Long-term after-effects of fertilisation on restoration of calcareous grasslands

NARCIS (Netherlands)

Smits, N.A.C.; Bobbink, R.; Willems, J.H.

2008-01-01

Question: What are the long-term implications of former fertilisation for the ecological restoration of calcareous grasslands? Location: Gerendal, Limburg, The Netherlands. Methods: In 1970, ten permanent plots were established in just abandoned agricultural calcareous grassland under a regime of

Living (stained calcareous benthic foraminifera from recent sediments off Concepción, central-southern Chile (~36° S Foraminíferos bentónicos calcáreos vivos (teñidos en sedimentos recientes de Concepción, Chile centro-sur (~36° S

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RAÚL TAPIA

2008-09-01

Full Text Available This study examines onshore-offshore and vertical distribution of living (Rose Bengal stained benthic foraminifera (> 180 μm fraction from three sediment stations along a bathymetric transect off Concepción, Chile (station 18 = 88 m water depth, station 26 = 120 m, station 40 = 1,030 m, within and below the oxygen minimum zone. All cores were collected in austral winter. Calcareous foraminifera dominated the three stations. The species composition, living foraminifera density, and vertical distribution patterns within the sediment changed in accordance with bottom water dissolved oxygen concentration and food availability. Onshore-offshore pattern revealed overall highest living foraminiferal densities at shelf stations 18 and 26 where bottom water dissolved oxygen was lowest (~ 0.2 mL-1 and content in labile organic matter highest. Within the sediment, maximum relative abundances (50-60 % of living organisms were found in the 0-1 cm interval at the organic-rich and oxygen-poor shelf stations 18 and 26. In the well-oxygenated (2.7 mL-1 slope station 40, 70 % of living foraminifera were observed deeper than the first centimeter. The number of species and the contribution of the > 250 μm fraction to the total fauna larger than 180 μm increased offshore. Nonionella auris (d'Orbigny dominated at stations 18 and 26 while a more diverse foraminifera fauna was found at station 40. This study provides the first quantitative data on living benthic foraminifera in the area; seasonal and interannual changes are not addressed.Este estudio examina la distribución costa-océano y vertical de los foraminíferos bentónicos calcáreos (fracción > 180 im vivos (teñidos en tres estaciones a lo largo de un transecto batimétrico frente al área de Concepción, Chile (estación 18 = 88 m, estación 26 = 120 m, estación 40 = 1.030 m de profundidad, dentro y bajo la zona mínima de oxígeno. Todos los testigos de sedimento fueron recolectados durante el per

Influence of calcareous deposit on corrosion behavior of Q235 carbon steel with sulfate-reducing bacteria

Science.gov (United States)

Zhang, Jie; Li, Xiaolong; Wang, Jiangwei; Xu, Weichen; Duan, Jizhou; Chen, Shougang; Hou, Baorong

2017-12-01

Cathodic protection is a very effective method to protect metals, which can form calcareous deposits on metal surface. Research on the interrelationship between fouling organism and calcareous deposits is very important but very limited, especially sulfate-reducing bacteria (SRB). SRB is a kind of very important fouling organism that causes microbial corrosion of metals. A study of the influence of calcareous deposit on corrosion behavior of Q235 carbon steel in SRB-containing culture medium was carried out using electrochemical impedance spectroscopy (EIS), scanning electron microscopy (SEM) and surface spectroscopy (EDS). The calcareous deposit was formed with good crystallinity and smooth surface under the gradient current density of -30 μA cm-2 in natural seawater for 72 h. Our results can help elucidate the formation of calcareous deposits and reveal the interrelationship between SRB and calcareous deposits under cathodic protection. The results indicate that the corrosion tendency of carbon steel was obviously affected by Sulfate-reducing Bacteria (SRB) metabolic activity and the calcareous deposit formed on the surface of carbon steel under cathodic protection was favourable to reduce the corrosion rate. Calcareous deposits can promote bacterial adhesion before biofilm formation. The results revealed the interaction between biofouling and calcareous deposits, and the anti-corrosion ability was enhanced by a kind of inorganic and organic composite membranes formed by biofilm and calcareous deposits.

Combination of Small Molecule Microarray and Confocal Microscopy Techniques for Live Cell Staining Fluorescent Dye Discovery

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Attila Bokros

2013-08-01

Full Text Available Discovering new fluorochromes is significantly advanced by high-throughput screening (HTS methods. In the present study a combination of small molecule microarray (SMM prescreening and confocal laser scanning microscopy (CLSM was developed in order to discover novel cell staining fluorescent dyes. Compounds with high native fluorescence were selected from a 14,585-member library and further tested on living cells under the microscope. Eleven compartment-specific, cell-permeable (or plasma membrane-targeted fluorochromes were identified. Their cytotoxicity was tested and found that between 1–10 micromolar range, they were non-toxic even during long-term incubations.

CellTracker Green labelling vs. rose bengal staining: CTG wins by points in distinguishing living from dead anoxia-impacted copepods and nematodes

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M. Grego

2013-07-01

Full Text Available Hypoxia and anoxia have become a key threat to shallow coastal seas. Much is known about their impact on macrofauna, less on meiofauna. In an attempt to shed more light on the latter group, in particular from a process-oriented view, we experimentally induced short-term anoxia (1 week in the northern Adriatic Sea (Mediterranean and examined the two most abundant meiofauna taxa – harpacticoid copepods and nematodes. Both taxa also represent different ends of the tolerance spectrum, with copepods being the most sensitive and nematodes among the most tolerant. We compared two methods: CellTracker Green (CTG – new labelling approach for meiofauna – with the traditional rose bengal (RB staining method. CTG binds to active enzymes and therefore colours live organisms only. The two methods show considerable differences in the number of living and dead individuals of both meiofauna taxa. Generally, RB will stain dead but not yet decomposed copepods and nematodes equally as it does live ones. Specifically, RB significantly overestimated the number of living copepods in all sediment layers in anoxic samples, but not in any normoxic samples. In contrast, for nematodes, the methods did not show such a clear difference between anoxia and normoxia. RB overestimated the number of living nematodes in the top sediment layer of normoxic samples, which implies an overestimation of the overall live nematofauna. For monitoring and biodiversity studies, the RB method might be sufficient, but for more precise quantification of community degradation, especially after an oxygen depletion event, CTG labelling is a better tool. Moreover, it clearly highlights the surviving species within the copepod or nematode community. As already accepted for foraminiferal research, we demonstrate that the CTG labelling is also valid for other meiofauna groups.

Sperm viability assessment in marine invertebrates by fluorescent staining and spectrofluorimetry: A promising tool for assessing marine pollution impact.

Science.gov (United States)

Gallo, Alessandra; Boni, Raffaele; Tosti, Elisabetta

2018-01-01

The viability of spermatozoa is a crucial parameter to evaluate their quality that is an important issue in ecotoxicological studies. Here, a new method has been developed to rapidly determine the viability of spermatozoa in three marine invertebrates: the ascidian Ciona intestinalis, the sea urchin Paracentrotus lividus and the mollusc Mytilus galloprovincialis. This method employed the dual DNA fluorescent staining coupled with spectrofluorimetric analysis. The dual fluorescent staining used the SYBR-14 stained live spermatozoa and propidium iodide stained degenerated cells that had lost membrane integrity. Stain uptake was assessed by confocal microscopy and then the percentage of live and dead spermatozoa was quantified by spectrofluorimetric analysis. The microscopic examination revealed three populations of spermatozoa: living-SYBR-14 stained, dead-PI stained, and dying-doubly stained spermatozoa. The fluorescence emission peak values recorded in a spectrofluorimeter provide the portion of live and dead spermatozoa showing a significant negative correlation. The stain combination was further validated using known ratios of live and dead spermatozoa. The present study demonstrated that the dual DNA staining with SYBR-14 and propidium iodide was effective in assessing viability of spermatozoa in marine invertebrates and that spectrofluorimetric analysis can be successfully employed to evaluate the percentage of live and dead spermatozoa. The method develop herein is simple, accurate, rapid, sensitive, and cost-effective, so it could be a useful tool by which marine pollutants may be screened for spermiotoxicity. Copyright © 2017 Elsevier Inc. All rights reserved.

Calcar femorale grafting in the hemiarthroplasty of the hip for unstable inter trochanteric fractures.

Science.gov (United States)

Thakkar, Chandrashekar J; Thakkar, Savyasachi; Kathalgere, Rajshekhar T; Kumar, Malhar N

2015-01-01

The sliding screw-plate devices and cephalo-medullary nail devices have performed well in stable inter-trochanteric fractures in patients with reasonably good quality of bone. However, their suboptimal performance in comminuted fractures in the presence of osteoporotic bone has prompted many surgeons to consider bipolar hemiarthroplasty as the primary modality of management of comminuted inter-trochanteric fractures in elderly patients. However, long term stability of the hemiarthroplasty implant also may be compromised due to the presence of postero-medial bone loss at the area of the calcar. We have presented a simple and effective technique of calcar grafting by harvesting cortical bone strut from the neck of the fractured femur. A total of 34 patients with inter-trochanteric fractures of the femur were treated with calcar grafting. The mean age was 79.2 years. The graft was harvested from the calcar region of the head and neck fragment of the femur and wedged between the medial femoral cortex and medial edge of the prosthesis. The mean followup period was 54.5 months. In 32 of 34 (94%) patients in our series, the calcar graft healed well without dislodgement. There was graft resorption in two patients associated with subsidence of the implant and loosening. Calcar grafting using this technique provides stability to the implant in the presence of comminution and incorporates well in the majority of patients. Donor site morbidity of graft harvesting is also avoided.

Influence of Cements Containing Calcareous Fly Ash as a Main Component Properties of Fresh Cement Mixtures

Science.gov (United States)

Gołaszewski, Jacek; Kostrzanowska-Siedlarz, Aleksandra; Ponikiewski, Tomasz; Miera, Patrycja

2017-10-01

The main goal of presented research was to examine usability of cements containing calcareous fly ash (W) from technological point of view. In the paper the results of tests concerning the influence of CEM II and CEM IV cements containing fly ash (W) on rheological properties, air content, setting times and plastic shrinkage of mortars are presented and discussed. Moreover, compatibility of plasticizers with cements containing fly ash (W) was also studied. Additionally, setting time and hydration heat of cements containing calcareous fly ash (W) were determined. In a broader aspect, the research contributes to promulgation of the possibility of using calcareous fly ash (W) in cement and concrete technology, what greatly benefits the environment protection (utilization of waste fly ash). Calcareous fly ash can be used successfully as the main component of cement. Cements produced by blending with processed fly ash or cements produced by interginding are characterized by acceptable technological properties. In respect to CEM I cements, cements containing calcareous fly ash worsen workability, decrease air content, delay setting time of mixtures. Cements with calcareous fly ash show good compatibility with plasticizers.

Potential of endozoochorous seed dispersal by sheep in calcareous grasslands: correlations with seed traits.

NARCIS (Netherlands)

Kuiters, A.T.; Huiskes, H.P.J.

2010-01-01

Questions: What is the potential of sheep to serve as seed dispersers via ingestion and defecation in calcareous grasslands? Is the presence of viable seeds from dung correlated with specific seed traits? Location: Calcareous grasslands, South Limburg, the Netherlands/Belgium. Methods: Dung samples

Effluent and gamma-irradiated digested sludge additions on calcareous soils

International Nuclear Information System (INIS)

Lee-Rodriguez, V.

1978-01-01

The long-term use of sewage effluent and the use of gamma-irradiated treated digested sewage sludge (RDSS) were studied under field and greenhouse conditions, respectively. The purpose of this investigation was to: (1) study the effect of long and short-term application of secondary sewage effluent and RDSS, respectively, on the buildup of iron and phytotoxicity problems on calcareous soils; (2) study the potential phytotoxicity of RDSS and observe the micronutrient fertilizer value of RDSS through three successive plantings on calcareous soil; (3) evaluate RDSS as a source of iron in a soil known to be severely iron-deficient

Modified Field's staining--a rapid stain for Trichomonas vaginalis.

Science.gov (United States)

Afzan, M Yusuf; Sivanandam, S; Kumar, G Suresh

2010-10-01

Trichomonas vaginalis, a flagellate protozoan parasite commonly found in the human genitourinary tract, is transmitted primarily by sexual intercourse. Diagnosis is usually by in vitro culture method and staining with Giemsa stain. There are laboratories that use Gram stain as well. We compared the use of modified Field's (MF), Giemsa, and Gram stains on 2 axenic and xenic isolates of T. vaginalis, respectively. Three smears from every sediment of spun cultures of all 4 isolates were stained, respectively, with each of the stains. We showed that MF staining, apart from being a rapid stain (20 s), confers sharper staining contrast, which differentiates the nucleus and the cytoplasm of the organism when compared to Giemsa and Gram staining especially on parasites from spiked urine samples. The alternative staining procedure offers in a diagnostic setting a rapid stain that can easily visualize the parasite with sharp contrasting characteristics between organelles especially the nucleus and cytoplasm. Vacuoles are more clearly visible in parasites stained with MF than when stained with Giemsa. Copyright © 2010 Elsevier Inc. All rights reserved.

Differential staining of bacteria: gram stain.

Science.gov (United States)

Moyes, Rita B; Reynolds, Jackie; Breakwell, Donald P

2009-11-01

In 1884, Hans Christian Gram, a Danish doctor, developed a differential staining technique that is still the cornerstone of bacterial identification and taxonomic division. This multistep, sequential staining protocol separates bacteria into four groups based on cell morphology and cell wall structure: Gram-positive cocci, Gram-negative cocci, Gram-positive rods, and Gram-negative rods. The Gram stain is useful for assessing bacterial contamination of tissue culture samples or for examining the Gram stain status and morphological features of bacteria isolated from mixed or isolated bacterial cultures. (c) 2009 by John Wiley & Sons, Inc.

TL studies of calcareous rocks of Danta area, North Gujarat

International Nuclear Information System (INIS)

Limaye, M.A.; Desai, S.J.; Murthy, K.V.R.; Joshi, T.R.

1992-01-01

The lithounits exposed around Danta in Banaskantha district of North Gujarat belong to Ajabgarh Group, the upper division of the Delhi super group. These rocks are intruded by syn to late kinematic basic rocks and by Erinpura granites of post Delhi age. The Ajabgarh group consists of pelitic and calcareous components. Mineralogically the pelitic rocks comprise cordierite, almandine garnet, k-feldspar, sillimanite, quartz and mica in variable proportions. The calcareous rocks are seen to contain dominantly calcite, scapolite, forsterite, sphene, k-feldspar. These mineral assemblages correspond to upper Amphibolite to lower Granulite facies of regional metamorphism. The chemistry of the calcareous rocks show predominance of CaO over MgO. The glow curves obtained from virgin samples (NTL) as well as artificial beta irradiated indicate glow peaks at 140 o C, 290 o C, 310 o C and 390 o C. The TL glow peak temperatures are in general agreement with those reported by Borsi and Rinaldi and Medlin. The pronounced peak at 390 o C and 290 o C are suggestive of their high irradiation sensitivity and also probably reflect variation in the Mn content of the rocks. (author). 9 refs., 16 tabs., 2 figs

Calcareous nannofossil events in the pre-evaporitic Messinian

Science.gov (United States)

Negri, Alessandra; Lozar, Francesca

2017-04-01

During the Messinian (7.2 to 5.3 Ma) the Mediterranean area experienced fast and deep climatic and eustatic structural changes. The stratigraphic framework for this interval is relatively well constrained and the beginning of the Messinian salinity crisis dated at 5.97 Ma determine a duration of at least 1.2 Ma for the pre-evaporitic Messinian that is object of this study. Several sites (Faneromeni, Pissouri, Polemi Fanantello borehole, Lemme, Pollenzo, Govone, Moncalvo; Wade and Bown, 2006; Kouwenhoven et al 2006, Morigi et al 2007, Lozar et al 2010, Dela Pierre et al 2011) show similar calcareous nannofossil record behavior, with several Sphenolithus spp. peaks recognised at different quotes in each of the sections. Aim of the present work is to compare the calcareous nannofossil data achieved in the above mentioned sections: interestingly, the occurrence of strongly oligotypic assemblages related to high salinity and unstable environments, appear to correlate precisely among the investigated sites and occur immediately before the onset of the Messinian salinity crisis, then offering the possibility to use them as bioevents for regional correlation. References Dela Pierre, F., Bernardi, E., Cavagna, S., Clari, P., Gennari, R., Irace, A., Lozar, F., Lugli, S., Manzi, V., Natalicchio, M., Roveri, M., Violanti, D., 2011. The record of the Messinian salinity crisis in the Tertiary Piedmont Basin (NW Italy): The Alba section revisited. Palaeogeography, Palaeoclimatology, Palaeoecology 310, 238-255. Kouwenhoven, T.J., Morigi, C., Negri, A., Giunta, S., Krijgsman, W., Rouchy, J.M., 2006 Paleoenvironmental evolution of the eastern Mediterranean during the Messinian: Constraints from integrated microfossil data of the Pissouri Basin (Cyprus). Marine Micropaleontology 60, 17-44. Lozar, F., Violanti, D., Dela Pierre, F., Bernardi, E., Cavagna, S., Clari, P., Irace, A., Martinetto, E., Trenkwalder, S., 2010. Calcareous nannofossils and foraminifers herald the Messinian

Biostratigraphic and morphometric analyses of specimens from the calcareous nannofossil genus Tribrachiatus

Science.gov (United States)

Self-Trail, Jean; Seefelt, Ellen L.; Shepherd, Claire L.; Martin, Victoria A.

2017-01-01

Biostratigraphic and morphometric analyses of calcareous nannofossil assemblages from one outcrop and two cored sections of lower Eocene sediments reveal the presence of two new species: Tribrachiatus lunatus sp. nov., and Tribrachiatus absidatus sp. nov. Differences between the new species and Tribrachiatus orthostylus are discussed. The first occurrence of the two new species is just below the calcareous nannofossil Zone NP11/NP12 boundary, close to the Chron 24r/23n boundary, and thus they are globally useful biostratigraphic markers.

Contrasting effects of ocean acidification on tropical fleshy and calcareous algae.

Science.gov (United States)

Johnson, Maggie Dorothy; Price, Nichole N; Smith, Jennifer E

2014-01-01

Despite the heightened awareness of ocean acidification (OA) effects on marine organisms, few studies empirically juxtapose biological responses to CO2 manipulations across functionally distinct primary producers, particularly benthic algae. Algal responses to OA may vary because increasing CO2 has the potential to fertilize photosynthesis but impair biomineralization. Using a series of repeated experiments on Palmyra Atoll, simulated OA effects were tested across a suite of ecologically important coral reef algae, including five fleshy and six calcareous species. Growth, calcification and photophysiology were measured for each species independently and metrics were combined from each experiment using a meta-analysis to examine overall trends across functional groups categorized as fleshy, upright calcareous, and crustose coralline algae (CCA). The magnitude of the effect of OA on algal growth response varied by species, but the direction was consistent within functional groups. Exposure to OA conditions generally enhanced growth in fleshy macroalgae, reduced net calcification in upright calcareous algae, and caused net dissolution in CCA. Additionally, three of the five fleshy seaweeds tested became reproductive upon exposure to OA conditions. There was no consistent effect of OA on algal photophysiology. Our study provides experimental evidence to support the hypothesis that OA will reduce the ability of calcareous algae to biomineralize. Further, we show that CO2 enrichment either will stimulate population or somatic growth in some species of fleshy macroalgae. Thus, our results suggest that projected OA conditions may favor non-calcifying algae and influence the relative dominance of fleshy macroalgae on reefs, perpetuating or exacerbating existing shifts in reef community structure.

Contrasting effects of ocean acidification on tropical fleshy and calcareous algae

Directory of Open Access Journals (Sweden)

Maggie Dorothy Johnson

2014-05-01

Full Text Available Despite the heightened awareness of ocean acidification (OA effects on marine organisms, few studies empirically juxtapose biological responses to CO2 manipulations across functionally distinct primary producers, particularly benthic algae. Algal responses to OA may vary because increasing CO2 has the potential to fertilize photosynthesis but impair biomineralization. Using a series of repeated experiments on Palmyra Atoll, simulated OA effects were tested across a suite of ecologically important coral reef algae, including five fleshy and six calcareous species. Growth, calcification and photophysiology were measured for each species independently and metrics were combined from each experiment using a meta-analysis to examine overall trends across functional groups categorized as fleshy, upright calcareous, and crustose coralline algae (CCA. The magnitude of the effect of OA on algal growth response varied by species, but the direction was consistent within functional groups. Exposure to OA conditions generally enhanced growth in fleshy macroalgae, reduced net calcification in upright calcareous algae, and caused net dissolution in CCA. Additionally, three of the five fleshy seaweeds tested became reproductive upon exposure to OA conditions. There was no consistent effect of OA on algal photophysiology. Our study provides experimental evidence to support the hypothesis that OA will reduce the ability of calcareous algae to biomineralize. Further, we show that CO2 enrichment either will stimulate population or somatic growth in some species of fleshy macroalgae. Thus, our results suggest that projected OA conditions may favor non-calcifying algae and influence the relative dominance of fleshy macroalgae on reefs, perpetuating or exacerbating existing shifts in reef community structure.

Dynamic shear stiffness and damping ratio of marine calcareous and siliceous sands

Science.gov (United States)

Javdanian, Hamed; Jafarian, Yaser

2018-03-01

Shear stiffness and damping ratio of two marine calcareous and siliceous sands were evaluated through an experimental program. Resonant column and cyclic triaxial experiments were conducted to measure the dynamic properties of the sands in small and large shear strain amplitudes. The tests were conducted under various initial stress-density conditions. The influence of effective confining pressure on the dynamic properties of the sands was assessed and compared in a preceding paper. It was shown that the calcareous sand has higher shear stiffness and lower damping ratio in comparison to the siliceous sand. In this note, the results are presented in more details and the dynamic behavior curves of the studied sands are compared with some available models, mostly developed based on the laboratory data of siliceous sands. This comparative study reveals that the previous models predict the dynamic properties of the calcareous sand in less precision than those of the siliceous sand.

A blue fluorescent labeling technique utilizing micro- and nanoparticles for tracking in LIVE/DEAD® stained pathogenic biofilms of Staphylococcus aureus and Burkholderia cepacia

Directory of Open Access Journals (Sweden)

Klinger-Strobel M

2016-02-01

Full Text Available Mareike Klinger-Strobel,1,2,* Julia Ernst,3,* Christian Lautenschläger,4 Mathias W Pletz,1,2 Dagmar Fischer,3,5 Oliwia Makarewicz1,2 1Center for Infectious Diseases and Infection’s Control, 2Center for Sepsis Control and Care, Jena University Hospital, 3Department of Pharmaceutical Technology, Friedrich Schiller University Jena, 4Department of Internal Medicine IV, Jena University Hospital, 5Jena Center for Soft Matter (JCSM, Friedrich Schiller University Jena, Jena, Germany*These authors contributed equally to this work Abstract: Strategies that target and treat biofilms are widely applied to bacterial cultures using popular live/dead staining techniques with mostly red or green fluorescent markers (eg, with SYTO® 9, propidium iodide, fluorescein. Therefore, visualizing drugs or micro- and nanoparticulate delivery systems to analyze their distribution and effects in biofilms requires a third fluorescent dye that does not interfere with the properties of the live/dead markers. The present study establishes and evaluates a model for tracking polymeric particles in fluorescently stained biological material. To this end, poly(D,L-lactide-co-glycolide (PLGA-based micro- and nanoparticles were used as well-established model systems, which, because of their favorable safety profiles, are expected to play important future roles with regard to drug delivery via inhalation. PLGA was covalently and stably labeled with 7-amino-4-methyl-3-coumarinylacetic acid (AMCA, after which blue fluorescent poly(ethylene glycol-block-PLGA (PEG-PLGA particles were prepared using a mixture of fluorescent AMCA-PLGA and PEG-PLGA. Because chitosan is known to reduce negative surface charge, blue fluorescent PEG-PLGA-particles with chitosan were also prepared. These micro- and nanoparticles were physicochemically characterized and could be clearly distinguished from live/dead stained bacteria in biofilms using confocal laser scanning microscopy. Keywords: 7-amino-4

Flow cytometric readout based on Mitotracker Red CMXRos staining of live asexual blood stage malarial parasites reliably assesses antibody dependent cellular inhibition

DEFF Research Database (Denmark)

Jogdand, Prajakta S; Singh, Susheel K; Christiansen, Michael

2012-01-01

asynchronous and tightly synchronized asexual blood stage cultures of Plasmodium falciparum were stained with CMXRos and subjected to detection by flow cytometry and fluorescence microscopy. The parasite counts obtained by flow cytometry were compared to standard microscopic counts obtained through examination......ABSTRACT: BACKGROUND: Functional in vitro assays could provide insights into the efficacy of malaria vaccine candidates. For estimating the anti-parasite effect induced by a vaccine candidate, an accurate determination of live parasite count is an essential component of most in vitro bioassays....... Although traditionally parasites are counted microscopically, a faster, more accurate and less subjective method for counting parasites is desirable. In this study mitochondrial dye (Mitotracker Red CMXRos) was used for obtaining reliable live parasite counts through flow cytometry. METHODS: Both...

INFLUENCE OF SILICEOUS AND CALCAREOUS FLY-ASHES ON PROPERTIES OF CEMENT MORTARS

Directory of Open Access Journals (Sweden)

Gabriela Monika Rutkowska

2016-09-01

Full Text Available Care of the environment in accordance with the principles of sustainable development introduces the possibility and need for waste recycling. Construction and building industries have the greatest potential for reuse of waste. The article presents the results of investigations of cement mortars – tests of compressive and tensile strength after 28 and 56 days of curing – for normative mortars and mortars containing fly ashes – calcareous and siliceous ash – in their composition. To make the samples, the Portland cement CEM I 32,5 R, 42,5R and natural aggregate with graining of 0–2 mm were used. Concrete with siliceous and calcareous admixtures was made in six lots where the ash was added in the quantity of 2%, 5%, 10% of the cement mass or the 2%, 5%, 10% of cement was replaced by ashes. After the tests, it was stated that the siliceous fly-ash admixture increases the compressive and bending strength in comparison to the mortars with the calcareous ash admixtures.

The development of fluorescence turn-on probe for Al(III) sensing and live cell nucleus-nucleoli staining

Science.gov (United States)

Saini, Anoop Kumar; Sharma, Vinay; Mathur, Pradeep; Shaikh, Mobin M.

2016-10-01

The morphology of nucleus and nucleolus is powerful indicator of physiological and pathological conditions. The specific staining of nucleolus recently gained much attention due to the limited and expensive availability of the only existing stain “SYTO RNA-Select”. Here, a new multifunctional salen type ligand (L1) and its Al3+ complex (1) are designed and synthesized. L1 acts as a chemosensor for Al3+ whereas 1 demonstrates specific staining of nucleus as well as nucleoli. The binding of 1 with nucleic acid is probed by DNase and RNase digestion in stained cells. 1 shows an excellent photostability, which is a limitation for existing nucleus stains during long term observations. 1 is assumed to be a potential candidate as an alternative to expensive commercial dyes for nucleus and nucleoli staining.

The potential of willow for remediation of heavy metal polluted calcareous urban soils

International Nuclear Information System (INIS)

Jensen, Julie K.; Holm, Peter E.; Nejrup, Jens; Larsen, Morten B.; Borggaard, Ole K.

2009-01-01

Growth performance and heavy metal uptake by willow (Salix viminalis) from strongly and moderately polluted calcareous soils were investigated in field and growth chamber trials to assess the suitability of willow for phytoremediation. Field uptakes were 2-10 times higher than growth chamber uptakes. Despite high concentrations of cadmium (≥80 mg/kg) and zinc (≥3000 mg/kg) in leaves of willow grown on strongly polluted soil with up to 18 mg Cd/kg, 1400 mg Cu/kg, 500 mg Pb/kg and 3300 mg Zn/kg, it is unsuited on strongly polluted soils because of poor growth. However, willow proved promising on moderately polluted soils (2.5 mg Cd/kg and 400 mg Zn/kg), where it extracted 0.13% of total Cd and 0.29% of the total Zn per year probably representing the most mobile fraction. Cu and Pb are strongly fixed in calcareous soils. - Willow is suited for remediation of moderately heavy metal polluted calcareous soils

Fate and Distribution of Heavy Metals in Wastewater Irrigated Calcareous Soils

Science.gov (United States)

Stietiya, Mohammed Hashem; Duqqah, Mohammad; Udeigwe, Theophilus; Zubi, Ruba; Ammari, Tarek

2014-01-01

Accumulation of heavy metals in Jordanian soils irrigated with treated wastewater threatens agricultural sustainability. This study was carried out to investigate the environmental fate of Zn, Ni, and Cd in calcareous soils irrigated with treated wastewater and to elucidate the impact of hydrous ferric oxide (HFO) amendment on metal redistribution among soil fractions. Results showed that sorption capacity for Zarqa River (ZR1) soil was higher than Wadi Dhuleil (WD1) soil for all metals. The order of sorption affinity for WD1 was in the decreasing order of Ni > Zn > Cd, consistent with electrostatic attraction and indication of weak association with soil constituents. Following metal addition, Zn and Ni were distributed among the carbonate and Fe/Mn oxide fractions, while Cd was distributed among the exchangeable and carbonate fractions in both soils. Amending soils with 3% HFO did not increase the concentration of metals associated with the Fe/Mn oxide fraction or impact metal redistribution. The study suggests that carbonates control the mobility and bioavailability of Zn, Ni, and Cd in these calcareous soils, even in presence of a strong adsorbent such as HFO. Thus, it can be inferred that in situ heavy metal remediation of these highly calcareous soils using iron oxide compounds could be ineffective. PMID:24723833

Fate and Distribution of Heavy Metals in Wastewater Irrigated Calcareous Soils

Directory of Open Access Journals (Sweden)

Mohammed Hashem Stietiya

2014-01-01

Full Text Available Accumulation of heavy metals in Jordanian soils irrigated with treated wastewater threatens agricultural sustainability. This study was carried out to investigate the environmental fate of Zn, Ni, and Cd in calcareous soils irrigated with treated wastewater and to elucidate the impact of hydrous ferric oxide (HFO amendment on metal redistribution among soil fractions. Results showed that sorption capacity for Zarqa River (ZR1 soil was higher than Wadi Dhuleil (WD1 soil for all metals. The order of sorption affinity for WD1 was in the decreasing order of Ni > Zn > Cd, consistent with electrostatic attraction and indication of weak association with soil constituents. Following metal addition, Zn and Ni were distributed among the carbonate and Fe/Mn oxide fractions, while Cd was distributed among the exchangeable and carbonate fractions in both soils. Amending soils with 3% HFO did not increase the concentration of metals associated with the Fe/Mn oxide fraction or impact metal redistribution. The study suggests that carbonates control the mobility and bioavailability of Zn, Ni, and Cd in these calcareous soils, even in presence of a strong adsorbent such as HFO. Thus, it can be inferred that in situ heavy metal remediation of these highly calcareous soils using iron oxide compounds could be ineffective.

leaves extracts as counter stain in gram staining reaction 56

African Journals Online (AJOL)

DR. AMINU

is a stain with color contrasting to the principal stain, making the stained ... technology today, the Gram's staining method remains ... was aimed at employing the use of Henna leaves extract as ... fragrant, white or rose flowers in clusters. It is.

Selenium Incorporated Cationic Organochalcogen: Live Cell Compatible and Highly Photostable Molecular Stain for Imaging and Localization of Intracellular DNA.

Science.gov (United States)

Gaur, Pankaj; Kumar, Ajay; Dey, Gourab; Kumar, Rajendra; Bhattacharyya, Shalmoli; Ghosh, Subrata

2016-05-04

Successful integration of selenium unit into a newly designed cationic chemical architecture led to the development of a highly photostable molecular maker PA5 to be used in fluorescence microscopy as cellular nucleus staining agent for longer duration imaging under continuous laser illumination. Adaptation of a targeted single-atom modification strategy led to the development of a series of proficient DNA light-up probes (PA1-PA5). Further, their comparative photophysical studies in the presence of DNA revealed the potential of electron rich heteroatoms of chalcogen family in improving binding efficiency and specificity of molecular probes toward DNA. The findings of cell studies confirmed the outstanding cell compatibility of probe PA5 in terms of cell permeability, biostability, and extremely low cytotoxicity. Moreover, the photostability experiment employing continuous laser illumination in solution phase as well as in cell assay (both fixed and live cells) revealed the admirable photobleaching resistance of PA5. Finally, while investigating the phototoxicity of PA5, the probe was found not to exhibit light-induced toxicity even when irradiated for longer duration. All these experimental results demonstrated the promising standing of PA5 as a futuristic cell compatible potential stain for bioimaging and temporal profiling of DNA.

Endogenous and bioaugmented sulphate reduction in calcareous gypsiferous soils

NARCIS (Netherlands)

Alfaya, F.; Cuenca-Sanchez, M.; Garcia-Orenes, F.; Lens, P.N.L.

2009-01-01

Gypsiferous soils have a high agricultural value, but their utilization is limited by the presence of gypsum that can induce hardpan and vertical crusting. This paper reports on sulphate reduction in this soil type as a basis of a bioremediation technology to remove the gypsum content of calcareous

EFFECT OF SILICATE ON GRAM STAINING AND VIABILITY OF PNEUMOCOCCI AND OTHER BACTERIA

Science.gov (United States)

MacLeod, Colin M.; Roe, Amy S.

1956-01-01

Application of silicate solutions to living or heat-killed pneumococci and to certain "viridans" streptococci causes their conversion from a Gram-positive to a Gram-negative state. The original staining properties can be restored by suspending the silicate-treated bacteria in alkaline solutions of various salts but not by simple washing in water. Living pneumococci and the strains of streptococci whose staining properties are similarly affected are killed when suspended in silicate solutions. In other Gram-positive species silicate causes conversion to Gram negativity but restoration to positivity occurs upon washing in water. In a third group of Gram-positive organisms silicate has no effect on the Gram reaction. The viability of organisms in these two groups is unaffected by silicate under the conditions employed. No effect on staining or viability of Gram-negative bacteria has been observed. The effects of silicate on staining and viability are inhibited by nutrient broth or whole serum but not by purified serum albumin. Lecithin, choline, and other substituted ammonium compounds also inhibit the effects of silicate on pneumococci. PMID:13306854

A Study of Calcareous Deposits on Cathodically Protected Mild Steel in Artificial Seawater

Directory of Open Access Journals (Sweden)

Yuanfeng Yang

2015-03-01

Full Text Available Calcareous deposits were formed on steel under conditions of cathodic protection in artificial seawater at applied constant current densities ranging from 50 to 400 mA·m−2. The calcareous layers were characterized using a Field Emission Gun Scanning Electron Microscope (FEG SEM in conjunction with Energy Dispersive X-Ray Analysis (EDX, and Electrochemical Impedance Spectroscopy (EIS. At cathodic current densities of 50–100 mA·m−2 where corrosion was still occurring, a clear correlation existed between the iron containing corrosion product and the overlying magnesium hydroxide layer. This revealed that the mapping of magnesium rich areas on a steel surface can be used in the identification of local corrosion sites. At current densities of 150–200 mA·m−2, a layered deposit was shown to occur consisting of an inner magnesium-containing layer and an outer calcium-containing layer. At current densities of 300–400 mA·m−2, intense hydrogen bubbling through macroscopic pores in the deposits gave rise to cracking of the deposited film. Under such conditions deposits do not have a well-defined double layer structure. There is also preferential formation of magnesium-rich compounds near the steel surface at the early stages of polarisation and within the developing pores and cracks of calcareous deposits later on. Based on SEM/EDX investigation of calcareous depositions the impedance model was proposed and used to monitor in situ variations in steel corrosion resistance, and to calculate the thickness of formed deposits using the length of oxygen diffusion paths.

Port-Wine Stains

Science.gov (United States)

... Safe Videos for Educators Search English Español Port-Wine Stains KidsHealth / For Parents / Port-Wine Stains What's ... Manchas de vino de oporto What Are Port-Wine Stains? A port-wine stain is a type ...

Community structure and palaeoecological implications of calcareous encrusters on artificial substrates across a Mexican Caribbean reef

Science.gov (United States)

Hepburn, L. J.; Blanchon, P.; Murphy, G.; Cousins, L.; Perry, C. T.

2015-03-01

Calcareous encrusters stabilize and bind reef framework and contribute significantly to reef function and biodiversity. Their calcareous skeletons have good preservation potential which, together with well-constrained habitat preferences, makes them useful indicators of past environmental conditions. However, our knowledge of environmental tolerances and spatial distribution trends of encrusters remains limited. Here, we determine the distributional trends and environmental tolerances of calcareous encrusters and delineate the relevance of particular species/genera for palaeoecological reconstructions. Artificial microhabitats were created to mimic exposed, partially cryptic, and cryptic habitats in various orientations for periods of 1 and 2 yr. Calcareous encruster coverage was high, especially in cryptic habitats (95 %), and clear successional trends were observed over time. Total encruster carbonate production was intermediate (range 72.8-476.3 g m-2 yr-1). Encruster species and growth morphology exhibited a defined zonation in response to reef sub-environment, microhabitat, and environmental factors such as light and wave exposure. Linear regression identified three coralline algae genera, as well as Homotrema rubrum, Planorbulina spp., and cemented bivalves as those most likely to occur in particular habitats. Therefore, the presence of these species may be used with greater confidence in distinguishing palaeomicroenvironments.

Biosuper as a phosphate fertilizer in a calcareous soil with low ...

African Journals Online (AJOL)

SERVER

2007-06-04

Jun 4, 2007 ... Key words: Zea mays, phosphorus uptake, phosphorus fertilization, corn, Thiobacillus, rock phosphate. ... improve plant nutrients availability in calcareous soils and .... lus elicits the reaction of sulphur with water and oxygen, ...

Use of calcareous algae and monensin in Nellore cattle subjected to an abrupt change in diet

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Roberta Ferreira Carvalho

2016-04-01

Full Text Available ABSTRACT: Additives are used in high concentrate diets to prevent metabolic disorders in cattle. This study was designed to evaluate the effect of calcium sources and monensin on the control of ruminal acidosis in Nellore cattle that were abruptly shifted to a high (92.3% concentrate diet. Eight cannulated steers were randomly assigned to two contemporary 4x4 Latin square. Treatments involved the addition of a calcium source, either limestone (LI or a product derived from calcareous algae (CA, to the basic diet with or without the presence of monensin. Calcareous alga (Lithothamnium calcareum is a natural and renewable product and a source of calcium carbonate. The quantity of added limestone, calcareous algae and monensin was 7.1g kg-1, 7.4g kg-1 and 30mg kg-1 DM, respectively. There was no effect of calcium source (P=0.607 or monensin (P=0.294 on feed intake or on the concentration of short chain fatty acids. Treatments with calcareous algae resulted in a higher mean ruminal pH (P=0.039, a shorter amount of time with the ruminal pH under 5.2 (P<0.001 and a better control of blood pH (P=0.006. Treatments with monensin also resulted in a shorter amount of time with the ruminal pH below 5.2 (P=0.023. Calcareous algae were shown to be effective in controlling adverse changes in the rumen and in blood variables for Nellore cattle that were subjected to an abrupt change to a high concentrate diet.

Specialist plant species harbour higher reproductive performances in recently restored calcareous grasslands than in reference habitats

OpenAIRE

Harzé, Mélanie; Mahy, Grégory; Bizoux, Jean-Philippe; Piqueray, Julien; Monty, Arnaud

2015-01-01

Background and aims_Calcareous grasslands are local biodiversity hotspots in temperate regions that suffered intensive fragmentation. Ecological restoration projects took place all over Europe. Their success has traditionally been assessed using a plant community approach. However, population ecology can also be useful to assess restoration success and to understand underlying mechanisms. Methods_We took advantage of three calcareous grassland sites in Southern Belgium, where reference p...

Laser Treatment of Port Wine Stains

Science.gov (United States)

Majaron, Boris; Nelson, J. Stuart

Port wine stain (PWS), also called nevus flammeus, is a congenital, cutaneous vascular malformation involving post-capillary venules which produce a light pink to red to dark-red-violet discoloration of human skin [1]. PWS occurs in an estimated 3 children per 1000 live births, affecting males and females and all racial groups equally [2]. There appears to be no hereditary predilection for PWS within families. There are no known risk factors or ways to prevent PWS.

Were Oceanic Plateaus Instrumental for Calcareous Nannoplankton Evolution?

Science.gov (United States)

Erba, E.; Casellato, C.; Bottini, C.

2011-12-01

The history of calcareous nannoplankton shows a general increase in species richness through the Mesozoic. Fertility and chemistry of the oceans, climate and pCO2 seem instrumental for nannoplankton abundance, diversification and adaptation, but high-resolution chronology of paleobiological and geological events is crucial for the understanding of evolutionary processes relative to ecosystem perturbations. Natural variations in atmospheric CO2 are essentially triggered by igneous activity and the role of ocean crust production in the evolution of seawater composition, nutrient cycling, climate change and, consequently, in calcareous nannoplankton biodiversity, might be more relevant than generally thought. Indeed, two major steps in nannofloral Mesozoic evolution correlate with construction of gigantic oceanic plateaus, namely the Shatsky Rise (SR) (Tithonian/Berriasian boundary interval) and the Ontong Java Plateau (OJP) (Barremian/Aptian boundary interval). During the latest Jurassic calcareous nannoplankton experienced a rapid diversification and rise in abundance of several taxa including heavily calcified nannoliths with consequent major increase in biogenic calcite production. The Tithonian origination of coccoliths and nannoliths suggests ideal paleoecological conditions for calcareous nannoplankton, presumably thriving in stable, relatively oligotrophic and cool oceans under low pCO2. Recent data indicate that this speciation and calcification episode was interrupted during magnetochron CM19r, prior to massive diversification of nannoconids. In the late Barremian-early Aptian interval, the nannoconid decline and crisis are paralleled by a major nannoplankton (mainly coccolith) speciation episode. Such calcification failure and coccolith diversification might reflect disruption of the thermocline, increased fertility and warming under excess CO2 levels. These evolutionary steps show rapid speciation, but differ because nannoliths became dominant in the late

Experimental assessment of the liquefaction resistance of calcareous biogenous sands

Directory of Open Access Journals (Sweden)

Sandoval Eimar

2012-10-01

Full Text Available

ABSTRACT

Liquefaction is a phenomenon in which soils, typically sands, suddenly loose a substantial amount of their shear strength and stiffness, this often triggered by large-magnitude earthquakes. Most liquefaction research has focused on silicate-based sands and not on other sand types, such as calcareous biogenous sands Calcareous sands are usually composed of skeletal or non-skeletal remains of marine organisms, with unique characteristics in terms of their mineralogy surface roughness, particle shape, crushability, and intraparticle porosity. The unique characteristics of calcareous sands suggest that their geotechnical engineering behaviour can be substantially different compared to that of terrigenous sands, including their behaviour under seismic loading, which have not been very well studied

This paper presents the results of an experimental programme aimed at studying the cyclic liquefaction resistance of uncemented calcareous biogenous sands retrieved from south-western Puerto Rico Evaluation of liquefaction potential involved a comprehensive set of isotropically consolidated undrained cyclic triaxial tests on reconstituted samples of this calcareous sand. The programme also included tests on Ottawa terrigenous silica sand samples prepared and tested in similar conditions for comparison purposes.

In general, the experimental results showed that Cabo Rojo calcareous sands had higher liquefaction resistance compared to Ottawa silica sands tested under similar conditions. Important differences between calcareous and silica sands regarding pore pressure generation characteristics and axial strain accumulation were also observed

Comparison of special stains for keratin with routine hematoxylin and eosin stain.

Science.gov (United States)

Rao, Roopa S; Patil, Shankargouda; Majumdar, Barnali; Oswal, Rakesh G

2015-03-01

Keratins are the most abundant proteins and are characteristic findings in many epithelial pathologies, making it a diagnostically important marker, both histopathologically and immunohistochemically. Since, immunohistochemistry is an expensive diagnostic tool, special stains to detect the degree of keratinization could serve as a faster and economic option. The aim of the present study was to compare the efficacy of special stains for keratin with standard hematoxylin and eosin stain (H and E). Objectives include: (i) To subject the diagnosed cases of keratin disorders to the selected special stains: Ayoub-shklar method, Dane-Herman method, Alcian blue -periodic acid Schiff 's (PAS), rapid papanicolaou (PAP) and Gram's stain. (ii) To compare the staining specificity and staining intensity of special stains with respect to routine hematoxylin and eosin (H and E) stain. (iii) To compare the efficacy of special stains to routine H and E stain in identification of the type of keratin present in the selected cases. A total of 80 cases of known pathology for keratin were retrieved from the department archive, which included 10 each of normal gingiva, hyperkeratosis, squamous papilloma, verrucous hyperplasia, verrucous carcinoma, well-differentiated squamous cell carcinoma, orthokeratinized odontogenic cyst and keratocystic odontogenic tumors. Six sections of 4 µ each from the paraffin blocks were made, stained with H and E and the special stains and these were evaluated by 2 pathologists based on the modified scoring criteria from Rahma Al-Maaini and Philip Bryant 2008. The results were tabulated using Chi square and kappa statistics. The statistical values for identification of the type of keratinization was insignificant showing that ortho and parakeratinized epithelia could be correctly identified by both H and E as well as all the special stains. Furthermore, all the special stains showed a positive result and statistical significance (P < 0.001) with respect to

Transport of Calcareous Fragments by Reef Fishes.

Science.gov (United States)

Bardach, J E

1961-01-13

The weight of sand, coral scrapings, algal fragments, and other calcareous materials which pass through the intestines of reef fishes was calculated on a hectare-per-year basis. It was found that browsing omnivorous reef fishes which rely, in part, on a plant diet ingested and redeposited at least 2300 kg of such material on a 1-hectare study reef near Bermuda. Reasons are presented why this estimate, certainly in order of magnitude, should be applicable to coral reefs in general.

Reducing As availability in calcareous soils using nanoscale zero valent iron.

Science.gov (United States)

Azari, Prisa; Bostani, Abdol Amir

2017-09-01

Different methods, including the use of nanoscale zero-valent iron (NZVI), have been used to treat arsenic (As)-contaminated environments, with much less data on the use of NZVI in arsenic-calcareous-polluted soils. Accordingly, two different experiments were conducted to investigate the effects of NZVI on the removal of As from three different calcareous-polluted soils. In the first experiment, the effects of soil type (differing in the rate of clay particles and organic carbon including S1 (8.0 and 0.05%), S2 (20 and 0.2%), and S3 (20.5 and 0.8%)) and NZVI concentration (0, 50, and 100 g kg -1 of dry soil) on the removal of As extractable with distilled water were evaluated using a factorial design with three replicates. In the second experiment, the NZVI concentrations were reduced to 0, 2.5, 5.0, and 25 g kg -1 , and the NZVI contact time (0.5, 48, 96, 192, 384, and 768 h) was also tested. The analysis of variance in both experiments indicated the significant effects (P soils, with increasing NZVI concentration and contact time, the concentration of available As in the solution phase significantly decreased (P = 0.01). S3, due to a higher rate of organic matter, was less responsive to the NZVI treatments than the other soils. The effectiveness of the nanoremediation method, tested in this research work, on the stabilization of As in calcareous soils, is verified.

Late Palaeozoic calcareous algae in the Pisuerga basin (N-Palencia, Spain)

NARCIS (Netherlands)

Rácz, L.

1965-01-01

The calcareous algae were important rock-builders in the deposition of the many limestone members of the Pisuerga Basin. Systematic descriptions are given of 12 species. The following species are new: Clavaporella reinae, Clavaphysoporella endoi, Epimastopora camasobresensis, Psuedoepimastopora?

Biostratigraphy of the Lower Cretaceous Schrambach Formation on the classical locality of Schrambachgraben (Northern Calcareous Alps, Salzburg Area)

Czech Academy of Sciences Publication Activity Database

Boorová, D.; Skupien, P.; Vašíček, Zdeněk

2014-01-01

Roč. 90, č. 1 (2014), s. 89-131 ISSN 1214-1119 Institutional support: RVO:68145535 Keywords : biostratigraphy * Schrambach and Rossfeld formations * Berriasian, Valanginian * calcareous and non-calcareous dinoflagellata * ammonites Subject RIV: DB - Geology ; Mineralogy Impact factor: 1.515, year: 2014 http://www.geology.cz/bulletin/fulltext/1479_Boorova_in_press.pdf

Sunlight-enhanced calcareous deposition on cathodic stainless steel in natural seawater

Digital Repository Service at National Institute of Oceanography (India)

Eashwar, M.; SathishKumar, P.; Ravishankar, R.; Subramanian, G.

In replicate series of experiments in natural seawater, one in full darkness and the other in a 1:1 diurnal cycle with as little as 5 percent of natural solar illumination, sunlight promoted calcareous deposition on cathodic stainless steel surfaces...

The small-scale species mobility in calcareous grasslands - example from southern Poland

Directory of Open Access Journals (Sweden)

Wojciech Bąba

2011-01-01

Full Text Available In this paper I use the different measures of species mobility to describe the fine small-scale dynamics of calcareous grassland built mainly by perennial species and developed in the highly heterogeneous habitat of calcareous rocks. The community showed the low dynamics on a plot-scale (100 m2 and a high one on the scale of 1 m2. However, the studied species differed greatly in calculated indices: turnover rate, (T; 6-64, residence time (RT; 0.5-21.8 y and carousel time (CT; 4-420 y as well as the observed tendency to persistence on the spots (PERSIST and their re-colonisation (AGAIN. This allowed to distinguish the three groups of species: (1 "core species" characterized by high frequency and low T and high CT and RT values, which determine the low dynamics of a community on the plot scale, (2 species with intermediate mobility rate and (3 the group with high mobility rate. The observed cumulative frequencies of all the studied species (CFobs were much lower than expected under the random re-assignation model (CFRR. Moreover, they were also lower than those predicted by random immigration model (CFRI. The results showed that the "complex carousel" model rather than "single carousel" one explained better the small-scale dynamics of calcareous grasslands.

Adsorption and desorption of Am(III) on calcareous soil and its parent material

International Nuclear Information System (INIS)

Li Weijuan; Zhang Fuming; Tao Zuyi

2005-01-01

The adsorption and desorption of Am(III) on a calcareous soil (sierozem) and its parent material (loess) were studied by batch technique. The molarities of the Am(III) aqueous solutions were less than 5 x 10 -9 mol/l. High adsorbability was found of Am(III) on the calcareous soil and its parent material. In order to decrease the adsorption and, hence, to investigate the adsorption characteristics properly, stable Eu 3+ as hold back carrier and analogue was added to the aqueous solution. The relative contributions of CaCO 3 , organic matter (OM) to the Am(III) adsorption on calcareous soil and its parent material were investigated. The adsorption and desorption isotherms of Am(III) on untreated soil and loess and the three kinds of treated soils and three kinds of treated loesses to remove CaCO 3 , OM and both CaCO 3 and OM were determined, respectively. It was found that all isotherms were linear, the average distribution coefficients (K d ) for the untreated soil and for the untreated loess were almost equal, while there was an obvious difference between the values of the average distribution coefficients (K d ) for the treated soil and the treated loess to remove CaCO 3 or OM. The adsorption-desorption hysteresis on the untreated and treated soils and loesses actually occurred and there was an obvious difference between the hysteresis coefficients on both the corresponding treated soil and loess. It can be concluded that the adsorbability of Am(III) on calcareous soil is similar to that on its parent material, and that the contributions of CaCO 3 and OM to the Am(III) adsorption by the untreated soil are different from those by the untreated parent material. (author)

Is succession in wet calcareous dune slacks affected by free sulfide?

NARCIS (Netherlands)

Adema, EB; van Gemerden, H; Grootjans, AP; Adema, Erwin B.; Grootjans, Ab P.; Rapson, G.

Consequences of sulfide toxicity on succession in wet calcareous dune slacks were investigated. Sulfide may exert an inhibitory effect on dune slack plants, but several pioneer species exhibit ROL (Radial Oxygen Loss) and thereby protect themselves against free sulfide. Under oxic conditions free

Laboratory Experiment Investigating the Impact of Ocean Acidification on Calcareous Organisms

Science.gov (United States)

Perera, Alokya P.; Bopegedera, A. M. R. P.

2014-01-01

The increase in ocean acidity since preindustrial times may have deleterious consequences for marine organisms, particularly those with calcareous structures. We present a laboratory experiment to investigate this impact with general, introductory, environmental, and nonmajors chemistry students. For simplicity and homogeneity, calcite was…

Highly calcareous lacustrine soils in the Great Konya Basin, Turkey

NARCIS (Netherlands)

Meester, de T.

1971-01-01

The Great Konya Basin is in the south of the Central Anatolian Plateau in Turkey. It is a depression without outlet to the sea. The central part of the Basin is the floor of a former Pleistocene lake, the Ancient Konya Lake. This area, called the Lacustrine
Plain, has highly calcareous

Cathodic behaviour of stainless steel in coastal Indian seawater: calcareous deposits overwhelm biofilms.

Science.gov (United States)

Eashwar, M; Subramanian, G; Palanichamy, S; Rajagopal, G; Madhu, S; Kamaraj, P

2009-01-01

Type-316 stainless steel (SS) was investigated as the cathode in galvanic couples in full-strength seawater from the Gulf of Mannar on the southeast coast of India. Tests were devised to examine the impact of SS cathodes on anode materials with or without the accrual of marine biofilms. Biofilmed SS cathodes significantly enhanced the rate of corrosion of nickel, causing noble shifts in the couple potentials. With mild steel and zinc as the anodes, calcareous deposits developed quite rapidly on the SS cathodes and led to a significant reduction of bacterial numbers. The calcareous deposits also caused substantial reduction of galvanic corrosion rates for mild steel, whereas there was no difference for zinc. The deposits were identified by XRD as essentially carbonates, oxides and hydroxides of calcium and magnesium. Potentiodynamic polarization performed on the actual couples after disconnection and equilibration provided reasonable interpretations of the galvanic corrosion trends. Data from this work suggest that a potential of about -0.70 V vs. saturated calomel electrode (SCE) should provide optimum protection of SS in warmer, full-strength seawater that supports the precipitation of calcareous deposits. The criterion commonly recommended for temperate conditions of lower water temperature and estuarine waters of lower alkalinity is -1.0 V (SCE).

Endolithic fungi from deep sea calcareous substrata: isolation and laboratory studies

Digital Repository Service at National Institute of Oceanography (India)

Raghukumar, C.; Raghukumar, S.; Sharma, S.; Chandramohan, D.

substrata at 100 atm. in 25 days. This fungus was not capable of acid production on nutrient media in the presence of various carbon sources, nor did it produce proteases. The role of fungi in calcareous substrata in the sea is discussed with reference...

Efficacy of evaluation of rooster sperm morphology using different staining methods.

Science.gov (United States)

Lukaszewicz, E; Jerysz, A; Partyka, A; Siudzińska, A

2008-12-01

This work focused on inexpensive methods of evaluation fowl sperm morphology, based on eosin-nigrosin smears, which can determine disorders in spermatogenesis and can be recommended for evaluating the fertilising potency and selecting males in flocks reproduced by artificial insemination. Four fowl breeds (Black Minorca, Italian Partridge, Forwerk and Greenleg Partridge) were used to determine the efficacy of sperm morphology evaluation using four eosin-nigrosin staining methods (according to Blom, Bakst and Cecil, Morisson, Jaśkowski) and three examiners of different experience (high, medium, novice). There were significant (P< or = 0.01) differences in sperm morphology between Blom's staining method and those of Bakst and Cecil, Morisson or Jaśkowski, irrespective of fowl breed and examiners experience. Blom stain caused sperm head swelling and showed a drastic reduction in the proportion of live spermatozoa with normal morphology. The staining method had a greater influence on sperm morphology evaluation than the experience of the examiners.

Calcareous nannofossils from the Boreal upper Campanian-Maastrichtian Chalk of Denmark

DEFF Research Database (Denmark)

Thibault, Nicolas Rudolph

2010-01-01

Boreal calcareous nannofossil assemblages have been documented from three sections in Denmark. from the Upper Campanian to Upper Maastrichtian (nannofossil zones UC16a(BP) to UC20d(BP)): the Stevns-1 borehole, next to the Cretaceous/Palaeogene boundary section of Stevns Klint, eastern Sjaelland...

Dried gamma-irradiated sewage solids use on calcareous soils: crop yields and heavy metals uptake

International Nuclear Information System (INIS)

McCaslin, B.D.; Sivinski, J.S.

1980-01-01

The fertilizer values of gamma-irradiated digested sewage solids (RDSS) and gamma-irradiated undigested sewage solids (RUSS) have been examined on calcareous soils. Previously published data from Sandia Laboratories have shown that approximately 1 mega-rad of gamma-irradiation effectively destroys pathogenic bacteria, parasites and plant seeds in dried sewage solids. Greenhouse experiments directly comparing gamma-irradiated and non-irradiated undigested and digested dried sewage solids as fertilizers indicate little or no effect of 1 mega-rad gamma radiation treatment on plant yield or plant-nutrient uptake and demonstrated considerable benefit from using sewage solids on calcareous soils. Plant response to undigested sewage solids was considerably greater than to digested sewage solids when applied at levels that were isonitrogenous. The calcareous soils in New Mexico typically range in pH from 7.5 to 9.0, limiting the plant-availability of many elements, especially heavy metals. Soils irrigated with sewage-effluent for 40 years demonstrated beneficial use of supplied plant-nutrients with no apparent increase in plant-uptake of heavy metals. RDSS applied to a calcareous soil low in plant-available iron increased plant growth in the greenhouse considerably more than treatments with equal amounts of nitrogen, phosphorus and iron applied as common fertilizer materials. Plant tissue concentrations of Fe, Zn, Mn and Cu showed that RDSS was a good source of these nutrients. Results also indicated that the total soluble salt concentration of the RDSS was the factor most limiting plant growth. Chromium, Cd, Ni and Pd plant-tissue concentrations were apparently not increased by RDSS treatments. (Auth.)

Discriminative staining methods for the nervous system: luxol fast blue--periodic acid-Schiff--hematoxylin triple stain and subsidiary staining methods.

Science.gov (United States)

Goto, N

1987-09-01

This paper describes a new series of staining methods which can discriminatively demonstrate every structure of the nervous system, including axons and capillaries, in animal and human materials. Methods described in this paper consist of one primary stain, luxol fast blue-periodic acid Schiff-hematoxylin (LPH) and six different subsidiary staining methods. The LPH triple stain can precisely differentiate the following structures: neurons (Nissl bodies, cytoplasm, nuclear membrane and nucleolus), various kinds of nuclei (glia, ependyma, endothelium, leucocyte, connective tissue, etc.), myelin sheaths, neuronal processes (axons and dendrites), reacted glial cell bodies (protoplasmic astrocytes, foamy cells, etc.), blood vessels (arteries, veins and capillaries), meninges, intervening connective tissue, erythrocytes, lipofuscin granules, amyloid bodies, and others. Subsidiary staining methods are also described briefly. Applications are discussed in the context of staining technology and neuromorphological research.

Isolation and identification of ferric reducing bacteria and evaluation of their roles in iron availability in two calcareous soils

Science.gov (United States)

Ghorbanzadeh, N.; Lakzian, A.; Haghnia, G. H.; Karimi, A. R.

2014-12-01

Iron is an essential element for all organisms which plays a crucial role in important biochemical processes such as respiration and photosynthesis. Iron deficiency seems to be an important problem in many calcareous soils. Biological dissimilatory Fe(III) reduction increases iron availability through reduction of Fe(III) to Fe(II). The aim of this study was to isolate, identify and evaluate some bacterial isolates for their abilities to reduce Fe(III) in two calcareous soils. Three bacterial isolates were selected and identified from paddy soils by using 16S rRNA amplification and then inoculated to sterilized and non-sterilized calcareous soils in the presence and absence of glucose. The results showed that all isolates belonged to Bacillus genus and were capable of reducing Fe(III) to Fe(II) in vitro condition. The amount of Fe(III) reduction in sterilized calcareous soils was significantly higher when inoculated with PS23 isolate and Shewanella putrefaciens ( S. putrefaciens) (as positive control) compared to PS16 and PS11 isolates. No significant difference was observed between PS11 and PS16 isolates in the presence of indigenous microbial community. The results also revealed that glucose had a significant effect on Fe(III) reduction in the examined calcareous soil samples. The amount of Fe(III) reduction increased two-fold when soil samples were treated with glucose and inoculated by S. putrefaciens and PS23 in non-sterilized soils.

Gram staining.

Science.gov (United States)

Coico, Richard

2005-10-01

Named after Hans Christian Gram who developed the method in 1884, the Gram stain allows one to distinguish between Gram-positive and Gram-negative bacteria on the basis of differential staining with a crystal violet-iodine complex and a safranin counterstain. The cell walls of Gram-positive organisms retain this complex after treatment with alcohol and appear purple, whereas gram-negative organisms decolorize following such treatment and appear pink. The method described here is useful for assessing bacterial contamination of tissue culture samples or for examining the Gram stain status and morphological features of bacteria isolated from mixed or isolated bacterial cultures.

Medial calcar of proximal humeral fracture as landmark in restoration of humeral length in case of hemiarthroplasty

Czech Academy of Sciences Publication Activity Database

Hromádka, R.; Kuběna, Aleš Antonín; Šmíd, Martin; Popelka, S.

2014-01-01

Roč. 35, č. 5 (2014), s. 473-479 ISSN 0930-1038 Institutional support: RVO:67985556 Keywords : Fracture of proximal humerus * Calcar of humeral fracture * Reconstruction of proximal humerus * Reconstruction of humeral length * Shoulder arthroplasty * Shoulder hemiarthroplasty Subject RIV: FJ - Surgery incl. Transplants Impact factor: 1.047, year: 2014 http://library.utia.cas.cz/separaty/2013/E/smid-medial calcar of proximal humeral fracture as landmark in restoration of humeral length in case of hemiarthroplasty.pdf

Consolidation and strength properties of calcareous sediments from Kaneohe and Kailua Bays, Hawaii

Digital Repository Service at National Institute of Oceanography (India)

Brandes, H.G.; Khadge, N.H.; Nakayama, D.D.

behavior of marine calcareous sediments of biogenic origin. Consolidation and drained triaxial tests indicate that mixed sediments have higher compressibilities and lower strengths compared to high-carbonate sediments. Differences in gradation among high...

Activity and diversity of methane-oxidizing bacteria in glacier forefields on siliceous and calcareous bedrock

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P. A. Nauer

2012-06-01

Full Text Available The global methane (CH₄ cycle is largely driven by methanogenic archaea and methane-oxidizing bacteria (MOB, but little is known about their activity and diversity in pioneer ecosystems. We conducted a field survey in forefields of 13 receding Swiss glaciers on both siliceous and calcareous bedrock to investigate and quantify CH₄ turnover based on soil-gas CH₄ concentration profiles, and to characterize the MOB community by sequencing and terminal restriction fragment length polymorphism (T-RFLP analysis of pmoA. Methane turnover was fundamentally different in the two bedrock categories. Of the 36 CH₄ concentration profiles from siliceous locations, 11 showed atmospheric CH₄ consumption at concentrations of ~1–2 μL L⁻¹ with soil-atmosphere CH₄ fluxes of –0.14 to –1.1 mg m⁻² d⁻¹. Another 11 profiles showed no apparent activity, while the remaining 14 exhibited slightly increased CH₄ concentrations of ~2–10 μL L⁻¹ , most likely due to microsite methanogenesis. In contrast, all profiles from calcareous sites suggested a substantial, yet unknown CH₄ source below our sampling zone, with soil-gas CH₄ concentrations reaching up to 1400 μL L⁻¹. Remarkably, most soils oxidized ~90 % of the deep-soil CH₄, resulting in soil-atmosphere fluxes of 0.12 to 31 mg m⁻² d⁻¹. MOB showed limited diversity in both siliceous and calcareous forefields: all identified pmoA sequences formed only 5 operational taxonomic units (OTUs at the species level and, with one exception, could be assigned to either Methylocystis or the as-yet-uncultivated Upland Soil Cluster γ (USCγ. The latter dominated T-RFLP patterns of all siliceous and most calcareous samples, while Methylocystis dominated in 4 calcareous samples. Members of Upland Soil

Entomopathogenic fungi-based mechanisms for improved Fe nutrition in sorghum plants grown on calcareous substrates.

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Silvia Raya-Díaz

Full Text Available Although entomopathogenic fungi (EPF are best known for their ability to protect crops against insect pests, they may have other beneficial effects on their host plants. These effects, which include promoting plant growth and conferring resistance against abiotic stresses, have been examined in recent years to acquire a better understanding of them. The primary purposes of the present study were (i to ascertain in vitro whether three different strains of EPF (viz., Metarhizium, Beauveria and Isaria would increase the Fe bioavailability in calcareous or non-calcareous media containing various Fe sources (ferrihydrite, hematite and goethite and (ii to assess the influence of the EPF inoculation method (seed dressing, soil treatment or leaf spraying on the extent of the endophytic colonization of sorghum and the improvement in the Fe nutrition of pot-grown sorghum plants on an artificial calcareous substrate. All the EPFs studied were found to increase the Fe availability during the in vitro assay. The most efficient EPF was M. brunneum EAMa 01/58-Su, which lowered the pH of the calcareous medium, suggesting that it used a different strategy (organic acid release than the other two fungi that raised the pH of the non-calcareous medium. The three methods used to inoculate sorghum plants with B. bassiana and M. brunneum in the pot experiment led to differences in re-isolation from plant tissues and in the plant height. These three inoculation methods increased the leaf chlorophyll content of young leaves when the Fe deficiency symptoms were most apparent in the control plants (without fungal inoculation as well as the Fe content of the above-ground biomass in the plants at the end of the experiment. The total root lengths and fine roots were also increased in response to fungal applications with the three inoculation methods. However, the soil treatment was the most efficient method; thus, its effect on the leaf chlorophyll content was the most

Zanclean/Piacenzian transition on Cyprus (SE Mediterranean): calcareous nannofossil and Sea Surface Temperatures evidence of sapropel formation

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Athanasiou, Maria; Triantaphyllou, Maria; Bouloubassi, Ioanna; Dimiza, Margarita; Gogou, Alexandra; Klein, Vincent; Parinos, Constantine; Theodoroyu, George

2016-04-01

Quantitative analyses of calcareous nannofossils in the sediments of Pissouri South section on the island of Cyprus have produced a paleoceanographic record reflecting the paleoclimatic conditions during Zanclean/Piacenzian transition. According to the performed calcareous nannofossil biostratigraphy the studied section is correlated with MNN14/15 and MNN16 calcareous nannofossil biozones and is astronomically dated between 4.065 and 3.217 Ma. Intervals of increased organic carbon content along with the positive values of Florisphaera profunda, Helicosphaera sellii, Discoaster spp. and the subsequent increase of stratification S-index correspond to the sapropel deposition during periods of wetter climate and intense continental runoff especially from the river Nile. These layers are alternating with grey marly intervals, featured by the increased values of small placoliths of Reticulofenestra and Gephyrocapsa species, which are indicative of eutrophic conditions during intense surface waters mixing. Pissouri South section comprises a SSTs sequence using alkenone unsaturation index (Uk 37) providing with the first continuous record from SE Mediterranean covering the Zanclean/Piacenzian (Pliocene) transition (~ 4.1-3.2 Ma). Correlation of the total alkenone concentration to the calcareous nannofossil assemblage and especially representatives among Noelaerhabdaceae family revealed that Pseudoemiliania lacunosa probably had similar temperature sensitivity to that of Emiliania huxleyi, currently producing alkenones in present day oceans.Our data support the prevalence of a generally warm phase characterized by the absence of high-frequency climate variations in the southeastern Mediterranean during the Zanclean/Piacenzian (Early/Late Pliocene) transition.

Calcareous nannoplankton and benthic foraminiferal assemblages from the Nazare Canyon (Portuguese continental margin): Preliminary results

International Nuclear Information System (INIS)

Guerreiro, C; Oliveira, A; Rodrigues, A; Rosa, F; Cachao, M; Fatela, F

2009-01-01

Submarine canyons are assumed to play an important role in oceanic/neritic circulation, marine productivity and sedimentary processes, acting as preferential conduits between the littoral and deep oceanic domain. Here we present first results of a comparative micropalaeontological study on calcareous nannoplankton and benthic foraminifera from surface sediments from the surroundings of the upper Nazare Canyon (Portuguese continental margin) and from the shelf north of the canyon. Regardless of the difficulty to distinguish taphonomical from (palaeo)ecological effects in such a complex and still poorly known marine system, the first results suggest that the canyon's hydro-sedimentary dynamic regime act as a prolongation of the shore/inner shelf hydrodynamic conditions towards west, preventing deposition and/or preservation of the smaller and fragile species of calcareous nannoplankton (e.g. E. huxleyi and G. ericsonii) and enhancing the record of the larger and more opportunistic ones (e.g. G. oceanica); and disturbing benthic foraminiferal productivity and/or diversity, or their preservation in the fossil record. Both calcareous nannoplankton and benthic foraminifera are more abundant off the canyon's domain, suggesting that its highly energetic thalweg conditions are probably filtering the fossil record in the sediment. Still, preliminary results suggest that the occurrence of persistent physical phenomena related with the canyon's morphology and proximity to the coast (e.g. solitary internal waves) may be locally promoting favourable conditions for calcareous nannoplankton, as shown by high values of nannoliths, chlorophyll a and 19' hexanoyloxyfucoxantine (unpublished data) north of the canyon's head. It is our goal to test this hypothesis in the near future by (a) studying multicore and surficial sediments from more recent surveys, and (b) calibrating the sediment results with water column data presently in process at the Institute of Oceanography (IO).

