifolds behave differently than generic smooth manifolds; they are more coherent and fragile. The rich yet restrictive character of complex manifolds makes them a special and interesting object of study. This book is a self-contained graduate textbook that discusses the differential geometric aspects of complex manifolds. The first part contains standard materials from general topology, differentiable manifolds, and basic Riemannian geometry. The second part discusses complex manifolds and analytic varieties, sheaves and holomorphic vector bundles, and gives a brief account of the surface classifi...

  20. Radioisotope trithiol complexes

    Energy Technology Data Exchange (ETDEWEB)

    Jurisson, Silvia S.; Cutler, Cathy S.; Degraffenreid, Anthony J.

    2016-08-30

    The present invention is directed to a series of stable radioisotope trithiol complexes that provide a simplified route for the direct complexation of radioisotopes present in low concentrations. In certain embodiments, the complex contains a linking domain configured to conjugate the radioisotope trithiol complex to a targeting vector. The invention is also directed to a novel method of linking the radioisotope to a trithiol compound to form the radioisotope trithiol complex. The inventive radioisotope trithiol complexes may be utilized for a variety of applications, including diagnostics and/or treatment in nuclear medicine.

  1. Emergence of bimodality in controlling complex networks

    CERN Document Server

    Jia, Tao; Csóka, Endre; Pósfai, Márton; Slotine, Jean-Jacques; Barabási, Albert-László

    2015-01-01

    Our ability to control complex systems is a fundamental challenge of contemporary science. Recently introduced tools to identify the driver nodes, nodes through which we can achieve full control, predict the existence of multiple control configurations, prompting us to classify each node in a network based on their role in control. Accordingly a node is critical, intermittent or redundant if it acts as a driver node in all, some or none of the control configurations. Here we develop an analytical framework to identify the category of each node, leading to the discovery of two distinct control modes in complex systems: centralized vs distributed control. We predict the control mode for an arbitrary network and show that one can alter it through small structural perturbations. The uncovered bimodality has implications from network security to organizational research and offers new insights into the dynamics and control of complex systems.

  2. The exocyst complex in health and disease

    Directory of Open Access Journals (Sweden)

    Magdanela eMartin-Urdiroz

    2016-04-01

    Full Text Available Exocytosis involves the fusion of intracellular secretory vesicles with the PM, thereby delivering integral membrane proteins to the cell surface and releasing material into the extracellular space. Importantly, exocytosis also provides a source of lipid moieties for membrane extension. The tethering of the secretory vesicle before docking and fusion with the PM is mediated by the exocyst complex, an evolutionary conserved octameric complex of proteins. Recent findings indicate that the exocyst complex also takes part in other intra-cellular processes besides secretion. These various functions seem to converge towards defining a direction of membrane growth in a range of systems from fungi to plants and from neurons to cilia. In this review we summarise the current knowledge of exocyst function in cell polarity, signalling and cell-cell communication and discuss implications for plant and animal health and disease.

  3. Doxorubicin Lipid Complex Injection

    Science.gov (United States)

    Doxorubicin lipid complex is used to treat ovarian cancer that has not improved or that has worsened after treatment with other medications. Doxorubicin lipid complex is also used to treat Kaposi's ...

  4. Irinotecan Lipid Complex Injection

    Science.gov (United States)

    Irinotecan lipid complex is used in combination with other medications to treat pancreatic cancer that has spread to other ... worsened after treatment with other chemotherapy medications. Irinotecan lipid complex is in a class of antineoplastic medications ...

  5. Daunorubicin Lipid Complex Injection

    Science.gov (United States)

    Daunorubicin lipid complex is used to treat advanced Kaposi's sarcoma (a type of cancer that causes abnormal tissue to ... body) related to acquired immunodeficiency syndrome (AIDS). Daunorubicin lipid complex is in a class of medications called ...

  6. Vincristine Lipid Complex Injection

    Science.gov (United States)

    Vincristine lipid complex is used to treat a certain type of acute lymphoblastic leukemia (ALL; a type of cancer ... least two different treatments with other medications. Vincristine lipid complex is in a class of medications called ...

  7. Oligocyclopentadienyl transition metal complexes

    Energy Technology Data Exchange (ETDEWEB)

    de Azevedo, Cristina G.; Vollhardt, K. Peter C.

    2002-01-18

    Synthesis, characterization, and reactivity studies of oligocyclopentadienyl transition metal complexes, namely those of fulvalene, tercyclopentadienyl, quatercyclopentadienyl, and pentacyclopentadienyl(cyclopentadienyl) are the subject of this account. Thermal-, photo-, and redox chemistries of homo- and heteropolynuclear complexes are described.

  8. QCD Critical Point and Complex Chemical Potential Singularities

    CERN Document Server

    Stephanov, M A

    2006-01-01

    The thermodynamic singularities of QCD in the plane of complex baryo-chemical potential mu are studied. Predictions are made using scaling and universality arguments in the vicinity of the massless quark limit. The results are illustrated by a calculation of complex mu singularities in a random matrix model at finite temperature. Implications for lattice QCD simulations aimed at locating the QCD critical point are discussed.

  9. Suppressors of superoxide production from mitochondrial complex III.

    Science.gov (United States)

    Orr, Adam L; Vargas, Leonardo; Turk, Carolina N; Baaten, Janine E; Matzen, Jason T; Dardov, Victoria J; Attle, Stephen J; Li, Jing; Quackenbush, Douglas C; Goncalves, Renata L S; Perevoshchikova, Irina V; Petrassi, H Michael; Meeusen, Shelly L; Ainscow, Edward K; Brand, Martin D

    2015-11-01

    Mitochondrial electron transport drives ATP synthesis but also generates reactive oxygen species, which are both cellular signals and damaging oxidants. Superoxide production by respiratory complex III is implicated in diverse signaling events and pathologies, but its role remains controversial. Using high-throughput screening, we identified compounds that selectively eliminate superoxide production by complex III without altering oxidative phosphorylation; they modulate retrograde signaling including cellular responses to hypoxic and oxidative stress.

  10. Evolution of biological complexity

    OpenAIRE

    Adami, Christoph; Ofria, Charles; Travis C. Collier

    2000-01-01

    In order to make a case for or against a trend in the evolution of complexity in biological evolution, complexity needs to be both rigorously defined and measurable. A recent information-theoretic (but intuitively evident) definition identifies genomic complexity with the amount of information a sequence stores about its environment. We investigate the evolution of genomic complexity in populations of digital organisms and monitor in detail the evolutionary transitions that increase complexit...

  11. Complexity, Systems, and Software

    Science.gov (United States)

    2014-08-14

    complex ( Hidden issues; dumbs down operator) 11 Complexity, Systems, and Software Sarah Sheard August 14, 2014 © 2014 Carnegie...August 14, 2014 © 2014 Carnegie Mellon University Addressing Complexity in SoSs Source: SEBOK Wiki System Con truer Strateglc Context

  12. Complexity Near Horizons

    CERN Document Server

    Halyo, Edi

    2015-01-01

    We generalize the concept of complexity near horizons to all nondegenerate black holes. For Schwarzschild black holes, we show that Rindler observers see a complexity change of $S$ during proper time $1/\\kappa$ which corresponds to the creation of a causal patch with proper length $1/\\kappa$ inside the horizon. We attempt to describe complexity in the horizon CFT and the Euclidean picture.

  13. Quaternionic versus complex maps

    Energy Technology Data Exchange (ETDEWEB)

    Asorey, M [Departamento de Fisica Teorica, Universidad de Zaragoza 50009 Zaragoza (Spain); Scolarici, G [Dipartimento di Fisica dell' Universita del Salento and INFN, Sezione di Lecce, I-73100 Lecce (Italy); Solombrino, L [Dipartimento di Fisica dell' Universita del Salento and INFN, Sezione di Lecce, I-73100 Lecce (Italy)

    2007-11-15

    We discuss the relation between completely positive quaternionic maps and the corresponding complex maps obtained via projection operation. In order to illustrate this formalism, we reobtain the (complex) qubit subdynamics of maximally entangled Bell states, as complex projection of unitary dynamics between quaternionic pure states.

  14. Implications of Biospheric Energization

    Science.gov (United States)

    Budding, Edd; Demircan, Osman; Gündüz, Güngör; Emin Özel, Mehmet

    2016-07-01

    Our physical model relating to the origin and development of lifelike processes from very simple beginnings is reviewed. This molecular ('ABC') process is compared with the chemoton model, noting the role of the autocatalytic tuning to the time-dependent source of energy. This substantiates a Darwinian character to evolution. The system evolves from very simple beginnings to a progressively more highly tuned, energized and complex responding biosphere, that grows exponentially; albeit with a very low net growth factor. Rates of growth and complexity in the evolution raise disturbing issues of inherent stability. Autocatalytic processes can include a fractal character to their development allowing recapitulative effects to be observed. This property, in allowing similarities of pattern to be recognized, can be useful in interpreting complex (lifelike) systems.

  15. Synchronization in complex clustered networks

    Institute of Scientific and Technical Information of China (English)

    HUANG Liang; LAI Ying-Cheng; Kwangho PARK; WANG Xingang; LAI Choy Heng; Robert A. GATENBY

    2007-01-01

    Synchronization in complex networks has been an active area of research in recent years. While much effort has been devoted to networks with the small-world and scale-free topology, structurally they are often assumed to have a single, densely connected component. Recently it has also become apparent that many networks in social, biological, and tech-nological systems are clustered, as characterized by a number (or a hierarchy) of sparsely linked clusters, each with dense and complex internal connections. Synchronization is funda-mental to the dynamics and functions of complex clustered networks, but this problem has just begun to be addressed. This paper reviews some progress in this direction by focus-ing on the interplay between the clustered topology and net-work synchronizability. In particular, there are two parame-ters characterizing a clustered network: the intra-cluster and the inter-cluster link density. Our goal is to clarify the roles of these parameters in shaping network synchronizability. By using theoretical analysis and direct numerical simulations of oscillator networks, it is demonstrated that clustered net-works with random inter-cluster links are more synchroniz-able, and synchronization can be optimized when inter-cluster and intra-cluster links match. The latter result has one coun-terintuitive implication: more links, if placed improperly, can actually lead to destruction of synchronization, even though such links tend to decrease the average network distance. It is hoped that this review will help attract attention to the fun-damental problem of clustered structures/synchronization in network science.

  16. Structure of bacterial respiratory complex I.

    Science.gov (United States)

    Berrisford, John M; Baradaran, Rozbeh; Sazanov, Leonid A

    2016-07-01

    Complex I (NADH:ubiquinone oxidoreductase) plays a central role in cellular energy production, coupling electron transfer between NADH and quinone to proton translocation. It is the largest protein assembly of respiratory chains and one of the most elaborate redox membrane proteins known. Bacterial enzyme is about half the size of mitochondrial and thus provides its important "minimal" model. Dysfunction of mitochondrial complex I is implicated in many human neurodegenerative diseases. The L-shaped complex consists of a hydrophilic arm, where electron transfer occurs, and a membrane arm, where proton translocation takes place. We have solved the crystal structures of the hydrophilic domain of complex I from Thermus thermophilus, the membrane domain from Escherichia coli and recently of the intact, entire complex I from T. thermophilus (536 kDa, 16 subunits, 9 iron-sulphur clusters, 64 transmembrane helices). The 95Å long electron transfer pathway through the enzyme proceeds from the primary electron acceptor flavin mononucleotide through seven conserved Fe-S clusters to the unusual elongated quinone-binding site at the interface with the membrane domain. Four putative proton translocation channels are found in the membrane domain, all linked by the central flexible axis containing charged residues. The redox energy of electron transfer is coupled to proton translocation by the as yet undefined mechanism proposed to involve long-range conformational changes. This article is part of a Special Issue entitled Respiratory complex I, edited by Volker Zickermann and Ulrich Brandt.

