A hierarchy of Liouville integrable discrete Hamiltonian equations
Xu Xixiang [College of Science, Shandong University of Science and Technology, Qingdao 266510 (China)], E-mail: xixiang_xu@yahoo.com.cn
2008-05-12
Based on a discrete four-by-four matrix spectral problem, a hierarchy of Lax integrable lattice equations with two potentials is derived. Two Hamiltonian forms are constructed for each lattice equation in the resulting hierarchy by means of the discrete variational identity. A strong symmetry operator of the resulting hierarchy is given. Finally, it is shown that the resulting lattice equations are all Liouville integrable discrete Hamiltonian systems.
Integrability of Liouville system on high genus Riemann surface: Pt. 1
Chen Yixin; Gao Hongbo
1992-01-01
By using the theory of uniformization of Riemann-surfaces, we study properties of the Liouville equation and its general solution on a Riemann surface of genus g>1. After obtaining Hamiltonian formalism in terms of free fields and calculating classical exchange matrices, we prove the classical integrability of Liouville system on high genus Riemann surface
Essay on Fractional Riemann-Liouville Integral Operator versus Mikusinski’s
Ming Li
2013-01-01
Full Text Available This paper presents the representation of the fractional Riemann-Liouville integral by using the Mikusinski operators. The Mikusinski operators discussed in the paper may yet provide a new view to describe and study the fractional Riemann-Liouville integral operator. The present result may be useful for applying the Mikusinski operational calculus to the study of fractional calculus in mathematics and to the theory of filters of fractional order in engineering.
Bargmann Symmetry Constraint for a Family of Liouville Integrable Differential-Difference Equations
Xu Xixiang
2012-01-01
A family of integrable differential-difference equations is derived from a new matrix spectral problem. The Hamiltonian forms of obtained differential-difference equations are constructed. The Liouville integrability for the obtained integrable family is proved. Then, Bargmann symmetry constraint of the obtained integrable family is presented by binary nonliearization method of Lax pairs and adjoint Lax pairs. Under this Bargmann symmetry constraints, an integrable symplectic map and a sequences of completely integrable finite-dimensional Hamiltonian systems in Liouville sense are worked out, and every integrable differential-difference equations in the obtained family is factored by the integrable symplectic map and a completely integrable finite-dimensional Hamiltonian system. (general)
Xia Tiecheng; Chen Xiaohong; Chen Dengyuan
2004-01-01
An eigenvalue problem and the associated new Lax integrable hierarchy of nonlinear evolution equations are presented in this paper. As two reductions, the generalized nonlinear Schroedinger equations and the generalized mKdV equations are obtained. Zero curvature representation and bi-Hamiltonian structure are established for the whole hierarchy based on a pair of Hamiltonian operators (Lenard's operators), and it is shown that the hierarchy of nonlinear evolution equations is integrable in Liouville's sense. Thus the hierarchy of nonlinear evolution equations has infinitely many commuting symmetries and conservation laws. Moreover the eigenvalue problem is nonlinearized as a finite-dimensional completely integrable system under the Bargmann constraint between the potentials and the eigenvalue functions. Finally finite-dimensional Liouville integrable system are found, and the involutive solutions of the hierarchy of equations are given. In particular, the involutive solutions are developed for the system of generalized nonlinear Schroedinger equations
Sun Yepeng; Chen Dengyuan
2006-01-01
A new spectral problem and the associated integrable hierarchy of nonlinear evolution equations are presented in this paper. It is shown that the hierarchy is completely integrable in the Liouville sense and possesses bi-Hamiltonian structure. An explicit symmetry constraint is proposed for the Lax pairs and the adjoint Lax pairs of the hierarchy. Moreover, the corresponding Lax pairs and adjoint Lax pairs are nonlinearized into a hierarchy of commutative, new finite-dimensional completely integrable Hamiltonian systems in the Liouville sense. Further, an involutive representation of solution of each equation in the hierarchy is given. Finally, expanding integrable models of the hierarchy are constructed by using a new Loop algebra
Liu, Jian; Zhang, Zhijun
2016-01-01
Path integral Liouville dynamics (PILD) is applied to vibrational dynamics of several simple but representative realistic molecular systems (OH, water, ammonia, and methane). The dipole-derivative autocorrelation function is employed to obtain the infrared spectrum as a function of temperature and isotopic substitution. Comparison to the exact vibrational frequency shows that PILD produces a reasonably accurate peak position with a relatively small full width at half maximum. PILD offers a potentially useful trajectory-based quantum dynamics approach to compute vibrational spectra of molecular systems
Riemann-Liouville integrals of fractional order and extended KP hierarchy
Kamata, Masaru; Nakamula, Atsushi
2002-01-01
An attempt to formulate the extensions of the KP hierarchy by introducing fractional-order pseudo-differential operators is given. In the case of the extension with the half-order pseudo-differential operators, a system analogous to the supersymmetric extensions of the KP hierarchy is obtained. Unlike the supersymmetric extensions, no Grassmannian variable appears in the hierarchy considered here. More general hierarchies constructed by the 1/Nth-order pseudo-differential operators, their integrability and the reduction procedure are also investigated. In addition to finding the new extensions of the KP hierarchy, a brief introduction to the Riemann-Liouville integral is provided to yield a candidate for the fractional-order pseudo-differential operators
A trick loop algebra and a corresponding Liouville integrable hierarchy of evolution equations
Zhang Yufeng; Xu Xixiang
2004-01-01
A subalgebra of loop algebra A-bar 2 is first constructed, which has its own special feature. It follows that a new Liouville integrable hierarchy of evolution equations is obtained, possessing a tri-Hamiltonian structure, which is proved by us in this paper. Especially, three symplectic operators are constructed directly from recurrence relations. The conjugate operator of a recurrence operator is a hereditary symmetry. As reduction cases of the hierarchy presented in this paper, the celebrated MKdV equation and heat-conduction equation are engendered, respectively. Therefore, we call the hierarchy a generalized MKdV-H system. At last, a high-dimension loop algebra G-bar is constructed by making use of a proper scalar transformation. As a result, a type expanding integrable model of the MKdV-H system is given
Manukure, Solomon
2018-04-01
We construct finite-dimensional Hamiltonian systems by means of symmetry constraints from the Lax pairs and adjoint Lax pairs of a bi-Hamiltonian hierarchy of soliton equations associated with the 3-dimensional special linear Lie algebra, and discuss the Liouville integrability of these systems based on the existence of sufficiently many integrals of motion.
Super-Liouville — double Liouville correspondence
Hadasz, Leszek; Jaskólski, Zbigniew
2014-05-01
The AGT motivated relation between the tensor product of the = 1 super-Liouville field theory with the imaginary free fermion (SL) and a certain projected tensor product of the real and the imaginary Liouville field theories (LL) is analyzed. Using conformal field theory techniques we give a complete proof of the equivalence in the NS sector. It is shown that the SL-LL correspondence is based on the equivalence of chiral objects including suitably chosen chiral structure constants of all the three Liouville theories involved.
Super-Liouville — double Liouville correspondence
Hadasz, Leszek; Jaskólski, Zbigniew
2014-01-01
The AGT motivated relation between the tensor product of the N=1 super-Liouville field theory with the imaginary free fermion (SL) and a certain projected tensor product of the real and the imaginary Liouville field theories (LL) is analyzed. Using conformal field theory techniques we give a complete proof of the equivalence in the NS sector. It is shown that the SL-LL correspondence is based on the equivalence of chiral objects including suitably chosen chiral structure constants of all the three Liouville theories involved.
Super-Liouville — double Liouville correspondence
Hadasz, Leszek [M. Smoluchowski Institute of Physics, Jagiellonian University,W. Reymonta 4, 30-059 Kraków (Poland); Jaskólski, Zbigniew [Institute of Theoretical Physics, University of Wrocław,pl. M. Borna 1, 95-204 Wrocław (Poland)
2014-05-27
The AGT motivated relation between the tensor product of the N=1 super-Liouville field theory with the imaginary free fermion (SL) and a certain projected tensor product of the real and the imaginary Liouville field theories (LL) is analyzed. Using conformal field theory techniques we give a complete proof of the equivalence in the NS sector. It is shown that the SL-LL correspondence is based on the equivalence of chiral objects including suitably chosen chiral structure constants of all the three Liouville theories involved.
La, H.
1992-01-01
A new geometric formulation of Liouville gravity based on the area preserving diffeo-morphism is given and a possible alternative to reinterpret Liouville gravity is suggested, namely, a scalar field coupled to two-dimensional gravity with a curvature constraint
Liouville gravity on bordered surfaces
Jaskolski, Z.
1991-11-01
The functional quantization of the Liouville gravity on bordered surfaces in the conformal gauge is developed. It was shown that the geometrical interpretation of the Polyakov path integral as a sum over bordered surfaces uniquely determines the boundary conditions for the fields involved. The gravitational scaling dimensions of boundary and bulk operators and the critical exponents are derived. In particular, the boundary Hausdorff dimension is calculated. (author). 21 refs
Schomerus, Volker; Suchanek, Paulina; Univ. of Wroclaw
2012-10-01
N=1 super Liouville field theory is one of the simplest non-rational conformal field theories. It possesses various important extensions and interesting applications, e.g. to the AGT relation with 4D gauge theory or the construction of the OSP(1 vertical stroke 2) WZW model. In both setups, the N=1 Liouville field is accompanied by an additional free fermion. Recently, Belavin et al. suggested a bosonization of the product theory in terms of two bosonic Liouville fields. While one of these Liouville fields is standard, the second turns out to be imaginary (or time-like). We extend the proposal to the R sector and perform extensive checks based on detailed comparison of 3-point functions involving several super-conformal primaries and descendants. On the basis of such strong evidence we sketch a number of interesting potential applications of this intriguing bozonization.
Liouville quantum gravity on complex tori
David, François [Institut de Physique Théorique, CNRS, URA 2306, CEA, IPhT, Gif-sur-Yvette (France); Rhodes, Rémi [Université Paris-Est Marne la Vallée, LAMA, Champs sur Marne (France); Vargas, Vincent [ENS Paris, DMA, 45 rue d’Ulm, 75005 Paris (France)
2016-02-15
In this paper, we construct Liouville Quantum Field Theory (LQFT) on the toroidal topology in the spirit of the 1981 seminal work by Polyakov [Phys. Lett. B 103, 207 (1981)]. Our approach follows the construction carried out by the authors together with Kupiainen in the case of the Riemann sphere [“Liouville quantum gravity on the Riemann sphere,” e-print arXiv:1410.7318]. The difference is here that the moduli space for complex tori is non-trivial. Modular properties of LQFT are thus investigated. This allows us to integrate the LQFT on complex tori over the moduli space, to compute the law of the random Liouville modulus, therefore recovering (and extending) formulae obtained by physicists, and make conjectures about the relationship with random planar maps of genus one, eventually weighted by a conformal field theory and conformally embedded onto the torus.
Ellis, John; Mavromatos, Nikolaos; Nanopoulos, Dimitri; Sakharov, Alexander
2004-01-01
We present a specific model for cosmological inflation driven by the Liouville field in a non-critical supersymmetric string framework, in which the departure from criticality is due to open strings stretched between two moving Type-II 5-branes. We use WMAP and other data on fluctuations in the cosmic microwave background to fix the parameters of the model, such as the relative separation and velocity of the 5-branes, respecting also the constraints imposed by data on light propagation from distant gamma-ray bursters. The model also suggests a small, relaxing component in the present vacuum energy that may accommodate the breaking of supersymmetry
Sturm--Liouville eigenvalue problem
Bailey, P.B.
1977-01-01
The viewpoint is taken that Sturn--Liouville problem is specified and the problem of computing one or more of the eigenvalues and possibly the corresponding eigenfunctions is presented for solution. The procedure follows the construction of a computer code, although such a code is not constructed, intended to solve Sturn--Liouville eigenvalue problems whether singular or nonsingular
Tuckerman, Mark E; Alejandre, Jose; Lopez-Rendon, Roberto; Jochim, Andrea L; Martyna, Glenn J
2006-01-01
The constant-pressure, constant-temperature (NPT) molecular dynamics approach is re-examined from the viewpoint of deriving a new measure-preserving reversible geometric integrator for the equations of motion. The underlying concepts of non-Hamiltonian phase-space analysis, measure-preserving integrators and the symplectic property for Hamiltonian systems are briefly reviewed. In addition, current measure-preserving schemes for the constant-volume, constant-temperature ensemble are also reviewed. A new geometric integrator for the NPT method is presented, is shown to preserve the correct phase-space volume element and is demonstrated to perform well in realistic examples. Finally, a multiple time-step version of the integrator is presented for treating systems with motion on several time scales
Connections of the Liouville model and XXZ spin chain
Faddeev, Ludvig D.; Tirkkonen, Olav
1995-02-01
The quantum theory of the Liouville model with imaginary field is considered using the Quantum Inverse Scattering Method. An integrable structure with non-trivial spectral-parameter dependence is developed for lattice Liouville theory by scaling the L-matrix of lattice sine-Gordon theory. This L-matrix yields Bethe ansatz equations for Liouville theory, by the methods of the algebraic Bethe ansatz. Using the string picture of excited Bethe states, the lattice Liouville Bethe equations are mapped to the corresponding spin- {1}/{2} XXZ chain equations. The well developed theory of finite-size corrections in spin chains is used to deduce the conformal properties of the lattice Liouville Bethe states. The unitary series of conformal field theories emerge for Liouville couplings of the form γ = πν/( ν + 1), corresponding to root of unity XXZ anisotropies. The Bethe states give the full spectrum of the corresponding unitary conformal field theory, with the primary states in the Kač table parameterized by a string length K, and the remnant of the chain length mod ( ν + 1).
Connections of the Liouville model and XXZ spin chain
Faddeev, L.D.; Tirkkonen, O.
1995-01-01
The quantum theory of the Liouville model with imaginary field is considered using the Quantum Inverse Scattering Method. An integrable structure with non-trivial spectral-parameter dependence is developed for lattice Liouville theory by scaling the L-matrix of lattice sine-Gordon theory. This L-matrix yields Bethe ansatz equations for Liouville theory, by the methods of the algebraic Bethe ansatz. Using the string picture of excited Bethe states, the lattice Liouville Bethe equations are mapped to the corresponding spin-1/2 XXZ chain equations. The well developed theory of finite-size corrections in spin chains is used to deduce the conformal properties of the lattice Liouville Bethe states. The unitary series of conformal field theories emerge for Liouville couplings of the form γ= πν/(ν+1), corresponding to root of unity XXZ anisotropies. The Bethe states give the full spectrum of the corresponding unitary conformal field theory, with the primary states in the Kac table parameterized by a string length K, and the remnant of the chain length mod (ν+1). (orig.)
Noncanonical Hamiltonian mechanics
Litteljohn, R.G.
1986-01-01
Noncanonical variables in Hamiltonian mechanics were first used by Lagrange in 1808. In spite of this, most work in Hamiltonian mechanics has been carried out in canonical variables, up to this day. One reason for this is that noncanonical coordinates are seldom needed for mechanical problems based on Lagrangians of the form L = T - V, where T is the kinetic energy and V is the potential energy. Of course, such Lagrangians arise naturally in celestial mechanics, and as a result they form the paradigms of nineteenth-century mechanics and have become enshrined in all the mechanics textbooks. Certain features of modern problems, however, lead to the use of noncanonical coordinates. Among these are issues of gauge invariance and singular Lagrange a Poisson structures. In addition, certain problems, like the flow of magnetic-field lines in physical space, are naturally formulated in terms of noncanonical coordinates. None of these features is present in the nineteenth-century paradigms of mechanics, but they do arise in problems involving particle motion in the presence of magnetic fields. For example, the motion of a particle in an electromagnetic wave is an important one in plasma physics, but the usual Hamiltonian formulation is gauge dependent. For this problem, noncanonical approaches based on Lagrangians in phase space lead to powerful computational techniques which are gauge invariant. In the limit of strong magnetic fields, particle motion becomes 'guiding-center motion'. Guiding-center motion is also best understood in terms of noncanonical coordinates. Finally the flow of magnetic-field lines through physical space is a Hamiltonian system which is best understood with noncanonical coordinates. No doubt many more systems will arise in the future for which these noncanonical techniques can be applied. (author)
Topological strings from Liouville gravity
Ishibashi, N.; Li, M.
1991-01-01
We study constrained SU(2) WZW models, which realize a class of two-dimensional conformal field theories. We show that they give rise to topological gravity coupled to the topological minimal models when they are coupled to Liouville gravity. (orig.)
H+3 WZNW model from Liouville field theory
Hikida, Yasuaki; Schomerus, Volker
2007-01-01
There exists an intriguing relation between genus zero correlation functions in the H + 3 WZNW model and in Liouville field theory. We provide a path integral derivation of the correspondence and then use our new approach to generalize the relation to surfaces of arbitrary genus g. In particular we determine the correlation functions of N primary fields in the WZNW model explicitly through Liouville correlators with N+2g-2 additional insertions of certain degenerate fields. The paper concludes with a list of interesting further extensions and a few comments on the relation to the geometric Langlands program
Liouville's theorem and the method of the inverse problem
Its, A.R.
1985-01-01
An approach to the investigation of the Zakharov-Shabat equations is developed. This approach is based on a classical theorem of Liouville and is the synthesis of ''finite-zone'' integration, the matrix Riemann problem method and the theory of isomonodromy deformations of differential equations. The effectiveness of the proposed scheme is demonstrated by developing ''dressing procedures'' for the Bullough-Dodd equation
On the solution of the Liouville equation over a rectangle
A. M. Arthurs
1996-01-01
Full Text Available Methods for integral equations are used to derive pointwise bounds for the solution of a boundary value problem for the nonlinear Liouville partial differential equation over a rectangle. Several test calculations are performed and the resulting solutions are more accurate than those obtained previously by other methods.
Liouville action in cone gauge
Zamolodchikov, A.B.
1989-01-01
The effective action of the conformally invariant field theory in the curved background space is considered in the light cone gauge. The effective potential in the classical background stress is defined as the Legendre transform of the Liouville action. This potential is tightly connected with the sl(2) current algebra. The series of the covariant differential operators is constructed and the anomalies of their determinants are reduced to this effective potential. 7 refs
Johnny Henderson
2016-01-01
Full Text Available We investigate the existence and nonexistence of positive solutions for a system of nonlinear Riemann-Liouville fractional differential equations with two parameters, subject to coupled integral boundary conditions.
Gauge theory loop operators and Liouville theory
Drukker, Nadav; Teschner, Joerg
2009-10-01
We propose a correspondence between loop operators in a family of four dimensional N=2 gauge theories on S 4 - including Wilson, 't Hooft and dyonic operators - and Liouville theory loop operators on a Riemann surface. This extends the beautiful relation between the partition function of these N=2 gauge theories and Liouville correlators found by Alday, Gaiotto and Tachikawa. We show that the computation of these Liouville correlators with the insertion of a Liouville loop operator reproduces Pestun's formula capturing the expectation value of a Wilson loop operator in the corresponding gauge theory. We prove that our definition of Liouville loop operators is invariant under modular transformations, which given our correspondence, implies the conjectured action of S-duality on the gauge theory loop operators. Our computations in Liouville theory make an explicit prediction for the exact expectation value of 't Hooft and dyonic loop operators in these N=2 gauge theories. The Liouville loop operators are also found to admit a simple geometric interpretation within quantum Teichmueller theory as the quantum operators representing the length of geodesics. We study the algebra of Liouville loop operators and show that it gives evidence for our proposal as well as providing definite predictions for the operator product expansion of loop operators in gauge theory. (orig.)
Exact solution of super Liouville model
Yang Zhanying; Zhao Liu; Zhen Yi
2000-01-01
Using Leznov-Saveliev algebraic analysis and Drinfeld-Sokolov construction, the authors obtained the explicit solutions to the super Liouville system in super covariant form and component form. The explicit solution in component form reduces naturally into the Egnchi-Hanson instanton solution of the usual Liouville equation if all the Grassmann odd components are set equal to zero
Gauge theory loop operators and Liouville theory
Drukker, Nadav [Humboldt Univ. Berlin (Germany). Inst. fuer Physik; Gomis, Jaume; Okuda, Takuda [Perimeter Inst. for Theoretical Physics, Waterloo, ON (Canada); Teschner, Joerg [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)
2009-10-15
We propose a correspondence between loop operators in a family of four dimensional N=2 gauge theories on S{sup 4} - including Wilson, 't Hooft and dyonic operators - and Liouville theory loop operators on a Riemann surface. This extends the beautiful relation between the partition function of these N=2 gauge theories and Liouville correlators found by Alday, Gaiotto and Tachikawa. We show that the computation of these Liouville correlators with the insertion of a Liouville loop operator reproduces Pestun's formula capturing the expectation value of a Wilson loop operator in the corresponding gauge theory. We prove that our definition of Liouville loop operators is invariant under modular transformations, which given our correspondence, implies the conjectured action of S-duality on the gauge theory loop operators. Our computations in Liouville theory make an explicit prediction for the exact expectation value of 't Hooft and dyonic loop operators in these N=2 gauge theories. The Liouville loop operators are also found to admit a simple geometric interpretation within quantum Teichmueller theory as the quantum operators representing the length of geodesics. We study the algebra of Liouville loop operators and show that it gives evidence for our proposal as well as providing definite predictions for the operator product expansion of loop operators in gauge theory. (orig.)