Calcareous nannoplankton and benthic foraminiferal assemblages from the Nazare Canyon (Portuguese continental margin): Preliminary results

Energy Technology Data Exchange (ETDEWEB)

Guerreiro, C; Oliveira, A; Rodrigues, A [Division of Marine Geology, Portuguese Hydrographic Institute (IH), Rua das Trinas 49, 1249-093 Lisboa (Portugal); Rosa, F [CIACOMAR, Algarve University, Av. 16 de Julho s/n 8700-311 Olhao (Portugal); Cachao, M; Fatela, F [Geology Center and Geology Department, FCUL, Bloco C6, 3o Piso, sala 6.3.57 Campo Grande 1749-016 Lisboa (Portugal)], E-mail: catarina.guerreiro@hidrografico.pt

2009-01-01

Submarine canyons are assumed to play an important role in oceanic/neritic circulation, marine productivity and sedimentary processes, acting as preferential conduits between the littoral and deep oceanic domain. Here we present first results of a comparative micropalaeontological study on calcareous nannoplankton and benthic foraminifera from surface sediments from the surroundings of the upper Nazare Canyon (Portuguese continental margin) and from the shelf north of the canyon. Regardless of the difficulty to distinguish taphonomical from (palaeo)ecological effects in such a complex and still poorly known marine system, the first results suggest that the canyon's hydro-sedimentary dynamic regime act as a prolongation of the shore/inner shelf hydrodynamic conditions towards west, preventing deposition and/or preservation of the smaller and fragile species of calcareous nannoplankton (e.g. E. huxleyi and G. ericsonii) and enhancing the record of the larger and more opportunistic ones (e.g. G. oceanica); and disturbing benthic foraminiferal productivity and/or diversity, or their preservation in the fossil record. Both calcareous nannoplankton and benthic foraminifera are more abundant off the canyon's domain, suggesting that its highly energetic thalweg conditions are probably filtering the fossil record in the sediment. Still, preliminary results suggest that the occurrence of persistent physical phenomena related with the canyon's morphology and proximity to the coast (e.g. solitary internal waves) may be locally promoting favourable conditions for calcareous nannoplankton, as shown by high values of nannoliths, chlorophyll a and 19' hexanoyloxyfucoxantine (unpublished data) north of the canyon's head. It is our goal to test this hypothesis in the near future by (a) studying multicore and surficial sediments from more recent surveys, and (b) calibrating the sediment results with water column data presently in process at the Institute of

Geochemistry and hydrology of a calcareous fen within the Savage Fen wetlands complex, Minnesota, USA

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Komor, S.C.

1994-01-01

Savage Fen is a wetlands complex at the base of north-facing bluffs in the Minnesota River Valley. The complex includes 27.8 hectares of calcareous fen that host rare calciphile plants whose populations are declining in Minnesota. Water and sediment compositions in the calcareous fen were studied to gain a better understanding of the hydrologie System that sustains the rare vegetation. Groundwater in the fen is a calcium-magnesium-bicarbonate type with circumneutral pH values. The groundwater composition is the resuit of interactions among water, dissolved and gaseous carbon species, carbonates, and ion exchangers. Shallow groundwater is distinguished from deep groundwater by smaller concentrations of chloride, sulfate, magnesium, and sodium, and larger concentrations of calcium, bicarbonate, hydrogen sulfide, and ammonium. Magnesian calcite is the prevalent carbonate in unconsolidated sedimentary fill beneath the fen and is an important source and sink for dissolved calcium, magnesium, and inorganic carbon. Calcite concentrations just below the water table are small because aerobic and anaerobic oxidation of organic matter increase the partial pressure of carbon dioxide (PCO2), decrease pH, and cause calcite to dissolve. Thick calcite accumulations just above the water table, in the root zone of calciphile plants, result from water table fluctuations and attendant changes in PCO2. Groundwater beneath Savage Fen recharges in lakes and ponds south of the fen and upwells to the surface within the fen. Water at the water table is a mixture of upwelling groundwater and water near the surface that flows downslope from higher elevations in the fen. Changes in oxygen and hydrogen isotope compositions of shallow groundwater indicate that the proportion of upwelling groundwater in shallow groundwater decreases downgradient in the calcareous fen. Encroachment of reed grasses into the calcareous fen may reflect human-caused disturbances in the recharge area.

Iron biofortification of wheat grains through integrated use of organic and chemical fertilizers in pH affected calcareous soil.

Science.gov (United States)

Ramzani, Pia Muhammad Adnan; Khalid, Muhammad; Naveed, Muhammad; Ahmad, Rashid; Shahid, Muhammad

2016-07-01

Incidence of iron (Fe) deficiency in human populations is an emerging global challenge. This study was conducted to evaluate the potential of iron sulphate combined with biochar and poultry manure for Fe biofortification of wheat grains in pH affected calcareous soil. In first two incubation studies, rates of sulfur (S) and Fe combined with various organic amendments for lowering pH and Fe availability in calcareous soil were optimized. In pot experiment, best rate of Fe along with biochar (BC) and poultry manure (PM) was evaluated for Fe biofortification of wheat in normal and S treated low pH calcareous soil. Fe applied with BC provided fair increase in root-shoot biomass and photosynthesis up to 79, 53 and 67%, respectively in S treated low pH soil than control. Grain Fe and ferritin concentration was increased up to 1.4 and 1.2 fold, respectively while phytate and polyphenol was decreased 35 and 44%, respectively than control in treatment where Fe was applied with BC and S. In conclusion, combined use of Fe and BC could be an effective approach to improve growth and grain Fe biofortification of wheat in pH affected calcareous soil. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Influence of Blended Cements with Calcareous Fly Ash on Chloride Ion Migration and Carbonation Resistance of Concrete for Durable Structures.

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Glinicki, Michał A; Jóźwiak-Niedźwiedzka, Daria; Gibas, Karolina; Dąbrowski, Mariusz

2016-01-02

The objective of this paper is to examine the possible use of new blended cements containing calcareous fly ash in structural concrete, potentially adequate for structural elements of nuclear power plants. The investigation included five new cements made with different contents of non-clinker constituents: calcareous fly ash, siliceous fly ash, ground granulated blastfurnace slag, and a reference cement-ordinary Portland cement. The influence of innovative cements on the resistance of concrete to chloride and carbonation exposure was studied. Additionally, an evaluation of the microstructure was performed using optical microscopy on concrete thin sections. Test results revealed a substantial improvement of the resistance to chloride ion penetration into concrete containing blended cements. The resistance was higher for increased clinker replacement levels and increased with curing time. However, concrete made with blended cements exhibited higher depth of carbonation than the Portland cement concrete, except the Portland-fly ash cement with 14.3% of calcareous fly ash. The thin sections analysis confirmed the values of the carbonation depth obtained from the phenolphthalein test. Test results indicate the possible range of application for new cements containing calcareous fly ash.

Influence of Blended Cements with Calcareous Fly Ash on Chloride Ion Migration and Carbonation Resistance of Concrete for Durable Structures

Directory of Open Access Journals (Sweden)

Michał A. Glinicki

2016-01-01

Full Text Available The objective of this paper is to examine the possible use of new blended cements containing calcareous fly ash in structural concrete, potentially adequate for structural elements of nuclear power plants. The investigation included five new cements made with different contents of non-clinker constituents: calcareous fly ash, siliceous fly ash, ground granulated blastfurnace slag, and a reference cement—ordinary Portland cement. The influence of innovative cements on the resistance of concrete to chloride and carbonation exposure was studied. Additionally, an evaluation of the microstructure was performed using optical microscopy on concrete thin sections. Test results revealed a substantial improvement of the resistance to chloride ion penetration into concrete containing blended cements. The resistance was higher for increased clinker replacement levels and increased with curing time. However, concrete made with blended cements exhibited higher depth of carbonation than the Portland cement concrete, except the Portland-fly ash cement with 14.3% of calcareous fly ash. The thin sections analysis confirmed the values of the carbonation depth obtained from the phenolphthalein test. Test results indicate the possible range of application for new cements containing calcareous fly ash.

Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation.

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Najah Alsubaie

Full Text Available Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution of histology images. This approach statistically analyses the multi-resolutional representation of the image to separate the independent observations out of the correlated ones. We then estimate the stain mixing matrix using filtered uncorrelated data. We conducted an extensive set of experiments to compare the proposed method to the recent state of the art methods and demonstrate the robustness of this approach using three different datasets of scanned slides, prepared in different labs using different scanners.

The potential of willow for remediation of heavy metal polluted calcareous urban soils

DEFF Research Database (Denmark)

Jensen, J K; Holm, P E; Nejrup, J

2009-01-01

Growth performance and heavy metal uptake by willow (Salix viminalis) from strongly and moderately polluted calcareous soils were investigated in field and growth chamber trials to assess the suitability of willow for phytoremediation. Field uptakes were 2-10 times higher than growth chamber...

Morphological characteristics of developmental stages of Acanthamoeba and Naegleria species before and after staining by various techniques.

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Ithoi, Init; Ahmad, Arine-Fadzlun; Mak, J W; Nissapatorn, Veeranoot; Lau, Yee-Ling; Mahmud, Rohela

2011-11-01

Seven stains were studied to determine the best color and contrast for staining the developmental stages of free living pathogenic Acanthamoeba and Naegleria species. The acid-fast bacilli stain (AFB) produced a blue color without contrast; trichrome-eosin and modified Field's showed various color contrasts; Giemsa, iron-hematoxylin, modified AFB and Gram produced only one color which distinguished the nucleus, nucleolus, cytoplasm, food- and water-vacuoles. The motile organs (acanthopodia, pseudopodia, lobopodia and flagella) were also clearly differentiated but produced a similar color as the cytoplasm. These motile organelles were first induced by incubating at 37 degrees C for at least 15 minutes and then fixing with methanol in order to preserve the protruding morphology prior to staining. The trichrome-eosin and iron-hematoxylin stains showed good color contrast for detecting all three stages, the trophozoite, cyst and flagellate; Giemsa and Gram stained the trophozoite and flagellate stages; the modified Field's and modified AFB stains stained only the trophozoite stage. Depending on the purpose, all these stains (except the AFB stain) can be used to identify the developmental stages of Acanthamoeba and Naegleria for clinical, epidemiological or public health use.

The Luna stain, an improved selective stain for detection of microsporidian spores in histologic sections

Science.gov (United States)

Peterson, Tracy S.; Spitsbergen, Jan M.; Feist, Stephen W.; Kent, Michael L.

2014-01-01

Microsporidia in histologic sections are most often diagnosed by observing spores in host tissues. Spores are easy to identify if they occur in large aggregates or xenomas when sections are stained with hematoxylin and eosin (H&E). However, individual spores are not frequently detected in host tissues with conventional H&E staining, particularly if spores are scattered within the tissues, areas of inflammation or small spores in nuclei (i.e., Nucleospora salmonis). Hence, a variety of selective stains that enhance visualization of spores are recommended. We discovered that the Luna stain, used to highlight eosinophils, red blood cells and chitin in arthropods and other invertebrates, also stains spores of Pseudoloma neurophilia. We compared this stain to the Gram, Fite’s acid fast, Giemsa, and H&E stains on eight aquatic microsporidian organisms that were readily available in our two laboratories: Loma salmonae, Glugea anomala, Pseudoloma neurophilia, Pleistophora hyphessobryconis, Pleistophora vermiformis, Glugea sp., Steinhausia mytilovum and an unidentified microsporidian from E. sinensis, UK. Based on tinctorial properties and background staining, the Luna stain performed better for detection of 6 of the 8 microsporidia. Gram stain was superior for the two microsporidia from invertebrates, Steinhausia mytilovum and the unidentified microsporidian from E. sinensis. PMID:21848126

Two new species of calcareous sponges (Porifera: Calcarea) from the deep Antarctic Eckström Shelf and a revised list of species found in Antarctic waters

DEFF Research Database (Denmark)

Rapp, Hans Tore; Göcke, Christian; Tendal, Ole Secher

2013-01-01

The paper reports on two new species of calcareous sponges (Porifera, Calcarea) from the Antarctic Weddell Sea, Clathrina brandtae sp. nov. and Leucetta delicata sp. nov., collected at 600 m depth during the ANT XXIV/2-SYSTCO expedition in January 2008. The new species are described based...... on a combination of morphological and molecular data. With these new additions the number of species of calcareous sponges reported from south of 50 degrees S (similar to south of the Polar Front) reaches 50 species. We report an exceptionally high degree of endemism within the group, and as many as 44 out...... of the 50 species of calcareous sponges are solely confined to Antarctic waters. An updated list of species of calcareous sponges from the area is provided....

Pleural and Pulmonary Staining at Inferior Phrenic Arteriography Mimicking a Tumor Staining of Hepatocellular Carcinoma

International Nuclear Information System (INIS)

Lee, Deok Hee; Hwang, Jae Cheol; Lim, Soo Mee; Yoon, Hyun-Ki; Sung, Kyu-Bo; Song, Ho-Young

2000-01-01

Purpose: To describe the findings of pleural and pulmonary staining of the inferior phrenic artery, which can be confused with tumor staining during transarterial chemoembolization (TACE) of hepatoma.Methods: Fifteen patients who showed pleural and pulmonary staining without relationship to hepatic masses at inferior phrenic arteriography were enrolled. The staining was noted at initial TACE (n = 8), at successive TACE (n = 5), and after hepatic surgery (n = 2). The angiographic pattern, the presence of pleural change on computed tomography (CT), and clinical history were evaluated.Results: Draining pulmonary veins were seen in all cases. The lower margin of the staining corresponded to the lower margin of the pleura in 10 patients. CT showed pleural and/or pulmonary abnormalities in all cases. After embolization of the inferior phrenic artery, the accumulation of iodized oil in the lung was noted.Conclusion: Understanding the CT and angiographic findings of pleural and pulmonary staining during TACE may help differentiate benign staining from tumor staining

Adsorption and co-adsorption of diclofenac and Cu(II) on calcareous soils.

Science.gov (United States)

Graouer-Bacart, Mareen; Sayen, Stéphanie; Guillon, Emmanuel

2016-02-01

Pharmaceuticals are emerging contaminants and their presence in different compartments of the environment has been detected in many countries. In this study, laboratory batch experiments were conducted to characterize the adsorption of diclofenac, a widely used non-steroidal anti-inflammatory drug, on six calcareous soils. The adsorption of diclofenac was relatively low, which may lead to a risk of groundwater contamination and plant uptake. A correlation between the soil-water distribution coefficient Kd and soil characteristics has been highlighted. Indeed, diclofenac adsorption as a function of soil organic matter content (% OM) and Rt=% CaCO3/% OM was successfully described through a simple empirical model, indicating the importance of considering the inhibiting effect of CaCO3 on OM retention properties for a better assessment of diclofenac fate in the specific case of calcareous soils. The simultaneous co-adsorption of diclofenac and copper - a ubiquitous pollutant in the environment - at the water/soil interface, was also investigated. It appeared quite unexpectedly that copper did not have a significant influence on diclofenac retention. Copyright © 2015 Elsevier Inc. All rights reserved.

The potential of residues of furfural and biogas as calcareous soil amendments for corn seed production.

Science.gov (United States)

Zhao, Yunchen; Yan, Zhibin; Qin, Jiahai; Ma, Zhijun; Zhang, Youfu; Zhang, Li

2016-04-01

Intensive corn seed production in Northwest of China produced large amounts of furfural residues, which represents higher treatment cost and environmental issue. The broad calcareous soils in the Northwest of China exhibit low organic matter content and high pH, which led to lower fertility and lower productivity. Recycling furfural residues as soil organic and nutrient amendment might be a promising agricultural practice to calcareous soils. A 3-year field study was conducted to evaluate the effects of furfural as a soil amendment on corn seed production on calcareous soil with compared to biogas residues. Soil physical-chemical properties, soil enzyme activities, and soil heavy metal concentrations were assessed in the last year after the last application. Corn yield was determined in each year. Furfural residue amendments significantly decreased soil pH and soil bulk density. Furfural residues combined with commercial fertilizers resulted in the greater cumulative on soil organic matter, total phosphorus, available phosphorus, available potassium, and cation exchange capacity than that of biogas residue. Simultaneously, urease, invertase, catalase, and alkaline phosphatase increased even at the higher furfural application rates. Maize seed yield increased even with lower furfural residue application rates. Furfural residues resulted in lower Zn concentration and higher Cd concentration than that of biogas residues. Amendment of furfural residues led to higher soil electrical conductivity (EC) than that of biogas residues. The addition of furfural residues to maize seed production may be considered to be a good strategy for recycling the waste, converting it into a potential resource as organic amendment in arid and semi-arid calcareous soils, and may help to reduce the use of mineral chemical fertilizers in these soils. However, the impact of its application on soil health needs to be established in long-term basis.

The Eocene Rusayl Formation, Oman, carbonaceous rocks in calcareous shelf sediments: Environment of deposition, alteration and hydrocarbon potential

Energy Technology Data Exchange (ETDEWEB)

Dill, H.G.; Wehner, H.; Kus, J. [Federal Institute for Geosciences and Natural Resources, P.O. Box 510163, D-30631 Hannover (Germany); Botz, R. [University Kiel, Geological-Paleontological Department, Olshausenstrasse 40-60, D-24118 Kiel (Germany); Berner, Z.; Stueben, D. [Technical University Karlsruhe, Institute for Mineralogy and Geochemistry, Fritz-Haber-Weg 2, D-76131 Karlsruhe (Germany); Al-Sayigh, A. [Sultan Qaboos University, Geological Dept. PO Box 36, Al-Khod (Oman)

2007-10-01

Paralic carbonaceous series intercalated among calcareous shelf sediments have seldom been investigated. During the early Eocene, calcareous and siliciclastic sediments were deposited on a wide shelf in front of low-reliefed hinterland in the Al Khawd region in NE Oman. The siliciclastic-calcareous sediments originated from strongly reworked debris of the Arabic Shield. The underlying Semail Ophiolite did not act as a direct source of debris but provided some heat to increase the maturity of carbonaceous rocks and modify the isotope signal of the calcareous minerals in the Rusayl Formation. A multidisciplinary approach involving sedimentology, mineralogy, chemistry, coal petrography and paleontology resulted in the establishment of nine stratigraphic lithofacies units and provides the reader with a full picture from deposition of the mixed carbonaceous-calcareous-siliciclastic rocks to the most recent stages of post-depositional alteration of the Paleogene formations. The calcareous Jafnayn Formation (lithofacies unit I) developed in a subtidal to intertidal regime, influenced episodically by storms. Deepening of the calcareous shelf towards younger series was ground to a halt by paleosols developing on a disconformity (lithofacies unit II) and heralding the onset of the Rusayl Formation. The stratigraphic lithofacies units III and IV reflect mangrove swamps which from time to time were flooded through washover fans from the open sea. The presence of Spinozonocolpites and the taxon Avicennia, which today belong to a coastal marsh vegetational community, furnish palynological evidence to the idea of extensive mangrove swamps in the Rusayl Formation [El Beialy, S.Y., 1998. Stratigraphic and palaeonenvironmental significance of Eocene palynomorphs from the Rusayl Shale Formation, Al Khawd, northern Oman. Review of Palaeobotany and Palynology 102, 249-258]. During the upper Rusayl Formation (lithofacies units V through VII) algal mats episodically flooded by marine

DRY CALCAREOUS GRASSLAND COMMUNITIES (FILIPENDULA VULGARIS-HELICTOTRICHON PRATENSE IN WESTERN AND CENTRAL LATVIA

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S. RUSINA

2003-06-01

Full Text Available The dry calcareous grassland vegetation of Westem and Central Latvia is described based on 93 rclevés, Ali relevés could be assigned to one community type Filipendula vulgaris-Helictotrichon pratense named according to dominant species. Four variants were distinguished: typicum, Viscaria vulgaris, Astragalus danicus and Carex flacca. Ellenberg indìcator values were calculated to study the ecology of communities. Floristic differences among variants are associated mainly with soil reaction (Ellenberg indicator values for soil pH range from 6.0 to 7.6, but conditions of moisture and fertility are similar among the variants. The calcareous grassland vegetation in Latvia represents transition vegetation between the c1asses Molinio-Arrhenatheretea and Festuco-Brometea. However, ecologically and floristically, these communities are closer to the class Festuco-Brometea and could be assigned to the order Brometalia. For designation to alliance and associations, more data is required. The results are compared with similar communities in other European countries.

Physiological Responses of Some Iranian Grape Cultivars to Iron Chelate Application in Calcareous Soil

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H. Doulati Baneh

2016-07-01

Full Text Available Introduction: Iron chlorosis is considered to be one of the most important nutritional disorders in grapevines, particularly in calcareous soils that under these conditions fruit yield and quality is depressed in the current year and fruit buds poorly develop for following year. Symptoms of iron chlorosis in orchards and vineyards are usually more frequent in spring when shoot growth is rapid and bicarbonate concentration in the soil solution buffers soil pH in the rhizosphere and root apoplast. Several native grapevine (Vitis vinifera L. genotypes, highly appreciated for their organoleptic characteristics and commercial potential, are widely cultivated in Iran. Cultivated plants differ as to their susceptibility to Fe deficiency in calcareous soils, some being poorly affected while others showing severe leaf chlorotic symptoms. Selection and the use of Fe-efficient genotypes is one of the important approaches to prevent this nutritional problem. In this research the response of three local grapevine cultivars was evaluated to iron chelate consumption in a calcareous soil (26% T.N.V. Materials and Methods: Well rooted woody cuttings of three autochthonous varieties (Rasha, Qezel uzum, Keshmeshi Qermez were cultivated in pots filled with a calcareous soil with iron chelate consumption at three rates (0, 7.5 and 15 mg Fe/ Kg soil. The study was conducted with two factors (cultivar and iron chelate and 3 replicates in a factorial arrangement based on randomized complete block design. Plant parameters including vegetative growth, chlorophyll index and leaf area were monitored during the growth period. At the end of the treatment, fresh and dry weight of shoots and roots were determined. The concentrations of macro and micro elements in the leaves were assayed using an atomic absorption and spectrophotometer. One-way-ANOVA was applied comparing the behavior of the cultivars growing. Results and Discussion: Analysis of variance showed that chlorophyll

The first marine record of the Bartonian Nummulites and Calcareous nannofossils at the Tihoiyeh section of the Jiroft area (Central Iran)

Science.gov (United States)

Hadi, Mehdi; Parandavar, Mohammad; Kiani-Shahvandi, Madineh; Dabaghi Sadr, Fatemeh

2016-04-01

The studied shallow marine sediments are situated south and southwest of Jiroft town, 180 km south of Keman, from the Tihoiyeh section (near Tihoiyeh village). These deposits at the top of the section include marly limestones with index Nummulites species such as N. perforatus (De Montfort), N. lyelli (D'Archiac and Haime). According to Schaub's nummulitic time scale (1981) and shallow benthic zonation of Serra-Kiel et al. (1998), this interval referred to Bartonian age and SBZ17 zone, respectively. Also, the calcareous nannofossil study on this interval led to identification of 19 well-preserved species belonging to 11 genera of this plankton group. Based on determined index calcareous nannofossiltaxa such as Reticulofenestra bisecta, Sphenolithus obtusus, Sphenolithus intercalaris, Cribrocentrum erbae and associated species such as Sphenolithus pseudoradians, Reticulofenestra wadeae, Cribrocentrum reticulatum and Blackites spinosus this interval assigned to the CNE15 zone of Agnini et al. (2014) that corresponds to upper part of NP16 and lower part of NP17 zones of Martini (1971). It is resulted that, the detected shallow benthic foraminifera zone, corresponds to the calcareous nannofossil zones both indicating Bartonian age. Keywords: Bartonian, Calcareous nannofossil, Nummulites, Central Iran, Tihoiyeh section. References: Agnini, C., Fornaciari, E., Raffi, I, Rita Catanzariti, R., Palike, H., Backman, J. and Rio, D., 2014. Biozonation and biochronology of Paleogene calcareous nannofossils from low and middle latitudes. Newsletters on Stratigraphy, Vol. 47 (2), Pp. 131-181. Martini, E., 1971. Standard Tertiary and Quaternary calcareous nannoplankton zonation. In: Farinacci, A. (Ed.), Proceedings 2nd International Conference Planktonic Microfossils Roma: Rome (Ed. Tecnosci.), 2, Pp. 739-785. Serra-Kiel, J., Hottinger, L., Caus, E., Drobne, K., Fernandez, C., Jauhri, A.K., Less, G., Pavlovec, R., Pignatti, J., Samso, J.M., Schaub, H., Sirel, E., Strougo, A

Gram staining with an automatic machine.

Science.gov (United States)

Felek, S; Arslan, A

1999-01-01

This study was undertaken to develop a new Gram-staining machine controlled by a micro-controller and to investigate the quality of slides that were stained in the machine. The machine was designed and produced by the authors. It uses standard 220 V AC. Staining, washing, and drying periods are controlled by a timer built in the micro-controller. A software was made that contains a certain algorithm and time intervals for the staining mode. One-hundred and forty smears were prepared from Escherichia coli, Staphylococcus aureus, Neisseria sp., blood culture, trypticase soy broth, direct pus and sputum smears for comparison studies. Half of the slides in each group were stained with the machine, the other half by hand and then examined by four different microbiologists. Machine-stained slides had a higher clarity and less debris than the hand-stained slides (p stained slides, some Gram-positive organisms showed poor Gram-positive staining features (p Gram staining with the automatic machine increases the staining quality and helps to decrease the work load in a busy diagnostic laboratory.

Crop Yield and Soil Properties in the First 3 Years After Biochar Application to a Calcareous Soil

Institute of Scientific and Technical Information of China (English)

LIANG Feng; LI Gui-tong; LIN Qi-mei; ZHAO Xiao-rong

2014-01-01

It remains unclear whether biochar applications to calcareous soils can improve soil fertility and crop yield. A long-term ifeld experiment was established in 2009 so as to determine the effect of biochar on crop yield and soil properties in a calcareous soil. Five treatments were: 1) straw incorporation; 2) straw incorporation with inorganic fertilizer; 3), 4) and 5) straw incorporation with inorganic fertilizer, and biochar at 30, 60, and 90 t ha-1, respectively. The annual yield of either winter wheat or summer maize was not increased signiifcantly following biochar application, whereas the cumulative yield over the ifrst 4 growing seasons was signiifcantly increased. Soil pH, measured in situ, was increased by a maximum of 0.35 units after 2 yr following biochar application. After 3 yr, soil bulk density signiifcantly decreased while soil water holding capacity increased with adding biochar of 90 t ha-1. Alkaline hydrolysable N decreased but exchangeable K increased due to biochar addition. Olsen-P did not change compared to the treatment without biochar. The results suggested that biochar could be used in calcareous soils without yield loss or signiifcant impacts on nutrient availability.

Potential use of calcareous mudstones in low hydraulic conductivity earthen barriers for environmental applications.

Science.gov (United States)

Musso, T B; Francisca, F M; Musso, T B; Musso, T B

2013-01-01

Earthen layers play a significant role in isolating contaminants in the subsurface, controlling the migration of contaminant plumes, and as landfill liners and covers. The physical, chemical and mineralogical properties of three calcareous mudstones from the Jagüel and Roca formations in North Patagonia, Argentina, are evaluated to determine their potential for the construction of liners. These mudstones were deposited in a marine environment in the Upper Cretaceous-Paleocene. The tested specimens mainly comprise silt and clay-sized particles, and their mineralogy is dominated by a smectite/illite mixed layer (70-90% Sm) and calcite in smaller proportion. Powdered mudstone samples have little viscosity and swelling potential when suspended in water. The hydraulic conductivity of compacted mudstones and sand-mudstone mixtures is very low (around 1-3 x 10(-10) m/s) and in good agreement with the expected hydraulic behaviour of compacted earthen layers. This behaviour can be attributed to the large amount of fine particles, high specific surface and the close packing of particles as confirmed by scanning electron microscope analysis. The tested materials also show a high cation exchange capacity (50-70 cmol/kg), indicating a high contaminant retardation capability. The calcareous mudstones show satisfactory mineralogical and chemical properties as well as an adequate hydraulic behaviour, demonstrating the potential use of these materials for the construction of compacted liners for the containment of leachate or as covers in landfills. These findings confirm the potential usage of marine calcareous mudstones as a low-cost geomaterial in environmental engineering projects.

LEAF MINERAL CONCENTRATION OF FIVE OLIVE CULTIVARS GROWN ON CALCAREOUS SOIL

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Igor Pasković

2013-12-01

Full Text Available There are limited numbers of scientific publication regarding genotypic differences which exist among olive cultivars concerning nutrient uptake and translocation. For that purpose, the object of our study was to determine possible differences between leaf mineral content of five selected olive cultivars since leaf nutrient analysis is consider being the best method for diagnosing olive tree nutritional status. Plant material was obtained from an olive collection, grown on calcareous soil maintained at Institute of Adriatic Crops and Karst Reclamation, Split, Croatia. The study was conducted with two Croatian autochthonous olive cultivars (“Istarska bjelica”, “Lastovka”, two Italian cultivars (“Pendolino”, “Leccino” and one Spanish cultivar (“Hojiblanca”. Completely randomized design was applied. This study has shown questionably low Mg concentration in all olive cultivars with exception for “Hojiblanca” cultivar. Also, only Croatian cultivars “Istarska bjelica” and “Lastovka” as well as Spanish cultivar “Hojiblanca” recorded sufficient levels of iron leaf mineral content. Regarding other elements studied (P, K, Ca, Zn, Mn, Cu all cultivars were above literature cited thresholds for possible deficiencies. Selected olive cultivars in our experiment demonstrated different nutrient leaf concentration, which is of particular importance for fertilization requirements and fertilization practice in Croatian orchards grown on calcareous soil.

Foraminiferans as food for Cephalaspideans (Gastropoda: Opisthobranchia), with notes on secondary tests around calcareous foraminiferans

DEFF Research Database (Denmark)

Cedhagen, Tomas

1996-01-01

species, Ammonia batavus and two agglutinating species, Ammoscalaria pseudospiralis and Ammotium cassis. The test (shell) material of the latter two species was sand grains (quartz). It was inferred that the gastropods avoid agglutinating foraminiferans as food. Many calcareous but not agglutinating......The food of four species of Cephalaspidea (Philine aperta, Philine denticulata, Philine scabra and Cylichna cylindracea) was studied in animals collected on silty clay bottoms at 20-35 m depth on the west coast of Sweden. The specimens were dissected. Only calcareous foraminiferans were found...... foraminiferans surround themselves with a “secondary test”, a cyst or covering of foreign particles around the test. This structure has earlier been called a “reproductive cyst” or “feeding cyst” in some species. “Secondary tests” are primarily connected with feeding, but might also be a preadaptation for other...

Calcareous forest seepages acting as biodiversity hotspots and refugia for woodland snail faunas

Science.gov (United States)

Horsák, Michal; Tajovská, Eva; Horsáková, Veronika

2017-07-01

Land-snail species richness has repeatedly been found to increase with the increasing site calcium content and humidity. These two factors, reported as the main drivers of land-snail assemblage diversity, are also among the main habitat characteristics of calcareous seepages. Here we explore local species richness and compositional variation of forest spring-fed patches (i.e. seepages), to test the hypothesis that these habitats might act as biodiversity hotspots and refugia of regional snail faunas. In contrast to treeless spring fens, only little is known about land snail faunas inhabiting forest seepages. Studying 25 isolated calcareous forest seepages, evenly distributed across the White Carpathians Protected Landscape Area (SE Czech Republic), we found that these sites, albeit spatially very limited, can harbour up to 66% of the shelled land-snail species known to occur in this well-explored protected area (in total 83 species). By comparing land snail assemblages of the studied seepages with those occurring in the woodland surroundings of each site as well as those previously sampled in 28 preserved forest sites within the study area, we found the seepages to be among the most species rich sites. Although the numbers of species did not statistically differ among these three systems, we found highly significant differences in species composition. Seepage faunas were composed of many species significantly associated with spring sites, in contrast to the assemblages of both surrounding and preserved forest sites. Our results highly support the hypothesis that calcareous forest seepages might serve as refugia and biodiversity hotspots of regional land snail faunas. Protection of these unique habitats challenges both conservation plans and forest management guidelines as they might act as sources for the recolonization and restoration of forest snail assemblages particularly in areas impoverished by harvesting and clearcutting.

Accelerated staining technique using kitchen microwave oven

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Archana Mukunda

2015-01-01

Full Text Available Introduction: Histopathological diagnosis of specimens is greatly dependent on good sample preparation and staining. Both of these processes is governed by diffusion of fluids and dyes in and out of the tissue, which is the key to staining. Diffusion of fluids can be accelerated by the application of heat that reduces the time of staining from hours to the minute. We modified an inexpensive model of kitchen microwave oven for staining. This study is an attempt to compare the reliability of this modified technique against the tested technique of routine staining so as to establish the kitchen microwave oven as a valuable diagnostic tool. Materials and Methods: Sixty different tissue blocks were used to prepare 20 pairs of slides for 4 different stains namely hematoxylin and eosin, Van Gieson′s, 0.1% toluidine blue and periodic acid-Schiff. From each tissue block, two bits of tissues were mounted on two different slides. One slide was stained routinely, and the other stained inside a microwave. A pathologist evaluated the stained slides and the results so obtained were analyzed statistically. Results: Microwave staining considerably cut down the staining time from hours to seconds. Microwave staining showed no loss of cellular and nuclear details, uniform-staining characteristics and was of excellent quality. Interpretation and Conclusion: The cellular details, nuclear details and staining characteristics of microwave stained tissues were better than or equal to the routine stained tissue. The overall quality of microwave-stained sections was found to be better than the routine stained tissue in majority of cases.

Reactivity and effectiveness of traditional and novel ligands for multi-micronutrient fertilization in a calcareous soil

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Sandra eLópez-Rayo

2015-09-01

Full Text Available This study compares the effectiveness of multi-micronutrient formulations containing Fe, Mn, and Zn with traditional (EDTA, DTPA, HEEDTA, EDDHAm or novel chelates (o,p-EDDHA, S,S-EDDS, IDHA and natural complexing agents (gluconate and lignosulfonate. The stability and reactivity of the formulations were studied on batch experiments with calcareous soil and by speciation modeling. Formulations containing traditional ligands maintained higher Mn but lower Zn concentration in soil solution than the novel ligands. The gluconate and lignosulfonate maintained low concentrations of both Mn and Zn in soil solution. Selected formulations were applied into calcareous soil and their efficacy was evaluated in a pot experiment with soybean. The formulation containing DTPA led to the highest Zn concentration in plants, as well as the formulation containing S,S-EDDS in the short-term, which correlated with its biodegradability. The application of traditional or novel ligands in formulations did not result in sufficient plant Mn concentrations, which was related to the low Mn stability observed for all formulations under moderate oxidation conditions. The results highlight the need to consider the effect of metals and ligands interactions in multi-nutrient fertilization and the potential of S,S-EDDS to be used for Zn fertilization. Furthermore, it is necessary to explore new sources of Mn fertilization for calcareous soils that have greater stability and efficiency, or instead to use foliar fertilization.

Evolution of Calcareous Deposits and Passive Film on 304 Stainless Steel with Cathodic Polarization in Sea Water

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Tianxiang Sun

2018-05-01

Full Text Available The change of protective current density, the formation and growth of calcareous deposits, and the evolution of passive film on 304 stainless steel (SS were investigated at different potentials of cathodic polarization in sea water. Potentiostatic polarization, electrochemical impedance spectroscopy (EIS, and surface analysis techniques of scanning electron microscopy (SEM, energy dispersive X-ray (EDX microanalysis and X-ray diffraction (XRD were used to characterize the surface conditions. It was found that the protective current density was smaller for keeping polarization at −0.80 V (vs. saturated calomel electrode (SCE, same as below than that at −0.65 V. The calcareous deposits could not be formed on 304 SS with polarization at −0.50 V while it was well protected. The formation rate, the morphology, and the constituent of the calcareous deposits depended on the applied potential. The resistance of passive film on 304 SS decreased at the first stage and then increased when polarized at −0.80 V and −0.65 V, which was related to the reduction and the repair of passive film. For the stainless steel polarized at −0.50 V, the film resistance increased with polarization time, indicating that the growth of oxide film was promoted.

Relationships of 137Cs inventory with magnetic measures of calcareous soils of hilly region in Iran

International Nuclear Information System (INIS)

Ayoubi, Shamsollah; Ahmadi, Mohamamd; Abdi, Mohammad Reza; Abbaszadeh Afshar, Farideh

2012-01-01

Erosion is a natural process, but it has been dramatically increased by human activities; and this adversely influences soil productivity and environmental quality. For quantification of soil erosion, several techniques including the use of Cs-137 have been employed. This study was conducted to explore the relationships of Cs-137 inventory with magnetic properties in calcareous soils in western Iran. Ten transects were selected in the hilly region in Chelgerd district of Iran. Soil samples from 0 to 30 and 30–50 cm depths were collected from fifty points to determine Cs-137 inventory, magnetic measures and selected physico-chemical properties (in total there were 100 soil samples). The results showed that simple mass balance model (SMBM) estimated a gross erosion rate of 29.6 t ha −1 yr −1 and a net soil deposition of 21.8 t ha −1 yr −1 ; hence, a net soil loss of 9.6 t ha −1 yr −1 and a sediment delivery ratio of 31.4%. Simple linear regression and non-linear regression analysis showed that mass magnetic susceptibility (χ lf ) explained only 33.64% and 45% of variability in Cs-137 in the transects studied. The results of multiple linear regression analysis of 137 Cs with magnetic parameters and physico-chemical properties indicated that extractable potassium and χ lf explained approximately 61% of the total variability in 137 Cs in the area studied. Overall, the results suggest that further research is needed for the use of magnetic characteristics as an alternative technique in place Cs-137 methodology for calcareous soils. - Highlights: ► Simple linear regression mass magnetic susceptibility (χ L ) explained only 33.64 % of Cs-137 variability. ► Non-linear regression model explained 45% of variability in Cs-137 in the transects studied. ► Magnetic Susceptibility measures could not directly be used in calcareous soils to evaluate soil redistribution. ► Magnetic characteristics as an alternative technique instead of Cs-137 in calcareous

Physical behaviour of Cretaceous calcareous nannofossil ooze

DEFF Research Database (Denmark)

Buls, Toms; Anderskouv, Kresten; Friend, Patrick L.

2017-01-01

Geomorphic features such as drifts, sediment waves and channels have been documented in the Upper Cretaceous of north-west Europe. These features are interpreted to result from bottom currents and have been used to refine chalk depositional models and quantify palaeocirculation patterns. Chalk...... was first deposited as calcareous nannofossil ooze and geomorphic features are the result of sediment reworking after deposition. There is limited knowledge on the processes that govern nannofossil ooze mobility, thus forcing uncertainty onto numerical models based on sedimentological observations...... of deposition thresholds (τcd) from ca 0·04 to 0·13 Pa reflects the influence of variable suspended sediment concentration and τ0 on settling particle size due to the identified potential for chalk ooze aggregation and flocculation. Additionally, deposition thresholds seem to be affected by the size of eroded...

Pleistocene calcareous nannofossil biochronology at IODP Site U1385 (Expedition 339)

Science.gov (United States)

Balestra, B.; Flores, J.-A.; Hodell, D. A.; Hernández-Molina, F. J.; Stow, D. A. V.

2015-12-01

During Integrated Ocean Drilling Program (IODP) Expedition 339, Site U1385 (37°34‧N, 10°7‧W, 2578 m below sea level) was drilled in the lower slope of the Portuguese margin, to provide a marine reference section of Pleistocene millennial-scale climate variability. Five holes were cored using the Advanced Piston Corer (APC) to a depth of ~ 151 m below sea floor (mbsf) recovering a continuous stratigraphic record covering the past 1.4 Ma. Here we present results of the succession of standard and unconventional calcareous nannofossil biostratigraphic events. The quantitative study of calcareous nannofossils showed well-preserved and abundant assemblages throughout the core. Most conventional Pleistocene events were recognized and the timing of bioevents were calibrated using correlation to the new oxygen isotope stratigraphy record developed for the Site U1385. The analyses provide further data on the stratigraphic distribution of selected species and genera, such as the large Emiliania huxleyi (> 4 μm), Gephyrocapsa caribbeanica, Helicosphaera inversa, Gephyrocapsa omega and Reticulofenestra asanoi (> 6 μm) and other circular-subcircular small reticulofenestrids, resulting in new insights into the environmental control of their stratigraphic patterns. Finally, the comparison between nannofossil datums and oxygen isotope stratigraphy on the same samples has resulted in an accurate revision of timing of the events, providing valuable biochronologic information.

Kinetic behavior of Fe(o,o-EDDHA)-humic substance mixtures in several soil components and in calcareous soils.

Science.gov (United States)

Cerdán, Mar; Alcañiz, Sara; Juárez, Margarita; Jordá, Juana D; Bermúdez, Dolores

2007-10-31

Ferric ethylenediamine- N, N'-bis-(o-hydroxyphenylacetic)acid chelate (Fe(o, o-EDDHA)) is one of the most effective Fe fertilizers in calcareous soils. However, humic substances are occasionally combined with iron chelates in drip irrigation systems in order to lower costs. The reactivity of iron chelate-humic substance mixtures in several soil components and in calcareous soils was investigated through interaction tests, and their behavior was compared to the application of iron chelates and humic substances separately. Two commercial humic substances and two Fe(o, o-EDDHA) chelates (one synthesized in the laboratory and one commercial) were used to prepare iron chelate-humic substance mixtures at 50% (w/w). Various soil components (calcium carbonate, gibbsite, amorphous iron oxide, hematite, tenorite, zincite, amorphous Mn oxide, and peat) and three calcareous soils were shaken for 15 days with the mixtures and with iron chelate and humic substance solutions. The kinetic behavior of Fe(o, o-EDDHA) and Fe non-(o,o-EDDHA) (Fe bonded to (o,p-EDDHA) and other polycondensated ligands) and of the different nutrients solubilized after the interaction assay was determined. The results showed that the mixtures did not significantly reduce the retention of Fe(o, o-EDDHA) and Fe non-(o,o-EDDHA) in the soil components and the calcareous soils compared to the iron chelate solutions, but they did produce changes in the retention rate. Moreover, the competition between humic substances and synthetic chelating agents for complexing metal cations limited the effectiveness of the mixtures to mobilize nutrients from the substrates. The presence of Fe(o, p-EDDHA) and other byproducts in the commercial iron chelate had an important effect on the evolution of Fe(o, o-EDDHA) and the nutrient solubilization process.

Reactivity and effectiveness of traditional and novel ligands for multi-micronutrient fertilization in a calcareous soil.

Science.gov (United States)

López-Rayo, Sandra; Nadal, Paloma; Lucena, Juan J

2015-01-01

This study compares the effectiveness of multi-micronutrient formulations containing iron (Fe), manganese (Mn), and zinc (Zn) with traditional (EDTA, DTPA, HEEDTA, and EDDHAm) or novel chelates (o,p-EDDHA, S,S-EDDS, and IDHA) and natural complexing agents (gluconate and lignosulfonate). The stability and reactivity of the formulations were studied on batch experiments with calcareous soil and by speciation modeling. Formulations containing traditional ligands maintained higher Mn but lower Zn concentration in soil solution than the novel ligands. The gluconate and lignosulfonate maintained low concentrations of both Mn and Zn in soil solution. Selected formulations were applied into calcareous soil and their efficacy was evaluated in a pot experiment with soybean. The formulation containing DTPA led to the highest Zn concentration in plants, as well as the formulation containing S,S-EDDS in the short-term, which correlated with its biodegradability. The application of traditional or novel ligands in formulations did not result in sufficient plant Mn concentrations, which was related to the low Mn stability observed for all formulations under moderate oxidation conditions. The results highlight the need to consider the effect of metals and ligands interactions in multi-nutrient fertilization and the potential of S,S-EDDS to be used for Zn fertilization. Furthermore, it is necessary to explore new sources of Mn fertilization for calcareous soils that have greater stability and efficiency, or instead to use foliar fertilization.

Reactivity and effectiveness of traditional and novel ligands for multi-micronutrient fertilization in a calcareous soil

Science.gov (United States)

López-Rayo, Sandra; Nadal, Paloma; Lucena, Juan J.

2015-01-01

This study compares the effectiveness of multi-micronutrient formulations containing iron (Fe), manganese (Mn), and zinc (Zn) with traditional (EDTA, DTPA, HEEDTA, and EDDHAm) or novel chelates (o,p-EDDHA, S,S-EDDS, and IDHA) and natural complexing agents (gluconate and lignosulfonate). The stability and reactivity of the formulations were studied on batch experiments with calcareous soil and by speciation modeling. Formulations containing traditional ligands maintained higher Mn but lower Zn concentration in soil solution than the novel ligands. The gluconate and lignosulfonate maintained low concentrations of both Mn and Zn in soil solution. Selected formulations were applied into calcareous soil and their efficacy was evaluated in a pot experiment with soybean. The formulation containing DTPA led to the highest Zn concentration in plants, as well as the formulation containing S,S-EDDS in the short-term, which correlated with its biodegradability. The application of traditional or novel ligands in formulations did not result in sufficient plant Mn concentrations, which was related to the low Mn stability observed for all formulations under moderate oxidation conditions. The results highlight the need to consider the effect of metals and ligands interactions in multi-nutrient fertilization and the potential of S,S-EDDS to be used for Zn fertilization. Furthermore, it is necessary to explore new sources of Mn fertilization for calcareous soils that have greater stability and efficiency, or instead to use foliar fertilization. PMID:26442065

Phosphorus availability due to polyphosphates additions to alfalfa plants grown on alluvial and calcareous soils using tracer techniques

International Nuclear Information System (INIS)

Ismail, A.S.; Massoud, M.A.; Shalil, K.M.E.

1985-01-01

A pot experiment was carried out to compare the effect of different sources and levels of condensed phosphates, including ring and chain structured molecules, with orthophosphate on alfalfa plants grown on alluvial and highly calcareous soils using P-32-labelled fertilizers. Data indicate that application of different sources of P-fertilizers increased both dry matter content and total-P uptake by alfalfa plants over control in both soils. The fraction of phosphorus in plants derived from added fertilizers was higher from condensed phosphates than that derived from the other sources of phosphorus. The percentages of P-fraction derived from added fertilizers (y-values) were higher in calcareous soil than those in alluvial soil

Methodology for the elaboration of Natura 2000 sites designation acts in the Walloon Region (Belgium: calcareous grasslands in the Lesse-and-Lomme area

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Mahy G.

2005-01-01

Full Text Available In the Walloon Region (Belgium, 239 sites have been selected to be included in the Natura 2000 network. The next step is to write designation acts in order to legally protect these 221,000 ha. In this pilot study, a designation act was elaborated for a Natura 2000 site of 2,569 ha and located in the Lesse-and-Lomme area within the Calestienne region. Although the site includes 40 ha of calcareous grasslands, characterised by an exceptional flora and fauna, this habitat is very threatened by abandonment and fragmentation.The methodology used to elaborate the designation act is presented with respect to calcareous grassland. Firstly, in spring and summer 2003, an accurate map of natural habitats was produced, with every single patch of calcareous grassland being mapped. Information was also collected in order to evaluate conservation status. Based on this information, conservation status was then assessed with respect to three different criteria: (1 integrity of the cortege species, (2 habitat structure and (3 degradations. Thirdly, the site was divided into objective zones according to the different habitats and species of Community interest found in the site. Hence, an objective zone was delineated for calcareous grasslands. This objective zone was then divided in several management units. Finally, at these different spatial levels (site, objective zone, management unit, management measures were suggested. As a result, in the draft designation act, the target is to maintain or restore 230 ha of calcareous grassland, instead of the existing 40 ha. This ambitious target requires large-scale restoration and an efficient grazing scheme. These will need important resources for their successful implementation

Diagnostic performance of dual-staining cytology for cervical cancer screening: A systematic literature review.

Science.gov (United States)

Tjalma, Wiebren A A

2017-03-01

Cervical cancer screening saves lives. Secondary prevention in cervical cancer screening relies on the results of primary cytology and/or HPV testing. However, primary screening with cytology has a low sensitivity, and HPV screening has a low specificity. This means that either cancers are missed, or women are over-treated. To improve performance outcomes, the concept of dual-stain cytology (CINtec ® PLUS Cytology test) has been introduced. In this approach, additional staining with p16/Ki-67 is performed in cases where cytology results are abnormal (LSIL or ASCUS) and/or HPV-positive. Another way to describe this approach might be "diagnostic" cytology. In order to assess the value of this "diagnostic cytology", a systematic literature review was conducted of dual-stain cytology performance across multiple studies until May 2016. In a Belgian screening population (women age 25-65 years), dual-stain cytology was significantly more sensitive (66%) and slightly less specific (-1.0%) than cytology. In the population referred to colposcopy or with abnormal cytology (ASCUS, LSIL), dual-staining showed a significantly higher increase in specificity, and a slightly lower sensitivity than HPV testing. Specificity gains resulted in fewer false positives and an increase in the number of correct referrals to colposcopy. Dual-staining with p16/Ki-67 cytology is an attractive biomarker approach for triage in cervical cancer screening. Copyright © 2017 Elsevier B.V. All rights reserved.

Characterization of commercial iron chelates and their behavior in an alkaline and calcareous soil.

Science.gov (United States)

Cantera, Rodrigo G; Zamarreño, Angel M; García-Mina, José M

2002-12-18

Iron deficiency is a common problem for many plants grown in alkaline and calcareous soils. To correct this problem, iron is supplied to plants as chelates. Several iron chelates are sold under diverse trademarks with different characteristics. This work evaluated 18 commercial products containing the most representative chelated iron sources used in agricultural practice in Spain when the study was done, namely the ferric chelates of EDDHA, EDDHMA, EDDCHA, EDDHSA, EDTA, and DTPA. The chelates were comprehensively characterized and quantitated by several techniques, including several chromatographic methods. Iron and chelate dynamics in soil were also studied in a model alkaline and calcareous soil. Results indicate that, in this model soil, among the different iron compounds studied only FeEDDHA and analogues have the capacity to maintain soluble iron in soil solution over time. These results are in agreement with general experience under field conditions. Furthermore, among the different ortho-ortho isomers of FeEDDHA's, FeEDDHSA and FeEDDCHA showed greater capacity than FeEDDHA and FeEDDHMA to maintain the chelated iron in soil solution over time.

Sinemurian–Pliensbachian calcareous nannofossil biostratigraphy and organic carbon isotope stratigraphy in the Paris Basin

DEFF Research Database (Denmark)

Peti, Leonie; Thibault, Nicolas Rudolph; Clemence, Marie-Emilie

2017-01-01

The biostratigraphy of Sinemurian to lower Toarcian calcareous nannofossils has been investigated in the Sancerre-Couy core (Paris Basin), which contains a mixed assemblage of species with affinities to the northern and southern areas of the peri-tethyan realm, thus allowing for the use and calib......The biostratigraphy of Sinemurian to lower Toarcian calcareous nannofossils has been investigated in the Sancerre-Couy core (Paris Basin), which contains a mixed assemblage of species with affinities to the northern and southern areas of the peri-tethyan realm, thus allowing for the use...... organic carbon isotope curve based on 385 data points. The main bioevents, i.e. the first occurrences of Parhabdolithus liasicus, Crepidolithus pliensbachensis, Crepidolithus crassus, Mitrolithus lenticularis, Similiscutum cruciulus sensu lato, Lotharingius hauffii, Crepidolithus cavus and Lotharingius...... between the different domains. In addition to the nine main bioevents used for the biozonation of the core, we document an additional 50 distinct bioevents, evaluate their reliability and discuss their potential significance by comparison to previous studies. A total of five significant negative organic...

Methods of staining and visualization of sphingolipid enriched and non-enriched plasma membrane regions of Arabidopsis thaliana with fluorescent dyes and lipid analogues

Directory of Open Access Journals (Sweden)

Blachutzik Jörg O

2012-08-01

Full Text Available Abstract Background Sterols and Sphingolipids form lipid clusters in the plasma membranes of cell types throughout the animal and plant kingdoms. These lipid domains provide a medium for protein signaling complexes at the plasma membrane and are also observed to be principal regions of membrane contact at the inception of infection. We visualized different specific fluorescent lipophilic stains of the both sphingolipid enriched and non-sphingolipid enriched regions in the plasma membranes of live protoplasts of Arabidopsis thaliana. Results Lipid staining protocols for several fluorescent lipid analogues in plants are presented. The most emphasis was placed on successful protocols for the single and dual staining of sphingolipid enriched regions and exclusion of sphingolipid enriched regions on the plasma membrane of Arabidopsis thaliana protoplasts. A secondary focus was placed to ensure that these staining protocols presented still maintain cell viability. Furthermore, the protocols were successfully tested with the spectrally sensitive dye Laurdan. Conclusion Almost all existing staining procedures of the plasma membrane with fluorescent lipid analogues are specified for animal cells and tissues. In order to develop lipid staining protocols for plants, procedures were established with critical steps for the plasma membrane staining of Arabidopsis leaf tissue and protoplasts. The success of the plasma membrane staining protocols was additionally verified by measurements of lipid dynamics by the fluorescence recovery after photobleaching technique and by the observation of new phenomena such as time dependent lipid polarization events in living protoplasts, for which a putative physiological relevance is suggested.

Geochemistry of calcareous sediments from the SW Carlsberg Ridge: Evidence for deeper carbonate compensation depth

Digital Repository Service at National Institute of Oceanography (India)

Valsangkar, A.B.; Ambre, N.V.

Concentration of Mn, Fe, Ni, Co, Zn, Ca, Mg, K, Al, Si, Ti, P and CaCO sub(3) show wide range for the calcareous sediments from SW Carlsberg Ridge (CR). Compared with the average pelagic clays, the CR sediments are enriched by Mg, Ni, Co, and Zn...

Coniacian-maastrichtian calcareous nannofossil biostratigraphy and carbon-isotope stratigraphy in the Zagros Basin (Iran)

DEFF Research Database (Denmark)

Razmjooei, Mohammad Javad; Thibault, Nicolas; Kani, Anoshiravan

2014-01-01

, White Fall, Kingsdown, Michel Dean, Haven Brow, Horseshoe Bay, Buckle, Hawks Brow, Santonian/Campanian boundary (SCBE) and Campanian/Maastrichtian boundary (CMBE) events. Correlation to a recently proposed global δ13C stack for the Late Cretaceous points to a major mismatch of this compilation...... and calcareous nannofossil bio-horizons, and (2) their correlation between the Tethyan and Boreal realms....

Biochar and manure affect calcareous soil and corn silage nutrient concentrations and uptake.

Science.gov (United States)

Lentz, R D; Ippolito, J A

2012-01-01

Carbon-rich biochar derived from the pyrolysis of biomass can sequester atmospheric CO, mitigate climate change, and potentially increase crop productivity. However, research is needed to confirm the suitability and sustainability of biochar application to different soils. To an irrigated calcareous soil, we applied stockpiled dairy manure (42 Mg ha dry wt) and hardwood-derived biochar (22.4 Mg ha), singly and in combination with manure, along with a control, yielding four treatments. Nitrogen fertilizer was applied when needed (based on preseason soil test N and crop requirements) in all plots and years, with N mineralized from added manure included in this determination. Available soil nutrients (NH-N; NO-N; Olsen P; and diethylenetriaminepentaacetic acid-extractable K, Mg, Na, Cu, Mn, Zn, and Fe), total C (TC), total N (TN), total organic C (TOC), and pH were evaluated annually, and silage corn nutrient concentration, yield, and uptake were measured over two growing seasons. Biochar treatment resulted in a 1.5-fold increase in available soil Mn and a 1.4-fold increase in TC and TOC, whereas manure produced a 1.2- to 1.7-fold increase in available nutrients (except Fe), compared with controls. In 2009 biochar increased corn silage B concentration but produced no yield increase; in 2010 biochar decreased corn silage TN (33%), S (7%) concentrations, and yield (36%) relative to controls. Manure produced a 1.3-fold increase in corn silage Cu, Mn, S, Mg, K, and TN concentrations and yield compared with the control in 2010. The combined biochar-manure effects were not synergistic except in the case of available soil Mn. In these calcareous soils, biochar did not alter pH or availability of P and cations, as is typically observed for acidic soils. If the second year results are representative, they suggest that biochar applications to calcareous soils may lead to reduced N availability, requiring additional soil N inputs to maintain yield targets. Copyright © by the

EARLY TO LATE OLIGOCENE CALCAREOUS NANNOFOSSIL BIOEVENTS IN THE MEDITERRANEAN (UMBRIA-MARCHE BASIN, CENTRAL ITALY

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PATRIZIA MAIORANO

2006-07-01

Full Text Available Calcareous nannofossil assemblages have been investigated by means of quantitative analyses in three Oligocene pelagic sections located in the Umbria-Marche Apennines (Central Italy. The studied sections mainly consist of marly limestones and marls belonging to the Scaglia Cinerea Formation, and include the interval between NP23 and NP25 representing a time interval of about 3.5 Ma. Biostratigraphic resolution is extremely low and only two standard bioevents are known, which are the FO of Sphenolithus ciperoensis and the LO of Sphenolithus distentus. The distribution patterns of poorly known or recently described calcareous nannofossils provided a valuable tool for improving the current biostratigraphic framework. The studied interval is characterized by significant changes in the calcareous nannofossil assemblages and by several extinction events. The last occurrence (LO and/or the last common occurrence (LCO here proposed are: the LO of Sphenolithus akropodus, the LO of Reticulofenestra circus, the LCO of Helicosphaera ethologa, the LCO of Helicosphaera compactathe LO of Discoaster tanii nodifer. The reversal in abundance between Sphenolithus predistentus and S. distentus provided an additional biostratigraphic constraint at the NP23-NP24 transition. In addition biometric criteria enabled the recognition of the first common occurrence (FCO of Cyclicargolithus abisectus > 12 mm as potential bioevent within NP24. The quantitative distribution of Sphenolithus distentus suggests to rely on the LCO of the species rather than on the LO, for the identification of NP24-NP25 boundary. The identified bioevents is a first step towards the improvement of the present Mediterranean biostratigraphic framework of the Oligocene geological record. A preliminary correlation of the bioevents to the Geomagnetic Polarity Time Scale is presented.

Ophiolitic detritus in Kimmeridgian resedimented limestones and its provenance from an eroded obducted ophiolitic nappe stack south of the Northern Calcareous Alps (Austria

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Gawlick Hans-Jürgen

2015-12-01

Full Text Available The causes for the Middle to Late Jurassic tectonic processes in the Northern Calcareous Alps are still controversially discussed. There are several contrasting models for these processes, formerly designated “Jurassic gravitational tectonics”. Whereas in the Dinarides or the Western Carpathians Jurassic ophiolite obduction and a Jurassic mountain building process with nappe thrusting is widely accepted, equivalent processes are still questioned for the Eastern Alps. For the Northern Calcareous Alps, an Early Cretaceous nappe thrusting process is widely favoured instead of a Jurassic one, obviously all other Jurassic features are nearly identical in the Northern Calcareous Alps, the Western Carpathians and the Dinarides. In contrast, the Jurassic basin evolutionary processes, as best documented in the Northern Calcareous Alps, were in recent times adopted to explain the Jurassic tectonic processes in the Carpathians and Dinarides. Whereas in the Western Carpathians Neotethys oceanic material is incorporated in the mélanges and in the Dinarides huge ophiolite nappes are preserved above the Jurassic basin fills and mélanges, Jurassic ophiolites or ophiolitic remains are not clearly documented in the Northern Calcareous Alps. Here we present chrome spinel analyses of ophiolitic detritic material from Kimmeridgian allodapic limestones in the central Northern Calcareous Alps. The Kimmeridgian age is proven by the occurrence of the benthic foraminifera Protopeneroplis striata and Labyrinthina mirabilis, the dasycladalean algae Salpingoporella pygmea, and the alga incertae sedis Pseudolithocodium carpathicum. From the geochemical composition the analysed spinels are pleonastes and show a dominance of Al-chromites (Fe3+–Cr3+–Al3+ diagram. In the Mg/(Mg+ Fe2+ vs. Cr/(Cr+ Al diagram they can be classified as type II ophiolites and in the TiO2 vs. Al2O3 diagram they plot into the SSZ peridotite field. All together this points to a harzburgite

Production of Calcareous Nannofossil Ooze for Sedimentological Experiments

DEFF Research Database (Denmark)

Buls, Toms; Anderskouv, Kresten; Fabricius, Ida Lykke

2015-01-01

by an abundance of sedimentary structures, such as drifts, moats, sediment waves, and channels documented in the Upper Cretaceous Chalk Group of NW Europe. Despite chalk being a major hydrocarbon reservoir rock of the North Sea, surprisingly little is known about the physical behavior of the pelagic carbonate......The notion of fine-grained pelagic carbonates as uniform, monotonous sequences of sediments settled in a quiescent environment has been challenged over the past few decades. Fine-grained pelagic carbonates can undergo substantial reworking after their first deposition, as illustrated...... sediment from which the chalk formed-calcareous nannofossil ooze. This poses a serious challenge to the understanding of the depositional system and the properties of facies distribution. Experimental tests, such as those performed in laboratory flumes, are necessary to provide empirical data...

Paleocene calcareous nannofossils biostratigraphy from the Sergipe Sub-basin, northeastern Brazil: Implications for this depositional environment

Science.gov (United States)

Andrade Oliveira, Geize Carolinne Correia; de Oliveira, Rick Souza; Monte Guerra, Rodrigo; de Lima Filho, Mario Ferreira

2018-03-01

This study reports on the biostratigraphy of Paleocene calcareous nannofossils and paleoenvironmental inferences based on five wells drilled on the offshore portion of the Sergipe Sub-basin. Five biostratigraphic zones were defined for the Paleocene in zones of Brazilian continental margin basins N-305, N-307, N-330, N-340 and N-350, and four hiatuses were identified based on the absence of marker species. These hiatuses were interpreted as excavations originated by turbulent to hyperpycnal flows, revealing an important application of biostratigraphy to better understand depositional environments that are often limited by little variation in lithology or low variation in the well log patterns. In Paleoecological terms, the Sergipe Sub-basin, in the Paleocene, experienced geological and environmental events similar to those of other sedimentary basins on the eastern passive continental margin of Brazil, but has a more complete biostratigraphic record of calcareous nannofossils.

Ca (OH)2Nanoparticles Based on Acrylic Copolymers for the consolidation and protection of Ancient Egypt Calcareous Stone Monuments

Science.gov (United States)

Al-Dosari, Mohammad A.; Darwish, Sawsan S.; Adam, Mahmoud A.; Elmarzugi, Nagib A.; Al-Mouallimi, Nadia; Ahmed, Sayed M.

2017-04-01

The deterioration of calcareous stones materials used in artistic/architectural field is one of the most serious problems facing conservation today. The aim of this study was to evaluate the effectiveness of nanosized particles of calcium hydroxide (slaked lime) as a consolidation and protection material dispersed in acrylic copolymer, poly ethylmethacrylate/methylacrylate (70:30) (Poly (EMA/MA), for calcareous stone monuments and painted surfaces affected by different kinds of decay. The synthesis process of Ca (OH)2 nanoparticles/polymer nanocomposites have been prepared by in situ emulsion polymerization system. The prepared nanocomposite containing 5% of Ca (OH)2 nanoparticles showed obvious transparency features and represent nanocomposites coating technology with hydrophobic, consolidating and well protection properties.

Ca (OH)2Nanoparticles Based on Acrylic Copolymers for the consolidation and protection of Ancient Egypt Calcareous Stone Monuments

International Nuclear Information System (INIS)

Al-Dosari, Mohammad A.; Ahmed, Sayed M.; Darwish, Sawsan S.; Adam, Mahmoud A.; Elmarzugi, Nagib A.; Al-Mouallimi, Nadia

2017-01-01

The deterioration of calcareous stones materials used in artistic/architectural field is one of the most serious problems facing conservation today. The aim of this study was to evaluate the effectiveness of nanosized particles of calcium hydroxide (slaked lime) as a consolidation and protection material dispersed in acrylic copolymer, poly ethylmethacrylate/methylacrylate (70:30) (Poly (EMA/MA), for calcareous stone monuments and painted surfaces affected by different kinds of decay. The synthesis process of Ca (OH) 2 nanoparticles/polymer nanocomposites have been prepared by in situ emulsion polymerization system. The prepared nanocomposite containing 5% of Ca (OH) 2 nanoparticles showed obvious transparency features and represent nanocomposites coating technology with hydrophobic, consolidating and well protection properties. (paper)

Iron Stain on Wood

Science.gov (United States)

Mark Knaebe

2013-01-01

Iron stain, an unsightly blue–black or gray discoloration, can occur on nearly all woods. Oak, redwood, cypress, and cedar are particularly prone to iron stain because these woods contain large amounts of tannin-like extractives. The discoloration is caused by a chemical reaction between extractives in the wood and iron in steel products, such as nails, screws, and...

EDTA and HCl leaching of calcareous and acidic soils polluted with potentially toxic metals: remediation efficiency and soil impact.

Science.gov (United States)

Udovic, Metka; Lestan, Domen

2012-07-01

The environmental risk of potentially toxic metals (PTMs) in soil can be diminished by their removal. Among the available remediation techniques, soil leaching with various solutions is one of the most effective but data about the impact on soil chemical and biological properties are still scarce. We studied the effect of two common leaching agents, hydrochloric acid (HCl) and a chelating agent (EDTA) on Pb, Zn, Cd removal and accessibility and on physico-chemical and biological properties in one calcareous, pH neutral soil and one non-calcareous acidic soil. EDTA was a more efficient leachant compared to HCl: up to 133-times lower chelant concentration was needed for the same percentage (35%) of Pb removal. EDTA and HCl concentrations with similar PTM removal efficiency decreased PTM accessibility in both soils but had different impacts on soil properties. As expected, HCl significantly dissolved carbonates from calcareous soil, while EDTA leaching increased the pH of the acidic soil. Enzyme activity assays showed that leaching with HCl had a distinctly negative impact on soil microbial and enzyme activity, while leaching with EDTA had less impact. Our results emphasize the importance of considering the ecological impact of remediation processes on soil in addition to the capacity for PTM removal. Copyright © 2012 Elsevier Ltd. All rights reserved.

Effect of Arbuscular Mycorrhizae on zinc nutrition of maize grow in calcareous soil amended with different phosphorus sources

International Nuclear Information System (INIS)

Aly, S.S.M.; EL-Ghandour, I. A.

2001-01-01

Arbuscular mycorrhizal fungi (AMF) are known to improve P nutrition of plants. The information of AMF effects on corn Zn nutrition under P fertilization in calcareous soil is limited. A greenhouse experiment was carried out using calcareous soil and two P-sources i.e single superphosphate and rock phosphate (with full and one third of recommended dose). to evaluate the ability of AMF on improving Zn nutrition in maize plants. Labelled 65 ZnSo 4 was added at rates of 0.10 and 20 mg Zn Kg -1 soil. Zinc uptake and dry mater of corn shoots were improved as a result of AMF inoculation. The maximum improvement was recorded with super-P fertilizer in combination with 10 or 20 mg Zn Kg -1 soil for non-inoculated and AMF inoculated plants. respectively. The amount of Zn in non-inoculated and AMF inoculated plants. respectively. The amount of ZnSo 4 utilized plant derived from fertilizer.(Zndff) and the percent of ZnSo 4 utilization by corn plants were increased when ZnSo 4 was added at rate of 10 mg Zn Kg -1 soil in the presence of super-P fertilizer. Inoculated plants with AMF had higher Zndff content and U% than non-inoculated ones and the greater Zndff and superphosphate fertilizer. It could be concluded that. AMF is useful method utilization by corn plants grown in calcareous soil

Demonstration of lipofuscin and Nissl bodies in crystal violet stained sections using a fluorescence technique or pyronin Y stain.

Science.gov (United States)

Terr, L I

1986-09-01

This paper presents two simple, reliable methods for identification of lipofuscin and Nissl bodies in the same section. One method shows that lipofuscin stained with crystal violet retains its ability to fluoresce and can be observed under the fluorescence microscope after the stain has faded. Fading is accompanied by a gradual increase in the intensity of the fluorescence and is complete in about 5 min. Exciting illumination from this part of the spectrum also substantially fades staining of other autofluorescing tissue elements, such as lipids. Nonfluorescing structures, such as Nissl bodies, remain stained. By changing from transillumination with tungsten light to epifluorescent illumination and vice versa, both types of structures--Nissl bodies and lipofuscin--can be identified in the same section. The second technique uses pyronin Y for staining Nissl bodies in preparations previously stained with crystal violet. Nissl bodies are stained pink but lipofuscin remains violet. Lipofuscin in these sections also remains autofluorescent after the crystal violet stain has faded under violet or near-UV light.