  17. Complexity, Modeling, and Natural Resource Management

    Directory of Open Access Journals (Sweden)

    Paul Cilliers

    2013-09-01

    Full Text Available This paper contends that natural resource management (NRM issues are, by their very nature, complex and that both scientists and managers in this broad field will benefit from a theoretical understanding of complex systems. It starts off by presenting the core features of a view of complexity that not only deals with the limits to our understanding, but also points toward a responsible and motivating position. Everything we do involves explicit or implicit modeling, and as we can never have comprehensive access to any complex system, we need to be aware both of what we leave out as we model and of the implications of the choice of our modeling framework. One vantage point is never sufficient, as complexity necessarily implies that multiple (independent conceptualizations are needed to engage the system adequately. We use two South African cases as examples of complex systems - restricting the case narratives mainly to the biophysical domain associated with NRM issues - that make the point that even the behavior of the biophysical subsystems themselves are already complex. From the insights into complex systems discussed in the first part of the paper and the lessons emerging from the way these cases have been dealt with in reality, we extract five interrelated generic principles for practicing science and management in complex NRM environments. These principles are then further elucidated using four further South African case studies - organized as two contrasting pairs - and now focusing on the more difficult organizational and social side, comparing the human organizational endeavors in managing such systems.

  18. Learning about knowledge: A complex network approach

    CERN Document Server

    Costa, L F

    2006-01-01

    This article describes an approach to modeling of knowledge acquisition in terms of complex networks and walks. Each subset of knowledge is represented as a node, and relationship between such knowledge are represented as edges. Two types of edges are considered, corresponding to logical equivalence and implication. Multiple conditional implications are also considered, implying that a node can only be reached after visiting previously a set of nodes (the conditions). It is shown that hierarchical networks, involving a series of interconnected layers containing a connected subnetwork, provides a simple and natural means for avoiding deadlocks, i.e. unreachable nodes. The process of knowledge acquisition can then be simulated by considering a single agent moving along the nodes and edges, starting from the lowest layer. Several configurations of such hierarchical knowledge networks are simulated and the performance of the agent quantified in terms of the percentage of visited nodes after each movement. The Bar...

  19. SYSTEMS WITH COMPLEXITY

    Institute of Scientific and Technical Information of China (English)

    WANG Chenghong; ZHANG Lijun

    2004-01-01

    Science of Complexity is a newly emerging branch of natural scienceAlthoughwe still haven't a precise definition, there are some principles for justifying whether a systemis a complex systemThe purpose of this article is to reveal some of such principlesOnthe basis of them, the concept of a system with complexity is proposedThey may helpus to distinguish a real complex system from complicated objects in common senseThenwe propose some fundamental problems faced by the study of systems with complexity.

  20. Complex variables I essentials

    CERN Document Server

    Solomon, Alan D

    2013-01-01

    REA's Essentials provide quick and easy access to critical information in a variety of different fields, ranging from the most basic to the most advanced. As its name implies, these concise, comprehensive study guides summarize the essentials of the field covered. Essentials are helpful when preparing for exams, doing homework and will remain a lasting reference source for students, teachers, and professionals. Complex Variables I includes functions of a complex variable, elementary complex functions, integrals of complex functions in the complex plane, sequences and series, and poles and r

  1. Intrinsic Resistance of Burkholderia cepacia Complex to Benzalkonium Chloride

    OpenAIRE

    Youngbeom Ahn; Jeong Myeong Kim; Ohgew Kweon; Seong-Jae Kim; Jones, Richard C.; Kellie Woodling; Goncalo Gamboa da Costa; LiPuma, John J.; David Hussong; Marasa, Bernard S.; Cerniglia, Carl E.

    2016-01-01

    ABSTRACT Pharmaceutical products that are contaminated with Burkholderia cepacia complex (BCC) bacteria may pose serious consequences to vulnerable patients. Benzyldimethylalkylammonium chloride (BZK) cationic surfactants are extensively used in medical applications and have been implicated in the coselection of antimicrobial resistance. The ability of BCC to degrade BZK, tetradecyldimethylbenzylammonium chloride (C14BDMA-Cl), dodecyldimethylbenzylammonium chloride (C12BDMA-Cl), decyldimethyl...

  2. Complexity Through Nonextensivity

    CERN Document Server

    Bialek, W; Tishby, N; Bialek, William; Nemenman, Ilya; Tishby, Naftali

    2001-01-01

    The problem of defining and studying complexity of a time series has interested people for years. In the context of dynamical systems, Grassberger has suggested that a slow approach of the entropy to its extensive asymptotic limit is a sign of complexity. We investigate this idea further by information theoretic and statistical mechanics techniques and show that these arguments can be made precise, and that they generalize many previous approaches to complexity, in particular unifying ideas from the physics literature with ideas from learning and coding theory; there are even connections of this statistical approach to algorithmic or Kolmogorov complexity. Moreover, a set of simple axioms similar to those used by Shannon in his development of information theory allows us to prove that the divergent part of the subextensive component of the entropy is a unique complexity measure. We classify time series by their complexities and demonstrate that beyond the `logarithmic' complexity classes widely anticipated in...

  3. Photocytotoxic lanthanide complexes

    Indian Academy of Sciences (India)

    Akhtar Hussain; Akhil R Chakravarty

    2012-11-01

    Lanthanide complexes have recently received considerable attention in the field of therapeutic and diagnostic medicines. Among many applications of lanthanides, gadolinium complexes are used as magnetic resonance imaging (MRI) contrast agents in clinical radiology and luminescent lanthanides for bioanalysis, imaging and sensing. The chemistry of photoactive lanthanide complexes showing biological applications is of recent origin. Photodynamic therapy (PDT) is a non-invasive treatment modality of cancer using a photosensitizer drug and light. This review primarily focuses on different aspects of the chemistry of lanthanide complexes showing photoactivated DNA cleavage activity and cytotoxicity in cancer cells. Macrocyclic texaphyrin-lanthanide complexes are known to show photocytotoxicity with the PDT effect in near-IR light. Very recently, non-macrocyclic lanthanide complexes are reported to show photocytotoxicity in cancer cells. Attempts have been made in this perspective article to review and highlight the photocytotoxic behaviour of various lanthanide complexes for their potential photochemotherapeutic applications.

  4. Implications of recent MINER$\

    CERN Document Server

    Wolcott, Jeremy

    2015-01-01

    Among the most important tasks of neutrino oscillation experiments is correctly estimating the parent neutrino energy from the by-products of their interactions. Large uncertainties in our current understanding of such processes can significantly hamper this effort. We explore several recent measurements made using the \\mnv{} detector in the few-GeV NuMI muon neutrino beam at Fermilab: the differential cross-section vs. $Q^2$ for charged-current quasi-elastic scattering, the differential cross-sections vs. pion angle and pion kinetic energy for resonant single charged pion production, and the differential cross-sections vs. pion angle and kinetic energy for coherent pion production. We furthermore discuss their implications for energy reconstruction in oscillation measurements.

  5. Implications of social structure

    DEFF Research Database (Denmark)

    Brask, Josefine Bohr

    Social systems in nature are characterised by heterogeneous social structures. The pattern of social interactions or associations between individuals within populations (i.e. their social network) is typically non-random. Such structuring may have important implications for the expression......, we investigate empirically the role of the social environment of individuals for their communication patterns. Our study species is a song bird, the black-capped chickadee (Poecile atricapillus). The results suggest that individual communication in this species is influenced by features of the local...... social environment of the individual. In the last two studies, we investigate the role of social structure for cooperation in a classic natural system for behavioural research, the Trinidadian guppy (Poecilia reticulata), by means of computer simulations. Cooperation contradicts evolutionary theory...

  6. Complexity Theory and CALL Curriculum in Foreign Language Learning

    Directory of Open Access Journals (Sweden)

    Hassan Soleimani

    2014-05-01

    Full Text Available Complexity theory literally indicates the complexity of a system, behavior, or a process. Its connotative meaning, while, implies dynamism, openness, sensitivity to initial conditions and feedback, and adaptation properties of a system. Regarding English as a Foreign/ Second Language (EFL/ESL this theory emphasizes on the complexity of the process of teaching and learning, including all the properties of a complex system. The purpose of the current study is to discuss the role of CALL as a modern technology in simplifying the process of teaching and learning a new language while integrating into the complexity theory. Nonetheless, the findings obtained from reviewing previously conducted studies in this field confirmed the usefulness of CALL curriculum in EFL/ESL contexts. These findings can also provide pedagogical implications for employing computer as an effective teaching and learning tool. Keywords: Second/foreign language curriculum, CALL, Complexity theory

  7. [Gastrointestinal myoelectric complex].

    Science.gov (United States)

    Aeberhard, P

    1977-03-01

    Complexes of high amplitude action potentials have been shownn to occur in the stomach and duodenum of fasting dogs. These complexes recur at regular intervals as long as the animal is fasting, and they are propagated aborally over the whole lenght of the small bowel. The cyclical pattern is replaced by the digestive of "fed" pattern of activity upon feeding. Therefore the pattern has been known as the interdigestive myoelectrical complex. Studies in herbivorous species however, in which the flow of digesta is more or less continous have show that cyclically recurring migrating complexes can be demonstrated in these species as well. Thus, the term "migratory myoelectrical complex" may be more appropriate. Propagation of the complex is not dependent upon continuity of the bowel wall nor movement of luminal contents. Replacement of the complex by the digestive pattern of activity upon feeding and the restitution of the interdigestive pattern at the end of the digestive phase seem to be under nervous as well as hormonal control. The interdigestive complex in the dog has been looked upon as a "housekeeper" which sweeps the bowel clear of contents at the end of the digestive phase. Aspects of possible physiological significance of the complex are: periodic elimination of refluxed duodenal contents from the stomach and prevention of bacterial colonization of the small bowel by the colonic flora. The existence of propagated complexes has not been demonstrated in man, but there is increasing evidence for cyclical activity which fits the pattern.