H3+-WZNW correlators from Liouville theory
Ribault, Sylvain; Teschner, Joerg
2005-01-01
We prove that arbitrary correlation functions of the H 3 + -WZNW model on a sphere have a simple expression in terms of Liouville theory correlation functions. This is based on the correspondence between the KZ and BPZ equations, and on relations between the structure constants of Liouville theory and the H 3 + -WZNW model. In the critical level limit, these results imply a direct link between eigenvectors of the Gaudin hamiltonians and the problem of uniformization of Riemann surfaces. We also present an expression for correlation functions of the SL(2)/U(1) gauged WZNW model in terms of correlation functions in Liouville theory
H+3 WZNW model from Liouville field theory
Hikida, Y.; Schomerus, V.
2007-06-01
There exists an intriguing relation between genus zero correlation functions in the H + 3 WZNW model and in Liouville field theory. This was found by Ribault and Teschner based in part on earlier ideas by Stoyanovsky. We provide a path integral derivation of the correspondence and then use our new approach to generalize the relation to surfaces of arbitrary genus g. In particular we determine the correlation functions of N primary fields in the WZNW model explicitly through Liouville correlators with N+2g-2 additional insertions of certain degenerate fields. The paper concludes with a list of interesting further extensions and a few comments on the relation to the geometric Langlands program. (orig.)
Covariant currents in N=2 super-Liouville theory
Gomis, J.; Suzuki, Hiroshi
1993-01-01
Based on a path-integral prescription for anomaly calculation, we analyze an effective theory of the two-dimensional N=2 supergravity, i.e. N=2 super-Liouville theory. We calculate the anomalies associated with the BRST supercurrent and the ghost-number supercurrent. From those expressions of anomalies, we construct covariant BRST and ghost-number supercurrents in the effective theory. We then show that the (super-)coordinate BRST current algebra forms a superfield extension of the topological conformal algebra for an arbitrary type of conformal matter or, in terms of the string theory, for an arbitrary number of space-time dimensions. This fact is in great contrast with N=0 and N=1 (super-)Liouville theory, where the topological algebra singles out a particular value of dimensions. Our observation suggests a topological nature of the two-dimensional N=2 supergravity as a quantum theory. (orig.)
Schomerus, Volker [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Suchanek, Paulina [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Univ. of Wroclaw (Poland). Inst. for Theoretical Physics
2012-10-15
N=1 super Liouville field theory is one of the simplest non-rational conformal field theories. It possesses various important extensions and interesting applications, e.g. to the AGT relation with 4D gauge theory or the construction of the OSP(1 vertical stroke 2) WZW model. In both setups, the N=1 Liouville field is accompanied by an additional free fermion. Recently, Belavin et al. suggested a bosonization of the product theory in terms of two bosonic Liouville fields. While one of these Liouville fields is standard, the second turns out to be imaginary (or time-like). We extend the proposal to the R sector and perform extensive checks based on detailed comparison of 3-point functions involving several super-conformal primaries and descendants. On the basis of such strong evidence we sketch a number of interesting potential applications of this intriguing bozonization.
Semiclassical limit of the FZZT Liouville theory
Hadasz, Leszek; Jaskolski, Zbigniew
2006-01-01
The semiclassical limit of the FZZT Liouville theory on the upper half plane with bulk operators of arbitrary type and with elliptic boundary operators is analyzed. We prove the Polyakov conjecture for an appropriate classical Liouville action. This action is calculated in a number of cases: One bulk operator of arbitrary type, one bulk and one boundary, and two boundary elliptic operators. The results are in agreement with the classical limits of the corresponding quantum correlators
Semiclassical limit of the FZZT Liouville theory
Hadasz, Leszek; Jaskólski, Zbigniew
2006-11-01
The semiclassical limit of the FZZT Liouville theory on the upper half plane with bulk operators of arbitrary type and with elliptic boundary operators is analyzed. We prove the Polyakov conjecture for an appropriate classical Liouville action. This action is calculated in a number of cases: One bulk operator of arbitrary type, one bulk and one boundary, and two boundary elliptic operators. The results are in agreement with the classical limits of the corresponding quantum correlators.
Semiclassical limit of the FZZT Liouville theory
Hadasz, Leszek; Jaskolski, Zbigniew
2006-01-01
The semiclassical limit of the FZZT Liouville theory on the upper half plane with bulk operators of arbitrary type and with elliptic boundary operators is analyzed. We prove the Polyakov conjecture for an appropriate classical Liouville action. This action is calculated in a number of cases: one bulk operator of arbitrary type, one bulk and one boundary, and two boundary elliptic operators. The results are in agreement with the classical limits of the corresponding quantum correlators.
Semiclassical limit of the FZZT Liouville theory
Hadasz, Leszek [Physikalisches Institut, Rheinische Friedrich-Wilhelms-Universitaet, Nussallee 12, 53115 Bonn (Germany); M. Smoluchowski Institute of Physics, Jagiellonian University, W. Reymonta 4, 30-059 Cracow (Poland)]. E-mail: hadasz@th.if.uj.edu.pl; Jaskolski, Zbigniew [Institute of Theoretical Physics, University of Wroclaw, pl. M. Borna 9, 50-204 Wroclaw (Poland)]. E-mail: jask@ift.uni.wroc.pl
2006-11-27
The semiclassical limit of the FZZT Liouville theory on the upper half plane with bulk operators of arbitrary type and with elliptic boundary operators is analyzed. We prove the Polyakov conjecture for an appropriate classical Liouville action. This action is calculated in a number of cases: One bulk operator of arbitrary type, one bulk and one boundary, and two boundary elliptic operators. The results are in agreement with the classical limits of the corresponding quantum correlators.
Liouville's theorem and phase-space cooling
Mills, R.L.; Sessler, A.M.
1993-01-01
A discussion is presented of Liouville's theorem and its consequences for conservative dynamical systems. A formal proof of Liouville's theorem is given. The Boltzmann equation is derived, and the collisionless Boltzmann equation is shown to be rigorously true for a continuous medium. The Fokker-Planck equation is derived. Discussion is given as to when the various equations are applicable and, in particular, under what circumstances phase space cooling may occur
Touching random surfaces and Liouville gravity
Klebanov, I.R.
1995-01-01
Large N matrix models modified by terms of the form g(TrΦ n ) 2 generate random surfaces which touch at isolated points. Matrix model results indicate that, as g is increased to a special value g t , the string susceptibility exponent suddenly jumps from its conventional value γ to γ/(γ-1). We study this effect in Liouville gravity and attribute it to a change of the interaction term from Oe α + φ for g t to Oe α - φ for g=g t (α + and α - are the two roots of the conformal invariance condition for the Liouville dressing of a matter operator O). Thus, the new critical behavior is explained by the unconventional branch of Liouville dressing in the action
Sturm-Liouville operators and applications
Marchenko, Vladimir A
2011-01-01
The spectral theory of Sturm-Liouville operators is a classical domain of analysis, comprising a wide variety of problems. Besides the basic results on the structure of the spectrum and the eigenfunction expansion of regular and singular Sturm-Liouville problems, it is in this domain that one-dimensional quantum scattering theory, inverse spectral problems, and the surprising connections of the theory with nonlinear evolution equations first become related. The main goal of this book is to show what can be achieved with the aid of transformation operators in spectral theory as well as in their
Classical Liouville action on the sphere with three hyperbolic singularities
Hadasz, Leszek E-mail: hadasz@th.if.uj.edu.pl; Jaskolski, Zbigniew E-mail: jask@ift.uniwroc.pl
2004-08-30
The classical solution to the Liouville equation in the case of three hyperbolic singularities of its energy-momentum tensor is derived and analyzed. The recently proposed classical Liouville action is explicitly calculated in this case. The result agrees with the classical limit of the three-point function in the DOZZ solution of the quantum Liouville theory.
Classical Liouville action on the sphere with three hyperbolic singularities
Hadasz, Leszek; Jaskólski, Zbigniew
2004-08-01
The classical solution to the Liouville equation in the case of three hyperbolic singularities of its energy-momentum tensor is derived and analyzed. The recently proposed classical Liouville action is explicitly calculated in this case. The result agrees with the classical limit of the three-point function in the DOZZ solution of the quantum Liouville theory.
Classical Liouville action on the sphere with three hyperbolic singularities
Hadasz, Leszek; Jaskolski, Zbigniew
2004-01-01
The classical solution to the Liouville equation in the case of three hyperbolic singularities of its energy-momentum tensor is derived and analyzed. The recently proposed classical Liouville action is explicitly calculated in this case. The result agrees with the classical limit of the three-point function in the DOZZ solution of the quantum Liouville theory
Modular bootstrap in Liouville field theory
Hadasz, Leszek; Jaskolski, Zbigniew; Suchanek, Paulina
2010-01-01
The modular matrix for the generic 1-point conformal blocks on the torus is expressed in terms of the fusion matrix for the 4-point blocks on the sphere. The modular invariance of the toric 1-point functions in the Liouville field theory with DOZZ structure constants is proved.
Modular bootstrap in Liouville field theory
Hadasz, Leszek, E-mail: hadasz@th.if.uj.edu.p [M. Smoluchowski Institute of Physics, Jagiellonian University, Reymonta 4, 30-059 Krakow (Poland); Jaskolski, Zbigniew, E-mail: jask@ift.uni.wroc.p [Institute of Theoretical Physics, University of Wroclaw, pl. M. Borna, 50-204 Wroclaw (Poland); Suchanek, Paulina, E-mail: paulina@ift.uni.wroc.p [Institute of Theoretical Physics, University of Wroclaw, pl. M. Borna, 50-204 Wroclaw (Poland)
2010-02-22
The modular matrix for the generic 1-point conformal blocks on the torus is expressed in terms of the fusion matrix for the 4-point blocks on the sphere. The modular invariance of the toric 1-point functions in the Liouville field theory with DOZZ structure constants is proved.
Modular bootstrap in Liouville field theory
Hadasz, Leszek; Jaskólski, Zbigniew; Suchanek, Paulina
2010-02-01
The modular matrix for the generic 1-point conformal blocks on the torus is expressed in terms of the fusion matrix for the 4-point blocks on the sphere. The modular invariance of the toric 1-point functions in the Liouville field theory with DOZZ structure constants is proved.
'Footballs', conical singularities, and the Liouville equation
Redi, Michele
2005-01-01
We generalize the football shaped extra dimensions scenario to an arbitrary number of branes. The problem is related to the solution of the Liouville equation with singularities, and explicit solutions are presented for the case of three branes. The tensions of the branes do not need to be tuned with each other but only satisfy mild global constraints
Sturm-Liouville BVPs with Caratheodory nonlinearities
Abdelhamid Benmezai
2016-11-01
Full Text Available In this article we study the existence and multiplicity of solutions for several classes of Sturm-Liouville boundary value problems having Caratheodory nonlinearities. Many results existing in the literature for such boundary value problems in the continuous framework will find in this work their extensions to the Caratheodory setting.
Quasi-equilibria in reduced Liouville spaces.
Halse, Meghan E; Dumez, Jean-Nicolas; Emsley, Lyndon
2012-06-14
The quasi-equilibrium behaviour of isolated nuclear spin systems in full and reduced Liouville spaces is discussed. We focus in particular on the reduced Liouville spaces used in the low-order correlations in Liouville space (LCL) simulation method, a restricted-spin-space approach to efficiently modelling the dynamics of large networks of strongly coupled spins. General numerical methods for the calculation of quasi-equilibrium expectation values of observables in Liouville space are presented. In particular, we treat the cases of a time-independent Hamiltonian, a time-periodic Hamiltonian (with and without stroboscopic sampling) and powder averaging. These quasi-equilibrium calculation methods are applied to the example case of spin diffusion in solid-state nuclear magnetic resonance. We show that there are marked differences between the quasi-equilibrium behaviour of spin systems in the full and reduced spaces. These differences are particularly interesting in the time-periodic-Hamiltonian case, where simulations carried out in the reduced space demonstrate ergodic behaviour even for small spins systems (as few as five homonuclei). The implications of this ergodic property on the success of the LCL method in modelling the dynamics of spin diffusion in magic-angle spinning experiments of powders is discussed.
Correlation functions in unitary minimal Liouville gravity and Frobenius manifolds
Belavin, V. [I.E. Tamm Department of Theoretical Physics, P.N. Lebedev Physical Institute,Leninsky prospect 53, 119991 Moscow (Russian Federation); Department of Quantum Physics, Institute for Information Transmission Problems,Bolshoy Karetny per. 19, 127994 Moscow (Russian Federation); Department of Theoretical Physics, National Research Nuclear University MEPhI,Kashirskoe shosse 31, 115409 Moscow (Russian Federation)
2015-02-10
We continue to study minimal Liouville gravity (MLG) using a dual approach based on the idea that the MLG partition function is related to the tau function of the A{sub q} integrable hierarchy via the resonance transformations, which are in turn fixed by conformal selection rules. One of the main problems in this approach is to choose the solution of the Douglas string equation that is relevant for MLG. The appropriate solution was recently found using connection with the Frobenius manifolds. We use this solution to investigate three- and four-point correlators in the unitary MLG models. We find an agreement with the results of the original approach in the region of the parameters where both methods are applicable. In addition, we find that only part of the selection rules can be satisfied using the resonance transformations. The physical meaning of the nonzero correlators, which before coupling to Liouville gravity are forbidden by the selection rules, and also the modification of the dual formulation that takes this effect into account remains to be found.
Classical geometry from the quantum Liouville theory
Hadasz, Leszek; Jaskólski, Zbigniew; Piaţek, Marcin
2005-09-01
Zamolodchikov's recursion relations are used to analyze the existence and approximations to the classical conformal block in the case of four parabolic weights. Strong numerical evidence is found that the saddle point momenta arising in the classical limit of the DOZZ quantum Liouville theory are simply related to the geodesic length functions of the hyperbolic geometry on the 4-punctured Riemann sphere. Such relation provides new powerful methods for both numerical and analytical calculations of these functions. The consistency conditions for the factorization of the 4-point classical Liouville action in different channels are numerically verified. The factorization yields efficient numerical methods to calculate the 4-point classical action and, by the Polyakov conjecture, the accessory parameters of the Fuchsian uniformization of the 4-punctured sphere.
Classical geometry from the quantum Liouville theory
Hadasz, Leszek [M. Smoluchowski Institute of Physics, Jagellonian University, Reymonta 4, 30-059 Cracow (Poland)]. E-mail: hadasz@th.if.uj.edu.pl; Jaskolski, Zbigniew [Institute of Theoretical Physics, University of WrocIaw, pl. M. Borna, 950-204 WrocIaw (Poland)]. E-mail: jask@ift.uni.wroc.pl; Piatek, Marcin [Institute of Theoretical Physics, University of WrocIaw, pl. M. Borna, 950-204 WrocIaw (Poland)]. E-mail: piatek@ift.uni.wroc.pl
2005-09-26
Zamolodchikov's recursion relations are used to analyze the existence and approximations to the classical conformal block in the case of four parabolic weights. Strong numerical evidence is found that the saddle point momenta arising in the classical limit of the DOZZ quantum Liouville theory are simply related to the geodesic length functions of the hyperbolic geometry on the 4-punctured Riemann sphere. Such relation provides new powerful methods for both numerical and analytical calculations of these functions. The consistency conditions for the factorization of the 4-point classical Liouville action in different channels are numerically verified. The factorization yields efficient numerical methods to calculate the 4-point classical action and, by the Polyakov conjecture, the accessory parameters of the Fuchsian uniformization of the 4-punctured sphere.
Classical geometry from the quantum Liouville theory
Hadasz, Leszek; Jaskolski, Zbigniew; Piatek, Marcin
2005-01-01
Zamolodchikov's recursion relations are used to analyze the existence and approximations to the classical conformal block in the case of four parabolic weights. Strong numerical evidence is found that the saddle point momenta arising in the classical limit of the DOZZ quantum Liouville theory are simply related to the geodesic length functions of the hyperbolic geometry on the 4-punctured Riemann sphere. Such relation provides new powerful methods for both numerical and analytical calculations of these functions. The consistency conditions for the factorization of the 4-point classical Liouville action in different channels are numerically verified. The factorization yields efficient numerical methods to calculate the 4-point classical action and, by the Polyakov conjecture, the accessory parameters of the Fuchsian uniformization of the 4-punctured sphere
Unitarity relations in c=1 Liouville theory
Lowe, D.A.
1992-01-01
In this paper, the authors consider the S-matrix of c = 1 Liouville theory with vanishing cosmological constant. The authors examine some of the constraints imposed by unitarity. These completely determine (N,2) amplitudes at tree level in terms of the (N,1) amplitudes when the plus tachyon momenta take generic values. A surprising feature of the matrix model results is the lack of particle creation branch cuts in the higher genus amplitudes. In fact, the authors show that the naive field theory limit of Liouville theory would predict such branch cuts. However, unitarity in the full string theory ensures that such cuts do not appear in genus one (N,1) amplitudes. The authors conclude with some comments about the genus one (N,2) amplitudes
L-1 constraint in Liouville gravity
Kitazawa, Y.
1992-01-01
In this paper, the authors study recursion relations among the amplitudes which involve discrete states in c = 1 Liouville gravity on the sphere. The authors find that the spin J = 1/2 discrete state gives rise to the L -1 type recursion relation. Multiple point correlation functions are determined recursively from fewer point functions by this recursion relation. The authors further point out that the analogs of J = 1/2 state exist in c -1 type recursion relation
Teschner, J.
2010-05-01
It was in particular recently argued that the gauge theory in the presence of a certain one-parameter deformation can at low energies effectively be described in terms the quantization of an algebraically integrable system, which is canonically associated to this theory. It seems, however, that the deeper reasons for this relationship between a two- and a fourdimensional theory remain to be understood. A clue in this direction may be seen in the fact that the instanton partition functions which represent the building blocks of the partition functions are obtained by specializing a two-parameter family Z(a,ε 1 ,ε 2 ;q) of instanton partition functions. These functions were identified with the conformal blocks of Liouville theory. This indicates that the relationship between certain gauge theories and Liouville theory involves in particular a two-parametric deformation of the algebraically integrable model associated to the gauge theories on R 4 which ultimately produces Liouville theory as a result. One of my intentions in this paper is to clarify in which sense this point of view is correct. Another piece of motivation comes from relations between fourdimensional gauge theories and the geometric Langlands correspondence. The author feels that the mentioned relations between gauge theory and conformal field theory offer new clues in this regard. It is therefore my second main aim to clarify the relations between the quantization of the Hitchin system, the geometric Langlands correspondence and the Liouville conformal field theory. (orig.)
Teschner, J. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany). Gruppe Theorie
2010-05-15
It was in particular recently argued that the gauge theory in the presence of a certain one-parameter deformation can at low energies effectively be described in terms the quantization of an algebraically integrable system, which is canonically associated to this theory. It seems, however, that the deeper reasons for this relationship between a two- and a fourdimensional theory remain to be understood. A clue in this direction may be seen in the fact that the instanton partition functions which represent the building blocks of the partition functions are obtained by specializing a two-parameter family Z(a,{epsilon}{sub 1},{epsilon}{sub 2};q) of instanton partition functions. These functions were identified with the conformal blocks of Liouville theory. This indicates that the relationship between certain gauge theories and Liouville theory involves in particular a two-parametric deformation of the algebraically integrable model associated to the gauge theories on R{sup 4} which ultimately produces Liouville theory as a result. One of my intentions in this paper is to clarify in which sense this point of view is correct. Another piece of motivation comes from relations between fourdimensional gauge theories and the geometric Langlands correspondence. The author feels that the mentioned relations between gauge theory and conformal field theory offer new clues in this regard. It is therefore my second main aim to clarify the relations between the quantization of the Hitchin system, the geometric Langlands correspondence and the Liouville conformal field theory. (orig.)
A Note on Upper Tail Behavior of Liouville Copulas
Lei Hua
2016-11-01
Full Text Available The family of Liouville copulas is defined as the survival copulas of multivariate Liouville distributions, and it covers the Archimedean copulas constructed by Williamson’s d-transform. Liouville copulas provide a very wide range of dependence ranging from positive to negative dependence in the upper tails, and they can be useful in modeling tail risks. In this article, we study the upper tail behavior of Liouville copulas through their upper tail orders. Tail orders of a more general scale mixture model that covers Liouville distributions is first derived, and then tail order functions and tail order density functions of Liouville copulas are derived. Concrete examples are given after the main results.