Histological Stains: A Literature Review and Case Study.

Science.gov (United States)

Alturkistani, Hani A; Tashkandi, Faris M; Mohammedsaleh, Zuhair M

2015-06-25

The history of histology indicates that there have been significant changes in the techniques used for histological staining through chemical, molecular biology assays and immunological techniques, collectively referred to as histochemistry. Early histologists used the readily available chemicals to prepare tissues for microscopic studies; these laboratory chemicals were potassium dichromate, alcohol and the mercuric chloride to harden cellular tissues. Staining techniques used were carmine, silver nitrate, Giemsa, Trichrome Stains, Gram Stain and Hematoxylin among others. The purpose of this research was to assess past and current literature reviews, as well as case studies, with the aim of informing ways in which histological stains have been improved in the modern age. Results from the literature review has indicated that there has been an improvement in histopathology and histotechnology in stains used. There has been a rising need for efficient, accurate and less complex staining procedures. Many stain procedures are still in use today, and many others have been replaced with new immunostaining, molecular, non-culture and other advanced staining techniques. Some staining methods have been abandoned because the chemicals required have been medically proven to be toxic. The case studies indicated that in modern histology a combination of different stain techniques are used to enhance the effectiveness of the staining process. Currently, improved histological stains, have been modified and combined with other stains to improve their effectiveness.

PRIMARY CEMENTED BIPOLAR HEMIARTHROPLASTY WITH TROCHANTERIC AND CALCAR RECONSTRUCTION IN UNSTABLE INTERTROCHANTERIC FRACTURES IN ELDERLY: A PROSPECTIVE STUDY

Directory of Open Access Journals (Sweden)

Pandu Ranga Vital

2015-09-01

Full Text Available INTRODUCTION : To avoid the complications and morbidity associated with attempted Osteosynthesis of the so called Unstable inter - trochanteric fractures in the elderly population, Primary Cemented Bipolar hemiarthroplasty been around for over three decades now. But, hardly any emphasis been given over the technical aspects to i mprove the functional outcome. Present study is one such, following reconstructive attempts ( O f primary cemented bipolar hemiarthroplasty with trochanter and calcar reconstruction in the elderly population to reduce the risk of unstable Hemiarthroplasty. MATERIALS AND METHODS: This prospective study included 20 cases of elderly patients with mean age of 73.5 years (Age range 66 to 82 yr who sustained multifragmentary/communited inter - trochanteric femur fracture treated with Primary cemented bipolar hemiar throplasty with trochanteric and calcar reconstruction to emphasize the importance of restoration soft tissue tension to reduce the risk of unstable Hemiarthroplasty. Essential Technical steps include Figure of eight / multiple wire loop technique of recons truction ( with or without K ‘wires of greater trochanter/ abductor mechanism and calcar reconstruction either by wiring Lesser trochanteric fragment and or insertion of cortical piece of bone graft (medially under the collar of the prosthesis harvested f rom head and neck fragment. The patients were followed up at six week, three month, six month and one year postoperatively and assessed using Harris Hip Score (HHS. RESULTS: The mean HHS score was 85 (range 69 to 91 at the end of one year. The main clini cal measures were early post - operative full weight bearing, post - operative complication & functional outcome. The time to full weight bearing, the rate of post - operative complications & functional outcome was significantly better in cemented bipolar arthro plasty group. CONCLUSION: The authors strongly believe that primary cemented bipolar

Nitrogen deposition and grass encroachment in calcareous and acidic Grey dunes (H2130) in NW-Europe

NARCIS (Netherlands)

Kooijman, A.M.; van Til, M.; Noordijk, E.; Remke, E.; Kalbitz, K.

We present an overview of high nitrogen deposition effects on coastal dune grasslands in NW-Europe (H2130), especially concerning grass encroachment in calcareous and acidic Grey Dunes. The problem is larger than previously assumed, because critical loads are still too high, and extra N-input from

Field Evidence of Cadmium Phytoavailability Decreased Effectively by Rape Straw and/or Red Mud with Zinc Sulphate in a Cd-Contaminated Calcareous Soil

Science.gov (United States)

Li, Bo; Yang, Junxing; Wei, Dongpu; Chen, Shibao; Li, Jumei; Ma, Yibing

2014-01-01

To reduce Cd phytoavailability in calcareous soils, the effects of soil amendments of red mud, rape straw, and corn straw in combination with zinc fertilization on Cd extractability and phytoavailability to spinach, tomato, Chinese cabbage and radish were investigated in a calcareous soil with added Cd at 1.5 mg kg−1. The results showed that water soluble and exchangeable Cd in soils was significantly decreased by the amendments themselves from 26% to 70%, which resulted in marked decrease by approximately from 34% to 77% in Cd concentration in vegetables. The amendments plus Zn fertilization further decreased the Cd concentration in vegetables. Also cruciferous rape straw was more effective than gramineous corn straw. In all treatments, rape straw plus red mud combined with Zn fertilization was most effective in decreasing Cd phytoavailability in soils, and it is potential to be an efficient and cost-effective measure to ensure food safety for vegetable production in mildly Cd-contaminated calcareous soils. PMID:25303439

Field evidence of cadmium phytoavailability decreased effectively by rape straw and/or red mud with zinc sulphate in a Cd-contaminated calcareous soil.

Directory of Open Access Journals (Sweden)

Bo Li

Full Text Available To reduce Cd phytoavailability in calcareous soils, the effects of soil amendments of red mud, rape straw, and corn straw in combination with zinc fertilization on Cd extractability and phytoavailability to spinach, tomato, Chinese cabbage and radish were investigated in a calcareous soil with added Cd at 1.5 mg kg-1. The results showed that water soluble and exchangeable Cd in soils was significantly decreased by the amendments themselves from 26% to 70%, which resulted in marked decrease by approximately from 34% to 77% in Cd concentration in vegetables. The amendments plus Zn fertilization further decreased the Cd concentration in vegetables. Also cruciferous rape straw was more effective than gramineous corn straw. In all treatments, rape straw plus red mud combined with Zn fertilization was most effective in decreasing Cd phytoavailability in soils, and it is potential to be an efficient and cost-effective measure to ensure food safety for vegetable production in mildly Cd-contaminated calcareous soils.

Centrifuge-operated specimen staining method and apparatus

Science.gov (United States)

Clarke, Mark S. F. (Inventor); Feeback, Daniel L. (Inventor)

1999-01-01

A method of staining preselected, mounted specimens of either biological or nonbiological material enclosed within a staining chamber where the liquid staining reagents are applied and removed from the staining chamber using hypergravity as the propelling force. In the preferred embodiment, a spacecraft-operated centrifuge and method of diagnosing biological specimens while in orbit, characterized by hermetically sealing a shell assembly. The assembly contains slide stain apparatus with computer control therefor, the operative effect of which is to overcome microgravity, for example on board an International Space Station.

The siliceous-calcareous-argillaceous rock type uranium deposit in south subzone of Western Qinling

International Nuclear Information System (INIS)

Qian Farong; Zhou Dean; Ji Hongfang

1995-11-01

The siliceous-calcareous-argillaceous rock type uranium deposit in south subzone of western Qinling is an inland found type deposit with specific mineralization and good potentiality. The mineralization distributes along definite horizons and occurs in siliceous layer and lenses of siliceous-calcareous rocks. Orebody presents in forms of stratoid, lenticular and irregular veins and controlled by factorial structures. Ore is identified as massive and sandy and each characterized by various mineral compositions and element associations. The study shows that the mineralizing materials are mainly derived from ore-bearing strata. The metallogenic environment has characteristics of middle-low temperature and supergene The metallogenesis underwent three stages: (1) Sedimentation-diagenesis of the ore-bearing strata led to preliminary concentration of uranium; (2) Polytectonic activities accompanied by underground hydrothermal process resulted in the industrial concentration of uranium; and (3) Orebody reworked by oxidation-denudation and leaching, locally has taken place secondary concentration. The deposit in origin attributes to polygenesis dominated by underground hydrothermal metallogenesis. Main metallogenic epoch happens during the periods of Late Yanshan and Himalayan. According to the geological-tectonic conditions the further prospecting direction in study area is proposed. (3 refs., 5 figs., 9 tabs.)

Determination of Complement-Mediated Killing of Bacteria by Viability Staining and Bioluminescence

OpenAIRE

Virta, Marko; Lineri, Sanna; Kankaanpää, Pasi; Karp, Matti; Peltonen, Karita; Nuutila, Jari; Lilius, Esa-Matti

1998-01-01

Complement-mediated killing of bacteria was monitored by flow cytometric, luminometric, and conventional plate counting methods. A flow cytometric determination of bacterial viability was carried out by using dual staining with a LIVE/DEAD BacLight bacterial viability kit. In addition to the viable cell population, several other populations emerged in the fluorescence histogram, and there was a dramatic decrease in the total cell count in the light-scattering histogram in the course of the co...

Selection and application of exterior stains for wood

Science.gov (United States)

R. Sam. Williams; William C. Feist

1999-01-01

Exterior stains for wood protect the wood surface from sunlight and moisture. Because stains are formulated to penetrate the wood surface, they are not prone to crack or peel as can film-forming finishes, such as paints. This publication describes the properties of stains and wood, methods for applying stains, and the expected service life of stains.

Ultrastructural characters of a Physarum melleum on living leaves of Dendrobium candidum in China*

Science.gov (United States)

Zhang, Jing-ze; Liu, Lu-ning; Fiore-Donno, Anna-Maria; Xu, Tong

2007-01-01

A known species, Physarum melleum, was found fruiting on living leaves of Dendrobium candidum, which was collected in China in 2004. Its morphological characters were revealed by light microscopy (LM), environmental scanning electron microscopy (ESEM) and scanning electron microscopy (SEM). Character variations were distinguished by its olive-yellow peridium and its always thinner capillitium containing globulose granular material between the large calcareous nodes. The calcium carbonate granules, deposited on stalks, peridium and hypothallus as well as within stalks, were globose and smooth. PMID:18257124

Differential staining of bacteria: acid fast stain.

Science.gov (United States)

Reynolds, Jackie; Moyes, Rita B; Breakwell, Donald P

2009-11-01

Acid-fastness is an uncommon characteristic shared by the genera Mycobacterium (Section 10A) and Nocardia. Because of this feature, this stain is extremely helpful in identification of these bacteria. Although Gram positive, acid-fast bacteria do not take the crystal violet into the wall well, appearing very light purple rather than the deep purple of normal Gram-positive bacteria. (c) 2009 by John Wiley & Sons, Inc.

The comparison of pyrosequencing molecular Gram stain, culture, and conventional Gram stain for diagnosing orthopaedic infections.

Science.gov (United States)

Kobayashi, Naomi; Bauer, Thomas W; Tuohy, Marion J; Lieberman, Isador H; Krebs, Viktor; Togawa, Daisuke; Fujishiro, Takaaki; Procop, Gary W

2006-08-01

We have developed a combined real-time PCR and pyrosequencing assay that successfully differentiated the vast majority of gram-positive and gram-negative bacteria when bacterial isolates were tested. The purpose of this study was to evaluate this assay on clinical specimens obtained from orthopedic surgeries, and to prospectively compare the results of "molecular Gram stain" with culture and conventional direct Gram stain. Forty-five surgical specimens were obtained from patients who underwent orthopedic surgery procedures. The DNA was extracted and a set of broad-range PCR primers that targeted a part of the 16S rDNA gene was used for pan-bacterial PCR. The amplicons were submitted for pyrosequencing and the resulting molecular Gram stain characteristics were recorded. Culture and direct Gram staining were performed using standard methods for all cases. Surgical specimens were reviewed histologically for all cases that had a discrepancy between culture and molecular results. There was an 86.7% (39/45) agreement between the traditional and molecular methods. In 12/14 (85.7%) culture-proven cases of bacterial infection, molecular Gram stain characteristics were in agreement with the culture results, while the conventional Gram stain result was in agreement only for five cases (35.7%). In the 31 culture negative cases, 27 cases were also PCR negative, whereas 4 were PCR positive. Three of these were characterized as gram negative and one as gram positive by this molecular method. Molecular determination of the Gram stain characteristics of bacteria that cause orthopedic infections may be achieved, in most instances, by this method. Further studies are necessary to understand the clinical importance of PCR-positive/culture-negative results.

Efficacy of Fe(o,o-EDDHA) and Fe(o,p-EDDHA) isomers in supplying Fe to strategy I plants differs in nutrient solution and calcareous soil.

Science.gov (United States)

Rojas, Carmen L; Romera, Francisco J; Alcántara, Esteban; Pérez-Vicente, Rafael; Sariego, Cristina; Garcaí-Alonso, J Ignacio; Boned, Javier; Marti, Gabriel

2008-11-26

The FeEDDHA [iron(3+) ethylenediamine di(o-hydroxyphenylacetic) acid] is one of the most efficient iron chelates employed in the correction of iron clorosis in calcareous soils. FeEDDHA presents different positional isomers: the ortho-ortho (o,o), the ortho-para (o,p), and the para-para (p,p). Of these isomers, the p,p cannot chelate Fe in soil solution in a wide range of pH values, while both o,o and o,p can. The objective of this work was to compare the efficiency of both isomers (o,o and o,p) to provide Fe to two Strategy I plants (tomato and peach) in nutrient solution (pH approximately 6.0), as well as in calcareous soil (pH approximately 8.4; CALCIXEREPT). For this, chelates of both o,o-EDDHA and o,p-EDDHA with 57Fe (a nonradioactive isotope of Fe) were used, where the 57Fe acts as a tracer. The results obtained showed that the o,o isomer is capable of providing sufficient Fe to plants in both nutrient solution and calcareous soil. However, the o,p isomer is capable of providing sufficient Fe to plants in nutrient solution but not in calcareous soil.

Palaeoenvironmental changes in the Late Triassic (Rhaetian) of the Northern Calcareous Alps

DEFF Research Database (Denmark)

Mette, Wolfgang; Elsler, Armin; Korte, Christoph

2012-01-01

in the Kössen Formation and determine their significance for environmental and climatic conditions in the Rhaetian sea of the Eiberg Basin (Northern Calcareous Alps). For this purpose 60 δ 18O measurements on 43 articulate brachiopods samples from 8 different horizons were carried out. The results indicate...... to the lowest unit 3 of the Eiberg Member that parallels oxygen isotopes. This positive δ 13C trend is interrupted by a sudden ~1.5‰ negative excursion in the late Rhaetian (Late Rhaetian Event), a time span when the oxygen isotopes remain heavy....

Phytoextraction potential of poplar (Populus alba L. var. pyramidalis Bunge) from calcareous agricultural soils contaminated by cadmium.

Science.gov (United States)

Hu, Yahu; Nan, Zhongren; Jin, Cheng; Wang, Ning; Luo, Huanzhang

2014-01-01

To investigate the phytoextraction potential of Populus alba L. var. pyramidalis Bunge for cadmium (Cd) contaminated calcareous soils, a concentration gradient experiment and a field sampling experiment (involving poplars of different ages) were conducted. The translocation factors for all experiments and treatments were greater than 1. The bioconcentration factor decreased from 2.37 to 0.25 with increasing soil Cd concentration in the concentration gradient experiment and generally decreased with stand age under field conditions. The Cd concentrations in P. pyramidalis organs decreased in the order of leaves > stems > roots. The shoot biomass production in the concentration gradient experiment was not significantly reduced with soil Cd concentrations up to or slightly over 50 mg kg(-1). The results show that the phytoextraction efficiency of P. pyramidalis depends on both the soil Cd concentration and the tree age. Populus pyramidalis is most suitable for remediation of slightly Cd contaminated calcareous soils through the combined harvest of stems and leaves under actual field conditions.

A preliminary spatial-temporal study of some soil characteristics in the calcareous massif of Sicó, Portugal.

Science.gov (United States)

Torres, Maria Odete; Neves, Maria Manuela

2016-04-18

The mountainous massif of Sicó, in the centre of Portugal, is an extensive area composed of calcareous Jurassic formations. Hillside calcareous soils, with high pH, present chemical restrictions to support plant growth and are subjected to important erosion processes leading to their degradation if not protected by vegetation. In a first year of study some soil physicochemical characteristics have been measured in some geo-referenced locations of a larger design experiment and an exploratory spatial analysis has been performed. The objective of this study was to present some suggestions in order to give sustainable phosphorus fertiliser recommendations aiming to establish pastures in these soils and thus support traditional livestock activity. Ten years apart, those soil characteristics have been measured again in the same locations and comparisions have been made. The objective was to understand the variability of the soil properties under study in order to better adequate the fertiliser soil management regarding the area restoration.

Say goodbye to coffee stains

NARCIS (Netherlands)

Eral, Burak; van den Ende, Henricus T.M.; Mugele, Friedrich Gunther

2012-01-01

Discussing ideas over a mug of coffee or tea is the lifeblood of science, but have you ever thought about the stains that can be inadvertently left behind? H Burak Eral, Dirk van den Ende and Frieder Mugele explain how these stains, which can be a major annoyance in some biology techniques, can be

Diagnosing periprosthetic infection: false-positive intraoperative Gram stains.

Science.gov (United States)

Oethinger, Margret; Warner, Debra K; Schindler, Susan A; Kobayashi, Hideo; Bauer, Thomas W

2011-04-01

Intraoperative Gram stains have a reported low sensitivity but high specificity when used to help diagnose periprosthetic infections. In early 2008, we recognized an unexpectedly high frequency of apparent false-positive Gram stains from revision arthroplasties. The purpose of this report is to describe the cause of these false-positive test results. We calculated the sensitivity and specificity of all intraoperative Gram stains submitted from revision arthroplasty cases during a 3-month interval using microbiologic cultures of the same samples as the gold standard. Methods of specimen harvesting, handling, transport, distribution, specimen processing including tissue grinding/macerating, Gram staining, and interpretation were studied. After a test modification, results of specimens were prospectively collected for a second 3-month interval, and the sensitivity and specificity of intraoperative Gram stains were calculated. The retrospective review of 269 Gram stains submitted from revision arthroplasties indicated historic sensitivity and specificity values of 23% and 92%, respectively. Systematic analysis of all steps of the procedure identified Gram-stained but nonviable bacteria in commercial broth reagents used as diluents for maceration of periprosthetic membranes before Gram staining and culture. Polymerase chain reaction and sequencing showed mixed bacterial DNA. Evaluation of 390 specimens after initiating standardized Millipore filtering of diluent fluid revealed a reduced number of positive Gram stains, yielding 9% sensitivity and 99% specificity. Clusters of false-positive Gram stains have been reported in other clinical conditions. They are apparently rare related to diagnosing periprosthetic infections but have severe consequences if used to guide treatment. Even occasional false-positive Gram stains should prompt review of laboratory methods. Our observations implicate dead bacteria in microbiologic reagents as potential sources of false-positive Gram

Histopathological evaluation of ocular microsporidiosis by different stains

Directory of Open Access Journals (Sweden)

Sharma Savitri

2006-06-01

Full Text Available Abstract Background There is limited data on comparing stains in the detection of microsporidia in corneal biopsies. Hence we wanted to evaluate various stains for their ability to detect microsporidia in corneal tissue sections. Methods Four cases diagnosed with microsporidiosis on Hematoxylin and Eosin and Periodic Acid Schiff's stained sections of the corneal button between January 2002 and December 2004, were included. Further sections were prospectively stained with calcofluor white, Gram, Giemsa, Masson's trichrome, acridine orange, Gomori's methenamine silver, Gram's chromotrope and modified acid fast stain. The stained sections were analyzed for the spore characteristics in terms of size, shape, color contrast, cell wall morphology, waist band in cytoplasm and ease of detection. Results All sections showed microsporidial spores as 3 – 5 μm, oval bodies. 1% acid fast, Gram's chromotrope and GMS stains provided a reliable diagnosis of microsporidia as diagnostic waist band could be identified and good contrast helped distinguish the spores from inflammatory debris. Conclusion Considering the ease of performance, cost effectiveness and rapidity of the technique, 1% acid fast stain and Gram's chromotrope stain are ideal for the detection of microsporidia.

The effects of α-cellulose extraction and blue-stain fungus on retrospective studies of carbon and oxygen isotope variation in live and dead trees.

Science.gov (United States)

English, Nathan B; McDowell, Nate G; Allen, Craig D; Mora, Claudia

2011-10-30

Tree-ring carbon and oxygen isotope ratios from live and recently dead trees may reveal important mechanisms of tree mortality. However, wood decay in dead trees may alter the δ(13)C and δ(18)O values of whole wood obscuring the isotopic signal associated with factors leading up to and including physiological death. We examined whole sapwood and α-cellulose from live and dead specimens of ponderosa pine (Pinus ponderosa), one-seed juniper (Juniperous monosperma), piñon pine (Pinus edulis) and white fir (Abies concolor), including those with fungal growth and beetle frass in the wood, to determine if α-cellulose extraction is necessary for the accurate interpretation of isotopic compositions in the dead trees. We found that the offset between the δ(13)C or δ(18)O values of α-cellulose and whole wood was the same for both live and dead trees across a large range of inter-annual and regional climate differences. The method of α-cellulose extraction, whether Leavitt-Danzer or Standard Brendel modified for small samples, imparts significant differences in the δ(13)C (up to 0.4‰) and δ(18) O (up to 1.2‰) of α-cellulose, as reported by other studies. There was no effect of beetle frass or blue-stain fungus (Ophiostoma) on the δ(13)C and δ(18)O of whole wood or α-cellulose. The relationships between whole wood and α-cellulose δ(13)C for ponderosa, piñon and juniper yielded slopes of ~1, while the relationship between δ(18)O of whole wood and α-cellulose was less clear. We conclude that there are few analytical or sampling obstacles to retrospective studies of isotopic patterns of tree mortality in forests of the western United States. Published in 2011 by John Wiley & Sons, Ltd.

The effects of α-cellulose extraction and blue-stain fungus on retrospective studies of carbon and oxygen isotope variation in live and dead trees†

Science.gov (United States)

English, N.B.; McDowell, N.G.; Allen, Craig D.; Mora, C.

2011-01-01

Tree-ring carbon and oxygen isotope ratios from live and recently dead trees may reveal important mechanisms of tree mortality. However, wood decay in dead trees may alter the δ13C and δ18O values of whole wood obscuring the isotopic signal associated with factors leading up to and including physiological death. We examined whole sapwood and α-cellulose from live and dead specimens of ponderosa pine (Pinus ponderosa), one-seed juniper (Juniperous monosperma), piñon pine (Pinus edulis) and white fir (Abies concolor), including those with fungal growth and beetle frass in the wood, to determine if α-cellulose extraction is necessary for the accurate interpretation of isotopic compositions in the dead trees. We found that the offset between the δ13C or δ18O values of α-cellulose and whole wood was the same for both live and dead trees across a large range of inter-annual and regional climate differences. The method of α-cellulose extraction, whether Leavitt-Danzer or Standard Brendel modified for small samples, imparts significant differences in the δ13C (up to 0.4‰) and δ18O (up to 1.2‰) of α-cellulose, as reported by other studies. There was no effect of beetle frass or blue-stain fungus (Ophiostoma) on the δ13C and δ18O of whole wood or α-cellulose. The relationships between whole wood and α-cellulose δ13C for ponderosa, piñon and juniper yielded slopes of ~1, while the relationship between δ18O of whole wood and α-cellulose was less clear. We conclude that there are few analytical or sampling obstacles to retrospective studies of isotopic patterns of tree mortality in forests of the western United States.

The study of mechanical behavior on the interface between calcar-defect femur and restorations by means of finite element analysis

International Nuclear Information System (INIS)

Shi, X.H.; Jiang, W.; Chen, H.Z.; Zou, W.; Wang, W.D.; Guo, Z.; Luo, J.M.; Gu, Z.W.; Zhang, X.D.

2008-01-01

The mechanical behaviors of calcar-defected femur and restorations under physiological load are the key factors that will greatly influence the success of femur calcar defect repairing, especially the stress distribution on the bone-restoration interface. 3D finite elements analysis (FEA) was used to analyze the mechanical characters on the interfaces between femoral calcar defects and bone cement or HA restorations. Under the load of two times of a human weight (1436.03 N) and with the increase of the defect dimension from 6 mm to 12 mm, the maximal stresses on the surface of restorations are from 7.06 MPa to 11.89 MPa for bone cement and 2.97-9 MPa for HA separately. In this condition, HA restoration will probably be broken on the bone-restoration interface when the defect diameter is beyond 8 mm. Furthermore, under the load of 1.5 times of a human weight, HA restoration would not be safe unless the defect dimension is smaller than 10 mm, because the maximal stress (4.62 MPa) on the restoration is only a little lower than compressive strength of HA, otherwise the bone fixation device should be applied to ensure the safety. It is relatively safe for all restorations under all the tested defect sizes when the load is just the weight of a human body

Multicenter Assessment of Gram Stain Error Rates.

Science.gov (United States)

Samuel, Linoj P; Balada-Llasat, Joan-Miquel; Harrington, Amanda; Cavagnolo, Robert

2016-06-01

Gram stains remain the cornerstone of diagnostic testing in the microbiology laboratory for the guidance of empirical treatment prior to availability of culture results. Incorrectly interpreted Gram stains may adversely impact patient care, and yet there are no comprehensive studies that have evaluated the reliability of the technique and there are no established standards for performance. In this study, clinical microbiology laboratories at four major tertiary medical care centers evaluated Gram stain error rates across all nonblood specimen types by using standardized criteria. The study focused on several factors that primarily contribute to errors in the process, including poor specimen quality, smear preparation, and interpretation of the smears. The number of specimens during the evaluation period ranged from 976 to 1,864 specimens per site, and there were a total of 6,115 specimens. Gram stain results were discrepant from culture for 5% of all specimens. Fifty-eight percent of discrepant results were specimens with no organisms reported on Gram stain but significant growth on culture, while 42% of discrepant results had reported organisms on Gram stain that were not recovered in culture. Upon review of available slides, 24% (63/263) of discrepant results were due to reader error, which varied significantly based on site (9% to 45%). The Gram stain error rate also varied between sites, ranging from 0.4% to 2.7%. The data demonstrate a significant variability between laboratories in Gram stain performance and affirm the need for ongoing quality assessment by laboratories. Standardized monitoring of Gram stains is an essential quality control tool for laboratories and is necessary for the establishment of a quality benchmark across laboratories. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Research on pre-staining gel electrophoresis

International Nuclear Information System (INIS)

Zhong Ruibo; Liu Yushuang; Zhang Ping; Liu Jingran; Zhao Guofen; Zhang Feng

2014-01-01

Background: Gel electrophoresis is a powerful biochemical separation technique. Most biological molecules are completely transparent in the visible region of light, so it is necessary to use staining to show the results after gel electrophoresis, and the general steps of conventional staining methods are time-consuming. Purpose: We try to develop a novel approach to simplify the gel electrophoresis: Pre-Staining Gel Electrophoresis (PSGE), which can make the gel electrophoresis results monitored in real time. Methods: Pre-stain the protein samples with Coomassie Brilliant Blue (CBB) for 30 min before loading the sample into the gel well. Results and Conclusion: PSGE can be successfully used to analyze the binding efficiency of Bovine Serum Albumin (BSA) and amphiphilic polymer via chemical coupling and physical absorption, and the double PSGE also shows a great potential in bio-analytical chemistry. (authors)

Surface staining of small intestinal biopsies

DEFF Research Database (Denmark)

Poulsen, Steen Seier

1977-01-01

Small intestinal biopsies are most often by routine examined under a stereo-microscope, prior to embedding for histological examination. This is done in order to get a view of the appearance of the mucosal pattern, especially villus configuration. The distinctness of the surface pattern however......, is improved considerably if the biopsies are stained with Alcian Green and/or PAS before they are examined. In the present paper a detailed description is given of staining of small intestinal biopsies as whole mounts. The difference between the unstained and the stained biopsies is illustrated by a few...

Fate of Zinc Oxide Nanoparticles Coated onto Macronutrient Fertilizers in an Alkaline Calcareous Soil

Science.gov (United States)

Milani, Narges; Hettiarachchi, Ganga M.; Kirby, Jason K.; Beak, Douglas G.; Stacey, Samuel P.; McLaughlin, Mike J.

2015-01-01

Zinc oxide (ZnO) nanoparticles may provide a more soluble and plant available source of Zn in Zn fertilizers due to their greater reactivity compared to equivalent micron- or millimetre-sized (bulk) particles. However, the effect of soil on solubility, spatial distribution and speciation of ZnO nanoparticles has not yet been investigated. In this study, we examined the diffusion and solid phase speciation of Zn in an alkaline calcareous soil following application of nanoparticulate and bulk ZnO coated fertilizer products (monoammonium phosphate (MAP) and urea) using laboratory-based x-ray techniques and synchrotron-based μ-x-ray fluorescence (μ–XRF) mapping and absorption fine structure spectroscopy (μ–XAFS). Mapping of the soil-fertilizer reaction zones revealed that most of the applied Zn for all treatments remained on the coated fertilizer granule or close to the point of application after five weeks of incubation in soil. Zinc precipitated mainly as scholzite (CaZn2(PO4)2.2H2O) and zinc ammonium phosphate (Zn(NH4)PO4) species at the surface of MAP granules. These reactions reduced dissolution and diffusion of Zn from the MAP granules. Although Zn remained as zincite (ZnO) at the surface of urea granules, limited diffusion of Zn from ZnO-coated urea granules was also observed for both bulk and nanoparticulate ZnO treatments. This might be due to either the high pH of urea granules, which reduced solubility of Zn, or aggregation (due to high ionic strength) of released ZnO nanoparticles around the granule/point of application. The relative proportion of Zn(OH)2 and ZnCO3 species increased for all Zn treatments with increasing distance from coated MAP and urea granules in the calcareous soil. When coated on macronutrient fertilizers, Zn from ZnO nanoparticles (without surface modifiers) was not more mobile or diffusible compared to bulk forms of ZnO. The results also suggest that risk associated with the presence of ZnO NPs in calcareous soils would be the

Utility of Modified Ultrafast Papanicolaou Stain in Cytological Diagnosis.

Science.gov (United States)

Sinkar, Prachi; Arakeri, Surekha Ulhas

2017-03-01

Need for minimal turnaround time for assessing Fine Needle Aspiration Cytology (FNAC) has encouraged innovations in staining techniques that require lesser staining time with unequivocal cell morphology. The standard protocol for conventional Papanicolaou (PAP) stain requires about 40 minutes. To overcome this, Ultrafast Papanicolaou (UFP) stain was introduced which reduces staining time to 90 seconds and also enhances the quality. However, reagents required for this were not easily available hence, Modified Ultrafast Papanicolaou (MUFP) stain was introduced subsequently. To assess the efficacy of MUFP staining by comparing the quality of MUFP stain with conventional PAP stain. FNAC procedure was performed by using 10 ml disposable syringe and 22-23 G needle. Total 131 FNAC cases were studied which were lymph node (30), thyroid (38), breast (22), skin and soft tissue (24), salivary gland (11) and visceral organs (6). Two smears were prepared and stained by MUFP and conventional PAP stain. Scores were given on four parameters: background of smears, overall staining pattern, cell morphology and nuclear staining. Quality Index (QI) was calculated from ratio of total score achieved to maximum score possible. Statistical analysis using chi square test was applied to each of the four parameters before obtaining the QI in both stains. Students t-test was applied to evaluate the efficacy of MUFP in comparison with conventional PAP stain. The QI of MUFP for thyroid, breast, lymph node, skin and soft tissue, salivary gland and visceral organs was 0.89, 0.85, 0.89, 0.83, 0.92, and 0.78 respectively. Compared to conventional PAP stain QI of MUFP smears was better in all except visceral organ cases and was statistically significant. MUFP showed clear red blood cell background, transparent cytoplasm and crisp nuclear features. MUFP is fast, reliable and can be done with locally available reagents with unequivocal morphology which is the need of the hour for a cytopathology set-up.

Blood culture gram stain, acridine orange stain and direct sensitivity-based antimicrobial therapy of bloodstream infection in patients with trauma.

Science.gov (United States)

Behera, B; Mathur, P; Gupta, B

2010-01-01

The purpose of this study was to ascertain if the simple practice of Gram stain, acridine orange stain and direct sensitivity determination of positive blood culture bottles could be used to guide early and appropriate treatment in trauma patients with clinical suspicion of sepsis. The study also aimed to evaluate the error in interpreting antimicrobial sensitivity by direct method when compared to standard method and find out if specific antibiotic-organism combination had more discrepancies. Findings from consecutive episodes of blood stream infection at an Apex Trauma centre over a 12-month period are summarized. A total of 509 consecutive positive blood cultures were subjected to Gram staining. AO staining was done in BacT/ALERT-positive Gram-stain negative blood cultures. Direct sensitivity was performed from 369 blood culture broths, showing single type of growth in Gram and acridine orange staining. Results of direct sensitivity were compared to conventional sensitivity for errors. No 'very major' discrepancy was found in this study. About 5.2 and 1.8% minor error rates were noted in gram-positive and gram-negative bacteria, respectively, while comparing the two methods. Most of the discrepancies in gram-negative bacteria were noted in beta lactam - beta lactamase inhibitor combinations. Direct sensitivity testing was not reliable for reporting of methicillin and vancomycin resistance in Staphylococci. Gram stain result together with direct sensitivity testing is required for optimizing initial antimicrobial therapy in trauma patients with clinical suspicion of sepsis. Gram staining and AO staining proved particularly helpful in the early detection of candidaemia.

Moessbauer study of the transformations occurring in egyptian alluvial and calcareous clays during firing

International Nuclear Information System (INIS)

Sallam, H.A.; Gomma, N.S.; El Meligy, W.M.; Eissa, N.A.

1994-01-01

Egyptian alluvial and calcareous clay samples, which are used in pottery production, were heated at different temperatures in air up to 1100 degree C. The physicochemical transformations were followed up and could be separated in two main stages; i) the dehydroxilation, of the clay mineral, stage for firing up to 700 degree C, ii) the second stage for firing at 900 degree C and higher. In the later stage the effect of calcium content was very pronounced. 2 figs

Simulation of Zinc Release Affected by Microbial Inoculation and Salinity Levels in a non-sterile Calcareous Soil Using kinetic Models

Directory of Open Access Journals (Sweden)

hamidreza boostani

2017-02-01

Full Text Available Introduction: Zinc (Zn is an important nutrient element for humans and plants that controls many biochemical and physiological functions of living organisms. Zinc deficiency is common in high pH, low organic matter, carbonatic, saline and sodic soils. Salinity is a major abiotic environmental stresses that limits growth and production in arid and semi-arid regions of the world. Bioavailability of Zn is low in calcareous and saline soils having high levels of pH and calcium. Desorption of Zinc (Zn from soil as influenced by biological activities is one of the important factors that control Zn bioavailability. Few reports on the effects of salinity on the availability and desorption kinetics of Zn are available. Rupa et al. (2000 reported that increasing the salt concentration led to increase Zn desorption from soil due to ion competition on soil exchangeable sites. Different kinetic equations have been used to describe the release kinetics of nutrients. Reyhanitabar and Gilkes (2010 found that the power function model was the best equation to describe the release of Zn from some calcareous soil of Iran, whereas Baranimotlagh and Gholami (2013 stated that the best model for describing Zn desorption from 15 calcareous soils of Iran was the first-order equation.less attention has been paid to kinetics of Zn release by DTPA extractant over time by inoculation of plant growth promoting rhizobacteria and mycorrhizae fungi in comination with soil salinity.The objective of this study was to evaluate the effect of plant growth promoting rhizobacteria (PGPR and mycorrhizae fungi (MF inoculation on release kinetic of Zn in a calcareous soil at different salinity levels after in cornplantation Materials and Methods: A composite sample of bulk soil from the surface horizon (0-30 cm of a calcareous soil from southern part of Iran was collected, air dried, passed through 2 mm sieve, and thoroughly mixed. Routine soil analysis was performed to determine some

New Grocott Stain without Using Chromic Acid

International Nuclear Information System (INIS)

Shiogama, Kazuya; Kitazawa, Kayo; Mizutani, Yasuyoshi; Onouchi, Takanori; Inada, Ken-ichi; Tsutsumi, Yutaka

2015-01-01

We established a new “ecological” Grocott stain for demonstrating fungi, based upon a 4R principle of refusal, reduction, reuse, and recycle of waste management. Conventional Grocott stain employs environmentally harsh 5% chromic acid for oxidization. Initially, we succeeded in reducing the concentration of chromic acid from 5% to 1% by incubating the solution at 60°C and using five-fold diluted chromic acid solution at which point it was reusable. Eventually, we reached the refusal level where 1% periodic acid oxidization was efficient enough, when combined with preheating of sections in the electric jar, microwave oven, or pressure pan. For convenience sake, we recommend pressure pan heating in tap water for 10 min. Stainability of fungi in candidiasis and aspergillosis was comparable with conventional Grocott stain, while Mucor hyphae showed enhanced staining. The modified sequence was further applicable to detecting a variety of mycotic pathogens in paraffin sections. Our environmentally-friendly Grocott stain also has the advantage of avoiding risk of human exposure to hexavalent chromium solution in the histopathology laboratory. The simple stain sequence is can be easily applied worldwide

Using multi-proxy palaeoecology to test a relict status of refugial populations of calcareous-fen species in the Western Carpathians

Czech Academy of Sciences Publication Activity Database

Hájková, Petra; Horsák, M.; Hájek, Michal; Jankovská, Vlasta; Jamrichová, Eva; Moutelíková, J.

2015-01-01

Roč. 25, č. 4 (2015), s. 702-715 ISSN 0959-6836 Institutional support: RVO:67985939 Keywords : biodiversity * calcareous fen * fossil record * Holocene extinction * Western Carpathians Subject RIV: EF - Botanics Impact factor: 2.135, year: 2015

Gram staining apparatus for space station applications

Science.gov (United States)

Molina, T. C.; Brown, H. D.; Irbe, R. M.; Pierson, D. L.

1990-01-01

A self-contained, portable Gram staining apparatus (GSA) has been developed for use in the microgravity environment on board the Space Station Freedom. Accuracy and reproducibility of this apparatus compared with the conventional Gram staining method were evaluated by using gram-negative and gram-positive controls and different species of bacteria grown in pure cultures. A subsequent study was designed to assess the performance of the GSA with actual specimens. A set of 60 human and environmental specimens was evaluated with the GSA and the conventional Gram staining procedure. Data obtained from these studies indicated that the GSA will provide the Gram staining capability needed for the microgravity environment of space.

Calcareous nannoplankton assemblages across the Pliocene-Pleistocene transition in the southwestern Indian Ocean, IODP Site U1475

Science.gov (United States)

Cares, Z.; Farr, C. L.; LeVay, L.; Tangunan, D.; Brentegani, L.

2017-12-01

International Ocean Discovery Program (IODP) Expedition 361 cored six sites along the greater Agulhas Current System to track its intensity through time and to better understand its role in global oceanic circulation and climate. One of the main scientific objectives of this expedition was to determine the dynamics of the Indian-Atlantic Ocean Gateway circulation during Pliocene-Pleistocene climate changes in association with changing wind fields and migrating ocean fronts. The Indian-Atlantic Ocean Gateway contains a pronounced oceanic frontal system, the position of which has the potential to influence global climate on millennial scales. Owing to the physical differences between the frontal zones, this region has complex biogeochemistry, changes in phytoplankton distribution, and variations in primary productivity. Site U1475 was cored on the Agulhas Plateau in the Southwestern Indian Ocean and recovered a complete sequence of calcareous ooze spanning the last 7 Ma. Previous studies at this locality have shown latitudinal migrations of the frontal zones over the past 350 kyr that resulted in prominent millennial shifts in primary production, biological pump efficiency, and microfossil assemblages that coincide with Antarctic climate variability. Here we present initial results comprised of calcareous nannoplankton assemblages in order to test if similar latitudinal frontal migrations occurred during the Pliocene-Pleistocene transition (PPT; 2.7 Ma). The calcareous nannoplankton assemblage shows an abundance increase of taxa associated with cooler water and higher primary production across the PPT interval. In addition to a change in species abudance, the Shannon diversity index drops notably across the transition, which is typical of nannoplankton communities in more productive regions. These data suggest that a long-term change in sea surface temperature and nutrient availability took place across the PPT, potentially linked to the northward migration of

Efficacy of SYBR 14/propidium iodide viability stain for the amphibian chytrid fungus Batrachochytrium dendrobatidis.

Science.gov (United States)

Stockwell, M P; Clulow, J; Mahony, M J

2010-01-25

The amphibian chytrid fungus Batrachochytrium dendrobatidis is a recently described pathogen that has been implicated as a causal agent in the global decline in amphibians. Research into its biology and epidemiology has frequently involved in vitro experimentation. However, this research is currently limited by the inability to differentiate between viable and inviable zoospores. Stains are frequently used to determine cell viability, and this study tested a 2-colour fluorescence assay for the detection and quantification of viable B. dendrobatidis zoospores. The results show that the nucleic acid stains SYBR 14 and propidium iodide are effective in distinguishing live from dead zoospores, and a protocol has been optimized for their use. This viability assay provides an efficient and reliable tool that will have applications in B. dendrobatidis challenge and amphibian exposure experiments.

Efficacy of in-house fluorescent stain for fungus

Directory of Open Access Journals (Sweden)

K. R. L. Surya Kirani

2017-01-01

Full Text Available Context: Mycotic infections are gaining importance in the present day medicine, and definite demonstration of fungus is essential for diagnosis. Small numbers of organisms in the smear can be identified by fluorescence microscopy. Calcofluor white (CFW fluorescent stain is a textile brightener mixed with Evans blue. It is expensive and not easily available. Aims: (1 To assess the efficacy of in-house CFW fluorescent stain for fungus in relation to conventional CFW stain, histopathology, and culture. (2 To determine sensitivity, specificity, negative predictive value (NPV, and positive predictive value (PPV with culture as gold standard. Settings and Design: One hundred cases of suspected dermatophytosis and 15 cases of systemic mycosis were included in the study. Subjects and Methods: The local whitener Ranipal is added with Robin blue, another brightener, and was used to stain teased fungal cultures. Skin, hair, and nails require pretreatment with potassium hydroxide (KOH. Biopsy slides require deparaffinization and pretreatment with KOH before staining. Conventional calcofluor stain, histopathology, and culture were done. Statistical Analysis Used: Statistical analysis was performed using sensitivity, specificity, NPV, and PPV. Results: The results are consistently comparable with conventional stain. The sensitivity was 100%, specificity was 93.3%, NPV was 100%, and PPV was 85.7%. It is also cost effective when compared to commercial stains. Conclusions: In-house stain can be used for screening of fungus in direct samples, biopsies as alternative in resource-constrained laboratories.

Colorimetric sensor for triphosphates and their application as a viable staining agent for prokaryotes and eukaryotes.

Science.gov (United States)

Ghosh, Amrita; Shrivastav, Anupama; Jose, D Amilan; Mishra, Sanjiv K; Chandrakanth, C K; Mishra, Sandhya; Das, Amitava

2008-07-15

The chromogenic complex 1 x Zn (where 1 is (E)-4-(4-dimethylamino-phenylazo)-N,N-bispyridin-2-ylmethyl-benzenesulfonamide) showed high affinity toward the phosphate ion in tetrabutylammonium phosphate in acetonitrile solution and could preferentially bind to adenosine triphosphate (ATP) in aqueous solution at physiological pH. This binding caused a visual change in color, whereas no such change was noticed with other related anions (adenosine monophosphate, adenosine diphosphate, pyrophosphate, and phosphate) of biological significance. Thus, 1 x Zn could be used as a staining agent for different biological cells through binding to the ATP, generated in situ by the mitochondria (in eukaryotes). For prokaryotes (bacteria) the cell membrane takes care of the cells' energy conversion, since they lack mitochondria. ATP is produced in their unique cell structure on the cell membrane, which is not found in any eukaryotes. These stained cells could be viewed with normal light microscopy. This reagent could even be used for distinguishing the gram-positive and the gram-negative bacteria (prokaryotes). This dye was found to be nonlipophilic in nature and nontoxic to living microbes (eukaryotes and prokaryotes). Further, stained cells were found to grow in their respective media, and this confirmed the maintenance of viability of the microbes even after staining, unlike with many other dyes available commercially.

The Role of Organic Acids on the Release of Phosphorus and Zinc in a Calcareous Soil

Directory of Open Access Journals (Sweden)

Sareh Nezami

2017-02-01

Full Text Available Introduction: Phosphorus (P and zinc (Zn fixation by soil minerals and their precipitation is one of the major constraints for crop production in calcareous soils. Recent Studies show that root exudates are effective for the extraction of the large amounts of nutrients in calcareous soils. A part of the root exudations are Low Molecular Weight Organic Acids (LMWOAs. LMWOAs are involved in the nutrients availability and uptake by plants, nutrients detoxification, minerals weathering and microbial proliferation in the soil. At nutrients deficiency conditions citric and oxalic acids are released by plants root in large quantities and increase nutrient solubility like P, Zn, Fe, Mn and Cu in the rhizosphere. These components are the large portion of the carbon source in the soil after exudations are mineralized by microorganisms, quickly. In addition, soil surface sorption can affect their half-life and other behaviors in the soil. In order to study the effect of oxalic and citric organic acids on the extraction of phosphorus and zinc from a calcareous soil, an experiment was conducted. Materials and Methods: Studied soil was calcareous and had P and Zn deficiency. Soil sample was collected from A horizon (0-30 cm of Damavand region. 3 g of dried soil sample was extracted with 30 ml of oxalic and citric acids extraction solutions at different concentrations (0.1, 1 and 10 mM and different time periods (10, 60, 180 and 360 minutes on an orbital shaker at 200 rev min-1.The soil extracts then centrifuged for 10 minutes (16000g. After filtering, the pH of the extractions was recorded and then phosphorus, calcium and zinc amounts were determined. Soil extraction with distilled water was used as control. Each treatment was performed in 3 replications. Statistical analysis was performed with ANOVA test followed by the Bonferroni method significant level adjustments due to multiple comparisons. Results and Discussion: The results of variance analysis showed

Modified Genta triple stain for identifying Helicobacter pylori.

OpenAIRE

el-Zimaity, H M; Wu, J; Graham, D Y

1999-01-01

AIM: To evaluate whether lead nitrate could replace uranyl nitrate in the Genta stain for H pylori without sacrificing the advantages of the triple stain (Steiner silver impregnation combined with Alcian blue and haematoxylin/eosin (H&E)). METHODS: A comparison was made in 16 specimens between the original triple stain and the revised version. One pathologist evaluated all sections. RESULTS: Direct substitution of lead nitrate for uranium nitrate produced well stained organisms without interf...

Mining and geologic characterization of calcareous resources for the cement industry in Uruguay

International Nuclear Information System (INIS)

De Santana, H.; Veroslavsky, G.; Sanchez, L.; Rossini, C.; Aubet, N.; Loureiro, J.; Gutierrez, L.

2000-01-01

The main objective of this work was the study of geological and mining potential that Uruguay has on limestone rocks rich in calcium and poor in magnesium and silica, which are considered primary requirements suitable for the manufacture of cement. The results obtained allow defining four major regions of the country that although do not include all occurrences of calcareous rocks, they do not constitute the most important areas concerning: rock quality, higher volumes and improved extraction possibilities. The areas are: Queguay, Minas, Carape and Treinta y tres

A neogene seawater sulfur isotope age curve from calcareous pelagic microfossils

International Nuclear Information System (INIS)

Burdett, J.W.; Arthur, M.A.; Richardson, M.

1989-01-01

Until now, our knowledge of the sulfur isotopic composition of seawater through geologic time has depended on stable isotopic analysis of sulfate from evaporites. Owing to the sporadic occurrence of evaporites through time, the secular sulfur isotope age curve contains many gaps with little or no data. In order to fill in some of these gaps, particularly the Neogene, we have analyzed the sulfur isotopic composition of carbonate-associated sulfate in carbonate tests of planktonic foraminifera. Other investigators have shown that sulfate may occur in biogenic calcites either lattice-bound, as micro-fluid inclusions, in adsorbed phases, or as protein polysaccharides. Whatever the origin, the sulfur isotopic composition of this sulfate appears to be representative of that of the water in which the organism lived, as shown by results on recent calcareous foraminifera and macrofossils. Using this approach for study of Miocene to Recent pelagic marine sediments supplemented by new data for Miocene marine evaporites from the Gulf of Suez, we have found that the δ 34 S of seawater has decreased about 2.5per mille over the past 25 m.y. and that most of the decrease has occurred over the past 5 m.y., paralleling a decrease in the δ 13 C of dissolved oceanic bicarbonate from the same interval. Sedimentary redox models based on isotope records suggest that organic carbon and sulfide burial have both decreased over the past 5 m.y. Alternatively, an increase in weathering rates over the past 5 m.y. would not require a decrease in organic carbon or sulfide burial as long as the isotopic effect of the increased river input exceeds the isotopic effect of the burial of the reduced species. In either case, the net result would be a decrease in atmospheric p O2 . (orig.)

Ozone pollution affects flower numbers and timing in a simulated BAP priority calcareous grassland community

International Nuclear Information System (INIS)

Hayes, Felicity; Williamson, Jennifer; Mills, Gina

2012-01-01

Mesocosms representing the BAP Priority habitat ‘Calcareous Grassland’ were exposed to eight ozone profiles for twelve-weeks in two consecutive years. Half of the mesocosms received a reduced watering regime during the exposure periods. Numbers and timing of flowering in the second exposure period were related to ozone concentration and phytotoxic ozone dose (accumulated stomatal flux). For Lotus corniculatus, ozone accelerated the timing of the maximum number of flowers. An increase in mean ozone concentration from 30 ppb to 70 ppb corresponded with an advance in the timing of maximum flowering by six days. A significant reduction in flower numbers with increasing ozone was found for Campanula rotundifolia and Scabiosa columbaria and the relationship with ozone was stronger for those that were well-watered than for those with reduced watering. These changes in flowering timing and numbers could have large ecological impacts, affecting plant pollination and the food supply of nectar feeding insects. - Highlights: ► An increase in ozone accelerated timing of maximum flowering in Lotus corniculatus. ► Ozone reduced flower numbers in Campanula rotundifolia and Scabiosa columbaria. ► Reduced water availability did not protect most species from the effects of ozone. - Increased tropospheric ozone affected timing of flowering and maximum flower numbers in calcareous grassland mesocosms.

Phosphorus reduces the zinc concentration in cereals pot-grown on calcareous Vertisols from southern Spain.

Science.gov (United States)

Sánchez-Rodríguez, Antonio Rafael; Del Campillo, María Carmen; Torrent, José

2017-08-01

Zinc deficiency, a major problem in crops grown on soils low in available Zn, is even more important in phosphorus-rich soils. This work aimed to elucidate the effects of soil P and Zn levels, and of fertilizer application, on yield and Zn concentration in cereal grains. Wheat and barley were successively pot-grown on 20 calcareous Vertisols low in available Zn and ranging widely in available P. Grain yield in the plants grown on the native soils was positively correlated with Olsen P but not with diethylenetriaminepentaacetic acid (DTPA)-extractable Zn except for wheat on P-rich soils. Grain Zn concentration was negatively correlated with Olsen P. Grain Zn uptake differed little among soils. Application of P to the soils increased grain yield insignificantly and P concentration significantly; however, it reduced grain Zn concentration (particularly at low Olsen P values). Applying Zn alone only increased grain Zn concentration, whereas applying P and Zn in combination increased yield and grain Zn concentration at low and high Olsen P values, respectively. Applying P alone to plants grown on calcareous Vertisols low in available P and Zn may in practice reduce grain Zn concentrations while not increasing grain yield significantly. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

Comparison of staining of mitotic figures by haematoxylin and eosin-and crystal violet stains, in oral epithelial dysplasia and squamous cell carcinoma

Directory of Open Access Journals (Sweden)

Ankle Madhuri

2007-01-01

Full Text Available Mitosis of cells gives rise to tissue integrity. Defects during mitosis bring about abnormalities. Excessive proliferation of cells due to increased mitosis is one such outcome, which is the hallmark in precancer and cancer. The localization of proliferating cells or their precursors may not be obvious and easy. Establishing an easy way to distinguish these mitotic cells will help in grading and understanding their biological potential. Although immunohistochemistry is an advanced method in use, the cost and time factor makes it less feasible for many laboratories. Selective histochemical stains like toluidine blue, giemsa and crystal violet have been used in tissues including the developing brain, neural tissue and skin. Aim of the study: 1To compare the staining of mitotic cells in haematoxylin and eosin with that in crystal violet. 2To compare the number of mitotic figures present in normal oral mucosa, epithelial dysplasia and oral squamous cell carcinoma in crystal violet-stained sections with that in H and E-stained sections. Materials and Methods: Ten tissues of normal oral mucosa and 15 tissues each of oral epithelial dysplasia seen in tobacco-associated leukoplakia and squamous cell carcinoma were studied to evaluate the selectivity of 1% crystal violet for mitotic figures. The staining was compared with standard H and E staining. Statistical analysis was done using Man-Whitney U test. Results: A statistically significant increase in the mean mitotic count was observed in crystal violet-stained sections of epithelial dysplasia as compared to the H and E-stained sections ( p = 0.0327. A similar increase in the mitotic counts was noted in crystal violet-stained sections of oral squamous cell carcinoma as compared to the H and E-stained sections.( p = 0.0443. No significant difference was found in the mitotic counts determined in dysplasia or carcinoma by either the crystal violet ( p = 0.4429 or the H and E-staining techniques ( p = 0

Seasonal calcareous nannoplankton and other biogenic particle fluxes for 1990-2009: twenty-year long records from the central subarctic Pacific Ocean and the Bering Sea

Science.gov (United States)

Takahashi, Kozo; Tsutsui, Hideto

2017-04-01

Time-series sediment traps were deployed for nearly 20 years (1990-2009) at two long-term locations: Station SA (49°N, 174°W, trap depth 4,800 m, water depth 5,400 m) in the central subarctic Pacific, and Station AB (53.5°N, 177°W, trap depth 3,200 m, water depth 3,800 m) in the southern Bering Sea. Among many biogenic particles, calcareous nannoplankton represented nearly half or more of the entire calcium carbonate fluxes of the regions. Dominant taxa include Coccolithus pelagicus and Emiliania huxleyi. The flux maxima of the former taxon occurred twice a year during June and October-November, whereas that of the latter taxon only occurred primarily once a year in November at both stations, indicating environmental preferences of the taxa. Among many environmental conditions, the fluxes of Emiliania huxleyi showed strong correlations with both water temperatures above 45 m depth and air temperatures (these parameters taken with one-month lag [earlier values] considering sinking time of ca. a month to the respective trap depths). Coccolithus pelagicus, on the other hand, showed lower values in the correlation with temperatures (Tsutsui et al., 2016), indicating that this taxon is somewhat more dependent on other factors such as nutrients compared to those of E. huxleyi. The timings of the seasonal flux maxima of calcareous nannoplankton are quite different from and later than those of other taxonomic groups such as diatoms and silicoflagellates. The primary seasonal flux maxima of diatoms and silicoflagellates, for example, occurred in May, a month earlier than the June maximum of C. pelagicus, and secondary seasonal flux maxima occurred in August, 2-3 months earlier than those of calcareous nannoplankton at both stations, based on 8 year flux records for diatoms (Onodera and Takahashi, 2009) and 4 year records for silicoflagellates (Onodera and Takahashi, 2012). By examining seasonal changes of nitrate and phosphate concentrations above 50 m depth from ERDDAP

Calcareous nannofossils of the Jurassic/Cretaceous boundary strata in the Puerto Escaňo section (southern Spain) - biostratigraphy and palaeoecology

Czech Academy of Sciences Publication Activity Database

Svobodová, Andrea; Košťák, M.

2016-01-01

Roč. 67, č. 3 (2016), s. 223-238 ISSN 1335-0552 Institutional support: RVO:67985831 Keywords : Jurasic/Cretaceous boundary * southern Spain * Tethys * biostratigraphy * calcareous nannofossils * palaeoecology Subject RIV: DB - Geology ; Mineralogy Impact factor: 1.358, year: 2016

Impacts of long-term nitrogen fertilization on acid buffering rates and mechanisms of a slightly calcareous clay soil

NARCIS (Netherlands)

Zhang, Yuting; Vries, de Wim; Thomas, Ben W.; Hao, Xiying; Shi, Xiaojun

2017-01-01

Acidification of cropland soils is a serious problem in China that may cause long term pH decline, which threatens the sustainability of soil fertility and crop yields. The objective of this research was to investigate those rates and mechanisms for a slightly calcareous soil. The field data were

A novel washing algorithm for underarm stain removal

Science.gov (United States)

Acikgoz Tufan, H.; Gocek, I.; Sahin, U. K.; Erdem, I.

2017-10-01

After contacting with human sweat which comprise around 27% sebum, anti-perspirants comprising aluminium chloride or its compounds form a jel-like structure whose solubility in water is very poor. In daily use, this jel-like structure closes sweat pores and hinders wetting of skin by sweat. However, when in contact with garments, they form yellowish stains at the underarm of the garments. These stains are very hard to remove with regular machine washing. In this study, first of all, we focused on understanding and simulating such stain formation on the garments. Two alternative procedures are offered to form jel-like structures. On both procedures, commercially available spray or deo-stick type anti-perspirants, standard acidic and basic sweat solutions and artificial sebum are used to form jel-like structures, and they are applied on fabric in order to get hard stains. Secondly, after simulation of the stain on the fabric, we put our efforts on developing a washing algorithm specifically designed for removal of underarm stains. Eight alternative washing algorithms are offered with varying washing temperature, amounts of detergent, and pre-stain removal procedures. Better algorithm is selected by comparison of Tristimulus Y values after washing.

Laser treatment of Port-wine stains

OpenAIRE

Boffa, Michael J.

2001-01-01

A state-of-the-art pulsed dye laser machine to treat port-wine stains and other vascular lesions has been available in the Malta Health Service since 1999. This article reviews the pathophysiology and clinical features of port- wine stains and describes the principles of laser treatment for this condition.

Soil seed-bank composition reveals the land-use history of calcareous grasslands

Science.gov (United States)

Karlík, Petr; Poschlod, Peter

2014-07-01

We compared soil seed banks and vegetation of recent (established on abandoned arable fields) and ancient (continuously managed as pastures at least since 1830) calcareous grasslands if there is any impact of former arable field use. The study was carried out in two regions of Southern Germany with well-preserved dry grassland vegetation: the western Jurassic mountains (Kaltes Feld) and the climatically drier eastern part of Southern Germany (Kallmünz). Total number of species in the seed bank was similar in both regions, but species composition partly differed, reflecting phytogeographical differences between the regions. The total number of emerged seedlings showed a large disparity (5457 compared to 2523 seedlings/m2 in Kaltes Feld and Kallmünz, respectively). Though there were differences in seed bank composition and size, we found a uniform pattern of plant traits (affiliation to phytosociological groups, Raunkiaer plant life-forms and seed longevity), which depended on the age of the grassland. The main conclusion is that seed banks in contemporary calcareous grasslands still reflect the history of former land use - in this case arable cultivation, even though it occurred a long time ago (up to 150 years). Indicators of former arable fields are germinable seeds of weeds which have persisted in the soil to the present. By contrast, weedy species are completely absent from the seed banks of ancient grasslands. Soil seed banks of recent grasslands may be of substantial conservation importance because they may store seeds of rare and endangered weed species such as Kickxia spuria, Silene noctiflora and Stachys annua, the majority of which have already gone extinct from the current vegetation of the study sites.

Adsorption of enrofloxacin in presence of Zn(II) on a calcareous soil.

Science.gov (United States)

Graouer-Bacart, Mareen; Sayen, Stéphanie; Guillon, Emmanuel

2015-12-01

As a result of their consumption, excretion, disposal and persistence, antibiotics enter the soil environment and may be transported to surface and ground waters. During their transfer through soils, retention processes play a key role in their mobility. Antibiotics often coexist with heavy metals in soils due to agricultural practices and other sources of inputs. In this context, this study deals with the co-adsorption of Zn(II) and enrofloxacin (ENR), a widely-used veterinary antibiotic, on a calcareous soil using batch retention experiments and X-ray Absorption Near Edge Structure (XANES) spectroscopy. To improve our understanding of the interaction of this emerging organic contaminant with metal cations at the water-soil interface, the ternary system containing ENR, Zn(II) and a selected calcareous soil was investigated over a pH range between 7 and 10, at different solid-solution contact times and ENR concentrations. The presence of Zn(II) slightly influenced the retention of the antibiotic, leading to an increase of the adsorbed ENR amounts. The distribution coefficient Kd value increased from 0.66 Lg(-1) for single ENR adsorption to 1.04 Lg(-1) in presence of Zn(II) at a 1/2 ENR/Zn(II) ratio. The combination of adsorption isotherm data, solution speciation diagrams and XANES spectra evidenced a small proportion of Zn(II)-ENR complexes at soil pH leading to the slight increase of ENR adsorption in presence of zinc. These results suggest that it is necessary to consider the interaction between ENR and metal cations when assessing the mobility of ENR in soils. Copyright © 2015 Elsevier Inc. All rights reserved.

Model system for plant cell biology: GFP imaging in living onion epidermal cells

Science.gov (United States)

Scott, A.; Wyatt, S.; Tsou, P. L.; Robertson, D.; Allen, N. S.

1999-01-01

The ability to visualize organelle localization and dynamics is very useful in studying cellular physiological events. Until recently, this has been accomplished using a variety of staining methods. However, staining can give inaccurate information due to nonspecific staining, diffusion of the stain or through toxic effects. The ability to target green fluorescent protein (GFP) to various organelles allows for specific labeling of organelles in vivo. The disadvantages of GFP thus far have been the time and money involved in developing stable transformants or maintaining cell cultures for transient expression. In this paper, we present a rapid transient expression system using onion epidermal peels. We have localized GFP to various cellular compartments (including the cell wall) to illustrate the utility of this method and to visualize dynamics of these compartments. The onion epidermis has large, living, transparent cells in a monolayer, making them ideal for visualizing GFP. This method is easy and inexpensive, and it allows for testing of new GFP fusion proteins in a living tissue to determine deleterious effects and the ability to express before stable transformants are attempted.

7 CFR 28.442 - Middling Yellow Stained Color.

Science.gov (United States)

2010-01-01

... 7 Agriculture 2 2010-01-01 2010-01-01 false Middling Yellow Stained Color. 28.442 Section 28.442... Stained Color. Middling Yellow Stained Color is American Upland cotton which in color is deeper than Middling Tinged Color. [57 FR 34498, Aug. 5, 1992] below color grade cotton ...

Short Nissl staining for incubated cryostat sections of the brain.

Science.gov (United States)

Lindroos, O F

1991-01-01

Nissl stain often binds poorly to cryostat sections which have been incubated in solutions of radiolabeled ligands. Such incubation is used in receptor autoradiography of the brain when using the in vitro method. We have developed a rapid (16 min) modification of Nissl staining for sections that bind stain poorly, e.g., incubated sections. The method stains well sections which cannot be stained with other rapid Nissl staining methods.

Near-UV laser treatment of extrinsic dental enamel stains.

Science.gov (United States)

Schoenly, J E; Seka, W; Featherstone, J D B; Rechmann, P

2012-04-01

The selective ablation of extrinsic dental enamel stains using a 400-nm laser is evaluated at several fluences for completely removing stains with minimal damage to the underlying enamel. A frequency-doubled Ti:sapphire laser (400-nm wavelength, 60-nanosecond pulse duration, 10-Hz repetition rate) was used to treat 10 extracted human teeth with extrinsic enamel staining. Each tooth was irradiated perpendicular to the surface in a back-and-forth motion over a 1-mm length using an ∼300-µm-diam 10th-order super-Gaussian beam with fluences ranging from 0.8 to 6.4 J/cm(2) . Laser triangulation determined stain depth and volume removed by measuring 3D surface images before and after irradiation. Scanning electron microscopy evaluated the surface roughness of enamel following stain removal. Fluorescence spectroscopy measured spectra of unbleached and photobleached stains in the spectral range of 600-800 nm. Extrinsic enamel stains are removed with laser fluences between 0.8 and 6.4 J/cm(2) . Stains removed on sound enamel leave behind a smooth enamel surface. Stain removal in areas with signs of earlier cariogenic acid attacks resulted in isolated and randomly located laser-induced, 50-µm-diam enamel pits. These pits contain 0.5-µm diam, smooth craters indicative of heat transfer from the stain to the enamel and subsequent melting and water droplet ejection. Ablation stalling of enamel stains is typically observed at low fluences (Laser ablation of extrinsic enamel stains at 400 nm is observed to be most efficient above 3 J/cm(2) with minimal damage to the underlying enamel. Unsound underlying enamel is also observed to be selectively removed after irradiation. Copyright © 2012 Wiley Periodicals, Inc.

Port-wine stain

Science.gov (United States)

... About MedlinePlus Show Search Search MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español You Are Here: Home → Medical Encyclopedia → Port-wine stain URL of this page: //medlineplus.gov/ency/ ...

Effect of Melamine Sponge on Tooth Stain Removal.

Science.gov (United States)

Otsuka, Takero; Kawata, Toshitsugu

2015-01-01

To investigate the stain removal ability of melamine sponge before aesthetic tooth whitening in extracted teeth. Melamine sponge of thickness 40 mm was compressed and the destruction of the partition wall structure during the compression process was examined under a stereoscopic microscope. An extracted human tooth was cleaned by normal polishing or with melamine sponge for 90 s. To evaluate the stain level, the tooth surfaces were photographed under a stereoscopic microscope at 0, 30, 60 and 90 s. The residual stained region was traced in a high-magnification photograph, and the stain intensity was presented as a change, relative to the intensity before the experiment (0 s). Mechanical cleaning by toothbrushing produced polishing scratches on the tooth surface, whereas use of the melamine sponge resulted in only minimal scratches. As the compression level increased, the stain-removing effect tended to become stronger. Melamine sponge can remove stains from the tooth surface more effectively and less invasively compared to a conventional toothbrush. As no new scratches are made on the tooth surface when using a melamine sponge brush, the risk of re-staining is reduced. Cleaning using a melamine sponge brush can be easily and effectively performed at home and in a dental office.

LANTHANUM STAINING OF THE SURFACE COAT OF CELLS

Science.gov (United States)

Shea, Stephen M.

1971-01-01

Among the techniques which have been reported to stain the surface coat of cells, for electron microscopy, is lanthanum staining en bloc. Similarly, the presence of the cationic dye, Alcian blue 8GX, in a primary glutaraldehyde fixative has been reported to improve the preservation of the surface coat of cells of many types; however, the preserved coat is not very electron opaque unless thin sections are counterstained. The present paper shows that for several rat tissues lanthanum staining en bloc is an effective electron stain for the cell surface, giving excellent contrast, if combined sequentially with prefixation in an aldehyde fixative containing Alcian blue. The cationic substance cetylpyridinium chloride was found to have a similar effect to that of Alcian blue in enhancing the lanthanum staining of the surface coat material of the brush border of intestinal epithelial cells. The patterns of lanthanum staining obtained for the tissues studied strikingly resemble those reported in the literature where tissues are stained by several standard methods for demonstrating mucosubstances at the ultrastructural level. This fact and the reproduction of the effect of Alcian blue by cetylpyridinium chloride constitute a persuasive empirical argument that the material visualized is a mucopolysaccharide or mucopolysaccharide-protein complex. PMID:4108476

Fungal Fluorescence in Hematoxylin-Eosin Stained Sections

Directory of Open Access Journals (Sweden)

Murat Durdu

2017-06-01

Full Text Available A forty-six-year-old male presented to our dermatology clinic with two-year history of itching on his groin. His medical history revealed various topical corticosteroid creams without improvement of the skin lesion. Dermatological examination revealed erythematous nodules and follicular pustules on erythematous background on the inguinal area (Figure 1a. Potassium hydroxide (KOH examination was negative. Tzanck smear revealed abundant neutrophils without bacteria, fungi, or parasite. The histopathological examination showed granuloma formation with multinuclear giant cells and Periodic acid-Schiff (PAS-positive hyphae and spores around the hair follicles (Figure 1b, 1c. Hematoxylin-eosin (H&E-stained slides were examined under an immunofluorescence microscope, and these hyphae and spores showed autofluorescence (Figure 1d. Based on the clinical and histopathological findings, a Majocchi’s granuloma was considered. All lesions disappeared with topical and systemic terbinafine (250 mg/day treatment for six weeks.\tPearls;\tClinical: Not only bacteria, but also fungi, parasites, and viruses may cause folliculitis. Cytology should be initially done to identify the causes of infectious folliculitis. In case of negative cytology, histopathological examination and molecular methods can be used.\tCytological: To cytologically identify all of the causes of folliculitis, four separate samples should be taken: (i the first sample is stained with May-Grünwald-Giemsa for routine cytological examination; (ii the second sample is used for KOH testing; (iii the third sample is stained with an acid-fast stain to detect mycobacteria; and (iv the last specimen is Gram-stained to identify whether it is Gram-positive or Gram-negative (1. Histopathological: In infectious diseases, a definitive diagnosis should be done to identify the etiologic agent. The detection of fungal elements is challenging, when histopathological examination is performed with the H

Applications of some non destructive testing techniques to the characterization of calcareous rocks: ultrasounds, X and gamma-ray radiography, tomography, neutron radiography

International Nuclear Information System (INIS)

Sicardy, O.