  8. The Educational-Industrial Complex.

    Science.gov (United States)

    Brightman, Hank J.; Gutmore, Daniel

    2002-01-01

    Addresses issues of classroom commercialization, product placement, and the ethical implications of corporate influence. Discusses three policy implications: control of technology in the classroom, target marketing to children, and the unintended consequences of the first two. (Contains 39 references.) (SK)

  9. Simplicial complexes of graphs

    CERN Document Server

    Jonsson, Jakob

    2008-01-01

    A graph complex is a finite family of graphs closed under deletion of edges. Graph complexes show up naturally in many different areas of mathematics, including commutative algebra, geometry, and knot theory. Identifying each graph with its edge set, one may view a graph complex as a simplicial complex and hence interpret it as a geometric object. This volume examines topological properties of graph complexes, focusing on homotopy type and homology. Many of the proofs are based on Robin Forman's discrete version of Morse theory. As a byproduct, this volume also provides a loosely defined toolbox for attacking problems in topological combinatorics via discrete Morse theory. In terms of simplicity and power, arguably the most efficient tool is Forman's divide and conquer approach via decision trees; it is successfully applied to a large number of graph and digraph complexes.

  10. Measuring static complexity

    Directory of Open Access Journals (Sweden)

    Ben Goertzel

    1992-01-01

    Full Text Available The concept of “pattern” is introduced, formally defined, and used to analyze various measures of the complexity of finite binary sequences and other objects. The standard Kolmogoroff-Chaitin-Solomonoff complexity measure is considered, along with Bennett's ‘logical depth’, Koppel's ‘sophistication'’, and Chaitin's analysis of the complexity of geometric objects. The pattern-theoretic point of view illuminates the shortcomings of these measures and leads to specific improvements, it gives rise to two novel mathematical concepts--“orders” of complexity and “levels” of pattern, and it yields a new measure of complexity, the “structural complexity”, which measures the total amount of structure an entity possesses.

  11. On Complex Random Variables

    Directory of Open Access Journals (Sweden)

    Anwer Khurshid

    2012-07-01

    Full Text Available Normal 0 false false false EN-US X-NONE X-NONE In this paper, it is shown that a complex multivariate random variable  is a complex multivariate normal random variable of dimensionality if and only if all nondegenerate complex linear combinations of  have a complex univariate normal distribution. The characteristic function of  has been derived, and simpler forms of some theorems have been given using this characterization theorem without assuming that the variance-covariance matrix of the vector  is Hermitian positive definite. Marginal distributions of  have been given. In addition, a complex multivariate t-distribution has been defined and the density derived. A characterization of the complex multivariate t-distribution is given. A few possible uses of this distribution have been suggested.

  12. Complex networks and computing

    Institute of Scientific and Technical Information of China (English)

    Shuigeng ZHOU; Zhongzhi ZHANG

    2009-01-01

    @@ Nowadays complex networks are pervasive in various areas of science and technology. Popular examples of complex networks include the Internet, social networks of collaboration, citations and co-authoring, as well as biological networks such as gene and protein interactions and others. Complex networks research spans across mathematics, computer science, engineering, biology and the social sciences. Even in computer science area, increasing problems are either found to be related to complex networks or studied from the perspective of complex networks, such as searching on Web and P2P networks, routing in sensor networks, language processing, software engineering etc. The interaction and mergence of complex networks and computing is inspiring new chances and challenges in computer science.

  13. Complex Systems and Dependability

    CERN Document Server

    Zamojski, Wojciech; Sugier, Jaroslaw

    2012-01-01

    Typical contemporary complex system is a multifaceted amalgamation of technical, information, organization, software and human (users, administrators and management) resources. Complexity of such a system comes not only from its involved technical and organizational structure but mainly from complexity of information processes that must be implemented in the operational environment (data processing, monitoring, management, etc.). In such case traditional methods of reliability analysis focused mainly on technical level are usually insufficient in performance evaluation and more innovative meth

  14. Recognizing dualizing complexes

    OpenAIRE

    Jorgensen, Peter

    2003-01-01

    Let A be a noetherian local commutative ring and let M be a suitable complex of A-modules. This paper proves that M is a dualizing complex for A if and only if the trivial extension A \\ltimes M is a Gorenstein Differential Graded Algebra. As a corollary follows that A has a dualizing complex if and only if it is a quotient of a Gorenstein local Differential Graded Algebra.

  15. Genetics of complex diseases.

    Science.gov (United States)

    Motulsky, Arno G

    2006-02-01

    Approaches to the study of the genetic basis of common complex diseases and their clinical applications are considered. Monogenic Mendelian inheritance in such conditions is infrequent but its elucidation may help to detect pathogenic mechanisms in the more common variety of complex diseases. Involvement by multiple genes in complex diseases usually occurs but the isolation and identification of specific genes so far has been exceptional. The role of common polymorphisms as indicators of disease risk in various studies is discussed.

  16. Full disclosure: Unraveling the mystery of a wide complex tachycardia

    Directory of Open Access Journals (Sweden)

    Mohammed Zahrani

    2017-01-01

    Full Text Available Wide complex tachycardia is not uncommon in patients with underlying structural heart disease and reduced ejection fraction. It is important to make the correct diagnosis as it carries prognostic and clinical implications. We present a case of a challenging wide complex rhythm detected on remote telemetry monitoring. This case outlines the differential diagnosis of a wide complex tachycardia and the clues to making a diagnosis of artifact. It highlights the importance of correct diagnosis as an incorrect diagnosis may lead to inappropriate treatments and unnecessary investigations.

  17. Full disclosure: Unraveling the mystery of a wide complex tachycardia.

    Science.gov (United States)

    Zahrani, Mohammed; Wolfe, Kevin; Seifer, Colette

    2017-01-01

    Wide complex tachycardia is not uncommon in patients with underlying structural heart disease and reduced ejection fraction. It is important to make the correct diagnosis as it carries prognostic and clinical implications. We present a case of a challenging wide complex rhythm detected on remote telemetry monitoring. This case outlines the differential diagnosis of a wide complex tachycardia and the clues to making a diagnosis of artifact. It highlights the importance of correct diagnosis as an incorrect diagnosis may lead to inappropriate treatments and unnecessary investigations.

  18. Berger Engineering Complex

    Data.gov (United States)

    Federal Laboratory Consortium — Description/History: Engineering laboratory The Berger Lab Complex is a multi-purpose building with professional office, 100 seat auditorium, general purpose labs,...

  19. Higher Koszul complexes

    Institute of Scientific and Technical Information of China (English)

    叶郁; 张璞

    2003-01-01

    In this paper we generalize the Koszul complexes and Koszul algebras, and introduce the higherKoszul (t-Koszul) complexes and higher Koszul algebras, where t ≥ 2 is an integer. We prove that an algebra ist-Koszul if and only if its t-Koszul complex is augmented, i.e. the higher degree (≥ 1) homologies vanish. Forarbitrary t-Koszul algebra , we also give a description of the structure of the cohomology algebra Ext ( 0, 0)by using the t-Koszul complexes, where the 0 is the direct sum of the simples.

  20. Premature Ventricular Complexes and Premature Ventricular Complex Induced Cardiomyopathy.

    Science.gov (United States)

    Latchamsetty, Rakesh; Bogun, Frank

    2015-09-01

    Presentation, prognosis, and management of premature ventricular complexes (PVCs) vary significantly among patients and depend on PVC characteristics as well as patient comorbidities. Presentation can range from incidental discovery in an asymptomatic patient to debilitating heart failure. Prognosis depends on, among other factors, the presence or absence of structural heart disease, PVC burden and other factors detailed in this review. Our understanding of the clinical significance of frequent PVCs, particularly as it relates to development of cardiomyopathy, has advanced greatly in the past decade. In this article, we explore the mechanisms governing PVC initiation and discuss prevalence and frequency of PVCs in the general population. We also explore prognostic implications based on PVC frequency as well as the presence or absence of underlying heart disease. We then take a focused look at PVC-induced cardiomyopathy and identify predictors for developing cardiomyopathy. Finally, we discuss clinical evaluation and management of patients presenting with frequent PVCs. Management can include clinical observation, addressing reversible causes, lifestyle modification, pharmacotherapy, or catheter ablation.

  1. Conformações distorcida e planar do anel porfirínico em complexos e hemoproteínas: propriedades físico-químicas e implicações espectroscópicas Ruffled and planar conformations of the porphyrin ring in complexes and heme proteins: physical-chemistry properties and spectroscopic implications

    Directory of Open Access Journals (Sweden)

    Leonardo M. Moreira

    2004-12-01

    Full Text Available The different conformations of porphyrin rings are strongly related with the electronic configurations of the metallic center in the ferriheme coordination compounds and heme proteins. The usual electronic configuration, (d xy²(d xz,d yz ³ presents a planar conformation of the porphyrin ring and the less common electronic configuration (d xz,d yz4(d xy ¹ occurs in the case of a strongly ruffled ring. These states are responsible for distinct chemical and spectroscopic properties of the porphyrin systems. The importance of the ring conformations, their characteristics, implications and applications are discussed.

  2. Complex networks for streamflow dynamics

    Directory of Open Access Journals (Sweden)

    B. Sivakumar

    2014-07-01

    Full Text Available Streamflow modeling is an enormously challenging problem, due to the complex and nonlinear interactions between climate inputs and landscape characteristics over a wide range of spatial and temporal scales. A basic idea in streamflow studies is to establish connections that generally exist, but attempts to identify such connections are largely dictated by the problem at hand and the system components in place. While numerous approaches have been proposed in the literature, our understanding of these connections remains far from adequate. The present study introduces the theory of networks, and in particular complex networks, to examine the connections in streamflow dynamics, with a particular focus on spatial connections. Monthly streamflow data observed over a period of 52 years from a large network of 639 monitoring stations in the contiguous United States are studied. The connections in this streamflow network are examined using the concept of clustering coefficient, which is a measure of local density and quantifies the network's tendency to cluster. The clustering coefficient analysis is performed with several different threshold levels, which are based on correlations in streamflow data between the stations. The clustering coefficient values of the 639 stations are used to obtain important information about the connections in the network and their extent, similarity and differences between stations/regions, and the influence of thresholds. The relationship of the clustering coefficient with the number of links/actual links in the network and the number of neighbors is also addressed. The results clearly indicate the usefulness of the network-based approach for examining connections in streamflow, with important implications for interpolation and extrapolation, classification of catchments, and predictions in ungaged basins.

  3. The perpetuation of menstrual shame: implications and directions.

    Science.gov (United States)

    McKeever, P

    1984-01-01

    In North America, many taboos and myths related to menstruating women have been officially discredited. Unfortunately however, menstruation continues to be imbued with complex, largely negative meanings. This paper examines how menstrual shame and embarrassment are perpetuated through common folk wisdom, educational methods, and commercial advertising. A discussion of female socialization illustrates how girls arrive at puberty with attitudes that reflect largely negative cultural stereotypes. Implications and directions for education and research which are intended to counterbalance the prevalent menstrual ideology are presented.

  4. Nanotechnology Foresight: How Can We Explore Employment and Skills Implications?

    OpenAIRE

    Ian Miles

    2010-01-01

    Policymakers responsible for improving the skill base needed for future economic development must assess the implications of radical technological change in the future. The example selected here is in nanoscience and nanotechnology. The objective of this paper is to demonstrate the importance of using more than one scenario of long term development when assessing such a complex issue as technology development and the demand for skills. Scenario forecasting is appropriately based on assessing ...