Noncritical String Liouville Theory and Geometric Bootstrap Hypothesis
Hadasz, Leszek; Jaskólski, Zbigniew
The applications of the existing Liouville theories for the description of the longitudinal dynamics of noncritical Nambu-Goto string are analyzed. We show that the recently developed DOZZ solution to the Liouville theory leads to the cut singularities in tree string amplitudes. We propose a new version of the Polyakov geometric approach to Liouville theory and formulate its basic consistency condition — the geometric bootstrap equation. Also in this approach the tree amplitudes develop cut singularities.
Liouville theory with a central charge less than one
Ribault, Sylvain [CEA Saclay, Institut de Physique Théorique,F-91191, Gif-sur-Yvette (France); Santachiara, Raoul [LPTMS, Université Paris Sud,15 rue Georges Clemenceau, Orsay (France)
2015-08-21
We determine the spectrum and correlation functions of Liouville theory with a central charge less than (or equal) one. This completes the definition of Liouville theory for all complex values of the central charge. The spectrum is always spacelike, and there is no consistent timelike Liouville theory. We also study the non-analytic conformal field theories that exist at rational values of the central charge. Our claims are supported by numerical checks of crossing symmetry. We provide Python code for computing Virasoro conformal blocks, and correlation functions in Liouville theory and (generalized) minimal models.
Symmetry-adapted Liouville space. Pt. 7
Temme, F.P.
1990-01-01
In examining nuclear spin dynamics of NMR spin clusters in density operator/generalized torque formalisms over vertical strokekqv>> operator bases of Liouville space, it is necessary to consider the symmetry mappings and carrier spaces under a specialized group for such (k i = 1) nuclear spin clusters. The SU2 X S n group provides the essential mappings and the form of H carrier space, which allows one to: (a) draw comparisons with Hilbert space duality, and (b) outline the form of the Coleman-Kotani genealogical hierarchy under induced S n -symmetry. (orig.)
On Multi-Point Liouville Field Theory
Zarrinkamar, S.; Rajabi, A. A.; Hassanabadi, H.
2013-01-01
In many cases, the classical or semi-classical Liouville field theory appears in the form of Fuchsian or Riemann differential equations whose solutions cannot be simply found, or at least require a comprehensive knowledge on analytical techniques of differential equations of mathematical physics. Here, instead of other cumbersome methodologies such as treating with the Heun functions, we use the quasi-exact ansatz approach and thereby solve the so-called resulting two- and three-point differential equations in a very simple manner. We apply the approach to two recent papers in the field. (author)
Dressing symmetry of the uniformization solution of Liouville equation
Shen Jianmin.
1994-10-01
In this paper, the relations between monodromy group and dressing group for Liouville equation in uniformization theorem are discussed. The representation of monodromy transformation, acting on the chiral components of the solution of Liouville equation, is obtained. The non-trivial exchange algebra for monodromy transformation is calculated. (author). 14 refs
Bosonic Liouville string theory in conformal gauge
Schnittger, J.
1990-01-01
The object of the present thesis are the so-called Liouville theories as possibilities for the consistent formulation of string theories beyond the critical dimension. First we discuss the general framework for the quantum theory and explain common properties and differences of different approaches. These considerations lead us to the main demand of the thesis, the formulation of a unified quantum theory for open and closed strings. Of central importance is thereby the construction of the field operator for the Weyl degree of freedom on a suitably defined Hilbert space, so that also in the quantum theory locality and Hermiticity of the Energy-Momentum tensor are respected. In the study of the allowed ground states of the Hilbert space an interesting particularity in comparison to the structure of usual conformal field theories comes across, the importance and consequences of which we intensively study. In the last section we enter the consistence of the theory on the 1-loop level and come then to the final consideration, where we indicate some still open questions of the Liouville theory. (orig.) [de
The Solution Construction of Heterotic Super-Liouville Model
Yang, Zhan-Ying; Zhen, Yi
2001-12-01
We investigate the heterotic super-Liouville model on the base of the basic Lie super-algebra Osp(1|2).Using the super extension of Leznov-Saveliev analysis and Drinfeld-Sokolov linear system, we construct the explicit solution of the heterotic super-Liouville system in component form. We also show that the solutions are local and periodic by calculating the exchange relation of the solution. Finally starting from the action of heterotic super-Liouville model, we obtain the conserved current and conserved charge which possessed the BRST properties.
Two- and three-point functions in Liouville theory
Dorn, H.; Otto, H.J.
1994-04-01
Based on our generalization of the Goulian-Li continuation in the power of the 2D cosmological term we construct the two and three-point correlation functions for Liouville exponentials with generic real coefficients. As a strong argument in favour of the procedure we prove the Liouville equation of motion on the level of three-point functions. The analytical structure of the correlation functions as well as some of its consequences for string theory are discussed. This includes a conjecture on the mass shell condition for excitations of noncritical strings. We also make a comment concerning the correlation functions of the Liouville field itself. (orig.)
H{sup +}{sub 3} WZNW model from Liouville field theory
Hikida, Y.; Schomerus, V.
2007-06-15
There exists an intriguing relation between genus zero correlation functions in the H{sup +}{sub 3} WZNW model and in Liouville field theory. This was found by Ribault and Teschner based in part on earlier ideas by Stoyanovsky. We provide a path integral derivation of the correspondence and then use our new approach to generalize the relation to surfaces of arbitrary genus g. In particular we determine the correlation functions of N primary fields in the WZNW model explicitly through Liouville correlators with N+2g-2 additional insertions of certain degenerate fields. The paper concludes with a list of interesting further extensions and a few comments on the relation to the geometric Langlands program. (orig.)
An inverse Sturm–Liouville problem with a fractional derivative
Jin, Bangti; Rundell, William
2012-01-01
In this paper, we numerically investigate an inverse problem of recovering the potential term in a fractional Sturm-Liouville problem from one spectrum. The qualitative behaviors of the eigenvalues and eigenfunctions are discussed, and numerical
The exchange algebra for Liouville theory on punctured Riemann sphere
Shen Jianmin; Sheng Zhengmao
1991-11-01
We consider in this paper the classical Liouville field theory on the Riemann sphere with n punctures. In terms of the uniformization theorem of Riemann surface, we show explicitly the classical exchange algebra (CEA) for the chiral components of the Liouville fields. We find that the matrice which dominate the CEA is related to the symmetry of the Lie group SL(n) in a nontrivial manner with n>3. (author). 10 refs
Liouville theory and uniformization of four-punctured sphere
Hadasz, Leszek; Jaskolski, Zbigniew
2006-01-01
Few years ago Zamolodchikov and Zamolodchikov proposed an expression for the 4-point classical Liouville action in terms of the 3-point actions and the classical conformal block. In this paper we develop a method of calculating the uniformizing map and the uniformizing group from the classical Liouville action on n-punctured sphere and discuss the consequences of Zamolodchikovs conjecture for an explicit construction of the uniformizing map and the uniformizing group for the sphere with four ...
Defects and permutation branes in the Liouville field theory
Sarkissian, Gor
2009-01-01
The defects and permutation branes for the Liouville field theory are considered. By exploiting cluster condition, equations satisfied by permutation branes and defects reflection amplitudes are obtained. It is shown that two types of solutions exist, discrete and continuous families.......The defects and permutation branes for the Liouville field theory are considered. By exploiting cluster condition, equations satisfied by permutation branes and defects reflection amplitudes are obtained. It is shown that two types of solutions exist, discrete and continuous families....
Liouville equation of relativistic charged fermion
Wang Renchuan; Zhu Dongpei; Huang Zhuoran; Ko Che-ming
1991-01-01
As a form of density martrix, the Wigner function is the distribution in quantum phase space. It is a 2 X 2 matrix function when one uses it to describe the non-relativistic fermion. While describing the relativistic fermion, it is usually represented by 4 x 4 matrix function. In this paper authors obtain a Wigner function for the relativistic fermion in the form of 2 x 2 matrix, and the Liouville equation satisfied by the Wigner function. this equivalent to the Dirac equation of changed fermion in QED. The equation is also equivalent to the Dirac equation in the Walecka model applied to the intermediate energy nuclear collision while the nucleon is coupled to the vector meson only (or taking mean field approximation for the scalar meson). Authors prove that the 2 x 2 Wigner function completely describes the quantum system just the same as the relativistic fermion wave function. All the information about the observables can be obtained with above Wigner function
Remarks on the Liouville type results for the compressible Navier–Stokes equations in RN
Chae, Dongho
2012-01-01
In this paper, we prove Liouville type result for the stationary solutions to the compressible Navier–Stokes equations (NS) and the compressible Navier–Stokes–Poisson (NSP) equations and in R N , N ≥ 2. Assuming suitable integrability and the uniform boundedness conditions for the solutions we are led to the conclusion that v = 0. In the case of (NS) we deduce that the similar integrability conditions imply v = 0 and ρ = constant on R N . This shows that if we impose the the non-vacuum boundary condition at spatial infinity for (NS), v → 0 and ρ → ρ ∞ > 0, then v = 0, ρ = ρ ∞ are the solutions
Minimal Liouville gravity correlation numbers from Douglas string equation
Belavin, Alexander; Dubrovin, Boris; Mukhametzhanov, Baur
2014-01-01
We continue the study of (q,p) Minimal Liouville Gravity with the help of Douglas string equation. We generalize the results of http://dx.doi.org/10.1016/0550-3213(91)90548-Chttp://dx.doi.org/10.1088/1751-8113/42/30/304004, where Lee-Yang series (2,2s+1) was studied, to (3,3s+p 0 ) Minimal Liouville Gravity, where p 0 =1,2. We demonstrate that there exist such coordinates τ m,n on the space of the perturbed Minimal Liouville Gravity theories, in which the partition function of the theory is determined by the Douglas string equation. The coordinates τ m,n are related in a non-linear fashion to the natural coupling constants λ m,n of the perturbations of Minimal Lioville Gravity by the physical operators O m,n . We find this relation from the requirement that the correlation numbers in Minimal Liouville Gravity must satisfy the conformal and fusion selection rules. After fixing this relation we compute three- and four-point correlation numbers when they are not zero. The results are in agreement with the direct calculations in Minimal Liouville Gravity available in the literature http://dx.doi.org/10.1103/PhysRevLett.66.2051http://dx.doi.org/10.1007/s11232-005-0003-3http://dx.doi.org/10.1007/s11232-006-0075-8
Gorbachev, D V; Ivanov, V I
2015-01-01
Gauss and Markov quadrature formulae with nodes at zeros of eigenfunctions of a Sturm-Liouville problem, which are exact for entire functions of exponential type, are established. They generalize quadrature formulae involving zeros of Bessel functions, which were first designed by Frappier and Olivier. Bessel quadratures correspond to the Fourier-Hankel integral transform. Some other examples, connected with the Jacobi integral transform, Fourier series in Jacobi orthogonal polynomials and the general Sturm-Liouville problem with regular weight are also given. Bibliography: 39 titles
Inequalities among eigenvalues of Sturm–Liouville problems
Kong Q
1999-01-01
Full Text Available There are well-known inequalities among the eigenvalues of Sturm–Liouville problems with periodic, semi-periodic, Dirichlet and Neumann boundary conditions. In this paper, for an arbitrary coupled self-adjoint boundary condition, we identify two separated boundary conditions corresponding to the Dirichlet and Neumann conditions in the classical case, and establish analogous inequalities. It is also well-known that the lowest periodic eigenvalue is simple; here we prove a similar result for the general case. Moreover, we show that the algebraic and geometric multiplicities of the eigenvalues of self-adjoint regular Sturm–Liouville problems with coupled boundary conditions are the same. An important step in our approach is to obtain a representation of the fundamental solutions for sufficiently negative values of the spectral parameter. Our approach yields the existence and boundedness from below of the eigenvalues of arbitrary self-adjoint regular Sturm–Liouville problems without using operator theory.
Dynamics and constraints of the Dissipative Liouville Cosmology
Basilakos, Spyros; Mitsou, Vasiliki A; Plionis, Manolis
2012-01-01
In this article we investigate the properties of the FLRW flat cosmological models in which the cosmic expansion of the Universe is affected by a dilaton dark energy (Liouville scenario). In particular, we perform a detailed study of these models in the light of the latest cosmological data, which serves to illustrate the phenomenological viability of the new dark energy paradigm as a serious alternative to the traditional scalar field approaches. By performing a joint likelihood analysis of the recent supernovae type Ia data (SNIa), the differential ages of passively evolving galaxies, and the Baryonic Acoustic Oscillations (BAOs) traced by the Sloan Digital Sky Survey (SDSS), we put tight constraints on the main cosmological parameters. Furthermore, we study the linear matter fluctuation field of the above Liouville cosmological models. In this framework, we compare the observed growth rate of clustering measured from the optical galaxies with those predicted by the current Liouville models. Performing vari...
A covariant canonical description of Liouville field theory
Papadopoulos, G.; Spence, B.
1993-03-01
This paper presents a new parametrisation of the space of solutions of Liouville field theory on a cylinder. In this parametrisation, the solutions are well-defined and manifestly real functions over all space-time and all of parameter space. It is shown that the resulting covariant phase space of the Liouville theory is diffeomorphic to the Hamiltonian one, and to the space of initial data of the theory. The Poisson brackets are derived and shown to be those of the co-tangent bundle of the loop group of the real line. Using Hamiltonian reduction, it is shown that this covariant phase space formulation of Liouville theory may also be obtained from the covariant phase space formulation of the Wess-Zumino-Witten model. 19 refs
Similarities of discrete and continuous Sturm-Liouville problems
Kazem Ghanbari
2007-12-01
Full Text Available In this paper we present a study on the analogous properties of discrete and continuous Sturm-Liouville problems arising in matrix analysis and differential equations, respectively. Green's functions in both cases have analogous expressions in terms of the spectral data. Most of the results associated to inverse problems in both cases are identical. In particular, in both cases Weyl's m-function determines the Sturm-Liouville operators uniquely. Moreover, the well known Rayleigh-Ritz Theorem in linear algebra can be proved by using the concept of Green's function in discrete case.
Liouville theory and uniformization of four-punctured sphere
Hadasz, Leszek; Jaskólski, Zbigniew
2006-08-01
A few years ago Zamolodchikov and Zamolodchikov proposed an expression for the four-point classical Liouville action in terms of the three-point actions and the classical conformal block [Nucl. Phys. B 477, 577 (1996)]. In this paper we develop a method of calculating the uniformizing map and the uniformizing group from the classical Liouville action on n-punctured sphere and discuss the consequences of Zamolodchikovs conjecture for an explicit construction of the uniformizing map and the uniformizing group for the sphere with four punctures.
The local structure of a Liouville vector field
Ciriza, E.
1990-05-01
In this work we investigate the local structure of a Liouville vector field ξ of a Kaehler manifold (P,Ω) which vanishes on an isotropic submanifold Q of P. Some of the eigenvalues of its linear part at the singular points are zero and the remaining ones are in resonance. We show that there is a C 1 -smooth linearizing conjugation between the Liouville vector field ξ and its linear part. To do this we construct Darboux coordinates adapted to the unstable foliation which is provided by the Centre Manifold Theorem. We then apply recent linearization results due to G. Sell. (author). 11 refs
Theory of a higher-order Sturm-Liouville equation
Kozlov, Vladimir
1997-01-01
This book develops a detailed theory of a generalized Sturm-Liouville Equation, which includes conditions of solvability, classes of uniqueness, positivity properties of solutions and Green's functions, asymptotic properties of solutions at infinity. Of independent interest, the higher-order Sturm-Liouville equation also proved to have important applications to differential equations with operator coefficients and elliptic boundary value problems for domains with non-smooth boundaries. The book addresses graduate students and researchers in ordinary and partial differential equations, and is accessible with a standard undergraduate course in real analysis.
Fatima G. Khushtova
2016-03-01
Full Text Available In this paper Cauchy problem for a parabolic equation with Bessel operator and with Riemann–Liouville partial derivative is considered. The representation of the solution is obtained in terms of integral transform with Wright function in the kernel. It is shown that when this equation becomes the fractional diffusion equation, obtained solution becomes the solution of Cauchy problem for the corresponding equation. The uniqueness of the solution in the class of functions that satisfy the analogue of Tikhonov condition is proved.
On the singular Sturm-Liouville problems that have the same spectrum
Gulsen, Tuba [Department of Mathematics, Firat University, 23119, Elazig (Turkey); Ulusoy, Ismail [Department of Mathematics, Adiyaman University, 02040,Adiyaman (Turkey)
2016-06-08
The problem of efficaciously constucting the potential q (x) and the numbers h and H was solved in [1]. Trubowitz [2] investigated the isospectrality problem which have the same spectrum with other same type of problems. Then Jodeit and Levitan [3] considered this problem with a different approach, based on transmutation operators and integral equation. In this work, we discussed this problem for singular Sturm-Liouville operator and obtained some important formulas for the number H, the potential q (x) and the norming constants α{sub n}.
The Interaction of Physics, Mechanics and Mathematics in Joseph Liouville's Research
Lützen, Jesper
2013-01-01
Som for mange af hans samtidige var fysik og mekanik en stor inspirationskilde for Liouville's matematiske forskning. Laplaces tilgang til fysik var oprindelsen til Liouvilles teori om differentiation af vilkårlig orden, Kelvins elektrostatiske forskning var oprindelsen til Liouvilles sætning om ...
Quantization of bosonic closed strings and the Liouville model
Paycha, S.
1988-01-01
The author shows that by means of a reasonable interpretation of the Lebesgue measure describing the partition function the quantization of closed bosonic strings described by compact surfaces of genus p>1 can be related to that of the Liouville model. (HSI)
Discontinuous Sturm-Liouville Problems with Eigenvalue Dependent Boundary Condition
Amirov, R. Kh., E-mail: emirov@cumhuriyet.edu.tr; Ozkan, A. S., E-mail: sozkan@cumhuriyet.edu.tr [Cumhuriyet University, Department of Mathematics Faculty of Art and Science (Turkey)
2014-12-15
In this study, an inverse problem for Sturm-Liouville differential operators with discontinuities is studied when an eigenparameter appears not only in the differential equation but it also appears in the boundary condition. Uniqueness theorems of inverse problems according to the Prüfer angle, the Weyl function and two different eigenvalues sets are proved.
The many faces of the quantum Liouville exponentials
Gervais, Jean-Loup; Schnittger, Jens
1994-01-01
First, it is proven that the three main operator approaches to the quantum Liouville exponentials—that is the one of Gervais-Neveu (more recently developed further by Gervais), Braaten-Curtright-Ghandour-Thorn, and Otto-Weigt—are equivalent since they are related by simple basis transformations in the Fock space of the free field depending upon the zero-mode only. Second, the GN-G expressions for quantum Liouville exponentials, where the U q( sl(2)) quantum-group structure is manifest, are shown to be given by q-binomial sums over powers of the chiral fields in the J = {1}/{2} representation. Third, the Liouville exponentials are expressed as operator tau functions, whose chiral expansion exhibits a q Gauss decomposition, which is the direct quantum analogue of the classical solution of Leznov and Saveliev. It involves q exponentials of quantum-group generators with group "parameters" equal to chiral components of the quantum metric. Fourth, we point out that the OPE of the J = {1}/{2} Liouville exponential provides the quantum version of the Hirota bilinear equation.
Selfadjointness of the Liouville operator for infinite classical systems
Marchioro, C [Camerino Univ. (Italy). Istituto di Matematica; Pellegrinotti, A [Rome Univ. (Italy). Istituto di Matematica; Pulvirenti, M [Ancona Univ. (Italy). Istituto di Matematica
1978-02-01
We study some properties of the time evolution of an infinite one dimensional hard core system with singular two body interaction. We show that the Liouville operator is essentially antiselfadjoint an the algebra of local observables. Some consequences of this result are also discussed.
An efficient method for solving fractional Sturm-Liouville problems
Al-Mdallal, Qasem M.
2009-01-01
The numerical approximation of the eigenvalues and the eigenfunctions of the fractional Sturm-Liouville problems, in which the second order derivative is replaced by a fractional derivative, is considered. The present results can be implemented on the numerical solution of the fractional diffusion-wave equation. The results show the simplicity and efficiency of the numerical method.
Selfadjointness of the Liouville operator for infinite classical systems
Marchioro, C.; Pellegrinotti, A.; Pulvirenti, M.
1978-01-01
We study some properties of the time evolution of an infinite one dimensional hard core system with singular two body interaction. We show that the Liouville operator is essentially antiselfadjoint an the algebra of local observables. Some consequences of this result are also discussed. (orig.) [de
Weyl transforms associated with the Riemann-Liouville operator
N. B. Hamadi
2006-01-01
Full Text Available For the Riemann-Liouville transform ℛα, α∈ℝ+, associated with singular partial differential operators, we define and study the Weyl transforms Wσ connected with ℛα, where σ is a symbol in Sm, m∈ℝ. We give criteria in terms of σ for boundedness and compactness of the transform Wσ.
Liouville equation with boundary conditions derived from classical strings
Marnelius, R.
1983-01-01
It is shown in terms of the classical string theory that a breaking of the Weyl invariance necessarily requires the Liouville equation for the variable phi=1n rho, where rho is the variable that appears in the conformal gauge gsub(α#betta#)=rhoetasub(α#betta#). Appropriate boundary conditions on phi for open and closed strings are then derived. (orig.)