1986-02-01

NUCLEART Laboratory has been developping various techniques of conservation of art objects made of wood or stone. It has, among others, achieved a technique of strengthening porous stone objects, by resin impregnation followed by polymerization under gamma rays. The good conduct of such operations implies the existence of characterization means, before and after treatment of the objects. Two means of rocks characterization have been studied: - ultrasound techniques, - radiography techniques. The first part consists in a general description of the calcareous rocks morphology and a presentation of the studied specimens. The second part deals with the application of ultrasound techniques to rocks. Experimentally, one pays particular attention to the specific aspects of ultrasounds propagation inside materials like porous rocks, and especially diffusion phenomena. Results were interpreted in terms of propagation medium structure. Practical interest for rocks control through such techniques has been underligned. The third part concerns the application of radiographic techniques to calcareous rocks. Experimental work consists in establishing exposure curves for a wide range of energy, and the images quality determination. Through a statistics approach, and using digitalization techniques, one has done an exhaustive study of the radiographic noise. Moreover two techniques close to conventional radiography were explored: neutron radiography and X-ray tomography. Their specificity and interest in the case of calcareous rocks have been shown [fr

Ocean Acidification: Investigation and Presentation of the Effects of Elevated Carbon Dioxide Levels on Seawater Chemistry and Calcareous Organisms

Science.gov (United States)

Buth, Jeffrey M.

2016-01-01

Ocean acidification refers to the process by which seawater absorbs carbon dioxide from the atmosphere, producing aqueous carbonic acid. Acidic conditions increase the solubility of calcium carbonate, threatening corals and other calcareous organisms that depend on it for protective structures. The global nature of ocean acidification and the…

Modified Alizarin Red S-Alcian Blue Staining for Reptilian Skeleton

Directory of Open Access Journals (Sweden)

Muhammad Ja’far Luthfi

2016-04-01

Full Text Available Skeletal staining is an important method in anatomical study. The aim of the research was to develop staining and clearing method of Reptilian skeleton using Alizarin Red S-Alcian Blue. The specimen were eviscerated, fixed, stained, cleared, and keep in glycerine solution. This modified double-staining has successfully stain bone and cartilage of Reptilian.

New biostratigraphic evidence (texanitid ammonites, inoceramids and calcareous nannofossils) for the Upper and the uppermost Coniacian in the Bohemian Cretaceous Basin

Czech Academy of Sciences Publication Activity Database

Svobodová, Andrea; Košťák, M.; Čech, S.; Švábenická, L.

2014-01-01

Roč. 165, č. 4 (2014), s. 577-589 ISSN 1860-1804 Institutional support: RVO:67985831 Keywords : Bohemian Cretaceous Basin * Upper Coniacian * biostratigraphy * ammonites * inoceramids * calcareous nannofossils Subject RIV: DB - Geology ; Mineralogy Impact factor: 0.569, year: 2014

[Histochemical stains for minerals by hematoxylin-lake method].

Science.gov (United States)

Miyagawa, Makoto

2013-04-01

The present study was undertaken to establish the experimental animal model by histological staining methods for minerals. After intraperitoneal injections of minerals, precipitates deposited on the surface of the liver. Liver tissues were fixed in paraformaldehyde, embedded in paraffin and cut into thin sections which were used as minerals containing standard section. Several reagents for histological stains and spectrophotometry for minerals were applied in both test-tube experiments and stainings of tissue sections to test for minerals. Hematoxylin-lake was found of capable of staining minerals in tissue. A simple technique used was described for light microscopic detection of minerals.

Dried gamma-irradiated sewage solids use on calcareous soils: crop yeilds and heavy metals uptake

International Nuclear Information System (INIS)

McCaslin, B.D.; Sivinski, J.S.

1979-01-01

Experiments designed to examine gamma-radiation effects on extractable and plant-available sludge elements and to examine the response of crops to sludge applications on two typical, calcareous soils in New Mexico are summarized. Information has been given indicating that the radiation process of reducing pathogens in sewage products being developed by Sandia Laboratories, does not significantly increase the chemical extractability and plant uptake of a broad range of nutrients and heavy metals. However, radiation treatment greatly facilitates handling sewage for experimentation, because pathogen contamination precautions are eliminated and weed seeds killed. Studies on the effects of sludge irradiation on plant nutrient uptake revealed no concentration increases, agreeing with results presented herein. Sewage products may have special potential for use on calcareous soils, such as in New Mexico. For instance, in New Mexico the lack of potassium in sewage products is not a problem and the naturally high pH of New Mexico soil greatly reduces plant availability of many problem heavy metals. Dramatic increases in yield are typified by the greenhouse and field results presented herein, especially for the known micronutrient deficient soils of New Mexico. Results indicate that sewage sludge is an excellent Zn and Fe fertilizer. More research needs to be done before the economics of sludge application can be calculated and more field information is needed before irradiated sewage products are used indiscriminately

Dried gamma-irradiated sewage solids use on calcareous soils: crop yeilds and heavy metals uptake

Energy Technology Data Exchange (ETDEWEB)

McCaslin, B.D.; Sivinski, J.S.

1979-01-01

Experiments designed to examine gamma-radiation effects on extractable and plant-available sludge elements and to examine the response of crops to sludge applications on two typical, calcareous soils in New Mexico are summarized. Information has been given indicating that the radiation process of reducing pathogens in sewage products being developed by Sandia Laboratories, does not significantly increase the chemical extractability and plant uptake of a broad range of nutrients and heavy metals. However, radiation treatment greatly facilitates handling sewage for experimentation, because pathogen contamination precautions are eliminated and weed seeds killed. Studies on the effects of sludge irradiation on plant nutrient uptake revealed no concentration increases, agreeing with results presented herein. Sewage products may have special potential for use on calcareous soils, such as in New Mexico. For instance, in New Mexico the lack of potassium in sewage products is not a problem and the naturally high pH of New Mexico soil greatly reduces plant availability of many problem heavy metals. Dramatic increases in yield are typified by the greenhouse and field results presented herein, especially for the known micronutrient deficient soils of New Mexico. Results indicate that sewage sludge is an excellent Zn and Fe fertilizer. More research needs to be done before the economics of sludge application can be calculated and more field information is needed before irradiated sewage products are used indiscriminately. (ERB)

Histochemical and ultrastructural studies on the calcareous corpuscles and eggs of Taenia taeniaeformis and Dipylidium caninum.

Science.gov (United States)

Khalifa, Refaat M A; Mazen, Nawal A M; Marawan, Aziza M A; Thabit, Hasnaa T M

2011-08-01

Calcareous corpuscles were noticed by several previous workers to be present in larval and adult cestodes without knowing their function. However, nothing was mentioned in the available literature about distribution of these corpuscles and their density, structure and composition in different parts of the body of different cestodes. Hence, in the present work, a comparative study of their distribution, density, histochemical and ultrastructural characters in different parts of the body was performed in Taenia taeniaeformis and Dipylidium caninum. Due to the presence of the eggs in their gravid segments, their histochemical and ultrastructural characteristics were also studied. It was found that the size, location and density of the calcareous bodies were different in different body parts of the same and the other cestode. Histochemically, the main component of these corpuscles was calcium; while other constituents as polysaccharides, lipids, protrins and mucopolysaccharides were found in their outer rim. Ultrastructurally, they were quite similar in the two studied cestodes and different stages of their development were exhibited. Histochemically, the eggs of both cestodes were similar in their contents. However, some ultrastructural differences have been demonstrated particularly in relation to the size and shape of the rods in the embryophore and the structures in between the embryophore and onchosphere.

Effect of phosphate fertilization on the bioavailability of iron in calcareous soils

Science.gov (United States)

Sánchez-Rodríguez, A. R.; del Campillo, M. C.; Barrón, V.; Torrent, J.

2012-04-01

Iron (Fe) chlorosis is the most important nutritional problem in sensitive plant species cultivated in calcareous soils, its main symptoms being interveinal yellowing in the younger leaves due to lack of chlorophyll and reduced growth. Fe chlorosis has been related to the content of poorly crystalline Fe oxides in soil. The effect of other nutrients, especially phosphorus (P), is, however, a matter of debate. In this work we examined whether fertilization with P alters the availability of Fe to sensitive plants growing in two different Fe chlorosis-inducing calcareous soils. Phosphate at rates of 0 (control), 25, 50, 100 and 200 mg P kg-1 soil was applied to pots where six-months-old olive trees cv. Arbequina were grown. The experiment lasted three years and took place in a shaded house. Chlorophyll concentration in the young leaves was estimated with the SPAD value (using a Minolta apparatus) three-four times per year. Furthermore, shoot length, dry weight of annual pruning and mineral element concentration were measured at the end of each year. In one of the soils, SPAD and leaf Fe concentration decreased with increasing P dose. However in the other soil, SPAD was not correlated with the rate of applied P. In both soils, potassium and zinc concentrations in plants fertilized with P were lower than those in the control plants. This work was funded by the Spanish Ministry of Science and Innovation, Projects: AGL 2005-06691-C02-01 and AGL 2008-05053-C02-02, and the European Regional Development Funds. ARSR acknowledges the finnancial support from the Spanish Ministry of Education as a fellow of the program "Training of University Teachers" (Formación del Profesorado Universitario, AP2008-04716)

On the nature of the calcareous substrate of a ferromanganese crust from the Vityaz Fracture Zone, Central Indian Ridge: Inferences on palaeoceanography

Digital Repository Service at National Institute of Oceanography (India)

Guptha, M.V.S.; Banerjee, R.; Mergulhao, L.

A 15-cm-thick carbonate substrate encrusted with ferromanganese oxides from the Vityaz Fracture Zone, Central Indian Ridge was analysed to reconstruct the palaeoceanography of the region. Based on the calcareous nannoplankton assemblage, an early...

Stool Gram stain

Science.gov (United States)

... stool sample. The Gram stain method is sometimes used to quickly diagnose bacterial infections. How the Test is Performed You will need to collect a stool sample. There are many ways to collect the sample. You can catch the stool on plastic wrap that is loosely placed over the toilet bowl ...

Comparism of Various Staining Techniques in the Diagnosis of ...

African Journals Online (AJOL)

SITWALA COMPUTERS

external intermediate host, usually an animal, in which sporogenesis and oocyst ... the parasite was detected in 111 of the samples stained,. 100(90.0%) of which .... screen stained slide was the auramine fluorochrome stain. The widely used ...

Effect of three Electron Shuttles on Bioreduction of Ferric Iron in two Acidic and Calcareous soils

Directory of Open Access Journals (Sweden)

Setareh Sharifi

2017-01-01

Full Text Available Introduction: Iron cycle is one of the most important biogeochemical processes which affect the availability of iron in soils. Ferric iron oxides are the most abundant forms of iron in soils and sediments. Ferric iron is highly insoluble at circumneutral pH. Present investigations have shown that the structural ferric iron bound in clay minerals is reduced by some microorganisms. Anaerobic bacteria reduce ferric iron which bound to soil clay minerals under anaerobic conditions. They have the ability to use ferric iron as a terminal electron acceptor. Many studies presented that dissimilatory iron reducing bacteria (DIRB mediate the transfer of electrons from small organic molecules like acetate and glucose to various humic materials (electron shuttles which then pass electrons abiotically to ferric iron oxyhydroxide and phyllosilicate minerals. Electron shuttles like AQDS, a tricyclic quinone, increase the rate of iron reduction by iron reducing bacteria on sites of iron oxides and oxyhydroxides. By increasing the rate of bioreduction of ferric iron, the solubility and availability of iron enhanced meaningfully. Royer et al. (2002 showed that bioreduction of hematite (common iron mineral in soils increased more than three times in the presence of AQDS and Shewanella putrefaciens comparedto control treatments. Previous works have mostly used synthetic minerals as electron acceptor in bioreduction process. Furthermore, the effect of quinones as electron acceptor for microorganisms were studied with poorly crystalline ferric iron oxides . The main objective of this study was to study the effect of AQS, humic acid and fulvic acid (as electron shuttle and Shewanella sp. and Pseudomonas aeruginosa, on bioreduction of native ferric iron in two acidic and calcareous soils. Materials and Methods: An experiment was conducted in a completely randomized design with factorial arrangement and three replications in vitro condition. The soil samples collected

Two fern species new to New Hampshire, with comments on the generation of calcareous-like habitat by base-poor rocks

Science.gov (United States)

Scott W. Bailey

2013-01-01

Incidental to other field investigations, I happened upon small populations of two fern species not previously reported from New Hampshire: Pellaea atropurpurea (L.) Link and Dryopteris filix-mas (L.) Schott. Both species are typically associated with calcareous habitats, although limestone and marble are nearly absent from New...

Overview of the Plio-Pleistocene geology of Rhodes, Greece. Lithology, calcareous nannofossil biostratigraphy, and sampling of the Kallithea Bay section

DEFF Research Database (Denmark)

Thomsen, Erik; Rasmussen, Tine Lander; Hastrup, Annette

2005-01-01

-water deposits are assigned to the Lindos Bay clay. Calcareous nannofossil biostratigraphy shows that the age of the marine sequence is early Pleistocene. The brackish water sediments are difficult to date, but they are probably of late Pliocene age. Sixty-nine samples representing all environments were...

Hirschsprung's disease diagnosis: Comparison of immunohistochemical, hematoxilin and eosin staining

Science.gov (United States)

Memarzadeh, Mehrdad; Talebi, Ardeshir; Edalaty, Masod; Hosseinpour, Mehrdad; Vahidi, Nasrin

2009-01-01

Background: The diagnosis of Hirschsprung's disease (HD) is based on the absence of ganglion cells. In hemotoxilin and eosin (H and E) as well as acetylcholine esterase staining there are limitations in the diagnosis of immature ganglion cells in neonates. Methods: In this prospective study, 54 biopsies taken from suspected HD patients (five mucosal specimens and 49 full thickness specimens) were studied. In the laboratory, after preparing sections of paraffin embedded tissues, H and E staining slides were compared with immunohistochemical (IHC) staining including: S100, NSE, CD117, CD56, Cathepsin D, Vimentin, BCL2, GFAP, Synaptophysin and chromogranin. Results: The study revealed 30 negative (absence of ganglion cells) cases (55.5%), 17 positive cases (31.04%) and seven suspected cases (12.9%) of ganglion cells on the H and E staining. On IHC staining with CD56 and Cathepsin D, all of the 17 positive cases detected through H and E, were confirmed for having ganglion cells and out of 30 cases reported negative on H and E staining, 28(93.3%) were reported negative and two (6.7%) positive by IHC staining. Of the seven suspected cases H and E staining), IHC staining detectedganglion cells only in five slides; two remained negative. Conclusions: IHC staining using CD56 and Cathepsin D improved the accuracy of diagnosis in HD when used in addition to H and E staining technique, especially for negative or suspicious slides. PMID:20671847

Evaluation of the potential of indigenous calcareous shale for neutralization and removal of arsenic and heavy metals from acid mine drainage in the Taxco mining area, Mexico.

Science.gov (United States)

Romero, F M; Núñez, L; Gutiérrez, M E; Armienta, M A; Ceniceros-Gómez, A E

2011-02-01

In the Taxco mining area, sulfide mineral oxidation from inactive tailings impoundments and abandoned underground mines has produced acid mine drainage (AMD; pH 2.2-2.9) enriched in dissolved concentrations (mg l⁻¹) sulfate, heavy metals, and arsenic (As): SO₄²⁻ (pH 1470-5454), zinc (Zn; 3.0-859), iron (Fe; pH 5.5-504), copper (Cu; pH 0.7-16.3), cadmium (Cd; pH 0.3-6.7), lead (Pb; pH acid-neutralizing potential of limestone decreases when surfaces of the calcite particles become less reactive as they are progressively coated by metal precipitates. This study constitutes first-stage development of passive-treatment systems for treating AMD in the Taxco mine area using indigenous calcareous shale. This geologic material consists of a mixture of calcite, quartz, muscovite, albite, and montmorillonite. Results of batch leaching test indicate that calcareous shale significantly increased the pH (to values of 6.6-7.4) and decreased heavy metal and As concentrations in treated mine leachates. Calcareous shale had maximum removal efficiency (100%) for As, Pb, Cu, and Fe. The most mobile metals ions were Cd and Zn, and their average percentage removal was 87% and 89%, respectively. In this natural system (calcareous shale), calcite provides a source of alkalinity, whereas the surfaces of quartz and aluminosilicate minerals possibly serve as a preferred locus of deposition for metals, resulting in the neutralizing agent (calcite) beings less rapidly coated with the precipitating metals and therefore able to continue its neutralizing function for a longer time.

Astronomical calibration of upper Campanian–Maastrichtian carbon isotope events and calcareous plankton biostratigraphy in the Indian Ocean (ODP Hole 762C)

DEFF Research Database (Denmark)

Thibault, Nicolas Rudolph; Husson, Dorothée; Harlou, Rikke

2012-01-01

An integrated framework of magnetostratigraphy, calcareous microfossil bio-events, cyclostratigraphy and d13C stratigraphy is established for the upper Campanian–Maastrichtian of ODP Hole 762C (Exmouth Plateau, Northwestern Australian margin). Bulk-carbonate d13C events and nannofossil bio-events...

Environmental controls on the distribution of living (stained) benthic foraminifera on the continental slope in the Campos Basin area (SW Atlantic)

Science.gov (United States)

Yamashita, Cintia; Mello e Sousa, Silvia Helena de; Vicente, Thaisa Marques; Martins, Maria Virgínia; Nagai, Renata Hanae; Frontalini, Fabrizio; Godoi, Sueli Susana; Napolitano, Dante; Burone, Letícia; Carreira, Renato; Figueira, Rubens Cesar Lopes; Taniguchi, Nancy Kazumi; Rezende, Carlos Eduardo de; Koutsoukos, Eduardo Apostolos Machado

2018-05-01

Living (stained) benthic foraminifera from deep-sea stations in the Campos Basin, southeastern Brazilian continental margin, were investigated to understand their distribution patterns and ecology, as well as the oceanographic processes that control foraminiferal distribution. Sediments were collected from 1050 m to 1950 m of water depth during the austral winter of 2003, below the Intermediate Western Boundary Current (IWBC) and the Deep Water Boundary Current (DWBC). Based on statistical analysis, vertical flux of particulate organic matter and the grain size of sediment seem to be the main factors controlling the spatial distribution of benthic foraminifera. The middle slope (1050 m deep) is characterized by relatively high foraminiferal density and a predominance of phytodetritus-feeding foraminifera such as Epistominella exigua and Globocassidulina subglobosa. The occurrence of these species seems to reflect the Brazil Current System (BCS). The above-mentioned currents are associated with the relatively high vertical flux of particulate organic matter and the prevalence of sandy sediments, respectively. The lower slope (between 1350 and 1950 m of water depth) is marked by low foraminiferal density and assemblages composed of Bolivina spp. and Brizalina spp., with low particulate organic matter flux values, muddy sediments, and more refractory organic matter. The distribution of this group seems to be related to episodic fluxes of food particles to the seafloor, which are influenced by the BCS at the surface and are deposited under low deep current activity (DWBC).

No visible dental staining in children treated with doxycycline for suspected Rocky Mountain Spotted Fever.

Science.gov (United States)

Todd, Suzanne R; Dahlgren, F Scott; Traeger, Marc S; Beltrán-Aguilar, Eugenio D; Marianos, Donald W; Hamilton, Charlene; McQuiston, Jennifer H; Regan, Joanna J

2015-05-01

To evaluate whether cosmetically relevant dental effects occurred among children who had received doxycycline for treatment of suspected Rocky Mountain spotted fever (RMSF). Children who lived on an American Indian reservation with high incidence of RMSF were classified as exposed or unexposed to doxycycline, based on medical and pharmacy record abstraction. Licensed, trained dentists examined each child's teeth and evaluated visible staining patterns and enamel hypoplasia. Objective tooth color was evaluated with a spectrophotometer. Fifty-eight children who received an average of 1.8 courses of doxycycline before 8 years of age and who now had exposed permanent teeth erupted were compared with 213 children who had never received doxycycline. No tetracycline-like staining was observed in any of the exposed children's teeth (0/58, 95% CI 0%-5%), and no significant difference in tooth shade (P=.20) or hypoplasia (P=1.0) was found between the 2 groups. This study failed to demonstrate dental staining, enamel hypoplasia, or tooth color differences among children who received short-term courses of doxycycline at <8 years of age. Healthcare provider confidence in use of doxycycline for suspected RMSF in children may be improved by modifying the drug's label. Published by Elsevier Inc.

[Usefulness of sputum Gram staining in community-acquired pneumonia].

Science.gov (United States)

Sato, Tadashi; Aoshima, Masahiro; Ohmagari, Norio; Tada, Hiroshi; Chohnabayashi, Naohiko

2002-07-01

To evaluate the usefulness of sputum gram staining in community-acquired pneumonia (CAP), we reviewed 144 cases requiring hospitalization in the last 4 years. The sensitivity was 75.5%, specificity 68.2%, positive predictive value 74.1%, negative predictive value 69.8%, positive likelihood ratio 2.37, negative likelihood ratio 0.36 and accuracy 72.2% in 97 cases. Both sputum gram staining and culture were performed. Concerning bacterial pneumonia (65 cases), we compared the Gram staining group (n = 33), which received initial antibiotic treatment, based on sputum gram staining with the Empiric group (n = 32) that received antibiotics empirically. The success rates of the initial antibiotic treatment were 87.9% vs. 78.1% (P = 0.473); mean hospitalization periods were 9.67 vs. 11.75 days (P = 0.053); and periods of intravenous therapy were 6.73 vs. 7.91 days (P = 0.044), respectively. As for initial treatment, penicillins were used in the Gram staining group more frequently (P gram staining is useful for the shortening of the treatment period and the appropriate selection of initial antibiotics in bacterial pneumonia. We believe, therefore, that sputum gram staining is indispensable as a diagnostic tool CAP.

Gram staining for the treatment of peritonsillar abscess.

Science.gov (United States)

Takenaka, Yukinori; Takeda, Kazuya; Yoshii, Tadashi; Hashimoto, Michiko; Inohara, Hidenori

2012-01-01

Objective. To examine whether Gram staining can influence the choice of antibiotic for the treatment of peritonsillar abscess. Methods. Between 2005 and 2009, a total of 57 cases of peritonsillar abscess were analyzed with regard to cultured bacteria and Gram staining. Results. Only aerobes were cultured in 16% of cases, and only anaerobes were cultured in 51% of cases. Mixed growth of aerobes and anaerobes was observed in 21% of cases. The cultured bacteria were mainly aerobic Streptococcus, anaerobic Gram-positive cocci, and anaerobic Gram-negative rods. Phagocytosis of bacteria on Gram staining was observed in 9 cases. The bacteria cultured from these cases were aerobic Streptococcus, anaerobic Gram-positive cocci, and anaerobic Gram-negative rods. The sensitivity of Gram staining for the Gram-positive cocci and Gram-negative rods was 90% and 64%, respectively. The specificity of Gram staining for the Gram-positive cocci and Gram-negative rods was 62% and 76%, respectively. Most of the Gram-positive cocci were sensitive to penicillin, but some of anaerobic Gram-negative rods were resistant to penicillin. Conclusion. When Gram staining shows only Gram-positive cocci, penicillin is the treatment of choice. In other cases, antibiotics effective for the penicillin-resistant organisms should be used.

7 CFR 28.441 - Strict Middling Yellow Stained Color.

Science.gov (United States)

2010-01-01

... 7 Agriculture 2 2010-01-01 2010-01-01 false Strict Middling Yellow Stained Color. 28.441 Section... Strict Middling Yellow Stained Color. Strict Middling Yellow Stained Color is color which is deeper than that of Strict Middling Tinged Color. [57 FR 34498, Aug. 5, 1992] ...

CD3 immunohistochemical staining in diagnosis of lymphocytic colitis

DEFF Research Database (Denmark)

Fiehn, Anne-Marie Kanstrup; Engel, Ulla; Holck, Susanne

2016-01-01

and eosin (HE) stainings were available. At the second assessment, a supplementary CD3 immunohistochemical staining was also available. The aim was to evaluate whether a supplementary CD3 would increase the diagnostic agreement among pathologists, and whether a CD3 stain would change the diagnosis based...

The influence of vegetation structure on spider species richness, diversity and community organization in the Apšuciems calcareous fen, Latvia

Energy Technology Data Exchange (ETDEWEB)

Štokmane, M.; Spuņģis, V.

2016-07-01

Calcareous fens are considered to be among the most threatened ecosystems of Europe. They are also one of the most diverse habitats as they support an incredibly rich and diverse range of plant and animal species. However, in spite of their diversity, calcareous fens are still poorly investigated, especially when referring to fen invertebrates, such as spiders. Because spiders are good bioindicators, knowledge of their ecology in rare and threatened habitats is of interest. The aim of this study was to document the composition and diversity of spider species, families and foraging guilds in the ground– and grass–layers of the Apšuciems calcareous fen, and to evaluate the influence of vegetation structure on spider community organization. In summer 2012, we collected ground–dwelling spiders using pitfall traps and grass–dwelling spiders using sweep–netting. A total of 2,937 spider individuals belonging to 19 families and 80 species was collected in the Apšuciems fen. Our results indicate that spider species and families tend to be stratified across the vertical structure of the habitat; the spider composition in the ground stratum differed from that in the grass stratum. On the contrary, however, the spider foraging guild structure between the ground–layer and the grass–layer was similar. Each of the two studied strata presented similar guilds in similar proportions. Our results also showed that spider composition differed considerably between fen parts and that much of this variability could be explained by the architectural properties of the habitat. More diverse vegetation generally supported a higher number of spider species. (Author)

Gram staining in the diagnosis of acute septic arthritis.

Science.gov (United States)

Faraj, A A; Omonbude, O D; Godwin, P

2002-10-01

This study aimed at determining the sensitivity and specificity of Gram staining of synovial fluid as a diagnostic tool in acute septic arthritis. A retrospective study was made of 22 patients who had arthroscopic lavage following a provisional diagnosis of acute septic arthritis of the knee joint. Gram stains and cultures of the knee aspirates were compared with the clinical and laboratory parameters, to evaluate their usefulness in diagnosing acute arthritis. All patients who had septic arthritis had pain, swelling and limitation of movement. CRP was elevated in 90% of patients. The incidence of elevated white blood cell count was higher in the group of patients with a positive Gram stain study (60%) as compared to patients with a negative Gram stain study (33%). Gram staining sensitivity was 45%. Its specificity was however 100%. Gram staining is an unreliable tool in early decision making in patients requiring urgent surgical drainage and washout.

Post-staining electroblotting for efficient and reliable peptide blotting.

Science.gov (United States)

Lee, Der-Yen; Chang, Geen-Dong

2015-01-01

Post-staining electroblotting has been previously described to transfer Coomassie blue-stained proteins from polyacrylamide gel onto polyvinylidene difluoride (PVDF) membranes. Actually, stained peptides can also be efficiently and reliably transferred. Because of selective staining procedures for peptides and increased retention of stained peptides on the membrane, even peptides with molecular masses less than 2 kDa such as bacitracin and granuliberin R are transferred with satisfactory results. For comparison, post-staining electroblotting is about 16-fold more sensitive than the conventional electroblotting for visualization of insulin on the membrane. Therefore, the peptide blots become practicable and more accessible to further applications, e.g., blot overlay detection or immunoblotting analysis. In addition, the efficiency of peptide transfer is favorable for N-terminal sequence analysis. With this method, peptide blotting can be normalized for further analysis such as blot overlay assay, immunoblotting, and N-terminal sequencing for identification of peptide in crude or partially purified samples.

Relationships between nutrient composition of flowers and fruit quality in orange trees grown in calcareous soil

OpenAIRE

Pestana, M.; Beja, P.; Correia, P. J.; Varennes, Amarilis de; Faria, E. A.

2005-01-01

A field experiment was conducted in a commercial orange orchard (Citrus sinensis (L.) Osb. cv. ‘Valencia late’ grafted on Citrange Troyer) established on a calcareous soil in the south of Portugal, to investigate if flower analysis could be used to predict fruit quality. In April 1996, during full bloom, flowers were collected from 20 trees. In March 1997 the fruits were harvested and their quality evaluated. This procedure was repeated every year during three years. Principal Compon...

Phosphate solubilization and promotion of maize growth in a calcareous soil by penicillium oxalicum P4 and aspergillus niger P85

Science.gov (United States)

Alternative tactics for improving phosphorus nutrition in crop production are needed in China and elsewhere as the over-application of phosphatic fertilizers can adversely impact agricultural sustainability. Penicillium oxalicum P4 and Aspergillus niger P85 were isolated from a calcareous soil in C...

Carboniferous calcareous algae and their associations in the San Emiliano and Lois-Ciguera Formations (Prov. León, NW Spain)

NARCIS (Netherlands)

Rácz, L.

1965-01-01

This study of the calcareous algae in the limestone deposits of the two formations (San Emiliano and Lois-Ciguera) in NW Spain is based on field observations and microscopical study. It was possible in the field to divide almost all the limestone members into smaller units on the basis of physical,

Instant live-cell super-resolution imaging of cellular structures by nanoinjection of fluorescent probes.

Science.gov (United States)

Hennig, Simon; van de Linde, Sebastian; Lummer, Martina; Simonis, Matthias; Huser, Thomas; Sauer, Markus

2015-02-11

Labeling internal structures within living cells with standard fluorescent probes is a challenging problem. Here, we introduce a novel intracellular staining method that enables us to carefully control the labeling process and provides instant access to the inner structures of living cells. Using a hollow glass capillary with a diameter of <100 nm, we deliver functionalized fluorescent probes directly into the cells by (di)electrophoretic forces. The label density can be adjusted and traced directly during the staining process by fluorescence microscopy. We demonstrate the potential of this technique by delivering and imaging a range of commercially available cell-permeable and nonpermeable fluorescent probes to cells.

Miocene oceanographic changes of the western equatorial Atlantic (Ceara Rise) based on calcareous dinoflagellate cysts

Science.gov (United States)

Heinrich, S.; Zonneveld, K. A. F.; Willems, H.

2010-09-01

The middle- and upper Miocene represent a time-interval of major changes in palaeoceanography that favoured the cooling of the climate and culminated in the Northern Hemisphere Glaciation (NHG). The basis for the development of the modern deepwater circulation pattern, e.g. thermohaline circulation, was hereby established. Tectonic events played a key role in the progressing Miocene oceanography, such as the narrowing of the Panama gateway (e.g. Duque-Caro 1990) and the possible linked changes in North Atlantic Deep Water formation (Lear et al. 2003). However, the complex interaction between the closing of the Panama Gateway, the development of NADW, and thus the oceanographic progression towards our present day circulation is far from being fully understood. We want to improve the understanding of these processes by establishing a detailed palaeoceanographic reconstruction of the western equatorial Atlantic Ocean on the basis of calcareous dinoflagellate cyst (dinocyst) associations. Within this study, we investigated sediment samples from ODP Site 926A by defining the calcareous dinocyst assemblage. Site 926A is located at the southwestern flank of the Ceara Rise, an area of highest sensitivity to global deep water circulation changes. At about 12 Ma, when NADW production increased (e.g. Wright et al. 1992), we see a distinct increase in the absolute abundances of the calcareous dinocysts. This might be related to enhanced productivity or to better carbonate preservation. At 11.3 Ma, Leonella granifera, a species known to be strongly related to terrestrial input occurs. This could be a signal for the initiation of the Amazon River as a transcontinental river with the development of the Amazon fan (11.8 - 11.3 Ma; Figueiredo et al. 2009) in relation to Andean tectonism. References: Duque-Caro, H. (1990): Neogene stratigraphy, paleoceanography and palebiology in Northwest South America and the evolution of the Panama Seaway. Palaeogeography, Palaeoclimatology

The calcareous mires in South-East Poland are home to two rare Anthracoidea species

Directory of Open Access Journals (Sweden)

Marcin Piątek

2013-12-01

Full Text Available The new collections of Anthracoidea buxbaumii Kukkonen on Carex buxbaumii Wahlenb. and Anthracoidea hostianae B.Lindeb. ex Nannf. on Carex lepidocarpa Tausch recorded in the calcareous mires in South-East Poland are described, illustrated and discussed. The holotype of the latter smut is also re-examined, described and illustrated in detail. Anthracoidea buxbaumii is reported for the second time from Poland on a new host plant. Anthracoidea hostianae is new to Poland. The variability of spore sizes of both species is discussed. The conspecificity of Anthracoidea buxbaumii and A. hostianae suggested in the literature is analyzed.

Western Blot of Stained Proteins from Dried Polyacrylamide Gels

Science.gov (United States)

Gruber, Claudia; Stan-Lotter, Helga

1996-01-01

Western blotting of proteins is customarily performed following their separation on polyacrylamide gels, either prior to staining (1) or, as recently reported, following staining (2). We describe here Western blotting with stained gels, which had been dried and some of which had been stored for years. This procedure permits immunological analysis of proteins, to which antisera may have become available only later, or where the application of newly developed sensitive detection methods is desired. Once rehydration of the gels is achieved, proteins can be-transferred to blotting membranes by any appropriate protocol. Proteins stained with Coomassie Blue have to be detected with a non-chromogenic method, such as the film-based enhanced chemiluminescence (ECL)2) procedure (3). Silver stained proteins, which transfer in the colorless form, may be visualized by any detection method, although, because of the usually very low amounts of proteins, detection by ECL is preferable. Blotting of stained proteins from rehydrated gels is as rapid and as quantitative as from freshly prepared gels, in contrast to blotting from wet stained gels, which requires extensive washing and results in low transfer efficiency (2). Together with a photographic record of the gel pattern, unambiguous identification of immunoreactive proteins from complex mixtures is possible. Some further applications of this work are discussed.

Improved method for combination of immunocytochemistry and Nissl staining.

Science.gov (United States)

Kádár, Andrea; Wittmann, Gábor; Liposits, Zsolt; Fekete, Csaba

2009-10-30

Nissl staining is a widely used method to study morphology and pathology of neural tissue. After standard immunocytochemistry, the Nissl staining labels only the nucleus of neurons and the characteristic staining of the neuronal perikarya is absent or very weak. We hypothesized that the RNA degradation during the immunocytochemical treatment results in the loss of cytoplasmic staining with Nissl-dyes. To test this hypothesis, we used RNAse-free conditions for all steps of immunostaining. To further prevent the RNA-degradation by RNAse contaminations, the RNAse inhibitor heparin was added to all antibody-containing solutions. The efficiency of Nissl staining after standard and RNAse-free double-labeling immunocytochemistry was compared using antibodies against c-Fos and neuropeptide Y (NPY) on tissues of rats refed after 3 days of fasting. After standard immunocytochemistry, the Nissl-staining labeled the nuclei of neurons and only very faintly the cytoplasm of these cells. The RNAse-free treatment did not alter the distribution of immunoreaction signal, but preserved the staining of neuronal perikarya by the Nissl-dyes. In conclusion, the RNAse-free conditions during immunocytochemistry allow the labeling of neuronal perikarya by Nissl-dyes. The described method facilitates the mapping of immunocytochemical signals and makes possible the light microscopic examination of the innervation of neurons identified by their nuclear protein content.

Silver and Cyanine Staining of Oligonucleotides in Polyacrylamide Gel.

Science.gov (United States)

Tang, Weizhong; Zhou, Huafu; Li, Wei

2015-01-01

To explore why some oligonucleotides in denaturing polyacrylamide gel could not be silver-stained, 134 different oligonucleotides were analyzed using denaturing polyacrylamide gel electrophoresis stained with silver and asymmetric cyanine. As a result, we found that the sensitivity of oligos (dA), (dC), (dG) and (dT) to silver staining could be ranged as (dA) > (dG) > (dC) > (dT) from high to low. It was unexpected that oligo (dT) was hard to be silver-stained. Moreover, the silver staining of an oligonucleotide containing base T could be partially or completely inhibited by base T. The inhibition of silver staining by base T was a competitive inhibition which could be affected by the amounts of the argyrophil nucleobase and base T, the cis-distance between the argyrophil nucleobase and base T, and the gel concentration. The changes of the intensity of an oligonucleotide band caused by the changes of DNA base composition were diverse and interesting. The intensity of some oligonucleotide bands would significantly change when the changes of DNA base composition accumulated to a certain extent (usually ≥ 4 nt). The sensitivity of cyanine staining of ≤ 11-nt long oligonucleotides could be enhanced about 250-fold by fixing the gels with methanol fixing solution.

Calcareous microfossil-based orbital cyclostratigraphy in the Arctic Ocean

Science.gov (United States)

Marzen, Rachel; DeNinno, Lauren H.; Cronin, Thomas M.

2016-01-01

Microfaunal and geochemical proxies from marine sediment records from central Arctic Ocean (CAO) submarine ridges suggest a close relationship over the last 550 thousand years (kyr) between orbital-scale climatic oscillations, sea-ice cover, marine biological productivity and other parameters. Multiple paleoclimate proxies record glacial to interglacial cycles. To understand the climate-cryosphere-productivity relationship, we examined the cyclostratigraphy of calcareous microfossils and constructed a composite Arctic Paleoclimate Index (API) "stack" from benthic foraminiferal and ostracode density from 14 sediment cores. Following the hypothesis that API is driven mainly by changes in sea-ice related productivity, the API stack shows the Arctic experienced a series of highly productive interglacials and interstadials every ∼20 kyr. These periods signify minimal ice shelf and sea-ice cover and maximum marine productivity. Rapid transitions in productivity are seen during shifts from interglacial to glacial climate states. Discrepancies between the Arctic API curves and various global climatic, sea-level and ice-volume curves suggest abrupt growth and decay of Arctic ice shelves related to climatic and sea level oscillations.

Maternal and fetal characteristics associated with meconium-stained amniotic fluid

DEFF Research Database (Denmark)

Balchin, Imelda; Whittaker, John C; Lamont, Ronald F

2011-01-01

To estimate the rates of meconium-stained amniotic fluid (AF) and adverse outcome in relation to gestational age and racial group, and to investigate the predictors of meconium-stained AF.......To estimate the rates of meconium-stained amniotic fluid (AF) and adverse outcome in relation to gestational age and racial group, and to investigate the predictors of meconium-stained AF....

Techniques for controlling variability in gram staining of obligate anaerobes.

Science.gov (United States)

Johnson, M J; Thatcher, E; Cox, M E

1995-01-01

Identification of anaerobes recovered from clinical samples is complicated by the fact that certain gram-positive anaerobes routinely stain gram negative; Peptostreptococcus asaccharolyticus, Eubacterium plautii, Clostridium ramosum, Clostridium symbiosum, and Clostridium clostridiiforme are among the nonconformists with regard to conventional Gram-staining procedures. Accurate Gram staining of American Type Culture Collection strains of these anaerobic bacteria is possible by implementing fixing and staining techniques within a gloveless anaerobic chamber. Under anaerobic conditions, gram-positive staining occurred in all test organisms with "quick" fixing techniques with both absolute methanol and formalin. The results support the hypothesis that, when anaerobic bacteria are exposed to oxygen, a breakdown of the physical integrity of the cell wall occurs, introducing Gram stain variability in gram-positive anaerobes. PMID:7538512

Methyl green-pyronin Y staining of nucleic acids: studies on the effects of staining time, dye composition and diffusion rates

DEFF Research Database (Denmark)

Prentø, P; Lyon, H O

2003-01-01

individually, simultaneously and sequentially. The results are presented as color charts approximating the observed staining patterns using a computerized palette. Our results indicate unequivocally that the differential staining is not time-dependent, but that it is dictated by the relative concentrations...

Biot's coefficient as an indicator of strength and porosity reduction: Calcareous sediments from Kerguelen Plateau

DEFF Research Database (Denmark)

Alam, Mohammad Monzurul; Borre, Mai Kirstine; Fabricius, Ida Lykke

2010-01-01

β to fall, even when porosity remains constant. Biot's coefficient correlates with strength-indicating properties: compressional and shear modulus, oedometer modulus, yield strength, strain from direct loading and creep strain. Our data indicate that β may be used for predicting the diagenetic...... Biot's coefficient, β. In calcareous ooze, β is one. Mechanical compaction reduces porosity, but only leads to a minor decrease in β. Recrystallization renders particles smoother, but does not lead to reduction in β unless it gives rise to pore stiffening cementation. Pore stiffening cementation causes...

THE NISSL SUBSTANCE OF LIVING AND FIXED SPINAL GANGLION CELLS

Science.gov (United States)

Deitch, Arline D.; Moses, Montrose J.

1957-01-01

Living chick spinal ganglion neurons grown for 19 to 25 days in vitro were photographed with a color-translating ultraviolet microscope (UV-91) at 265, 287, and 310 mµ. This instrument was unique in permitting rapid accumulation of ultraviolet information with minimal damage to the cell. In the photographs taken at 265 mµ of the living neurons, discrete ultraviolet-absorbing cytoplasmic masses were observed which were found to be virtually unchanged in appearance after formalin fixation. These were identical with the Nissl bodies of the same cells seen after staining with basic dyes. The correlation of ultraviolet absorption, ribonuclease extraction, and staining experiments with acid and basic dyes confirmed the ribonucleoprotein nature of these Nissl bodies in the living and fixed cells. No change in distribution or concentration of ultraviolet-absorbing substance was observed in the first 12 ultraviolet photographs of a neuron, and it is concluded that the cells had not been subjected to significant ultraviolet damage during the period of photography. On the basis of these observations, as well as previous findings with phase contrast microscopy, it is concluded that Nissl bodies preexist in the living neuron as discrete aggregates containing high concentrations of nucleoprotein. PMID:13438929

Port wine stain on a child's face (image)

Science.gov (United States)

Port wine stains are always present at birth. In an infant, they are flat, pink, vascular lesions. Common locations ... may be present anywhere on the body. Port wine stains may appear in association with other syndromes.

Rapid quantification of live/dead lactic acid bacteria in probiotic products using high-sensitivity flow cytometry

Science.gov (United States)

He, Shengbin; Hong, Xinyi; Huang, Tianxun; Zhang, Wenqiang; Zhou, Yingxing; Wu, Lina; Yan, Xiaomei

2017-06-01

A laboratory-built high-sensitivity flow cytometer (HSFCM) was employed for the rapid and accurate detection of lactic acid bacteria (LAB) and their viability in probiotic products. LAB were stained with both the cell membrane-permeable SYTO 9 green-fluorescent nucleic acid stain and the red-fluorescent nucleic acid stain, propidium iodide, which penetrates only bacteria with compromised membranes. The side scatter and dual-color fluorescence signals of single bacteria were detected simultaneously by the HSFCM. Ultra-high temperature processing milk and skim milk spiked with Lactobacillus casei were used as the model systems for the optimization of sample pretreatment and staining. The viable LAB counts measured by the HSFCM were in good agreement with those of the plate count method, and the measured ratios between the live and dead LAB matched well with the theoretical ratios. The established method was successfully applied to the rapid quantification of live/dead LAB in yogurts and fermented milk beverages of different brands. Moreover, the concentration and viability status of LAB in ambient yogurt, a relatively new yet popular milk product in China, are also reported.

Tumor Budding Detection by Immunohistochemical Staining is Not Superior to Hematoxylin and Eosin Staining for Predicting Lymph Node Metastasis in pT1 Colorectal Cancer.

Science.gov (United States)

Okamura, Takuma; Shimada, Yoshifumi; Nogami, Hitoshi; Kameyama, Hitoshi; Kobayashi, Takashi; Kosugi, Shin-ichi; Wakai, Toshifumi; Ajioka, Yoichi

2016-05-01

Tumor budding is recognized as an important risk factor for lymph node metastasis in pT1 colorectal cancer. Immunohistochemical staining for cytokeratin has the potential to improve the objective diagnosis of tumor budding over detection based on hematoxylin and eosin staining. However, it remains unclear whether tumor budding detected by immunohistochemical staining is a significant predictor of lymph node metastasis in pT1 colorectal cancer. The purpose of this study was to clarify the clinical significance of tumor budding detected by immunohistochemical staining in comparison with that detected by hematoxylin and eosin staining. This was a retrospective study. The study was conducted at Niigata University Medical & Dental Hospital. We enrolled 265 patients with pT1 colorectal cancer who underwent surgery with lymph node dissection. Tumor budding was evaluated by both hematoxylin and eosin and immunohistochemical staining with the use of CAM5.2 antibody. Receiver operating characteristic curve analyses were conducted to determine the optimal cutoff values for tumor budding detected by hematoxylin and eosin and CAM5.2 staining. Univariate and multivariate analyses were performed to identify the significant factors for predicting lymph node metastasis. Receiver operating characteristic curve analyses revealed that the cutoff values for tumor budding detected by hematoxylin and eosin and CAM5.2 staining for predicting lymph node metastases were 5 and 8. On multivariate analysis, histopathological differentiation (OR, 6.21; 95% CI, 1.16-33.33; p = 0.03) and tumor budding detected by hematoxylin and eosin staining (OR, 4.91; 95% CI, 1.64-14.66; p = 0.004) were significant predictors for lymph node metastasis; however, tumor budding detected by CAM5.2 staining was not a significant predictor. This study was limited by potential selection bias because surgically resected specimens were collected instead of endoscopically resected specimens. Tumor budding detected by

Calcareous nannofossil and ammonite integrated biostratigraphy across the Jurassic - Cretaceous boundary strata of the Kopanitsa composite section (West Srednogorie Unit, southwest Bulgaria)

Science.gov (United States)

Stoykova, Kristalina; Idakieva, Vyara; Ivanov, Marin; Reháková, Daniela

2018-04-01

Calcareous nannofossil, calpionellid and ammonite occurrences have been directly constrained across the Jurassic-Cretaceous boundary interval in the section of Kopanitsa, SW Bulgaria. This section reveals a continuous and expanded sedimentary record through the Upper Tithonian and Lower Berriasian, besides an excellent calcareous nannofossil and ammonite record. The topmost part of the NJT 16b and the base of NJT 17a nannofossil Subzones correspond to the ammonite Microcanthum / Transitorius Subzone. The major part of the NJT 17a Subzone equates to the Durangites spp. ammonite Zone, whereas the NJT 17b Subzone correlates to the lower part of the B. jacobi ammonite Zone. The NKT nannofossil Zone approximately corresponds to the upper part of the B. jacobi Zone and the NK-1 nannofossil Zone correlates at least to the lowest part of the T. occitanica Zone. The FOs of Nannoconus globulus minor, N. wintereri, N. kamptneri minor, N. steinmannii minor, N. kamptneri kamptneri and N. steinmannii steinmannii are confirmed as reliable bio-horizons for correlations in the Mediterranean Tethys area. The first occurrence of Nannoconus wintereri is regarded as an almost concomitant event with the first occurrence of Berriasella jacobi. We suggest it could be the most useful nannofossil proxy for approximating the base of the B. jacobi Zone. Rare, but relatively well preserved calpionellids and calcareous dinoflagellates together with microfacies analysis were used additionally for stratigraphical and palaeoenvironmental interpretations. The investigated sediments are typical for the steep slope of a steepened ramp, with accumulation of hemipelagic and gravitational deposits.

MANAJEMEN SARANA DAN PRASARANA PENDIDIKAN DI STAIN PAMEKASAN

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M. Muchlis Solichin

2011-07-01

Full Text Available Mediums management and pre-mediums represent an absolute done in an higher education institute, because Mediums and premediums in education management represent the absolut condition in the effort to reach the target which is expected. Thereby, Every the education organizer have to pay attention and conscripting the mind and energy to carry out education management that is professional and fulfill Standard National Education ( SNP. This Research copes to comprehend the mediums and pre-mediums management of education in STAIN Pamekasan, because during this time of mediums and basic mediums management are not yet showing its idealitas. This research is focussed at; a How mediums and pre-mediums menegement in STAIN Pamekasan ?,and b what Factors influencing mediums and pre-mediums management in STAIN Pamekasan ?. This research uses the qualitative type by using observation, interview, and documentation method. Based the rearch done, to be expressed that the first of STAIN Pamekasan conduct mediums and pre-mediums manegement still have the centralization character of top down, either in the case of planning, organizational, observation, and assessment of mediums and pre-mediums management owned, second in some cases of STAIN Pamekasan do not yet manage the mediums and pre-mediums management because they are caused by factor is its lack of management professionalism, either when doing the planning, organizational, treatment and observation or evaluation. Based the matter above, hence, suggested that STAIN Pamekasan carry out the mediums and pre-mediums management of education professionally.

Heavy metal accumulation by poplar in calcareous soil with various degrees of multi-metal contamination: implications for phytoextraction and phytostabilization.

Science.gov (United States)

Hu, Yahu; Nan, Zhongren; Su, Jieqiong; Wang, Ning

2013-10-01

The object of this study was to assess the capacity of Populus alba L. var. pyramidalis Bunge for phytoremediation of heavy metals on calcareous soils contaminated with multiple metals. In a pot culture experiment, a multi-metal-contaminated calcareous soil was mixed at different ratios with an uncontaminated, but otherwise similar soil, to establish a gradient of soil metal contamination levels. In a field experiment, poplars with different stand ages (3, 5, and 7 years) were sampled randomly in a wastewater-irrigated field. The concentrations of cadmium (Cd), Cu, lead (Pb), and zinc (Zn) in the poplar tissues and soil were determined. The accumulation of Cd and Zn was greatest in the leaves of P. pyramidalis, while Cu and Pb mainly accumulated in the roots. In the pot experiment, the highest tissue concentrations of Cd (40.76 mg kg(-1)), Cu (8.21 mg kg(-1)), Pb (41.62 mg kg(-1)), and Zn (696 mg kg(-1)) were all noted in the multi-metal-contaminated soil. Although extremely high levels of Cd and Zn accumulated in the leaves, phytoextraction using P. pyramidalis may take at least 24 and 16 years for Cd and Zn, respectively. The foliar concentrations of Cu and Pb were always within the normal ranges and were never higher than 8 and 5 mg kg(-1), respectively. The field experiment also revealed that the concentrations of all four metals in the bark were significantly higher than that in the wood. In addition, the tissue metal concentrations, together with the NH4NO3-extractable concentrations of metals in the root zone, decreased as the stand age increased. P. pyramidalis is suitable for phytostabilization of calcareous soils contaminated with multiple metals, but collection of the litter fall would be necessary due to the relatively high foliar concentrations of Cd and Zn.

The influence of vegetation structure on spider species richness, diversity and community organization in the Apšuciems calcareous fen, Latvia

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Štokmane, M.

2016-07-01

Full Text Available Calcareous fens are considered to be among the most threatened ecosystems of Europe. They are also one of the most diverse habitats as they support an incredibly rich and diverse range of plant and animal species. However, in spite of their diversity, calcareous fens are still poorly investigated, especially when referring to fen invertebrates, such as spiders. Because spiders are good bioindicators, knowledge of their ecology in rare and threatened habitats is of interest. The aim of this study was to document the composition and diversity of spider species, families and foraging guilds in the ground– and grass–layers of the Apšuciems calcareous fen, and to evaluate the influence of vegetation structure on spider community organization. In summer 2012, we collected ground–dwelling spiders using pitfall traps and grass–dwelling spiders using sweep–netting. A total of 2,937 spider individuals belonging to 19 families and 80 species was collected in the Apšuciems fen. Our results indicate that spider species and families tend to be stratified across the vertical structure of the habitat; the spider composition in the ground stratum differed from that in the grass stratum. On the contrary, however, the spider foraging guild structure between the ground–layer and the grass–layer was similar. Each of the two studied strata presented similar guilds in similar proportions. Our results also showed that spider composition differed considerably between fen parts and that much of this variability could be explained by the architectural properties of the habitat. More diverse vegetation generally supported a higher number of spider species.

Preoperative digital planning versus postoperative outcomes in total hip arthroplasty using a calcar-guided short stem: frequent valgization can be avoided.

Science.gov (United States)

Kutzner, Karl Philipp; Pfeil, Joachim; Kovacevic, Mark Predrag

2017-07-01

Modern total hip arthroplasty is largely dependent on the successful preservation of hip geometry. Thus, a successful implementation of the preoperative planning is of great importance. The present study evaluates the accuracy of anatomic hip reconstruction predicted by 2D digital planning using a calcar-guided short stem of the newest generation. A calcar-guided short stem was implanted in 109 patients in combination with a cementless cup using the modified anterolateral approach. Preoperative digital planning was performed including implant size, caput-collum-diaphyseal angle, offset, and leg length using mediCAD II software. A coordinate system and individual scale factors were implemented. Postoperative outcome was evaluated accordingly and was compared to the planning. Intraoperatively used stem sizes were within one unit of the planned stem sizes. The postoperative stem alignment showed a minor and insignificant (p = 0.159) mean valgization of 0.5° (SD 3.79°) compared to the planned caput-collum-diaphyseal angles. Compared to the planning, mean femoral offset gained 2.18 (SD 4.24) mm, while acetabular offset was reduced by 0.78 (SD 4.36) mm during implantation resulting in an increased global offset of 1.40 (SD 5.51) mm (p = 0.0094). Postoperative femoroacetabular height increased by a mean of 5.00 (SD 5.98) mm (p planning in calcar-guided short-stem total hip arthroplasty assures a satisfying implementation of the intended anatomy. Valgization, which has been frequently observed in previous short-stem designs, negatively affecting offset, can be avoided. However, surgeons have to be aware of a possible leg lengthening.

Mapping stain distribution in pathology slides using whole slide imaging

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Fang-Cheng Yeh

2014-01-01

Full Text Available Background: Whole slide imaging (WSI offers a novel approach to digitize and review pathology slides, but the voluminous data generated by this technology demand new computational methods for image analysis. Materials and Methods: In this study, we report a method that recognizes stains in WSI data and uses kernel density estimator to calculate the stain density across the digitized pathology slides. The validation study was conducted using a rat model of acute cardiac allograft rejection and another rat model of heart ischemia/reperfusion injury. Immunohistochemistry (IHC was conducted to label ED1 + macrophages in the tissue sections and the stained slides were digitized by a whole slide scanner. The whole slide images were tessellated to enable parallel processing. Pixel-wise stain classification was conducted to classify the IHC stains from those of the background and the density distribution of the identified IHC stains was then calculated by the kernel density estimator. Results: The regression analysis showed a correlation coefficient of 0.8961 between the number of IHC stains counted by our stain recognition algorithm and that by the manual counting, suggesting that our stain recognition algorithm was in good agreement with the manual counting. The density distribution of the IHC stains showed a consistent pattern with those of the cellular magnetic resonance (MR images that detected macrophages labeled by ultrasmall superparamagnetic iron-oxide or micron-sized iron-oxide particles. Conclusions: Our method provides a new imaging modality to facilitate clinical diagnosis. It also provides a way to validate/correlate cellular MRI data used for tracking immune-cell infiltration in cardiac transplant rejection and cardiac ischemic injury.

Efficacy test of a toothpaste in reducing extrinsic dental stain

Science.gov (United States)

Agustanti, A.; Ramadhani, S. A.; Adiatman, M.; Rahardjo, A.; Callea, M.; Yavuz, I.; Maharani, D. A.

2017-08-01

This clinical trial compared the external dental stain reduction achieved by tested toothpaste versus placebo in adult patients. In this double-blind, parallel, randomised clinical trial, 45 female volunteers with a mean age of 20 years old were included. All study subjects front teeth were topically applicated with Silver Diamine Fluoride (SDF) to create external dental stains. Subjects were randomized into test (n=22) and control (n=23) groups. Toothpastes were used for two days to analyse the effects of removing external stains on the labial surfaces of all anterior teeth. VITA Easyshade Advance 4.0 was used to measure dental extrinsic stains changes. The analysis showed statistically significant efficacy of the tested toothpaste in reducing external dental stain caused by SDF, comparing to the placebo toothpaste, after one and two days of usage. The tested toothpaste was effective in reducing dental stain.

Factors influencing extract of Hibiscus sabdariffa staining of rat testes.

Science.gov (United States)

Bassey, R B; Bakare, A A; Peter, A I; Oremosu, A A; Osinubi, A A

2012-08-01

Some plant extracts can be used in biology and medicine to reveal or identify cellular components and tissues. We investigated the effects of time and concentration on staining of histological sections of rat testes by an acidified extract of Hibiscus sabdariffa. An ethanolic extract of H. sabdariffa was diluted using 1% acetic acid in 70% ethanol to stain histological sections of testes at concentrations of 0.2, 0.1 and 0.05 g/ml for 5, 10, 15, 30, 45 and 60 min. The sections of testes were stained deep red. The staining efficiency of H. sabdariffa was greater at a high concentration and required less time to achieve optimal staining. H. sabdariffa is a strongly basic dye that can be used for various diagnostic purposes. Staining time and concentration must be considered to achieve optimal results.

4Pi-confocal microscopy of live cells

Science.gov (United States)

Bahlmann, Karsten; Jakobs, Stefan; Hell, Stefan W.

2002-06-01

By coherently adding the spherical wavefronts of two opposing lenses, two-photon excitation 4Pi-confocal fluorescence microscopy has achieved three-dimensional imaging with an axial resolution 3-7 times better than confocal microscopy. So far this improvement was possible only in glycerol-mounted, fixed cells. Here we report 4Pi-confocal microscopy of watery objects and its application to the imaging of live cells. Water immersion 4Pi-confocal microscopy of membrane stained live Escherichia coli bacteria attains a 4.3 fold better axial resolution as compared to the best water immersion confocal microscope. The resolution enhancement results into a vastly improved three-dimensional representation of the bacteria. The first images of live biological samples with an all-directional resolution in the 190-280 nm range are presented here, thus establishing a new resolution benchmark in live cell microscopy.

Utility of Gram staining for diagnosis of Malassezia folliculitis.

Science.gov (United States)

Tu, Wei-Ting; Chin, Szu-Ying; Chou, Chia-Lun; Hsu, Che-Yuan; Chen, Yu-Tsung; Liu, Donald; Lee, Woan-Ruoh; Shih, Yi-Hsien

2018-02-01

Malassezia folliculitis (MalF) mimics acne vulgaris and bacterial folliculitis in clinical presentations. The role of Gram staining in rapid diagnosis of MalF has not been well studied. In our study, 32 patients were included to investigate the utility of Gram staining for MalF diagnosis. The final diagnoses of MalF were determined according to clinical presentation, pathological result and treatment response to antifungal agents. Our results show that the sensitivity and specificity of Gram staining are 84.6% and 100%, respectively. In conclusion, Gram staining is a rapid, non-invasive, sensitive and specific method for MalF diagnosis. © 2017 Japanese Dermatological Association.

Hirschsprung′s disease diagnosis: Comparison of immunohistochemical, hematoxilin and eosin staining

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Memarzadeh Mehrdad

2009-01-01

Full Text Available Background : The diagnosis of Hirschsprung′s disease (HD is based on the absence of ganglion cells. In hemotoxilin and eosin (H and E as well as acetylcholine esterase staining there are limitations in the diagnosis of immature ganglion cells in neonates. Methods : In this prospective study, 54 biopsies taken from suspected HD patients (five mucosal specimens and 49 full thickness specimens were studied. In the laboratory, after preparing sections of paraffin embedded tissues, H and E staining slides were compared with immunohistochemical (IHC staining including: S100, NSE, CD117, CD56, Cathepsin D, Vimentin, BCL2, GFAP, Synaptophysin and chromogranin. Results : The study revealed 30 negative (absence of ganglion cells cases (55.5%, 17 positive cases (31.04% and seven suspected cases (12.9% of ganglion cells on the H and E staining. On IHC staining with CD56 and Cathepsin D, all of the 17 positive cases detected through H and E, were confirmed for having ganglion cells and out of 30 cases reported negative on H and E staining, 28(93.3% were reported negative and two (6.7% positive by IHC staining. Of the seven suspected cases H and E staining, IHC staining detectedganglion cells only in five slides; two remained negative. Conclusions : IHC staining using CD56 and Cathepsin D improved the accuracy of diagnosis in HD when used in addition to H and E staining technique, especially for negative or suspicious slides.

Alcian blue-stained particles in a eutrophic lake

DEFF Research Database (Denmark)

Worm, J.; Søndergaard, Morten

1998-01-01

We used a neutral solution of Alcian Blue to stain transparent particles in eutrophic Lake Frederiksborg Slotss0, Denmark. Alcian Blue-stained particles (ABSP) appeared to be similar to the so-called transparent exopolymer particles (TEP) identified with an acidic solution of Alcian Blue. Our...

CALCAREOUS NANNOFOSSIL BIOSTRATIGRAPHY OF UPPER CALLOVIAN-LOWER BERRIASIAN SUCCESSIONS FROM THE SOUTHERN ALPS, NORTH ITALY

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CRISTINA EMANUELA CASELLATO

2010-11-01

Full Text Available Calcareous nannofossil biostratigraphy was investigated in uppermost Callovian-lower Berriasian sections from Southern Alps, previously detected through magnetostratigraphy, in order to achieve an integrated stratigraphic framework valid at low latitudes. Nannofossil investigations were carried out on smear slides and ultra-thin sections, revealing generally scarce to common abundances and poor-moderate preservation of nannofloras. An exhaustive taxonomic revision was performed to unambiguously separate forms which are transitional between two species and better delineate rapidly evolving groups. Four new species have been described: Zeugrhabdotus fluxus, Nannoconus puer, Nannoconus erbae, Hexalithus geometricus. Particular attention was paid to taxonomical aspects of primitive nannoconids, appearing and evolving across the early-late Tithonian transition and the Tithonian/Berriasian boundary intervals; the revision was also verified at DSDP Site 534A from Atlantic Ocean. Fourty-eight nannofossil bioevents were detected and the results help to increase potential stratigraphic resolution in this interval. Thirty-seven nannofossil bioevents in the upper Kimmeridgian-lower Berriasian interval have been directly correlated to magnetostratigraphy (CM22-CM17 revealing a systematically older stratigraphic occurrence of these taxa than previously reported. A revised and partly new Tethyan calcareous nannofossil zonation scheme is here proposed for the uppermost Callovian-lower Berriasian interval. It consists of seven bio-zones and eight subzones based on thirty-one bioevents, thirteen of them related to dissolution resistant taxa assuring highest reproducibility even in sections with high diagenetic overprint. The proposed biostratigraphic scheme gives higher resolution than previous zonations, especially for the Callovian-Kimmeridgian interval, where no biozonation was available for the Tethyan Realm. 

A Novel Contrast Stain for the Rapid Diagnosis of Pityriasis Versicolor: A Comparison of Chicago Sky Blue 6B Stain, Potassium Hydroxide Mount and Culture.

Science.gov (United States)

Lodha, Nikita; Poojary, Shital Amin

2015-01-01

The mycological study of pityriasis versicolor is usually done by potassium hydroxide (KOH) mount and culture. However, KOH mount lacks a color contrast and requires a trained eye to interpret, while culture is difficult to perform, time consuming and has low sensitivity. Chicago Sky Blue 6B (CSB) is a new contrast stain that highlights the fungal hyphae and spores, blue against a purplish background. This study was done to compare the utility of a novel contrast stain (CSB stain) with KOH mount and culture. Skin scrapings from the lesions of 100 clinically diagnosed cases of P. versicolor were subjected to (1) KOH mount and CSB stain for direct microscopic examination and (2) culture using Sabouraud's dextrose agar. The statistical analysis of CSB stain and culture was done using KOH mount as the reference method, as it is the most commonly performed and practical diagnostic test available for P. versicolor. An interrater reliability analysis using the Cohen's Kappa statistic was performed to determine consistency (agreement) among the different modalities. Direct microscopy with CSB stain, KOH mount and mycological culture showed positive results in 98 (98%), 92 (92%) and 56 (56%) patients, respectively. Using KOH mount as the reference method, CSB stain had a sensitivity of 100% which was significantly higher than culture (60.9%). Statistically significant fair agreement was found between CSB stain and KOH mount (94% with κ=0.38, P < 0.001). Negligible agreement was found between CSB stain and culture (66%, κ=0.199, P = 0.001) as well as between KOH mount and culture (64%, κ=0.051, P = 0.107). CSB staining of skin scrapings is the most sensitive method for the diagnosis of pityriasis versicolor. Due to the distinct contrast provided by CSB, it is easy to perform, rapid and qualitatively superior to KOH mount.

A useful single-solution polychrome stain for plant material...Brook Cyte-Chrome I.

Science.gov (United States)

Stanley L Krugman; Julia F. Littlefield

1968-01-01

Fresh and chemically fixed sectioned plant material can be quickly stained by applying a Brook Cyte Chrome I polychrome stain. Staining time averaged only about 10 minutes. And exact timing of staining and de-staining is not as critical as with most of the commonly used stains. The overall quality is comparable to that of the traditional stains.

Validation of water sorption-based clay prediction models for calcareous soils

DEFF Research Database (Denmark)

Arthur, Emmanuel; Razzaghi, Fatemeh; Moosavi, Ali

2017-01-01

on prediction accuracy. The soils had clay content ranging from 9 to 61% and CaCO3 from 24 to 97%. The three water sorption models considered showed a reasonably fair prediction of the clay content from water sorption at 28% relative humidity (RMSE and ME values ranging from 10.6 to 12.1 and −8.1 to −4......Soil particle size distribution (PSD), particularly the active clay fraction, mediates soil engineering, agronomic and environmental functions. The tedious and costly nature of traditional methods of determining PSD prompted the development of water sorption-based models for determining the clay...... fraction. The applicability of such models to semi-arid soils with significant amounts of calcium carbonate and/or gypsum is unknown. The objective of this study was to validate three water sorption-based clay prediction models for 30 calcareous soils from Iran and identify the effect of CaCO3...

Nuclear staining with alum hematoxylin.

Science.gov (United States)

Llewellyn, B D

2009-08-01

The hematoxylin and eosin stain is the most common method used in anatomic pathology, yet it is a method about which technologists ask numerous questions. Hematoxylin is a natural dye obtained from a tree originally found in Central America, and is easily converted into the dye hematein. This dye forms coordination compounds with mordant metals, such as aluminum, and the resulting lake attaches to cell nuclei. Regressive formulations contain a higher concentration of dye than progressive formulations and may also contain a lower concentration of mordant. The presence of an acid increases the life of the solution and in progressive solutions may also affect selectivity of staining. An appendix lists more than 60 hemalum formulations and the ratio of dye to mordant for each.

Evolution of the soil humus status on the calcareous Neogene clay dumps of the Sokolov quarry complex in the Czech Republic

Czech Academy of Sciences Publication Activity Database

Abakumov, E.V.; Frouz, Jan

2009-01-01

Roč. 42, č. 7 (2009), s. 718-724 ISSN 1064-2293 Grant - others:Russian Foundation for Basic Research(XE) 08-04-01128 Institutional research plan: CEZ:AV0Z60660521 Keywords : soil humus status * calcareous Neogene clay dumps * Sokolov quarry complex Subject RIV: EH - Ecology, Behaviour Impact factor: 0.222, year: 2009

Stained Glass and Flu

Centers for Disease Control (CDC) Podcasts

2017-02-01

Dr. Robert Webster, an Emeritus member of the Department of Infectious Diseases at St. Jude Children's Research Hospital, discusses his cover art story on stained glass and influenza.  Created: 2/1/2017 by National Center for Emerging and Zoonotic Infectious Diseases (NCEZID).   Date Released: 2/1/2017.

Potential of Brassic rapa, Cannabis sativa, Helianthus annuus and Zea mays for phytoextraction of heavy metals from calcareous dredged sediment derived soils.

Science.gov (United States)

Meers, E; Ruttens, A; Hopgood, M; Lesage, E; Tack, F M G

2005-10-01

Remediation of soil pollution is one of the many current environmental challenges. Anthropogenic activity has resulted in the contamination of extended areas of land, the remediation of which is both invasive and expensive by conventional means. Phytoextraction of heavy metals from contaminated soils has the prospect of being a more economic in situ alternative. In addition, phytoextraction targets ecotoxicologically the most relevant soil fraction of these metals, i.e. the bioavailable fraction. Greenhouse experiments were carried out to evaluate the potential of four high biomass crop species in their potential for phytoextraction of heavy metals, with or without with the use of soil amendments (EDTA or EDDS). A calcareous dredged sediment derived surface soil, with high organic matter and clay content and moderate levels of heavy metal pollution, was used in the experiments. No growth depression was observed in EDTA or EDDS treated pots in comparison to untreated controls. Metal accumulation was considered to be low for phytoextraction purposes, despite the use of chelating agents. The low observed shoot concentrations of heavy metals were attributed to the low phytoavailability of heavy metals in this particular soil substrate. The mobilising effects induced by EDTA in the soil were found to be too long-lived for application as a soil amendment in phytoextraction. Although EDDS was found to be more biodegradable, higher effect half lives were observed than reported in literature or observed in previous experiments. These findings caution against the use of any amendment, biodegradable or otherwise, without proper investigation of its effects and the longevity thereof.