  5. Barriers to Research and Implications for Training Counselors

    Directory of Open Access Journals (Sweden)

    James R Ruby

    2013-03-01

    Full Text Available Research is an important part of quality clinical practice in the field of counseling. This study addresses the constraints that produce a gap in master’s level practitioner research among counselors in Illinois. Ninety-nine master’s level clinicians responded to surveys and answered a series of questions regarding what constrains them from being more involved in research. These respondents provided valuable feedback regarding possible recommendations for training that might encourage increased research activity for future master’s level counselors. Training improvements such as mentored research activity and training in less complex research methods were indicated. Keywords: Clinical practice, Implications, Barriers to research, less complex research

  6. Adaptive Leadership: Fighting Complexity with Complexity

    Science.gov (United States)

    2014-06-01

    complex tasks.30 An astonishing level of sophistication arises out of the intricate combination of these simple insect minds. 23 Snowden and Boone, “A...system: individuals, with little or no central oversight, perform simple tasks: posting Web pages and linking to other Web pages…and the co- evolutionary ...existence today. 31 Bert Hölldobler and Edward Osborne Wilson, The Superorganism: The Beauty, Elegance, and Strangeness of Insect Societies (New York, NY

  7. Collaborative Purchasing of Complex Technologies in Healthcare

    DEFF Research Database (Denmark)

    Gobbi, Chiara; Hsuan, Juliana

    2015-01-01

    the needs of the buyers within the purchasing group) and customer alignment (i.e. aligning buyers’ needs with the vendors offering strategies) and investigate how they manifest in the case of CP of complex technology in the Danish National Healthcare System. Findings: – Shareholder alignment requires...... appropriate management of the relationships, expertise and guidance in simplifying procedures and effective management of the purchasing group. Customer alignment is facilitated by buyers’ understating of the vendor’s design options, which are moderated by the vendor’s design strategies. Research limitations....../implications: – The findings and generalizations from a single case study are limited to the complexity of the purchased technology and the specific cultural context. However the paper represents the first explorative study that poses the attention on the relevance of shareholder and customer alignment in CP. Practical...

  8. Speech perception as complex auditory categorization

    Science.gov (United States)

    Holt, Lori L.

    2002-05-01

    Despite a long and rich history of categorization research in cognitive psychology, very little work has addressed the issue of complex auditory category formation. This is especially unfortunate because the general underlying cognitive and perceptual mechanisms that guide auditory category formation are of great importance to understanding speech perception. I will discuss a new methodological approach to examining complex auditory category formation that specifically addresses issues relevant to speech perception. This approach utilizes novel nonspeech sound stimuli to gain full experimental control over listeners' history of experience. As such, the course of learning is readily measurable. Results from this methodology indicate that the structure and formation of auditory categories are a function of the statistical input distributions of sound that listeners hear, aspects of the operating characteristics of the auditory system, and characteristics of the perceptual categorization system. These results have important implications for phonetic acquisition and speech perception.

  9. Complex Dynamics in Information Sharing Networks

    Science.gov (United States)

    Cronin, Bruce

    This study examines the roll-out of an electronic knowledge base in a medium-sized professional services firm over a six year period. The efficiency of such implementation is a key business problem in IT systems of this type. Data from usage logs provides the basis for analysis of the dynamic evolution of social networks around the depository during this time. The adoption pattern follows an "s-curve" and usage exhibits something of a power law distribution, both attributable to network effects, and network position is associated with organisational performance on a number of indicators. But periodicity in usage is evident and the usage distribution displays an exponential cut-off. Further analysis provides some evidence of mathematical complexity in the periodicity. Some implications of complex patterns in social network data for research and management are discussed. The study provides a case study demonstrating the utility of the broad methodological approach.

  10. Complexity and valued landscapes

    Science.gov (United States)

    Michael M. McCarthy

    1979-01-01

    The variable "complexity," or "diversity," has received a great deal of attention in recent research efforts concerned with visual resource management, including the identification of complexity as one of the primary evaluation measures. This paper describes research efforts that support the hypothesis that the landscapes we value are those with...

  11. C-60 complexation revisited

    NARCIS (Netherlands)

    Williams, R.M.; Verhoeven, J.M.

    1994-01-01

    In the recent paper by Atwood et al. (Nature 368, 229-231, 1994) on a purification procedure for C60 and C70 by selective complexation with calixarenes, it was implied that we had previously studied the complexation of C60 with cyclodextrins (Williams, R. M. & Verhoeven, J. W., Recl. Trav. Chim.

  12. Complexity, Robustness, and Performance

    NARCIS (Netherlands)

    B. Visser (Bauke)

    2002-01-01

    textabstractThis paper analyses the relationship between organizational complexity ( the degree of detail of information necessary to correctly assign agents to positions), robustness (the relative loss of performance due to mis-allocated agents), and performance. More complex structures are not

  13. Introductory complex analysis

    CERN Document Server

    Silverman, Richard A

    1984-01-01

    A shorter version of A. I. Markushevich's masterly three-volume Theory of Functions of a Complex Variable, this edition is appropriate for advanced undergraduate and graduate courses in complex analysis. Numerous worked-out examples and more than 300 problems, some with hints and answers, make it suitable for independent study. 1967 edition.

  14. The visibility complex

    NARCIS (Netherlands)

    Pocchiola, M; Vegter, G

    1996-01-01

    We introduce the visibility complex (rr 2-dimensional regular cell complex) of a collection of n pairwise disjoint convex obstacles in the plane. It can be considered as a subdivision of the set of free rays (i.e., rays whose origins lie in free space, the complement of the obstacles). Its cells cor

  15. Schools and Complexity

    Science.gov (United States)

    Trombly, Christopher E.

    2014-01-01

    As schools, districts, and the overall education system are complex entities, both the approaches taken to improve them and the methods used to study them must be similarly complex. Simple solutions imposed with no regard for schools' or districts' unique contexts hold little promise, while seemingly insignificant differences between those…

  16. Complexity and Relations

    Science.gov (United States)

    Lancaster, Jeanette Elizabeth

    2013-01-01

    A central feature of complexity is that it is based on non-linear, recursive relations. However, in most current accounts of complexity such relations, while non-linear, are based on the reductive relations of a Newtonian onto-epistemological framework. This means that the systems that are emergent from the workings of such relations are a…

  17. Complexity, Robustness, and Performance

    NARCIS (Netherlands)

    B. Visser (Bauke)

    2002-01-01

    textabstractThis paper analyses the relationship between organizational complexity ( the degree of detail of information necessary to correctly assign agents to positions), robustness (the relative loss of performance due to mis-allocated agents), and performance. More complex structures are not nec

  18. Conducting metal dithiolate complexes

    DEFF Research Database (Denmark)

    Underhill, A. E.; Ahmad, M. M.; Turner, D. J.;

    1985-01-01

    Further work on the chemical composition of the one-dimensional metallic metal dithiolene complex Li-Pt(mnt) is reported. The electrical conduction and thermopower properties of the nickel and palladium complexes are reported and compared with those of the platinum compound...

  19. Complexity dimensions and learnability

    NARCIS (Netherlands)

    S-H. Nienhuys-Cheng (Shan-Hwei); M. Polman (Mark)

    1992-01-01

    textabstractA stochastic model of learning from examples has been introduced by Valiant [1984]. This PAC-learning model (PAC = probably approximately correct) reflects differences in complexity of concept classes, i.e. very complex classes are not efficiently PAC-learnable. Blumer et al. [1989

  20. Implications of antisocial parents.

    Science.gov (United States)

    Torry, Zachary D; Billick, Stephen B

    2011-12-01

    Antisocial behavior is a socially maladaptive and harmful trait to possess. This can be especially injurious for a child who is raised by a parent with this personality structure. The pathology of antisocial behavior implies traits such as deceitfulness, irresponsibility, unreliability, and an incapability to feel guilt, remorse, or even love. This is damaging to a child's emotional, cognitive, and social development. Parents with this personality makeup can leave a child traumatized, empty, and incapable of forming meaningful personal relationships. Both genetic and environmental factors influence the development of antisocial behavior. Moreover, the child with a genetic predisposition to antisocial behavior who is raised with a parental style that triggers the genetic liability is at high risk for developing the same personality structure. Antisocial individuals are impulsive, irritable, and often have no concerns over their purported responsibilities. As a parent, this can lead to erratic discipline, neglectful parenting, and can undermine effective care giving. This paper will focus on the implications of parents with antisocial behavior and the impact that this behavior has on attachment as well as on the development of antisocial traits in children.

  1. Leading healthcare in complexity.

    Science.gov (United States)

    Cohn, Jeffrey

    2014-12-01

    Healthcare institutions and providers are in complexity. Networks of interconnections from relationships and technology create conditions in which interdependencies and non-linear dynamics lead to surprising, unpredictable outcomes. Previous effective approaches to leadership, focusing on top-down bureaucratic methods, are no longer effective. Leading in complexity requires leaders to accept the complexity, create an adaptive space in which innovation and creativity can flourish and then integrate the successful practices that emerge into the formal organizational structure. Several methods for doing adaptive space work will be discussed. Readers will be able to contrast traditional leadership approaches with leading in complexity. They will learn new behaviours that are required of complexity leaders, along with challenges they will face, often from other leaders within the organization.

  2. Supporting complex search tasks

    DEFF Research Database (Denmark)

    Gäde, Maria; Hall, Mark; Huurdeman, Hugo

    2015-01-01

    There is broad consensus in the field of IR that search is complex in many use cases and applications, both on the Web and in domain specific collections, and both professionally and in our daily life. Yet our understanding of complex search tasks, in comparison to simple look up tasks, is fragme......There is broad consensus in the field of IR that search is complex in many use cases and applications, both on the Web and in domain specific collections, and both professionally and in our daily life. Yet our understanding of complex search tasks, in comparison to simple look up tasks......, and recommendations, and supporting exploratory search to sensemaking and analytics, UI and UX design pose an overconstrained challenge. How do we know that our approach is any good? Supporting complex search task requires new collaborations across the whole field of IR, and the proposed workshop will bring together...

  3. Ageing and its implications

    Directory of Open Access Journals (Sweden)

    Jayanthi P

    2010-01-01

    Full Text Available Ageing processes are defined as those that increase the susceptibility of individuals, as they grow older, to the factors that eventually lead to death. It is a complex multi-factorial process, where several factors may interact simultaneously and may operate at many levels of functional organization. The heterogeneity of ageing phenotype among individuals of the same species and differences in longevity among species are due to the contribution of both genetic and environmental factors in shaping the life span. The various theories of ageing and their proposed roles are discussed in this review.

  4. Complex and singular solutions of KdV and MKdV equations

    Science.gov (United States)

    Buti, B.; Rao, N. N.; Khadkikar, S. B.

    1986-01-01

    The Korteweg-de Vries (KdV) and the modified Korteweg-de Vries (MKdV) equations are shown to have, besides the regular real solutions, exact regular complex as well as singular solutions. The singular solution for the KdV is real but for the MKdV it is pure imaginary. Implications of the complex solutions are discussed.