Weyl and Riemann-Liouville multifractional Ornstein-Uhlenbeck processes
Lim, S C; Teo, L P
2007-01-01
This paper considers two new multifractional stochastic processes, namely the Weyl multifractional Ornstein-Uhlenbeck process and the Riemann-Liouville multifractional Ornstein-Uhlenbeck process. Basic properties of these processes such as locally self-similar property and Hausdorff dimension are studied. The relationship between the multifractional Ornstein-Uhlenbeck processes and the corresponding multifractional Brownian motions is established
Noncanonical Hamiltonian methods in plasma dynamics
Kaufman, A.N.
1981-11-01
A Hamiltonian approach to plasma dynamics has numerous advantages over equivalent formulations which ignore the underlying Hamiltonian structure. In addition to achieving a deeper understanding of processes, Hamiltonian methods yield concise expressions (such as the Kubo form for linear susceptibility), greatly shorten the length of calculations, expose relationships (such as between the ponderomotive Hamiltonian and the linear susceptibility), determine invariants in terms of symmetry operations, and cover situations of great generality. In addition, they yield the Poincare invariants, in particular Liouville volume and adiabatic actions
Signature and Pathophysiology of Non-canonical Pores in Voltage-Dependent Cation Channels.
Held, Katharina; Voets, Thomas; Vriens, Joris
2016-01-01
Opening and closing of voltage-gated cation channels allows the regulated flow of cations such as Na(+), K(+), and Ca(2+) across cell membranes, which steers essential physiological processes including shaping of action potentials and triggering Ca(2+)-dependent processes. Classical textbooks describe the voltage-gated cation channels as membrane proteins with a single, central aqueous pore. In recent years, however, evidence has accumulated for the existence of additional ion permeation pathways in this group of cation channels, distinct from the central pore, which here we collectively name non-canonical pores. Whereas the first non-canonical pores were unveiled only after making specific point mutations in the voltage-sensor region of voltage-gated Na(+) and K(+) channels, recent evidence indicates that they may also be functional in non-mutated channels. Moreover, several channelopathies have been linked to mutations that cause the appearance of a non-canonical ion permeation pathway as a new pathological mechanism. This review provides an integrated overview of the biophysical properties of non-canonical pores described in voltage-dependent cation channels (KV, NaV, Cav, Hv1, and TRPM3) and of the (patho)physiological impact of opening of such pores.
Relations between canonical and non-canonical inflation
Gwyn, Rhiannon [Max-Planck-Institut fuer Gravitationsphysik (Albert-Einstein-Institut), Potsdam (Germany); Rummel, Markus [Hamburg Univ. (Germany). 2. Inst. fuer Theoretische Physik; Westphal, Alexander [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany). Theory Group
2012-12-15
We look for potential observational degeneracies between canonical and non-canonical models of inflation of a single field {phi}. Non-canonical inflationary models are characterized by higher than linear powers of the standard kinetic term X in the effective Lagrangian p(X,{phi}) and arise for instance in the context of the Dirac-Born-Infeld (DBI) action in string theory. An on-shell transformation is introduced that transforms non-canonical inflationary theories to theories with a canonical kinetic term. The 2-point function observables of the original non-canonical theory and its canonical transform are found to match in the case of DBI inflation.
Distribution of energy levels of quantum free particle on the Liouville surface and trace formulae
Bleher, P.M.; Kosygin, D.V.; Sinai, Y.G.
1995-01-01
We consider the Weyl asymptotic formula [{E n ≤R 2 }=Area Q.R 2 /(4π)+n(R), for eigenvalues of the Laplace-Beltrami operator on a two-dimensional torus Q with a Liouville metric which is in a sense the most general case of an integrable metric. We prove that if the surface Q is non-degenerate then the remainder term n(R) has the form n(R)=R 1/2 θ(R), where θ(R) is an almost periodic function of the Besicovitch class B 1 , and the Fourier amplitudes and the Fourier frequencies of θ(R) can be expressed via lengths of closed geodesics on Q and other simple geometric characteristics of these geodesics. We prove then that if the surface Q is generic then the limit distribution of θ(R) has a density p(t), which is an entire function of t possessing an asymptotics on a real line, logp(t)∝-C ± t 4 as t→±∞. An explicit expression for the Fourier transform of p(t) via Fourier amplitudes of θ(R) is also given. We obtain the analogue of the Guillemin-Duistermaat trace formula for the Liouville surfaces and discuss its accuracy. (orig.)
Brief comments on Jackiw-Teitelboim gravity coupled to Liouville theory
Giribet, Gaston E
2003-06-07
The Jackiw-Teitelboim gravity with non-vanishing cosmological constant coupled to Liouville theory is considered as a non-critical string on d dimensional flat spacetime. In terms of this interpretation of the model as a consistent string theory, it is discussed as to how the presence of a cosmological constant leads one to consider additional constraints on the parameters of the theory, even though the conformal anomaly is independent of the cosmological constant. The constraints agree with the necessary conditions required to ensure that the tachyon field turns out to be a primary prelogarithmic operator within the context of the worldsheet conformal field theory. Thus, the linearized tachyon field equation allows one to impose the diagonal condition for the interaction term. We analyse the neutralization of the Liouville mode induced by the coupling to the Jackiw-Teitelboim Lagrangian. The standard free field prescription leads one to obtain explicit expressions for three-point functions for the case of vanishing cosmological constant in terms of a product of Shapiro-Virasoro integrals; this fact is a consequence of the mentioned neutralization effect.
Generalized slow roll for noncanonical kinetic terms
Hu, Wayne
2011-01-01
We show that the generalized slow roll approach for calculating the power spectrum where the inflationary slow roll parameters are neither small nor slowly varying can be readily extended to models with noncanonical kinetic terms in the inflaton action. For example, rapid sound speed variations can arise in Dirac-Born-Infeld models with features in the warp factor leading to features in the power spectrum. Nonetheless there remains a single source function for deviations that is simply related to the power spectrum. Empirical constraints on this source function can be readily interpreted in the context of features in the inflaton potential or sound speed.
Extended Riemann-Liouville type fractional derivative operator with applications
Agarwal P.
2017-12-01
Full Text Available The main purpose of this paper is to introduce a class of new extended forms of the beta function, Gauss hypergeometric function and Appell-Lauricella hypergeometric functions by means of the modified Bessel function of the third kind. Some typical generating relations for these extended hypergeometric functions are obtained by defining the extension of the Riemann-Liouville fractional derivative operator. Their connections with elementary functions and Fox’s H-function are also presented.
Adomian decomposition method for nonlinear Sturm-Liouville problems
Sennur Somali
2007-09-01
Full Text Available In this paper the Adomian decomposition method is applied to the nonlinear Sturm-Liouville problem-y" + y(tp=λy(t, y(t > 0, t ∈ I = (0, 1, y(0 = y(1 = 0, where p > 1 is a constant and λ > 0 is an eigenvalue parameter. Also, the eigenvalues and the behavior of eigenfuctions of the problem are demonstrated.
An inverse Sturm–Liouville problem with a fractional derivative
Jin, Bangti
2012-05-01
In this paper, we numerically investigate an inverse problem of recovering the potential term in a fractional Sturm-Liouville problem from one spectrum. The qualitative behaviors of the eigenvalues and eigenfunctions are discussed, and numerical reconstructions of the potential with a Newton method from finite spectral data are presented. Surprisingly, it allows very satisfactory reconstructions for both smooth and discontinuous potentials, provided that the order . α∈. (1,. 2) of fractional derivative is sufficiently away from 2. © 2012 Elsevier Inc.
Heisenberg Uncertainty Relation in Quantum Liouville Equation
Davide Valenti
2009-01-01
Fourier transform of the density matrix ρ(z,y,t = ψ∗(z,tψ(y,t. We find again that the variances of x and v obtained by using ρ(z, y,t are respectively equal to the variances of X^ and P^ calculated in ψ(x,t. Finally we introduce the matrix ∥Ann′(t∥ and we show that a generic square-integrable function g(x,v,t can be written as Fourier transform of a density matrix, provided that the matrix ∥Ann′(t∥ is diagonalizable.
Liouville's equation and radiative acceleration in general relativity
Keane, A.J.
1999-01-01
spacetimes. In the case of the Schwarzschild spacetime we find a solution of the Liouville equation which is invariant under the Killing vector symmetries and we adopt this as our model radiation field. Once a particular solution has been chosen the radiation field has been specified completely throughout the spacetime. In chapter 4 we investigate null and timelike geodesics in the Schwarzschild spacetime. Studying the null geodesics allows us to determine the viewing angles, that is, the (semi) angular size of the compact object as viewed by a stationary observer at an arbitrary point in the spacetime. The timelike geodesics are the trajectories of the (massive) test particles subject to no external radiation force and therefore constitute a limiting case of the radiative acceleration results. Given the radiation field one can calculate the radiation pressure force and because of special relativistic effects, the radiation pressure force experienced by the particle becomes velocity dependent. In chapter 5 we integrate the equations of motion for the case of purely radial motion in the Thomson limit. In this case we can obtain a tractable analytic expression for the solution in phase space, which can be compared with the high frequency case. In this chapter we consider a relativistic critical luminosity of a compact object, i.e. a relativistic Eddington luminosity. We also introduce and discuss terminal velocities and saturation velocities associated with a particular compact object. The terminal velocity of a radiation field is the 3-velocity required to annul the radiation pressure force on the test particle, neglecting the influence of any gravitational force on the particle. The saturation velocity is defined in the same way except the gravitational force is included. The saturation velocities are of course highly frequency dependent and provide important information about the dynamics of the system. In chapter 6 we discuss the Compton differential cross-section for
Schramm-Loewner evolution and Liouville quantum gravity.
Duplantier, Bertrand; Sheffield, Scott
2011-09-23
We show that when two boundary arcs of a Liouville quantum gravity random surface are conformally welded to each other (in a boundary length-preserving way) the resulting interface is a random curve called the Schramm-Loewner evolution. We also develop a theory of quantum fractal measures (consistent with the Knizhnik-Polyakov-Zamolochikov relation) and analyze their evolution under conformal welding maps related to Schramm-Loewner evolution. As an application, we construct quantum length and boundary intersection measures on the Schramm-Loewner evolution curve itself.
Classical and quantum Liouville theory on the Riemann sphere with n>3 punctures (III)
Shen Jianmin; Sheng Zhengmao; Wang Zhonghua
1992-02-01
We study the Classical and Quantum Liouville theory on the Riemann sphere with n>3 punctures. We get the quantum exchange algebra relations between the chiral components in the Liouville theory from our assumption on the principle of quantization. (author). 5 refs
Theoretical analysis of noncanonical base pairing interactions in ...
PRAKASH KUMAR
Noncanonical base pairs in RNA have strong structural and functional implications but are currently not considered ..... Full optimizations of the systems were also carried out using ... of the individual bases in the base pair through the equation.
M.G. Elsheikh
2013-10-01
Full Text Available The unbounded solution, at the points where the boundary conditions change, for a mixed Sturm–Liouville problem of the Dirichlet–Neumann type can be obtained using the method of the integral equation formulation. Since this formulation is usually reduced to an infinite algebraic system in which the unknowns are the Fourier coefficients of the unknown unbounded entity, a study of ℓp-solutions imposes itself concerning the influence of the truncation on such systems. This study is achieved and the well-known theorem on the ℓ2-solutions of the infinite algebraic systems is generalized.
Liouville and Painleve equations and Yang--Mills strings
Saclioglu, C.K.
1984-01-01
Stringlike solutions of the self-dual Yang--Mills equations (dimensionally reduced to R 2 ) are sought. A multistring Ansatz results in the sinh--Gordon and Liouville equations. According to a general theorem, the solutions must be either real and singular and have infinite action, or complex and nonsingular, with zero action. In the Liouville case, explicit arbitrarily separated n-string solutions of both classes are given. The magnetic flux for these solutions is found to be the Chern class of a Kaehler manifold, and it consequently assumes quantized values 4πn/e. The axisymmetric version of the sinh--Gordon is solved by the third Painleve transcendent P 3 , using the results on P 3 by Wu et al. [Phys. Rev. B 13, 316 (1976)] and McCoy et al. [J. Math. Phys. 18, 10 (1977)]. The axisymmetric case can be cast into the Ernst equation framework for the generation of further solutions. In the Appendix, the Euclideanized Ernst equation is shown to give self-dual Gibbons--Hawking gravitational instantons
WKB analysis of PT-symmetric Sturm–Liouville problems
Bender, Carl M; Jones, Hugh F
2012-01-01
Most studies of PT-symmetric quantum-mechanical Hamiltonians have considered the Schrödinger eigenvalue problem on an infinite domain. This paper examines the consequences of imposing the boundary conditions on a finite domain. As is the case with regular Hermitian Sturm–Liouville problems, the eigenvalues of the PT-symmetric Sturm–Liouville problem grow like n 2 for large n. However, the novelty is that a PT eigenvalue problem on a finite domain typically exhibits a sequence of critical points at which pairs of eigenvalues cease to be real and become complex conjugates of one another. For the potentials considered here this sequence of critical points is associated with a turning point on the imaginary axis in the complex plane. WKB analysis is used to calculate the asymptotic behaviours of the real eigenvalues and the locations of the critical points. The method turns out to be surprisingly accurate even at low energies. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘Quantum physics with non-Hermitian operators’. (paper)
The Sturm-Liouville spectrum problem: quartic oscillator case
Voros, Andre.
1982-11-01
The Sturm-Liouville eigenvalue problem given by the steady-state Schroedinger equation in quantum mechanics is considered on the real axis. There are, however, exact expressions available only for a harmonic oscillator (the Hermite equation); consequently, semi-classical asymptotic methods (in powers of the Planck's constant), which yield very good approximations, have been much studied analytically and as regards their relationships to geometrical optics. These methods relate the asymptotic form of the spectrum to the closed orbits of the Hamiltonian vector field of the function H(p,q) = p 2 + V(q) in the phase space R 2 . We seek to show that these supposedly approximate methods are in fact an exact way of solving the problem. The quartic oscillator, with V(q) = q 4 , is used as an example [fr
Isomonodromic tau-functions from Liouville conformal blocks
Iorgov, N.; Lisovyy, O.
2014-01-01
The goal of this note is to show that the Riemann-Hilbert problem to find multivalued analytic functions with SL(2,C)-valued monodromy on Riemann surfaces of genus zero with n punctures can be solved by taking suitable linear combinations of the conformal blocks of Liouville theory at c=1. This implies a similar representation for the isomonodromic tau-function. In the case n=4 we thereby get a proof of the relation between tau-functions and conformal blocks discovered in O. Gamayun, N. Iorgov, and O. Lisovyy (2012). We briefly discuss a possible application of our results to the study of relations between certain N=2 supersymmetric gauge theories and conformal field theory.
A quantum group approach to cL > 1 Liouville gravity
Suzuki, Takashi.
1995-03-01
A candidate of c L > 1 Liouville gravity is studied via infinite dimensional representations of U q sl(2, C) with q at a root of unity. We show that vertex operators in this Liouville theory are factorized into classical vertex operators and those which are constructed from finite dimensional representations of U q sl(2, C). Expressions of correlation functions and transition amplitudes are presented. We discuss about our results and find an intimate relation between our quantization of the Liouville theory and the geometric quantization of moduli space of Riemann surfaces. An interpretation of quantum space-time is also given within this formulation. (author)
Spectral theory of Sturm-Liouville differential operators: proceedings of the 1984 workshop
Kaper, H.G.; Zettl, A. (eds.)
1984-12-01
This report contains the proceedings of the workshop which was held at Argonne during the period May 14 through June 15, 1984. The report contains 22 articles, authored or co-authored by the participants in the workshop. Topics covered at the workshop included the asymptotics of eigenvalues and eigenfunctions; qualitative and quantitative aspects of Sturm-Liouville eigenvalue problems with discrete and continuous spectra; polar, indefinite, and nonselfadjoint Sturm-Liouville eigenvalue problems; and systems of differential equations of Sturm-Liouville type.
Hardy inequality and properties of the quasilinear Sturm-Liouville problem
Drábek, P.; Kufner, Alois
2007-01-01
Roč. 18, č. 1 (2007), s. 125-138 ISSN 1120-6330 Institutional research plan: CEZ:AV0Z10190503 Keywords : Hardy inequality * weighted spaces * Sturm-Liouville problem Subject RIV: BA - General Mathematics
Minimal Liouville gravity on the torus via the Douglas string equation
Spodyneiko, Lev
2015-01-01
In this paper we assume that the partition function in minimal Liouville gravity (MLG) obeys the Douglas string equation. This conjecture makes it possible to compute the torus correlation numbers in (3,p) MLG. We perform this calculation using also the resonance relations between the coupling constants in the KdV frame and in the Liouville frame. We obtain explicit expressions for the torus partition function and for the one- and two-point correlation numbers. (paper)
Ghulam Farid
2017-10-01
Full Text Available The aim of this paper is to obtain some more general fractional integral inequalities of Fejer Hadamard type for p-convex functions via Riemann-Liouville k-fractional integrals. Also in particular fractional inequalities for p-convex functions via Riemann-Liouville fractional integrals have been deduced.
Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.
Kevin Drew
Full Text Available Peptidomimetics are classes of molecules that mimic structural and functional attributes of polypeptides. Peptidomimetic oligomers can frequently be synthesized using efficient solid phase synthesis procedures similar to peptide synthesis. Conformationally ordered peptidomimetic oligomers are finding broad applications for molecular recognition and for inhibiting protein-protein interactions. One critical limitation is the limited set of design tools for identifying oligomer sequences that can adopt desired conformations. Here, we present expansions to the ROSETTA platform that enable structure prediction and design of five non-peptidic oligomer scaffolds (noncanonical backbones, oligooxopiperazines, oligo-peptoids, [Formula: see text]-peptides, hydrogen bond surrogate helices and oligosaccharides. This work is complementary to prior additions to model noncanonical protein side chains in ROSETTA. The main purpose of our manuscript is to give a detailed description to current and future developers of how each of these noncanonical backbones was implemented. Furthermore, we provide a general outline for implementation of new backbone types not discussed here. To illustrate the utility of this approach, we describe the first tests of the ROSETTA molecular mechanics energy function in the context of oligooxopiperazines, using quantum mechanical calculations as comparison points, scanning through backbone and side chain torsion angles for a model peptidomimetic. Finally, as an example of a novel design application, we describe the automated design of an oligooxopiperazine that inhibits the p53-MDM2 protein-protein interaction. For the general biological and bioengineering community, several noncanonical backbones have been incorporated into web applications that allow users to freely and rapidly test the presented protocols (http://rosie.rosettacommons.org. This work helps address the peptidomimetic community's need for an automated and expandable
The topology of integrable systems with incomplete fields
Aleshkin, K R
2014-01-01
Liouville's theorem holds for Hamiltonian systems with complete Hamiltonian fields which possess a complete involutive system of first integrals; such systems are called Liouville-integrable. In this paper integrable systems with incomplete Hamiltonian fields are investigated. It is shown that Liouville's theorem remains valid in the case of a single incomplete field, while if the number of incomplete fields is greater, a certain analogue of the theorem holds. An integrable system on the algebra sl(3) is taken as an example. Bibliography: 11 titles
Deformed type 0A matrix model and super-Liouville theory for fermionic black holes
Ahn, Changrim; Kim, Chanju; Park, Jaemo; Suyama, Takao; Yamamoto, Masayoshi
2006-01-01
We consider a c-circumflex = 1 model in the fermionic black hole background. For this purpose we consider a model which contains both the N 1 and the N = 2 super-Liouville interactions. We propose that this model is dual to a recently proposed type 0A matrix quantum mechanics model with vortex deformations. We support our conjecture by showing that non-perturbative corrections to the free energy computed by both the matrix model and the super-Liouville theories agree exactly by treating the N = 2 interaction as a small perturbation. We also show that a two-point function on sphere calculated from the deformed type 0A matrix model is consistent with that of the N = 2 super-Liouville theory when the N = 1 interaction becomes small. This duality between the matrix model and super-Liouville theories leads to a conjecture for arbitrary n-point correlation functions of the N = 1 super-Liouville theory on the sphere
Martens, Craig C., E-mail: cmartens@uci.edu
2016-12-20
In this paper, we revisit the semiclassical Liouville approach to describing molecular dynamics with electronic transitions using classical trajectories. Key features of the formalism are highlighted. The locality in phase space and presence of nonclassical terms in the generalized Liouville equations are emphasized and discussed in light of trajectory surface hopping methodology. The representation dependence of the coupled semiclassical Liouville equations in the diabatic and adiabatic bases are discussed and new results for the transformation theory of the Wigner functions representing the corresponding density matrix elements given. We show that the diagonal energies of the state populations are not conserved during electronic transitions, as energy is stored in the electronic coherence. We discuss the implications of this observation for the validity of imposing strict energy conservation in trajectory based methods for simulating nonadiabatic processes.