Calcareous nannofossil and ammonite integrated biostratigraphy across the Jurassic – Cretaceous boundary strata of the Kopanitsa composite section (West Srednogorie Unit, southwest Bulgaria

Directory of Open Access Journals (Sweden)

Stoykova Kristalina

2018-04-01

Full Text Available Calcareous nannofossil, calpionellid and ammonite occurrences have been directly constrained across the Jurassic–Cretaceous boundary interval in the section of Kopanitsa, SW Bulgaria. This section reveals a continuous and expanded sedimentary record through the Upper Tithonian and Lower Berriasian, besides an excellent calcareous nannofossil and ammonite record. The topmost part of the NJT 16b and the base of NJT 17a nannofossil Subzones correspond to the ammonite Microcanthum / Transitorius Subzone. The major part of the NJT 17a Subzone equates to the Durangites spp. ammonite Zone, whereas the NJT 17b Subzone correlates to the lower part of the B. jacobi ammonite Zone. The NKT nannofossil Zone approximately corresponds to the upper part of the B. jacobi Zone and the NK-1 nannofossil Zone correlates at least to the lowest part of the T. occitanica Zone. The FOs of Nannoconus globulus minor, N. wintereri, N. kamptneri minor, N. steinmannii minor, N. kamptneri kamptneri and N. steinmannii steinmannii are confirmed as reliable bio-horizons for correlations in the Mediterranean Tethys area. The first occurrence of Nannoconus wintereri is regarded as an almost concomitant event with the first occurrence of Berriasella jacobi. We suggest it could be the most useful nannofossil proxy for approximating the base of the B. jacobi Zone. Rare, but relatively well preserved calpionellids and calcareous dinoflagellates together with microfacies analysis were used additionally for stratigraphical and palaeoenvironmental interpretations. The investigated sediments are typical for the steep slope of a steepened ramp, with accumulation of hemipelagic and gravitational deposits.

Clinical utility of an automated instrument for gram staining single slides.

Science.gov (United States)

Baron, Ellen Jo; Mix, Samantha; Moradi, Wais

2010-06-01

Gram stains of 87 different clinical samples were prepared by the laboratory's conventional methods (automated or manual) and by a new single-slide-type automated staining instrument, GG&B AGS-1000. Gram stains from either heat- or methanol-fixed slides stained with the new instrument were easy to interpret, and results were essentially the same as those from the methanol-fixed slides prepared as a part of the routine workflow. This instrument is well suited to a rapid-response laboratory where Gram stain requests are commonly received on a stat basis.

Chromosome-specific staining to detect genetic rearrangements

Energy Technology Data Exchange (ETDEWEB)

Gray, Joe W.; Pinkel, Daniel; Tkachuk, Douglas; Westbrook, Carol

2013-04-09

Methods and compositions for staining based upon nucleic acid sequence that employ nucleic acid probes are provided. Said methods produce staining patterns that can be tailored for specific cytogenetic analyzes. Said probes are appropriate for in situ hybridization and stain both interphase and metaphase chromosomal material with reliable signals. The nucleic acid probes are typically of a complexity greater than 50 kb, the complexity depending upon the cytogenetic application. Methods and reagents are provided for the detection of genetic rearrangements. Probes and test kits are provided for use in detecting genetic rearrangements, particularly for use in tumor cytogenetics, in the detection of disease related loci, specifically cancer, such as chronic myelogenous leukemia (CML) and for biological dosimetry. Methods and reagents are described for cytogenetic research, for the differentiation of cytogenetically similar but genetically different diseases, and for many prognostic and diagnostic applications.

News from the Biological Stain Commission No. 11

DEFF Research Database (Denmark)

Lyon, H O; Horobin, R W

2012-01-01

The 11th issue of News from the Biological Stain Commission (BSC) provides our first impressions of the REACH and ECHA programs. We intend to give a more thorough account of what these important programs actually mean in later editions of News from the Biological Stain Commission. Under the heading...

A novel contrast stain for the rapid diagnosis of pityriasis versicolor: A comparison of Chicago Sky Blue 6B stain, potassium hydroxide mount and culture

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Nikita Lodha

2015-01-01

Full Text Available Background: The mycological study of pityriasis versicolor is usually done by potassium hydroxide (KOH mount and culture. However, KOH mount lacks a color contrast and requires a trained eye to interpret, while culture is difficult to perform, time consuming and has low sensitivity. Chicago Sky Blue 6B (CSB is a new contrast stain that highlights the fungal hyphae and spores, blue against a purplish background. Aims and Objectives: This study was done to compare the utility of a novel contrast stain (CSB stain with KOH mount and culture. Materials and Methods: Skin scrapings from the lesions of 100 clinically diagnosed cases of P. versicolor were subjected to (1 KOH mount and CSB stain for direct microscopic examination and (2 culture using Sabouraud′s dextrose agar. The statistical analysis of CSB stain and culture was done using KOH mount as the reference method, as it is the most commonly performed and practical diagnostic test available for P. versicolor. An interrater reliability analysis using the Cohen′s Kappa statistic was performed to determine consistency (agreement among the different modalities. Observations and Results: Direct microscopy with CSB stain, KOH mount and mycological culture showed positive results in 98 (98%, 92 (92% and 56 (56% patients, respectively. Using KOH mount as the reference method, CSB stain had a sensitivity of 100% which was significantly higher than culture (60.9%. Statistically significant fair agreement was found between CSB stain and KOH mount (94% with κ=0.38, P < 0.001. Negligible agreement was found between CSB stain and culture (66%, κ=0.199, P = 0.001 as well as between KOH mount and culture (64%, κ=0.051, P = 0.107. Conclusion: CSB staining of skin scrapings is the most sensitive method for the diagnosis of pityriasis versicolor. Due to the distinct contrast provided by CSB, it is easy to perform, rapid and qualitatively superior to KOH mount.

Fractionation of applied 32P labeled TSP in calcareous soils

International Nuclear Information System (INIS)

Asfary, A.F.; Al-Merey, R.; Al-Hameish, M.

2005-01-01

Calcareous dark brown red soil (calcixerollic xerochrept) from northern Syria was used in a pot experiment to study the fate of triple super phosphate fertilizer (TSP) with and without a crop (Local durum wheat (Triticum turgidum L. group durum (Desf)) c v. Bohouth). The soil received 17μg P/g soil of 32 P labeled TSP, and samples were collected from soils and plants at successive dates. Soil inorganic P was ≅94% of total soil P, with only 50-80% being soluble. Calcium phosphate compounds were the dominant fraction (≤68%) of the soluble inorganic soil P followed by occluded iron phosphate (≤48%) and all other fractions were ≤9%. Isotopic measurements showed that ≅ 50% of fertilizer P was nonexchangeable within 2 days, and TSP values in each fraction of soil inorganic P fluctuated in relatively similar proportions to the concentrations of fractions in soil. Available P (soil and TSP) in cropped soil was more than that in the uncropped soil, and plants had no effect on the distribution of P from fertilizer amongst the different P fractions. (author)

Provenance of Holocene calcareous beach-dune sediments, Western Eyre Peninsula, Great Australian Bight, Australia

Science.gov (United States)

James, Noel P.; Bone, Yvonne

2017-07-01

Much of western Eyre Peninsula adjacent to the Great Australian Bight is veneered with siliceous and calcareous Quaternary aeolian dunes. The lengthy coastline adjacent to this cool-water carbonate factory is a series of Precambrian crystalline bedrock-Pleistocene aeolianite headlands that separate many long, sweeping, Holocene carbonate sand beaches and their backbeach dunes. Incessant SW waves, rolling swells, and onshore winds have resulted in > 350 km of semi-continuous calcareous strandline aeolian sands. The sediment is composed of quartz grains, Cenozoic limestone clasts, and relict particles (extraclasts) but the deposits are overwhelmingly dominated by contemporaneous biofragments from offshore. These skeletal grains are, in order of relative abundance, molluscs > benthic foraminifers > coralline algae > bryozoans, and echinoids. Benthic foraminifers are mostly small (especially rotaliids and miliolids) but the large relict symbiont-bearing protistMarginopora vertebralis, which grew in the latter stages of MIS 2, is present locally. There are no significant onshore-offshore trends within individual beach-dune complexes. There is, however, a prominent spatial partitioning, with extraclast-rich sediments in the north and biofragment-rich deposits in the south. This areal trend is interpreted to result from more active seafloor carbonate production in the south, an area of conspicuous seasonal nutrient upwelling and profound nektic and benthic biological productivity. The overall system is strikingly similar to Holocene and Pleistocene aeolianites along the inboard margin of the Lacepede Shelf and Bonney Coast some 500 km to the southeast, implying a potential universality to the nature of cool-water carbonate aeolianite deposition. The composition of these cool-water aeolianites is more multifaceted than those formed on warm-water, shallow flat-topped platforms, largely because of the comparatively deep, temperate shelf, the high-energy wave and swell

Effect of Sulfur Application on Spinach Phytoremedaiton Process of Cadmium in Contaminated Calcareous Soils

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Ali Kasraian

2012-07-01

Full Text Available Recently, cadmium (Cd concentration has increased in croplands through sewage sludge and phosphorous fertilizers application. On the other hand, some special methods, like phytoremedation, were introduced in order to decrease soil contamination hazard. Calcium carbonate plays an important role in Cd solubility in highly calcareous soils. Sulfurs oxidation, by dissolving Cd carbonate fraction, may improve phytoremediation efficiency. An experiment was conducted to study the effects of S application (equivalent to 0, 2, 4 and 6 Mg S ha-1 on Diethylene Triamine Pentaacetic Acid  (DTPA extractable Cd and also on Cd uptake and extraction by spinach (Spinacea oleracea L. in calcareous soils which were contaminated by 40mg Cd kg-1. To ensure biological S oxidation, all S-treated samples were inoculated by Thiobacillus spp. and incubated for 50 days. The soil pH, EC and soluble sulfate were affected by S application and it clearly showed that S oxidation process was occurred in Cd treated soils. The most significant change for pH and sulfate were observed at 4 Mg S ha-1 and for electrical conductivity (EC of soil it occurred at 6Mg S ha-1. Application of S had no effect on DTPA extractable Cd in soils whereas; its concentration increased 73.55% in average in plant tissue. Plant dry matter decreased significantly (about 63 percent following Cd application. Although the highest rate of S oxidation was observed at 4 and 6 Mg S ha-1 tٰٰٰhe maximum Cd extraction (2.5µg Cd pot-1 was observed at 2 Mg S ha-1 . This may be due to adverse effect of Cd toxicity and increase of soluble salt resulted by S oxidation in higher level of S application.

Uranium geochemistry in a calcareous peat: mineral-organic-microorganisms interactions and implications on uranium mobility in a contaminated soil

International Nuclear Information System (INIS)

Phrommavanh, V.; Descostes, M.; L'Orphelin, J.M.; Beaucaire, C.; Gaudet, J.P.

2009-01-01

The authors discuss the different approaches and techniques which have been implemented to study the behaviour of uranium in an as complex medium as a natural peat, in this case, a calcareous peat located on an old industrial site which was dedicated to uranium processing and which is now being decontaminated. They report and comment a chemical and mineralogical characterization of this peat, its hydrochemical characterization, and a microbial flora characterization

Acetylcholinesterase and Nissl staining in the same histological section.

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Shipley, M T; Ennis, M; Behbehani, M M

1989-12-18

Acetylcholinesterase (AChE) enzyme histochemistry and Nissl staining are commonly utilized in neural architectonic studies. However, the opaque reaction deposit produced by the most commonly used AChE histochemical methods is not compatible with satisfactory Nissl staining. As a result, precise correlation of AChE and Nissl staining necessitates time-consuming comparisons of adjacent sections which may have differential shrinkage. Here, we have modified the Koelle-Friedenwald histochemical reaction for AChE by omitting the final intensification steps. The modified reaction yields a non-opaque reaction product that is selectively visualized by darkfield illumination. This non-intensified darkfield AChE (NIDA) reaction allows clear visualization of Nissl staining in the same histological section. This combined AChE-Nissl method greatly facilitates detailed correlation of enzyme and cytoarchitectonic organization.

Transformation of nitrogenous fertilizers of surface and deep application in calcareous soil

International Nuclear Information System (INIS)

Zuo Dongfeng

1990-01-01

The transformations of 15 N labelled fertilizer N in calcareous soil were studied under greennhouse conditions. The experimental results indicate that the ratio of fixed ammonium is closely related to the methods of fertilizer application to the soil. When fertilizer N applied as deep dressing the fixation of nitrogen by clay minerals and microorganisms may markedly reduce the losses of nitrogen, but the amount of nitrogen fixed by the clay minerals and that by microorganisms showed negative correlation (r = -0.9185 ** ). The more the amount of fixed nitrogen by clay minerals, the less by microorganisms. No obvious interrelation between the residual utilization of urea, ammonium bicarbonate, ammonium sulfate and the ammount of nitrogen fixed by organisms can be observed, but the residual utilization of these fertilizers by the succeeding crop has been related to the total amount of mineral nitrogen

Should gram stains have a role in diagnosing hip arthroplasty infections?

Science.gov (United States)

Johnson, Aaron J; Zywiel, Michael G; Stroh, D Alex; Marker, David R; Mont, Michael A

2010-09-01

The utility of Gram stains in diagnosing periprosthetic infections following total hip arthroplasty has recently been questioned. Several studies report low sensitivity of the test, and its poor ability to either confirm or rule out infection in patients undergoing revision total hip arthroplasty. Despite this, many institutions including that of the senior author continue to perform Gram stains during revision total hip arthroplasty. We assessed the sensitivity, specificity, accuracy, and positive and negative predictive values of Gram stains from surgical-site samplings taken from procedures on patients with both infected and aseptic revision total hip arthroplasties. A review was performed on patients who underwent revision total hip arthroplasty between 2000 and 2007. Eighty-two Gram stains were performed on patients who had infected total hip arthroplasties and underwent revision procedures. Additionally, of the 410 revision total hip arthroplasties performed on patients who were confirmed infection-free, 120 Gram stains were performed. Patients were diagnosed as infected using multiple criteria at the time of surgery. Sensitivity, specificity, positive and negative predictive values, and accuracy were calculated from these Gram stain results. The Gram stain demonstrated a sensitivity and specificity of 9.8% and 100%, respectively. In this series, the Gram stain had a negative predictive value of 62%, a positive predictive value of 100%, and an accuracy of 63%. Gram stains obtained from surgical-site samples had poor sensitivity and poor negative predictive value. Based on these findings, as well as those of other authors, we believe that Gram stains should no longer be considered for diagnosing infections in revision total hip arthroplasty. Level III, diagnostic study. See Guidelines for Authors for a complete description of levels of evidence.

Standardization in biological staining. The influence of dye manufacturing

DEFF Research Database (Denmark)

Lyon, H

2000-01-01

not have been subjected to quality assessment either internally by the producer or vendor or externally by independent investigators or organizations such as the Biological Stain Commission. Concerted attempts at standardization in Europe are discussed. The latest results of this work, the European...... standard EN 12376, is presented. This standard is concerned with information supplied by the manufacturer with in vitro diagnostic reagents for biological staining. The standard has been prepared by a Working Group on Staining in Biology under Technical Committee 140, In Vitro Medical Devices...

Helicobacter pylori detection in chronic gastritis: a comparison of staining methods

International Nuclear Information System (INIS)

Ahmad, F.; Khan, I.

2011-01-01

Background: Helicobacter pylori is an important cause of chronic gastritis, gastric ulceration and gastric malignancies as gastric carcinoma and MALT lymphoma. Its definitive diagnosis is based on histopathology. Routine H and E stain is not very effective in its detection, immune-stains and fluorescent stains are costly. Need for simple cheap and sensitive stain has always been a topic of hot debate and extensive research. Method: paraffin embedded blocks of all adult patients diagnosed as chronic gastritis/gastric ulceration with no accompanying gastric pathology as hypertrophic gastropathys, and neoplasias were taken into study. Three sections of 4 micron were cut and stained with routine H and E, Giemsa, and Cresyl fast violet. Results: Total number of patients was 50. Out of these 37 (74%) were males and 13 (26%) were females. Mean age of the patients was 50.4 years. Thirty-four percent (34%) were positive in normal H and E stain, 68% were positive in Giemsa and 76% were positive in Cresyl fast violet. Conclusion: Cresyl fast violet is a good stain for diagnosis of H. pylori gastritis. (author)

Improving the relationship between soil characteristics and metal bioavailability by using reactive fractions of soil parameters in calcareous soils.

Science.gov (United States)

de Santiago-Martín, Ana; van Oort, Folkert; González, Concepción; Quintana, José R; Lafuente, Antonio L; Lamy, Isabelle

2015-01-01

The contribution of the nature instead of the total content of soil parameters relevant to metal bioavailability in lettuce was tested using a series of low-polluted Mediterranean agricultural calcareous soils offering natural gradients in the content and composition of carbonate, organic, and oxide fractions. Two datasets were compared by canonical ordination based on redundancy analysis: total concentrations (TC dataset) of main soil parameters (constituents, phases, or elements) involved in metal retention and bioavailability; and chemically defined reactive fractions of these parameters (RF dataset). The metal bioavailability patterns were satisfactorily explained only when the RF dataset was used, and the results showed that the proportion of crystalline Fe oxides, dissolved organic C, diethylene-triamine-pentaacetic acid (DTPA)-extractable Cu and Zn, and a labile organic pool accounted for 76% of the variance. In addition, 2 multipollution scenarios by metal spiking were tested that showed better relationships with the RF dataset than with the TC dataset (up to 17% more) and new reactive fractions involved. For Mediterranean calcareous soils, the use of reactive pools of soil parameters rather than their total contents improved the relationships between soil constituents and metal bioavailability. Such pool determinations should be systematically included in studies dealing with bioavailability or risk assessment. © 2014 SETAC.

Fast automatic quantitative cell replication with fluorescent live cell imaging

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Wang Ching-Wei

2012-01-01

Full Text Available Abstract Background live cell imaging is a useful tool to monitor cellular activities in living systems. It is often necessary in cancer research or experimental research to quantify the dividing capabilities of cells or the cell proliferation level when investigating manipulations of the cells or their environment. Manual quantification of fluorescence microscopic image is difficult because human is neither sensitive to fine differences in color intensity nor effective to count and average fluorescence level among cells. However, auto-quantification is not a straightforward problem to solve. As the sampling location of the microscopy changes, the amount of cells in individual microscopic images varies, which makes simple measurement methods such as the sum of stain intensity values or the total number of positive stain within each image inapplicable. Thus, automated quantification with robust cell segmentation techniques is required. Results An automated quantification system with robust cell segmentation technique are presented. The experimental results in application to monitor cellular replication activities show that the quantitative score is promising to represent the cell replication level, and scores for images from different cell replication groups are demonstrated to be statistically significantly different using ANOVA, LSD and Tukey HSD tests (p-value Conclusion A robust automated quantification method of live cell imaging is built to measure the cell replication level, providing a robust quantitative analysis system in fluorescent live cell imaging. In addition, the presented unsupervised entropy based cell segmentation for live cell images is demonstrated to be also applicable for nuclear segmentation of IHC tissue images.

Decreased mortality associated with prompt Gram staining of blood cultures.

Science.gov (United States)

Barenfanger, Joan; Graham, Donald R; Kolluri, Lavanya; Sangwan, Gaurav; Lawhorn, Jerry; Drake, Cheryl A; Verhulst, Steven J; Peterson, Ryan; Moja, Lauren B; Ertmoed, Matthew M; Moja, Ashley B; Shevlin, Douglas W; Vautrain, Robert; Callahan, Charles D

2008-12-01

Gram stains of positive blood cultures are the most important factor influencing appropriate therapy. The sooner appropriate therapy is initiated, the better. Therefore, it is reasonable to expect that the sooner Gram stains are performed, the better. To determine the value of timely Gram stains and whether improvement in Gram stain turnaround time (TAT) is feasible, we compared data for matched pairs of patients with cultures processed promptly ( or =1 hour TAT) and then monitored TAT by control charting.In 99 matched pairs, average difference in time to detection of positive blood cultures within a pair of patients was less than 0.1 hour. For the less than 1 hour TAT group, the average TAT and crude mortality were 0.1 hour and 10.1%, respectively; for the 1 hour or longer TAT group, they were 3.3 hours and 19.2%, respectively (P Gram stains.

A new technique for Gram staining paraffin-embedded tissue.

Science.gov (United States)

Engbaek, K; Johansen, K S; Jensen, M E

1979-01-01

Five techniques for Gram staining bacteria in paraffin sections were compared on serial sections of pulmonary tissues from eight bacteriological necropsies. Brown and Hopp's method was the most satisfactory for distinguishing Gram-positive and Gram-negative bacteria. However, this method cannot be recommended as the preparations were frequently overstained, and the Gram-negative bacteria were stained indistinctly. A modification of Brown and Hopps' method was developed which stains larger numbers of Gram-negative bacteria and differentiates well between different cell types and connective tissue, and there is no risk of overstaining. PMID:86548

Evaluation of a fluorescent lectin-based staining technique for some acidophilic mining bacteria

International Nuclear Information System (INIS)

Fife, D.J.; Bruhn, D.F.; Miller, K.S.; Stoner, D.L.

2000-01-01

A fluorescence-labeled wheat germ agglutinin staining technique was modified and found to be effective for staining gram-positive, acidophilic mining bacteria. Bacteria identified by others as being gram positive through 16S rRNA sequence analyses, yet clustering near the divergence of that group, stained weakly. Gram-negative bacteria did not stain. Background staining of environmental samples was negligible, and pyrite and soil particles in the samples did not interfere with the staining procedure

A flow-cytometric gram-staining technique for milk-associated bacteria.

Science.gov (United States)

Holm, Claus; Jespersen, Lene

2003-05-01

A Gram-staining technique combining staining with two fluorescent stains, Oregon Green-conjugated wheat germ agglutinin (WGA) and hexidium iodide (HI) followed by flow-cytometric detection is described. WGA stains gram-positive bacteria while HI binds to the DNA of all bacteria after permeabilization by EDTA and incubation at 50 degrees C for 15 min. For WGA to bind to gram-positive bacteria, a 3 M potassium chloride solution was found to give the highest fluorescence intensity. A total of 12 strains representing some of the predominant bacterial species in bulk tank milk and mixtures of these were stained and analyzed by flow cytometry. Overall, the staining method showed a clear differentiation between gram-positive and gram-negative bacterial populations. For stationary-stage cultures of seven gram-positive bacteria and five gram-negative bacteria, an average of 99% of the cells were correctly interpreted. The method was only slightly influenced by the growth phase of the bacteria or conditions such as freezing at -18 degrees C for 24 h. For any of these conditions, an average of at least 95% of the cells were correctly interpreted. When stationary-stage cultures were stored at 5 degrees C for 14 days, an average of 86% of the cells were correctly interpreted. The Gram-staining technique was applied to the flow cytometry analysis of bulk tank milk inoculated with Staphylococcus aureus and Escherichia coli. These results demonstrate that the technique is suitable for analyzing milk samples without precultivation.

SPRINGS WITH CALCAREOUS TUFA IN THE VALLEY OF THE JAMNE CREEK IN GORCE

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Roksana Krause

2015-01-01

Full Text Available The study gives a detail characteristic of a hard water springs habitat with the communities of Cratoneurion commutati (habitat code of Nature 2000: 7220, localized within Nature 2000 protected area Ostoja Gorczańska PLH120018, in an upper part of the valley of Jamne creek. The plants are described along with the main habitat parameters, namely: altitude, exposition, slope gradient, insolation, type of bedrock, water flow regime and the spring outflow efficiency. The temperature, pH, electrical conductivity were measured in the field, the concentrations of Ca and Mg in spring water were measured by Atomic Absorption Spectroscopy (AAS. The investigated headwater areas are small (0.7–80 m2 and highly differentiated by the intensity of calcareous tufa precipitation and the degree of plant cover development.

Evaluation of Papanicolaou stain for studying micronuclei in buccal cells under field conditions.

Science.gov (United States)

Ayyad, Sohair B A; Israel, Ebenezer; El-Setouhy, Maged; Nasr, Ghada Radwan; Mohamed, Mostafa K; Loffredo, Christopher A

2006-01-01

To compare Papanicolaou (Pap) and May-Grünwald Giemsa (MGG) stain as 2 techniques for staining for buccal mucosal cells to detect micronuclei (MN) infield studies. Eighty cytologic smears (2 per individual) were taken from the buccal mucosa of 40 cigarette smokers recruited at a rural village in Egypt. Forty smears were stained with Pap stain and 40 with MGG stain. All were assessed for cellularity and scored for MN. Pap stain was faster and easier to process and transport in the field study than was MGG stain. Regarding MGG smears, bacteria and cell debris masked the MN as compared to Pap smears, in which the fixative destroyed the bacteria and made the cell boundaries clearly demarcated. Using Pap stain, MN were seen easily in transparent cytoplasm. Pap stain is the preferred method infield studies for scoring and detecting MN in cells of buccal mucosa.

Aspects of land application of sewage solids and gamma-irradiated dried sewage solids on calcareous soils

International Nuclear Information System (INIS)

McCaslin, B.D.; O'Connor, G.A.; Sivinski, J.S.

1980-01-01

One of the cheapest and generally most convenient methods of disposing of sewage sludge is by land application. The greatest risks of land application are potential contamination of the environment by heavy metals, other toxicants, and pathogens. Irradiation of sewage sludge has been shown to have little or no effect on sludge elements available to plants, and can remove the potential pathogen problem. Work at New Mexico State University has shown that, with little risk, gamma-irradiated sewage sludge can be used to great advantage for crop production, especially on highly calcareous soils low in heavy metals essential for plant growth

Kinetics of bacterial fluorescence staining with 3,3'-diethylthiacyanine.

Science.gov (United States)

Thomas, Marlon S; Nuñez, Vicente; Upadhyayula, Srigokul; Zielins, Elizabeth R; Bao, Duoduo; Vasquez, Jacob M; Bahmani, Baharak; Vullev, Valentine I

2010-06-15

For more than a century, colorimetric and fluorescence staining have been the foundation of a broad range of key bioanalytical techniques. The dynamics of such staining processes, however, still remains largely unexplored. We investigated the kinetics of fluorescence staining of two gram-negative and two gram-positive species with 3,3'-diethylthiacyanine (THIA) iodide. An increase in the THIA fluorescence quantum yield, induced by the bacterial dye uptake, was the principal reason for the observed emission enhancement. The fluorescence quantum yield of THIA depended on the media viscosity and not on the media polarity, which suggested that the microenvironment of the dye molecules taken up by the cells was restrictive. The kinetics of fluorescence staining did not manifest a statistically significant dependence neither on the dye concentration, nor on the cell count. In the presence of surfactant additives, however, the fluorescence-enhancement kinetic patterns manifested species specificity with statistically significant discernibility.

Zinc solubility and fractionation in cultivated calcareous soils irrigated with wastewater

Energy Technology Data Exchange (ETDEWEB)

Nazif, W. [Division of Agricultural and Environmental Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire LE12 5RD (United Kingdom); Marzouk, E.R. [Division of Soil and Water Sciences, Faculty of Environmental Agricultural Sciences, Suez Canal University, North Sinai 45516 (Egypt); Perveen, S. [Department of Soil and Environmental Sciences, Khyber Pakhtunkhwa Agricultural University, Peshawar (Pakistan); Crout, N.M.J. [Division of Agricultural and Environmental Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire LE12 5RD (United Kingdom); Young, S.D., E-mail: scott.young@nottingham.ac.uk [Division of Agricultural and Environmental Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire LE12 5RD (United Kingdom)

2015-06-15

The solubility, lability and fractionation of zinc in a range of calcareous soils from Peshawar, Pakistan were studied (18 topsoils and 18 subsoils). The lability (E-value) of Zn was assessed as the fraction isotopically exchangeable with {sup 70}Zn{sup 2+}; comparative extractions included 0.005 M DTPA, 0.43 M HNO{sub 3} and a Tessier-style sequential extraction procedure (SEP). Because of the extremely low concentration of labile Zn the E-value was determined in soils suspended in 0.0001 M Na{sub 2}-EDTA which provided reliable analytical conditions in which approximately 20% of the labile Zn was dissolved. On average, only 2.4% of soil Zn was isotopically exchangeable. This corresponded closely to Zn solubilised by extraction with 0.005 DTPA and by the carbonate extraction step (F1 + F2) of the Tessier-style SEP. Crucially, although the majority of the soil CaCO{sub 3} was dissolved in F2 of the SEP, the DTPA dissolved only a very small proportion of the soil CaCO{sub 3}. This suggests a superficial carbonate-bound form of labile Zn, accessible to extraction with DTPA and to isotopic exchange. Zinc solubility from soil suspended in 0.01 M Ca(NO{sub 3}){sub 2} (PCO{sub 2} controlled at 0.03) was measured over three days. Following solution speciation using WHAM(VII) two simple solubility models were parameterised: a pH dependent ‘adsorption’ model based on the labile (isotopically exchangeable) Zn distribution coefficient (Kd) and an apparent solubility product (Ks) for ZnCO{sub 3}. The distribution coefficient showed no pH-dependence and the solubility model provided the best fit to the free ion activity (Zn{sup 2+}) data, although the apparent value of log{sub 10} Ks (5.1) was 2.8 log units lower than that of the mineral smithsonite (ZnCO{sub 3}). - Highlights: • Isotopically exchangeable Zn in the calcareous soils of Peshawar is extremely low. • There is no evidence of topsoil enrichment from the use of wastewater for irrigation. • Solubility

Zinc solubility and fractionation in cultivated calcareous soils irrigated with wastewater

International Nuclear Information System (INIS)

Nazif, W.; Marzouk, E.R.; Perveen, S.; Crout, N.M.J.; Young, S.D.

2015-01-01

The solubility, lability and fractionation of zinc in a range of calcareous soils from Peshawar, Pakistan were studied (18 topsoils and 18 subsoils). The lability (E-value) of Zn was assessed as the fraction isotopically exchangeable with 70 Zn 2+ ; comparative extractions included 0.005 M DTPA, 0.43 M HNO 3 and a Tessier-style sequential extraction procedure (SEP). Because of the extremely low concentration of labile Zn the E-value was determined in soils suspended in 0.0001 M Na 2 -EDTA which provided reliable analytical conditions in which approximately 20% of the labile Zn was dissolved. On average, only 2.4% of soil Zn was isotopically exchangeable. This corresponded closely to Zn solubilised by extraction with 0.005 DTPA and by the carbonate extraction step (F1 + F2) of the Tessier-style SEP. Crucially, although the majority of the soil CaCO 3 was dissolved in F2 of the SEP, the DTPA dissolved only a very small proportion of the soil CaCO 3 . This suggests a superficial carbonate-bound form of labile Zn, accessible to extraction with DTPA and to isotopic exchange. Zinc solubility from soil suspended in 0.01 M Ca(NO 3 ) 2 (PCO 2 controlled at 0.03) was measured over three days. Following solution speciation using WHAM(VII) two simple solubility models were parameterised: a pH dependent ‘adsorption’ model based on the labile (isotopically exchangeable) Zn distribution coefficient (Kd) and an apparent solubility product (Ks) for ZnCO 3 . The distribution coefficient showed no pH-dependence and the solubility model provided the best fit to the free ion activity (Zn 2+ ) data, although the apparent value of log 10 Ks (5.1) was 2.8 log units lower than that of the mineral smithsonite (ZnCO 3 ). - Highlights: • Isotopically exchangeable Zn in the calcareous soils of Peshawar is extremely low. • There is no evidence of topsoil enrichment from the use of wastewater for irrigation. • Solubility products for smithsonite and hydrozincite fail to describe Zn 2

Detection of radioactively labeled proteins is quenched by silver staining methods: quenching is minimal for 14C and partially reversible for 3H with a photochemical stain

International Nuclear Information System (INIS)

Van Keuren, M.L.; Goldman, D.; Merril, C.R.

1981-01-01

Silver staining methods for protein detection in polyacrylamide gels have a quenching effect on autoradiography and fluorography. This effect was quantitated for proteins in two-dimensional gels by microdensitometry using a computer equipped with an image processor and by scintillation counting of proteins solubilized from the gels. The original histologically derived silver stain had a quenching effect that was severe and irreversible for 3 H detection and moderate for 14 C detection. A silver stain based on photochemical methods had minimal quenching of 14 C detection and less of a quenching effect than the histological stain for 3 H detection. The 3 H quenching effect was partially reversible for the photochemical stain

Effect of four acidifying materials added to a calcareous soil on the availability of phosphorus to ryegrass

Energy Technology Data Exchange (ETDEWEB)

Sen Gupta, M B; Cornfield, A H

1964-12-01

Ryegrass was grown in a pot test using a calcareous soil (0.36% calcium carbonate) treated with sulfur, ammonium sulfate, ferrous sulfate, and aluminium sulfate at 0.1% sulfur-equivalent, with potassium nitrate added where necessary, including the control, to equalize nitrogen supply. The sulfur treatment was the only one which significantly increased dry matter yields, total phosphorus uptake and top/root ratios in dry matter yields and total phosphorus. The ammonium sulfate, ferrous sulfate, and aluminium sulfate treatments significantly reduced top/root ratios in dry-matter yields and total phosphorus. 6 references, 1 table.

Live-cell imaging of conidial anastomosis tube fusion during colony initiation in Fusarium oxysporum.

Directory of Open Access Journals (Sweden)

Smija M Kurian

Full Text Available Fusarium oxysporum exhibits conidial anastomosis tube (CAT fusion during colony initiation to form networks of conidial germlings. Here we determined the optimal culture conditions for this fungus to undergo CAT fusion between microconidia in liquid medium. Extensive high resolution, confocal live-cell imaging was performed to characterise the different stages of CAT fusion, using genetically encoded fluorescent labelling and vital fluorescent organelle stains. CAT homing and fusion were found to be dependent on adhesion to the surface, in contrast to germ tube development which occurs in the absence of adhesion. Staining with fluorescently labelled concanavalin A indicated that the cell wall composition of CATs differs from that of microconidia and germ tubes. The movement of nuclei, mitochondria, vacuoles and lipid droplets through fused germlings was observed by live-cell imaging.

Etika Berbusana Mahasiswa Stain Samarinda

Directory of Open Access Journals (Sweden)

Ida Suryani Wijaya

2012-06-01

Full Text Available Ethics is about behavior of human being, such as which one is right or wrong. The ethics is always affecting the human life. The ethics gives people orientation how he/she do manything every time every day. Islamic ethics consists of the way how someone interact each other; how someone should do or not to do, how to sit, how to walk, how to eat or drink, how to sleep, or how to get dressed. Al-Qur’an uses three terms to define about dressing, they are: libas, tsiyah, and sarahi. Dressing has a function as covering the body, as assessoris, as the way to do Islamic taqwa, and as an identiy. Dressing ethics of the female students of STAIN Samarinda has been regulated by the rector regulation No 19 of the year 2002 about relation and dressing ethics for the students of STAIN Samarinda.

A Comparison of Heat versus Methanol Fixation for Gram Staining Bacteria

Science.gov (United States)

Minnerath, Jeanne M.; Roland, Jenna M.; Rossi, Lucas C.; Weishalla, Steven R.; Wolf, Melissa M.

2009-01-01

Gram staining bacteria is a fundamental technique introduced in general biology and microbiology laboratory courses. Two common problems students encounter when Gram staining bacteria are (1) having a difficult time locating bacterial cells on the microscope slide and (2) over-decolorizing bacterial cells during the staining procedure such that…

Sperm viability staining in ecology and evolution: potential pitfalls

DEFF Research Database (Denmark)

Holman, Luke

2009-01-01

The causes and consequences of variation in sperm quality, survival and ageing are active areas of research in ecology and evolution. In order to address these topics, many recent studies have measured sperm viability using fluorescent staining. Although sperm viability staining has produced a nu...

Preparation of colloidal gold for staining proteins electrotransferred onto nitrocellulose membranes.

Science.gov (United States)

Yamaguchi, K; Asakawa, H

1988-07-01

This paper describes a simple method of preparing colloidal gold for staining protein blots. Colloidal gold was prepared from 0.005 or 0.01% HAuCl4 by the addition of formalin as a reductant and potassium hydroxide. Staining of small cell carcinoma tissue extract blotted onto nitrocellulose membranes with this colloidal gold solution resulted in the appearance of a large number of clear wine-red bands. The sensitivity of gold staining was 60 times higher than that of Coomassie brilliant blue staining and almost comparable to that of silver staining of proteins in polyacrylamide gel. The sensitivity of this method was also satisfactory in comparison with that of enzyme immunoblotting. The colloidal gold prepared by this method is usable for routine work.

Color and dichroism of silver-stained glasses

International Nuclear Information System (INIS)

Molina, Gloria; Murcia, Sonia; Molera, Judit; Roldan, Clodoaldo; Crespo, Daniel; Pradell, Trinitat

2013-01-01

Yellow decorations in glasses have been produced since the beginning of the fourteenth century by incorporating metallic silver nanoparticles into the glass (from a few to some tens of nanometers). The optical response of the glass-particles composite is determined by the surface plasmon resonance absorption and scattering of the nanometric metallic particles. Generally, the same color is perceived in reflection and in transmission although dichroic effects are occasionally observed. As silver-stained glasses were designed to be observed in transmission, tuning the transmission color from yellow to red was of technological interest. The relationship between the color observed both in transmission and reflection and the composition and nanostructure of regular (yellow) and dichroic (yellow and red) silver stains from the Renaissance (late fifteenth and sixteenth century, respectively) is related to the presence of a layer (of about 10–20 μm thick) of metallic silver nanoparticles (from few to 100 nm in size). The correlation between the colors observed and the silver stain nanostructure is studied with particular emphasis on the origin of the dichroic behavior. The optical response is computed and compared to the experimental data. Differences in the synthesis parameters responsible for the colors and for the dichroic behavior of the silver stain glasses are proposed. This is essential for the replication of the glass pieces which are required as replacements in the restoration/conservation of the windows but is also of broader interest

Color and dichroism of silver-stained glasses

Energy Technology Data Exchange (ETDEWEB)

Molina, Gloria [Universitat Politecnica de Catalunya, Center for Research in NanoEngineering (Spain); Murcia, Sonia [Universidad de Valencia, Instituto de Ciencia de los Materiales (Spain); Molera, Judit [Universitat de Vic, GRTD, Escola Politecnica Superior (Spain); Roldan, Clodoaldo [Universidad de Valencia, Instituto de Ciencia de los Materiales (Spain); Crespo, Daniel; Pradell, Trinitat, E-mail: Trinitat.Pradell@upc.edu [Universitat Politecnica de Catalunya, Center for Research in NanoEngineering (Spain)

2013-09-15

Yellow decorations in glasses have been produced since the beginning of the fourteenth century by incorporating metallic silver nanoparticles into the glass (from a few to some tens of nanometers). The optical response of the glass-particles composite is determined by the surface plasmon resonance absorption and scattering of the nanometric metallic particles. Generally, the same color is perceived in reflection and in transmission although dichroic effects are occasionally observed. As silver-stained glasses were designed to be observed in transmission, tuning the transmission color from yellow to red was of technological interest. The relationship between the color observed both in transmission and reflection and the composition and nanostructure of regular (yellow) and dichroic (yellow and red) silver stains from the Renaissance (late fifteenth and sixteenth century, respectively) is related to the presence of a layer (of about 10-20 {mu}m thick) of metallic silver nanoparticles (from few to 100 nm in size). The correlation between the colors observed and the silver stain nanostructure is studied with particular emphasis on the origin of the dichroic behavior. The optical response is computed and compared to the experimental data. Differences in the synthesis parameters responsible for the colors and for the dichroic behavior of the silver stain glasses are proposed. This is essential for the replication of the glass pieces which are required as replacements in the restoration/conservation of the windows but is also of broader interest.

Clinical Utility of an Automated Instrument for Gram Staining Single Slides ▿

Science.gov (United States)

Baron, Ellen Jo; Mix, Samantha; Moradi, Wais

2010-01-01

Gram stains of 87 different clinical samples were prepared by the laboratory's conventional methods (automated or manual) and by a new single-slide-type automated staining instrument, GG&B AGS-1000. Gram stains from either heat- or methanol-fixed slides stained with the new instrument were easy to interpret, and results were essentially the same as those from the methanol-fixed slides prepared as a part of the routine workflow. This instrument is well suited to a rapid-response laboratory where Gram stain requests are commonly received on a stat basis. PMID:20410348

Touch cytology in diagnosing Helicobacter pylori: comparison of four staining methods.

Science.gov (United States)

Hashemi, M R; Rahnavardi, M; Bikdeli, B; Dehghani Zahedani, M; Iranmanesh, F

2008-06-01

Helicobacter pylori (Hp), a major cause of peptic ulcer disease and an important risk factor for gastric malignancy, can be diagnosed by several methods. Touch cytology (TC) of the gastric mucosa has been noted to give good results and has been found to be very simple, inexpensive and rapid. However, evidence regarding the accuracy of different staining methods of TC is lacking. The present study aims at defining the diagnostic accuracy of four different staining methods of TC. Biopsy specimens were taken from the antral mucosa of one hundred consecutive patients referred for upper gastrointestinal endoscopy (UGIE) for various indications. TC slides were processed by four staining methods: Wright, Giemsa, Papanicolaou and Gram. Rapid urease test (RUT) and histological examination of specimens were also performed. The same experienced pathologist evaluated the coded samples. A patient's Hp status was established by minimum concordance of the three tests, including histology, RUT, and 'Touch mean'. The latter was defined positive when at least three of the four TC staining methods were positive. Forty-six patients (46%) were positive for Hp according to Hp status. TC stained by Wright had excellent agreement with both histology (kappa = 0.80, P stained TC (88.89%) was significantly more specific than both Giemsa- (74.07%; P stained (70.37%; P stained TC can safely substitute for histology. However, when assessment for severity of mucosal damage or cell atypias is meant, histology cannot be neglected.

Dynamics of phosphorus fractions in the rhizosphere of fababean (Phaseolus vulgaris L.) and maize (Zea mays L.) grown in calcareous and acid soils

NARCIS (Netherlands)

Li, G.; Li, Haigang; Leffelaar, P.A.; Shen, J.; Zhang, F.

2015-01-01

The dynamics of soil phosphorus (P) fractions were investigated, in the rhizosphere of fababean (Vicia faba L.) and maize (Zea mays L.) grown in calcareous and acid soils. Plants were grown in a mini-rhizotron with a thin (3 mm) soil layer, which was in contact with the root-mat, and considered as

Intrapartum transcervical amnioinfusion for meconium-stained amniotic fluid.

Science.gov (United States)

Das, A K; Jana, N; Dasgupta, S; Samanta, B

2007-06-01

To assess the rates of cesarean deliveries and perinatal outcome following intrapartum transcervical amnioinfusion in women with meconium-stained amniotic fluid (MSAF) in a setting with no electronic fetal monitoring or specialized neonatal care. In this prospective comparative study with 150 women who were in labor and had MSAF, 50 of the women received a transcervical amnioinfusion and the remaining 100 women received standard care. The inclusion criteria were a pregnancy of at least 37 weeks' duration, a single live fetus in cephalic presentation, no major medical or obstetric complications, and no known fetal malformation. The amnioinfusion was performed with 1000 mL of normal saline solution through a red rubber catheter. Amnioinfusion was associated with a significant decrease in the incidence of low Apgar score (amnioinfusion than in the control group (24% vs. 48%; RR, 0.5; 95% CI, 0.29-0.85). There were no major complications related to amnioinfusion. Intrapartum amnioinfusion for MSAF is a simple, safe, effective, and inexpensive procedure feasible in settings where intrapartum monitoring is limited. It is associated with improved perinatal outcome and could lower cesarean delivery rates in low-resource countries.

Comparison of algorithms for blood stain detection applied to forensic hyperspectral imagery

Science.gov (United States)

Yang, Jie; Messinger, David W.; Mathew, Jobin J.; Dube, Roger R.

2016-05-01

Blood stains are among the most important types of evidence for forensic investigation. They contain valuable DNA information, and the pattern of the stains can suggest specifics about the nature of the violence that transpired at the scene. Early detection of blood stains is particularly important since the blood reacts physically and chemically with air and materials over time. Accurate identification of blood remnants, including regions that might have been intentionally cleaned, is an important aspect of forensic investigation. Hyperspectral imaging might be a potential method to detect blood stains because it is non-contact and provides substantial spectral information that can be used to identify regions in a scene with trace amounts of blood. The potential complexity of scenes in which such vast violence occurs can be high when the range of scene material types and conditions containing blood stains at a crime scene are considered. Some stains are hard to detect by the unaided eye, especially if a conscious effort to clean the scene has occurred (we refer to these as "latent" blood stains). In this paper we present the initial results of a study of the use of hyperspectral imaging algorithms for blood detection in complex scenes. We describe a hyperspectral imaging system which generates images covering 400 nm - 700 nm visible range with a spectral resolution of 10 nm. Three image sets of 31 wavelength bands were generated using this camera for a simulated indoor crime scene in which blood stains were placed on a T-shirt and walls. To detect blood stains in the scene, Principal Component Analysis (PCA), Subspace Reed Xiaoli Detection (SRXD), and Topological Anomaly Detection (TAD) algorithms were used. Comparison of the three hyperspectral image analysis techniques shows that TAD is most suitable for detecting blood stains and discovering latent blood stains.

Lasers or light sources for treating port-wine stains

DEFF Research Database (Denmark)

Faurschou, Annesofie; Olesen, Anne Braae; Leonardi-Bee, Jo

2011-01-01

Port-wine stains are birthmarks caused by malformations of blood vessels in the skin. Port-wine stains manifest themselves in infancy as a flat, red mark and do not regress spontaneously but may, if untreated, become darker and thicker in adult life. The profusion of various lasers and light...

Calcareous nannofossil assemblages across the Pliensbachian/Toarcian boundary at the Peniche section (Ponta do Trovão, Lusitanian Basin)

OpenAIRE

Mailliot, S.; Elmi, S.; Mattioli, E.; Pittet, B.

2007-01-01

The Peniche section has revealed moderately-to-well preserved calcareous nannofossil assemblages across the Pliensbachian/Toarcian boundary. This good record has allowed the proposition of a refined biostratigraphic scheme. The stage boundary, as defined by ammonites, is comprised within the NJ5b C. impontus (NW Europe; BOWN & COOPER, 1998) or the NJT5b L. sigillatus (Mediterranean Tethys; MATTIOLI & ERBA, 1999) nannofossil subzones. Since in the Lusitanian Basin a mixing of N- and S-Te...

Enhancing the Durability of Calcareous Stone Monuments of Ancient Egypt Using CaCO3 Nanoparticles

Directory of Open Access Journals (Sweden)

Mohammad A. Aldoasri

2017-08-01

Full Text Available The unwanted changes in valuable historic calcareous stone monuments due to exposure to many physical and chemical effects may lead to its deterioration. The growing interest in the field of conservation of stone monuments encourages the development of consolidation and water-repellent materials. The aim of this study is to evaluate the effectiveness of CaCO3 nanoparticles as a consolidation and protection material for calcareous stone monuments, when those nanoparticles used are dispersed in acrylic copolymer; polyethylmethacrylate (EMA/methylacrylate (MA (70/30, respectively. Samples were subjected to artificial aging by relative humidity/temperature to show the optimum conditions of durability and the effectiveness of the nano-mixture in improving the physical and mechanical properties of the stone material. The synthesis process of CaCO3 nanoparticles/polymer nanocomposite has been prepared by in situ emulsion polymerization system. The prepared nanocomposites with 0.15 g CaCO3 nanoparticles showed obvious transparency features and represent nanocomposites coating technology with hydrophobic, consolidating and good protection properties. Some tests were performed in order to estimate the superficial consolidating and protective effect of the treatment. The obtained nanocomposites have been characterized by TEM, while the surface morphology before and after treatment and homogeneous distribution of used consolidation materials on stone surface were examined by SEM. Improvement of stone mechanical properties was evaluated by compressive strength tests. Change in water-interaction properties was evaluated by water absorption capillarity measurements, and colorimetric measurements were used to evaluate the optical appearance. Taken together, the results indicate that CaCO3/polymer nanocomposite is a completely compatible, efficient material for the consolidation of artistic and architectural limestone monuments capable of enhancing the

Spatial and seasonal reef calcification in corals and calcareous crusts in the central Red Sea

KAUST Repository

Roik, Anna Krystyna; Roder, Cornelia; Rö thig, Till; Voolstra, Christian R.

2015-01-01

The existence of coral reef ecosystems critically relies on the reef carbonate framework produced by scleractinian corals and calcareous crusts (i.e., crustose coralline algae). While the Red Sea harbors one of the longest connected reef systems in the world, detailed calcification data are only available from the northernmost part. To fill this knowledge gap, we measured in situ calcification rates of primary and secondary reef builders in the central Red Sea. We collected data on the major habitat-forming coral genera Porites, Acropora, and Pocillopora and also on calcareous crusts (CC) in a spatio-seasonal framework. The scope of the study comprised sheltered and exposed sites of three reefs along a cross-shelf gradient and over four seasons of the year. Calcification of all coral genera was consistent across the shelf and highest in spring. In addition, Pocillopora showed increased calcification at exposed reef sites. In contrast, CC calcification increased from nearshore, sheltered to offshore, exposed reef sites, but also varied over seasons. Comparing our data to other reef locations, calcification in the Red Sea was in the range of data collected from reefs in the Caribbean and Indo-Pacific; however, Acropora calcification estimates were at the lower end of worldwide rates. Our study shows that the increasing coral cover from nearshore to offshore environments aligned with CC calcification but not coral calcification, highlighting the potentially important role of CC in structuring reef cover and habitats. While coral calcification maxima have been typically observed during summer in many reef locations worldwide, calcification maxima during spring in the central Red Sea indicate that summer temperatures exceed the optima of reef calcifiers in this region. This study provides a foundation for comparative efforts and sets a baseline to quantify impact of future environmental change in the central Red Sea.

Spatial and seasonal reef calcification in corals and calcareous crusts in the central Red Sea

KAUST Repository

Roik, Anna Krystyna

2015-12-14

The existence of coral reef ecosystems critically relies on the reef carbonate framework produced by scleractinian corals and calcareous crusts (i.e., crustose coralline algae). While the Red Sea harbors one of the longest connected reef systems in the world, detailed calcification data are only available from the northernmost part. To fill this knowledge gap, we measured in situ calcification rates of primary and secondary reef builders in the central Red Sea. We collected data on the major habitat-forming coral genera Porites, Acropora, and Pocillopora and also on calcareous crusts (CC) in a spatio-seasonal framework. The scope of the study comprised sheltered and exposed sites of three reefs along a cross-shelf gradient and over four seasons of the year. Calcification of all coral genera was consistent across the shelf and highest in spring. In addition, Pocillopora showed increased calcification at exposed reef sites. In contrast, CC calcification increased from nearshore, sheltered to offshore, exposed reef sites, but also varied over seasons. Comparing our data to other reef locations, calcification in the Red Sea was in the range of data collected from reefs in the Caribbean and Indo-Pacific; however, Acropora calcification estimates were at the lower end of worldwide rates. Our study shows that the increasing coral cover from nearshore to offshore environments aligned with CC calcification but not coral calcification, highlighting the potentially important role of CC in structuring reef cover and habitats. While coral calcification maxima have been typically observed during summer in many reef locations worldwide, calcification maxima during spring in the central Red Sea indicate that summer temperatures exceed the optima of reef calcifiers in this region. This study provides a foundation for comparative efforts and sets a baseline to quantify impact of future environmental change in the central Red Sea.

An improved method for staining cell colonies in clonogenic assays.

Science.gov (United States)

Guda, Kishore; Natale, Leanna; Markowitz, Sanford D

2007-06-01

Clonogenic assay is a widely used experimental approach to test for the effects of drugs/genes on the growth and proliferative characteristics of cells in vitro. Accurate quantitation of treatment effects in clonogeneic assays depends on the ability to visualize and count cell colonies precisely. We report a novel method (referred as ETeB) for staining cell colonies grown on plastic and specially coated substrates like collagen. Using colon cancer cell lines grown on plastic and collagen, we compared the colony staining efficiencies of the widely used methylene blue, and Ethidium bromide (ETeB) stains. Results show that the ETeB protocol works well on plastic and is extremely effective for staining colonies on collagen when compared to methylene blue. The key features and advantages of ETeB technique are; (a) reduction in background for colonies grown on collagen and possibly other substrates, (b) the whole procedure takes less than a minute, (c) no post-stain washing step is required which eliminates colony losses for cell lines that are loosely adherent, (d) colony visualization and counting can be done immediately following the staining procedure using a standard UV illuminator and software, and (e) the method works across a wide variety of cell lines. The simplicity and robustness of this procedure should warrant its usage in both small and large-scale clonogenic experiments.

21 CFR 864.1850 - Dye and chemical solution stains.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Dye and chemical solution stains. 864.1850 Section 864.1850 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES HEMATOLOGY AND PATHOLOGY DEVICES Biological Stains § 864.1850 Dye and chemical...

Borax methylene blue: a spectroscopic and staining study.

Science.gov (United States)

Donaldson, P T; Russo, A; Reynolds, C; Lillie, R D

1978-07-01

Borax methylene blue is quite stable at room temperatures of 22-25 C. At 30 C polychroming is slow; during 50 days in a water bath at this temperature the absorption peak moves from 665 to 656 nm. At 35 C, the absorption peak reaches 660 nm in 7 days, 654 nm in 14. At 60 C polychroming is rapid, the absorption peak reaching 640-620 nm in 3 days. When the pH of the borax methylene blue solutions, normally about 9.0, is adjusted to pH 6.5, the absorption peak remains at 665 nm even when incubated at 60 C for extended periods. When used as a blood stain 0.4 ml borax methylene blue (1% methylene blue in 1% borax), 4 ml acetone, 2 ml borax-acid phosphate buffer to bring the solution to pH 6.5, and distilled water to make 40 ml, with 0.2 ml 1% eosin added just before using, an excellent Nocht-Giemsa type stain is achieved after 30 minutes staining. The material plasmodia P. falciparum, P. vivax, and P. berghei stain moderate blue with dark red chromatin and green to black pigment granules. The study confirms Malachowski's 1891 results and explains Gautier's 1896-98 failure to duplicate it.

A procedure for Alcian blue staining of mucins on polyvinylidene difluoride membranes.

Science.gov (United States)

Dong, Weijie; Matsuno, Yu-ki; Kameyama, Akihiko

2012-10-16

The isolation and characterization of mucins are critically important for obtaining insight into the molecular pathology of various diseases, including cancers and cystic fibrosis. Recently, we developed a novel membrane electrophoretic method, supported molecular matrix electrophoresis (SMME), which separates mucins on a polyvinylidene difluoride (PVDF) membrane impregnated with a hydrophilic polymer. Alcian blue staining is widely used to visualize mucopolysaccharides and acidic mucins on both blotted membranes and SMME membranes; however, this method cannot be used to stain mucins with a low acidic glycan content. Meanwhile, periodic acid-Schiff staining can selectively visualize glycoproteins, including mucins, but is incompatible with glycan analysis, which is indispensable for mucin characterizations. Here we describe a novel staining method, designated succinylation-Alcian blue staining, for visualizing mucins on a PVDF membrane. This method can visualize mucins regardless of the acidic residue content and shows a sensitivity 2-fold higher than that of Pro-Q Emerald 488, a fluorescent periodate Schiff-base stain. Furthermore, we demonstrate the compatibility of this novel staining procedure with glycan analysis using porcine gastric mucin as a model mucin.

General Staining and Segmentation Procedures for High Content Imaging and Analysis.

Science.gov (United States)

Chambers, Kevin M; Mandavilli, Bhaskar S; Dolman, Nick J; Janes, Michael S

2018-01-01

Automated quantitative fluorescence microscopy, also known as high content imaging (HCI), is a rapidly growing analytical approach in cell biology. Because automated image analysis relies heavily on robust demarcation of cells and subcellular regions, reliable methods for labeling cells is a critical component of the HCI workflow. Labeling of cells for image segmentation is typically performed with fluorescent probes that bind DNA for nuclear-based cell demarcation or with those which react with proteins for image analysis based on whole cell staining. These reagents, along with instrument and software settings, play an important role in the successful segmentation of cells in a population for automated and quantitative image analysis. In this chapter, we describe standard procedures for labeling and image segmentation in both live and fixed cell samples. The chapter will also provide troubleshooting guidelines for some of the common problems associated with these aspects of HCI.

Oxygen and carbon isotopes of Recent calcareous nannofossils as paleoceanographic indicators

International Nuclear Information System (INIS)

Goodney, D.E.; Margolis, S.V.; Dudley, W.C.; Kroopnick, P.; Williams, D.F.

1980-01-01

Delta 18 O and delta 13 C values for several species of planktonic foraminifera and calcareous nannofossils from Recent deep-sea sediments have been studied in order to evaluate their paleoceanographic and paleotemperature potential. Nannofossils from Indian Ocean core-tops reflect isotopic temperatures as warm as, or warmer than, the temperatures reported for shallow-dwelling planktonic forminifera from the same samples. In general, deep-sea sediment samples from the world's major oceans indicate that nannofossil delta 18 O values are from 0.5 to 1 per thousand heavier than shallow-dwelling planktonic foraminifera. Although nannofossil delta 18 O values depart from thermodynamic equilibrium with oceanic surface water temperatures, the delta 18 O temperature trend parallels that of surface-dwelling planktonic foraminifera. Nannofossil delta 13 C values also depart equilibrium with surface water delta 13 C-ΣCO 2 values. A comparison of nannofossil delta 13 C data with that from planktonic foraminifera suggests that the rate of primary productivity in different water masses may be influencing the delta 13 C carbonate-secreting phytoplankton and zooplankton. (Auth.)

Evidence of compositional and ultrastructural shifts during the development of calcareous tubes in the biofouling tubeworm, Hydroides elegans.

Science.gov (United States)

Chan, Vera Bin San; Vinn, Olev; Li, Chaoyi; Lu, Xingwen; Kudryavtsev, Anatoliy B; Schopf, J William; Shih, Kaimin; Zhang, Tong; Thiyagarajan, Vengatesen

2015-03-01

The serpulid tubeworm, Hydroides elegans, is an ecologically and economically important species whose biology has been fairly well studied, especially in the context of larval development and settlement on man-made objects (biofouling). Nevertheless, ontogenetic changes associated with calcareous tube composition and structures have not yet been studied. Here, the ultrastructure and composition of the calcareous tubes built by H. elegans was examined in the three early calcifying juvenile stages and in the adult using XRD, FTIR, ICP-OES, SEM and Raman spectroscopy. Ontogenetic shifts in carbonate mineralogy were observed, for example, juvenile tubes contained more amorphous calcium carbonate and were predominantly aragonitic whereas adult tubes were bimineralic with considerably more calcite. The mineral composition gradually shifted during the tube development as shown by a decrease in Sr/Ca and an increase of Mg/Ca ratios with the tubeworm's age. The inner tube layer contained calcite, whereas the outer layer contained aragonite. Similarly, the tube complexity in terms of ultrastructure was associated with development. The sequential appearance of unoriented ultrastructures followed by oriented ultrastructures may reflect the evolutionary history of serpulid tube biominerals. As aragonitic structures are more susceptible to dissolution under ocean acidification (OA) conditions but are more difficult to be removed by anti-fouling treatments, the early developmental stages of the tubeworms may be vulnerable to OA but act as the important target for biofouling control. Copyright © 2015 Elsevier Inc. All rights reserved.

Improved Nissl method to stain formaldehyde or glutaraldehyde-fixed material.

Science.gov (United States)

Böck, P

1979-05-15

Nissl staining of paraffin sections from formaldehyde- or glutaraldehyde-fixed specimens is significantly intensified when sections are kept in a 50% (w/v) aqueous solution of potassium metabisulfite before being stained by a conventional Nissl method.

More Pitfalls with Sperm Viability Staining and a Viability-Based Stress Test to Characterize Sperm Quality

Directory of Open Access Journals (Sweden)

Barbara A. Eckel

2017-12-01

Full Text Available Sperm viability (SV, the proportion of live sperm in a sample, is a widely applied measure of sperm quality but few studies test its robustness. At least three reasons make SV problematic as a surrogate for sperm quality. First, reviewing the ecological literature revealed that previously identified methodological pitfalls have not been overcome, including low cross-study standardization of protocols, inadequate statistical treatment, and unaccounted for within-sample heterogeneity. Second, SV is affected by biological variation such as between species, reproductive organs, or sperm age cohorts. Third, the proportion of live sperm extracted from males appears more related to male than to sperm quality in the sense of the future performance of sperm. We propose an alternative method to assess sperm quality by characterizing the temporal decrease of SV in a stressor medium and illustrate in two species, the common bedbug (Cimex lectularius and the fruit fly (Drosophila melanogaster how some common methodological pitfalls may be circumvented. Our data empirically support the well-known but little-considered facts that (i non-blind measurements may alter SV and (ii that SV frequently have non-significant repeatability within one sample. (iii Cross-sectional sampling of ejaculates showed that this heterogeneity even masked a biological pattern—the sperm stratification within males. We show (iv that this shortcoming can be overcome by following the temporal decline of SV of a sperm subsample in a stress test. Finally, (v comparing the staining pattern of sperm between Cimex and Drosophila, we found that in the latter, the visibility of sperm is substantially delayed (30 min when sperm density is high. We show that this delay in stained sperm visibility was, however, not biased toward dead or live sperm. To measure sperm quality, we advocate analyzing the temporal decline in SV in a stressor medium over current protocols that use SV per se and

Technique and Feasibility of a Dual Staining Method for Estrogen Receptors and AgNORs

Directory of Open Access Journals (Sweden)

Lukas Günther

2000-01-01

Full Text Available A new staining method for dual demonstration of Estrogen receptors (ER and argyrophilc Nucleolus‐Organizer Regions (AgNORs was developed. To rule out possible reciprocal effects, serial slides of 10 invasive ductale breast cancers were stained with either the single staining method or the simultaneous ER/AgNOR‐staining method and investigated comparatively. By measuring the slides with the image analysis system AMBA, reciprocal effects could be excluded. It was proven that dual staining of both markers results in a reproducible and specific staining result. We concluded that it is justified to measure AgNORs in immunohistochemically stained cells.

Ocular melanoma metastatic to skin: the value of HMB-45 staining.

Science.gov (United States)

Schwartz, Robert A; Kist, Joseph M; Thomas, Isabelle; Fernández, Geover; Cruz, Manuel A; Koziorynska, Ewa I; Lambert, W Clark

2004-06-01

Cutaneous metastatic disease is an important finding that may represent the first sign of systemic cancer, or, if already known, that may change tumor staging and thus dramatically altered therapeutic plans. Although cutaneous metastases are relatively frequent in patients with cutaneous melanoma, they are less so from ocular melanoma. To demonstrate the value of HMB-45, staining in the detection of ocular melanoma metastatic to skin. The immunohistochemical stain HMB-45 a monoclonal antibody directed against intact human melanoma cells, was employed on a skin biopsy specimen from a cutaneous tumor. HMB-45 staining was positive in the atypical hyperchromatic cells of the deep dermis. HMB-45 may be of value in the detection of ocular melanoma metastatic to skin. Cutaneous metastatic disease is a somewhat common and extremely important diagnosis. Although cutaneous metastases from cutaneous melanoma are relatively frequent, those from ocular melanomas are less so. Use of histochemical staining, especially the HMB-45 stain, allows confirmation of the diagnosis.

Distinguishing Biologically Controlled Calcareous Biomineralization in Fossil Organisms Using Electron Backscatter Diffraction (EBSD)

Science.gov (United States)

Päßler, Jan-Filip; Jarochowska, Emilia; Bestmann, Michel; Munnecke, Axel

2018-02-01

Although carbonate-precipitating cyanobacteria are ubiquitous in aquatic ecosystems today, the criteria used to identify them in the geological record are subjective and rarely testable. Differences in the mode of biomineralization between cyanobacteria and eukaryotes, i.e. biologically induced calcification (BIM) vs. biologically controlled calcification (BCM), result in different crystallographic structures which might be used as a criterion to test cyanobacterial affinities. Cyanobacteria are often used as a ‘wastebasket taxon’, to which various microfossils are assigned. The lack of a testable criterion for the identification of cyanobacteria may bias their fossil record severely. We employed electron backscatter diffraction (EBSD) to investigate the structure of calcareous skeletons in two microproblematica widespread in Palaeozoic marine ecosystems: Rothpletzella, hypothesized to be a cyanobacterium, and an incertae sedis microorganism Allonema. We used a calcareous trilobite shell as a BCM reference. The mineralized structure of Allonema has a simple single-layered structure of acicular crystals perpendicular to the surface of the organism. The c-axes of these crystals are parallel to the elongation and thereby normal to the surface of the organism. EBSD pole figures and misorientation axes distribution reveal a fibre texture around the c-axis with a small degree of variation (up to 30°), indicating a highly ordered structure. A comparable pattern was found in the trilobite shell. This structure allows excluding biologically induced mineralization as the mechanism of shell formation in Allonema. In Rothpletzella, the c-axes of the microcrystalline sheath show a broader clustering compared to Allonema, but still reveal crystals tending to be perpendicular to the surface of the organism. The misorientation axes of adjacent crystals show an approximately random distribution. Rothpletzella also shares morphological similarities with extant cyanobacteria. We

Age estimation of blood stains by hemoglobin derivative determination using reflectance spectroscopy

NARCIS (Netherlands)

Bremmer, Rolf H.; Nadort, Annemarie; van Leeuwen, Ton G.; van Gemert, Martin J. C.; Aalders, Maurice C. G.

2011-01-01

Blood stains can be crucial in reconstructing crime events. However, no reliable methods are currently available to establish the age of a blood stain on the crime scene. We show that determining the fractions of three hemoglobin derivatives in a blood stain at various ages enables relating these

[Intrapartum amnioinfusion in patients with meconium-stained amniotic fluid].

Science.gov (United States)

Engel, Karina; Samborska, Monika; Bilar, Marek; Sipak-Szmigiel, Olimpia; Ronin-Walknowska, Elzbieta

2008-09-01

The aim of the study was to evaluate the effect of intrapartum amnioinfusion in the presence of meconium stained amniotic fluid. 93 women with meconium-stained amniotic fluid were assigned to receive amnioinfusion or no amnioinfusion (128 women). The trials were evaluated for fetal distress syndrome, route of delivery, fetal acidemia, Apgar score at 1 and 5 min., meconium aspiration syndrome, postpartum endometritis and maternal hospital stays. Amnioinfusion in cases of meconium-stained fluid did not improve the number of fetal distress symptoms during fetal heart rate monitoring. Amnioinfusion was associated with a significant decrease of neonatal acidemia although it did not improve Apgar score. In our study amnioinfusion was not associated with reduction in the incidence of neonatal outcome and puerperial complications.

Is the gram stain useful in the microbiologic diagnosis of VAP? A meta-analysis.

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O'Horo, John C; Thompson, Deb; Safdar, Nasia

2012-08-01

In a meta-analysis examining respiratory specimen Gram stain for diagnosis of ventilator-associated pneumonia, absence of bacteria on Gram stain had a high negative predictive value, but a positive Gram stain correlated poorly with organisms recovered in culture. Rapid and accurate diagnosis of ventilator-associated pneumonia (VAP) is a major challenge and no generally accepted gold standard exists for VAP diagnosis. We conducted a meta-analysis to examine the role of respiratory specimen Gram stain to diagnose VAP, and the correlation with final culture results. In 21 studies, pooled sensitivity of Gram stain for VAP was 0.79 (95% confidence interval [CI], .77-0.81; P Gram stain for a VAP prevalence of 20%-30% was 91%, suggesting that VAP is unlikely with a negative Gram stain but the positive predictive value of Gram stain was only 40%. Pooled kappa was 0.42 for gram-positive organisms and 0.34 for gram-negative organisms, suggesting fair concordance between organisms on Gram stain and recovery by culture. Therefore, a positive Gram stain should not be used to narrow anti-infective therapy until culture results become available.

Comparison of Gram and Kopeloff stains in the diagnosis of bacterial vaginosis in pregnancy.

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Libman, Michael D; Kramer, Michael; Platt, Robert

2006-03-01

Bacterial vaginosis (BV) is commonly diagnosed by using the Nugent score, a semiquantitative scoring system to evaluate bacterial morphotypes on Gram stain of vaginal secretions. Some authors have suggested using the Kopeloff modification of the Gram stain. Asymptomatic BV in pregnancy has been associated with adverse outcomes. We performed both stains on simultaneously collected vaginal smears from 2652 women at 24-26 weeks of gestation. Gram staining gave significantly higher (more abnormal) Nugent scores than Kopeloff staining. Compared to the Kopeloff stain, the number of specimens graded as indeterminate or consistent with BV by Gram stain increased by 29% (469 versus 364, Pstaining was significantly better than Gram staining (agreement=74% versus 63%, intraclass correlation coefficient=0.87 versus 0.79, P<.05, 95% confidence intervals 0.85-0.89 and 0.75-0.82, respectively).