  5. Identification of a ubiquitin-protein ligase subunit within the CCR4-NOT transcription repressor complex

    NARCIS (Netherlands)

    Albert, TK; Hanzawa, H; Legtenberg, YIA; de Ruwe, MJ; van den Heuvel, FAJ; Collart, MA; Boelens, R; Timmers, HTM

    2002-01-01

    The RING finger protein CNOT4 is a component of the CCR4-NOT complex. This complex is implicated in repression of RNA polymerase II transcription. Here we demonstrate that CNOT4 functions as a ubiquitin-protein ligase (E3). We show that the unique C4C4 RING domain of CNOT4 interacts with a subset of

  6. Significance of respirasomes for the assembly/stability of human respiratory chain complex I.

    Science.gov (United States)

    Schägger, Hermann; de Coo, René; Bauer, Matthias F; Hofmann, Sabine; Godinot, Catherine; Brandt, Ulrich

    2004-08-27

    We showed that the human respiratory chain is organized in supramolecular assemblies of respiratory chain complexes, the respirasomes. The mitochondrial complexes I (NADH dehydrogenase) and III (cytochrome c reductase) form a stable core respirasome to which complex IV (cytochrome c oxidase) can also bind. An analysis of the state of respirasomes in patients with an isolated deficiency of single complexes provided evidence that the formation of respirasomes is essential for the assembly/stability of complex I, the major entry point of respiratory chain substrates. Genetic alterations leading to a loss of complex III prevented respirasome formation and led to the secondary loss of complex I. Therefore, primary complex III assembly deficiencies presented as combined complex III/I defects. This dependence of complex I assembly/stability on respirasome formation has important implications for the diagnosis of mitochondrial respiratory chain disorders.

  7. Neutrino Experiments and Their Implications

    OpenAIRE

    Balantekin, A. B.

    2004-01-01

    Recent developments in solar, reactor, and accelerator neutrino physics are reviewed. Implications for neutrino physics, solar physics, nuclear two-body physics, and r-process nucleosynthesis are briefly discussed.

  8. Tuberculosis: the implications for anaesthesia

    African Journals Online (AJOL)

    Anaesthetics Supplement: Tuberculosis: the implications for anaesthesia. S Afr Fam Pract 2014 .... quicker results (within two hours), as well as information on rifampicin .... management of patients with active tuberculosis.21. Elective surgery ...

  9. Complexation and molecular modeling studies of europium(III)-gallic acid-amino acid complexes.

    Science.gov (United States)

    Taha, Mohamed; Khan, Imran; Coutinho, João A P

    2016-04-01

    With many metal-based drugs extensively used today in the treatment of cancer, attention has focused on the development of new coordination compounds with antitumor activity with europium(III) complexes recently introduced as novel anticancer drugs. The aim of this work is to design new Eu(III) complexes with gallic acid, an antioxida'nt phenolic compound. Gallic acid was chosen because it shows anticancer activity without harming health cells. As antioxidant, it helps to protect human cells against oxidative damage that implicated in DNA damage, cancer, and accelerated cell aging. In this work, the formation of binary and ternary complexes of Eu(III) with gallic acid, primary ligand, and amino acids alanine, leucine, isoleucine, and tryptophan was studied by glass electrode potentiometry in aqueous solution containing 0.1M NaNO3 at (298.2 ± 0.1) K. Their overall stability constants were evaluated and the concentration distributions of the complex species in solution were calculated. The protonation constants of gallic acid and amino acids were also determined at our experimental conditions and compared with those predicted by using conductor-like screening model for realistic solvation (COSMO-RS) model. The geometries of Eu(III)-gallic acid complexes were characterized by the density functional theory (DFT). The spectroscopic UV-visible and photoluminescence measurements are carried out to confirm the formation of Eu(III)-gallic acid complexes in aqueous solutions.

  10. Stable Spirocyclic Meisenheimer Complexes

    Directory of Open Access Journals (Sweden)

    Gonzalo Guirado

    2008-06-01

    Full Text Available Meisenheimer complexes are important intermediates in Nucleophilic Aromatic Substitution Reactions (SNAr. They are formed by the addition of electron rich species to polynitro aromatic compounds or aromatic compounds with strong electron withdrawing groups. It is possible to distinguish two types of Meisenheimer or σ-complexes, the σHcomplex or σX-complex (also named ipso, depending on the aromatic ring position attacked by the nucleophile (a non-substituted or substituted one, respectively. Special examples of σX- or ipso-complexes are formed through intermediate spiro adducts, via intramolecular SNAr. Some of these spirocyclic Meisenheimer complexes, a type of σXcomplex, are exceptionally stable in solution and/or as solids. They can be isolated and characterized using X-ray, and various spectroscopic techniques such as NMR, UV-Vis, IR, and fluorescence. A few of these stable spirocyclic Meisenheimer complexes are zwitterionic and exhibit interesting photophysical and redox properties. We will review recent advances, synthesis and potential applications of these stable spirocyclic Meisenheimer complexes.

  11. Principles of assembly reveal a periodic table of protein complexes.

    Science.gov (United States)

    Ahnert, Sebastian E; Marsh, Joseph A; Hernández, Helena; Robinson, Carol V; Teichmann, Sarah A

    2015-12-11

    Structural insights into protein complexes have had a broad impact on our understanding of biological function and evolution. In this work, we sought a comprehensive understanding of the general principles underlying quaternary structure organization in protein complexes. We first examined the fundamental steps by which protein complexes can assemble, using experimental and structure-based characterization of assembly pathways. Most assembly transitions can be classified into three basic types, which can then be used to exhaustively enumerate a large set of possible quaternary structure topologies. These topologies, which include the vast majority of observed protein complex structures, enable a natural organization of protein complexes into a periodic table. On the basis of this table, we can accurately predict the expected frequencies of quaternary structure topologies, including those not yet observed. These results have important implications for quaternary structure prediction, modeling, and engineering. Copyright © 2015, American Association for the Advancement of Science.

  12. Applying complexity theory: a review to inform evaluation design.

    Science.gov (United States)

    Walton, Mat

    2014-08-01

    Complexity theory has increasingly been discussed and applied within evaluation literature over the past decade. This article reviews the discussion and use of complexity theory within academic journal literature. The aim is to identify the issues to be considered when applying complexity theory to evaluation. Reviewing 46 articles, two groups of themes are identified. The first group considers implications of applying complexity theory concepts for defining evaluation purpose, scope and units of analysis. The second group of themes consider methodology and method. Results provide a starting point for a configuration of an evaluation approach consistent with complexity theory, whilst also identifying a number of design considerations to be resolved within evaluation planning. Copyright © 2014 Elsevier Ltd. All rights reserved.

  13. Understanding complex urban systems multidisciplinary approaches to modeling

    CERN Document Server

    Gurr, Jens; Schmidt, J

    2014-01-01

    Understanding Complex Urban Systems takes as its point of departure the insight that the challenges of global urbanization and the complexity of urban systems cannot be understood – let alone ‘managed’ – by sectoral and disciplinary approaches alone. But while there has recently been significant progress in broadening and refining the methodologies for the quantitative modeling of complex urban systems, in deepening the theoretical understanding of cities as complex systems, or in illuminating the implications for urban planning, there is still a lack of well-founded conceptual thinking on the methodological foundations and the strategies of modeling urban complexity across the disciplines. Bringing together experts from the fields of urban and spatial planning, ecology, urban geography, real estate analysis, organizational cybernetics, stochastic optimization, and literary studies, as well as specialists in various systems approaches and in transdisciplinary methodologies of urban analysis, the volum...

  14. MARITIME VIOLENCE : IMPLICATIONS TO MALAYSIA

    OpenAIRE

    Nurulizwan Ahmad Zubir

    2014-01-01

    Abstract Maritime Piracy has been a serious threat to the international community especially in the SoutheastAsia region. This threat has caused tremendous implications towards the world economy, environment,political stability of the nations involved because 45% of the shipping company passes through theSoutheast Asia. The worrying fact is that these attacks were committed by terrorists as well as traditionalmaritime pirates. This paper examines on the implications of maritime crime in M...

  15. PREFACE: Polymers and Complex Matter

    Science.gov (United States)

    von Ferber, Christian

    2005-05-01

    This special issue, in honour of Lothar Schäfer on the occasion of his 60th birthday, focuses on polymers and complex matter and covers a broad range of topics both in terms of subject matter and methods applied. This reflects the wide and open minded interests of the honoree. Lothar Schäfer began his career in Heidelberg working on theoretical nuclear physics with H A Weidenmüller. Following a stay at the CEN Saclay in 1974, he turned to the field of critical phenomena. He made fundamental contributions to the subject of disordered systems, in particular on Goldstone modes with F J Wegner and on Anderson localization with A U Pruisken. With T A Witten he formulated a truly field theoretic description of general polymer solutions. Polymers in solution and the renormalization group approach to their experimentally accessible properties have, since 1980 in Hannover and 1983 in Essen, been his primary field of research summarized in his book Excluded Volume Effects in Polymer Solutions as Explained by the Renormalization Group covering `all you ought to know' on the subject. This work is complemented by analytical studies of polymer dynamics. The subjects contained in this special issue encompass soft matter and its rheology, polymers in confinement and their role in short- and long-range colloidal interactions: discussing lenses, dumbbells, rods and dendrimers. Special topics are short chains, directed molecules and gas permeation through polymers. Applications of polymer theory to biological systems include the interactions between DNA molecules and between DNA and proteins and the polymerization of the actin skeleton. Work on random matrix theory, functional renormalization and ageing is devoted to the implications of disorder. Finally, more general aspects of the field theory of polymers and complex matter are discussed, like the Hubbard-Stratonovich transformation, renormalization of polymer field theory, exact renormalization group equations, percolation and

  16. Selenophene transition metal complexes

    Energy Technology Data Exchange (ETDEWEB)

    White, Carter James [Iowa State Univ., Ames, IA (United States)

    1994-07-27

    This research shows that selenophene transition metal complexes have a chemistry that is similar to their thiophene analogs. Selenophene coordination has been demonstrated and confirmed by molecular structure in both the η5- and the η1(Se)-coordination modes. The reaction chemistry of selenophene complexes closely resembles that of the analogous thiophene complexes. One major difference, however, is that selenophene is a better donor ligand than thiophene making the selenophene complexes more stable than the corresponding thiophene complexes. The 77Se NMR chemical shift values for selenophene complexes fall within distinct regions primarily depending on the coordination mode of the selenophene ligand. In the final paper, the C-H bond activation of η1(S)-bound thiophenes, η1(S)-benzothiophene and η1(Se)-bound selenophenes has been demonstrated. The deprotonation and rearrangement of the η1(E)-bound ligand to the carbon bound L-yl complex readily occurs in the presence of base. Reprotonation with a strong acid gives a carbene complex that is unreactive towards nucleophilic attack at the carbene carbon and is stable towards exposure to air. The molecular structure of [Cp(NO)(PPh3)Re(2-benzothioenylcarbene)]O3SCF3 was determined and contains a Re-C bond with substantial double bond character. Methyl substitution for the thienylcarbene or selenylcarbene gives a carbene that rearranges thermally to give back the η1(E)-bound complex. Based on these model reactions, a new mechanism for the H/D exchange of thiophene over the hydrodesulfurization catalyst has been proposed.