A quantum group approach to c{sub L} > 1 Liouville gravity
Suzuki, Takashi
1995-03-01
A candidate of c{sub L} > 1 Liouville gravity is studied via infinite dimensional representations of U{sub q}sl(2, C) with q at a root of unity. We show that vertex operators in this Liouville theory are factorized into classical vertex operators and those which are constructed from finite dimensional representations of U{sub q}sl(2, C). Expressions of correlation functions and transition amplitudes are presented. We discuss about our results and find an intimate relation between our quantization of the Liouville theory and the geometric quantization of moduli space of Riemann surfaces. An interpretation of quantum space-time is also given within this formulation. (author).
Noncanonical Hamiltonian density formulation of hydrodynamics and ideal MHD
Morrison, P.J.; Greene, J.M.
1980-04-01
A new Hamiltonian density formulation of a perfect fluid with or without a magnetic field is presented. Contrary to previous work the dynamical variables are the physical variables, rho, v, B, and s, which form a noncanonical set. A Poisson bracket which satisfies the Jacobi identity is defined. This formulation is transformed to a Hamiltonian system where the dynamical variables are the spatial Fourier coefficients of the fluid variables
Intermediate inflation from a non-canonical scalar field
Rezazadeh, K.; Karami, K. [Department of Physics, University of Kurdistan, Pasdaran St., Sanandaj (Iran, Islamic Republic of); Karimi, P., E-mail: rezazadeh86@gmail.com, E-mail: KKarami@uok.ac.ir, E-mail: parvin.karimi67@yahoo.com [Center for Excellence in Astronomy and Astrophysics (CEAA-RIAAM), P.O. Box 55134-441, Maragha (Iran, Islamic Republic of)
2015-09-01
We study the intermediate inflation in a non-canonical scalar field framework with a power-like Lagrangian. We show that in contrast with the standard canonical intermediate inflation, our non-canonical model is compatible with the observational results of Planck 2015. Also, we estimate the equilateral non-Gaussianity parameter which is in well agreement with the prediction of Planck 2015. Then, we obtain an approximation for the energy scale at the initial time of inflation and show that it can be of order of the Planck energy scale, i.e. M{sub P} ∼ 10{sup 18}GeV. We will see that after a short period of time, inflation enters in the slow-roll regime that its energy scale is of order M{sub P}/100 ∼ 10{sup 16}GeV and the horizon exit takes place in this energy scale. We also examine an idea in our non-canonical model to overcome the central drawback of intermediate inflation which is the fact that inflation never ends. We solve this problem without disturbing significantly the nature of the intermediate inflation until the time of horizon exit.
The degeneracy problem in non-canonical inflation
Easson, Damien A.; Powell, Brian A.
2013-01-01
While attempting to connect inflationary theories to observational physics, a potential difficulty is the degeneracy problem: a single set of observables maps to a range of different inflaton potentials. Two important classes of models affected by the degeneracy problem are canonical and non-canonical models, the latter marked by the presence of a non-standard kinetic term that generates observables beyond the scalar and tensor two-point functions on CMB scales. The degeneracy problem is manifest when these distinguishing observables go undetected. We quantify the size of the resulting degeneracy in this case by studying the most well-motivated non-canonical theory having Dirac-Born-Infeld Lagrangian. Beyond the scalar and tensor two-point functions on CMB scales, we then consider the possible detection of equilateral non-Gaussianity at Planck-precision and a measurement of primordial gravitational waves from prospective space-based laser interferometers. The former detection breaks the degeneracy with canonical inflation but results in poor reconstruction prospects, while the latter measurement enables a determination of n T which, while not breaking the degeneracy, can be shown to greatly improve the non-canonical reconstruction
Non-Canonical Cell Death Induced by p53
Atul Ranjan
2016-12-01
Full Text Available Programmed cell death is a vital biological process for multicellular organisms to maintain cellular homeostasis, which is regulated in a complex manner. Over the past several years, apart from apoptosis, which is the principal mechanism of caspase-dependent cell death, research on non-apoptotic forms of programmed cell death has gained momentum. p53 is a well characterized tumor suppressor that controls cell proliferation and apoptosis and has also been linked to non-apoptotic, non-canonical cell death mechanisms. p53 impacts these non-canonical forms of cell death through transcriptional regulation of its downstream targets, as well as direct interactions with key players involved in these mechanisms, in a cell type- or tissue context-dependent manner. In this review article, we summarize and discuss the involvement of p53 in several non-canonical modes of cell death, including caspase-independent apoptosis (CIA, ferroptosis, necroptosis, autophagic cell death, mitotic catastrophe, paraptosis, and pyroptosis, as well as its role in efferocytosis which is the process of clearing dead or dying cells.
Cornelis van der Mee
2005-01-01
Full Text Available We present the complete version including proofs of the results announced in [van der Mee C., Pivovarchik V.: A Sturm-Liouville spectral problem with boundary conditions depending on the spectral parameter. Funct. Anal. Appl. 36 (2002, 315–317 [Funkts. Anal. Prilozh. 36 (2002, 74–77 (Russian
Accurate high-lying eigenvalues of Schroedinger and Sturm-Liouville problems
Vanden Berghe, G.; Van Daele, M.; De Meyer, H.
1994-01-01
A modified difference and a Numerov-like scheme have been introduced in a shooting algorithm for the determination of the (higher-lying) eigenvalues of Schroedinger equations and Sturm-Liouville problems. Some numerical experiments are introduced. Time measurements have been performed. The proposed algorithms are compared with other previously introduced shooting schemes. The structure of the eigenvalue error is discussed. ((orig.))
Half-linear Sturm-Liouville problem with weights: asymptotic behavior of eigenfunctions
Drábek, P.; Kufner, Alois; Kuliev, K.
2014-01-01
Roč. 284, č. 1 (2014), s. 148-154 ISSN 0081-5438 Institutional support: RVO:67985840 Keywords : Sturm-Liouville problem * spectral problems * Hardy inequality Subject RIV: BA - General Mathematics Impact factor: 0.302, year: 2014 http://link.springer.com/article/10.1134%2FS008154381401009X
Lith, van B.S.; Thije Boonkkamp, ten J.H.M.; IJzerman, W.L.; Tukker, T.W.
2015-01-01
We compute numerical solutions of Liouville's equation with a discontinuous Hamiltonian. We assume that the underlying Hamiltonian system has a well-defined behaviour even when the Hamiltonian is discontinuous. In the case of geometrical optics such a discontinuity yields the familiar Snell's law or
Some New Ostrowski Type Inequalities via Fractional Integrals
Ghulam Farid
2017-05-01
Full Text Available We have found a new version of well known Ostrowski inequality in a very simple and antique way via Riemann-Liouville fractional integrals. Also some related results have been derived.
WKB approximation and tunneling in theories with noncanonical kinetic terms
González, Mariana Carrillo; Masoumi, Ali; Solomon, Adam R.; Trodden, Mark
2017-09-01
Tunneling is a fascinating aspect of quantum mechanics that renders the local minima of a potential meta-stable, with important consequences for particle physics, for the early hot stage of the universe, and more speculatively, for the behavior of the putative multiverse. While this phenomenon has been studied extensively for systems which have canonical kinetic terms, many theories of fundamental physics contain fields with noncanonical kinetic structures. It is therefore desirable to have a detailed framework for calculating tunneling rates and initial states after tunneling for these theories. In this work we present such a rigorous formulation and illustrate its use by applying it to a number of examples.
Stability of a Noncanonical Scalar Field Model during Cosmological Date
Z. Ossoulian
2016-01-01
Full Text Available Using the noncanonical model of scalar field, the cosmological consequences of a pervasive, self-interacting, homogeneous, and rolling scalar field are studied. In this model, the scalar field potential is “nonlinear” and decreases in magnitude with increasing the value of the scalar field. A special solution of the nonlinear field equations of ϕ that has time dependency as fixed point is obtained. The fixed point relies on the noncanonical term of action and γ-parameter; this parameter appeared in energy density of scalar field redshift. By means of such fixed point the different eigenvalues of the equation of motion will be obtained. In different epochs in the evolution of the Universe for different values of q and n, the potentials as a function of scalar field are attained. The behavior of baryonic perturbations in linear perturbation scenario as a considerable amount of energy density of scalar field at low redshifts prevents the growth of perturbations in the ordinary matter fluid. The energy density in the scalar field is not appreciably perturbed by nonrelativistic gravitational fields, in either the radiation or matter dominant or scalar field dominated epoch.
Sectors of solutions and minimal energies in classical Liouville theories for strings
Johansson, L.; Kihlberg, A.; Marnelius, R.
1984-01-01
All classical solutions of the Liouville theory for strings having finite stable minimum energies are calculated explicitly together with their minimal energies. Our treatment automatically includes the set of natural solitonlike singularities described by Jorjadze, Pogrebkov, and Polivanov. Since the number of such singularities is preserved in time, a sector of solutions is not only characterized by its boundary conditions but also by its number of singularities. Thus, e.g., the Liouville theory with periodic boundary conditions has three different sectors of solutions with stable minimal energies containing zero, one, and two singularities. (Solutions with more singularities have no stable minimum energy.) It is argued that singular solutions do not make the string singular and therefore may be included in the string quantization
Higher equations of motion in N=2 superconformal Liouville field theory
Ahn, Changrim; Stanishkov, Marian; Stoilov, Michail
2011-01-01
We present an infinite set of higher equations of motion in N=2 supersymmetric Liouville field theory. They are in one to one correspondence with the degenerate representations and are enumerated in addition to the U(1) charge ω by the positive integers m or (m,n) respectively. We check that in the classical limit these equations hold as relations among the classical fields.
Schulze-Halberg, Axel
2010-01-01
We study Green's functions of the generalized Sturm-Liouville problems that are related to each other by Darboux -equivalently, supersymmetrical - transformations. We establish an explicit relation between the corresponding Green's functions and derive a simple formula for their trace. The class of equations considered here includes the conventional Schroedinger equation and generalizations, such as for position-dependent mass and with linearly energy-dependent potential, as well as the stationary Fokker-Planck equation.
Memoria sobre el papel de Liouville en la historia de las funciones elípticas
Leonardo Solanilla Chavarro
2014-06-01
Full Text Available Este artículo recoge las principales conclusiones de una investigación sobre las contribuciones de J. Liouville a la teoría contemporánea de las funciones elípticas. Cubre la mayor parte de los resultados de una colaboración entre el grupo SUMMA del Departamento de Ciencias Básicas de la Universidad de Medellín y el grupo Mat del Departamento de Matemáticas y Estadística de la Universidad del Tolima. El proyecto ha sido financiado parcialmente por la Vicerrectoría de Investigaciones de la Universidad de Medellín y la Facultad de Ciencias de la Universidad del Tolima. Comienza con una descripción de la circunstancia histórica de Liouville, luego de la emergencia del concepto moderno de función elíptica en los trabajos de Abel y Jacobi. Después se discuten ciertos pormenores de las Leçons impartidas por el célebre matemático francés en el año de 1847. Ellos cubren el teorema que hemos llamado de Liouville-Borchardt, las proposiciones fundamentales sobre el número de ceros de las funciones meromorfas doblemente periódicas y los resultados sobre la relación entre los ceros y los polos. Al final, se esbozan importantes conclusiones sobre el legado de Liouville a la teoría de las funciones elípticas de hoy.
Comments on fusion matrix in N=1 super Liouville field theory
Hasmik Poghosyan
2016-08-01
Full Text Available We study several aspects of the N=1 super Liouville theory. We show that certain elements of the fusion matrix in the Neveu–Schwarz sector are related to the structure constants according to the same rules which we observe in rational conformal field theory. We collect some evidences that these relations should hold also in the Ramond sector. Using them the Cardy–Lewellen equation for defects is studied, and defects are constructed.
The Euler anomaly and scale factors in Liouville/Toda CFTs
Balasubramanian, Aswin [Theory Group, Department of Physics, University of Texas at Austin,2515 Speedway Stop C1608, Austin, TX 78712-1197 (United States)
2014-04-22
The role played by the Euler anomaly in the dictionary relating sphere partition functions of four dimensional theories of class S and two dimensional non rational CFTs is clarified. On the two dimensional side, this involves a careful treatment of scale factors in Liouville/Toda correlators. Using ideas from tinkertoy constructions for Gaiotto duality, a framework is proposed for evaluating these scale factors. The representation theory of Weyl groups plays a critical role in this framework.
Hsieh, Chang-Yu; Kapral, Raymond
2013-01-01
Mixed quantum-classical methods provide powerful algorithms for the simulation of quantum processes in large and complex systems. The forward-backward trajectory solution of the mixed quantum-classical Liouville equation in the mapping basis [J. Chem. Phys. 137, 22A507 (2012)] is one such scheme. It simulates the dynamics via the propagation of forward and backward trajectories of quantum coherent state variables, and the propagation of bath trajectories on a mean-field potential determined j...
Abdon Atangana
2014-01-01
Full Text Available The notion of uncertainty in groundwater hydrology is of great importance as it is known to result in misleading output when neglected or not properly accounted for. In this paper we examine this effect in groundwater flow models. To achieve this, we first introduce the uncertainties functions u as function of time and space. The function u accounts for the lack of knowledge or variability of the geological formations in which flow occur (aquifer in time and space. We next make use of Riemann-Liouville fractional derivatives that were introduced by Kobelev and Romano in 2000 and its approximation to modify the standard version of groundwater flow equation. Some properties of the modified Riemann-Liouville fractional derivative approximation are presented. The classical model for groundwater flow, in the case of density-independent flow in a uniform homogeneous aquifer is reformulated by replacing the classical derivative by the Riemann-Liouville fractional derivatives approximations. The modified equation is solved via the technique of green function and the variational iteration method.
Fan, Wentao; Bouguila, Nizar
2013-11-01
A large class of problems can be formulated in terms of the clustering process. Mixture models are an increasingly important tool in statistical pattern recognition and for analyzing and clustering complex data. Two challenging aspects that should be addressed when considering mixture models are how to choose between a set of plausible models and how to estimate the model's parameters. In this paper, we address both problems simultaneously within a unified online nonparametric Bayesian framework that we develop to learn a Dirichlet process mixture of Beta-Liouville distributions (i.e., an infinite Beta-Liouville mixture model). The proposed infinite model is used for the online modeling and clustering of proportional data for which the Beta-Liouville mixture has been shown to be effective. We propose a principled approach for approximating the intractable model's posterior distribution by a tractable one-which we develop-such that all the involved mixture's parameters can be estimated simultaneously and effectively in a closed form. This is done through variational inference that enjoys important advantages, such as handling of unobserved attributes and preventing under or overfitting; we explain that in detail. The effectiveness of the proposed work is evaluated on three challenging real applications, namely facial expression recognition, behavior modeling and recognition, and dynamic textures clustering.
Morrison, P.J., E-mail: morrison@physics.utexas.edu [Department of Physics and Institute for Fusion Studies, University of Texas, Austin (United States); Vanneste, J. [School of Mathematics and Maxwell Institute for Mathematical Sciences, University of Edinburgh (United Kingdom)
2016-05-15
A method, called beatification, is presented for rapidly extracting weakly nonlinear Hamiltonian systems that describe the dynamics near equilibria of systems possessing Hamiltonian form in terms of noncanonical Poisson brackets. The procedure applies to systems like fluids and plasmas in terms of Eulerian variables that have such noncanonical Poisson brackets, i.e., brackets with nonstandard and possibly degenerate form. A collection of examples of both finite and infinite dimensions is presented.
Cotangent Models for Integrable Systems
Kiesenhofer, Anna; Miranda, Eva
2017-03-01
We associate cotangent models to a neighbourhood of a Liouville torus in symplectic and Poisson manifolds focusing on b-Poisson/ b-symplectic manifolds. The semilocal equivalence with such models uses the corresponding action-angle theorems in these settings: the theorem of Liouville-Mineur-Arnold for symplectic manifolds and an action-angle theorem for regular Liouville tori in Poisson manifolds (Laurent- Gengoux et al., IntMath Res Notices IMRN 8: 1839-1869, 2011). Our models comprise regular Liouville tori of Poisson manifolds but also consider the Liouville tori on the singular locus of a b-Poisson manifold. For this latter class of Poisson structures we define a twisted cotangent model. The equivalence with this twisted cotangent model is given by an action-angle theorem recently proved by the authors and Scott (Math. Pures Appl. (9) 105(1):66-85, 2016). This viewpoint of cotangent models provides a new machinery to construct examples of integrable systems, which are especially valuable in the b-symplectic case where not many sources of examples are known. At the end of the paper we introduce non-degenerate singularities as lifted cotangent models on b-symplectic manifolds and discuss some generalizations of these models to general Poisson manifolds.
Noncanonical ATM Activation and Signaling in Response to Transcription-Blocking DNA Damage.
Marteijn, Jurgen A; Vermeulen, Wim; Tresini, Maria
2017-01-01
Environmental genotoxins and metabolic byproducts generate DNA lesions that can cause genomic instability and disrupt tissue homeostasis. To ensure genomic integrity, cells employ mechanisms that convert signals generated by stochastic DNA damage into organized responses, including activation of repair systems, cell cycle checkpoints, and apoptotic mechanisms. DNA damage response (DDR) signaling pathways coordinate these responses and determine cellular fates in part, by transducing signals that modulate RNA metabolism. One of the master DDR coordinators, the Ataxia Telangiectasia Mutated (ATM) kinase, has a fundamental role in mediating DNA damage-induced changes in mRNA synthesis. ATM acts by modulating a variety of RNA metabolic pathways including nascent RNA splicing, a process catalyzed by the spliceosome. Interestingly, ATM and the spliceosome influence each other's activity in a reciprocal manner by a pathway that initiates when transcribing RNA polymerase II (RNAPII) encounters DNA lesions that prohibit forward translocation. In response to stalling of RNAPII assembly of late-stage spliceosomes is disrupted resulting in increased splicing factor mobility. Displacement of spliceosomes from lesion-arrested RNA polymerases facilitates formation of R-loops between the nascent RNA and DNA adjacent to the transcription bubble. R-loops signal for noncanonical ATM activation which in quiescent cells occurs in absence of detectable dsDNA breaks. In turn, activated ATM signals to regulate spliceosome dynamics and AS genome wide.This chapter describes the use of fluorescence microscopy methods that can be used to evaluate noncanonical ATM activation by transcription-blocking DNA damage. First, we present an immunofluorescence-detection method that can be used to evaluate ATM activation by autophosphorylation, in fixed cells. Second, we present a protocol for Fluorescence Recovery After Photobleaching (FRAP) of GFP-tagged splicing factors, a highly sensitive and
Calzetta, E.; Habib, S.; Hu, B.L.
1988-01-01
We consider quantum fields in an external potential and show how, by using the Fourier transform on propagators, one can obtain the mass-shell constraint conditions and the Liouville-Vlasov equation for the Wigner distribution function. We then consider the Hadamard function G 1 (x 1 ,x 2 ) of a real, free, scalar field in curved space. We postulate a form for the Fourier transform F/sup (//sup Q//sup )/(X,k) of the propagator with respect to the difference variable x = x 1 -x 2 on a Riemann normal coordinate centered at Q. We show that F/sup (//sup Q//sup )/ is the result of applying a certain Q-dependent operator on a covariant Wigner function F. We derive from the wave equations for G 1 a covariant equation for the distribution function and show its consistency. We seek solutions to the set of Liouville-Vlasov equations for the vacuum and nonvacuum cases up to the third adiabatic order. Finally we apply this method to calculate the Hadamard function in the Einstein universe. We show that the covariant Wigner function can incorporate certain relevant global properties of the background spacetime. Covariant Wigner functions and Liouville-Vlasov equations are also derived for free fermions in curved spacetime. The method presented here can serve as a basis for constructing quantum kinetic theories in curved spacetime or for near-uniform systems under quasiequilibrium conditions. It can also be useful to the development of a transport theory of quantum fields for the investigation of grand unification and post-Planckian quantum processes in the early Universe
A bifurcation result for Sturm-Liouville problems with a set-valued term
Georg Hetzer
1998-11-01
Full Text Available It is established in this note that $-(ku''+g(cdot,uin mu F(cdot,u$, $u'(0=0=u'(1$, has a multiple bifurcation point at $ (0, 0}$ in the sense that infinitely many continua meet at $(0,0$. $F$ is a ``set-valued representation'' of a function with jump discontinuities along the line segment $[0,1]imes{0}$. The proof relies on a Sturm-Liouville version of Rabinowitz's bifurcation theorem and an approximation procedure.
Duality and the Knizhnik-Polyakov-Zamolodchikov relation in Liouville quantum gravity.
Duplantier, Bertrand; Sheffield, Scott
2009-04-17
We present a (mathematically rigorous) probabilistic and geometrical proof of the Knizhnik-Polyakov-Zamolodchikov relation between scaling exponents in a Euclidean planar domain D and in Liouville quantum gravity. It uses the properly regularized quantum area measure dmicro_{gamma}=epsilon;{gamma;{2}/2}e;{gammah_{epsilon}(z)}dz, where dz is the Lebesgue measure on D, gamma is a real parameter, 02 is shown to be related to the quantum measure dmu_{gamma;{'}}, gamma;{'}<2, by the fundamental duality gammagamma;{'}=4.