Staining human lymphocytes and onion root cell nuclei with madder root.

Science.gov (United States)

Cücer, N; Guler, N; Demirtas, H; Imamoğlu, N

2005-01-01

We performed staining experiments on cells using natural dyes and different mordants using techniques that are used for wool and silk dyeing. The natural dye sources were madder root, daisy, corn cockle and yellow weed. Ferrous sulfate, copper sulfate, potassium tartrate, urea, potassium aluminum sulfate and potassium dichromate were used as mordants. Distilled water, distilled water plus ethanol, heptane, and distilled water plus methanol were used as solvents. All dye-mordant-solvent combinations were studied at pH 2.4, 3.2 and 4.2. The generic staining procedure was to boil 5-10 onion roots or stimulated human lymphocyte (SHL) preparations in a dye bath on a hot plate. Cells were examined at every half hour. For multicolor staining, madder-dyed lymphocytes were decolorized, then stained with Giemsa. The AgNOR technique was performed following the decolorization of Giemsa stained lymphocytes. Good results were obtained for both onion root cells and lymphocytes that were boiled for 3 h in a dye bath that included 4 g madder root, 4 g ferrous sulfate as mordant in 50 ml of 1:1 (v/v) methanol:distilled water. The pH was adjusted to 4.2 with 6 ml acetic acid. We conclude that madder root has potential as an alternative dye for staining biological materials.

Improvement of malaria diagnostic system based on acridine orange staining.

Science.gov (United States)

Kimura, Masatsugu; Teramoto, Isao; Chan, Chim W; Idris, Zulkarnain Md; Kongere, James; Kagaya, Wataru; Kawamoto, Fumihiko; Asada, Ryoko; Isozumi, Rie; Kaneko, Akira

2018-02-07

Rapid diagnosis of malaria using acridine orange (AO) staining and a light microscope with a halogen lamp and interference filter was deployed in some malaria-endemic countries. However, it has not been widely adopted because: (1) the lamp was weak as an excitation light and the set-up did not work well under unstable power supply; and, (2) the staining of samples was frequently inconsistent. The halogen lamp was replaced by a low-cost, blue light-emitting diode (LED) lamp. Using a reformulated AO solution, the staining protocol was revised to make use of a concentration gradient instead of uniform staining. To evaluate this new AO diagnostic system, a pilot field study was conducted in the Lake Victoria basin in Kenya. Without staining failure, malaria infection status of about 100 samples was determined on-site per one microscopist per day, using the improved AO diagnostic system. The improved AO diagnosis had both higher overall sensitivity (46.1 vs 38.9%: p = 0.08) and specificity (99.0 vs 96.3%) than the Giemsa method (N = 1018), using PCR diagnosis as the standard. Consistent AO staining of thin blood films and rapid evaluation of malaria parasitaemia with the revised protocol produced superior results relative to the Giemsa method. This AO diagnostic system can be set up easily at low cost using an ordinary light microscope. It may supplement rapid diagnostic tests currently used in clinical settings in malaria-endemic countries, and may be considered as an inexpensive tool for case surveillance in malaria-eliminating countries.

Extreme diagenesis displayed by Pliocene-Pleistocene Calcareous Nannofossils in IODP Hole 1396A, adjacent to Montserrat Island in the Lesser Antilles

Science.gov (United States)

Aljahdali, M. H.; Behzad, A.; Missimer, T. M.; Wise, S. W.; Scientists, E.

2013-12-01

Adjacent to Montserrat Island in the Lesser Antilles of the Caribbean Sea, Integrated Ocean Drilling Program (IODP) Site 1396 recovered lower Pliocene to Pleistocene calcareous nannofossil assemblages (CN11 to CN15) that range between common to abundant and display a variety of preservations. High-resolution Scanning Electron Microscopy (SEM) observation of calcareous nannofossil assemblages in selected samples from Hole 1396A, shows severe diagenesis (overgrowth and/or dissolution) even near the top of the sequence. The nannofossil assemblages in this relatively shallow basin (e.g., 800 m) reveal abnormal diagenesis for such young specimens that are quite similar to the heavy overgrowths and dissolution generally seen only in older deposits (e.g., Cretaceous). Our hypothesis is that volcanic activity in the region probably induced this extreme diagenesis. A more detailed examination of these samples should provide a better understanding of the progression of carbonate diagenesis in this basin. The nannofossil biostratigraphy and magnetostratigraphy at Site 1396 also suggest lower sedimentation rates in the Pleistocene than in the Pliocene. A comparison site (ODP Leg 165 Site 1000) in the Caribbean Sea also shows a similar sedimentation-rate pattern. This we interpret as a regional event caused by the closure of the Central American Seaway.

Efficiency of a new strategy involving a new class of natural hetero-ligand iron(III) chelates (Fe(III)-NHL) to improve fruit tree growth in alkaline/calcareous soils.

Science.gov (United States)

Fuentes, Marta; Ortuño, María F; Pérez-Sarmiento, Francisco; Bacaicoa, Eva; Baigorri, Roberto; Conejero, Wenceslao; Torrecillas, Arturo; García-Mina, José M

2012-12-01

Iron (Fe) chlorosis is a serious problem affecting the yield and quality of numerous crops and fruit trees cultivated in alkaline/calcareous soils. This paper describes the efficiency of a new class of natural hetero-ligand Fe(III) chelates (Fe-NHL) to provide available Fe for chlorotic lemon trees grown in alkaline/calcareous soils. These chelates involve the participation in the reaction system of a partially humified lignin-based natural polymer and citric acid. First results showed that Fe-NHL was adsorbed on the soil matrix while maintaining available Fe for plants in alkaline/calcareous solution. The effects of using three different sources as Fe fertilisers were also compared: two Fe-NHL formulations (NHL1, containing 100% of Fe as Fe-NHL, and NHL2, containing 80% of Fe as Fe-NHL and 20% of Fe as Fe-ethylenediamine-N,N'-bis-(o-hydroxyphenylacetic) acid (Fe-EDDHA)) and Fe-EDDHA. Both Fe-NHL formulations increased fruit yield without negative effects on fruit quality in comparison with Fe-EDDHA. In the absence of the Fe-starter fraction (NHL1), trees seemed to optimise Fe assimilation and translocation from Fe-NHL, directing it to those parts of the plant more involved in development. The field assays confirmed that Fe-NHL-based fertilisers are able to provide Fe to chlorotic trees, with results comparable to Fe-EDDHA. Besides, this would imply a more sustainable and less expensive remediation than synthetic chelates. Copyright © 2012 Society of Chemical Industry.

A phosphorescent silver(I)-gold (I) cluster complex that specifically lights up the nucleolus of living cells with FLIM imaging.

Science.gov (United States)

Chen, Min; Lei, Zhen; Feng, Wei; Li, Chunyan; Wang, Quan-Ming; Li, Fuyou

2013-06-01

The phosphorescent silver(I)-gold(I) cluster complex [CAu6Ag2(dppy)6](BF4)4 (N1) selectively stains the nucleolus, with a much lower uptake in the nucleus and cytoplasm, and exhibits excellent photostability. This Ag-Au cluster, which has a photoluminescent lifetime of microseconds, is particularly attractive as a probe in applications of time-gated microscopy. Investigation of the pathway of cellular entry indicated that N1 permeates the outer membrane and nuclear membrane of living cells through an energy-dependent and non-endocytic route within 10 min. High concentrations of N1 in the nucleolus have been quantified by inductively coupled plasma atomic emission spectroscopy (ICP-AES) and transmission electron microscopy coupled with an energy dispersive X-ray analysis (TEM-EDXA), which also helped to elucidate the mechanism of the specific staining. Intracellular selective staining may be correlated with the microenvironment of the nucleolus, which is consistent with experiments conducted at different phases of the cell cycle. These results prove that N1 is a very attractive phosphorescent staining reagent for visualizing the nucleolus of living cells. Copyright © 2013 Elsevier Ltd. All rights reserved.

Firing transformations of an argentinean calcareous commercial clay

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M. F. Serra

2013-06-01

Full Text Available Mineralogical transformations caused by firing are usually studied by XRD methods only semi-quantitatively. In this work the original mineral disappearance and the neo-mineralization were evaluated quantitatively. Furthermore an indirect non crystalline phase quantification was performed under 1100 ºC was also carried out using the quartz content as internal standard. This study specifically discusses the behavior of an Argentinean white calcareous earthenware commercial when subjected to traditional ceramic firing, besides the technological importance of this particular material, it acts as a model for other clay based ceramic materials. Materials were subjected to thermal treatments between 700 ºC and 1100 ºC. A preliminary sintering characterization was carried out by contraction and porosity evolution. Simultaneous thermogravimetric and differential thermal analysis (TG-DTA was carried out to elucidate the actual temperature at which the chemical changes occur. Finally, a quantitative analysis based on the Rietveld refinement of the X-ray diffraction patterns was performed to characterize the crystalline phases present in both the clay and in the materials obtained after different thermal treatments. The actual chemical reactions are proposed. The phases identified after firing at traditional working temperature (1040 ºC are quartz, plagioclase, and the Spinel type alumino-silicate, accompanied by the non-diffracting un-reacted metakaolin and some amount of amorphous glassy phase. At intermediate temperatures (900 ºC the presence of gehlenite was also detected. The carbonates (calcite and dolomite presence and decomposition were also evaluated and demonstrated to determine the sintering characteristics of this material.

[Automated analysis of bacterial preparations manufactured on automatic heat fixation and staining equipment].

Science.gov (United States)

2012-01-01

Heat fixation of preparations was made in the fixation bath designed by EMKO (Russia). Programmable "Emkosteiner" (EMKO, Russia) was used for trial staining. Reagents set Micko-GRAM-NITsF was applied for Gram's method of staining. It was demostrated that automatic smear fixation equipment and programmable staining ensure high-quality imaging (1% chromaticity variation) good enough for standardization of Gram's staining of microbial preparations.

Mechanisms of superficial micropunctate corneal staining with sodium fluorescein: the contribution of pooling.

Science.gov (United States)

Bandamwar, Kalika L; Garrett, Qian; Papas, Eric B

2012-04-01

To establish if sodium fluorescein (SFL) dye accumulation within intercellular spaces on the ocular surface contributes to the appearance of superficial punctate corneal staining. Thirteen subjects bilaterally wore PureVision™ lenses that had been pre-soaked in ReNu MultiPlus® multipurpose solution. After 1h of lens wear, corneal staining with SFL was assessed using a standard slit-lamp technique. Participants who presented with bilateral, corneal staining were selected for further evaluation. A randomly selected eye was rinsed with saline three times. Fellow eyes (control) received no rinsing. After each rinse, the appearance of SFL staining was recorded without any further instillation of the dye. To eliminate any confounding effects of staining due to residual fluorescein in the tear menisci, corneal staining was induced in freshly excised, isolated, rabbit eyes by topical administration of 0.001% PHMB and staining, rinsing and grading were performed as above. Nine out of 13 subjects presented with bilateral diffuse corneal staining (mean grade±SD: 2.4±0.7). The mean staining grades in test and control eyes respectively after each of the three rinses were (1) 2.41±0.41, 2.25±0.69 (p=0.9); (2) 2.34±0.79, 2.1±0.83 (p=0.8); and (3) 1.71±0.65, 1.60±0.79 (p=0.6) there was no significant reduction in staining with rinsing (p>0.05) and no difference was observed between test and control eyes at any sampling-point. Similar observations made in ex vivo rabbit eyes replicated these results. Pooling or accumulation of SFL solution within intercellular spaces does not appear to contribute to the appearance of superficial micropunctate corneal staining. Copyright © 2011 British Contact Lens Association. Published by Elsevier Ltd. All rights reserved.

Digital simulation of staining in histopathology multispectral images: enhancement and linear transformation of spectral transmittance.

Science.gov (United States)

Bautista, Pinky A; Yagi, Yukako

2012-05-01

Hematoxylin and eosin (H&E) stain is currently the most popular for routine histopathology staining. Special and/or immuno-histochemical (IHC) staining is often requested to further corroborate the initial diagnosis on H&E stained tissue sections. Digital simulation of staining (or digital staining) can be a very valuable tool to produce the desired stained images from the H&E stained tissue sections instantaneously. We present an approach to digital staining of histopathology multispectral images by combining the effects of spectral enhancement and spectral transformation. Spectral enhancement is accomplished by shifting the N-band original spectrum of the multispectral pixel with the weighted difference between the pixel's original and estimated spectrum; the spectrum is estimated using M transformed to the spectral configuration associated to its reaction to a specific stain by utilizing an N × N transformation matrix, which is derived through application of least mean squares method to the enhanced and target spectral transmittance samples of the different tissue components found in the image. Results of our experiments on the digital conversion of an H&E stained multispectral image to its Masson's trichrome stained equivalent show the viability of the method.

Characterization of bacterial diversity associated with calcareous deposits and drip-waters, and isolation of calcifying bacteria from two Colombian mines.

Science.gov (United States)

García G, Mariandrea; Márquez G, Marco Antonio; Moreno H, Claudia Ximena

2016-01-01

Bacterial carbonate precipitation has implications in geological processes and important biotechnological applications. Bacteria capable of precipitating carbonates have been isolated from different calcium carbonate deposits (speleothems) in caves, soil, freshwater and seawater around the world. However, the diversity of bacteria from calcareous deposits in Colombia, and their ability to precipitate carbonates, remains unknown. In this study, conventional microbiological methods and molecular tools, such as temporal temperature gradient electrophoresis (TTGE), were used to assess the composition of bacterial communities associated with carbonate deposits and drip-waters from two Colombian mines. A genetic analysis of these bacterial communities revealed a similar level of diversity, based on the number of bands detected using TTGE. The dominant phylogenetic affiliations of the bacteria, determined using 16S rRNA gene sequencing, were grouped into two phyla: Proteobacteria and Firmicutes. Within these phyla, seven genera were capable of precipitating calcium carbonates: Lysinibacillus, Bacillus, Strenotophomonas, Brevibacillus, Methylobacterium, Aeromicrobium and Acinetobacter. FTIR and SEM/EDX were used to analyze calcium carbonate crystals produced by isolated Acinetobacter gyllenbergii. The results showed that rhombohedral and angular calcite crystals with sizes of 90μm were precipitated. This research provides information regarding the presence of complex bacterial communities in secondary carbonate deposits from mines and their ability to precipitate calcium carbonate from calcareous deposits of Colombian mines. Copyright © 2015 Elsevier GmbH. All rights reserved.

Weathering of a Roman Mosaic-A Biological and Quantitative Study on In Vitro Colonization of Calcareous Tesserae by Phototrophic Microorganisms.

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Addolorata Marasco

Full Text Available The potential impact of cyanobacteria and microalgae on the weathering of calcareous tesserae from a Roman mosaic of the II Century CE has been followed through in vitro experiments. Laboratory tests were carried out by inoculating mosaic tiles with single strains of Cyanobacteria or Chlorophyta to evaluate the roles of pioneer phototrophic microrganism on the resulting architecture of biofilms. The interaction between tesserae and strains was assessed at the whole substratum and micrometer scales, by image analysis and Confocal Laser Scanning (CLS microscopy, respectively. The biofilm surface coverage on each tessera varied from 19% (Fischerella ambigua to 97% (Microcoleus autumnalis. Cyanobacteria showed a better growth on calcareous tesserae, whereas the only green alga attaining a superficial coverage higher than 50% was Coelastrella rubescens. CLS microscopy evidenced two different types of spatial arrangement of the phototrophic organisms on the tesserae, that were defined as compact or porous, respectively. In the first one was measured a reduced number of empty spaces between cells or filaments, whereas in the second type, a reticulate texture allowed the presence of numerous empty volumes. The colonization processes observed are an intrinsic characteristic of each strain. We have proposed a colonization index IC as a sensible tool to describe, in a quantitative way, the pioneering attitude of each photosynthetic microorganism to colonize lithic substrates under laboratory conditions.

Stain removal and whitening by baking soda dentifrice: A review of literature.

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Li, Yiming

2017-11-01

Tooth discoloration may be caused by intrinsic or extrinsic stains or a combination of both. There are 2 major approaches to removing the stains, including the chemical mechanism using peroxides for tooth bleaching and the mechanical mechanism using abrasives in prophylactic pastes and dentifrices to remove stains, resulting in a whitening effect. Attempts have also been made to add a low concentration of peroxides to dentifrices to enhance their abrasive cleaning to remove tooth stains. This article provides a review of both in vitro and clinical studies on stain removal and whitening effect of dentifrices containing sodium bicarbonate (baking soda). In recent years, whitening dentifrices have become popular because of little additional effort for use, ease of availability, low cost, and accumulated evidence of clinical efficacy and safety in the literature. Advances in research and technology have led to innovative formulations of dentifrices using baking soda as the sole abrasive or a component of an abrasive system. Baking soda is biologically compatible with acid-buffering capacities, antibacterial at high concentrations, and has a relatively lower abrasivity. The evidence available in the literature indicates that baking soda-based dentifrices are effective and safe for tooth stain removal and consequently whitening. A number of clinical studies have also shown that baking soda-based dentifrices are more effective in stain removal and whitening than some non-baking soda-containing dentifrices with a higher abrasivity. So far, research efforts have mainly focused on stain removal and tooth-whitening efficacy and clinical safety of baking soda dentifrices used with manual toothbrushes, with only a few studies investigating their effects using powered toothbrushes, for which further research is encouraged. As part of a daily oral hygiene practice, baking soda-based dentifrice is a desirable, alternative or additional measure for tooth stain removal and whitening

Discrimination of p53 immunohistochemistry-positive tumors by its staining pattern in gastric cancer

International Nuclear Information System (INIS)

Ando, Koji; Oki, Eiji; Saeki, Hiroshi; Yan, Zhao; Tsuda, Yasuo; Hidaka, Gen; Kasagi, Yuta; Otsu, Hajime; Kawano, Hiroyuki; Kitao, Hiroyuki; Morita, Masaru; Maehara, Yoshihiko

2015-01-01

Immunohistochemistry staining of p53 is a cheap and simple method to detect aberrant function of p53. However, there are some discrepancies between the result of immunohistochemistry staining and mutation analysis. This study attempted to find a new definition of p53 staining by its staining pattern. Immunohistochemistry staining of p53 and TP53 gene mutation analysis were performed in 148 gastric cancer patients. Also SNP-CGH array analysis was conducted to four cases. Positive staining of p53 was observed in 88 (59.5%) tumors. Tumors with positive p53 staining showed malignant features compared to negative tumors. Mutation of TP53 gene was observed in 29 (19.6%) tumors with higher age and differentiated type. In positive p53 tumors, two types could be distinguished; aberrant type and scattered type. With comparison to TP53 gene mutation analysis, all the scattered type had wild-type TP53 gene (P = 0.0003). SNP-CGH array showed that scattered-type tumors had no change in the structure of chromosome 17. P53-scattered-type staining tumors may reflect a functionally active nonmutated TP53 gene. In interpretation of p53 immunohistochemistry staining, distinguishing p53-positive tumors by their staining pattern may be important in gastric cancer

"Stain in life": The meaning of urinary incontinence in the context of Muslim postmenopausal women through hermeneutic phenomenology.

Science.gov (United States)

Hamid, Tengku Aizan; Pakgohar, Minoo; Ibrahim, Rahimah; Dastjerdi, Marzieh Vahid

2015-01-01

UI is a worldwide chronic condition among postmenopausal women. Little is known about the meaning of lived experiences of urinary incontinence of these women's viewpoints in their context. The aim of this study was to illuminate the experience of Muslim community-dwelling postmenopausal women who were living with urinary incontinence (UI). Seventeen women with UI (range: 52-68 years) who had experienced it for more than ten years were interviewed. A phenomenological hermeneutic method was used to analyze and interpret the interview texts. The women's experiences of living with urinary incontinence have been presented in terms of three main themes: disruption of normal functioning, self-imposed restriction, and feelings of despair. Disruption of normal functioning meant emotional, spiritual, physical, and daily life disruption. Self-imposed restriction meant suppression of delights and needs and avoidance of social interactions. Feelings of despair referred to predictions of a bad and dark future of living with urinary incontinence, ambiguity, and hopelessness. The meaning of living with UI has been considered a 'stain in life'. Health care providers should be familiar with the different manifestations of urinary incontinence for early diagnosis and prevention of the negative effects of this condition to improve quality of life. In addition, symbolic interactionism theory can help health care providers to understand the meaning of urinary incontinence for women. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Stable isotopic information on calcareous pelitic rocks in the Tizapa volcanogenic massive sulfide deposit area, the United Mexican States

International Nuclear Information System (INIS)

Morozumi, Haruhisa; Metsugi, Hideya; Kita, Yoshiyuki; Suzuki, Toru

1999-01-01

Tizapa volcanogenic massive sulfide (VMS) deposit is hosted in greenschist facies metamorphic rocks; footwall is green schist of felsic to mafic metavolcanic rocks and hanging wall is graphite schist of metasedimentary pelitic rock. Pb-Pb dating of ore samples indicates 103.4Ma to 156.3Ma for the age of mineralization (JICA/MMAJ, 1991). Hanging wall graphite schist is partially calcareous and overlaid by upper formations consisting of calcareous shake and limestone. δ 13 C(per mille) PDB values were measured for carbonate and organic material in the graphite schist, and δ 18 O(per mille) SMOW values were also measured for same carbonate. Although carbonate and organic material were affected by the metamorphism after mineralization, δ 18 O of carbonate decreases from +22.1 per mille to +17.9 per mille, δ 13 C of carbonate decreases from +0.8 per mille to -4.3 per mille and δ 13 C of organic material decreases from -10.0 per mille to -15.6 per mille with the decrease of vertical distances to ore deposit from 54.20 m to 10.28 m. This phenomenon might indicate the change of sedimentary environment of the reduced condition where the sulfides were precipitated, with the change of temperature. If this assumption is adequate, the method applied in this study is useful for semi-quantitative evaluation to distinguish the favorable condition for the precipitation of sulfides of VMS. (author)

The use of special stains in liver biopsy interpretation: Implications ...

African Journals Online (AJOL)

Materials and Methods: The formalin fixed paraffin embedded blocks of liver biopsies reported in two histopathology laboratories between 2008 and 2013 were retrieved. These were stained with H and E and the following standard special stains for liver tissue histology – Perl's Prussian blue, reticulin, Sirius red, Shikata ...

TANTANGAN DAN PELUANG JURUSAN TADRIS DI IAIN/STAIN

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Mohammad Kosim

2009-01-01

Full Text Available A consequence of dualism in education policy, the implementatin of tadris in IAIN often faces many problems. This paper will describe the history and the development of tadris in IAIN/STAIN. The discussion begins with the origin of tadris in IAIN, problems araise in the implementation of tadris in IAIN/STAIN, including the alumni’s problem. In addition, this article also reveals several opportunities for tadris graduation to develop madrasah as purely religious school to public islamic school as the result of the paradigm change.

Utility of Acridine Orange staining for detection of bacteria from positive blood cultures.

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Neeraja, M; Lakshmi, V; Padmasri, C; Padmaja, K

2017-08-01

The diagnostic performance of AO stain was evaluated for the detection of bacteria and or fungi from positive blood cultures. The sensitivity of Gram stain (GS) was 98.26% while Acridine Orange (AO) stain proved to be more sensitive (100%) with a Positive and Negative Predictive Value of 100% each. The specificity of both the stains was 100%. Overall agreement between the two stains was 98.23% (688/700). The organisms that were missed by GS and positive by AO were Candida species (Sutton, 2006) and Gram negative bacilli (GNB) (Sutton, 2006). Sensitivity of GS was 82.35% and AO was 100% among mixed cultures. Immediate reporting of the results of AO stain would have a significant impact on clinical management of patients with serious blood stream infections. Copyright © 2017 Elsevier B.V. All rights reserved.

Indirect immunofluorescence staining of Chlamydia trachomatis inclusions in microculture plates with monoclonal antibodies.

Science.gov (United States)

Zapata, M; Chernesky, M; Mahony, J

1984-06-01

Indirect immunofluorescence (IF) staining, using a monoclonal antibody, detected two- to fourfold more inclusions than did iodine staining. Of 274 clinical specimens, 53 (19.3%) were positive by IF on passage 1 as compared with 33 (12%) by iodine staining (P less than 0.005). IF-stained inclusions in McCoy cells in the bottom of microculture wells were readily viewed with a long-focal-length objective at a magnification of 250 X.

Indirect immunofluorescence staining of Chlamydia trachomatis inclusions in microculture plates with monoclonal antibodies.

OpenAIRE

Zapata, M; Chernesky, M; Mahony, J

1984-01-01

Indirect immunofluorescence (IF) staining, using a monoclonal antibody, detected two- to fourfold more inclusions than did iodine staining. Of 274 clinical specimens, 53 (19.3%) were positive by IF on passage 1 as compared with 33 (12%) by iodine staining (P less than 0.005). IF-stained inclusions in McCoy cells in the bottom of microculture wells were readily viewed with a long-focal-length objective at a magnification of 250 X.

Novel Approach of Differential Staining to Detect Necrotic Cells in Preimplantation Embryos

Directory of Open Access Journals (Sweden)

Mohammad Hossein Nasr Esfahani

2007-01-01

Full Text Available Background: This novel approach describes a rapid and simple method for identification of necrotic vs. viable cells within a mammalian blastocyst.Materials and Methods: Hatched bovine blastocysts produced in vitro were first incubated for 30 min in pre-equilibrated culture medium containing propidium iodide (PI; 300μg/ml and bisbenzimide (Hoechst: H33342; 5μg/ml fluorescent dyes. Embryos were then freed from residual dyes by thoroughly washing in warm phosphate buffer saline free of calcium and magnesium (PBS-, fixed in 2.5% glutharaldehyde and washed again in PBS- . Stained embryos afterwards were mounted in a drop of glycerol over a microscopic slide. Prepared samples were examined under an epifluorescent microscope using the same excitation wavelength (330-385nm and barrier filter (400nm to distinguish necrosed vs. viable blastomers as being appeared in red and blue, respectively.Results: Obtained results showed that in cells with altered cell membrane such as late apoptotic or necrotic cells, PI and H33342 readily enter through the cytoplasmic barriers and so the chromatin materials are stained by both, but since PI quenches bisbenzimide fluorescence, necrotic blastomeres are seen in red to pinky red, while live cells are seen just as blue.Conclusion: Obtained results clearly indicated that this novel approach can be used as a simple, feasible and precise method for every embryology lab and with all the mammalian blastocysts produced either in vitro or in vivo. The basic assay can be completed in 60 min, and valuable and reliable information can be obtained about the quality of the embryos.

Photoacoustic Imaging of Port-Wine Stains

NARCIS (Netherlands)

Kolkman, R.G.M.; Mulder, M.J.; Mulder, Miranda J.; Glade, Conrad P.; Steenbergen, Wiendelt; van Leeuwen, Ton

2008-01-01

Background and Objective: To optimize laser therapy of port-wine stains (PWSs), information about the vasculature as well as lesion depth is valuable. In this study we investigated the use of photoacoustic imaging (PAI) to obtain this information. - Study Design/Materials and Methods: PAI uses

Identification criteria of the rare multi-flagellate Lophomonas blattarum: comparison of different staining techniques.

Science.gov (United States)

Alam-Eldin, Yosra Hussein; Abdulaziz, Amany Mamdouh

2015-09-01

Bronchopulmonary lophomoniasis (BPL) is an emerging disease of potential importance. BPL is presented by non-specific clinical picture and is usually accompanied by immunosuppression. Culture of Lophomonas blattarum is difficult and its molecular diagnosis has not yet been developed. Therefore, microscopic examination of respiratory samples, e.g., bronchoalveolar lavage (BAL) or sputum, is the mainstay of BPL diagnosis. Creola bodies and ciliocytophthoria are two forms of bronchial cells which occur in chest diseases with non-specific clinical picture like that of BPL. Both forms could be misrecognized as multi-flagellates because of their motile cilia in the wet mounts and due to shape variability of L. blattarum in stained smears. The aim of the study is to compare different staining techniques for visualizing L. blattarum to improve the recognition and diagnosis of BPL, to distinguish respiratory epithelial cells from L. blattarum and to decide which stain is recommended in suspected cases of BPL. BAL samples from patients which contain L. blattarum, creola bodies, and ciliocytophthoria were collected then wet mounts were examined. The BAL samples were also stained by Papanicolaou (PAP), Giemsa, hematoxylin and eosin (H & E), trichrome, Gram, and Diff-Quik (DQ) stains. The different staining techniques were compared regarding the stain quality. In wet mounts, the ciliary movement was coordinate and synchronous while the flagellar movement was wavy and leaded to active swimming of L. blattarum. In stained slides, bronchial cells were characterized by the presence of basal nucleus and the terminal bar from which the cilia arise. Trichrome was the best stain in demonstration of cellular details of L. blattarum. H & E, PAP, and Giemsa stains showed good quality of stains. Gram and DQ stains showed only pale hues of L. blattarum. We recommended adding Wheatley's trichrome staining to the differential diagnosis workup of cases of non-specific chest infections

Measurement of neuron soma size by fluorescent Nissl stain

OpenAIRE

sprotocols

2015-01-01

Authors: James Cronk, Noel Derecki & Jonathan Kipnis ### Abstract This protocol describes how to measure neuron soma size by fluorescent Nissl stain. Mice are sacrificed, and fixed by PFA perfusion. Brains are removed, and further PFA fixed, followed by sucrose cryoprotection. They are then snap frozen, sliced by cryostat, and stained with fluorescent Nissl as floating sections. Confocal microscopy is used to take images of neurons, and a computer graphics tablet is used to calculate ...

Influence of flooding and metal immobilising soil amendments on availability of metals for willows and earthworms in calcareous dredged sediment-derived soils

Energy Technology Data Exchange (ETDEWEB)

Vandecasteele, Bart, E-mail: bart.vandecasteele@ilvo.vlaanderen.b [Institute for Agricultural and Fisheries Research (ILVO), Scientific Institute of the Flemish Government, Burg. Van Gansberghelaan 109, B-9820 Merelbeke (Belgium); Du Laing, Gijs [Ghent University, Department of Applied Analytical and Physical Chemistry, Coupure 653, B-9000 Ghent (Belgium); Lettens, Suzanna [Research Institute for Nature and Forest (INBO), Scientific Institute of the Flemish Government, Gaverstraat 4, B-9500 Geraardsbergen (Belgium); Jordaens, Kurt [Department of Biology, Evolutionary Biology Group, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium); Tack, Filip M.G. [Ghent University, Department of Applied Analytical and Physical Chemistry, Coupure 653, B-9000 Ghent (Belgium)

2010-06-15

Soil amendments previously shown to be effective in reducing metal bioavailability and/or mobility in calcareous metal-polluted soils were tested on a calcareous dredged sediment-derived soil with 26 mg Cd/kg dry soil, 2200 mg Cr/kg dry soil, 220 mg Pb/kg dry soil, and 3000 mg Zn/kg dry soil. The amendments were 5% modified aluminosilicate (AS), 10% w/w lignin, 1% w/w diammonium phosphate (DAP, (NH{sub 4}){sub 2}HPO{sub 4}), 1% w/w MnO, and 5% w/w CaSO{sub 4}. In an additional treatment, the contaminated soil was submerged. Endpoints were metal uptake in Salix cinerea and Lumbricus terrestris, and effect on oxidation-reduction potential (ORP) in submerged soils. Results illustrated that the selected soil amendments were not effective in reducing ecological risk to vegetation or soil inhabiting invertebrates, as metal uptake in willows and earthworms did not significantly decrease following their application. Flooding the polluted soil resulted in metal uptake in S. cinerea comparable with concentrations for an uncontaminated soil. - Some soil amendments resulted in higher metal uptake by earthworms and willows than when the polluted soil was not amended but submersion of the polluted soil resulted in reduced Cd and Zn uptake in Salix cinerea.

Evaluation of immunoperoxidase staining technique in the diagnosis of Acanthamoeba keratitis

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Sharma Savitri

2001-01-01

Full Text Available Purpose: We describe a simple procedure of Immunoperoxidase (IP technique, using indigenously raised antibody, to screen corneal scrapings for Acanthamoeba cysts and trophozoites. This study sought to determine the utility of this test in the diagnosis of Acanthamoeba keratitis. Methods: A high titre polyclonal antibody against a local clinical isolate (axenic of Acanthamoeba species (trophozoite lysate antigen was raised in rabbits and used for standardization of IP technique for corneal scrapings. Twenty two smears of corneal scrapings, collected from patients showing Acanthamoeba cysts in corneal scrapings stained with calcofluorwhite (pool-1 and patients showing no cysts in similar scrapings (pool-2, were coded and stained by IP technique by a masked technician. All 22 patients had also been tested for bacteria, fungus, and Acanthamoeba in their corneal scrapings by smears and cultures. IP stained smears were examined for organisms including cysts and trophozoites of Acanthamoeba and background staining by two observers masked to the results of other smears and cultures. The validity of the IP test in detection of Acanthamoeba cysts and trophozoites was measured by sensitivity, specificity, positive predictive value and negative predictive value in comparison (McNemar test for paired comparison with calcofluor white staining and culture. Results: Based on the readings of observer 1 and compared to calcofluor white staining, the IP test had a sensitivity of 100%, a specificity of 94%, positive predictive value of 80% and negative predictive value of 100%. When compared to culture, the values were 83%, 100%, 100% and 94% respectively. Trophozoites missed in calcofluor white stained smears, were detected in 2 out of 6 cases of culture-positive Acanthamoeba keratitis. The Kappa coefficient of interobserver agreement was determined as fair (30.4%. Conclusion: The immunoperoxidase technique is a simple and useful test in the diagnosis of

Hierarchical patch-based co-registration of differently stained histopathology slides

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Yigitsoy, Mehmet; Schmidt, Günter

2017-03-01

Over the past decades, digital pathology has emerged as an alternative way of looking at the tissue at subcellular level. It enables multiplexed analysis of different cell types at micron level. Information about cell types can be extracted by staining sections of a tissue block using different markers. However, robust fusion of structural and functional information from different stains is necessary for reproducible multiplexed analysis. Such a fusion can be obtained via image co-registration by establishing spatial correspondences between tissue sections. Spatial correspondences can then be used to transfer various statistics about cell types between sections. However, the multi-modal nature of images and sparse distribution of interesting cell types pose several challenges for the registration of differently stained tissue sections. In this work, we propose a co-registration framework that efficiently addresses such challenges. We present a hierarchical patch-based registration of intensity normalized tissue sections. Preliminary experiments demonstrate the potential of the proposed technique for the fusion of multi-modal information from differently stained digital histopathology sections.

Photoacoustic imaging of port-wine stains

NARCIS (Netherlands)

Kolkman, Roy G. M.; Mulder, Miranda J.; Glade, Conrad P.; Steenbergen, Wiendelt; van Leeuwen, Ton G.

2008-01-01

BACKGROUND AND OBJECTIVE: To optimize laser therapy of port-wine stains (PWSs), information about the vasculature as well as lesion depth is valuable. In this study we investigated the use of photoacoustic imaging (PAI) to obtain this information. STUDY DESIGN/MATERIALS AND METHODS: PAI uses pulsed

Colour stability, staining and roughness of silorane after prolonged chemical challenges

DEFF Research Database (Denmark)

Benetti, Ana Raquel; Ribeiro de Jesus, Vivian Cristiane Bueno; Martinelli, Natan Luiz

2013-01-01

methacrylate or silorane composites. Specimens were individually stored at 37°C in 0.02 N citric acid, 0.02 N phosphoric acid, 75% ethanol or distilled water for 7, 14, 21 and 180 days, when new measurements were performed. A staining test was performed after the chemical challenge by immersion in coffee...... considered acceptable (although significantly different) after immersion in water, citric acid, phosphoric acid or ethanol, but were unacceptable for the silorane composite immersed in ethanol for 180 days. The methacrylate-based resins stored in ethanol were significantly more stained by coffee than those...... stored in other media. The silorane composite demonstrated no staining, but increased roughness, when compared to the methacrylate-based resins. CONCLUSIONS: No effect of the immersion solution was noticed on roughness of the investigated materials. Ethanol influenced colour stability and staining...

Automated robust registration of grossly misregistered whole-slide images with varying stains

Science.gov (United States)

Litjens, G.; Safferling, K.; Grabe, N.

2016-03-01

Cancer diagnosis and pharmaceutical research increasingly depend on the accurate quantification of cancer biomarkers. Identification of biomarkers is usually performed through immunohistochemical staining of cancer sections on glass slides. However, combination of multiple biomarkers from a wide variety of immunohistochemically stained slides is a tedious process in traditional histopathology due to the switching of glass slides and re-identification of regions of interest by pathologists. Digital pathology now allows us to apply image registration algorithms to digitized whole-slides to align the differing immunohistochemical stains automatically. However, registration algorithms need to be robust to changes in color due to differing stains and severe changes in tissue content between slides. In this work we developed a robust registration methodology to allow for fast coarse alignment of multiple immunohistochemical stains to the base hematyoxylin and eosin stained image. We applied HSD color model conversion to obtain a less stain color dependent representation of the whole-slide images. Subsequently, optical density thresholding and connected component analysis were used to identify the relevant regions for registration. Template matching using normalized mutual information was applied to provide initial translation and rotation parameters, after which a cost function-driven affine registration was performed. The algorithm was validated using 40 slides from 10 prostate cancer patients, with landmark registration error as a metric. Median landmark registration error was around 180 microns, which indicates performance is adequate for practical application. None of the registrations failed, indicating the robustness of the algorithm.

News from the Biological Stain Commission no. 12

DEFF Research Database (Denmark)

Lyon, H O

2012-01-01

In this 12(th) issue of News from the Biological Stain Commission (BSC) under the heading of Regulatory affairs, the Biological Stain Commission's International Affairs Committee presents information from the meetings of ISO/TC 212/WG 1 Quality and competence in the medical laboratory and ISO....../TC 212/WG 3 In vitro diagnostic products both held on 2 - 3 June 2010, plus information on the second plenary meeting of ISO/TC 212 Clinical laboratory testing and in vitro diagnostic test systems held on 4 June 2010. All meetings took place in Seoul, Republic of Korea. Finally, information is provided...

[Comparison of four different staining methods for ear cytology of dogs with otitis externa].

Science.gov (United States)

Bouassiba, C; Osthold, W; Mueller, R S

2013-01-01

Cytological examination is crucial for the diagnosis and classification of canine otitis externa. Staining should reveal micro-organisms as perpetuating factors of otitis externa. The aim of the study was to compare four different staining methods (Diff-Quik®, Diff-Quik® after dipping in acetone, Gram Quick stain® and a commercial rapid stain for otitis externa) for ear cytology of dogs with otitis externa and to investigate the agreement of cytology and culture. In a study evaluating dogs with otitis externa, five ear swabs (one for culture and four for cytology) were taken from the horizontal part of the external auditory canal of 224 affected ears and compared semi-quantitatively. Diff-Quik® with and without prior dipping in acetone as well as the Gram Quick stain® displayed a high degree of agreement in the detection of micro-organisms (cocci p = 0.2366; rods p = 0.4832; yeasts p = 0.1574), while the commercial otitis rapid stain revealed significantly less micro-organisms (p stains corresponded to the culture results by >  70%; the agreement was lower with the commercial otitis rapid stain. The quickest and easiest method was staining with Diff-Quik®. Diff-Quik® with or without prior dipping in acetone and the Gram Quick stain® had a high agreement in the detection of microorganisms and can thus be considered nearly equivalent for the diagnosis of otitis externa infectiosa. The commercial otitis rapid stain is less reliable. Based on this study Diff-Quik® can be recommended for the routine cytology of ear swabs. Additionally, a culture may be indicated and must be interpreted in the context of the cytology.

[Improvement of Phi bodies stain and its clinical significance].

Science.gov (United States)

Gong, Xu-Bo; Lu, Xing-Guo; Yan, Li-Juan; Xiao, Xi-Bin; Wu, Dong; Xu, Gen-Bo; Zhang, Xiao-Hong; Zhao, Xiao-Ying

2009-02-01

The aim of this study was to improve the dyeing method of hydroperoxidase (HPO), to analyze the morphologic features of Phi bodies and to evaluate the clinical application of this method. 128 bone marrow or peripheral blood smears from patients with myeloid and lymphoid malignancies were stained by improved HPO staining. The Phi bodies were observed with detection rate of Phi bodies in different leukemias. 69 acute myeloid leukemia (AML) specimens were chosen randomly, the positive rate and the number of Phi bodies between the improved HPO and POX stain based on the same substrate of 3, 3'diaminobenzidine were compared. The results showed that the shape of bundle-like Phi bodies was variable, long or short. while the nubbly Phi bodies often presented oval and smooth. Club-like Phi bodies were found in M(3). The detection rates of bundle-like Phi bodies in AML M(1)-M(5) were 42.9% (6/14), 83.3% (15/18), 92.0% (23/25), 52.3% (11/21), 33.3% (5/15) respectively, and those of nubbly Phi bodies were 28.6% (4/14), 66.7% (12/18), 11.1% (3/25), 33.3% (7/21), 20.0% (3/15) respectively. The detection rate of bundle-like Phi bodies in M(3) was significantly higher than that in (M(1) + M(2)) or (M(4) + M(5)) groups. The detection rate of nubbly Phi bodies in (M(1) + M(2)) group was higher than that in M(3) group. In conclusion, after improvement of staining method, the HPO stain becomes simple, the detection rate of Phi bodies is higher than that by the previous method, the positive granules are more obvious, and the results become stable. This improved method plays an important role in differentiating AML from ALL, subtyping AML, and evaluating the therapeutic results.

Systematic investigation of drip stains on apparel fabrics: The effects of prior-laundering, fibre content and fabric structure on final stain appearance.

Science.gov (United States)

de Castro, Therese C; Taylor, Michael C; Kieser, Jules A; Carr, Debra J; Duncan, W

2015-05-01

Bloodstain pattern analysis is the investigation of blood deposited at crime scenes and the interpretation of that pattern. The surface that the blood gets deposited onto could distort the appearance of the bloodstain. The interaction of blood and apparel fabrics is in its infancy, but the interaction of liquids and apparel fabrics has been well documented and investigated in the field of textile science (e.g. the processes of wetting and wicking of fluids on fibres, yarns and fabrics). A systematic study on the final appearance of drip stains on torso apparel fabrics (100% cotton plain woven, 100% polyester plain woven, blend of polyester and cotton plain woven and 100% cotton single jersey knit) that had been laundered for six, 26 and 52 cycles prior to testing was investigated in the paper. The relationship between drop velocity (1.66±0.50m/s, 4.07±0.03m/s, 5.34±0.18m/s) and the stain characteristics (parent stain area, axes 1 and 2 and number of satellite stains) for each fabric was examined using analysis of variance. The experimental design and effect of storing blood were investigated on a reference sample, which indicated that the day (up to five days) at which the drops were generated did not affect the bloodstain. The effect of prior-laundering (six, 26 and 52 laundering cycles), fibre content (cotton vs. polyester vs. blend) and fabric structure (plain woven vs. single jersey knit) on the final appearance of the bloodstain were investigated. Distortion in the bloodstains produced on non-laundered fabrics indicated the importance of laundering fabrics to remove finishing treatments before conducting bloodstain experiments. For laundered fabrics, both the cotton fabrics and the blend had a circular to oval stain appearance, while the polyester fabric had a circular appearance with evidence of spread along the warp and weft yarns, which resulted in square-like stains at the lowest drop velocity. A significant (pfibre content (pfibres/yarns, while for the

Calcareous nannofossils and sedimentary facies in the Upper Cretaceous Bozeş Formation (Southern Apuseni Mountains, Romania

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Ramona Balc

2012-02-01

Full Text Available The lithology, sedimentology and biostratigraphy of the Bozes Formation, which crop out in the SE Metaliferi Mountains (Apuseni Mts. have been investigated in order to establish the age of the deposits and the depositional environment. The sedimentary structures and facies are interpreted as indicating a deep-water depositional environment, representing part of a submarine fan lobe. Three facies assemblages have been identified and described. Calcareous nannofossils were used to determine the age of the investigated deposits. The presence of Lucianorhabdus cayeuxii and Calculites obscurus indicates the CC17 biozone, while UC13 Zone is pointed out by the continuous occurrence of Arkhangelskiella cymbiformis and the absence of Broinsonia parca parca. Thus, the age of the studied deposits is Late Santonian -?Early Campanian.

A robust, efficient and flexible method for staining myelinated axons in blocks of brain tissue.

Science.gov (United States)

Wahlsten, Douglas; Colbourne, Frederick; Pleus, Richard

2003-03-15

Previous studies have demonstrated the utility of the gold chloride method for en bloc staining of a bisected brain in mice and rats. The present study explores several variations in the method, assesses its reliability, and extends the limits of its application. We conclude that the method is very efficient, highly robust, sufficiently accurate for most purposes, and adaptable to many morphometric measures. We obtained acceptable staining of commissures in every brain, despite a wide variety of fixation methods. One-half could be stained 24 h after the brain was extracted and the other half could be stained months later. When staining failed because of an exhausted solution, the brain could be stained successfully in fresh solution. Relatively small changes were found in the sizes of commissures several weeks after initial fixation or staining. A half brain stained to reveal the mid-sagittal section could then be sectioned coronally and stained again in either gold chloride for myelin or cresyl violet for Nissl substance. Uncertainty, arising from pixelation of digitized images was far less than errors arising from human judgments about the histological limits of major commissures. Useful data for morphometric analysis were obtained by scanning the surface of a gold chloride stained block of brain with an inexpensive flatbed scanner.

Productivity response of calcareous nannoplankton to Eocene Thermal Maximum 2 (ETM2

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M. Dedert

2012-05-01

Full Text Available The Early Eocene Thermal Maximum 2 (ETM2 at ~53.7 Ma is one of multiple hyperthermal events that followed the Paleocene-Eocene Thermal Maximum (PETM, ~56 Ma. The negative carbon excursion and deep ocean carbonate dissolution which occurred during the event imply that a substantial amount (10³ Gt of carbon (C was added to the ocean-atmosphere system, consequently increasing atmospheric CO₂(pCO₂. This makes the event relevant to the current scenario of anthropogenic CO₂ additions and global change. Resulting changes in ocean stratification and pH, as well as changes in exogenic cycles which supply nutrients to the ocean, may have affected the productivity of marine phytoplankton, especially calcifying phytoplankton. Changes in productivity, in turn, may affect the rate of sequestration of excess CO₂ in the deep ocean and sediments. In order to reconstruct the productivity response by calcareous nannoplankton to ETM2 in the South Atlantic (Site 1265 and North Pacific (Site 1209, we employ the coccolith Sr/Ca productivity proxy with analysis of well-preserved picked monogeneric populations by ion probe supplemented by analysis of various size fractions of nannofossil sediments by ICP-AES. The former technique of measuring Sr/Ca in selected nannofossil populations using the ion probe circumvents possible contamination with secondary calcite. Avoiding such contamination is important for an accurate interpretation of the nannoplankton productivity record, since diagenetic processes can bias the productivity signal, as we demonstrate for Sr/Ca measurements in the fine (<20 μm and other size fractions obtained from bulk sediments from Site 1265. At this site, the paleoproductivity signal as reconstructed from the Sr/Ca appears to be governed by cyclic changes, possibly orbital forcing, resulting in a 20–30% variability in Sr/Ca in dominant genera as obtained by ion probe. The ~13 to 21

Optimal iodine staining of cardiac tissue for X-ray computed tomography.

Science.gov (United States)

Butters, Timothy D; Castro, Simon J; Lowe, Tristan; Zhang, Yanmin; Lei, Ming; Withers, Philip J; Zhang, Henggui

2014-01-01

X-ray computed tomography (XCT) has been shown to be an effective imaging technique for a variety of materials. Due to the relatively low differential attenuation of X-rays in biological tissue, a high density contrast agent is often required to obtain optimal contrast. The contrast agent, iodine potassium iodide ([Formula: see text]), has been used in several biological studies to augment the use of XCT scanning. Recently I2KI was used in XCT scans of animal hearts to study cardiac structure and to generate 3D anatomical computer models. However, to date there has been no thorough study into the optimal use of I2KI as a contrast agent in cardiac muscle with respect to the staining times required, which has been shown to impact significantly upon the quality of results. In this study we address this issue by systematically scanning samples at various stages of the staining process. To achieve this, mouse hearts were stained for up to 58 hours and scanned at regular intervals of 6-7 hours throughout this process. Optimal staining was found to depend upon the thickness of the tissue; a simple empirical exponential relationship was derived to allow calculation of the required staining time for cardiac samples of an arbitrary size.

Investigation Of The Color Changing Properties Of Wood Stain Derived From Pinar Leaves

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Abdi Atılgan

2011-11-01

Full Text Available This study was designed to develop an environmentally friendly wood stain derived pinar (Quercus aucheri leaves and determine the color stability of this stain when exposed to UV light irradiation. Wood stains derived from pinar leaves were prepared from aqueous solution with %3 iron (FeSO4.7H2O , % 5 alum ((KAl(SO42.12H2O, and % 10 vinegar mordant mixtures. Scots pine (Pinus sylvestris L., Turkish oriental beech (Fagus orientalis Lipsky and oak (Quercus petraea L. wood specimens were used as staining substrates. After treatment with the stain, the wood panels were exposed to UV light irradiation for periods of 100, 200, and 300 hours and determinated the total color changes was according to ISO 2470 standards. Results showed that wood stain derived from pinar extract provided some color stability after UV irradiation. According to results, Scots pine specimens treated with the pinar extract + iron mixture provided the smallest total color changes. Meanwhile the highest total color change provided on the Scots pine treated with pinar extract+alum mixture.

MEGARA Optics: stain removal in PBM2Y prisms

International Nuclear Information System (INIS)

Aguirre-Aguirre, D; Izazaga-Pérez, R; Carrasco, E; Villalobos-Mendoza, B; De Paz, A Gil; Gallego, J; Iglesias, J

2017-01-01

MEGARA is the new integral-field and multi-object optical spectrograph for the GTC. For medium and high resolution, the dispersive elements are volume phase holographic gratings, sandwiched between two flat windows and two prisms of high optical precision. The prisms are made of Ohara PBM2Y optical glass. After the prisms polishing process, some stains appeared on the surfaces. For this, in this work is shown the comparative study of five different products (muriatic acid, paint remover, sodium hydroxide, aqua regia and rare earth liquid polish) used for trying to eliminate the stains of the HR MEGARA prisms. It was found that by polishing with the hands the affected area, and using a towel like a kind of pad, and polish during five minutes using rare earth, the stains disappear completely affecting only a 5% the rms of the surface quality. Not so the use of the other products that did not show any apparent result. (paper)

Neo-Timm staining in the thalamus of chronically epileptic rats

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Hamani C.

2005-01-01

Full Text Available The thalamus is an important modulator of seizures and is severely affected in cholinergic models of epilepsy. In the present study, chronically epileptic rats had their brains processed for neo-Timm and acetylcholinesterase two months after the induction of status epilepticus with pilocarpine. Both controls and pilocarpine-treated animals presented neo-Timm staining in the anterodorsal nucleus, laterodorsal nucleus, reticular nucleus, most intralaminar nuclei, nucleus reuniens, and rhomboid nucleus of the thalamus, as well as in the zona incerta. The intensity of neo-Timm staining was similar in control and pilocarpine-treated rats, except for the nucleus reuniens and the rhomboid nucleus, which had a lower intensity of staining in the epileptic group. In animal models of temporal lobe epilepsy, zinc seems to modulate glutamate release and to decrease seizure activity. In this context, a reduction of neo-Timm-stained terminals in the midline thalamus could ultimately result in an increased excitatory activity, not only within its related nuclei, but also in anatomical structures that receive their efferent connections. This might contribute to the pathological substrate observed in chronic pilocarpine-treated epileptic animals.

An improved silver staining procedure for schizodeme analysis in polyacrylamide gradient gels

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Antonio M. Gonçalves

1990-03-01

Full Text Available A simple protocol is described for the silver staining of polyacrylamide gradient gels used for the separation of restriction fragments of kinetoplast DNA [schizodeme analysis of trypanosomatids (Morel et al., 1980]. The method overcomes the problems of non-uniform staining and strong background color which are frequently encountered when conventional protocols for silver staining of linear gels. The method described has proven to be of general applicability for DNA, RNA and protein separations in gradient gels.

What do results of common sequential fractionation and single-step extractions tell us about P binding with Fe and Al compounds in non-calcareous sediments?

Czech Academy of Sciences Publication Activity Database

Jan, Jiří; Borovec, Jakub; Kopáček, Jiří; Hejzlar, Josef

2013-01-01

Roč. 47, č. 2 (2013), s. 547-557 ISSN 0043-1354 R&D Projects: GA ČR(CZ) GA206/09/1764; GA MZe(CZ) QH81012; GA MZe(CZ) QI102A265 Institutional support: RVO:60077344 Keywords : sequential fractionation * ascorbate and oxalate extration * non-calcareous sediments Subject RIV: DA - Hydrology ; Limnology Impact factor: 5.323, year: 2013

A combined Bodian-Nissl stain for improved network analysis in neuronal cell culture.

Science.gov (United States)

Hightower, M; Gross, G W

1985-11-01

Bodian and Nissl procedures were combined to stain dissociated mouse spinal cord cells cultured on coverslips. The Bodian technique stains fine neuronal processes in great detail as well as an intracellular fibrillar network concentrated around the nucleus and in proximal neurites. The Nissl stain clearly delimits neuronal cytoplasm in somata and in large dendrites. A combination of these techniques allows the simultaneous depiction of neuronal perikarya and all afferent and efferent processes. Costaining with little background staining by either procedure suggests high specificity for neurons. This procedure could be exploited for routine network analysis of cultured neurons.

Immunohistochemical positive stained p53 protein in bladder transitional cell carcinoma

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Halimi Monireh

2009-04-01

Full Text Available Background: Molecular genetics and immunopathologic analysis of bladder cancer have shown some abnormalities in a number of genes and proteins that have been implicated in the development and progression of such tumors, mainly in the p53 pathway. Aims: To investigate the rate of positively stained p53 protein in patients with urothelial papillary carcinoma of the bladder (UCB by immunohistochemistry and its relationship with tumor grade, gender and age of the patients. Settings and Design: During the present cross-sectional study, 100 paraffin-embedded specimens of UCB, which were provided from biopsies of the bladder by transurethral access, were immunohistochemically stained and studied for p53 protein from May 2006 to May 2007 in our referral center pathology laboratory. Materials and Methods: First, 4 µm slices of paraffin sections were provided and then stained by the avidin-biotin peroxidase method. The rate of positively stained p53 protein (defined as positive nuclear staining in over 10% of the cells was assessed. This rate was also estimated and compared between grades, genders and age-related groups (< 70 years, ≥70 years. Statistical Analysis: The χ2 , Fisher′s exact test and Mann-Whitney U test were used for comparing. Results: The overall rate of positively stained specimens was 11% for nuclear p53 protein. This rate was significantly higher in females (10/29 vs. 1/71; P < 0.001; odds ratio [OR]: 0.23; 95% confidence interval [CI]: 4.43-306.08, patients with 70 or older than 70 years (8/42 vs. 3/58; P = 0.04; OR: 0.55; 95% CI: 1.07-17.39 and in high-grade tumors (10/58 vs. 1/42; P = 0.02; OR: 0.59; 95% CI: 0.01-0.95. Conclusions: The rate of positively stained p53 protein for UCB was lower in our population. This rate was also higher in females, patients with 70 or older than 70 years and high grade of UCB.

Effectiveness of clean-up procedures on stain susceptibility of different orthodontic adhesives

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Swati Pundlik Mane

2014-01-01

Conclusion: Chemical-cure adhesive showed higher stain susceptibility than light-cure adhesive in all clean-up procedures. Both adhesives would show less stain susceptibility with polishing step with rubber cup and pumice.

Staining of proteins in gels with Coomassie G-250 without organic solvent and acetic acid.

Science.gov (United States)

Lawrence, Ann-Marie; Besir, H Uuml Seyin

2009-08-14

In classical protein staining protocols using Coomassie Brilliant Blue (CBB), solutions with high contents of toxic and flammable organic solvents (Methanol, Ethanol or 2-Propanol) and acetic acid are used for fixation, staining and destaining of proteins in a gel after SDS-PAGE. To speed up the procedure, heating the staining solution in the microwave oven for a short time is frequently used. This usually results in evaporation of toxic or hazardous Methanol, Ethanol or 2-Propanol and a strong smell of acetic acid in the lab which should be avoided due to safety considerations. In a protocol originally published in two patent applications by E.M. Wondrak (US2001046709 (A1), US6319720 (B1)), an alternative composition of the staining solution is described in which no organic solvent or acid is used. The CBB is dissolved in bidistilled water (60-80 mg of CBB G-250 per liter) and 35 mM HCl is added as the only other compound in the staining solution. The CBB staining of the gel is done after SDS-PAGE and thorough washing of the gel in bidistilled water. By heating the gel during the washing and staining steps, the process can be finished faster and no toxic or hazardous compounds are evaporating. The staining of proteins occurs already within 1 minute after heating the gel in staining solution and is fully developed after 15-30 min with a slightly blue background that is destained completely by prolonged washing of the stained gel in bidistilled water, without affecting the stained protein bands.

Chlamydia species in free-living Cattle Egret (Bubulcus ibis and Hoopoe (Upupa epops in Egypt

Directory of Open Access Journals (Sweden)

Jakeen K. El-Jakee

2014-06-01

Full Text Available Little information is available on the presence of chlamydia infection in wildlife. This study was conducted to assess the occurrence of chlamydiae in asymptomatic birds from two species of wild birds (Cattle Egret and Hoopoe in Egypt. In the present study Chlamydiaceae was analyzed using Giemsa stain, Giménez stain, fluorescent antibody test (FAT and PCR. The results of these techniques were compared with CFT for detecting Chlamydia psittaci antibodies among the examined birds. The results reveal that 96.4%, 81.8%, 89.1%, 80.0% and 58.2% of the examined samples were positive for chlamydiosis using PCR, Giemsa stain, Giménez stain, FA, and CFT respectively among Hoopoe. The percentages were 90.6%, 77.4%, 83.0%, 75.5% and 66.0% respectively for the previous tests among Cattle Egret birds. The results suggest that Cattle Egret and Hoopoe may be reservoir of Chlamydiaceae species and thus shed the organisms in their excreta. The shedding of chlamydiae by free living birds in Egypt may expose humans that come in contact with these birds to zoonotic risks.

Identification of Nutrient Deficiencies at Calcareous Soils for Maize

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Dedi Nursyamsi

2010-09-01

Full Text Available A pot experiment was conducted to identify nutrient deficiencies at calcareous soils for maize (Zea mays, L. in green house of Indonesian Soil Research Institute using top soil (0-20 cm samples taken from Bogor (Typic Hapludalfs and Blora (Typic Haplustalfs. The experiment used Randomized Completely Block Design, minus one test with 12 treatments and three replications, as well as maize of P21 variety as plant indicator. The results showed that use of N, P, K, Zn, Cu, Fe, and Mn fertilizers increased soil macro nutrients, i.e.: soil total-N, Olsen-P, HCl-P, and HCl-K, as well as soil micro nutrients, i.e.: soil DTPA-Zn, Cu, Fe, and Mn at both tested soils. Use of maize straw compost increased soil organic-C, total-N, HCl-K, and exchangeable Ca at Typic Hapludalfs and increased only soil organic-C and total-N at Typic Haplustalfs. Use of animal manure compost increased soil organic-C, exchangeable Ca and Mg, and CEC. Use of N, P, K, S, Zn, Cu, Fe, and Mn fertilizers increased each plant nutrients uptake at the soils. Use of both organic matters increased plant N, P, K, and Fe uptake at Typic Hapludalfs as well as increased only plant N, P, and K uptake at Typic Haplustalfs. Identification result showed that maize growth suffered from N, P, and K deficiencies at Typic Hapludalfs as well as N and P deficiencies at Typic Haplustalfs. Beside the nutrients, soil organic matter was also found out as limiting factor for maize growth in the soils.

Efficacy of baking soda-containing chewing gum in removing natural tooth stain.

Science.gov (United States)

Mankodi, S M; Conforti, N; Berkowitz, H

2001-07-01

A 14-week, double-blind, randomized clinical trial was conducted with 126 healthy volunteers to compare the efficacy of twice-daily use of 3 baking soda-containing chewing gums in removing natural tooth stain when used in conjunction with a program of regular oral hygiene. All 3 chewing gums significantly reduced extrinsic stain (P Baking Soda Gum (AHDC) reduced dental stain by 70.8%, compared to reductions of 71.9% and 65.3%, after use of 2 experimental gum formulations. Whitened appearance improved by 1.73 shade tabs using AHDC gum, and up to 2.49 shade tabs with the experimental formulations. These results suggest that the use of baking soda-containing gum after meals, in conjunction with good oral hygiene, can improve both extrinsic dental staining and the whitened appearance of teeth.

Evaluation Method of Accumulated Cooking Oil Stains in Room

OpenAIRE

五十嵐, 由利子; 中村, 和吉; 萬羽, 郁子; Igarashi, Yuriko; Nakamura, Kazuyoshi; Banba, Ikuko

2005-01-01

The diffusion of the oil mist while cooking affects the entire room, leaving stains on the ceiling and walls. The validity of measuring the color difference of stains was examined by installing teflon plates in the kitchen and the adjacent space with a view to assessing the oil diffusion. Four houses were designated for the examination. In each house, four teflon plates (20×40mm) were installed on the ceiling and walls of the kitchen and the space adjacent to it. Then, one plate was removed a...

Improving Gram stain proficiency in hospital and satellite laboratories that do not have microbiology.

Science.gov (United States)

Guarner, Jeannette; Street, Cassandra; Matlock, Margaret; Cole, Lisa; Brierre, Francoise

2017-03-01

Consolidation of laboratories has left many hospitals and satellite laboratories with minimal microbiologic testing. In many hospitals and satellite laboratories, Gram stains on primary specimens are still performed despite difficultly in maintaining proficiency. To maintain Gram stain proficiency at a community 450-bed hospital with an active emergency room we designed bimonthly challenges that require reporting Gram staining and morphology of different organisms. The challenges consist of five specimens prepared by the reference microbiology laboratory from cultures and primary specimens. Twenty to 23 medical laboratory scientists participate reading the challenges. Results from the challenges are discussed with each medical laboratory scientists. In addition, printed images from the challenges are presented at huddle to add microbiology knowledge. On the first three challenges, Gram staining was read correctly in 71%-77% of the time while morphology 53%-66%. In the last six challenges correct answers for Gram stain were 77%-99% while morphology 73%-96%. We observed statistically significant improvement when reading Gram stains by providing frequent challenges to medical laboratory scientists. The clinical importance of Gram stain results is emphasized during huddle presentations increasing knowledge and motivation to perform the test for patients.

Amazonian açai and food dyes for staining arbuscular- micorrhizal fungi

Directory of Open Access Journals (Sweden)

Aline Lourdes Martins Silva

2015-12-01

Full Text Available Arbuscular mycorrhizae microscopy requires differential staining of typical structures. Dyes employed, such as trypan blue, pose risks to health and environment. Alternative dyes such as pen ink and aniline have variable coloring efficiency. In this work, Brachiaria decumbens roots, discolored with caustic soda (NaOH, were stained with açai, annatto, saffron, trypan blue and pen inks. There were significant differences among dyes regarding stained mycorrhizal structures and pictures quality. Acai was considered the best alternative dye, with similar results to trypan blue.

Study of stained glass window using PIXE-PIGE

International Nuclear Information System (INIS)

Weber, G.; Bemden, Y. Vanden; Pirotte, M.; Gilbert, B.

2005-01-01

We had the opportunity to study a large panel (100x80cm) containing more than 40 stained glass pieces. Among them several come from restorations having taken place at different periods. The study of this rather complex arrangement has been processed by stages:- the elemental composition of 16 zones were determined: several differences were identified and among them the Na/K ratio which allowed to set three groups of glass type; - the measurement of the Na concentrations by the two techniques give information in bulk (PIGE) and at the near surface (PIXE); the values defined by the (C PIGE -C PIXE) )/C PIGE plotted in function of the historical estimation of the age of the stained glass pieces (original and restored) indicate a real correlation between the two variables; - the red-colored pieces were specially investigated in order to determine which coloration technique was employed (bulk coloration, superficial staining, multilayered flashing, etc.); - the corrosion was investigated by scanning two different worsened zones with a 0.5mm diameter beam spot. This study shows the possibilities of the PIGE-PIXE association, but also points out some weaknesses, which have to be solved by other techniques; unfortunately, in that case, the non-destructive aspect could be lost

A transgressive Santonian-Campanian boundary sequence revisited - High resolution planktonic and benthic foraminifera stratigraphy of the Schattau section, Northern Calcareous Alps.

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Wolfgring, Erik; Wagreich, Michael; Summesberger, Herbert; Kroh, Andreas

2016-04-01

The Schattau section is part of the Austrian Gosau Group, Northern Calcareous Alps. We record a Santonian to early Campanian transgressive sequence. Previous investigations already provide a biostratigraphic framework; a multidisciplinary study to reveal the local stratigraphy and palaeoenvironmental properties: Planktonic foraminifera, calcareous nannoplankton, ammonite, echinoid and crinoid biostratigraphy data suggest a Santonian to earliest Campanian age for this section (see Wagreich et al., 2009). This work aims at a high resolution assessment of foraminiferal assemblages recorded from a time interval that has undergone significant palaeoenvironmental changes. The Santonian Hochmoos Formation, with the Sandkalkbank Member representing it's topmost subunit, is overlain by the Santonian to Campanian Bibereck Formation. While The Hochmoos Formation records a shallowing succession that finds the Sandkalkbank Member (representing very shallow conditions, sometimes sub aerial exposure) at its top. The overlying Bibereck Formation records a distinct deepening trend displaying increasingly marine, neritic to outer neritic conditions. The stratigraphically older subunits of the Schattau sections are characterised by abundant larger benthic foraminifera (Nummofallotia cretacea), miliolid foraminifera (Quinqueloculina spp, Spiroloculina fassistomata) as well as rotaliid foraminifera (Hoeglundia spp., Gavellina spp.). The Sandkalkbank member marks the end of the shallow water sequence recorded from foraminifera assemblages at the Schattau section. Up section communities are characterised by increasing share of planktonic foraminifera. Biostratigraphic marker fossils like Dicarinella asymetrica and Sigalia sp. (decoratissima?) were identified and indicate a Santonian age for the Bibereck Formation. The appearance of Globotruncanita elevata and disappearance of D. asymetrica and Sigalia sp. Suggests an early Campanian age for the topmost part of the Schattau section

Pleistocene to Miocene Calcareous Nannofossil Biostratigraphy from IODP Expedition 334 Hole U1381A and Expedition 352 Hole U1439A

Science.gov (United States)

Power, M.; Scientists, I. E.; Avery, A. J.

2015-12-01

Samples for this study were collected from drill cores taken during the Integrated Ocean Drilling Program (IODP) Expeditions 334 and 352 at Sites U1381 and U1439, respectively. Both of these expeditions were focused around subduction zones and, therefore, had priorities to determine time frames for the initiation of subduction. There are two main objectives for this study, the first being to age-date Pleistocene to Miocene sediments from the western offshore continental margin of Costa Rica (IODP Expedition 334) via calcareous nannofossils. The second objective is to age-date the Miocene sediments from the fore-arc of the Izu-Bonin-Mariana system, east of Japan (IODP Expedition 352), using calcareous nannofossils. Shore-based analysis allows for high-resolution study to determine exact biostratigraphic zonations. These zonations reflect specific time frames based on the occurrence or non-occurrence of certain nannofossil species. Once these zonations are determined, scientists can use the data to identify the initiation of seismic processes that often occur in these regions. Calcareous nannofossil biostratigraphy has now provided zonations for the samples taken from IODP Expedition 334 cores. Samples from core 6R are assigned to the Pleistocene nannofossil Zone NN19 due to the presence ofPseudoemiliania lacunosa and the absence of Emiliania huxleyi. Using the zonal scheme by de Kaenel (1999), this can further be broken down into Event 18 due to the presence of Gephyrocapsa oceanica larger than 4 μm but less than 5 μm, the presence of Calcidiscus macintyrei smaller than 11 μm, and the absence ofGephyrocapsa caribbeanica larger than 4 μm. De Kaenel (1999) has assigned this event datum an age of 1.718 Ma using orbital time scales and oxygen isotope data. Below these samples, an extensive hiatus ranges from the Pleistocene to the early Miocene. Samples from cores 7R through 10R are assigned to nannofossil zone NN5; however, it is impossible to constrain the top of

Gram stains: a resource for retrospective analysis of bacterial pathogens in clinical studies.