  17. U-Pb ages, geochemistry, C-O-Nd-Sr-Hf isotopes and petrogenesis of the Catalão II carbonatitic complex (Alto Paranaíba Igneous Province, Brazil): implications for regional-scale heterogeneities in the Brazilian carbonatite associations

    Science.gov (United States)

    Guarino, Vincenza; Wu, Fu-Yuan; Melluso, Leone; de Barros Gomes, Celso; Tassinari, Colombo Celso Gaeta; Ruberti, Excelso; Brilli, Mauro

    2017-09-01

    The Catalão II carbonatitic complex is part of the Alto Paranaíba Igneous Province (APIP), central Brazil, close to the Catalão I complex. Drill-hole sampling and detailed mineralogical and geochemical study point out the existence of ultramafic lamprophyres (phlogopite-picrites), calciocarbonatites, ferrocarbonatites, magnetitites, apatitites, phlogopitites and fenites, most of them of cumulitic origin. U-Pb data have constrained the age of Catalão I carbonatitic complex between 78 ± 1 and 81 ± 4 Ma. The initial strontium, neodymium and hafnium isotopic data of Catalão II (87Sr/86Sri = 0.70503-0.70599; ɛNdi = -6.8 to -4.7; 176Hf/177Hf = 0.28248-0.28249; ɛHfi = -10.33 to -10.8) are similar to the isotopic composition of the Catalão I complex and fall within the field of APIP kimberlites, kamafugites and phlogopite-picrites, indicating the provenance from an old lithospheric mantle source. Carbon isotopic data for Catalão II carbonatites (δ13C = -6.35 to -5.68 ‰) confirm the mantle origin of the carbon for these rocks. The origin of Catalão II cumulitic rocks is thought to be caused by differential settling of the heavy phases (magnetite, apatite, pyrochlore and sulphides) in a magma chamber repeatedly filled by carbonatitic/ferrocarbonatitic liquids ( s.l.). The Sr-Nd isotopic composition of the Catalão II rocks matches those of APIP rocks and is markedly different from the isotopic features of alkaline-carbonatitic complexes in the southernmost Brazil. The differences are also observed in the lithologies and the magmatic affinity of the igneous rocks found in the two areas, thus demonstrating the existence of regional-scale heterogeneity in the mantle sources underneath the Brazilian platform.

  18. Controllability of Complex Systems

    Science.gov (United States)

    Slotine, Jean-Jacques

    2013-03-01

    We review recent work on controllability of complex systems. We also discuss the interplay of our results with questions of synchronization, and point out key directions of future research. Work done in collaboration with Yang-Yu Liu, Center for Complex Network Research and Departments of Physics, Computer Science and Biology, Northeastern University and Center for Cancer Systems Biology, Dana-Farber Cancer Institute; and Albert-László Barabási, Center for Complex Network Research and Departments of Physics, Computer Science and Biology, Northeastern University; Center for Cancer Systems Biology, Dana-Farber Cancer Institute; and Department of Medicine, Brigham and Women's Hospital, Harvard Medical School.

  19. Managing complex child law

    DEFF Research Database (Denmark)

    Svendsen, Idamarie Leth

    2017-01-01

    The article reports the findings of a qualitative study of Danish legal regulation of the public initial assessment of children and young persons and municipal practitioners’ decision-making under this regulation. The regulation mirrors new and complex relations between families and society...... in the form of 7 individual vignette interviews with municipal mid-level managers and professional consultants in five Danish municipalities. The study finds that the regulation is more complex than it looks, and that the complexity is handled through simplifying decision-making patterns that can be seen...

  20. On diagram-chasing in double complexes

    CERN Document Server

    Bergman, George M

    2011-01-01

    Diagram-chasing arguments frequently lead to "magical" relations between distant points of diagrams: exactness implications, connecting morphisms, etc.. These long connections are usually composites of short "unmagical" connections, but the latter, and the objects they join, are not visible in the proofs. I try to remedy this situation. Given a double complex in an abelian category, we consider, for each object A of the complex, the familiar horizontal and vertical homology objects at A, and two other objects, which we name the "donor" A_{\\box} and and the "receptor" ^{\\box}A at A. For each arrow of the double complex, we prove the exactness of a 6-term sequence of these objects (the "Salamander Lemma"). Standard results such as the 3x3-Lemma, the Snake Lemma, and the long exact sequence of homology associated with a short exact sequence of complexes, are obtained as easy applications of this lemma. We then obtain some generalizations of the last of the above examples, getting various exact diagrams from doub...

  1. Sepsis: implication for nursing

    Directory of Open Access Journals (Sweden)

    Fabio Bertoncini

    2016-12-01

    Full Text Available Sepsis is a serious health problem that is off worldwide interest; it is associated with a high mortality rate despite continuing improvements in infection management and the awareness of population is still poor despite its importance. Direct interventions to achieve the goal of clinician, like reduction of mortality, pass through the resuscitation and antibiotics but their effectiveness depends on the early recognition of symptoms and therefore the septic state. The nursing role is crucial both for the early recognition of the disease state, as well as to treat the patient with professionalism and promptness and to provide appropriate assistance to the kind of complexity that creates this pathological state: to achieve these aims, recommendations and bundles were developed to guide clinical nurses in septic patients’ care.

  2. Quantum Kolmogorov Complexity

    CERN Document Server

    Berthiaume, A; Laplante, S; Berthiaume, Andre; Dam, Wim van; Laplante, Sophie

    2000-01-01

    In this paper we give a definition for quantum Kolmogorov complexity. In the classical setting, the Kolmogorov complexity of a string is the length of the shortest program that can produce this string as its output. It is a measure of the amount of innate randomness (or information) contained in the string. We define the quantum Kolmogorov complexity of a qubit string as the length of the shortest quantum input to a universal quantum Turing machine that produces the initial qubit string with high fidelity. The definition of Vitanyi (Proceedings of the 15th IEEE Annual Conference on Computational Complexity, 2000) measures the amount of classical information, whereas we consider the amount of quantum information in a qubit string. We argue that our definition is natural and is an accurate representation of the amount of quantum information contained in a quantum state.

  3. Complexity for Artificial Substrates (

    NARCIS (Netherlands)

    Loke, L.H.L.; Jachowski, N.R.; Bouma, T.J.; Ladle, R.J.; Todd, P.A.

    2014-01-01

    Physical habitat complexity regulates the structure and function of biological communities, although the mechanisms underlying this relationship remain unclear. Urbanisation, pollution, unsustainable resource exploitation and climate change have resulted in the widespread simplification (and loss)

  4. On scattered subword complexity

    CERN Document Server

    Kása, Zoltán

    2011-01-01

    Special scattered subwords, in which the gaps are of length from a given set, are defined. The scattered subword complexity, which is the number of such scattered subwords, is computed for rainbow words.

  5. Complexity for Artificial Substrates (

    NARCIS (Netherlands)

    Loke, L.H.L.; Jachowski, N.R.; Bouma, T.J.; Ladle, R.J.; Todd, P.A.

    2014-01-01

    Physical habitat complexity regulates the structure and function of biological communities, although the mechanisms underlying this relationship remain unclear. Urbanisation, pollution, unsustainable resource exploitation and climate change have resulted in the widespread simplification (and loss) o

  6. Beyond complex Langevin equations

    CERN Document Server

    Wosiek, Jacek

    2016-01-01

    A simple integral relation between a complex weight and the corresponding positive distribution is derived by introducing a second complex variable. Together with the positivity and normalizability conditions, this sum rule allows to construct explicitly equivalent pairs of distributions in simple cases. In particular the well known solution for a complex gaussian distribution is generalized to an arbitrary complex slope. This opens a possibility of positive representation of Feynman path integrals directly in the Minkowski time. Such construction is then explicitly carried through in the second part of this presentation. The continuum limit of the new representation exists only if some of the additional couplings tend to infinity and are tuned in a specific way. The approach is then successfully applied to three quantum mechanical examples including a particle in a constant magnetic field -- a simplest prototype of a Wilson line. Further generalizations are shortly discussed and an amusing interpretation of ...

  7. Management recommendations: Tewaukon Complex

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a review of land management practices at the Tewaukon Complex, by a land use specialist. Recommendations, time frame and additional comments are...

  8. Complex coacervate core micelles.

    Science.gov (United States)

    Voets, Ilja K; de Keizer, Arie; Cohen Stuart, Martien A

    2009-01-01

    In this review we present an overview of the literature on the co-assembly of neutral-ionic block, graft, and random copolymers with oppositely charged species in aqueous solution. Oppositely charged species include synthetic (co)polymers of various architectures, biopolymers - such as proteins, enzymes and DNA - multivalent ions, metallic nanoparticles, low molecular weight surfactants, polyelectrolyte block copolymer micelles, metallo-supramolecular polymers, equilibrium polymers, etcetera. The resultant structures are termed complex coacervate core/polyion complex/block ionomer complex/interpolyelectrolyte complex micelles (or vesicles); i.e., in short C3Ms (or C3Vs) and PIC, BIC or IPEC micelles (and vesicles). Formation, structure, dynamics, properties, and function will be discussed. We focus on experimental work; theory and modelling will not be discussed. Recent developments in applications and micelles with heterogeneous coronas are emphasized.

  9. Complex Flow Workshop Report

    Energy Technology Data Exchange (ETDEWEB)

    none,

    2012-05-01

    This report documents findings from a workshop on the impacts of complex wind flows in and out of wind turbine environments, the research needs, and the challenges of meteorological and engineering modeling at regional, wind plant, and wind turbine scales.

  10. A complex legacy

    Science.gov (United States)

    Moore, Cristopher

    2011-11-01

    In his tragically short life, Alan Turing helped define what computing machines are capable of, and where they reach inherent limits. His legacy is still felt every day, in areas ranging from computational complexity theory to cryptography and quantum computing.

  11. DNA complexes: Durable binders

    Science.gov (United States)

    Urbach, Adam R.

    2011-11-01

    A tetra-intercalator compound that threads through a DNA double-helix to form a remarkably stable complex exhibits an unusual combination of sequence specificity and rapid association yet slow dissociation.

  12. Physical Sciences Complex

    Data.gov (United States)

    Federal Laboratory Consortium — This 88,000 square foot complex is used to investigate basic physical science in support of missile technology development. It incorporates office space, dedicated...

  13. Copper (II) Complex

    African Journals Online (AJOL)

    CLEMENT O BEWAJI

    Key Words : Histidine, complex compound, acetylacetone, stability constant, ... of a class of chemical compounds called amino acids, which are organic .... Synthesis and techniques in inorganic chemistry W. B. Saunders campany, 2nd Edition.