Symmetric duality for left and right Riemann–Liouville and Caputo fractional differences
Thabet Abdeljawad
2017-07-01
Full Text Available A discrete version of the symmetric duality of Caputo–Torres, to relate left and right Riemann–Liouville and Caputo fractional differences, is considered. As a corollary, we provide an evidence to the fact that in case of right fractional differences, one has to mix between nabla and delta operators. As an application, we derive right fractional summation by parts formulas and left fractional difference Euler–Lagrange equations for discrete fractional variational problems whose Lagrangians depend on right fractional differences.
Structure constants in the N=1 super-Liouville field theory
Poghossian, R.H.
1997-01-01
The symmetry algebra of N=1 super-Liouville field theory in two dimensions is the infinite-dimensional N=1 superconformal algebra, which allows one to prove that correlation functions containing degenerated fields obey some partial linear differential equations. In the special case of four-point function, including a primary field degenerated at the first level, these differential equations can be solved via hypergeometric functions. Taking into account mutual locality properties of fields and investigating s- and t-channel singularities we obtain some functional relations for three-point correlation functions. Solving this functional equations we obtain three-point functions in both Neveu-Schwarz and Ramond sectors. (orig.)
Spectral inversion of an indefinite Sturm-Liouville problem due to Richardson
Shanley, Paul E
2009-01-01
We study an indefinite Sturm-Liouville problem due to Richardson whose complicated eigenvalue dependence on a parameter has been a puzzle for decades. In atomic physics a process exists that inverts the usual Schroedinger situation of an energy eigenvalue depending on a coupling parameter into the so-called Sturmian problem where the coupling parameter becomes the eigenvalue which then depends on the energy. We observe that the Richardson equation is of the Sturmian type. This means that the Richardson and its related Schroedinger eigenvalue functions are inverses of each other and that the Richardson spectrum is therefore no longer a puzzle
A Liouville Problem for the Stationary Fractional Navier-Stokes-Poisson System
Wang, Y.; Xiao, J.
2017-06-01
This paper deals with a Liouville problem for the stationary fractional Navier-Stokes-Poisson system whose special case k=0 covers the compressible and incompressible time-independent fractional Navier-Stokes systems in R^{N≥2} . An essential difficulty raises from the fractional Laplacian, which is a non-local operator and thus makes the local analysis unsuitable. To overcome the difficulty, we utilize a recently-introduced extension-method in Wang and Xiao (Commun Contemp Math 18(6):1650019, 2016) which develops Caffarelli-Silvestre's technique in Caffarelli and Silvestre (Commun Partial Diff Equ 32:1245-1260, 2007).
Distance measurement and wave dispersion in a Liouville-string approach to quantum gravity
Amelino-Camelia, G; Mavromatos, Nikolaos E; Nanopoulos, Dimitri V
1997-01-01
Within a Liouville approach to non-critical string theory, we discuss space-time foam effects on the propagation of low-energy particles. We find an induced frequency-dependent dispersion in the propagation of a wave packet, and observe that this would affect the outcome of measurements involving low-energy particles as probes. In particular, the maximum possible order of magnitude of the space-time foam effects would give rise to an error in the measurement of distance comparable to that independently obtained in some recent heuristic quantum-gravity analyses. We also briefly compare these error estimates with the precision of astrophysical measurements.
Barvik, I [International Centre for Theoretical Physics, Trieste (Italy); Polasek, M [Charles Univ., Prague (Czech Republic). Inst. of Physics; Herman, P [Pedagogical Univ., Hradec Kralove (Czech Republic)
1995-08-01
We used the formal stochastic Liouville equations within Haken-Strobl-Reineker parametrization for the description of the influence of the bath on the memory functions entering the GME for a dimer and a linear trimer with a trap (here modeled as a sink). The often used inclusion of the noncoherent regime in the MF by an exponentially damped prefactor (after Kenkre`s prescription) does not hold for finite systems. The analytical form of the MF is changed more pronouncely and the influence of the sink in the center of the trimer runs parallel with the influence of the bath in destroying the coherence. (author). 60 refs.
A non-canonical transferred DNA insertion at the BRI1 locus in Arabidopsis thaliana.
Zhao, Zhong; Zhu, Yan; Erhardt, Mathieu; Ruan, Ying; Shen, Wen-Hui
2009-04-01
Agrobacterium-mediated transformation is widely used in transgenic plant engineering and has been proven to be a powerful tool for insertional mutagenesis of the plant genome. The transferred DNA (T-DNA) from Agrobacterium is integrated into the plant genome through illegitimate recombination between the T-DNA and the plant DNA. Contrasting to the canonical insertion, here we report on a locus showing a complex mutation associated with T-DNA insertion at the BRI1 gene in Arabidopsis thaliana. We obtained a mutant line, named salade for its phenotype of dwarf stature and proliferating rosette. Molecular characterization of this mutant revealed that in addition to T-DNA a non-T-DNA-localized transposon from bacteria was inserted in the Arabidopsis genome and that a region of more than 11.5 kb of the Arabidopsis genome was deleted at the insertion site. The deleted region contains the brassinosteroid receptor gene BRI1 and the transcription factor gene WRKY13. Our finding reveals non-canonical T-DNA insertion, implicating horizontal gene transfer and cautioning the use of T-DNA as mutagen in transgenic research.
Noncanonical self-assembly of multifunctional DNA nanoflowers for biomedical applications.
Zhu, Guizhi; Hu, Rong; Zhao, Zilong; Chen, Zhuo; Zhang, Xiaobing; Tan, Weihong
2013-11-06
DNA nanotechnology has been extensively explored to assemble various functional nanostructures for versatile applications. Mediated by Watson-Crick base-pairing, these DNA nanostructures have been conventionally assembled through hybridization of many short DNA building blocks. Here we report the noncanonical self-assembly of multifunctional DNA nanostructures, termed as nanoflowers (NFs), and the versatile biomedical applications. These NFs were assembled from long DNA building blocks generated via rolling circle replication (RCR) of a designer template. NF assembly was driven by liquid crystallization and dense packaging of building blocks, without relying on Watson-Crick base-pairing between DNA strands, thereby avoiding the otherwise conventional complicated DNA sequence design. NF sizes were readily tunable in a wide range, by simply adjusting such parameters as assembly time and template sequences. NFs were exceptionally resistant to nuclease degradation, denaturation, or dissociation at extremely low concentration, presumably resulting from the dense DNA packaging in NFs. The exceptional biostability is critical for biomedical applications. By rational design, NFs can be readily incorporated with myriad functional moieties. All these properties make NFs promising for versatile applications. As a proof-of-principle demonstration, in this study, NFs were integrated with aptamers, bioimaging agents, and drug loading sites, and the resultant multifunctional NFs were demonstrated for selective cancer cell recognition, bioimaging, and targeted anticancer drug delivery.
Noncanonical quantization of two particles interacting via a harmonic potential
Palev, T.D.
1981-01-01
Following the ideas of Wigner a non-canonical quantization of a system of two non-relativistic point particles, interacting via a harmonic potential is studied. The center-of-mass phase-space variables are quantized in a canonical way, whereas the internal momentum and the coordinates are assumed to be operators, generating finite-dimensional representations of the Lie superalgebra A(0, 2). It turns out that the operators of the internal Hamiltonian, the relative distance, the internal momentum and the orbital momentum commute with each other. The spectrum of these operators is finite. In particular the distance between the particles is preserved in time and can have four different values so that the particles are confined. Every coordinate operator can be diagonalized, however, the position of the particles cannot be localized, since the operators of the Cartesian cooordinates do not commute. The angular momentum of the system can be either zero or one (in units h/2π/2) [ru
Cao, Xiangyu; Le Doussal, Pierre; Rosso, Alberto; Santachiara, Raoul
2018-04-01
We study transitions in log-correlated random energy models (logREMs) that are related to the violation of a Seiberg bound in Liouville field theory (LFT): the binding transition and the termination point transition (a.k.a., pre-freezing). By means of LFT-logREM mapping, replica symmetry breaking and traveling-wave equation techniques, we unify both transitions in a two-parameter diagram, which describes the free-energy large deviations of logREMs with a deterministic background log potential, or equivalently, the joint moments of the free energy and Gibbs measure in logREMs without background potential. Under the LFT-logREM mapping, the transitions correspond to the competition of discrete and continuous terms in a four-point correlation function. Our results provide a statistical interpretation of a peculiar nonlocality of the operator product expansion in LFT. The results are rederived by a traveling-wave equation calculation, which shows that the features of LFT responsible for the transitions are reproduced in a simple model of diffusion with absorption. We examine also the problem by a replica symmetry breaking analysis. It complements the previous methods and reveals a rich large deviation structure of the free energy of logREMs with a deterministic background log potential. Many results are verified in the integrable circular logREM, by a replica-Coulomb gas integral approach. The related problem of common length (overlap) distribution is also considered. We provide a traveling-wave equation derivation of the LFT predictions announced in a precedent work.
Gravitational interactions of integrable models
Abdalla, E.; Abdalla, M.C.B.
1995-10-01
We couple non-linear σ-models to Liouville gravity, showing that integrability properties of symmetric space models still hold for the matter sector. Using similar arguments for the fermionic counterpart, namely Gross-Neveu-type models, we verify that such conclusions must also hold for them, as recently suggested. (author). 18 refs
A simple finite element method for boundary value problems with a Riemann–Liouville derivative
Jin, Bangti; Lazarov, Raytcho; Lu, Xiliang; Zhou, Zhi
2016-01-01
© 2015 Elsevier B.V. All rights reserved. We consider a boundary value problem involving a Riemann-Liouville fractional derivative of order α∈(3/2,2) on the unit interval (0,1). The standard Galerkin finite element approximation converges slowly due to the presence of singularity term xα-^{1} in the solution representation. In this work, we develop a simple technique, by transforming it into a second-order two-point boundary value problem with nonlocal low order terms, whose solution can reconstruct directly the solution to the original problem. The stability of the variational formulation, and the optimal regularity pickup of the solution are analyzed. A novel Galerkin finite element method with piecewise linear or quadratic finite elements is developed, and ^{L2}(D) error estimates are provided. The approach is then applied to the corresponding fractional Sturm-Liouville problem, and error estimates of the eigenvalue approximations are given. Extensive numerical results fully confirm our theoretical study.
A simple finite element method for boundary value problems with a Riemann–Liouville derivative
Jin, Bangti
2016-02-01
© 2015 Elsevier B.V. All rights reserved. We consider a boundary value problem involving a Riemann-Liouville fractional derivative of order α∈(3/2,2) on the unit interval (0,1). The standard Galerkin finite element approximation converges slowly due to the presence of singularity term xα-^{1} in the solution representation. In this work, we develop a simple technique, by transforming it into a second-order two-point boundary value problem with nonlocal low order terms, whose solution can reconstruct directly the solution to the original problem. The stability of the variational formulation, and the optimal regularity pickup of the solution are analyzed. A novel Galerkin finite element method with piecewise linear or quadratic finite elements is developed, and ^{L2}(D) error estimates are provided. The approach is then applied to the corresponding fractional Sturm-Liouville problem, and error estimates of the eigenvalue approximations are given. Extensive numerical results fully confirm our theoretical study.
Non-canonical autophagy: an exception or an underestimated form of autophagy?
Scarlatti, Francesca; Maffei, Roberta; Beau, Isabelle; Ghidoni, Riccardo; Codogno, Patrice
2008-11-01
Macroautophagy (hereafter called autophagy) is a dynamic and evolutionarily conserved process used to sequester and degrade cytoplasm and entire organelles in a sequestering vesicle with a double membrane, known as the autophagosome, which ultimately fuses with a lysosome to degrade its autophagic cargo. Recently, we have unraveled two distinct forms of autophagy in cancer cells, which we term canonical and non-canonical autophagy. In contrast to classical or canonical autophagy, non-canonical autophagy is a process that does not require the entire set of autophagy-related (Atg) proteins in particular Beclin 1, to form the autophagosome. Non-canonical autophagy is therefore not blocked by the knockdown of Beclin 1 or of its binding partner hVps34. Moreover overexpression of Bcl-2, which is known to block canonical starvation-induced autophagy by binding to Beclin 1, is unable to reverse the non-canonical autophagy triggered by the polyphenol resveratrol in the breast cancer MCF-7 cell line. In MCF-7 cells, at least, non-canonical autophagy is involved in the caspase-independent cell death induced by resveratrol.
Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.
Michael F Sloma
2017-11-01
Full Text Available Prediction of RNA tertiary structure from sequence is an important problem, but generating accurate structure models for even short sequences remains difficult. Predictions of RNA tertiary structure tend to be least accurate in loop regions, where non-canonical pairs are important for determining the details of structure. Non-canonical pairs can be predicted using a knowledge-based model of structure that scores nucleotide cyclic motifs, or NCMs. In this work, a partition function algorithm is introduced that allows the estimation of base pairing probabilities for both canonical and non-canonical interactions. Pairs that are predicted to be probable are more likely to be found in the true structure than pairs of lower probability. Pair probability estimates can be further improved by predicting the structure conserved across multiple homologous sequences using the TurboFold algorithm. These pairing probabilities, used in concert with prior knowledge of the canonical secondary structure, allow accurate inference of non-canonical pairs, an important step towards accurate prediction of the full tertiary structure. Software to predict non-canonical base pairs and pairing probabilities is now provided as part of the RNAstructure software package.
Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.
Sloma, Michael F; Mathews, David H
2017-11-01
Prediction of RNA tertiary structure from sequence is an important problem, but generating accurate structure models for even short sequences remains difficult. Predictions of RNA tertiary structure tend to be least accurate in loop regions, where non-canonical pairs are important for determining the details of structure. Non-canonical pairs can be predicted using a knowledge-based model of structure that scores nucleotide cyclic motifs, or NCMs. In this work, a partition function algorithm is introduced that allows the estimation of base pairing probabilities for both canonical and non-canonical interactions. Pairs that are predicted to be probable are more likely to be found in the true structure than pairs of lower probability. Pair probability estimates can be further improved by predicting the structure conserved across multiple homologous sequences using the TurboFold algorithm. These pairing probabilities, used in concert with prior knowledge of the canonical secondary structure, allow accurate inference of non-canonical pairs, an important step towards accurate prediction of the full tertiary structure. Software to predict non-canonical base pairs and pairing probabilities is now provided as part of the RNAstructure software package.
R. Darzi
2010-01-01
Full Text Available We applied the variational iteration method and the homotopy perturbation method to solve Sturm-Liouville eigenvalue and boundary value problems. The main advantage of these methods is the flexibility to give approximate and exact solutions to both linear and nonlinear problems without linearization or discretization. The results show that both methods are simple and effective.
Darzi R; Neamaty A
2010-01-01
We applied the variational iteration method and the homotopy perturbation method to solve Sturm-Liouville eigenvalue and boundary value problems. The main advantage of these methods is the flexibility to give approximate and exact solutions to both linear and nonlinear problems without linearization or discretization. The results show that both methods are simple and effective.
Guliyev, Namig J.
2008-01-01
International audience; Inverse problems of recovering the coefficients of Sturm–Liouville problems with the eigenvalue parameter linearly contained in one of the boundary conditions are studied: 1) from the sequences of eigenvalues and norming constants; 2) from two spectra. Necessary and sufficient conditions for the solvability of these inverse problems are obtained.
Bang, J.M.; Gareev, F.A.
1977-01-01
Different convergence properties of the Sturm-Liouville expansion are investigated with particular attention to the case of states which satisfy Schroedinger-like equations with a fixed energy and different depths of a potential, particulary of the Woods-Saxon used in nuclear physics
Kim, Myong-Ha; Ri, Guk-Chol; O, Hyong-Chol
2013-01-01
This paper provides the existence and representation of solution to an initial value problem for the general multi-term linear fractional differential equation with generalized Riemann-Liouville fractional derivatives and constant coefficients by using operational calculus of Mikusinski's type. We prove that the initial value problem has the solution of if and only if some initial values should be zero.
Generalized second law of thermodynamics for non-canonical scalar field model with corrected-entropy
Das, Sudipta; Mamon, Abdulla Al; Debnath, Ujjal
2015-01-01
In this work, we have considered a non-canonical scalar field dark energy model in the framework of flat FRW background. It has also been assumed that the dark matter sector interacts with the non-canonical dark energy sector through some interaction term. Using the solutions for this interacting non-canonical scalar field dark energy model, we have investigated the validity of generalized second law (GSL) of thermodynamics in various scenarios using first law and area law of thermodynamics. For this purpose, we have assumed two types of horizons viz apparent horizon and event horizon for the universe and using first law of thermodynamics, we have examined the validity of GSL on both apparent and event horizons. Next, we have considered two types of entropy-corrections on apparent and event horizons. Using the modified area law, we have examined the validity of GSL of thermodynamics on apparent and event horizons under some restrictions of model parameters. (orig.)
Unifying Dark Matter and Dark Energy with non-Canonical Scalars
Mishra, Swagat S.; Sahni, Varun
2018-01-01
Non-canonical scalar fields with the Lagrangian ${\\cal L} = X^\\alpha - V(\\phi)$, possess the attractive property that the speed of sound, $c_s^{2} = (2\\,\\alpha - 1)^{-1}$, can be exceedingly small for large values of $\\alpha$. This allows a non-canonical field to cluster and behave like warm/cold dark matter on small scales. We demonstrate that simple potentials such as $V = V_0\\coth^2{\\phi}$ and the Starobinsky-type potential $V(\\phi) = V_0 \\left ( 1 - e^{-{\\phi}}\\right )^{2}$ can unify dark...
Perkins, Timothy N.; Dentener, Mieke A.; Stassen, Frank R.; Rohde, Gernot G.; Mossman, Brooke T.; Wouters, Emiel F.M.; Reynaert, Niki L.
2016-01-01
Growth and development of the mature lung is a complex process orchestrated by a number of intricate developmental signaling pathways. Wingless-type MMTV-integration site (WNT) signaling plays critical roles in controlling branching morphogenesis cell differentiation, and formation of the conducting and respiratory airways. In addition, WNT pathways are often re-activated in mature lungs during repair and regeneration. WNT- signaling has been elucidated as a crucial contributor to the development of idiopathic pulmonary fibrosis as well as other hyper-proliferative lung diseases. Silicosis, a detrimental occupational lung disease caused by excessive inhalation of crystalline silica dust, is hallmarked by repeated cycles of damaging inflammation, epithelial hyperplasia, and formation of dense, hyalinized nodules of whorled collagen. However, mechanisms of epithelial cell hyperplasia and matrix deposition are not well understood, as most research efforts have focused on the pronounced inflammatory response. Microarray data from our previous studies has revealed a number of WNT-signaling and WNT-target genes altered by crystalline silica in human lung epithelial cells. In the present study, we utilize pathway analysis to designate connections between genes altered by silica in WNT-signaling networks. Furthermore, we confirm microarray findings by QRT-PCR and demonstrate both activation of canonical (β-catenin) and down-regulation of non-canonical (WNT5A) signaling in immortalized (BEAS-2B) and primary (PBEC) human bronchial epithelial cells. These findings suggest that WNT-signaling and cross-talk with other pathways (e.g. Notch), may contribute to proliferative, fibrogenic and inflammatory responses to silica in lung epithelial cells. - Highlights: • Pathway analysis reveals silica-induced WNT-signaling in lung epithelial cells. • Silica-induced canonical WNT-signaling is mediated by autocrine/paracrine signals. • Crystalline silica decreases non-canonical WNT
Perkins, Timothy N.; Dentener, Mieke A. [Department of Respiratory Medicine, Maastricht University Medical Centre +, Maastricht University Maastricht (Netherlands); Stassen, Frank R. [Department of Medical Microbiology, Maastricht University Medical Centre +, Maastricht University Maastricht (Netherlands); Rohde, Gernot G. [Department of Respiratory Medicine, Maastricht University Medical Centre +, Maastricht University Maastricht (Netherlands); Mossman, Brooke T. [Department of Pathology, University of Vermont College of Medicine, Burlington, VT (United States); Wouters, Emiel F.M. [Department of Respiratory Medicine, Maastricht University Medical Centre +, Maastricht University Maastricht (Netherlands); Reynaert, Niki L., E-mail: n.reynaert@maastrichtuniversity.nl [Department of Respiratory Medicine, Maastricht University Medical Centre +, Maastricht University Maastricht (Netherlands)
2016-06-15
Growth and development of the mature lung is a complex process orchestrated by a number of intricate developmental signaling pathways. Wingless-type MMTV-integration site (WNT) signaling plays critical roles in controlling branching morphogenesis cell differentiation, and formation of the conducting and respiratory airways. In addition, WNT pathways are often re-activated in mature lungs during repair and regeneration. WNT- signaling has been elucidated as a crucial contributor to the development of idiopathic pulmonary fibrosis as well as other hyper-proliferative lung diseases. Silicosis, a detrimental occupational lung disease caused by excessive inhalation of crystalline silica dust, is hallmarked by repeated cycles of damaging inflammation, epithelial hyperplasia, and formation of dense, hyalinized nodules of whorled collagen. However, mechanisms of epithelial cell hyperplasia and matrix deposition are not well understood, as most research efforts have focused on the pronounced inflammatory response. Microarray data from our previous studies has revealed a number of WNT-signaling and WNT-target genes altered by crystalline silica in human lung epithelial cells. In the present study, we utilize pathway analysis to designate connections between genes altered by silica in WNT-signaling networks. Furthermore, we confirm microarray findings by QRT-PCR and demonstrate both activation of canonical (β-catenin) and down-regulation of non-canonical (WNT5A) signaling in immortalized (BEAS-2B) and primary (PBEC) human bronchial epithelial cells. These findings suggest that WNT-signaling and cross-talk with other pathways (e.g. Notch), may contribute to proliferative, fibrogenic and inflammatory responses to silica in lung epithelial cells. - Highlights: • Pathway analysis reveals silica-induced WNT-signaling in lung epithelial cells. • Silica-induced canonical WNT-signaling is mediated by autocrine/paracrine signals. • Crystalline silica decreases non-canonical WNT
Bulk-boundary correlators in the hermitian matrix model and minimal Liouville gravity
Bourgine, Jean-Emile; Ishiki, Goro; Rim, Chaiho
2012-01-01
We construct the one matrix model (MM) correlators corresponding to the general bulk-boundary correlation numbers of the minimal Liouville gravity (LG) on the disc. To find agreement between both discrete and continuous approach, we investigate the resonance transformation mixing boundary and bulk couplings. It leads to consider two sectors, depending on whether the matter part of the LG correlator is vanishing due to the fusion rules. In the vanishing case, we determine the explicit transformation of the boundary couplings at the first order in bulk couplings. In the non-vanishing case, no bulk-boundary resonance is involved and only the first order of pure boundary resonances have to be considered. Those are encoded in the matrix polynomials determined in our previous paper. We checked the agreement for the bulk-boundary correlators of MM and LG in several non-trivial cases. In this process, we developed an alternative method to derive the boundary resonance encoding polynomials.