Science.gov (United States)

Srinivasan, Usha; Ponnaluri, Sreelatha; Villareal, Lisa; Gillespie, Brenda; Wen, Ai; Miles, Arianna; Bucholz, Brigette; Marrs, Carl F; Iyer, Ram K; Misra, Dawn; Foxman, Betsy

2012-01-01

We demonstrate the feasibility of using qPCR on DNA extracted from vaginal Gram stain slides to estimate the presence and relative abundance of specific bacterial pathogens. We first tested Gram stained slides spiked with a mix of 10(8) cfu/ml of Escherichia coli and 10(5) cfu/ml of Lactobacillus acidophilus. Primers were designed for amplification of total and species-specific bacterial DNA based on 16S ribosomal gene regions. Sample DNA was pre-amplified with nearly full length 16S rDNA ribosomal gene fragment, followed by quantitative PCR with genera and species-specific 16S rDNA primers. Pre-amplification PCR increased the bacterial amounts; relative proportions of Escherichia coli and Lactobacillus recovered from spiked slides remained unchanged. We applied this method to forty two archived Gram stained slides available from a clinical trial of cerclage in pregnant women at high risk of preterm birth. We found a high correlation between Nugent scores based on bacterial morphology of Lactobacillus, Gardenerella and Mobiluncus and amounts of quantitative PCR estimated genus specific DNA (rrn copies) from Gram stained slides. Testing of a convenience sample of eight paired vaginal swabs and Gram stains freshly collected from healthy women found similar qPCR generated estimates of Lactobacillus proportions from Gram stained slides and vaginal swabs. Archived Gram stained slides collected from large scale epidemiologic and clinical studies represent a valuable, untapped resource for research on the composition of bacterial communities that colonize human mucosal surfaces.

Indocyanine green staining facilitates detection of bleb leakage during trabeculectomy.

Science.gov (United States)

Okazaki, Teruhiko; Kiuchi, Takahiro; Kawana, Keisuke; Oshika, Tetsuro

2007-03-01

To report a new technique to visualize bleb leakage using indocyanine green (ICG) staining during trabeculectomy. The ICG solution was widely applied over the filtering bleb including the conjunctival wound before completion of trabeculectomy. This procedure was performed in 48 eyes of 44 consecutive patients undergoing trabeculectomy between December 2004 and October 2005. Without staining, bleb leakage was not identified by the direct observation under the operating microscope. ICG staining clearly visualized aqueous leakage from the bleb in 5 eyes (10.4%). The bleb leakage in these eyes was easily repaired with 10-0 nylon sutures, and no eyes, including these 5 cases, showed bleb leakage after surgery. There were no intraoperative and postoperative complications related to ICG application. The application of ICG during trabeculectomy is a simple and useful technique to facilitate detection and repair of the bleb leakage.

Influence of long-term fertilization on the selenium content of calcareous chernozem soil.

Science.gov (United States)

Blagojević, S; Jakovljević, M; Zarković, B

1998-01-01

Available data on the selenium (Se) content in Yugoslavian soils indicate that the element is present in small amounts (chernozem soil. The experiment of the Maize Research Institute in Belgrade was set up in 1971 and soil samples were examined by chemical analysis after 23 years. The following important conclusions can be drawn based on the analytical data obtained. The total content of Se in the investigated experimental variants in calcareous chernozem soil ranges from 166 to 593 microg/kg. All the variants had a higher content of Se than soil samples taken before the experiment was set up. Comparison with the control (variant without fertilizers) indicated that the Se content increased in the experimental variants where farmyard manure had been applied. This effect was noticed to a depth of 80 cm. Application of farmyard manure should be considered as a means of increasing the levels of Se in Se-deficient soil. Correlation coefficients between total Se content in the soil and some important agrochemical properties of the investigated soils are presented in this paper.

Mercury localization in mouse kidney over time: autoradiography versus silver staining

International Nuclear Information System (INIS)

Rodier, P.M.; Kates, B.; Simons, R.

1988-01-01

Several methods of silver staining have been employed to localize mercury in tissue, under the assumption that the techniques represent total Hg, but recent reports have suggested that these stains are specific for a limited fraction of the Hg present in some samples. Magos et al. hypothesized that the stains actually vary with inorganic mercury content. The purpose of the present study was to compare localization by radiolabeling to localization by one silver stain, the photoemulsion histochemical technique, in tissues prepared to contain a range of levels of total Hg and a range of levels of inorganic Hg. Mice dosed with 8 mg Hg/kg as MeHg were killed 24 hr, 1 week, or 2 weeks after exposure, to allow a decrease in total Hg and an increase in the proportion of demethylated Hg over time. Mice dosed with 4 mg Hg/kg as HgCl 2 provided samples in which all the Hg present was in the inorganic form. Atomic absorption of kidneys of mice dosed with MeHg showed that total Hg fell from 55 micrograms/g to 39 to 25 over 2 weeks, while the inorganic fraction climbed from about 2 to 27 to 35%. Grain counts from autoradiographs of 203 Hg-labeled sections correlated with total Hg content at +0.88, but silver staining was correlated with inorganic Hg content, appearing only at late termination times in MeHg-exposed animals, but soon after dosing in mice exposed to inorganic Hg. The photoemulsion histochemical technique revealed a substance strictly localized in the proximal tubules, while autoradiographs and grain counts showed total Hg to be present throughout the kidney tissue. These results support the contention that silver stains are selective for inorganic Hg

Embedding, serial sectioning and staining of zebrafish embryos using JB-4 resin.

Science.gov (United States)

Sullivan-Brown, Jessica; Bisher, Margaret E; Burdine, Rebecca D

2011-01-01

Histological techniques are critical for observing tissue and cellular morphology. In this paper, we outline our protocol for embedding, serial sectioning, staining and visualizing zebrafish embryos embedded in JB-4 plastic resin-a glycol methacrylate-based medium that results in excellent preservation of tissue morphology. In addition, we describe our procedures for staining plastic sections with toluidine blue or hematoxylin and eosin, and show how to couple these stains with whole-mount RNA in situ hybridization. We also describe how to maintain and visualize immunofluorescence and EGFP signals in JB-4 resin. The protocol we outline-from embryo preparation, embedding, sectioning and staining to visualization-can be accomplished in 3 d. Overall, we reinforce that plastic embedding can provide higher resolution of cellular details and is a valuable tool for cellular and morphological studies in zebrafish.

Optimal staining methods for delineation of cortical areas and neuron counts in human brains.

Science.gov (United States)

Uylings, H B; Zilles, K; Rajkowska, G

1999-04-01

For cytoarchitectonic delineation of cortical areas in human brain, the Gallyas staining for somata with its sharp contrast between cell bodies and neuropil is preferable to the classical Nissl staining, the more so when an image analysis system is used. This Gallyas staining, however, does not appear to be appropriate for counting neuron numbers in pertinent brain areas, due to the lack of distinct cytological features between small neurons and glial cells. For cell counting Nissl is preferable. In an optimal design for cell counting at least both the Gallyas and the Nissl staining must be applied, the former staining for cytoarchitectural delineaton of cortical areas and the latter for counting the number of neurons in the pertinent cortical areas. Copyright 1999 Academic Press.

The utility of the hematoxylin and eosin staining in patients with suspected Hirschsprung disease.

Science.gov (United States)

Setiadi, Josephine Amanda; Dwihantoro, Andi; Iskandar, Kristy; Heriyanto, Didik Setyo; Gunadi

2017-06-19

While immunohistochemistry (IHC) methods have been widely conducted for the diagnosis of Hirschsprung disease (HSCR) in developed countries, there are very few studies on their use in developing countries where hematoxylin and eosin (HE) staining is a key element of the diagnosis of HSCR. We aimed to determine the accuracy of HE staining in the diagnosis of HSCR using S100 IHC as the reference standard in Indonesia. All histopathology performed for the suspicion of HSCR patients from January 2013 to August 2015 in Dr. Sardjito Hospital, Yogyakarta, Indonesia, were retrospectively reviewed. Our study included 23 HSCR patients: 9 males and 14 females. The HE staining revealed 14 negative (absence of ganglion cells) cases (61%) and 9 positive (presence of ganglion cells) cases (39%). In S100 IHC, out of the 9 positive cases by HE staining, 6 (67%) were confirmed for having ganglion cells; and out of the 14 negative cases by HE staining, 12 (86%) were reported negative and 2 (14%) were positive by S100 IHC staining. The sensitivity, specificity, positive predictive value, negative predictive value, and accuracy rates of the HE staining were 80% (95% CI: 0.51-0.95), 75% (95% CI: 0.36-0.96), 85.7% (95% CI: 0.56-0.98), 66.7% (95% CI: 0.31-0.91), and 78.3% (95% CI: 0.58-0.90), respectively. Our study showed that HE staining has relatively moderate accuracy for the diagnosis of HSCR. The use of HE staining is still recommended for the diagnosis of HSCR given the limitation of resource allocation for more expensive IHC technologies in developing countries.

Marine Red Staining of a Pennsylvanian Carbonate Slope: Environmental and Oceanographic Significance

NARCIS (Netherlands)

van der Kooij, B.; Immenhauser, A.M.; Steuber, T; Hagmaier, M.; Bahamonde, J.R.; Samankassou, E.; Merino Tomé, O.

2007-01-01

Red-stained platform facies are a common feature of many carbonate settings throughout the geological record. Although the mechanisms involved in red staining of subaerially exposed or argillaceous, peri-platforin limestones are reasonably well understood, the environmental and oceanographic

Stain-etched porous silicon nanostructures for multicrystalline silicon-based solar cells

Science.gov (United States)

Ben Rabha, M.; Hajji, M.; Belhadj Mohamed, S.; Hajjaji, A.; Gaidi, M.; Ezzaouia, H.; Bessais, B.

2012-02-01

In this paper, we study the optical, optoelectronic and photoluminescence properties of stain-etched porous silicon nanostructures obtained with different etching times. Special attention is given to the use of the stain-etched PS as an antireflection coating as well as for surface passivating capabilities. The surface morphology has been analyzed by scanning electron microscopy. The evolution of the Si-O and Si-H absorption bands was analyzed by Fourier transform infrared spectrometry before and after PS treatment. Results show that stain etching of the silicon surface drops the total reflectivity to about 7% in the 400-1100 nm wavelength range and the minority carrier lifetime enhances to about 48 μs.

Predicting the yield and quality of winter wheat grown on calcareous chernozem in the lower Don Region

Directory of Open Access Journals (Sweden)

Olga Biryukova

2015-07-01

Full Text Available Long-term studies have revealed a system of indicators for predicting the yield of winter wheat grown on a calcareous chernozem. It has been established that the prediction and integrated assessment of the yield and quality of grain should be performed with consideration for the balance of macro- and micronutrients in the grain and the above-ground biomass of plants. It has been shown that the contents of protein and gluten in winter wheat grain are mainly determined by the supply of plants with nitrogen and its balance with Mn, Р, Fe, Zn, and K. Possibility of predicting the contents of macro- and micronutrients in wheat grain from the chemical composition of plants at the shooting stage has been revealed.

One Small Step for the Gram Stain, One Giant Leap for Clinical Microbiology.

Science.gov (United States)

Thomson, Richard B

2016-06-01

The Gram stain is one of the most commonly performed tests in the clinical microbiology laboratory, yet it is poorly controlled and lacks standardization. It was once the best rapid test in microbiology, but it is no longer trusted by many clinicians. The publication by Samuel et al. (J. Clin. Microbiol. 54:1442-1447, 2016, http://dx.doi.org/10.1128/JCM.03066-15) is a start for those who want to evaluate and improve Gram stain performance. In an age of emerging rapid molecular results, is the Gram stain still relevant? How should clinical microbiologists respond to the call to reduce Gram stain error rates? Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Investigation of black soot staining in houses

Energy Technology Data Exchange (ETDEWEB)

Fugler, D. [Canada Mortgage and Housing Corp., Ottawa, ON (Canada)

2000-07-01

Air quality investigators are frequently called upon to determine the origin of streaking, staining or soot marks in both new and old homes. Those marks display common characteristics: black marks along baseboards at interior or exterior walls, behind furniture and at doorways; black smudges on window frames and plastic cabinets; and even shadowing of studs on exterior wall drywall in a few cases. In most instances, carbon soot from a combustion source is the culprit. The combustion sources include furnaces, water heaters, fireplaces, gas dryers, gas ranges, smoking, vehicle exhaust and candle burning. Scepticism about candle soot is prevalent among callers. As a result, a study was initiated in homes where occupants burn candles regularly to investigate soot problems. Samples were collected from five homes, and included stained carpets, filters, and swab samples of black dust or soot. All the houses selected for the study had been built within a three-year period. Some samples of candles commonly burned in those homes were burnt in a laboratory. Air quality audits had been performed in the homes and had revealed other potential pollutant sources. Best practices for cost-effective clean up and control of soot were researched in industry information. The tests conducted in the laboratory found materials consistent with candle soot or residue during microscopic investigations, but no link was established with the stained material obtained from the homes. A few tips for homeowners were included concerning candle burning, and tips for builders were also offered. 1 tab.

Calcareous nannoplankton dating of the Late Quaternary deposits in Greece and the eastern Mediterranean: Case studies from terrestrial and marine sites

Directory of Open Access Journals (Sweden)

Maria V. Triantaphyllou

2015-10-01

Full Text Available The distribution and abundance of Emiliania huxleyi (E. huxleyi assemblages in the marine sediments of the Aravonitsa Plateau, Greece, and from the eastern Mediterranean are used (1 to evaluate the calcareous nannoplankton NN21a and NN21b biozones and the NN21a/NN21b boundary, and (2 to analyze the palaeoenvironmental and palaeoclimatic conditions prevailing in this interval. The sediment succession displays varied E. huxleyi assemblages and these are interpreted as reflecting climatic variability during marine isotope stages MIS 1–8.

Staining of Platyhelminthes by herbal dyes: An eco-friendly technique for the taxonomist

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Niranjan Kumar

2015-11-01

Full Text Available Aim: An environment compatible technique to stain Platyhelminthes, Fasciola gigantica, Gastrothylax crumenifer, Taenia solium, and Moniezia expansa using aqueous and alcoholic extract of sugar beet (Beta vulgaris, China rose (Hibiscus rosasinensis, and red rose (Rosa hybrida were described to minimized the deleterious effects of the synthetic dyes. Materials and Methods: Aqueous/ethanolic extracts of roses were extracted from the flowers while red beet was extracted from the roots. Results: Stained helminthes acquired a comparable level of pigmentation with the distinction of their internal structure in these natural dyes. The flukes (liver and rumen internal structure, oral and ventral/posterior sucker, cirrus sac, gravid uterus, testes, ovary, and vitallaria were appeared pink color in aqueous and alcoholic extract of either China or red rose and yellow to brown color in sugar beet stain. The interior of the proglottid of T. solium and M. expansa took yellow to brown color with good contrast in sugar beet stain and of pink to pink-red in China and red rose stain. Conclusion: The extract of roses (red rose followed by China rose followed by red beet possess the potential to replace the conventional stains in the taxonomic study of Platyhelminthes parasites.

A comparative assessment of commonly employed staining ...

African Journals Online (AJOL)

Following an increase in the number of reports of Cryptosporidium infections and the problems encountered in detecting these organisms in faecal smears, a comparative assessment of a modification of the Sheather's flotation technique and other commonly employed staining procedures proved the modified Sheather's ...

Stain-free histopathology by programmable supercontinuum pulses

DEFF Research Database (Denmark)

Tu, Haohua; Liu, Yuan; Turchinovich, Dmitry

2016-01-01

The preparation, staining, visualization and interpretation of histological images of tissue is well accepted as the gold standard process for the diagnosis of disease. These methods have a long history of development, and are used ubiquitously in pathology, despite being highly time- and labour-...

A novel, modernized Golgi-Cox stain optimized for CLARITY cleared tissue.

Science.gov (United States)

Kassem, Mustafa S; Fok, Sandra Y Y; Smith, Kristie L; Kuligowski, Michael; Balleine, Bernard W

2018-01-15

High resolution neuronal information is extraordinarily useful in understanding the brain's functionality. The development of the Golgi-Cox stain allowed observation of the neuron in its entirety with unrivalled detail. Tissue clearing techniques, e.g., CLARITY and CUBIC, provide the potential to observe entire neuronal circuits intact within tissue and without previous restrictions with regard to section thickness. Here we describe an improved Golgi-Cox stain method, optimised for use with CLARITY and CUBIC that can be used in both fresh and fixed tissue. Using this method, we were able to observe neurons in their entirety within a fraction of the time traditionally taken to clear tissue (48h). We were also able to show for the first-time that Golgi stained tissue is fluorescent when visualized using a multi-photon microscope, allowing us to image synaptic spines with a detail previously unachievable. These novel methods provide cheap and easy to use techniques to investigate the morphology of cellular processes in the brain at a new-found depth, speed, utility and detail, without previous restrictions of time, tissue type and section thickness. This is the first application of a Golgi-Cox stain to cleared brain tissue, it is investigated and discussed in detail, describing different methodologies that may be used, a comparison between the different clearing techniques and lastly the novel interaction of these techniques with this ultra-rapid stain. Copyright © 2017 Elsevier B.V. All rights reserved.

Juvenile localized scleroderma with port wine stain: coincidental or possible common pathogenetic association.

Science.gov (United States)

Kacar, Seval Dogruk; Ozuguz, Pinar; Polat, Serap; Kacar, Emre; Polat, Onur; Tokyol, Cigdem

2015-01-01

Port wine stain and juvenile localized scleroderma are two different dermatoses usually encountered in pediatric age group. Up to now, there are reports of morphea patients initially diagnosed and treated as port wine stain. Coexistence of both diseases is not found yet. We herein present a case of juvenile localized scleroderma on the left side of trunk, with congenital port wine stain located on the ipsilateral face at V1-V2 distribution.

Soil degradation effect on biological activity in Mediterranean calcareous soils

Science.gov (United States)

Roca-Pérez, L.; Alcover-Sáez, S.; Mormeneo, S.; Boluda, R.

2009-04-01

Soil degradation processes include erosion, organic matter decline, compaction, salinization, landslides, contamination, sealing and biodiversity decline. In the Mediterranean region the climatological and lithological conditions, together with relief on the landscape and anthropological activity are responsible for increasing desertification process. It is therefore considered to be extreme importance to be able to measure soil degradation quantitatively. We studied soil characteristics, microbiological and biochemical parameters in different calcareous soil sequences from Valencia Community (Easter Spain), in an attempt to assess the suitability of the parameters measured to reflect the state of soil degradation and the possibility of using the parameters to assess microbiological decline and soil quality. For this purpose, forest, scrubland and agricultural soil in three soil sequences were sampled in different areas. Several sensors of the soil biochemistry and microbiology related with total organic carbon, microbial biomass carbon, soil respiration, microorganism number and enzyme activities were determined. The results show that, except microorganism number, these parameters are good indicators of a soil biological activity and soil quality. The best enzymatic activities to use like indicators were phosphatases, esterases, amino-peptidases. Thus, the enzymes test can be used as indicators of soil degradation when this degradation is related with organic matter losses. There was a statistically significant difference in cumulative O2 uptake and extracellular enzymes among the soils with different degree of degradation. We would like to thank Spanish government-MICINN for funding and support (MICINN, project CGL2006-09776).

Identification of blue staining vaccine-derived material in inflammatory lesions using cultured canine macrophages.

Science.gov (United States)

Scruggs, Jennifer L; LeBlanc, Casey J

2015-03-01

Vaccine reactions are described in cytology textbooks as having eosinophilic to magenta colored globules within and admixed with inflammatory cells. Recently, we have seen increased numbers of inflammatory lesions containing blue to blue-gray globular material, with historical information suggesting an association with rabies vaccination. The purpose of the study was to confirm the blue-gray and the eosinophilic material observed microscopically in some inflammatory lesions as being vaccine-derived. Three different vaccines were cytocentrifuged and Wright stained. Vaccine aliquots were also added to the culture media of canine-derived macrophages for 24 hours and the cells subsequently harvested, cytocentrifuged, and Wright stained. The globular material present in both preparations was compared to that observed in vaccine-induced inflammatory lesions. Morin staining was used to identify metal within vaccine material in both in vitro- and in vivo-derived cytology samples. Vaccine-derived material has a characteristic color and appearance. Appearance of the material was consistent in cytologic samples, in cells incubated with the vaccine, and in cytocentrifuged preparations of the vaccine vial contents. The blue-gray globules stained positively for Morin stain, while the eosinophilic material did not stain. Vaccine-induced inflammatory lesions may contain blue to blue-gray or magenta stained globular material. Blue-gray material was associated with administration of rabies vaccine Imrab 3 TF and the observed material may be metal-containing adjuvant. Magenta material was associated with other vaccines and negative for Morin stain, suggesting a metal-free adjuvant. © 2014 American Society for Veterinary Clinical Pathology.

Development of a preparation and staining method for fetal erythroblasts in maternal blood : Simultaneous immunocytochemical staining and FISH analysis

NARCIS (Netherlands)

Oosterwijk, JC; Mesker, WE; Ouwerkerk-van Velzen, MCM; Knepfle, CFHM; Wiesmeijer, KC; van den Burg, MJM; Beverstock, GC; Bernini, LF; van Ommen, Gert-Jan B; Kanhai, HHH; Tanke, HJ

1998-01-01

In order to detect fetal nucleated red blood cells (NRBCs) in maternal blood, a protocol was developed which aimed at producing a reliable staining method for combined immunocytochemical and FISH analysis. The technique had to be suitable for eventual automated screening of slides. Chorionic villi

The Role of Hemiwicking on the Shape of a Blood Drop Stain

Science.gov (United States)

Shiri, Samira; Martin, Kenneth; Bird, James

2017-11-01

Blood pattern analysis (BPA) typically assumes that an elliptical stain is due to oblique drop impact. From the eccentricity of the elliptical stain - while also accounting for gravity and drag - the source and trajectory of the blood drops can be estimated. Yet, these models generally neglect any fluid motion following impact that could influence the shape of the stain. Here we demonstrate that under certain conditions on certain materials, a blood drop will undergo anisotropic hemiwicking. Through systemic experiments and modeling, we aim to better understand this phenomenon with the goal of ultimately decreasing the uncertainty in crime scene reconstruction.

Temporal variation of VOC emission from solvent and water based wood stains

Science.gov (United States)

de Gennaro, Gianluigi; Loiotile, Annamaria Demarinis; Fracchiolla, Roberta; Palmisani, Jolanda; Saracino, Maria Rosaria; Tutino, Maria

2015-08-01

Solvent- and water-based wood stains were monitored using a small test emission chamber in order to characterize their emission profiles in terms of Total and individual VOCs. The study of concentration-time profiles of individual VOCs enabled to identify the compounds emitted at higher concentration for each type of stain, to examine their decay curve and finally to estimate the concentration in a reference room. The solvent-based wood stain was characterized by the highest Total VOCs emission level (5.7 mg/m3) that decreased over time more slowly than those related to water-based ones. The same finding was observed for the main detected compounds: Benzene, Toluene, Ethylbenzene, Xylenes, Styrene, alpha-Pinene and Camphene. On the other hand, the highest level of Limonene was emitted by a water-based wood stain. However, the concentration-time profile showed that water-based product was characterized by a remarkable reduction of the time of maximum and minimum emission: Limonene concentration reached the minimum concentration in about half the time compared to the solvent-based product. According to AgBB evaluation scheme, only one of the investigated water-based wood stains can be classified as a low-emitting product whose use may not determine any potential adverse effect on human health.

Physical behaviour of calcareous nannofossil ooze and effects of clay and organic matter on pelagic sediment stability: experimental approach using laboratory flumes

DEFF Research Database (Denmark)

Buls, Toms

This thesis explores the subject of physical behaviour of ancient calcareous nannofossil ooze that eventually formed kilometre-thick Upper Cretaceous chalk succession over vast areas of NW Europe and more than 65 Ma years later forms valuable hydrocarbon and ground-water reservoirs. This thesis...... porosity range (85–60 %). A transition from simple to complex erosional behaviour has been identified mostly when bed porosity decreases below 80 %. This complex erosion required definition of multiple erosion thresholds. Typically, erosion thresholds were increasing with decreasing bed porosity...

Juvenile localized scleroderma with port wine stain: Coincidental or possible common pathogenetic association

Directory of Open Access Journals (Sweden)

Seval Dogruk Kacar

2015-01-01

Full Text Available Port wine stain and juvenile localized scleroderma are two different dermatoses usually encountered in pediatric age group. Up to now, there are reports of morphea patients initially diagnosed and treated as port wine stain. Coexistence of both diseases is not found yet. We herein present a case of juvenile localized scleroderma on the left side of trunk, with congenital port wine stain located on the ipsilateral face at V1-V2 distribution.

The usefulness of changing focus during examination using Gram staining as initial diagnostic clue for infective tuberculosis.

Science.gov (United States)

Atsukawa, Yoshiko; Kawakami, Sayoko; Asahara, Miwa; Ishigaki, Shinobu; Tanaka, Takashi; Ono, Yasuo; Nishiya, Hajime; Fujisaki, Ryuichi; Koga, Ichiro; Ota, Yasuo; Miyazawa, Yukihisa

2011-08-01

Gram staining is a useful technique for detecting bacteria but is highly questionable in detecting Mycobacterium tuberculosis. Its detection generally requires special staining, such as Ziehl-Neelsen staining. We experienced three cases in which tuberculosis was first suggested by Gram staining of sputum or pus, confirmed by Ziehl-Neelsen staining, and diagnosed by polymerase chain reaction or culture. To find colorless tubercle bacilli in clinical samples with various organisms, varying the focus to slightly longer and shorter during study of the slides is indispensable. We present criteria for detecting infective pulmonary tuberculosis in Gram staining. First, in the ordinary focus, weakly stained, thin, gram-positive bacilli are found; second, with a slightly longer focus distance, the thin, cord-like, conspicuous gram-positive bacilli can be observed; and third, with a shorter focus distance, the gram-positive bacilli have changed into the brightened, colorless, or ghost ones. Four laboratory technologists each evaluated 20 Gram-stained samples after being lectured on the criteria, with no prior information about the sample. They accurately evaluated the presence of the bacilli in Gram-stained preparations in more than 90% of samples containing 3+ bacilli on Ziehl-Neelsen staining. Gram staining is available as an easy and rapid initial clue to recognize highly infective tuberculosis.

Localization of mitochondria in living cells with rhodamine 123.

Science.gov (United States)

Johnson, L V; Walsh, M L; Chen, L B

1980-01-01

The laser dye rhodamine 123 is shown to be a specific probe for the localization of mitochondria in living cells. By virtue of its selectivity for mitochondria and its fluorescent properties, the detectability of mitochondria stained with rhodamine 123 is significantly improved over that provided by conventional light microscopic techniques. With the use of rhodamine 123, it is possible to detect alterations in mitochondrial distribution following transformation by Rous sarcoma virus and changes in the shape and organization of mitochondria induced by colchicine treatment. Images PMID:6965798

An optimized staining technique for the detection of Gram positive and Gram negative bacteria within tissue.

Science.gov (United States)

Becerra, Sandra C; Roy, Daniel C; Sanchez, Carlos J; Christy, Robert J; Burmeister, David M

2016-04-12

Bacterial infections are a common clinical problem in both acute and chronic wounds. With growing concerns over antibiotic resistance, treatment of bacterial infections should only occur after positive diagnosis. Currently, diagnosis is delayed due to lengthy culturing methods which may also fail to identify the presence of bacteria. While newer costly bacterial identification methods are being explored, a simple and inexpensive diagnostic tool would aid in immediate and accurate treatments for bacterial infections. Histologically, hematoxylin and eosin (H&E) and Gram stains have been employed, but are far from optimal when analyzing tissue samples due to non-specific staining. The goal of the current study was to develop a modification of the Gram stain that enhances the contrast between bacteria and host tissue. A modified Gram stain was developed and tested as an alternative to Gram stain that improves the contrast between Gram positive bacteria, Gram negative bacteria and host tissue. Initially, clinically relevant strains of Pseudomonas aeruginosa and Staphylococcus aureus were visualized in vitro and in biopsies of infected, porcine burns using routine Gram stain, and immunohistochemistry techniques involving bacterial strain-specific fluorescent antibodies as validation tools. H&E and Gram stain of serial biopsy sections were then compared to a modification of the Gram stain incorporating a counterstain that highlights collagen found in tissue. The modified Gram stain clearly identified both Gram positive and Gram negative bacteria, and when compared to H&E or Gram stain alone provided excellent contrast between bacteria and non-viable burn eschar. Moreover, when applied to surgical biopsies from patients that underwent burn debridement this technique was able to clearly detect bacterial morphology within host tissue. We describe a modification of the Gram stain that provides improved contrast of Gram positive and Gram negative microorganisms within host

Weathering effects on materials from historical stained glass windows

Directory of Open Access Journals (Sweden)

García-Heras, M.

2003-06-01

Full Text Available A selection of materials (stained glasses, lead cames, support elements and putty from historical stained glass windows of different periods (13th-19th centuries have been studied. Optical microscopy, scanning electron microscopy, energy dispersive X-ray spectrometry and X-ray diffraction were used as characterization techniques. Degradation of historical stained glass windows is due to the particular chemical composition oftlie materials used for their production: stained glasses, lead network, metallic support elements and refilling putty. However, the presence of a given chemical composition is not the only factor involved in the degradation process. It is necessary the occurrence of other external factors that contribute to the development and progress of alteration problems in the materials mentioned above. The presence of gaseous pollution in the air produces a negative interaction with the surface of the stained glass windows materials. Firstly, the stained glasses and the grisailles begin a dealkalinisation process and a silica gel layer is formed during the early contact between the glasses and the wet environment. After that, insoluble salt deposits and corrosion crusts are formed as a consequence of a deeper chemical attack which results in a depolymerisation of the glass network. The lead cames and the metallic support elements are also altered by weathering. Such materials are oxidized and both pits and crusts appear on their surfaces. The transport of ions and other substances from the corrosion crusts of the metallic elements gives rise new deposits upon the stained glasses, which could intensify their own degradation processes. The putty experiments a noticeable shrinkage and cracking. Likewise, adverse environmental conditions favour the transport of putty substances towards the other materials of the stained glass window, thereby increasing the crusts thickness and adding elements that contribute to the total alteration of the

Teeth re-whitening effect of strawberry juice on coffee stained teeth

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Annisya Pramesti

2018-01-01

Full Text Available Many people favor coffee. However, regarding health and aesthetic dentistry, coffee gives a negative effect. Tanin in coffee causes a brown stain on the tooth surface. Therefore, in aesthetic dental care, teeth whitening has become popular matter. One of the natural ingredients used for teeth whitening treatment is strawberry. The purpose of this study was to obtained data regarding the effect of strawberry juice on the re-whitening process of the coffee-stained tooth enamel surface. This study was a pure experimental in-vitro using Friedman and Wilcoxon Matched Pairs Tests for statistical analysis. The population of this study was anterior teeth. The samples were maxillary central incisors. The sampling technique using sample size determination based on the testing formulas of the difference of two average data pairs resulted in 11 specimens. The result of the research showed that all coffee-stained teeth sample had an increasing enamel colour index. The samples were then applied with strawberry juice resulted in a significant average difference colour index value indicated by p<0.001. The conclusion of this research indicated that there was an effect of strawberry juice on the coffee-stained teeth re-whitening process.

WITHDRAWN: Amnioinfusion for meconium-stained liquor in labour.

Science.gov (United States)

Hofmeyr, G Justus

2009-01-21

Amnioinfusion aims to prevent or relieve umbilical cord compression during labour by infusing a solution into the uterine cavity. It is also thought to dilute meconium when present in the amniotic fluid and so reduce the risk of meconium aspiration. However, it may be that the mechanism of effect is that it corrects oligohydramnios (reduced amniotic fluid), for which thick meconium staining is a marker. The objective of this review was to assess the effects of amnioinfusion for meconium-stained liquor on perinatal outcome. The Cochrane Pregnancy and Childbirth Group trials register (October 2001) and the Cochrane Controlled Trials Register (Issue 3, 2001) were searched. Randomised trials comparing amnioinfusion with no amnioinfusion for women in labour with moderate or thick meconium-staining of the amniotic fluid. Eligibility and trial quality were assessed by one reviewer. Twelve studies, most involving small numbers of participants, were included. Under standard perinatal surveillance, amnioinfusion was associated with a reduction in the following: heavy meconium staining of the liquor (relative risk 0.03, 95% confidence interval 0.01 to 0.15); variable fetal heart rate deceleration (relative risk 0.65, 95% confidence interval 0.49 to 0.88); and reduced caesarean section overall (relative risk 0.82, 95% confidence interval 0.69 to 1.97). No perinatal deaths were reported. Under limited perinatal surveillance, amnioinfusion was associated with a reduction in the following: meconium aspiration syndrome (relative risk 0.24, 95% confidence interval 0.12 to 0.48); neonatal hypoxic ischaemic encephalopathy (relative risk 0.07, 95% confidence interval 0.01 to 0.56) and neonatal ventilation or intensive care unit admission (relative risk 0.56, 95% confidence interval 0.39 to 0.79); there was a trend towards reduced perinatal mortality (relative risk 0.34, 95% confidence interval 0.11 to 1.06). Amnioinfusion is associated with improvements in perinatal outcome

Prophylactic cefazolin in amnioinfusions administered for meconium-stained amniotic fluid.

Science.gov (United States)

Edwards, R K; Duff, P

1999-01-01

OBJECTIVE: To determine if amnioinfusion with an antibiotic solution decreased the rate of clinical chorioamnionitis and puerperal endometritis in patients with meconium-stained amniotic fluid. METHODS: Patients in labor at 36 weeks of gestation or greater with singleton pregnancies and meconium-stained amniotic fluid were randomized to receive either cefazolin, 1 g/1,000 mL, of normal saline (n = 90) or normal saline (n = 93) amnioinfusion. Rates of clinically diagnosed chorioamnionitis and endometritis and of suspected and culture-proven neonatal infection were determined. RESULTS: Between the study and control groups, the incidences of clinical chorioamnionitis (7.8% vs. 8.6%), endometritis (2.4% vs. 3.5%), aggregate intrauterine infection (10.0% vs. 11.8%), suspected neonatal infection (17.8% vs. 21.5%), and proven neonatal infection (0.0% vs. 2.2%) were not significantly different. CONCLUSIONS: Prophylactic use of cefazolin in amnioinfusions did not significantly reduce rates of maternal or neonatal infection in patients with meconium-stained amniotic fluid. PMID:10371474

Microscopic analysis of MTT stained boar sperm cells

African Journals Online (AJOL)

tulyasys

2015-06-08

2H-tetrazolium bromide is widely used for assessment of cytotoxicity, cell viability, and proliferation studies in cell biology (van Meerloo et al., 2011;. Stockert et al., 2012). The stain is abbreviated as MTT.

Propidium iodide (PI) stains Nissl bodies and may serve as a quick marker for total neuronal cell count.

Science.gov (United States)

Niu, Junfei; Li, Chunman; Wu, Haihui; Feng, Xianling; Su, Qingning; Li, Shihe; Zhang, Lihong; Yew, David Tai Wai; Cho, Eric Yu Pang; Sha, Ou

2015-03-01

Propidium iodide (PI) reacts with both DNA and RNA and is a commonly used fluorescent reagent for nucleic acid staining. The aim of the study was to compare the cellular staining patterns of PI with that of Nissl staining in rat nervous tissues and to report a modified staining method that selectively labels Nissl bodies in neurons. Cryosections and paraffin sections of different tissues of normal Sprague-Dawley rats, including trigeminal ganglia, dorsal root ganglia, spinal cord, liver, and small intestine, were stained by either PI or the hematoxylin and eosin method. Some sections were treated with RNase or DNase before the above staining, and some were double stained with PI and a Nissl stain. The sections were observed by light, fluorescence or confocal microscopy. Results showed strong PI signals detected as patterns of granules in the neuronal cytoplasm of all nervous tissues, whereas the staining of neuronal nuclei was weaker. In contrast, nuclei of neuroglial cells were strongly stained by PI, while the cytoplasm was not obviously stained. Pretreatment of the neural tissue with RNase abolished the PI signals. Furthermore, the PI positive granules in neuronal cytoplasm co-localized with Nissl bodies stained by the fluorescent Nissl stain. When the tissue was pretreated with DNase, PI only stained the cytoplasmic granules of neurons, but not that of glial cells. Our results show that PI stains Nissl bodies and may serve as an economical and convenient neuron marker for neuronal cell counting when specific neural markers such as antibodies are not readily available. Copyright © 2015. Published by Elsevier GmbH.

Vibrational imaging of newly synthesized proteins in live cells by stimulated Raman scattering microscopy

Science.gov (United States)

Wei, Lu; Yu, Yong; Shen, Yihui; Wang, Meng C.; Min, Wei

2013-01-01

Synthesis of new proteins, a key step in the central dogma of molecular biology, has been a major biological process by which cells respond rapidly to environmental cues in both physiological and pathological conditions. However, the selective visualization of a newly synthesized proteome in living systems with subcellular resolution has proven to be rather challenging, despite the extensive efforts along the lines of fluorescence staining, autoradiography, and mass spectrometry. Herein, we report an imaging technique to visualize nascent proteins by harnessing the emerging stimulated Raman scattering (SRS) microscopy coupled with metabolic incorporation of deuterium-labeled amino acids. As a first demonstration, we imaged newly synthesized proteins in live mammalian cells with high spatial–temporal resolution without fixation or staining. Subcellular compartments with fast protein turnover in HeLa and HEK293T cells, and newly grown neurites in differentiating neuron-like N2A cells, are clearly identified via this imaging technique. Technically, incorporation of deuterium-labeled amino acids is minimally perturbative to live cells, whereas SRS imaging of exogenous carbon–deuterium bonds (C–D) in the cell-silent Raman region is highly sensitive, specific, and compatible with living systems. Moreover, coupled with label-free SRS imaging of the total proteome, our method can readily generate spatial maps of the quantitative ratio between new and total proteomes. Thus, this technique of nonlinear vibrational imaging of stable isotope incorporation will be a valuable tool to advance our understanding of the complex spatial and temporal dynamics of newly synthesized proteome in vivo. PMID:23798434

The effect of corrosion on stained glass windows

Directory of Open Access Journals (Sweden)

Laissner, Johanna

1996-06-01

Full Text Available Stained glass windows belong to the most important cultural heritage of Europe. Within the last decades a disastrous deterioration took place. The wonderful stained glass windows and their glass paintings as pieces of art are acutely menaced by environmental corrosive influences. This corrosion process is a very complex reaction which is not only influenced by temperature and humidity changes but also by gaseous pollutants like sulfur dioxide, nitrogen oxides or ozone, by dust and air, microorganisms as well as synergetic interactions. Strongly affected by these environmental attacks are medieval stained glasses due to their chemical composition. They have a low content in silica and high contents of modifier ions (e.g. potassium and calcium. The corrosion phenomena can range from predominantly pitting on the surface to the formation of thick corrosion crusts which are turning the panel opaque and thus reducing strongly the transparency of the windows. In order to set up a conservation and restoration concept, it is necessary to know about the environmental conditions to which the stained glass windows are exposed. For this purpose very corrosion sensitive model glasses (so called glass sensors were developed which have a similar chemical composition as historic stained glasses. They exhibit the same corrosion reactions but react much faster, and are now widely used to estimate corrosive stresses on stained glass windows to give basic information about the corrosive impacts which work on the historic glasses. In this paper principle corrosion mechanisms of stained glass windows and their enhancing factors are discussed. For the evaluation of the environmental impact, the application of glass sensors is demonstrated.

Las vidrieras coloreadas pertenecen al legado cultural más importante de Europa. En las últimas décadas se ha producido en ellas un desastroso deterioro. Las maravillosas vidrieras coloreadas y sus policromías est

Proposals for best-quality immunohistochemical staining of paraffin-embedded brain tissue slides in forensics.

Science.gov (United States)

Trautz, Florian; Dreßler, Jan; Stassart, Ruth; Müller, Wolf; Ondruschka, Benjamin

2018-01-03

Immunohistochemistry (IHC) has become an integral part in forensic histopathology over the last decades. However, the underlying methods for IHC vary greatly depending on the institution, creating a lack of comparability. The aim of this study was to assess the optimal approach for different technical aspects of IHC, in order to improve and standardize this procedure. Therefore, qualitative results from manual and automatic IHC staining of brain samples were compared, as well as potential differences in suitability of common IHC glass slides. Further, possibilities of image digitalization and connected issues were investigated. In our study, automatic staining showed more consistent staining results, compared to manual staining procedures. Digitalization and digital post-processing facilitated direct analysis and analysis for reproducibility considerably. No differences were found for different commercially available microscopic glass slides regarding suitability of IHC brain researches, but a certain rate of tissue loss should be expected during the staining process.

Staining Methods for Normal and Regenerative Myelin in the Nervous System.

Science.gov (United States)

Carriel, Víctor; Campos, Antonio; Alaminos, Miguel; Raimondo, Stefania; Geuna, Stefano

2017-01-01

Histochemical techniques enable the specific identification of myelin by light microscopy. Here we describe three histochemical methods for the staining of myelin suitable for formalin-fixed and paraffin-embedded materials. The first method is conventional luxol fast blue (LFB) method which stains myelin in blue and Nissl bodies and mast cells in purple. The second method is a LBF-based method called MCOLL, which specifically stains the myelin as well the collagen fibers and cells, giving an integrated overview of the histology and myelin content of the tissue. Finally, we describe the osmium tetroxide method, which consist in the osmication of previously fixed tissues. Osmication is performed prior the embedding of tissues in paraffin giving a permanent positive reaction for myelin as well as other lipids present in the tissue.

[Evaluation of visualization of biological stains with the use of alternative light source (ALS) for the purpose of genetic identification. Part I. Blood and saliva stains analysis].

Science.gov (United States)

Szeremeta, Michał; Pepiński, Witold; Niemcunowicz-Janica, Anna; Skawrońska, Małgorzata; Sackiewicz, Adam; Ptaszyńska-Sarosiek, Iwona; Okłota, Magdalena

2010-01-01

The objective of the investigation was evaluation of visualization of human blood and saliva stains with the use of alternative light source for the purpose of genetic identification. Experimental bloodstains on the bright base were the most clearly seen in the natural light and white light, up to blood dilution of 1:600. Complete typeability of AmpFISTR SGM Plus kit profiles was obtained from bloodstains at dilution 1:1500. Partial AmpFISTR SGM Plus kit profiles were typed from bloodstains at dilutions 1:1750 and 1:2000. Experimental saliva stains on the light-colored base were completely invisible in the natural light and white light, while they were visualized at wavelength range 300-415 nm through yellow goggles, and at wavelength range 300-455 nm through orange goggles at saliva dilution 1: 600. Complete typeability of AmpFISTR SGM Plus kit loci was obtained from saliva stains at dilution 1:1750. Partial AmpFISTR SGM Plus kit profiles were typed from saliva stains at dilution 1:2000. The wavelength of 455 nm and orange goggles were the optimal set for visualization of bloodstains on various, noncontrasting materials. Other useful wavelength/combinations of goggles were CSS light/red goggles. In case of saliva, the most useful general condition for visualization of stains on various, non-contrasting materials was with the wavelength set to 300-415 nm, while wearing yellow goggles. Other useful combinations of wavelength/goggles were 300-455 nm/orange or red goggles, and also CSS light/orange or red goggles.

Gram staining of protected pulmonary specimens in the early diagnosis of ventilator-associated pneumonia.

Science.gov (United States)

Mimoz, O; Karim, A; Mazoit, J X; Edouard, A; Leprince, S; Nordmann, P

2000-11-01

We evaluated prospectively the use of Gram staining of protected pulmonary specimens to allow the early diagnosis of ventilator-associated pneumonia (VAP), compared with the use of 60 bronchoscopic protected specimen brushes (PSB) and 126 blinded plugged telescopic catheters (PTC) obtained from 134 patients. Gram stains were from Cytospin slides; they were studied for the presence of microorganisms in 10 and 50 fields by two independent observers and classified according to their Gram stain morphology. Quantitative cultures were performed after serial dilution and plating on appropriate culture medium. A final diagnosis of VAP, based on a culture of > or = 10(3) c.f.u. ml-1, was established after 81 (44%) samplings. When 10 fields were analysed, a strong relationship was found between the presence of bacteria on Gram staining and the final diagnosis of VAP (for PSB and PTC respectively: sensitivity 74 and 81%, specificity 94 and 100%, positive predictive value 91 and 100%, negative predictive value 82 and 88%). The correlation was less when we compared the morphology of microorganisms observed on Gram staining with those of bacteria obtained from quantitative cultures (for PSB and PTC respectively: sensitivity 54 and 69%, specificity 86 and 89%, positive predictive value 72 and 78%, negative predictive value 74 and 84%). Increasing the number of fields read to 50 was associated with a slight decrease in specificity and positive predictive value of Gram staining, but with a small increase in its sensitivity and negative predictive value. The results obtained by the two observers were similar to each other for both numbers of fields analysed. Gram staining of protected pulmonary specimens performed on 10 fields predicted the presence of VAP and partially identified (using Gram stain morphology) the microorganisms growing at significant concentrations, and could help in the early choice of the treatment of VAP. Increasing the number of fields read or having the Gram

Early colonic dysplasia: comparison of differential mucin staining and tritiated thymidine labeling

International Nuclear Information System (INIS)

Chabot, J.A.; Colacchio, T.A.

1985-01-01

Controversy has arisen regarding the interpretation and significance of histochemical changes in the mucin produced by the globlet cells in colonic mucosa. The shift from sulfomucin to sialomucin, which is readily identified utilizing high iron diamine-alcian blue staining techniques, has been alternately interpreted as a specific, early dysplastic and premalignant change or a nonspecific generalized response to trauma and inflammation, among others. An attempt to clarify this issue was made by comparing mucin changes identified by high iron diamine-alcian blue staining techniques with increases in DNA synthetic activity identified utilizing autoradiographic analysis of tritiated thymidine uptake. Male Holtzman rats were treated with 15 weekly subcutaneous injections of dimethylhydrazine (30 mg/kg per week) (10 rats) or placebo (10 rats). The colons were prepared and fixed, sequential sections were stained with hematoxylin-eosin or high iron diamine-alcian blue, autoradiography was performed. Analyses of labeling index showed no difference in normal background crypts between the control and treatment groups nor in crypts adjacent to those displaying abnormal mucin staining. Crypts with abnormal mucin production (sialomucin dominant) had significantly higher labeling indexes when compared with those of control animals (p less than 0.005). These findings indicate that the shifts in mucin production identified with high iron diamine-alcian blue staining represent crypts with increased and abnormally distributed mitotic activity that is an early dysplastic response to the carcinogenic stimulus

Gram and acridine orange staining for diagnosis of septic arthritis in different patient populations.

Science.gov (United States)

Cunningham, Gregory; Seghrouchni, Khalid; Ruffieux, Etienne; Vaudaux, Pierre; Gayet-Ageron, Angèle; Cherkaoui, Abdessalam; Godinho, Eduardo; Lew, Daniel; Hoffmeyer, Pierre; Uçkay, Ilker

2014-06-01

The sensitivity of Gram staining is known to be suboptimal for the diagnosis of native joint septic arthritis. We lack information about the accuracy of Gram compared to other microscopic staining techniques for predicting infection in different patient populations. This was a cohort study with cost evaluations at the Orthopaedic Service of Geneva University Hospitals (January 1996-October 2012). Among 500 episodes of arthritis (196 with immunosuppression, 227 with underlying arthroplasties and 69 with gout or other crystals in synovial fluid), Gram staining revealed pathogens in 146 episodes (146/500, 29 %) or in 146 of the 400 culture-positive episodes (37 %). Correlation between the Gram and acridine staining of the same sample was good (Spearman 0.85). Overall, the sensitivity, specificity, positive predictive value and negative predictive value of Gram stain for rapid diagnosis of septic arthritis was 0.37, 0.99, 0.99 and 0.28, respectively, compared to microbiological cultures. Quite similar values were recorded across the different patient subpopulations, in particular for sensitivity values that were 0.33 for patients with prosthetic joint infections, 0.40 for immunosuppressed patients, 0.36 for patients under antibiotic administration and 0.52 for patients with concomitant crystalline disease. The sensitivity of Gram or acridine orange staining for a rapid diagnosis of episodes of septic arthritis is suboptimal compared to microbiological culture, regardless of underlying conditions, immunosuppression or antibiotic therapy. The sensitivity in the presence of synovial fluid crystals is moderate. Acridine orange and Gram stains are equivalent.

Combined histochemical staining, RNA amplification, regional, and single cell cDNA analysis within the hippocampus.

Science.gov (United States)

Ginsberg, Stephen D; Che, Shaoli

2004-08-01

The use of five histochemical stains (cresyl violet, thionin, hematoxylin & eosin, silver stain, and acridine orange) was evaluated in combination with an expression profiling paradigm that included regional and single cell analyses within the hippocampus of post-mortem human brains and adult mice. Adjacent serial sections of human and mouse hippocampus were labeled by histochemistry or neurofilament immunocytochemistry. These tissue sections were used as starting material for regional and single cell microdissection followed by a newly developed RNA amplification procedure (terminal continuation (TC) RNA amplification) and subsequent hybridization to custom-designed cDNA arrays. Results indicated equivalent levels of global hybridization signal intensity and relative expression levels for individual genes for hippocampi stained by cresyl violet, thionin, and hematoxylin & eosin, and neurofilament immunocytochemistry. Moreover, no significant differences existed between the Nissl stains and neurofilament immunocytochemistry for individual CA1 neurons obtained via laser capture microdissection. In contrast, a marked decrement was observed in adjacent hippocampal sections stained for silver stain and acridine orange, both at the level of the regional dissection and at the CA1 neuron population level. Observations made on the cDNA array platform were validated by real-time qPCR using primers directed against beta-actin and glyceraldehyde-3 phosphate dehydrogenase. Thus, this report demonstrated the utility of using specific Nissl stains, but not stains that bind RNA species directly, in both human and mouse brain tissues at the regional and cellular level for state-of-the-art molecular fingerprinting studies.

Characterisation of medieval yellow silver stained glass from Convento de Cristo in Tomar, Portugal

Energy Technology Data Exchange (ETDEWEB)

Delgado, J. [Dep. de Conservacao e Restauro, FCT-UNL, Quinta da Torre, 2829-516 Caparica (Portugal); Vilarigues, M. [Dep. de Conservacao e Restauro, FCT-UNL, Quinta da Torre, 2829-516 Caparica (Portugal); VICARTE, FCT-UNL, Quinta da Torre, 2829-516 Caparica (Portugal); Ruivo, A. [VICARTE, FCT-UNL, Quinta da Torre, 2829-516 Caparica (Portugal); REQUIMTE, FCT-UNL, Quinta da Torre, 2829-516 Caparica (Portugal); Corregidor, V.; Silva, R.C. da [Unidade de Fisica e Aceleradores, LFI, ITN, E.N.10, 2686-953 Sacavem (Portugal); CFNUL, Av., Prof. Gama Pinto n 2, 1649-003 Lisboa (Portugal); Alves, L.C., E-mail: lcalves@itn.pt [Unidade de Fisica e Aceleradores, LFI, ITN, E.N.10, 2686-953 Sacavem (Portugal); CFNUL, Av., Prof. Gama Pinto n 2, 1649-003 Lisboa (Portugal)

2011-10-15

Yellow decoration effects in stained glasses using silver staining were first applied in the beginning of the 14th century. The glass piece being decorated was usually painted on its side intended to be facing the exterior environment, and then fired to temperatures between 500 and 650 {sup o}C, resulting in colours ranging from pale lemon to deep orange. Stained glass fragments painted by this process and belonging to the Convento de Cristo, in Tomar, Portugal, were characterised using micro-PIXE, and complemented with other analytical techniques, namely UV-Vis spectroscopy and XRF. Preliminary analysis showed that a mixture of Ag and Cu was used for the production of the yellow staining. In order to understand this staining process and the influence of the firing temperature on the resulting colours, several soda and potash glasses with compositions similar to those of medieval glasses were produced and characterised. The role played by the addition of Cu in the final colours was also investigated.

Differences in staining intensities affect reported occurrences and concentrations of Giardia spp. in surface drinking water sources.

Science.gov (United States)

Alderisio, K A; Villegas, L F; Ware, M W; McDonald, L A; Xiao, L; Villegas, E N

2017-12-01

USEPA Method 1623, or its equivalent, is currently used to monitor for protozoan contamination of surface drinking water sources worldwide. At least three approved staining kits used for detecting Cryptosporidium and Giardia are commercially available. This study focuses on understanding the differences among staining kits used for Method 1623. Merifluor and EasyStain labelling kits were used to monitor Cryptosporidium oocyst and Giardia cyst densities in New York City's raw surface water sources. In the year following a change to the approved staining kits for use with Method 1623, an anomaly was noted in the occurrence of Giardia cysts in New York City's raw surface water. Specifically, Merifluor-stained samples had higher Giardia cyst densities as compared with those stained with EasyStain. Side by side comparison revealed significantly lower fluorescence intensities of Giardia muris as compared with Giardia duodenalis cysts when labelled with EasyStain. This study showed very poor fluorescence intensity signals by EasyStain on G. muris cysts resulting in lower cyst counts, while Merifluor, with its broader Giardia cyst staining specificity, resulted in higher cyst counts, when using Methods 1623. These results suggest that detected Giardia cyst concentrations are dependent on the staining kits used, which can result in a more or less conservative estimation of occurrences and densities of zoonotic Giardia cysts by detecting a broader range of Giardia species/Assemblages. Published 2017. This article is a U.S. Government work and is in the public domain in the USA.

Gloss and Stain Resistance of Ceramic-Polymer CAD/CAM Restorative Blocks.

Science.gov (United States)

Lawson, Nathaniel C; Burgess, John O

2016-03-01

To evaluate the gloss and stain resistance of several new ceramic-polymer CAD/CAM blocks Specimens (4 mm) were sectioned from: Enamic (polymer-infused ceramic), LAVA Ultimate (nano-ceramic reinforced polymer), e.max (lithium disilicate), Paradigm C (porcelain), and Paradigm MZ100 (composite). Specimens were wet polished on a polishing wheel to either 320 grit silicon paper (un-polished, N = 8) or 2000 grit silicon carbide papers followed by a 0.05 μm alumina slurry (polished, N = 8). Initial gloss and color (L*a*b*) values were measured. Specimens were stored in a staining solution at 37°C in darkness for 12 days (simulating 1 year). After storage, L*a*b* values re-measured. Change in color was reported as ΔE00 based on the CIEDE2000 formula. Gloss and ΔE00 were analyzed by two-way analysis of variance (ANOVA) (alpha = .05). Separate one-way ANOVA and Tukey post-hoc analyses were performed for both polish conditions and all materials. Two-way ANOVA showed that factors material, polish and their interaction were significant for both gloss and ΔE00 (p gloss and less color change than all other materials. The composition and polish of CAD/CAM materials affects gloss and stain resistance. Ceramic-polymer hybrid materials can achieve the high gloss required for esthetic restorations. These materials should be polished in order to minimize staining. If polished, all of the tested materials exhibited clinically acceptable color changes at 1 year of simulated staining. (J Esthet Restor Dent 28:S40-S45, 2016). © 2015 Wiley Periodicals, Inc.

Paleoclimate and paleoecology of the mid Cretaceous traced by calcareous nannofossils

Science.gov (United States)

Bottini, Cinzia; Erba, Elisabetta

2016-04-01

The Aptian - early Turonian time interval was marked by major environmental changes at regional to global scale. Specifically, it was a time of super-greenhouse conditions and the climate-ocean system experienced phases of stability perturbed by transient, sometimes prolonged, anomalies of the global carbon cycle. Several regional to global episodes occurred over this time interval: the early Aptian Oceanic Anoxic Event (OAE) 1a, the early Albian OAE 1b, the latest Albian OAE 1d, the Mid-Cenomanian Event (MCE I) and the Cenomanian - Turonian OAE 2. Decades of multidisciplinary research focused on OAEs since they constitute ideal case-histories for the understanding of our planet functioning during perturbations of the C cycle. They were, in fact, characterized by excess CO2, intense volcanism, and altered climate and oceanic chemistry. A useful tool for reconstructing the marine ecosystem dynamics of the past, is calcareous nannoplankton, since it is extremely sensitive to changes in surface waters parameters like temperature and nutrient content and interacts with the C cycle through biological processes and production of calcareous oozes. Here, we gathered new quantitative nannofossil data for the Tethys Ocean (Umbria Marche Basin, Italy) to derive climatic fluctuations and changes in ocean fertility during the late Albian - early Turonian. Over this time interval, the Tethys Ocean was characterized by phases of rhythmic black shale deposition controlled by orbital forcing. The Pialli Level is the Tethyan sedimentary expression of the latest Albian OAE 1d, characterized by large-scale occurrence of black shales and a δ13C positive excursion recognized in several deep-marine settings. The other prominent δ13C anomaly coincides with the OAE 2 represented, in Italy, by the Bonarelli Level. Between these two main C-isotopic excursions, a double-spiked minor anomaly identifies the MCE I, lithologically represented by a shift to black shales and black chert bands

Anti-theft device staining on banknotes detected by mass spectrometry imaging.

Science.gov (United States)

Correa, Deleon Nascimento; Zacca, Jorge Jardim; Rocha, Werickson Fortunato de Carvalho; Borges, Rodrigo; de Souza, Wanderley; Augusti, Rodinei; Eberlin, Marcos Nogueira; Vendramini, Pedro Henrique

2016-03-01

We describe the identification and limits of detection of ink staining by mass spectrometry imaging (MSI), as used in anti-theft devices (ATDs). Such ink staining is applied to banknotes during automated teller machine (ATM) explosions. Desorption electrospray ionization (DESI) coupled with high-resolution and high-accuracy orbitrap mass spectrometry (MS) and a moving stage device were applied to obtain 2D molecular images of the major dyes used for staining, that is, 1-methylaminoanthraquinone (MAAQ), rhodamine B (RB) and rhodamine 6G (R6G). MAAQ could not be detected because of its inefficient desorption by DESI from the banknote cellulose surface. By contrast, ATD staining on banknotes is perceptible by the human naked eye only at concentrations higher than 0.2 μg cm(-2), whereas both RB and R6G at concentrations 200 times lower (as low as 0.001 μg cm(-2)) could be easily detected and imaged by DESI-MSI, with selective and specific identification of each analyte and their spatial distribution on samples from suspects. This technique is non-destructive, and no sample preparation is required, which ensures sample preservation for further forensic investigations. Copyright © 2016. Published by Elsevier Ireland Ltd.

Effectiveness of Vascular Markers (Immunohistochemical Stains) in Soft Tissue Sarcomas.

Science.gov (United States)

Naeem, Namra; Mushtaq, Sajid; Akhter, Noreen; Hussain, Mudassar; Hassan, Usman

2018-05-01

To ascertain the effectiveness of IHC markers of vascular origin like CD31, CD34, FLI1 and ERG in vascular soft tissue sarcomas including angiosarcomas, Kaposi sarcomas, epithelioid hemangioendothelioma and a non-vascular soft tissue sarcoma (Epithelioid sarcoma). Descriptive study. Shaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, from 2011 to 2017. Diagnosed cases of angiosarcomas (n=48), epithelioid hemangioendothelioma (n=9), Kaposi sarcoma (n=9) and epithelioid sarcoma (n=20) were selected. Immunohistochemical staining as performed on formalin fixed paraffin embedded sections. The sections were stained for the following markers: CD34 (VENTANA clone Q Bend 10), CD31 (Leica clone 1 A 10), FLI1 (CELL MARQUE clone MRQ-1) and ERG (CELL MARQUE clone EP111). A complete panel of CD34, CD31 and ERG was applied on 8/48 cases of angiosarcomas with triple positivity in 6 cases. Eight cases showed positivity for only CD31 and ERG and 2 cases showed positivity for only ERG. A complete panel of CD34, CD31 and ERG was applied on 3/9 cases of epithelioid hemangioendothelioma with positivity for all markers in 2 cases. Combined positivity for ERG and CD34 was seen in 2 cases and on 4 cases only CD31 immunohistochemical was solely applied with 100% positivity. FLI1 was not applied on any case. Among 9 cases of Kaposi sarcoma, ERG, CD34 and CD31 in combination were applied on only 1 case with triple positivity. Remaining cases show positivity for either CD34, CD31 or FLI1. Majority of cases of epithelioid sarcomas were diagnosed on the basis of cytokeratin and CD34 positivity with loss of INI1. The other vascular markers showed negativity in all cases. Among these four markers, ERG immunohistochemical stain is highly effective for endothelial differentiation due to its specific nuclear staining pattern in normal blood vessel endothelial cells (internal control) as well as neoplastic cells of vascular tumors and lack of background staining.

Effects of iron(III)chelates on the solubility of heavy metals in calcareous soils

Energy Technology Data Exchange (ETDEWEB)

Ylivainio, Kari, E-mail: kari.ylivainio@mtt.f [Department of Applied Chemistry and Microbiology, FIN-00014 University of Helsinki (Finland)

2010-10-15

In this study I evaluated the effects of complexing agents on the solubility of heavy metals in an incubation experiment up to 56 days when complexing agents were applied as Fe-chelates (Fe-EDDS(S,S), Fe-EDDS(mix), Fe-EDTA and Fe-EDDHA) on calcareous soils at a level sufficient to correct Fe chlorosis (0.1 mmol kg{sup -1}). Of these ligands, EDDHA was the most efficient in keeping Fe in water-soluble form, and EDDS increased the solubility of Cu and Zn most, and only EDTA increased the solubility of Cd and Pb. EDTA increased the solubility of Ni steadily during the incubation period, equalling about 5-8% of the added EDTA concentration. [S,S]-EDDS was biodegraded within 56 days, whereas EDDS(mix) was less biodegradable. Ni-chelates were the most recalcitrant against biodegradation. The study shows that even a moderate input of chelates to soil increases the solubility of toxic heavy metals and their risk of leaching. - When correcting Fe chlorosis Fe-EDDS causes lower environmental concern than Fe-EDTA.

Effects of iron(III)chelates on the solubility of heavy metals in calcareous soils

International Nuclear Information System (INIS)

Ylivainio, Kari

2010-01-01

In this study I evaluated the effects of complexing agents on the solubility of heavy metals in an incubation experiment up to 56 days when complexing agents were applied as Fe-chelates (Fe-EDDS(S,S), Fe-EDDS(mix), Fe-EDTA and Fe-EDDHA) on calcareous soils at a level sufficient to correct Fe chlorosis (0.1 mmol kg -1 ). Of these ligands, EDDHA was the most efficient in keeping Fe in water-soluble form, and EDDS increased the solubility of Cu and Zn most, and only EDTA increased the solubility of Cd and Pb. EDTA increased the solubility of Ni steadily during the incubation period, equalling about 5-8% of the added EDTA concentration. [S,S]-EDDS was biodegraded within 56 days, whereas EDDS(mix) was less biodegradable. Ni-chelates were the most recalcitrant against biodegradation. The study shows that even a moderate input of chelates to soil increases the solubility of toxic heavy metals and their risk of leaching. - When correcting Fe chlorosis Fe-EDDS causes lower environmental concern than Fe-EDTA.

Effects of iron(III)chelates on the solubility of heavy metals in calcareous soils.

Science.gov (United States)

Ylivainio, Kari

2010-10-01

In this study I evaluated the effects of complexing agents on the solubility of heavy metals in an incubation experiment up to 56 days when complexing agents were applied as Fe-chelates (Fe-EDDS(S,S), Fe-EDDS(mix), Fe-EDTA and Fe-EDDHA) on calcareous soils at a level sufficient to correct Fe chlorosis (0.1 mmol kg(-1)). Of these ligands, EDDHA was the most efficient in keeping Fe in water-soluble form, and EDDS increased the solubility of Cu and Zn most, and only EDTA increased the solubility of Cd and Pb. EDTA increased the solubility of Ni steadily during the incubation period, equalling about 5-8% of the added EDTA concentration. [S,S]-EDDS was biodegraded within 56 days, whereas EDDS(mix) was less biodegradable. Ni-chelates were the most recalcitrant against biodegradation. The study shows that even a moderate input of chelates to soil increases the solubility of toxic heavy metals and their risk of leaching. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Porcine intestinal mast cells. Evaluation of different fixatives for histochemical staining techniques considering tissue shrinkage

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J. Rieger

2013-07-01

Full Text Available Staining of mast cells (MCs, including porcine ones, is critically dependent upon the fixation and staining technique. In the pig, mucosal and submucosal MCs do not stain or stain only faintly after formalin fixation. Some fixation methods are particularly recommended for MC staining, for example the fixation with Carnoy or lead salts. Zinc salt fixation (ZSF has been reported to work excellently for the preservation of fixation-sensitive antigens. The aim of this study was to establish a reliable histological method for counting of MCs in the porcine intestinum. For this purpose, different tissue fixation and staining methods that also allow potential subsequent immunohistochemical investigations were evaluated in the porcine mucosa, as well as submucosa of small and large intestine. Tissues were fixed in Carnoy, lead acetate, lead nitrate, Zamboni and ZSF and stained subsequently with either polychromatic methylene blue, alcian blue or toluidine blue. For the first time our study reveals that ZSF, a heavy metal fixative, preserves metachromatic staining of porcine MCs. Zamboni fixation was not suitable for histochemical visualization of MCs in the pig intestine. All other tested fixatives were suitable. Alcian blue and toluidine blue co-stained intestinal goblet cells which made a prima facie identification of MCs difficult. The polychromatic methylene blue proved to be the optimal staining. In order to compare MC counting results of the different fixation methods, tissue shrinkage was taken into account. As even the same fixation caused shrinkage-differences between tissue from small and large intestine, different factors for each single fixation and intestinal localization had to be calculated. Tissue shrinkage varied between 19% and 57%, the highest tissue shrinkage was found after fixation with ZSF in the large intestine, the lowest one in the small intestine after lead acetate fixation. Our study emphasizes that MC counting results from

Advances in Automated Plankton Imaging: Enhanced Throughput, Automated Staining, and Extended Deployment Modes for Imaging FlowCytobot

Science.gov (United States)

Sosik, H. M.; Olson, R. J.; Brownlee, E.; Brosnahan, M.; Crockford, E. T.; Peacock, E.; Shalapyonok, A.

2016-12-01

Imaging FlowCytobot (IFCB) was developed to fill a need for automated identification and monitoring of nano- and microplankton, especially phytoplankton in the size range 10 200 micrometer, which are important in coastal blooms (including harmful algal blooms). IFCB uses a combination of flow cytometric and video technology to capture high resolution (1 micrometer) images of suspended particles. This proven, now commercially available, submersible instrument technology has been deployed in fixed time series locations for extended periods (months to years) and in shipboard laboratories where underway water is automatically analyzed during surveys. Building from these successes, we have now constructed and evaluated three new prototype IFCB designs that extend measurement and deployment capabilities. To improve cell counting statistics without degrading image quality, a high throughput version (IFCB-HT) incorporates in-flow acoustic focusing to non-disruptively pre-concentrate cells before the measurement area of the flow cell. To extend imaging to all heterotrophic cells (even those that do not exhibit chlorophyll fluorescence), Staining IFCB (IFCB-S) incorporates automated addition of a live-cell fluorescent stain (fluorescein diacetate) to samples before analysis. A horizontally-oriented IFCB-AV design addresses the need for spatial surveying from surface autonomous vehicles, including design features that reliably eliminate air bubbles and mitigate wave motion impacts. Laboratory evaluation and test deployments in waters near Woods Hole show the efficacy of each of these enhanced IFCB designs.

Supravital dithizone staining in the isolation of human and rat pancreatic islets

DEFF Research Database (Denmark)

Hansen, W A; Christie, M R; Kahn, R

1989-01-01

Dithizone, a zinc chelating agent, is known to selectively stain the islets of Langerhans in the pancreas. In the present study, we have used this stain to aid the identification of islets in material obtained by collagenase digestion of human pancreas. Islets were shown to rapidly and reversibly...... techniques for the large scale isolation of functionally intact human islets....

a comparison of modified and standard papanicolaou staining ...

African Journals Online (AJOL)

2011-07-07

Jul 7, 2011 ... modified pap method and standard Papanicolaou method respectively. The staining characteristics in .... alcohol was replaced by 0.5 % acetic acid and also, .... was 37.1, standard deviation of 8.0 and a median of. 36.5 years.