  14. Low complexity MIMO receivers

    CERN Document Server

    Bai, Lin; Yu, Quan

    2014-01-01

    Multiple-input multiple-output (MIMO) systems can increase the spectral efficiency in wireless communications. However, the interference becomes the major drawback that leads to high computational complexity at both transmitter and receiver. In particular, the complexity of MIMO receivers can be prohibitively high. As an efficient mathematical tool to devise low complexity approaches that mitigate the interference in MIMO systems, lattice reduction (LR) has been widely studied and employed over the last decade. The co-authors of this book are world's leading experts on MIMO receivers, and here they share the key findings of their research over years. They detail a range of key techniques for receiver design as multiple transmitted and received signals are available. The authors first introduce the principle of signal detection and the LR in mathematical aspects. They then move on to discuss the use of LR in low complexity MIMO receiver design with respect to different aspects, including uncoded MIMO detection...

  15. Complex Strategic Choices

    DEFF Research Database (Denmark)

    Leleur, Steen

    . Complex Strategic Choices provides clear principles and methods which can guide and support strategic decision making to face the many current challenges. By considering ways in which planning practices can be renewed and exploring the possibilities for acquiring awareness and tools to add value...... and students in the field of planning and decision analysis as well as practitioners dealing with strategic analysis and decision making. More broadly, Complex Strategic Choices acts as guide for professionals and students involved in complex planning tasks across several fields such as business...... to strategic decision making, Complex Strategic Choices presents a methodology which is further illustrated by a number of case studies and example applications. Dr. Techn. Steen Leleur has adapted previously established research based on feedback and input from various conferences, journals and students...

  16. Supporting complex search tasks

    DEFF Research Database (Denmark)

    Gäde, Maria; Hall, Mark; Huurdeman, Hugo;

    2015-01-01

    There is broad consensus in the field of IR that search is complex in many use cases and applications, both on the Web and in domain specific collections, and both professionally and in our daily life. Yet our understanding of complex search tasks, in comparison to simple look up tasks......, is fragmented at best. The workshop addressed the many open research questions: What are the obvious use cases and applications of complex search? What are essential features of work tasks and search tasks to take into account? And how do these evolve over time? With a multitude of information, varying from...... introductory to specialized, and from authoritative to speculative or opinionated, when to show what sources of information? How does the information seeking process evolve and what are relevant differences between different stages? With complex task and search process management, blending searching, browsing...

  17. Complex Regional Pain Syndrome

    Science.gov (United States)

    Complex regional pain syndrome (CRPS) is a chronic pain condition. It causes intense pain, usually in the arms, hands, legs, or feet. ... in skin temperature, color, or texture Intense burning pain Extreme skin sensitivity Swelling and stiffness in affected ...

  18. Physical Sciences Complex

    Data.gov (United States)

    Federal Laboratory Consortium — This 88,000 square foot complex is used to investigate basic physical science in support of missile technology development. It incorporates office space, dedicated...

  19. complexes containing isocyanide and

    African Journals Online (AJOL)

    MR. S. O. OWALUDE

    Synthesis of new ruthenium(II) complexes containing isocyanide and labile nitrile ligands. Owalude,* S. O. ... both compounds has distorted octahedral coordination geometry. Key words: Nitrile ... commercial product from Acros Organics. All.

  20. Complex and unpredictable Cardano

    Science.gov (United States)

    Ekert, Artur

    2008-08-01

    This purely recreational paper is about one of the most colorful characters of the Italian Renaissance, Girolamo Cardano, and the discovery of two basic ingredients of quantum theory, probability and complex numbers.

  1. Network Complexity of Foodwebs

    CERN Document Server

    Standish, Russell K

    2010-01-01

    In previous work, I have developed an information theoretic complexity measure of networks. When applied to several real world food webs, there is a distinct difference in complexity between the real food web, and randomised control networks obtained by shuffling the network links. One hypothesis is that this complexity surplus represents information captured by the evolutionary process that generated the network. In this paper, I test this idea by applying the same complexity measure to several well-known artificial life models that exhibit ecological networks: Tierra, EcoLab and Webworld. Contrary to what was found in real networks, the artificial life generated foodwebs had little information difference between itself and randomly shuffled versions.

  2. Microsolvation in molecular complexes

    Energy Technology Data Exchange (ETDEWEB)

    Pasquini, M; Schiccheri, N; Piani, G; Pietraperzia, G; Becucci, M; Castellucci, E [European Laboratory for Non-Linear Spectroscopy (LENS), Polo Scientifico e Tecnologico Universita di Firenze, Via Nello Carrara 1, 50019 Sesto Fiorentino (Italy)], E-mail: gianni.pietraperzia@unifi.it

    2008-11-15

    In this paper, we report the results of our study of the microsolvation process involving the anisole molecule. We are able to study bimolecular complexes of different compositions. Changing the second partner molecule bound to anisole, we observed complexes of different geometries, because of the large variety of interactions possible for the anisole. High-resolution electronic spectroscopy is the best tool to reveal the correct vibrationally (zero-point) averaged geometry of the complex. That is done by analysing the rovibronic structure of the electronic spectra, which are related to the equilibrium geometry of the complex as well as dynamical processes, both in the ground and in the excited state. The interpretation of the experimental results is supported by high-level quantum calculations.

  3. Complex variable HVPT

    Energy Technology Data Exchange (ETDEWEB)

    Killingbeck, John P [Mathematics Department, University of Hull, Hull HU6 7RX (United Kingdom); Grosjean, Alain [Laboratoire d' Astrophysique de l' Observatoire de Besancon (CNRS, UPRES-A 6091), 41 bis Avenue de l' Observatoire, BP 1615, 25010 Besancon Cedex (France); Jolicard, Georges [Laboratoire d' Astrophysique de l' Observatoire de Besancon (CNRS, UPRES-A 6091), 41 bis Avenue de l' Observatoire, BP 1615, 25010 Besancon Cedex (France)

    2004-08-13

    Complex variable hypervirial perturbation theory is applied to the case of oscillator and Coulomb potentials perturbed by a single term potential of the form Vx{sup n} or Vr{sup n}, respectively. The trial calculations reported show that this approach can produce accurate complex energies for resonant states via a simple and speedy calculation and can also be useful in studies of PT symmetry and tunnelling resonance effects. (addendum)

  4. Electrospun complexes - functionalised nanofibres

    Science.gov (United States)

    Meyer, T.; Wolf, M.; Dreyer, B.; Unruh, D.; Krüger, C.; Menze, M.; Sindelar, R.; Klingelhöfer, G.; Renz, F.

    2016-12-01

    Here we present a new approach of using iron-complexes in electro-spun fibres. We modify poly(methyl methacrylate) (PMMA) by replacing the methoxy group with Diaminopropane or Ethylenediamine. The complex is bound covalently via an imine-bridge or an amide. The resulting polymer can be used in the electrospinning process without any further modifications in method either as pure reagent or mixed with small amounts of not functionalised polymer resulting in fibres of different qualities (Fig. 1).

  5. Electrospun complexes - functionalised nanofibres

    Energy Technology Data Exchange (ETDEWEB)

    Meyer, T.; Wolf, M.; Dreyer, B.; Unruh, D.; Krüger, C.; Menze, M. [Leibniz University Hannover, Institute of Inorganic Chemistry (Germany); Sindelar, R. [University of Applied Science Hannover, Faculty II (Germany); Klingelhöfer, G. [Gutenberg-University, Institute of Inorganic and Analytic Chemistry (Germany); Renz, F., E-mail: renz@acd.uni-hannover.de [Leibniz University Hannover, Institute of Inorganic Chemistry (Germany)

    2016-12-15

    Here we present a new approach of using iron-complexes in electro-spun fibres. We modify poly(methyl methacrylate) (PMMA) by replacing the methoxy group with Diaminopropane or Ethylenediamine. The complex is bound covalently via an imine-bridge or an amide. The resulting polymer can be used in the electrospinning process without any further modifications in method either as pure reagent or mixed with small amounts of not functionalised polymer resulting in fibres of different qualities (Fig. 1).

  6. Complex/Symplectic Mirrors

    CERN Document Server

    Chuang, W; Tomasiello, A; Chuang, Wu-yen; Kachru, Shamit; Tomasiello, Alessandro

    2005-01-01

    We construct a class of symplectic non--Kaehler and complex non--Kaehler string theory vacua, extending and providing evidence for an earlier suggestion by Polchinski and Strominger. The class admits a mirror pairing by construction. Comparing hints from a variety of sources, including ten--dimensional supergravity and KK reduction on SU(3)--structure manifolds, suggests a picture in which string theory extends Reid's fantasy to connect classes of both complex non-Kaehler and symplectic non-Kaehler manifolds.

  7. Quantum Hamiltonian Complexity

    OpenAIRE

    2014-01-01

    Constraint satisfaction problems are a central pillar of modern computational complexity theory. This survey provides an introduction to the rapidly growing field of Quantum Hamiltonian Complexity, which includes the study of quantum constraint satisfaction problems. Over the past decade and a half, this field has witnessed fundamental breakthroughs, ranging from the establishment of a "Quantum Cook-Levin Theorem" to deep insights into the structure of 1D low-temperature quantum systems via s...

  8. Conversation, coupling and complexity

    DEFF Research Database (Denmark)

    Fusaroli, Riccardo; Abney, Drew; Bahrami, Bahador;

    We investigate the linguistic co-construction of interpersonal synergies. By applying a measure of coupling between complex systems to an experimentally elicited corpus of joint decision dialogues, we show that interlocutors’ linguistic behavior displays increasing signature of multi-scale coupling......, known as complexity matching, over the course of interaction. Furthermore, we show that stronger coupling corresponds with more effective interaction, as measured by collective task performance....

  9. Provability, complexity, grammars

    CERN Document Server

    Beklemishev, Lev; Vereshchagin, Nikolai

    1999-01-01

    The book contains English translations of three outstanding dissertations in mathematical logic and complexity theory. L. Beklemishev proves that all provability logics must belong to one of the four previously known classes. The dissertation of M. Pentus proves the Chomsky conjecture about the equivalence of two approaches to formal languages: the Chomsky hierarchy and the Lambek calculus. The dissertation of N. Vereshchagin describes a general framework for criteria of reversability in complexity theory.

  10. An erupted complex odontoma.

    Science.gov (United States)

    Tozoglu, Sinan; Yildirim, Umran; Buyukkurt, M Cemil

    2010-01-01

    Odontomas are benign tumors of odontogenic origin. The cause of the odontoma is unknown, but it is believed to be hereditary or due to a disturbance in tooth development triggered by trauma or infection. Odontomas may be either compound or complex. Although these tumors are seen frequently, erupted odontomas are rare. The purpose of this study is to present a rare case of complex odontoma that erupted into the oral cavity.

  11. Advances in network complexity

    CERN Document Server

    Dehmer, Matthias; Emmert-Streib, Frank

    2013-01-01

    A well-balanced overview of mathematical approaches to describe complex systems, ranging from chemical reactions to gene regulation networks, from ecological systems to examples from social sciences. Matthias Dehmer and Abbe Mowshowitz, a well-known pioneer in the field, co-edit this volume and are careful to include not only classical but also non-classical approaches so as to ensure topicality. Overall, a valuable addition to the literature and a must-have for anyone dealing with complex systems.