A Numerical method for solving a class of fractional Sturm-Liouville eigenvalue problems
Muhammed I. Syam
2017-11-01
Full Text Available This article is devoted to both theoretical and numerical studies of eigenvalues of regular fractional $2\\alpha $-order Sturm-Liouville problem where $\\frac{1}{2}< \\alpha \\leq 1$. In this paper, we implement the reproducing kernel method RKM to approximate the eigenvalues. To find the eigenvalues, we force the approximate solution produced by the RKM satisfy the boundary condition at $x=1$. The fractional derivative is described in the Caputo sense. Numerical results demonstrate the accuracy of the present algorithm. In addition, we prove the existence of the eigenfunctions of the proposed problem. Uniformly convergence of the approximate eigenfunctions produced by the RKM to the exact eigenfunctions is proven.
Riemann-Hilbert treatment of Liouville theory on the torus: the general case
Menotti, Pietro
2011-01-01
We extend the previous treatment of Liouville theory on the torus to the general case in which the distribution of charges is not necessarily symmetric. This requires the concept of Fuchsian differential equation on Riemann surfaces. We show through a group theoretic argument that the Heun parameter and a weight constant are sufficient to satisfy all monodromy conditions. We then apply the technique of differential equations on a Riemann surface to the two-point function on the torus in which one source is arbitrary and the other small. As a byproduct, we give in terms of quadratures the exact Green function on the square and on the rhombus with opening angle 2π/6 in the background of the field generated by an arbitrary charge.
The Liouville equation for flavour evolution of neutrinos and neutrino wave packets
Hansen, Rasmus Sloth Lundkvist; Smirnov, Alexei Yu., E-mail: rasmus@mpi-hd.mpg.de, E-mail: smirnov@mpi-hd.mpg.de [Max-Planck-Institut für Kernphysik, Saupfercheckweg 1, 69117 Heidelberg (Germany)
2016-12-01
We consider several aspects related to the form, derivation and applications of the Liouville equation (LE) for flavour evolution of neutrinos. To take into account the quantum nature of neutrinos we derive the evolution equation for the matrix of densities using wave packets instead of Wigner functions. The obtained equation differs from the standard LE by an additional term which is proportional to the difference of group velocities. We show that this term describes loss of the propagation coherence in the system. In absence of momentum changing collisions, the LE can be reduced to a single derivative equation over a trajectory coordinate. Additional time and spatial dependence may stem from initial (production) conditions. The transition from single neutrino evolution to the evolution of a neutrino gas is considered.
An anisotropic standing wave braneworld and associated Sturm-Liouville problem
Gogberashvili, Merab; Herrera-Aguilar, Alfredo; Malagón-Morejón, Dagoberto
2012-01-01
We present a consistent derivation of the recently proposed 5D anisotropic standing wave braneworld generated by gravity coupled to a phantom-like scalar field. We explicitly solve the corresponding junction conditions, a fact that enables us to give a physical interpretation to the anisotropic energy-momentum tensor components of the brane. So matter on the brane represents an oscillating fluid which emits anisotropic waves into the bulk. We also analyze the Sturm-Liouville problem associated with the correct localization condition of the transverse to the brane metric and scalar fields. It is shown that this condition restricts the physically meaningful space of solutions for the localization of the fluctuations of the model. (paper)
D-branes in N=2 Liouville theory and its mirror
Israel, Dan; Pakman, Ari; Troost, Jan
2005-01-01
We study D-branes in the mirror pair N=2 Liouville/supersymmetric SL(2,R)/U(1) coset superconformal field theories. We build D0-, D1- and D2-branes, on the basis of the boundary state construction for the H 3 + conformal field theory. We also construct D0-branes in an orbifold that rotates the angular direction of the cigar. We show how the poles of correlators associated to localized states and bulk interactions naturally decouple in the one-point functions of localized and extended branes. We stress the role played in the analysis of D-brane spectra by primaries in SL(2,R)/U(1) which are descendents of the parent theory
Irregular singularities in Liouville theory and Argyres-Douglas type gauge theories, I
Gaiotto, D. [Institute for Advanced Study (IAS), Princeton, NJ (United States); Teschner, J. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)
2012-03-15
Motivated by problems arising in the study of N=2 supersymmetric gauge theories we introduce and study irregular singularities in two-dimensional conformal field theory, here Liouville theory. Irregular singularities are associated to representations of the Virasoro algebra in which a subset of the annihilation part of the algebra act diagonally. In this paper we define natural bases for the space of conformal blocks in the presence of irregular singularities, describe how to calculate their series expansions, and how such conformal blocks can be constructed by some delicate limiting procedure from ordinary conformal blocks. This leads us to a proposal for the structure functions appearing in the decomposition of physical correlation functions with irregular singularities into conformal blocks. Taken together, we get a precise prediction for the partition functions of some Argyres-Douglas type theories on S{sup 4}. (orig.)
A Liouville type theorem for Lane-Emden systems involving the fractional Laplacian
Quaas, Alexander; Xia, Aliang
2016-08-01
We establish a Liouville type theorem for the fractional Lane-Emden system: {(-Δ)αu=vqin RN,(-Δ)αv=upin RN, where α \\in (0,1) , N>2α and p, q are positive real numbers and in an appropriate new range. To prove our result we will use the local realization of fractional Laplacian, which can be constructed as a Dirichlet-to-Neumann operator of a degenerate elliptic equation in the spirit of Caffarelli and Silvestre (2007 Commun. PDE 32 1245-60). Our proof is based on a monotonicity argument for suitable transformed functions and the method of moving planes in a half infinite cylinder ({IR}× S+N , where S+N is the half unit sphere in {{{R}}N+1} ) based on maximum principles which are obtained by barrier functions and a coupling argument using a fractional Sobolev trace inequality.
Kinetics of subdiffusion-assisted reactions: non-Markovian stochastic Liouville equation approach
Shushin, A I
2005-01-01
Anomalous specific features of the kinetics of subdiffusion-assisted bimolecular reactions (time-dependence, dependence on parameters of systems, etc) are analysed in detail with the use of the non-Markovian stochastic Liouville equation (SLE), which has been recently derived within the continuous-time random-walk (CTRW) approach. In the CTRW approach, subdiffusive motion of particles is modelled by jumps whose onset probability distribution function is of a long-tailed form. The non-Markovian SLE allows for rigorous describing of some peculiarities of these reactions; for example, very slow long-time behaviour of the kinetics, non-analytical dependence of the reaction rate on the reactivity of particles, strong manifestation of fluctuation kinetics showing itself in very slowly decreasing behaviour of the kinetics at very long times, etc
Irregular singularities in Liouville theory and Argyres-Douglas type gauge theories, I
Gaiotto, D.; Teschner, J.
2012-03-01
Motivated by problems arising in the study of N=2 supersymmetric gauge theories we introduce and study irregular singularities in two-dimensional conformal field theory, here Liouville theory. Irregular singularities are associated to representations of the Virasoro algebra in which a subset of the annihilation part of the algebra act diagonally. In this paper we define natural bases for the space of conformal blocks in the presence of irregular singularities, describe how to calculate their series expansions, and how such conformal blocks can be constructed by some delicate limiting procedure from ordinary conformal blocks. This leads us to a proposal for the structure functions appearing in the decomposition of physical correlation functions with irregular singularities into conformal blocks. Taken together, we get a precise prediction for the partition functions of some Argyres-Douglas type theories on S 4 . (orig.)
Non-canonical programmed cell death mechanisms triggered by natural compounds.
Diederich, Marc; Cerella, Claudia
2016-10-01
Natural compounds are the fundament of pharmacological treatments and more than 50% of all anticancer drugs are of natural origins or at least derived from scaffolds present in Nature. Over the last 25 years, molecular mechanisms triggered by natural anticancer compounds were investigated. Emerging research showed that molecules of natural origins are useful for both preventive and therapeutic purposes by targeting essential hallmarks and enabling characteristics described by Hanahan and Weinberg. Moreover, natural compounds were able to change the differentiation status of selected cell types. One of the earliest response of cells treated by pharmacologically active compounds is the change of its morphology leading to ultra-structural perturbations: changes in membrane composition, cytoskeleton integrity, alterations of the endoplasmic reticulum, mitochondria and of the nucleus lead to formation of morphological alterations that are a characteristic of both compound and cancer type preceding cell death. Apoptosis and autophagy were traditionally considered as the most prominent cell death or cell death-related mechanisms. By now multiple other cell death modalities were described and most likely involved in response to chemotherapeutic treatment. It can be hypothesized that especially necrosis-related phenotypes triggered by various treatments or evolving from apoptotic or autophagic mechanisms, provide a more efficient therapeutic outcome depending on cancer type and genetic phenotype of the patient. In fact, the recent discovery of multiple regulated forms of necrosis and the initial elucidation of the corresponding cell signaling pathways appear nowadays as important tools to clarify the immunogenic potential of non-canonical forms of cell death induction. Copyright © 2016 Elsevier Ltd. All rights reserved.
Residue-specific incorporation of noncanonical amino acids for protein engineering
van Eldijk, Mark B.; van Hest, Jan C.M.; Lemke, E.A.
2018-01-01
The incorporation of noncanonical amino acids has given protein chemists access to an expanded repertoire of amino acids. This methodology has significantly broadened the scope of protein engineering allowing introduction of amino acids with non-native functionalities, such as bioorthogonal reactive
Silvia Mazzotta
2016-10-01
Full Text Available Wnt signaling is a key regulator of vertebrate heart development; however, specific roles for human cardiomyocyte development remain uncertain. Here we use human embryonic stem cells (hESCs to analyze systematically in human cardiomyocyte development the expression of endogenous Wnt signaling components, monitor pathway activity, and dissect stage-specific requirements for canonical and noncanonical Wnt signaling mechanisms using small-molecule inhibitors. Our analysis suggests that WNT3 and WNT8A, via FZD7 and canonical signaling, regulate BRACHYURY expression and mesoderm induction; that WNT5A/5B, via ROR2 and noncanonical signaling, regulate MESP1 expression and cardiovascular development; and that later in development WNT2, WNT5A/5B, and WNT11, via FZD4 and FZD6, regulate functional cardiomyocyte differentiation via noncanonical Wnt signaling. Our findings confirm in human development previously proposed roles for canonical Wnt signaling in sequential stages of vertebrate cardiomyogenesis, and identify more precise roles for noncanonical signaling and for individual Wnt signal and Wnt receptor genes in human cardiomyocyte development.
The extracellular domain of Lrp5/6 inhibits noncanonical Wnt signaling in vivo
Bryja, Vítězslav; Andersson, E.R.; Schambony, A.; Esner, M.; Bryjová, Lenka; Biris, K.K.; Hall, A.C.; Kraft, B.; Čajánek, L.; Yamaguchi, T.P.; Buckingham, M.; Arenas, E.
2009-01-01
Roč. 20, č. 3 (2009), s. 924-936 ISSN 1059-1524 Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702 Keywords : non-canonical Wnt signaling * Lrp5/6 * mouse Subject RIV: BO - Biophysics Impact factor: 5.979, year: 2009
Machine Learning Reveals a Non-Canonical Mode of Peptide Binding to MHC class II Molecules
Andreatta, Massimo; Jurtz, Vanessa Isabell; Kaever, Thomas
2017-01-01
binding motif with a non-canonical binding core of length different from nine. This previously undescribed mode of peptide binding to MHCII molecules gives a more complete picture of peptide presentation by MHCII and allows us to model more accurately this event. This article is protected by copyright...
Noncanonical microRNAs and endogenous siRNAs in lytic infection of murine gammaherpesvirus.
Jing Xia
Full Text Available MicroRNA (miRNA and endogenous small interfering RNA (endo-siRNA are two essential classes of small noncoding RNAs (sncRNAs in eukaryotes. The class of miRNA is diverse and there exist noncanonical miRNAs that bypass the canonical miRNA biogenesis pathway. In order to identify noncanonical miRNAs and endo-siRNAs responding to virus infection and study their potential function, we sequenced small-RNA species from cells lytically infected with murine gammaherpesvirus 68 (MHV68. In addition to three novel canonical miRNAs in mouse, two antisense miRNAs in virus and 25 novel noncanonical miRNAs, including miRNAs derived from transfer RNAs, small nucleolar RNAs and introns, in the host were identified. These noncanonical miRNAs exhibited features distinct from that of canonical miRNAs in lengths of hairpins, base pairings and first nucleotide preference. Many of the novel miRNAs are conserved in mammals. Besides several known murine endo-siRNAs detected by the sequencing profiling, a novel locus in the mouse genome was identified to produce endo-siRNAs. This novel endo-siRNA locus is comprised of two tandem inverted B4 short interspersed nuclear elements (SINEs. Unexpectedly, the SINE-derived endo-siRNAs were found in a variety of sequencing data and virus-infected cells. Moreover, a murine miRNA was up-regulated more than 35 fold in infected than in mock-treated cells. The putative targets of the viral and the up-regulated murine miRNAs were potentially involved in processes of gene transcription and protein phosphorylation, and localized to membranes, suggesting their potential role in manipulating the host basal immune system during lytic infection. Our results extended the number of noncanonical miRNAs in mammals and shed new light on their potential functions of lytic infection of MHV68.
Alexander M Many
Full Text Available The characterization of mammary stem cells, and signals that regulate their behavior, is of central importance in understanding developmental changes in the mammary gland and possibly for targeting stem-like cells in breast cancer. The canonical Wnt/β-catenin pathway is a signaling mechanism associated with maintenance of self-renewing stem cells in many tissues, including mammary epithelium, and can be oncogenic when deregulated. Wnt1 and Wnt3a are examples of ligands that activate the canonical pathway. Other Wnt ligands, such as Wnt5a, typically signal via non-canonical, β-catenin-independent, pathways that in some cases can antagonize canonical signaling. Since the role of non-canonical Wnt signaling in stem cell regulation is not well characterized, we set out to investigate this using mammosphere formation assays that reflect and quantify stem cell properties. Ex vivo mammosphere cultures were established from both wild-type and Wnt1 transgenic mice and were analyzed in response to manipulation of both canonical and non-canonical Wnt signaling. An increased level of mammosphere formation was observed in cultures derived from MMTV-Wnt1 versus wild-type animals, and this was blocked by treatment with Dkk1, a selective inhibitor of canonical Wnt signaling. Consistent with this, we found that a single dose of recombinant Wnt3a was sufficient to increase mammosphere formation in wild-type cultures. Surprisingly, we found that Wnt5a also increased mammosphere formation in these assays. We confirmed that this was not caused by an increase in canonical Wnt/β-catenin signaling but was instead mediated by non-canonical Wnt signals requiring the receptor tyrosine kinase Ror2 and activity of the Jun N-terminal kinase, JNK. We conclude that both canonical and non-canonical Wnt signals have positive effects promoting stem cell activity in mammosphere assays and that they do so via independent signaling mechanisms.
Ahmedov, Anvarjon; Materneh, Ehab; Zainuddin, Hishamuddin
2017-09-01
The relevance of waves in quantum mechanics naturally implies that the decomposition of arbitrary wave packets in terms of monochromatic waves plays an important role in applications of the theory. When eigenfunction expansions does not converge, then the expansions of the functions with certain smoothness should be considered. Such functions gained prominence primarily through their application in quantum mechanics. In this work we study the almost everywhere convergence of the eigenfunction expansions from Liouville classes L_p^α ({T^N}), related to the self-adjoint extension of the Laplace operator in torus TN . The sufficient conditions for summability is obtained using the modified Poisson formula. Isomorphism properties of the elliptic differential operators is applied in order to obtain estimation for the Fourier series of the functions from the classes of Liouville L_p^α .
The integrable structure of nonrational conformal field theory
Bytsko, A. [Steklov Mathematics Institute, St. Petersburg (Russian Federation); Teschner, J. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)
2009-02-15
Using the example of Liouville theory, we show how the separation into left- and rightmoving degrees of freedom of a nonrational conformal field theory can be made explicit in terms of its integrable structure. The key observation is that there exist separate Baxter Q-operators for left- and right-moving degrees of freedom. Combining a study of the analytic properties of the Q-operators with Sklyanin's Separation of Variables Method leads to a complete characterization of the spectrum. Taking the continuum limit allows us in particular to rederive the Liouville reflection amplitude using only the integrable structure. (orig.)
Arkad'ev, V.A.; Pogrebkov, A.K.; Polivanov, M.K.
1988-01-01
The concept of tangent vector is made more precise to meet the specific nature of the Sturm-Liouville problem, and on this basis a Poisson bracket that is modified compared with the Gardner form by special boundary terms is derived from the Zakharov-Faddeev symplectic form. This bracket is nondegenerate, and in it the variables of the discrete and continuous spectra are separated
Xu Xixiang, E-mail: xu_xixiang@hotmail.co [College of Science, Shandong University of Science and Technology, Qingdao, 266510 (China)
2010-01-04
An integrable coupling family of Merola-Ragnisco-Tu lattice systems is derived from a four-by-four matrix spectral problem. The Hamiltonian structure of the resulting integrable coupling family is established by the discrete variational identity. Each lattice system in the resulting integrable coupling family is proved to be integrable discrete Hamiltonian system in Liouville sense. Ultimately, a nonisospectral integrable lattice family associated with the resulting integrable lattice family is constructed through discrete zero curvature representation.
Xu Xixiang
2010-01-01
An integrable coupling family of Merola-Ragnisco-Tu lattice systems is derived from a four-by-four matrix spectral problem. The Hamiltonian structure of the resulting integrable coupling family is established by the discrete variational identity. Each lattice system in the resulting integrable coupling family is proved to be integrable discrete Hamiltonian system in Liouville sense. Ultimately, a nonisospectral integrable lattice family associated with the resulting integrable lattice family is constructed through discrete zero curvature representation.
Burtnyak Ivan V.
2017-06-01
Full Text Available In the paper we apply the spectral theory to find the price for derivatives of financial assets assuming that the processes described are Markov processes and such that can be considered in the Hilbert space L^2 using the Sturm-Liouville theory. Bessel diffusion processes are used in studying Asian options. We consider the financial flows generated by the Bessel diffusions by expressing them in terms of the system of Bessel functions of the first kind, provided that they take into account the linear combination of the flow and its spatial derivative. Such expression enables calculating the size of the market portfolio and provides a measure of the amount of internal volatility in the market at any given moment, allows investigating the dynamics of the equity market. The expansion of the Green function in terms of the system of Bessel functions is expressed by an analytic formula that is convenient in calculating the volume of financial flows. All assumptions are natural, result in analytic formulas that are consistent with the empirical data and, when applied in practice, adequately reflect the processes in equity markets.
Analysis of geometric phase effects in the quantum-classical Liouville formalism.