Modified Cajal's trichrome stain as a diagnostic aid in the study of epithelial pathology

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Karpagaselvi Sanjai

2017-01-01

Full Text Available Background: Diagnosis of initial epithelial pathology maybe difficult in Squamous Cell Carcinoma (SCC, Carcinoma In Situ and other atypical epithelial malignancies, under routine Haematoxylin and Eosin (H and E stain. The detection of minor basement membrane alterations in doubtful cases is both time consuming and confusing. Aims: To evaluate efficacy of Modified Cajal's Trichrome Stain (CTS in relation to Haematoxylin and Eosin for study of epithelial dysplasia, carcinoma in situ, micro invasive SCC, frank SCC, and SCC in lymph nodes. Materials and Methods: Formalin-fixed, paraffin-embedded tissue blocks of mild epithelial dysplasia (n = 2, moderate epithelial dysplasia (n = 2, severe epithelial dysplasia (n = 4, carcinoma in situ (n = 1, micro-invasive SCC (n = 4, verrucous carcinoma (n = 1, and frank OSCC (n = 5 were stained with CTS and H&E. The sections were compared based on set histopathological criteria. Results and Conclusion: In SCC cases stained with CTS, invasion into connective tissue and keratin pearls were strikingly evident. Depth of invasion could be more accurately determined. Tumour cells in lymph node were intensely contrasted and easily discernible. Thus, CTS is a good differential stain, clearly delineating the epithelial elements from the connective tissue elements visually. This helps in tracing the basement membrane very clearly. It is an economic, rapid and easy to use method which cannot replace Haematoxylin and Eosin stain in cancer diagnosis, but can definitely be used adjunctive to it. Prompt diagnosis is crucial to effective treatment, and this stain assists in early and rapid diagnosis of cancer.

Calcareous nannofossil biostratigraphy of Sarcheshmeh and Sanganeh formations at Qaleh Jegh and Yazdan Abad sections (West of Kopet-Dagh Basin

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Azam Gholami Fard

2017-03-01

Full Text Available 1-    Introduction Kopet Dagh Basin is located on the northeast of Iran, extending over Iran, Turkmenistan and Afghanistan with a west-northwest to east-southeast trend. The Iranian part of the basin is located between 61°14ˊ and 54°00ˊE and 38°15ˊ and 35°38ˊ N. It constitutes the second most important hydrocarbon province of Iran after Zagros Basin. Cretaceous sediments are well developed and extensively exposed in this basin. In order to study the Biostratigraphy of Sarcheshme and Sanganeh Formations, the calcareous nannofossil assemblages have been investigated in two stratigraphic sections. Shokri (2000, Hadavi and Shokri (2000, Hadavi and Bodaghi (2000 & 2009, Dehghan (2002, Mahanipour et al. (2011a,b & 2012 and Mahanipour and Kani (2015 studied the calcareous nannofossil biostratigraphy of Sarcheshme or Sanganeh Formation.   2-    Material & Methods The studied sections, the Qaleh Jegh section (located at a distance of 35 km to the northeast of Bojnord, on the Baba Boland mountain; N37°47ˊ57˝ and E57°16ˊ53˝ and Yazdan Abad section (located at north of Yazdan Abad village; N37°55ˊ34˝ and E57°35ˊ10˝. Sarcheshmeh Formation conformably overlies the Tirgan Formation and is in turn overlain by the Sanganeh Formation in both sections and Atamir Formation conformably overlies the Sanganeh Formation. Sarcheshmeh Formation measures 2660 m in Qaleh Jegh section and comprises argillaceous limestone (with limestone intercalations in lower part and shale (with limestone intercalation in upper part. A  fossiliferous limestone separates the Sarcheshmeh and Sanganeh. Sanganeh Formation measures 1400 m and consists of siltstones (with sandstone, shale or limestone intercalation in lower part and shale containing chert nodules (with siltstone intercalation in upper part. At Yazadn Abad section the 655 m thick succession of Sarcheshmeh Formation consists of alternating argillaceous limestone and limestone in lower part and

The effects of ozone and NOx on the deterioration of calcareous stone

International Nuclear Information System (INIS)

Massey, S.W.

1999-01-01

This paper looks at the changes in urban air quality and the effect on building materials with particular regard to their deterioration arising from pollution due to vehicles. The paper aims to review basic information on the likely effect of NO x and ozone on calcareous building materials (limestone, marble, dolomite, calcareous cemented sandstone) by examining experimental and fieldwork relating to the principle reaction of the oxidation of the sulphite to sulphate. NO 2 is only one of many possible oxidants present in the urban and rural environment. A brief synopsis of the effects of other oxidants and inhibitors is given along with a review of the processes involved in aqueous phase oxidation, which seems to be the phase where the reactions take place. Controlling factors in the reaction and oxidation of sulphite to sulphate are the type and porosity of the stone, the level of humidity, the nature of the oxidants and to a lesser extent the presence of other extraneous reactants, e.g. metal oxides, chlorine and ammonia salts. For freshly cut stone unpolished marble is much less reactive than porous limestone and the degree of activity has different relative humidity thresholds. Reaction of the stone with the gaseous compounds occurs during the process of absorption onto the surface. The oxidation is accelerated at the gas-water interface by the presence of NO x , and seems to depend on the NO 2 component but it is clear that NO x is only one of many possible oxidants in the urban and rural environments. Correlation studies of the damage to stone materials are unlikely to pick up the effects of NO x due to the nature of their duration and the rather transient nature of the appearance and removal of nitrates on the stone. Presence of other oxidants and catalysts such as H 2 O 2 , O 2 (catalysed by Fe 3+ and Mn 2+ ), OH, HSO 5 - , SO 4 2- , O 3 , HO 2 , NO 2 - , NO 3 , O 2 - and PAN, plus the fact that the reactions are pH and ionic strength sensitive, add greatly

Cell wall staining with Trypan blue enables quantitative analysis of morphological changes in yeast cells

DEFF Research Database (Denmark)

Liesche, Johannes; Marek, Magdalena; Günther-Pomorski, Thomas

2015-01-01

staining with fluorescent dyes is a valuable tool. Furthermore, cell wall staining is used to facilitate sub-cellular localization experiments with fluorescently-labeled proteins and the detection of yeast cells in non-fungal host tissues. Here, we report staining of Saccharomyces cerevisiae cell wall......Yeast cells are protected by a cell wall that plays an important role in the exchange of substances with the environment. The cell wall structure is dynamic and can adapt to different physiological states or environmental conditions. For the investigation of morphological changes, selective...... with Trypan Blue, which emits strong red fluorescence upon binding to chitin and yeast glucan; thereby, it facilitates cell wall analysis by confocal and super-resolution microscopy. The staining pattern of Trypan Blue was similar to that of the widely used UV-excitable, blue fluorescent cell wall stain...

PERSEPSI DAN TRANSFORMASI VISI DAN MISI PADA CIVITAS AKADEMIKA STAIN PEKALONGAN

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Imam Khanafi

2013-05-01

Full Text Available Penelitian ini mengukur tingkat persepsi visi dan misi civitas akademika STAIN Pekalongan, dan mengukur juga tingkat implementasi sebagai transformasi visi misi tersebut serta menemukan hubungan antara persepsi dengan implementasinya. Kajian ini memiliki signifikan yang strategis dalam konteks manajemen dan pengembangan Pendidikan di STAIN Pekalongan dan lembaga pendidikan lainnya. Hal ini karena posisi visi dan misi sebagai kerangka acuan (frame of reference yang mengarahkan dan menjelaskan kepada keseluruh unsur civitas akademika dalam setiap program kerjanya.

Teeth re-whitening effect of strawberry juice on coffee stained teeth

OpenAIRE

Annisya Pramesti; Tadeus Arufan Jasrin; Opik Taofik Hidayat

2018-01-01

Many people favor coffee. However, regarding health and aesthetic dentistry, coffee gives a negative effect. Tanin in coffee causes a brown stain on the tooth surface. Therefore, in aesthetic dental care, teeth whitening has become popular matter. One of the natural ingredients used for teeth whitening treatment is strawberry. The purpose of this study was to obtained data regarding the effect of strawberry juice on the re-whitening process of the coffee-stained tooth enamel surface. This stu...

INTERNALISASI PENDIDIKAN KARAKTER DI PERGURUAN TINGGI: Studi Kasus di Jurusan Tarbiyah STAIN PONOROGO

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Kharisul Wathoni

2016-05-01

Full Text Available This study will examine the internalization of character values at the Tarbiyah Department of STAIN Ponorogo. It has been found out that STAIN Ponorogo, in particular the Tarbiyah Department, has made efforts to undertake character education to the students through three patterns: during the learning process, during process of academic administrative services, and during extracurricular and intraccurricular activities followed by students at STAIN Ponorogo. The characters to be internalized are honesty, discipline, religiousity, creativity, self-reliance, responsibility, tolerance, communication and responsibility. Keywords: character education, morality, internalization

Liquid dish washing soap: An excellent substitute for xylene and alcohol in hematoxylin and eosin staining procedure

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Surekha Ramulu

2012-01-01

Full Text Available Aims: Liquid dish washing solution (DWS was used as a substitute for xylene to dewax tissue sections during hematoxylin and eosin (H and E staining. The aim was to test and compare the hypothesis that xylene-ethanol free (XEF sections deparaffinized with diluted DWS are better than or at par with the conventional H and E sections. Materials and Methods: Fifty paraffin-embedded tissue blocks was included. One section was stained with conventional HandE (group A and the other with XEF HandE (group B staining method. Slides were scored for parameters: nuclear, cytoplasmic, clarity, uniformity, and crispness of staining. Z test was used for statistical analysis. For accuracy of diagnosis, sensitivity, specificity, positive predictive value, and negative predictive value were tested. Results: Adequate nuclear staining was noted in 94% in group A and 96% in group B, -adequate cytoplasmic staining in 92% in group A and 86% in group B, clarity in 94% of group A and 96% of group B sections, uniform staining in 92% of group A and 80% of group B sections, crisp stain in 96% of group A and 88% of group B sections, and 94% of group A sections stained adequately for diagnosis as compared with 90% in group B sections. Conclusion: Liquid DWS can be used as an alternative and effective substitute to xylene and ethanol in routine HandE staining procedure.

Nonlinear multicontrast microscopy of hematoxylin-and-eosin-stained histological sections

Science.gov (United States)

Tuer, Adam; Tokarz, Danielle; Prent, Nicole; Cisek, Richard; Alami, Jennifer; Dumont, Daniel J.; Bakueva, Ludmila; Rowlands, John; Barzda, Virginijus

2010-03-01

Imaging hematoxylin-and-eosin-stained cancerous histological sections with multicontrast nonlinear excitation fluorescence, second- and third-harmonic generation (THG) microscopy reveals cellular structures with extremely high image contrast. Absorption and fluorescence spectroscopy together with second hyperpolarizability measurements of the dyes shows that strong THG appears due to neutral hemalum aggregation and is subsequently enhanced by interaction with eosin. Additionally, fluorescence lifetime imaging microscopy reveals eosin fluorescence quenching by hemalums, showing better suitability of only eosin staining for fluorescence microscopy. Multicontrast nonlinear microscopy has the potential to differentiate between cancerous and healthy tissue at a single cell level.

Lack of clinical utility of urine gram stain for suspected urinary tract infection in pediatric patients.

Science.gov (United States)

Cantey, Joseph B; Gaviria-Agudelo, Claudia; McElvania TeKippe, Erin; Doern, Christopher D

2015-04-01

Urinary tract infection (UTI) is one of the most common infections in children. Urine culture remains the gold standard for diagnosis, but the utility of urine Gram stain relative to urinalysis (UA) is unclear. We reviewed 312 pediatric patients with suspected UTI who had urine culture, UA, and urine Gram stain performed from a single urine specimen. UA was considered positive if ≥10 leukocytes per oil immersion field were seen or if either nitrates or leukocyte esterase testing was positive. Urine Gram stain was considered positive if any organisms were seen. Sensitivity, specificity, and positive and negative predictive values were calculated using urine culture as the gold standard. Thirty-seven (12%) patients had a culture-proven UTI. Compared to urine Gram stain, UA had equal sensitivity (97.3% versus 97.5%) and higher specificity (85% versus 74%). Empirical therapy was prescribed before the Gram stain result was known in 40 (49%) patients and after in 42 (51%) patients. The antibiotics chosen did not differ between the two groups (P=0.81), nor did they differ for patients with Gram-negative rods on urine Gram stain compared to those with Gram-positive cocci (P=0.67). From these data, we conclude that UA has excellent negative predictive value that is not enhanced by urine Gram stain and that antibiotic selection did not vary based on the urine Gram stain result. In conclusion, the clinical utility of urine Gram stain does not warrant the time or cost it requires. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Lectins stain cells differentially in the coral, Montipora capitata

Science.gov (United States)

Work, Thierry M.; Farah, Yael

2014-01-01

A limitation in our understanding of coral disease pathology and cellular pathogenesis is a lack of reagents to characterize coral cells. We evaluated the utility of plant lectins to stain tissues of a dominant coral, Montipora capitata, from Hawaii. Of 22 lectins evaluated, nine of these stained structures in the upper or basal body wall of corals. Specific structures revealed by lectins that were not considered distinct or evident on routine hematoxylin and eosin sections of coral tissues included apical and basal granules in gastrodermis and epidermis, cnidoglandular tract and actinopharynx cell surface membranes, capsules of mature holotrichous isorhizas, and perivitelline and periseminal cells. Plant lectins could prove useful to further our understanding of coral physiology, anatomy, cell biology, and disease pathogenesis.

Acridine orange staining and radiometric detection of microorganisms in blood cultures

International Nuclear Information System (INIS)

Burdash, N.M.; Manos, J.P.; Bannister, E.R.; Welborn, A.L.

1983-01-01

To determine whether acridine orange (AO) staining of blood cultures could be used as a substitute for blind subculture when used in conjunction with the BACTEC system (Johnston Laboratories, Inc., Towson, Md.), the two methods were compared on all BACTEC-negative specimens. Since blind subcultures were routinely performed in our laboratory on days 2 and 6 of incubation, AO staining was also performed on these days. Cultures which were BACTEC positive on day 1 of incubation were not included in the study. Of the 2,395 bottles tested after 2 days of incubation, 106 were subculture positive. Of these, 96 (90.6%) were also AO positive and BACTEC positive, 3 (2.8%) were AO positive and BACTEC negative, and 7 (6.6%) were AO negative and BACTEC positive. Of the 3,487 bottles tested on day 6 of incubation, 14 were subculture positive; 7 (50%) of these were AO positive and BACTEC positive, and seven were AO positive and BACTEC negative. Of the total of 10 culture-positive bottles missed by BACTEC, all were positive, and all 10 companion aerobic bottles were BACTEC positive. In both phases of the experiment, there was a total of only four false-positive AO stains. As a result of this investigation, we have substituted AO staining for blind subculturing of BACTEC-negative bottles

Evaluation of Staining-Dependent Colour Changes in Resin Composites Using Principal Component Analysis.

Science.gov (United States)

Manojlovic, D; Lenhardt, L; Milićević, B; Antonov, M; Miletic, V; Dramićanin, M D

2015-10-09

Colour changes in Gradia Direct™ composite after immersion in tea, coffee, red wine, Coca-Cola, Colgate mouthwash, and distilled water were evaluated using principal component analysis (PCA) and the CIELAB colour coordinates. The reflection spectra of the composites were used as input data for the PCA. The output data (scores and loadings) provided information about the magnitude and origin of the surface reflection changes after exposure to the staining solutions. The reflection spectra of the stained samples generally exhibited lower reflection in the blue spectral range, which was manifested in the lower content of the blue shade for the samples. Both analyses demonstrated the high staining abilities of tea, coffee, and red wine, which produced total colour changes of 4.31, 6.61, and 6.22, respectively, according to the CIELAB analysis. PCA revealed subtle changes in the reflection spectra of composites immersed in Coca-Cola, demonstrating Coca-Cola's ability to stain the composite to a small degree.

The use of point load test for Dubai weak calcareous sandstones

Directory of Open Access Journals (Sweden)

Amr Farouk Elhakim

2015-08-01

Full Text Available Intact rock is typically described according to its uniaxial compressive strength (UCS. The UCS is needed in the design of geotechnical engineering problems including stability of rock slopes and design of shallow and deep foundations resting on and/or in rocks. Accordingly, a correct measurement/evaluation of the UCS is essential to a safe and economic design. Typically, the UCS is measured using the unconfined compression tests performed on cylindrical intact specimens with a minimum length to width ratio of 2. In several cases, especially for weak and very weak rocks, it is not possible to extract intact specimens with the needed minimum dimensions. Thus, alternative tests (e.g. point load test, Schmidt hammer are used to measure rock strength. The UCS is computed based on the results of these tests through empirical correlations. The literature includes a plethora of these correlations that vary widely in estimating rock strength. Thus, it is paramount to validate these correlations to check their suitability for estimating rock strength for a specific location and geology. A review of the available correlations used to estimate the UCS from the point load test results is performed and summarized herein. Results of UCS, point load strength index and Young's modulus are gathered for calcareous sandstone specimens extracted from the Dubai area. A correlation for estimating the UCS from the point load strength index is proposed. Furthermore, the Young's modulus is correlated to the UCS.

Laser beam diameter for port wine stain treatment

NARCIS (Netherlands)

Keijzer, M.; Pickering, J. W.; van Gemert, M. J.

1991-01-01

Optimal port wine stain treatment requires the selective absorption of light by the ectatic blood vessels. We investigated whether deeper blood vessels can be coagulated, without damaging other cutaneous structures, by varying the laser beam diameter. The penetration of the light was simulated with

Cell wall staining with Trypan blue enables quantitative analysis of morphological changes in yeast cells.

Science.gov (United States)

Liesche, Johannes; Marek, Magdalena; Günther-Pomorski, Thomas

2015-01-01

Yeast cells are protected by a cell wall that plays an important role in the exchange of substances with the environment. The cell wall structure is dynamic and can adapt to different physiological states or environmental conditions. For the investigation of morphological changes, selective staining with fluorescent dyes is a valuable tool. Furthermore, cell wall staining is used to facilitate sub-cellular localization experiments with fluorescently-labeled proteins and the detection of yeast cells in non-fungal host tissues. Here, we report staining of Saccharomyces cerevisiae cell wall with Trypan Blue, which emits strong red fluorescence upon binding to chitin and yeast glucan; thereby, it facilitates cell wall analysis by confocal and super-resolution microscopy. The staining pattern of Trypan Blue was similar to that of the widely used UV-excitable, blue fluorescent cell wall stain Calcofluor White. Trypan Blue staining facilitated quantification of cell size and cell wall volume when utilizing the optical sectioning capacity of a confocal microscope. This enabled the quantification of morphological changes during growth under anaerobic conditions and in the presence of chemicals, demonstrating the potential of this approach for morphological investigations or screening assays.

Cell wall staining with Trypan Blue enables quantitative analysis of morphological changes in yeast cells

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Johannes eLiesche

2015-02-01

Full Text Available Yeast cells are protected by a cell wall that plays an important role in the exchange of substances with the environment. The cell wall structure is dynamic and can adapt to different physiological states or environmental conditions. For the investigation of morphological changes, selective staining with fluorescent dyes is a valuable tool. Furthermore, cell wall staining is used to facilitate sub-cellular localization experiments with fluorescently-labeled proteins and the detection of yeast cells in non-fungal host tissues. Here, we report staining of Saccharomyces cerevisiae cell wall with Trypan Blue, which emits strong red fluorescence upon binding to chitin and yeast glucan; thereby, it facilitates cell wall analysis by confocal and super-resolution microscopy. The staining pattern of Trypan Blue was similar to that of the widely used UV-excitable, blue fluorescent cell wall stain Calcofluor White. Trypan Blue staining facilitated quantification of cell size and cell wall volume when utilizing the optical sectioning capacity of a confocal microscope. This enabled the quantification of morphological changes during growth under anaerobic conditions and in the presence of chemicals, demonstrating the potential of this approach for morphological investigations or screening assays.

Hematoxylin and eosin stain shows a high sensitivity but sub-optimal specificity in demonstrating iron pigment in liver biopsies.

Science.gov (United States)

Alwahaibi, Nasar Yousuf; Alkhatri, Azza Sarhan; Kumar, Johanes Selva

2015-01-01

Perls' stain is routinely used to demonstrate iron in liver biopsies. We tested the hypothesis that it may be unnecessary in cases, where no iron or another similar pigment was seen on the routine hematoxylin and eosin (H and E) stained section. The aim of this study was to evaluate the efficiency of H and E stain in demonstrating iron in liver biopsies as well as to determine the possibility of replacing Perls' stain with H and E stain. Two hundred pairs of slides of liver biopsies were taken from the archival files of the Department of Pathology from 2006 to 2011. Perls' and H and E slides were independently reviewed for the presence of iron. Hundred and one cases showed the presence of iron using H and E stain. 84 of 86 cases showed positive iron using both Perls' and H and E stains. Seventeen cases were positive using H and E stain but negative with Perls'. Only two cases did not show the presence of iron using H and E stain. Ninety-seven cases were negative using both Perls' and H and E stains. H and E stain showed a sensitivity, specificity, accuracy, positive predictive valve, and negative predictive value of 97.67%, 85.08%, 90.5%, 83.16%, and 97.98%, respectively. We demonstrate that the H and E stain is a sensitive method to detect iron pigment in liver biopsies, particularly when present in large quantities. A negative H and E stain might obviate the need for extra Perls' staining, thus saving costs and shortening report turn-around times.

Short-Term Responses of Soil Respiration and C-Cycle Enzyme Activities to Additions of Biochar and Urea in a Calcareous Soil.

Directory of Open Access Journals (Sweden)

Dali Song

Full Text Available Biochar (BC addition to soil is a proposed strategy to enhance soil fertility and crop productivity. However, there is limited knowledge regarding responses of soil respiration and C-cycle enzyme activities to BC and nitrogen (N additions in a calcareous soil. A 56-day incubation experiment was conducted to investigate the combined effects of BC addition rates (0, 0.5, 1.0, 2.5 and 5.0% by mass and urea (U application on soil nutrients, soil respiration and C-cycle enzyme activities in a calcareous soil in the North China Plain. Our results showed soil pH values in both U-only and U plus BC treatments significantly decreased within the first 14 days and then stabilized, and CO2emission rate in all U plus BC soils decreased exponentially, while there was no significant difference in the contents of soil total organic carbon (TOC, dissolved organic carbon (DOC, total nitrogen (TN, and C/N ratio in each treatment over time. At each incubation time, soil pH, electrical conductivity (EC, TOC, TN, C/N ratio, DOC and cumulative CO2 emission significantly increased with increasing BC addition rate, while soil potential activities of the four hydrolytic enzymes increased first and then decreased with increasing BC addition rate, with the largest values in the U + 1.0%BC treatment. However, phenol oxidase activity in all U plus BC soils showed a decreasing trend with the increase of BC addition rate. Our results suggest that U plus BC application at a rate of 1% promotes increases in hydrolytic enzymes, does not highly increase C/N and C mineralization, and can improve in soil fertility.

Short-Term Responses of Soil Respiration and C-Cycle Enzyme Activities to Additions of Biochar and Urea in a Calcareous Soil

Science.gov (United States)

Song, Dali; Xi, Xiangyin; Huang, Shaomin; Liang, Guoqing; Sun, Jingwen; Zhou, Wei; Wang, Xiubin

2016-01-01

Biochar (BC) addition to soil is a proposed strategy to enhance soil fertility and crop productivity. However, there is limited knowledge regarding responses of soil respiration and C-cycle enzyme activities to BC and nitrogen (N) additions in a calcareous soil. A 56-day incubation experiment was conducted to investigate the combined effects of BC addition rates (0, 0.5, 1.0, 2.5 and 5.0% by mass) and urea (U) application on soil nutrients, soil respiration and C-cycle enzyme activities in a calcareous soil in the North China Plain. Our results showed soil pH values in both U-only and U plus BC treatments significantly decreased within the first 14 days and then stabilized, and CO2emission rate in all U plus BC soils decreased exponentially, while there was no significant difference in the contents of soil total organic carbon (TOC), dissolved organic carbon (DOC), total nitrogen (TN), and C/N ratio in each treatment over time. At each incubation time, soil pH, electrical conductivity (EC), TOC, TN, C/N ratio, DOC and cumulative CO2 emission significantly increased with increasing BC addition rate, while soil potential activities of the four hydrolytic enzymes increased first and then decreased with increasing BC addition rate, with the largest values in the U + 1.0%BC treatment. However, phenol oxidase activity in all U plus BC soils showed a decreasing trend with the increase of BC addition rate. Our results suggest that U plus BC application at a rate of 1% promotes increases in hydrolytic enzymes, does not highly increase C/N and C mineralization, and can improve in soil fertility. PMID:27589265

Flow cytometric detection of micronuclei by combined staining of DNA and membranes

International Nuclear Information System (INIS)

Wessels, J.M.; Nuesse, M.

1995-01-01

A new staining method is presented for flow cytometric measurement of micronuclei (MN) in cell cultures and human lymphocytes using membrane-specific fluorescent dyes in addition to DNA staining. Several combinations of fluorescent membrane and DNA dyes were studied for a better discrimination of MN from debris in a suspension of nuclei and micronuclei. For staining of membranes, the lipophilic dyes 2-hydroxyethyl-7,12,17-tris(methoxyethyl)porphycene (HEPn) and 1,6-diphenyl-1,3,5-hexatriene (DPH) were used in combination with ethidium bromide (EB), proflavine (PF), and Hoechst 33258 (HO). Due to their spectral properties, HO or EB combined with HEPn were not as suitable for the discrimination of MN from debris as was HEPn in combination with PF. With HEPn in combination with PF, however, additional noise was found at low fluorescence intensities, probably due to free fluorescent dye molecules in the solution. The optimal simultaneous staining of membranes and DNA was obtained using a combination of DPH and EB. The induction of MN in Chinese hamster and mouse NIH-3T3 cells by UV-B illumination was studied with this new staining technique. UV-B illumination (280-360 nm) induced MN in both cell lines. Chinese hamster cells were found to be more sensitive to these wavelengths. Illumination with wavelengths above 360 nm did not induce MN in either cell line. The results obtained from human lymphocytes using the combination of EB or DPH were comparable to the results obtained with the combination of EB and HO. 23 refs., 7 figs

Staining of E-selectin ligands on paraffin-embedded sections of tumor tissue.

Science.gov (United States)

Carrascal, Mylène A; Talina, Catarina; Borralho, Paula; Gonçalo Mineiro, A; Henriques, Ana Raquel; Pen, Cláudia; Martins, Manuela; Braga, Sofia; Sackstein, Robert; Videira, Paula A

2018-05-02

The E-selectin ligands expressed by cancer cells mediate adhesion of circulating cancer cells to endothelial cells, as well as within tissue microenvironments important for tumor progression and metastasis. The identification of E-selectin ligands within cancer tissue could yield new biomarkers for patient stratification and aid in identifying novel therapeutic targets. The determinants of selectin ligands consist of sialylated tetrasaccharides, the sialyl Lewis X and A (sLe X and sLe A ), displayed on protein or lipid scaffolds. Standardized procedures for immunohistochemistry make use of the antibodies against sLe X and/or sLe A . However, antibody binding does not define E-selectin binding activity. In this study, we developed an immunohistochemical staining technique, using E-selectin-human Ig Fc chimera (E-Ig) to characterize the expression and localization of E-selectin binding sites on paraffin-embedded sections of different cancer tissue. E-Ig successfully stained cancer cells with high specificity. The E-Ig staining show high reactivity scores in colon and lung adenocarcinoma and moderate reactivity in triple negative breast cancer. Compared with reactivity of antibody against sLe X/A , the E-Ig staining presented higher specificity to cancer tissue with better defined borders and less background. The E-Ig staining technique allows the qualitative and semi-quantitative analysis of E-selectin binding activity on cancer cells. The development of accurate techniques for detection of selectin ligands may contribute to better diagnostic and better understanding of the molecular basis of tumor progression and metastasis.

Noninvasive monitoring of moisture uptake in Ca(NO3)2 -polluted calcareous stones by 1H-NMR relaxometry.

Science.gov (United States)

Casieri, Cinzia; Terenzi, Camilla; De Luca, Francesco

2015-01-01

NMR transverse relaxation time (T(2)) distribution of (1)H nuclei of water has been used to monitor the moisture condensation kinetics in Ca(NO(3))(2)  · (4)H(2)O-polluted Lecce stone, a calcareous stone with highly regular porous structure often utilized as basic material in Baroque buildings. Polluted samples have been exposed to water vapor adsorption at controlled relative humidity to mimic environmental conditions. In presence of pollutants, the T(2) distributions of water in stone exhibit a range of relaxation time values and amplitudes not observed in the unpolluted case. These characteristics could be exploited for in situ noninvasive detection of salt pollution in Lecce stone or as damage precursors in architectural buildings of cultural heritage interest. Copyright © 2014 John Wiley & Sons, Ltd.

Evaluation of biosafe alternatives as xylene substitutes in hematoxylin and eosin staining procedure: A comparative pilot study

Science.gov (United States)

Sravya, Taneeru; Rao, Guttikonda Venkateswara; Kumari, Masabattula Geetha; Sagar, Yerraguntla Vidya; Sivaranjani, Yeluri; Sudheerkanth, Kondamarri

2018-01-01

Background: Xylene is synthetic hydrocarbon produced from coal tar known for its wide usage as universal solvent which has many hazardous effects. The aim of this study is to compare the efficacy of xylene-free hematoxylin and eosin (H and E) sections with conventional H and E sections. Materials and Methods: The study included ninety paraffin-embedded tissue blocks. Of these, sixty blocks were processed with sesame oil (xylene alternative) and thirty blocks with xylene. The study sample was divided into three groups. Sixty sections which are taken from sesame oil-processed blocks were stained with xylene-free H and E staining method. In xylene-free staining method, 95% diluted lemon water (Group A) and 1.7% dish washing solution (DWS, Group B) were used as deparaffinizing agents whereas the remaining 30 sections were processed with xylene and stained with conventional H and E staining method (Group C). Slides were scored for the following parameters: (i) nuclear staining (adequate = score 1, inadequate = score 0), (ii) cytoplasmic staining (adequate = score 1, inadequate = score 0), (iii) uniformity (present = score 1, absent = score 0), (iv) clarity (present = score 1, absent = score 0) and (v) intensity (present = score 1, absent = score 0). Score ≤2 was considered inadequate for diagnosis while scores 3–5 were considered adequate for diagnosis. Results: Adequate nuclear staining was noted in 90% of sections of Group A and 100% each in Group B and Group C (P 0.05); adequate uniformity of staining in 53.3% of sections of Group A, 70% in Group B and 83.3% in Group C (P 0.05) and adequate intensity of staining in 76.7% sections of Group A, 93.3% in Group B and 100% in Group C (P < 0.05). Group C sections stained adequate for diagnosis (93.3%) followed by Group B (88.7%) and Group A (78%; P < 0.05). Conclusion: Tissues processed with sesame oil and stained using 1.7% DWS were found to be effective alternative to xylene.

Histological staining methods preparatory to laser capture microdissection significantly affect the integrity of the cellular RNA.

Science.gov (United States)

Wang, Hongyang; Owens, James D; Shih, Joanna H; Li, Ming-Chung; Bonner, Robert F; Mushinski, J Frederic

2006-04-27

Gene expression profiling by microarray analysis of cells enriched by laser capture microdissection (LCM) faces several technical challenges. Frozen sections yield higher quality RNA than paraffin-imbedded sections, but even with frozen sections, the staining methods used for histological identification of cells of interest could still damage the mRNA in the cells. To study the contribution of staining methods to degradation of results from gene expression profiling of LCM samples, we subjected pellets of the mouse plasma cell tumor cell line TEPC 1165 to direct RNA extraction and to parallel frozen sectioning for LCM and subsequent RNA extraction. We used microarray hybridization analysis to compare gene expression profiles of RNA from cell pellets with gene expression profiles of RNA from frozen sections that had been stained with hematoxylin and eosin (H&E), Nissl Stain (NS), and for immunofluorescence (IF) as well as with the plasma cell-revealing methyl green pyronin (MGP) stain. All RNAs were amplified with two rounds of T7-based in vitro transcription and analyzed by two-color expression analysis on 10-K cDNA microarrays. The MGP-stained samples showed the least introduction of mRNA loss, followed by H&E and immunofluorescence. Nissl staining was significantly more detrimental to gene expression profiles, presumably owing to an aqueous step in which RNA may have been damaged by endogenous or exogenous RNAases. RNA damage can occur during the staining steps preparatory to laser capture microdissection, with the consequence of loss of representation of certain genes in microarray hybridization analysis. Inclusion of RNAase inhibitor in aqueous staining solutions appears to be important in protecting RNA from loss of gene transcripts.

ENAMEL SUSCEPTIBILITY TO RED WINE STAINING AFTER 35% HYDROGEN PEROXIDE BLEACHING

Science.gov (United States)

Berger, Sandrine Bittencourt; Coelho, Alessandra Sanchez; Oliveira, Valéria Aparecida Pessatti; Cavalli, Vanessa; Giannini, Marcelo

2008-01-01

Concern has been expressed regarding the staining of enamel surface by different beverages after bleaching. This study investigated the influence of 35% hydrogen peroxide bleaching agents on enamel surface stained with wine after whitening treatments. Flat and polished bovine enamel surfaces were submitted to two commercially available 35% hydrogen peroxide bleaching agents or kept in 100% humidity, as a control group (n = 10). Specimens of all groups were immersed in red wine for 48 h at 37°C, immediately, 24 h or 1 week after treatments. All specimens were ground into powder and prepared for the spectrophotometric analysis. Data were subjected to two-way analysis of variance and Fisher's PLSD test at 5% significance level. The amount of wine pigments uptake by enamel submitted to bleaching treatments was statistically higher than that of control group, independently of the evaluation time. Results suggested that wine staining susceptibility was increased by bleaching treatments. PMID:19089218

Enamel susceptibility to red wine staining after 35% hydrogen peroxide bleaching

Directory of Open Access Journals (Sweden)

Sandrine Bittencourt Berger

2008-06-01

Full Text Available Concern has been expressed regarding the staining of enamel surface by different beverages after bleaching. This study investigated the influence of 35% hydrogen peroxide bleaching agents on enamel surface stained with wine after whitening treatments. Flat and polished bovine enamel surfaces were submitted to two commercially available 35% hydrogen peroxide bleaching agents or kept in 100% humidity, as a control group (n = 10. Specimens of all groups were immersed in red wine for 48 h at 37°C, immediately, 24 h or 1 week after treatments. All specimens were ground into powder and prepared for the spectrophotometric analysis. Data were subjected to two-way analysis of variance and Fisher's PLSD test at 5% significance level. The amount of wine pigments uptake by enamel submitted to bleaching treatments was statistically higher than that of control group, independently of the evaluation time. Results suggested that wine staining susceptibility was increased by bleaching treatments.

An Evaluation on the Importance of Phosphotungstic Acid Haematoxyiin (PTAH Staining in Differential Diagnosis of Salivary Gland Neoplasms

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E Yazdi

2003-02-01

Full Text Available The differential diagnosis between pleomorphic adenoma, the most common salivary gland neoplasm, microscopically, and two other common salivary gland neoplasms, meaning adenoid cystic carcinoma and mucoepidermoid carcinoma, is difficut.The purpose of this study was to determine the differences between pleomorphic adenoma, adenoid cystic carcinoma and mucoepidermoid carcinoma regarding the staining intensity with PTAH and H&E and also to investigate the relationship between staining intensity with PTAH and malignancy grade in mucoepidermoid carcinoma. 72 paraffin embeded samples including 24 pleomorphic adenoma, 24 adenoid cystic carcinoma and 24 mucoepidermoid carcinoma were selected and stained with PTAH. The staining intensity in total, in nucleus and cytoplasm of tumoral cells were evaluated and compared with H&E staining, statistically. The results were analyzed by Kruskal-Wallis, and Wilcoxon signed ranks tests (P<0.05.The logistic model was presented to predict the degree of malignancies through the assessment of nucleus and cytoplasm staining intensity in tumoral cells, and the patient's age. In this study, a statistically significant relationship was observed between staining intensity by PTAH and H& E in nucleus of tumoral cells in pleomorphic adenoma. Moreover, statistically significant relation between staining intensity by PTAH and H & E in cytoplasm of tumoral cells in adenoid cystic carcinoma was found. But there was no relation in other cases. On the other hand, a statistically significant relation between intensity of staining in total, in nucleus and cytoplasm of tumoral cells and the type of tumor was found. No relation was obtained between malignancy grade of mucoepidermoid carcinoma and staining intensity in total, in nucleus and cytoplasm of tumoral cells. The presented logistic model indicated a direct relation between tumor malignancy with patient's age and staining intensity in nucleus of tumoral cells, but a

A comparision of modified and standard papanicolaou staining ...

African Journals Online (AJOL)

Objective: To compare modified and standard Papanicolaou (Pap) staining methods in the assessment of the cervical smears. Design: A descriptive cross sectional study. setting: Kenyatta National Hospital. Subjects: One hundred and sixty two women who were eligible for a pap smear and met the inclusion criteria.

Detergent-compatible proteases: microbial production, properties, and stain removal analysis.

Science.gov (United States)

Niyonzima, Francois Niyongabo; More, Sunil

2015-01-01

Proteases are one of the most important commercial enzymes used in various industrial domains such as detergent and leather industries. The alkaline proteases as well as other detergent-compatible enzymes such as lipases and amylases serve now as the key components in detergent formulations. They break down various stains during fabric washing. The search for detergent-compatible proteases with better properties is a continuous exercise. The current trend is to use detergent-compatible proteases that are stable over a wide temperature range. Although the proteases showing stability at elevated pH have the capacity to be used in detergent formulations, their usage can be significant if they are also stable and compatible with detergent and detergent ingredients, and also able to remove protein stains. Despite the existence of some reviews on alkaline proteases, there is no specification for the use of alkaline proteases as detergent additives. The present review describes the detergent-compatible proteases tested as detergent additives. An overview was provided for screening, optimization, purification, and properties of detergent compatible proteases, with an emphasis on the stability and compatibility of the alkaline proteases with the detergent and detergent compounds, as well as stain removal examination methods.

Matrix Remodeling During Intervertebral Disc Growth and Degeneration Detected by Multichromatic FAST Staining

Science.gov (United States)

Leung, Victor Y.L.; Chan, Wilson C.W.; Hung, Siu-Chun; Cheung, Kenneth M.C.; Chan, Danny

2009-01-01

Various imaging techniques have been used to assess degeneration of the intervertebral disc, including many histological methods, but cartilage-oriented histological stains do not clearly show the comparatively complex structures of the disc. In addition, there is no integrated method to assess efficiently both the compartmental organization and matrix composition in disc samples. In this study, a novel histological method, termed FAST staining, has been developed to investigate disc growth and degeneration by sequential staining with fast green, Alcian blue, Safranin-O, and tartrazine to generate multichromatic histological profiles (FAST profiles). This identifies the major compartments of the vertebra-disc region, including the cartilaginous endplate and multiple zones of the annulus fibrosus, by specific FAST profile patterns. A disc degeneration model in rabbit established using a previously described puncture method showed gradual but profound alteration of the FAST profile during disc degeneration, supporting continual alteration of glycosaminoglycan. Changes of the FAST profile pattern in the nucleus pulposus and annulus fibrosus of the postnatal mouse spine suggested matrix remodeling activity during the growth of intervertebral discs. In summary, we developed an effective staining method capable of defining intervertebral disc compartments in detail and showing matrix remodeling events within the disc. The FAST staining method may be used to develop a histopathological grading system to evaluate disc degeneration or malformation. (J Histochem Cytochem 57:249–256, 2009) PMID:19001641

[Comparison of the quick Gram stain method to the B&M modified and favor methods].

Science.gov (United States)

Osawa, Kayo; Kataoka, Nobumasa; Maruo, Toshio

2011-01-01

The Gram stain is an established method for bacterial identification, but the time needed to carry out this stain is 2-3 min. We attempted to shorten this time and stained a total of 70 clinical specimens isolated from using the Bartholomew & Mittwer (B&M) modified or Favor methods with a 3 s duration for washing and staining steps. Results were plotted and analyzed using a Hue Saturation Intensity (HSI) model. The range based on a plot of the two methods with the HSI model was presented as a reference interval. Our results indicated that 100% (35/35) of strains were Gram positive and 97.1% (34/35) were Gram negative for the quick B&M modified method. In the quick Favor method, 80.0% (28/35) were Gram positive and 68.6% (24/35) of strains were Gram negative. We propose that the quick B&M modified method is equivalent to the standard Gram staining method and is superior to the quick Favor method.

Silver-Stained Fibrin Zymography: Separation of Proteases and Activity Detection Using a Single Substrate-Containing Gel.

Science.gov (United States)

Park, Chang-Su; Kang, Dae-Ook; Choi, Nack-Shick

2017-01-01

Silver-stained fibrin zymography for separation of protease bands and activity detection using a single substrate gel was designed. The method takes advantage of the nano-scale sensitivity of both zymography and silver staining. After sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis (PAGE) in a gel containing fibrin (protease substrate), the gel was incubated in enzyme reaction buffer and the zymogram gel was silver-stained. Bands with protease activity were stained with silver in clear areas where the protein substrate had been degraded. The molecular sizes of proteases were accurately determined.

In-office bleaching efficacy on stain removal from CAD/CAM and direct resin composite materials.

Science.gov (United States)

Alharbi, Amal; Ardu, Stefano; Bortolotto, Tissiana; Krejci, Ivo

2018-01-01

To evaluate the efficacy of in-office bleaching on stain removal from stained resin composite and ceramic computer-assisted design/computer-assisted manufacturing (CAD/CAM) blocks and direct resin composites. Forty disk-shaped samples were fabricated from each of nine materials: six CAD/CAM (VITABLOCS Mark II, Paradigm MZ100, Exp Vita Hybrid Ceramic, VITA ENAMIC, Exp Kerr, and LAVA Ultimate) and three direct resin composites (Filtek Supreme, Venus Diamond, and Filtek Silorane). Samples were randomly divided into five groups (n = 8), each stained with a particular staining solution. Using a calibrated spectrophotometer and a black background, L*a*b* values were assessed before and after 120 days of staining. Samples were subjected to in-office bleaching using 40% hydrogen peroxide gel for one hour. At subsequent assessment, color change (ΔE) was calculated as the difference between L*a*b* values. Both ANOVA and the Duncan test were used to identify differences between groups (α = 0.05). Bleaching resulted in significant differences in ΔE values for all materials (P Bleaching efficacy was highly influenced by material composition and staining solution. Residual color values after bleaching for ceramic and hybrid ceramics ranged from -0.49 to 2.35, within the clinically acceptable maximum of 3.3. Values after bleaching for resin-based CAD/CAM ranged from -0.7 to 7.08 while direct resin composites values ranged from -1.47 to 25.13. Coffee left the greatest residual color on all materials. Based on material nature, 40% hydrogen peroxide bleaching can remove staining. The new resin-based CAD/CAM blocks showed promising results in terms of color stability. Bleaching using 40% hydrogen peroxide can be an effective method to remove stains from dental restorations. In this way, restoration replacement as a result of discoloration may no longer be necessary. © 2017 Wiley Periodicals, Inc.

p16/Ki-67 Dual Stain Cytology for Detection of Cervical Precancer in HPV-Positive Women.

Science.gov (United States)

Wentzensen, Nicolas; Fetterman, Barbara; Castle, Philip E; Schiffman, Mark; Wood, Shannon N; Stiemerling, Eric; Tokugawa, Diane; Bodelon, Clara; Poitras, Nancy; Lorey, Thomas; Kinney, Walter

2015-12-01

Human papillomavirus (HPV)-based cervical cancer screening requires triage markers to decide who should be referred to colposcopy. p16/Ki-67 dual stain cytology has been proposed as a biomarker for cervical precancers. We evaluated the dual stain in a large population of HPV-positive women. One thousand five hundred and nine HPV-positive women screened with HPV/cytology cotesting at Kaiser Permanente California were enrolled into a prospective observational study in 2012. Dual stain cytology was performed on residual Surepath material, and slides were evaluated for dual stain-positive cells. Disease endpoints were ascertained from the clinical database at KPNC. We evaluated the clinical performance of the assay among all HPV-positive women and among HPV-positive, cytology-negative women. We used internal benchmarks for clinical management to evaluate the clinical relevance of the dual stain assay. We evaluated sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) of the dual stain compared with Pap cytology. All statistical tests were two-sided. The dual stain had lower positivity (45.9%) compared with cytology at an ASC-US threshold (53.4%). For detection of CIN2+, the dual stain had similar sensitivity (83.4% vs 76.6%, P = .1), and statistically higher specificity (58.9% vs 49.6%, P < .001), PPV (21.0% vs 16.6%, P < .001), and NPV (96.4% vs 94.2%, P = .01) compared with cytology. Similar patterns were observed for CIN3+. Women with a positive test had high enough risk for referral to colposcopy, while the risk for women with negative tests was below a one-year return threshold based on current US management guidelines. Dual stain cytology showed good risk stratification for all HPV-positive women and for HPV-positive women with normal cytology. Additional follow-up is needed to determine how long dual stain negative women remain at low risk of precancer. Published by Oxford University Press 2015. This work is written by (a

Red alder kitchen cabinets—How does application of commercial stains influence customer choice?

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David Nicholls; Joseph. Roos

2007-01-01

A better understanding of consumer reaction and preferences for red alder (Alnus rubra Bong.) secondary products will help Alaska producers in entering new markets. In this study, red alder kitchen cabinets were commercially stained to six different levels and displayed at home shows in Portland, Oregon, and Anchorage, Alaska. The stains simulated...

Staining pattern classification of antinuclear autoantibodies based on block segmentation in indirect immunofluorescence images.

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Jiaqian Li

Full Text Available Indirect immunofluorescence based on HEp-2 cell substrate is the most commonly used staining method for antinuclear autoantibodies associated with different types of autoimmune pathologies. The aim of this paper is to design an automatic system to identify the staining patterns based on block segmentation compared to the cell segmentation most used in previous research. Various feature descriptors and classifiers are tested and compared in the classification of the staining pattern of blocks and it is found that the technique of the combination of the local binary pattern and the k-nearest neighbor algorithm achieve the best performance. Relying on the results of block pattern classification, experiments on the whole images show that classifier fusion rules are able to identify the staining patterns of the whole well (specimen image with a total accuracy of about 94.62%.

Black stain and dental caries in Filipino schoolchildren.

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Heinrich-Weltzien, R.; Monse, B.; Palenstein Helderman, W.H. van

2009-01-01

Black stain is defined as dark pigmented exogenous substance in lines or dots parallel to the gingival margin and firmly adherent to the enamel at the cervical third of the tooth crowns in the primary and permanent dentition. OBJECTIVES: This study was conducted to assess the prevalence of black

A new fluorescent pH probe for imaging lysosomes in living cells.

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Lv, Hong-Shui; Huang, Shu-Ya; Xu, Yu; Dai, Xi; Miao, Jun-Ying; Zhao, Bao-Xiang

2014-01-15

A new rhodamine B-based pH fluorescent probe has been synthesized and characterized. The probe responds to acidic pH with short response time, high selectivity and sensitivity, and exhibits a more than 20-fold increase in fluorescence intensity within the pH range of 7.5-4.1 with the pKa value of 5.72, which is valuable to study acidic organelles in living cells. Also, it has been successfully applied to HeLa cells, for its low cytotoxicity, brilliant photostability, good membrane permeability and no 'alkalizing effect' on lysosomes. The results demonstrate that this probe is a lysosome-specific probe, which can selectively stain lysosomes and monitor lysosomal pH changes in living cells. Copyright © 2013 Elsevier Ltd. All rights reserved.

Inorganic Phosphorus Fractions and Their Relationships with Soil Characteristics of Selected Calcareous Soils of Fars Province

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abolfazl azadi

2017-01-01

Full Text Available Introduction: Phosphorus (P is the second limiting nutrient in soils for crop production after nitrogen. Phosphorus is an essential nutrient in crop production. Determination of forms of soil phosphorus is important in the evaluation of soil phosphorus status. Various sequential P fractionation procedures have been used to identify the forms of P and to determine the distribution of P fractions in soils (Chang and Jackson, 1957, Williams et al., 1967; Hedley et al., 1982, but are not particularly sensitive to the various P compounds that may exist in calcareous soils. A Sequential fractionation scheme has been suggested for calcareous soils by which three types of Ca-phosphates i.e. dicalcium phosphate, octacalcium phosphate, and apatite could be identified (Jiang and Gu, 1989. These types of Ca-phosphates were described as Ca2-P (NaHCO3-extractable P, Ca8-P (NH4AC-extractable P and Ca10-P (apatite type, respectively. In this study, the amount and distribution of soil inorganic phosphorus fractions were examined in 49 soil samples of Fars province according to the method described by Jiang and Gu (1989. Materials and Methods: Based on the previous soil survey maps of Fars province and According to Soil Moisture and Temperature Regime Map of Iran (Banaei, 1998, three regions (abadeh, eghlid and noorabad with different Soil Moisture and Temperature Regimes were selected. The soils were comprised Aridic, xeric, and ustic moisture regimes along with mesic, and hyperthemic temperature regimes. 49 representative samples were selected. The soil samples were air-dried and were passed through a 2-mm sieve before analysis. Particle size distribution was determined by hydrometer method (Gee and Bauder 1996. Also, Cation exchange capacity (CEC; Sumner and Miller 1996, calcium carbonate equivalent (Loeppert and Suarez 1996, organic matter content (Nelson and Sommers 1996, and pH by saturated paste method (Thomas 1996 were determined . Inorganic phosphorus

Histological staining methods preparatory to laser capture microdissection significantly affect the integrity of the cellular RNA

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Li Ming-Chung

2006-04-01

Full Text Available Abstract Background Gene expression profiling by microarray analysis of cells enriched by laser capture microdissection (LCM faces several technical challenges. Frozen sections yield higher quality RNA than paraffin-imbedded sections, but even with frozen sections, the staining methods used for histological identification of cells of interest could still damage the mRNA in the cells. To study the contribution of staining methods to degradation of results from gene expression profiling of LCM samples, we subjected pellets of the mouse plasma cell tumor cell line TEPC 1165 to direct RNA extraction and to parallel frozen sectioning for LCM and subsequent RNA extraction. We used microarray hybridization analysis to compare gene expression profiles of RNA from cell pellets with gene expression profiles of RNA from frozen sections that had been stained with hematoxylin and eosin (H&E, Nissl Stain (NS, and for immunofluorescence (IF as well as with the plasma cell-revealing methyl green pyronin (MGP stain. All RNAs were amplified with two rounds of T7-based in vitro transcription and analyzed by two-color expression analysis on 10-K cDNA microarrays. Results The MGP-stained samples showed the least introduction of mRNA loss, followed by H&E and immunofluorescence. Nissl staining was significantly more detrimental to gene expression profiles, presumably owing to an aqueous step in which RNA may have been damaged by endogenous or exogenous RNAases. Conclusion RNA damage can occur during the staining steps preparatory to laser capture microdissection, with the consequence of loss of representation of certain genes in microarray hybridization analysis. Inclusion of RNAase inhibitor in aqueous staining solutions appears to be important in protecting RNA from loss of gene transcripts.

Blockface histology with optical coherence tomography: a comparison with Nissl staining.

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Magnain, Caroline; Augustinack, Jean C; Reuter, Martin; Wachinger, Christian; Frosch, Matthew P; Ragan, Timothy; Akkin, Taner; Wedeen, Van J; Boas, David A; Fischl, Bruce

2014-01-01

Spectral domain optical coherence tomography (SD-OCT) is a high resolution imaging technique that generates excellent contrast based on intrinsic optical properties of the tissue, such as neurons and fibers. The SD-OCT data acquisition is performed directly on the tissue block, diminishing the need for cutting, mounting and staining. We utilized SD-OCT to visualize the laminar structure of the isocortex and compared cortical cytoarchitecture with the gold standard Nissl staining, both qualitatively and quantitatively. In histological processing, distortions routinely affect registration to the blockface image and prevent accurate 3D reconstruction of regions of tissue. We compared blockface registration to SD-OCT and Nissl, respectively, and found that SD-OCT-blockface registration was significantly more accurate than Nissl-blockface registration. Two independent observers manually labeled cortical laminae (e.g. III, IV and V) in SD-OCT images and Nissl stained sections. Our results show that OCT images exhibit sufficient contrast in the cortex to reliably differentiate the cortical layers. Furthermore, the modalities were compared with regard to cortical laminar organization and showed good agreement. Taken together, these SD-OCT results suggest that SD-OCT contains information comparable to standard histological stains such as Nissl in terms of distinguishing cortical layers and architectonic areas. Given these data, we propose that SD-OCT can be used to reliably generate 3D reconstructions of multiple cubic centimeters of cortex that can be used to accurately and semi-automatically perform standard histological analyses. © 2013.

New Insights into the in situ Microscopic Visualization and Quantification of Inorganic Polyphosphate Stores by 4’,6-Diamidino-2-Phenylindole (DAPI)-Staining

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Gomes, F.M.; Ramos, I.B.; Wendt, C.; Girard-Dias, W.; De Souza, W.; Machado, E.A.; K. Miranda, E.A.

2013-01-01

Inorganic polyphosphate (PolyP) is a biological polymer that plays important roles in the cell physiology of both prokaryotic and eukaryotic organisms. Among the available methods for PolyP localization and quantification, a 4’,6-diamidino-2-phenylindole(DAPI)-based assay has been used for visualization of PolyP-rich organelles. Due to differences in DAPI permeability to different compartments and/or PolyP retention after fixation, a general protocol for DAPI-PolyP staining has not yet been established. Here, we tested different protocols for DAPI-PolyP detection in a range of samples with different levels of DAPI permeability, including subcellular fractions, free-living cells and cryosections of fixed tissues. Subcellular fractions of PolyP-rich organelles yielded DAPI-PolyP fluorescence, although those with a complex external layer usually required longer incubation times, previous aldehyde fixation and/or detergent permeabilization. DAPI-PolyP was also detected in cryosections of OCT-embedded tissues analyzed by multiphoton microscopy. In addition, a semi-quantitative fluorimetric analysis of DAPI-stained fractions showed PolyP mobilization in a similar fashion to what has been demonstrated with the use of enzyme-based quantitative protocols. Taken together, our results support the use of DAPI for both PolyP visualization and quantification, although specific steps are suggested as a general guideline for DAPI-PolyP staining in biological samples with different degrees of DAPI and PolyP permeability. PMID:24441187

A prospective study of the diagnostic utility of sputum Gram stain in pneumonia.

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Anevlavis, Stavros; Petroglou, Niki; Tzavaras, Athanasios; Maltezos, Efstratios; Pneumatikos, Ioannis; Froudarakis, Marios; Anevlavis, Eleftherios; Bouros, Demosthenes

2009-08-01

Sputum Gram stain and culture have been said to be unreliable indicators of the microbiological diagnosis of bacterial pneumonia. The etiological diagnosis of pneumonia is surrounded by great degree of uncertainty. This uncertainty should be and can be calculated and incorporated in the diagnosis and treatment. To determine the diagnostic accuracy and diagnostic value of sputum Gram stain in etiological diagnosis and initial selection of antimicrobial therapy of bacterial community acquired pneumonia (CAP). DESIGN-METHOD: Prospective study of 1390 patients with CAP admitted January 2002-June 2008, to our institutions. Of the 1390 patients, 178 (12.8%) fulfilled the criteria for inclusion into this study (good-quality sputa and presence of the same microorganism in blood and sputum cultures which was used as gold standard for assessing the diagnostic accuracy and diagnostic value of sputum Gram stain). The sensitivity of sputum Gram stain was 0.82 for Pneumococcal pneumonia, 0.76 for Staphylococcal pneumonia, 0.79 for Haemophilus influenzae pneumonia and 0.78 for Gram-negative bacilli pneumonia. The specificity of sputum Gram stain was 0.93 for Pneumococcal pneumonia, 0.96 for Staphylococcal pneumonia, 0.96 for H. influenzae pneumonia and 0.95 for Gram-negative bacilli pneumonia. The positive likelihood ratio (LR+) was 11.58 for Pneumococcal pneumonia, 19.38 for Staphylococcal pneumonia, 16.84 for H. influenzae pneumonia, 14.26 for Gram-negative bacilli pneumonia. The negative likelihood ratio (LR-) was 0.20 for Pneumococcal pneumonia, 0.25 for Staphylococcal pneumonia, 0.22 for H. influenzae pneumonia, and 0.23 for Gram-negative bacilli pneumonia. Sputum Gram stain is a dependable diagnostic test for the early etiological diagnosis of bacterial CAP that helps in choosing orthological and appropriate initial antimicrobial therapy.

Colour stabilities of three types of orthodontic clear aligners exposed to staining agents.

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Liu, Chen-Lu; Sun, Wen-Tian; Liao, Wen; Lu, Wen-Xin; Li, Qi-Wen; Jeong, Yunho; Liu, Jun; Zhao, Zhi-He

2016-12-16

The aim of this study was to evaluate and compare the colour stabilities of three types of orthodontic clear aligners exposed to staining agents in vitro. Sixty clear orthodontic aligners produced by three manufacturers (Invisalign, Angelalign, and Smartee) were immersed in three staining solutions (coffee, black tea, and red wine) and one control solution (distilled water). After 12-h and 7-day immersions, the aligners were washed in an ultrasonic cleaner and measured with a colourimeter. The colour changes (ΔE*) were calculated on the basis of the Commission Internationale de I'Eclairage L*a*b* colour system (CIE L*a*b*), and the results were then converted into National Bureau of Standards (NBS) units. Fourier transformation infrared (FT-IR) spectroscopy and scanning electron microscopy (SEM) were conducted to observe the molecular and morphologic alterations to the aligner surfaces, respectively. The three types of aligners exhibited slight colour changes after 12 h of staining, with the exception of the Invisalign aligners stained with coffee. The Invisalign aligners exhibited significantly higher ΔE* values (ranging from 0.30 to 27.81) than those of the Angelalign and Smartee aligners (ΔE* values ranging from 0.33 to 1.89 and 0.32 to 1.61, respectively, Paligners did not exhibit significant chemical differences before and after the immersions. The SEM results revealed different surface alterations to the three types of aligner materials after the 7-day staining. The three types of aesthetic orthodontic appliances exhibited colour stability after the 12-h immersion, with the exception of the Invisalign aligners stained by coffee. The Invisalign aligners were more prone than the Angelalign and Smartee aligners to pigmentation. Aligner materials may be improved by considering aesthetic colour stability properties.

Fluorescent Staining of Tea Pathogenic Fungi in Tea Leaves Using Fluorescein-labeled Lectin

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Yamada, Kengo; Yoshida, Katsuyuki; Sonoda, Ryoichi

Fluorochrome-labeled lectin, fluorescein conjugated wheat germ agglutinin (F-WGA) was applied to stain tea pathogenic fungi in tea leaf tissue. Infected leaves were fixed and decolorized with a mixture of ethanol and acetic acid, and cleared with 10% KOH for whole mount before staining with F-WGA. Hyphae of Pestalotiopsis longiseta, Pseudocercospora ocellata, Botrytis cinerea and Colletotrichum theae-sinensis fluoresced brightly in whole mount and sectioned samples of infected leaf tissue. In browned tissue, hyphae did not fluoresce frequently in whole mount sample. Autofluorescence of leaf tissue was strong in browned tissue of sections, it was removed by 10% KOH treatment before staining. Penetration hyphae of C. theae-sinensis in cell wall of trichome and hyphae in basal part of trichome did not fluoresced frequently. In whole mount samples of tea leaf infected with Exobasidium vexans and E. reticulatum, hymenia appeared on leaf surface fluoresced, but hyphae in leaf tissue did not fluoresce. In sectioned samples, hyphae fluoresced brightly when sections were treated with 10% KOH before staining.

A method for acetylcholinesterase staining of brain sections previously processed for receptor autoradiography.

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Lim, M M; Hammock, E A D; Young, L J

2004-02-01

Receptor autoradiography using selective radiolabeled ligands allows visualization of brain receptor distribution and density on film. The resolution of specific brain regions on the film often can be difficult to discern owing to the general spread of the radioactive label and the lack of neuroanatomical landmarks on film. Receptor binding is a chemically harsh protocol that can render the tissue virtually unstainable by Nissl and other conventional stains used to delineate neuroanatomical boundaries of brain regions. We describe a method for acetylcholinesterase (AChE) staining of slides previously processed for receptor binding. AChE staining is a useful tool for delineating major brain nuclei and tracts. AChE staining on sections that have been processed for receptor autoradiography provides a direct comparison of brain regions for more precise neuroanatomical description. We report a detailed thiocholine protocol that is a modification of the Koelle-Friedenwald method to amplify the AChE signal in brain sections previously processed for autoradiography. We also describe several temporal and experimental factors that can affect the density and clarity of the AChE signal when using this protocol.

Quantitative gel electrophoresis: new records in precision by elaborated staining and detection protocols.

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Deng, Xi; Schröder, Simone; Redweik, Sabine; Wätzig, Hermann

2011-06-01

Gel electrophoresis (GE) is a very common analytical technique for proteome research and protein analysis. Despite being developed decades ago, there is still a considerable need to improve its precision. Using the fluorescence of Colloidal Coomassie Blue -stained proteins in near-infrared (NIR), the major error source caused by the unpredictable background staining is strongly reduced. This result was generalized for various types of detectors. Since GE is a multi-step procedure, standardization of every single step is required. After detailed analysis of all steps, the staining and destaining were identified as the major source of the remaining variation. By employing standardized protocols, pooled percent relative standard deviations of 1.2-3.1% for band intensities were achieved for one-dimensional separations in repetitive experiments. The analysis of variance suggests that the same batch of staining solution should be used for gels of one experimental series to minimize day-to-day variation and to obtain high precision. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Metastatic hepatocellular carcinoma to the skin staining positive with HMB-45.

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Gross, Joshua A; Perniciaro, Charles; Gross, David J; Barksdale, Sarah K

2012-02-01

Hepatocellular carcinoma (HCC) is uncommonly observed as a cutaneous metastasis. We report a 76-year-old man with metastatic HCC to the skin of the nasal ala, diagnosed antecedent to the primary tumor. HCC was confirmed by positive immunostaining with Hep Par 1 in tissue from the metastasis and from a needle biopsy of the primary lesion. In addition, tumor cells from both the metastasis and liver stained positive with HMB-45. To our knowledge, HMB-45 positive staining has not been reported in either primary or metastatic HCC.

Methylene Blue-Aided In Vivo Staining of Central Airways during Flexible Bronchoscopy

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Sabine Zirlik

2012-01-01

Full Text Available Background. The early diagnosis of malignant and premalignant changes of the bronchial mucosa remains a major challenge during bronchoscopy. Intravital staining techniques are not new. Previous small case series suggested that analysis of the bronchial mucosal surface using chromoendoscopy allows a prediction between neoplastic and nonneoplastic lesions. Objectives. The aim of the present study was to evaluate chromobronchoscopy as a method to identify malignant and premalignant lesions in the central airways in a prospective manner. Methods. In 26 patients we performed chromoendoscopy with 0.1% methylene blue during ongoing flexible white light bronchoscopy. Circumscribed lesions in central airways were further analyzed by biopsies and histopathologic examination. Results. In the majority of cases neither flat nor polypoid lesions in the central airways were stained by methylene blue. In particular, exophytic growth of lung cancer did not show any specific pattern in chromobronchoscopy. However, a specific dye staining was detected in one case where exophytic growth of metastatic colorectal cancer was present in the right upper lobe. In two other cases, a circumscribed staining was noted in unsuspicious mucosa. But histology revealed inflammation only. Conclusions. In contrast to previous studies, the present findings clearly indicate that chromobronchoscopy is not useful for early detection of malignant or premalignant lesions of the central airways.

Factors affecting cadmium absorbed by pistachio kernel in calcareous soils, southeast of Iran.

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Shirani, H; Hosseinifard, S J; Hashemipour, H

2018-03-01

Cadmium (Cd) which does not have a biological role is one of the most toxic heavy metals for organisms. This metal enters environment through industrial processes and fertilizers. The main objective of this study was to determine the relationships between absorbed Cd by pistachio kernel and some of soil physical and chemical characteristics using modeling by stepwise regression and Artificial Neural Network (ANN), in calcareous soils in Rafsanjan region, southeast of Iran. For these purposes, 220 pistachio orchards were selected, and soil samples were taken from two depths of 0-40 and 40-80cm. Besides, fruit and leaf samples from branches with and without fruit were taken in each sampling point. The results showed that affecting factors on absorbed Cd by pistachio kernel which were obtained by regression method (pH and clay percent) were not interpretable, and considering unsuitable vales of determinant coefficient (R 2 ) and Root Mean Squares Error (RMSE), the model did not have sufficient validity. However, ANN modeling was highly accurate and reliable. Based on its results, soil available P and Zn and soil salinity were the most important factors affecting the concentration of Cd in pistachio kernel in pistachio growing areas of Rafsanjan. Copyright © 2017 Elsevier B.V. All rights reserved.

Bacteria transport and retention in intact calcareous soil columns under saturated flow conditions

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Farrokhian Firouzi Ahmad

2015-06-01

Full Text Available Study of bacterial transport and retention in soil is important for various environmental applications such as groundwater contamination and bioremediation of soil and water. The main objective of this research was to quantitatively assess bacterial transport and deposition under saturated conditions in calcareous soil. A series of leaching experiments was conducted on two undisturbed soil columns. Breakthrough curves of Pseudomonas fluorescens and Cl were measured. After the leaching experiment, spatial distribution of bacteria retention in the soil columns was determined. The HYDRUS-1D one- and two-site kinetic models were used to predict the transport and deposition of bacteria in soil. The results indicated that the two-site model fits the observed data better than one-site kinetic model. Bacteria interaction with the soil of kinetic site 1 revealed relatively fast attachment and slow detachment, whereas attachment to and detachment of bacteria from kinetic site 2 was fast. Fast attachment and slow detachment of site 1 can be attributed to soil calcium carbonate that has favorable attachment sites for bacteria. The detachment rate was less than 0.02 of the attachment rate, indicating irreversible attachment of bacteria. High reduction rate of bacteria was also attributed to soil calcium carbonate.

Trace element analysis of blackish staining on the crowns of human archaeological teeth

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Stermer, E.M. [Univ. of Oslo, Dept. of Oral Radiology, Oslo (Norway); Risnes, S. [Univ. of Oslo, Dept. of Oral Biology, Faculty of Dentistry, Oslo (Norway); Fischer, P.M. [Chalmers Univ. of Technology, Dept. of Physics, SIMS Lab., Goeteborg (Sweden)

1996-10-01

A blackish staining found on the crowns of teeth of 51 skulls from the excavation of the medieval St. Olav`s church in Trondheim was analyzed using secondary ion mass spectrometry (SIMS) and atomic absorption spectrometry (AAS). In four teeth, mass spectra and step scan concentration profiles of SIMS were performed and compared with the grey scale pattern in photographs of the analyzed paths. The manganese curve showed the highest degree of conformity with the grey scale pattern. The AAS analysis confirmed the increased content of manganese in blackish stained enamel. It was concluded that manganese, probably in the form of an oxide deposited from the soil, was the cause of the blackish staining. (au).

Trace element analysis of blackish staining on the crowns of human archaeological teeth

International Nuclear Information System (INIS)

Stermer, E.M.; Risnes, S.; Fischer, P.M.

1996-01-01

A blackish staining found on the crowns of teeth of 51 skulls from the excavation of the medieval St. Olav's church in Trondheim was analyzed using secondary ion mass spectrometry (SIMS) and atomic absorption spectrometry (AAS). In four teeth, mass spectra and step scan concentration profiles of SIMS were performed and compared with the grey scale pattern in photographs of the analyzed paths. The manganese curve showed the highest degree of conformity with the grey scale pattern. The AAS analysis confirmed the increased content of manganese in blackish stained enamel. It was concluded that manganese, probably in the form of an oxide deposited from the soil, was the cause of the blackish staining. (au)

The Comparative Study of Art of Manufacturing Orosi and Stained Glass Windows in Iran and Europe

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Zahra Sadat Abooei Mehrizi

2017-12-01

Full Text Available For a long time, glass manufacturing art has been globally common. There are certain similarities between Stained Glass and Orosi works. Based on historical texts, peak of Orosi art in Iran occurred during the reign of Safavid dynasty while its fall was after Qajar era. After introduction to churches after 12th century, Stained Glass manufacturing art was officially recognized. In contemporary era, Orosi art has almost faded away since it did not adapt to architecture. Similarly, Stained Glass art did not develop after it was introduced to Iran. The objectives of comparison between these arts are clarification of effects of the two arts on each other as well as better understanding of Orosi glass and Stained Glass arts. From methodological viewpoint, this study is descriptive-analytical in nature. In order to obtain better results, similar and available works of Orosi and Stained Glass arts were studied. The results of comparing these two arts suggested similar manufacturing methods and designs. In addition, a common application of the two arts is communication of greatness of the building to visitors’ minds. Stained Glass was mostly used for representation of Christ’s story while Orosi art was commonly used for depicting geometrical patterns. As a result, Orosi art was not initially influenced by Stained Glass art. In some cases, one could claim that Stained Glass art was influenced by Orosi art. Numerous factors played a role in creating differences between these two arts among which one could point to climatic conditions and patrons of such arts.

Identification and age estimation of blood stains on colored backgrounds by near infrared spectroscopy