  12. MANAGEMENT OF SPORT COMPLEXES

    Directory of Open Access Journals (Sweden)

    Marian STAN

    2015-07-01

    Full Text Available The actuality of the investigated theme. Nowadays, human evolution, including his intellectual development, proves the fact that especially the creation manpower and the employment was the solution of all life’s ambitions in society. So, the fact is that in reality, man is the most important capital of the society. Also, in an individual’s life, the practice of sport plays a significant role and that’s why the initiation, the launch and the management of sports complexes activity reveal the existence of specific management features that we will identify and explain in the current study. The aim of the research refers to the elaboration of a theoretical base of the management of the sport complexes, to the pointing of the factors that influence the efficient existence and function of a sport complex in our country and to the determination of the responsibilities that have a manager who directs successfully the activity of the sport complexes. The investigation is based on theoretical methods, such as: scientific documentation, analysis, synthesis, comparison and on empirical research methods, like: study of researched literature and observation. The results of the research indicate the fact that the profitability of a sport complex must assure a particular structure to avoid the bankruptcy risk and also, that the administration of the sport complexes activity must keep in view the reliable functions of the contemporaneous management.

  13. From Complexity to Life - On The Emergence of Life and Meaning

    Science.gov (United States)

    Gregersen, Niels Henrik

    2002-11-01

    This book brings together an impressive group of leading scholars in the sciences of complexity, and a few workers on the interface of science and religion, to explore the wider implications of complexity studies. It includes an introduction to complexity studies and explores the concept of information in physics and biology and various philosophical and religious perspectives. Chapter authors include Paul Davies, Greg Chaitin, Charles Bennett, Werner Loewenstein, Paul Dembski, Ian Stewart, Stuart Kauffman, Harold Morowitz, Arthur Peacocke, and Niels H. Gregersen.

  14. Modelling Complexity in Musical Rhythm

    OpenAIRE

    Liou, Cheng-Yuan; Wu, Tai-Hei; Lee, Chia-Ying

    2007-01-01

    This paper constructs a tree structure for the music rhythm using the L-system. It models the structure as an automata and derives its complexity. It also solves the complexity for the L-system. This complexity can resolve the similarity between trees. This complexity serves as a measure of psychological complexity for rhythms. It resolves the music complexity of various compositions including the Mozart effect K488. Keyword: music perception, psychological complexity, rhythm, L-system, autom...

  15. eIF4F-like complexes formed by cap-binding homolog TbEIF4E5 with TbEIF4G1 or TbEIF4G2 are implicated in post-transcriptional regulation in Trypanosoma brucei.

    Science.gov (United States)

    Freire, Eden R; Vashisht, Ajay A; Malvezzi, Amaranta M; Zuberek, Joanna; Langousis, Gerasimos; Saada, Edwin A; Nascimento, Janaína De F; Stepinski, Janusz; Darzynkiewicz, Edward; Hill, Kent; De Melo Neto, Osvaldo P; Wohlschlegel, James A; Sturm, Nancy R; Campbell, David A

    2014-08-01

    Members of the eIF4E mRNA cap-binding family are involved in translation and the modulation of transcript availability in other systems as part of a three-component complex including eIF4G and eIF4A. The kinetoplastids possess four described eIF4E and five eIF4G homologs. We have identified two new eIF4E family proteins in Trypanosoma brucei, and define distinct complexes associated with the fifth member, TbEIF4E5. The cytosolic TbEIF4E5 protein binds cap 0 in vitro. TbEIF4E5 was found in association with two of the five TbEIF4Gs. TbIF4EG1 bound TbEIF4E5, a 47.5-kDa protein with two RNA-binding domains, and either the regulatory protein 14-3-3 II or a 117.5-kDa protein with guanylyltransferase and methyltransferase domains in a potentially dynamic interaction. The TbEIF4G2/TbEIF4E5 complex was associated with a 17.9-kDa hypothetical protein and both 14-3-3 variants I and II. Knockdown of TbEIF4E5 resulted in the loss of productive cell movement, as evidenced by the inability of the cells to remain in suspension in liquid culture and the loss of social motility on semisolid plating medium, as well as a minor reduction of translation. Cells appeared lethargic, as opposed to compromised in flagellar function per se. The minimal use of transcriptional control in kinetoplastids requires these organisms to implement downstream mechanisms to regulate gene expression, and the TbEIF4E5/TbEIF4G1/117.5-kDa complex in particular may be a key player in that process. We suggest that a pathway involved in cell motility is affected, directly or indirectly, by one of the TbEIF4E5 complexes. © 2014 Freire et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

  16. 东天山白石泉镁铁-超镁铁杂岩体的Nd-Sr-Os同位素成分及其对岩浆演化的意义%Nd-Sr-Os isotopic data of the Baishiquan mafic-ultramafic complex from East Tianshan, and implications for petrogenesis

    Institute of Scientific and Technical Information of China (English)

    陈斌; 贺敬博; 陈长健; 木合塔尔·扎日

    2013-01-01

    本文报道东天山有铜镍硫化物矿化的白石泉镁铁-超镁铁杂岩体(分布在中天山地块北部)的微量元素和Nd-Sr-Os同位素成分,以探讨其地幔源区性质和壳幔相互作用过程.白石泉杂岩体的地球化学特征是富集大离子亲石元素和轻稀土元素,但亏损高场强元素.全岩Sr和Nd同位素初始比值变化较大,分别是(87Sr/86Sr)i =0.7032~0.7066和εNd(t)=5.6~-0.9,两者呈反相关关系.全岩Os含量在80×10-12~29×10-12之间,富含放射性成因Os(187 Os/188 Os=0.295~ 1.18).据此,得出结论:(1)白石泉杂岩体的母岩浆在上升侵位过程中,受到地壳物质的强烈混染,导致各岩石类型的Nd-Sr同位素成分变化很大和Os同位素成分富集放射性成因Os的特征,这与前人认为的白石泉岩体侵位过程中没有地壳混染作用的模式明显不同;(2)白石泉杂岩体的母岩浆来自被古生代俯冲带熔/流体交代过的年轻岩石圈地幔,这要求我们重新认识中天山前寒武地块的性质和规模.%We report trace elements and Nd-Sr-Os isotopic data for the Baishiquan mafic-ultramafic complex that occurs in the East Tianshan Mountains (in the northern part of the Mid-Tianshan Precambrian block) and is accompanied by Cu-Ni deposits, to understand its mantle source characteristics and processes of mantle-crustal interaction. Geochemically, the complex is characterized by enrichment of LILEs and depletion of HFSEs. The whole-rock Sr-Nd isotopic compositions of the Baishiquan complex vary significantly, with (87Sr/ 86Sr)i =0. 7032 ~0. 7066 and εNd(t) =5. 6 ~ -0. 9, and the Nd-Sr isotopic ratios are negatively correlated. The complex shows very radiogenic Os isotopic compositions, with (187Os/188Os)i =0.295~1. 18 and Os=80 ×l0-12 ~29 ×l0-12. Based on these data, we conclude that (1) the parent magma of the Baishiquan complex experienced significant crustal contamination during magma emplacement, as is revealed by the negatively

  17. Turbulent complex (dusty) plasma

    Science.gov (United States)

    Zhdanov, Sergey; Schwabe, Mierk

    2017-04-01

    As a paradigm of complex system dynamics, solid particles immersed into a weakly ionized plasma, so called complex (dusty) plasmas, were (and continue to be) a subject of many detailed studies. Special types of dynamical activity have been registered, in particular, spontaneous pairing, entanglement and cooperative action of a great number of particles resulting in formation of vortices, self-propelling, tunneling, and turbulent movements. In the size domain of 1-10 mkm normally used in experiments with complex plasmas, the characteristic dynamic time-scale is of the order of 0.01-0.1 s, and these particles can be visualized individually in real time, providing an atomistic (kinetic) level of investigations. The low-R turbulent flow induced either by the instability in a complex plasma cloud or formed behind a projectile passing through the cloud is a typical scenario. Our simulations showed formation of a fully developed system of vortices and demonstrated that the velocity structure functions scale very close to the theoretical predictions. As an important element of self-organization, cooperative and turbulent particle motions are present in many physical, astrophysical, and biological systems. Therefore, experiments with turbulent wakes and turbulent complex plasma oscillations are a promising mean to observe and study in detail the anomalous transport on the level of individual particles.

  18. Complexity and Dynamical Depth

    Directory of Open Access Journals (Sweden)

    Terrence Deacon

    2014-07-01

    Full Text Available We argue that a critical difference distinguishing machines from organisms and computers from brains is not complexity in a structural sense, but a difference in dynamical organization that is not well accounted for by current complexity measures. We propose a measure of the complexity of a system that is largely orthogonal to computational, information theoretic, or thermodynamic conceptions of structural complexity. What we call a system’s dynamical depth is a separate dimension of system complexity that measures the degree to which it exhibits discrete levels of nonlinear dynamical organization in which successive levels are distinguished by local entropy reduction and constraint generation. A system with greater dynamical depth than another consists of a greater number of such nested dynamical levels. Thus, a mechanical or linear thermodynamic system has less dynamical depth than an inorganic self-organized system, which has less dynamical depth than a living system. Including an assessment of dynamical depth can provide a more precise and systematic account of the fundamental difference between inorganic systems (low dynamical depth and living systems (high dynamical depth, irrespective of the number of their parts and the causal relations between them.

  19. Complexity: The bigger picture

    CERN Document Server

    Vicsek, Tamás

    2010-01-01

    If a concept is not well defined, there are grounds for its abuse. This is particularly true of complexity, an inherently interdisciplinary concept that has penetrated very different fields of intellectual activity from physics to linguistics, but with no underlying, unified theory. Complexity has become a popular buzzword used in the hope of gaining attention or funding -- institutes and research networks associated with complex systems grow like mushrooms. Why and how did it happen that this vague notion has become a central motif in modern science? Is it only a fashion, a kind of sociological phenomenon, or is it a sign of a changing paradigm of our perception of the laws of nature and of the approaches required to understand them? Because virtually every real system is inherently extremely complicated, to say that a system is complex is almost an empty statement - couldn't an Institute of Complex Systems just as well be called an Institute for Almost Everything? Despite these valid concerns, the world is ...

  20. Algorithmic Relative Complexity

    Directory of Open Access Journals (Sweden)

    Daniele Cerra

    2011-04-01

    Full Text Available Information content and compression are tightly related concepts that can be addressed through both classical and algorithmic information theories, on the basis of Shannon entropy and Kolmogorov complexity, respectively. The definition of several entities in Kolmogorov’s framework relies upon ideas from classical information theory, and these two approaches share many common traits. In this work, we expand the relations between these two frameworks by introducing algorithmic cross-complexity and relative complexity, counterparts of the cross-entropy and relative entropy (or Kullback-Leibler divergence found in Shannon’s framework. We define the cross-complexity of an object x with respect to another object y as the amount of computational resources needed to specify x in terms of y, and the complexity of x related to y as the compression power which is lost when adopting such a description for x, compared to the shortest representation of x. Properties of analogous quantities in classical information theory hold for these new concepts. As these notions are incomputable, a suitable approximation based upon data compression is derived to enable the application to real data, yielding a divergence measure applicable to any pair of strings. Example applications are outlined, involving authorship attribution and satellite image classification, as well as a comparison to similar established techniques.