Ryabinkin, Ilya G; Hsieh, Chang-Yu; Kapral, Raymond; Izmaylov, Artur F
2014-02-28
We analyze two approaches to the quantum-classical Liouville (QCL) formalism that differ in the order of two operations: Wigner transformation and projection onto adiabatic electronic states. The analysis is carried out on a two-dimensional linear vibronic model where geometric phase (GP) effects arising from a conical intersection profoundly affect nuclear dynamics. We find that the Wigner-then-Adiabatic (WA) QCL approach captures GP effects, whereas the Adiabatic-then-Wigner (AW) QCL approach does not. Moreover, the Wigner transform in AW-QCL leads to an ill-defined Fourier transform of double-valued functions. The double-valued character of these functions stems from the nontrivial GP of adiabatic electronic states in the presence of a conical intersection. In contrast, WA-QCL avoids this issue by starting with the Wigner transform of single-valued quantities of the full problem. As a consequence, GP effects in WA-QCL can be associated with a dynamical term in the corresponding equation of motion. Since the WA-QCL approach uses solely the adiabatic potentials and non-adiabatic derivative couplings as an input, our results indicate that WA-QCL can capture GP effects in two-state crossing problems using first-principles electronic structure calculations without prior diabatization or introduction of explicit phase factors.
Physics-based models for measurement correlations: application to an inverse Sturm–Liouville problem
Bal, Guillaume; Ren Kui
2009-01-01
In many inverse problems, the measurement operator, which maps objects of interest to available measurements, is a smoothing (regularizing) operator. Its inverse is therefore unbounded and as a consequence, only the low-frequency component of the object of interest is accessible from inevitably noisy measurements. In many inverse problems however, the neglected high-frequency component may significantly affect the measured data. Using simple scaling arguments, we characterize the influence of the high-frequency component. We then consider situations where the correlation function of such an influence may be estimated by asymptotic expansions, for instance as a random corrector in homogenization theory. This allows us to consistently eliminate the high-frequency component and derive a closed form, more accurate, inverse problem for the low-frequency component of the object of interest. We present the asymptotic expression of the correlation matrix of the eigenvalues in a Sturm–Liouville problem with unknown potential. We propose an iterative algorithm for the reconstruction of the potential from knowledge of the eigenvalues and show that using the approximate correlation matrix significantly improves the reconstructions
Analysis of geometric phase effects in the quantum-classical Liouville formalism
Ryabinkin, Ilya G.; Izmaylov, Artur F. [Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4 (Canada); Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6 (Canada); Hsieh, Chang-Yu; Kapral, Raymond [Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6 (Canada)
2014-02-28
We analyze two approaches to the quantum-classical Liouville (QCL) formalism that differ in the order of two operations: Wigner transformation and projection onto adiabatic electronic states. The analysis is carried out on a two-dimensional linear vibronic model where geometric phase (GP) effects arising from a conical intersection profoundly affect nuclear dynamics. We find that the Wigner-then-Adiabatic (WA) QCL approach captures GP effects, whereas the Adiabatic-then-Wigner (AW) QCL approach does not. Moreover, the Wigner transform in AW-QCL leads to an ill-defined Fourier transform of double-valued functions. The double-valued character of these functions stems from the nontrivial GP of adiabatic electronic states in the presence of a conical intersection. In contrast, WA-QCL avoids this issue by starting with the Wigner transform of single-valued quantities of the full problem. As a consequence, GP effects in WA-QCL can be associated with a dynamical term in the corresponding equation of motion. Since the WA-QCL approach uses solely the adiabatic potentials and non-adiabatic derivative couplings as an input, our results indicate that WA-QCL can capture GP effects in two-state crossing problems using first-principles electronic structure calculations without prior diabatization or introduction of explicit phase factors.
Coronel-Escamilla, A.; Gómez-Aguilar, J. F.; Torres, L.; Escobar-Jiménez, R. F.; Valtierra-Rodríguez, M.
2017-12-01
In this paper, we propose a state-observer-based approach to synchronize variable-order fractional (VOF) chaotic systems. In particular, this work is focused on complete synchronization with a so-called unidirectional master-slave topology. The master is described by a dynamical system in state-space representation whereas the slave is described by a state observer. The slave is composed of a master copy and a correction term which in turn is constituted of an estimation error and an appropriate gain that assures the synchronization. The differential equations of the VOF chaotic system are described by the Liouville-Caputo and Atangana-Baleanu-Caputo derivatives. Numerical simulations involving the synchronization of Rössler oscillators, Chua's systems and multi-scrolls are studied. The simulations show that different chaotic behaviors can be obtained if different smooths functions defined in the interval (0 , 1 ] are used as the variable order of the fractional derivatives. Furthermore, simulations show that the VOF chaotic systems can be synchronized.
Geometric properties of static Einstein-Maxwell dilaton horizons with a Liouville potential
Abdolrahimi, Shohreh; Shoom, Andrey A.
2011-01-01
We study nondegenerate and degenerate (extremal) Killing horizons of arbitrary geometry and topology within the Einstein-Maxwell-dilaton model with a Liouville potential (the EMdL model) in d-dimensional (d≥4) static space-times. Using Israel's description of a static space-time, we construct the EMdL equations and the space-time curvature invariants: the Ricci scalar, the square of the Ricci tensor, and the Kretschmann scalar. Assuming that space-time metric functions and the model fields are real analytic functions in the vicinity of a space-time horizon, we study the behavior of the space-time metric and the fields near the horizon and derive relations between the space-time curvature invariants calculated on the horizon and geometric invariants of the horizon surface. The derived relations generalize similar relations known for horizons of static four- and five-dimensional vacuum and four-dimensional electrovacuum space-times. Our analysis shows that all the extremal horizon surfaces are Einstein spaces. We present the necessary conditions for the existence of static extremal horizons within the EMdL model.
Horizon-preserving dualities and perturbations in non-canonical scalar field cosmologies
Geshnizjani, Ghazal; Kinney, William H.; Dizgah, Azadeh Moradinezhad
2012-01-01
We generalize the cosmological duality between inflation and cyclic contraction under the interchange a↔H to the case of non-canonical scalar field theories with varying speed of sound. The single duality in the canonical case generalizes to a family of three dualities constructed to leave the cosmological acoustic horizon invariant. We find three classes of models: (I) DBI inflation, (II) the non-canonical generalization of cyclic contraction, and (III) a new cosmological solution with rapidly decreasing speed of sound and relatively slowly growing scale factor, which we dub stalled cosmology. We construct dual analogs to the inflationary slow roll approximation, and solve for the curvature perturbation in all three cases. Both cyclic contraction and stalled cosmology predict a strongly blue spectrum for the curvature perturbations inconsistent with observations
Non-Canonical Roles of Dengue Virus Non-Structural Proteins
Julianna D. Zeidler
2017-03-01
Full Text Available The Flaviviridae family comprises a number of human pathogens, which, although sharing structural and functional features, cause diseases with very different outcomes. This can be explained by the plurality of functions exerted by the few proteins coded by viral genomes, with some of these functions shared among members of a same family, but others being unique for each virus species. These non-canonical functions probably have evolved independently and may serve as the base to the development of specific therapies for each of those diseases. Here it is discussed what is currently known about the non-canonical roles of dengue virus (DENV non-structural proteins (NSPs, which may account for some of the effects specifically observed in DENV infection, but not in other members of the Flaviviridae family. This review explores how DENV NSPs contributes to the physiopathology of dengue, evasion from host immunity, metabolic changes, and redistribution of cellular components during infection.
The dark sector from interacting canonical and non-canonical scalar fields
De Souza, Rudinei C; Kremer, Gilberto M
2010-01-01
In this work general models with interactions between two canonical scalar fields and between one non-canonical (tachyon type) and one canonical scalar field are investigated. The potentials and couplings to the gravity are selected through the Noether symmetry approach. These general models are employed to describe interactions between dark energy and dark matter, with the fields being constrained by the astronomical data. The cosmological solutions of some cases are compared with the observed evolution of the late Universe.
Bentley, Kirsten; Keep, Sarah May; Armesto, Maria; Britton, Paul
2013-02-01
Coronavirus subgenomic mRNA (sgmRNA) synthesis occurs via a process of discontinuous transcription involving transcription regulatory sequences (TRSs) located in the 5' leader sequence (TRS-L) and upstream of each structural and group-specific gene (TRS-B). Several gammacoronaviruses including infectious bronchitis virus (IBV) contain a putative open reading frame (ORF), localized between the M gene and gene 5, which is controversial due to the perceived absence of a TRS. We have studied the transcription of a novel sgmRNA associated with this potential ORF and found it to be transcribed via a previously unidentified noncanonical TRS-B. Using an IBV reverse genetics system, we demonstrated that the template-switching event during intergenic region (IR) sgmRNA synthesis occurs at the 5' end of the noncanonical TRS-B and recombines between nucleotides 5 and 6 of the 8-nucleotide consensus TRS-L. Introduction of a complete TRS-B showed that higher transcription levels are achieved by increasing the number of nucleotide matches between TRS-L and TRS-B. Translation of a protein from the sgmRNA was demonstrated using enhanced green fluorescent protein, suggesting the translation of a fifth, novel, group-specific protein for IBV. This study has resolved an issue concerning the number of ORFs expressed by members of the Gammacoronavirus genus and proposes the existence of a fifth IBV accessory protein. We confirmed previous reports that coronaviruses can produce sgmRNAs from noncanonical TRS-Bs, which may expand their repertoire of proteins. We also demonstrated that noncanonical TRS-Bs may provide a mechanism by which coronaviruses can control protein expression levels by reducing sgmRNA synthesis.
Search for the non-canonical Ising spin glass on rewired square lattices
Surungan, Tasrief
2018-03-01
A spin glass (SG) of non-canonical type is a purely antiferromagnetic (AF) system, exemplified by the AF Ising model on a scale free network (SFN), studied by Bartolozzi et al. [ Phys. Rev. B73, 224419 (2006)]. Frustration in this new type of SG is rendered by topological factor and its randomness is caused by random connectivity. As an SFN corresponds to a large dimensional lattice, finding non-canonical SG in lattice with physical dimension is desireable. However, a regular lattice can not have random connectivity. In order to obtain lattices with random connection and preserving the notion of finite dimension, we costructed rewired lattices. We added some extra bonds randomly connecting each site of a regular lattice to its next-nearest neighbors. Very recently, Surungan et al., studied AF Heisenberg system on rewired square lattice and found no SG behavior [AIP Conf. Proc. 1719, 030006 (2016)]. Due to the importance of discrete symmetry for phase transition, here we study similar structure for the Ising model (Z 2 symmetry). We used Monte Carlo simulation with Replica Exchange algorithm. Two types of structures were studied, firstly, the rewired square lattices with one extra bonds added to each site, and secondly, two bonds added to each site. We calculated the Edwards-Anderson paremeter, the commonly used parameter in searching for SG phase. The non-canonical SG is clearly observed in the rewired square lattice with two extra bonds added.
Lu, Dianchen; Seadawy, Aly R.; Ali, Asghar
2018-06-01
In this current work, we employ novel methods to find the exact travelling wave solutions of Modified Liouville equation and the Symmetric Regularized Long Wave equation, which are called extended simple equation and exp(-Ψ(ξ))-expansion methods. By assigning the different values to the parameters, different types of the solitary wave solutions are derived from the exact traveling wave solutions, which shows the efficiency and precision of our methods. Some solutions have been represented by graphical. The obtained results have several applications in physical science.
New application of functional integrals to classical mechanics
Zherebtsov, Anton; Ilinski, Kirill
2005-01-01
In this Letter a new functional integral representation for classical dynamics is introduced. It is achieved by rewriting the Liouville picture in terms of bosonic creation-annihilation operators and utilizing the standard derivation of functional integrals for dynamical quantities in the coherent states representation. This results in a new class of functional integrals which are exactly solvable and can be found explicitly when the underlying classical systems are integrable
Lagrangian Differentiation, Integration and Eigenvalues Problems
Durand, L.
1983-01-01
Calogero recently proposed a new and very powerful method for the solution of Sturm-Liouville eigenvalue problems based on Lagrangian differentiation. In this paper, some results of a numerical investigation of Calogero's method for physical interesting problems are presented. It is then shown that one can 'invert' his differentiation technique to obtain a flexible, factorially convergent Lagrangian integration scheme which should be useful in a variety of problems, e.g. solution of integral equations
Larsen, A.L.; Sanchez, N.
1996-01-01
We find that the fundamental quadratic form of classical string propagation in (2+1)-dimensional constant curvature spacetimes solves the sinh-Gordon equation, the cosh-Gordon equation, or the Liouville equation. We show that in both de Sitter and anti endash de Sitter spacetimes (as well as in the 2+1 black hole anti endash de Sitter spacetime), all three equations must be included to cover the generic string dynamics. The generic properties of the string dynamics are directly extracted from the properties of these three equations and their associated potentials (irrespective of any solution). These results complete and generalize earlier discussions on this topic (until now, only the sinh-Gordon sector in de Sitter spacetime was known). We also construct new classes of multistring solutions, in terms of elliptic functions, to all three equations in both de Sitter and anti endash de Sitter spacetimes. Our results can be straightforwardly generalized to constant curvature spacetimes of arbitrary dimension, by replacing the sinh-Gordon equation, the cosh-Gordon equation, and the Liouville equation by their higher dimensional generalizations. copyright 1996 The American Physical Society
Barvík, I.; Rejman, Dominik; Panova, Natalya; Šanderová, Hana; Krásný, Libor
2017-01-01
Roč. 41, č. 2 (2017), s. 131-138 ISSN 0168-6445 R&D Projects: GA ČR GA15-05228S; GA ČR GA15-11711S Institutional support: RVO:61388963 ; RVO:61388971 Keywords : RNA polymerase * non-canonical transcription initiation * transcription initiating substrate * nicotinamide adenine dinucleotide (NAD(+)) * coenzymes * RNA stability Subject RIV: EB - Genetics ; Molecular Biology; EE - Microbiology, Virology (MBU-M) OBOR OECD: Biochemistry and molecular biology; Microbiology (MBU-M) Impact factor: 12.198, year: 2016
A Chern-Simons gauge-fixed Lagrangian in a 'non-canonical' BRST approach
Constantinescu, R; Ionescu, C
2009-01-01
This paper presents a possible path which starts from the extended BRST Hamiltonian formalism and ends with a covariant Lagrangian action, using the equivalence between the two formalisms. The approach allows a simple account of the form of the master equation and offers a natural identification of some 'non-canonical' operators and variables. These are the main items which solve the major difficulty of the extended BRST Lagrangian formalism, i.e., the gauge-fixing problem. The algorithm we propose applies to a non-Abelian Chern-Simons model coupled with Dirac fields
De-Santiago, Josue; Cervantes-Cota, Jorge L.
2011-01-01
We study a unification model for dark energy, dark matter, and inflation with a single scalar field with noncanonical kinetic term. In this model, the kinetic term of the Lagrangian accounts for the dark matter and dark energy, and at early epochs, a quadratic potential accounts for slow roll inflation. The present work is an extension to the work by Bose and Majumdar [Phys. Rev. D 79, 103517 (2009).] with a more general kinetic term that was proposed by Chimento in Phys. Rev. D 69, 123517 (2004). We demonstrate that the model is viable at the background and linear perturbation levels.
Noncanonical Effects of IRF9 in Intestinal Inflammation: More than Type I and Type III Interferons.
Rauch, Isabella; Rosebrock, Felix; Hainzl, Eva; Heider, Susanne; Majoros, Andrea; Wienerroither, Sebastian; Strobl, Birgit; Stockinger, Silvia; Kenner, Lukas; Müller, Mathias; Decker, Thomas
2015-07-01
The interferon (IFN)-stimulated gene factor 3 (ISGF3) transcription factor with its Stat1, Stat2, and interferon regulatory factor 9 (IRF9) subunits is employed for transcriptional responses downstream of receptors for type I interferons (IFN-I) that include IFN-α and IFN-β and type III interferons (IFN-III), also called IFN-λ. Here, we show in a murine model of dextran sodium sulfate (DSS)-induced colitis that IRF9 deficiency protects animals, whereas the combined loss of IFN-I and IFN-III receptors worsens their condition. We explain the different phenotypes by demonstrating a function of IRF9 in a noncanonical transcriptional complex with Stat1, apart from IFN-I and IFN-III signaling. Together, Stat1 and IRF9 produce a proinflammatory activity that overrides the benefits of the IFN-III response on intestinal epithelial cells. Our results further suggest that the CXCL10 chemokine gene is an important mediator of this proinflammatory activity. We thus establish IFN-λ as a potentially anticolitogenic cytokine and propose an important role for IRF9 as a component of noncanonical Stat complexes in the development of colitis. Copyright © 2015, American Society for Microbiology. All Rights Reserved.
Noncanonical WNT-5A signaling impairs endogenous lung repair in COPD
Baarsma, Hoeke A.; John-Schuster, Gerrit; Heinzelmann, Katharina; Dagouassat, Maylis; Boczkowski, Jorge; Brusselle, Guy G.; Smits, Ron; Yildirim, Ali Ö.
2017-01-01
Chronic obstructive pulmonary disease (COPD) is a leading cause of death worldwide. One main pathological feature of COPD is the loss of functional alveolar tissue without adequate repair (emphysema), yet the underlying mechanisms are poorly defined. Reduced WNT–β-catenin signaling is linked to impaired lung repair in COPD; however, the factors responsible for attenuating this pathway remain to be elucidated. Here, we identify a canonical to noncanonical WNT signaling shift contributing to COPD pathogenesis. We demonstrate enhanced expression of noncanonical WNT-5A in two experimental models of COPD and increased posttranslationally modified WNT-5A in human COPD tissue specimens. WNT-5A was increased in primary lung fibroblasts from COPD patients and induced by COPD-related stimuli, such as TGF-β, cigarette smoke (CS), and cellular senescence. Functionally, mature WNT-5A attenuated canonical WNT-driven alveolar epithelial cell wound healing and transdifferentiation in vitro. Lung-specific WNT-5A overexpression exacerbated airspace enlargement in elastase-induced emphysema in vivo. Accordingly, inhibition of WNT-5A in vivo attenuated lung tissue destruction, improved lung function, and restored expression of β-catenin–driven target genes and alveolar epithelial cell markers in the elastase, as well as in CS-induced models of COPD. We thus identify a novel essential mechanism involved in impaired mesenchymal–epithelial cross talk in COPD pathogenesis, which is amenable to therapy. PMID:27979969
BAG3-dependent noncanonical autophagy induced by proteasome inhibition in HepG2 cells.
Liu, Bao-Qin; Du, Zhen-Xian; Zong, Zhi-Hong; Li, Chao; Li, Ning; Zhang, Qiang; Kong, De-Hui; Wang, Hua-Qin
2013-06-01
Emerging lines of evidence have shown that blockade of ubiquitin-proteasome system (UPS) activates autophagy. The molecular players that regulate the relationship between them remain to be elucidated. Bcl-2 associated athanogene 3 (BAG3) is a member of the BAG co-chaperone family that regulates the ATPase activity of heat shock protein 70 (HSP70) chaperone family. Studies on BAG3 have demonstrated that it plays multiple roles in physiological and pathological processes, including antiapoptotic activity, signal transduction, regulatory role in virus infection, cell adhesion and migration. Recent studies have attracted much attention on its role in initiation of autophagy. The current study, for the first time, demonstrates that proteasome inhibitors elicit noncanonical autophagy, which was not suppressed by inhibitors of class III phosphatidylinositol 3-kinase (PtdIns3K) or shRNA against Beclin 1 (BECN1). In addition, we demonstrate that BAG3 is ascribed to activation of autophagy elicited by proteasome inhibitors and MAPK8/9/10 (also known as JNK1/2/3 respectively) activation is also implicated via upregulation of BAG3. Moreover, we found that noncanonical autophagy mediated by BAG3 suppresses responsiveness of HepG2 cells to proteasome inhibitors.
Grinberg, H.
1983-11-01
The projection operator method of Zwanzig and Feshbach is used to construct the time-dependent field operators in the interaction picture. The formula developed to describe the time dependence involves time-ordered cosine and sine projected evolution (memory) superoperators, from which a master equation for the interaction-picture single-particle Green's function in a Liouville space is derived. (author)
Yanmei Sun
2012-01-01
Full Text Available By using the Leggett-Williams fixed theorem, we establish the existence of multiple positive solutions for second-order nonhomogeneous Sturm-Liouville boundary value problems with linear functional boundary conditions. One explicit example with singularity is presented to demonstrate the application of our main results.
Ahmet Bekir
2014-09-01
Full Text Available In this paper, the fractional partial differential equations are defined by modified Riemann–Liouville fractional derivative. With the help of fractional derivative and traveling wave transformation, these equations can be converted into the nonlinear nonfractional ordinary differential equations. Then G′G-expansion method is applied to obtain exact solutions of the space-time fractional Burgers equation, the space-time fractional KdV-Burgers equation and the space-time fractional coupled Burgers’ equations. As a result, many exact solutions are obtained including hyperbolic function solutions, trigonometric function solutions and rational solutions. These results reveal that the proposed method is very effective and simple in performing a solution to the fractional partial differential equation.
Kovner, Alex
In the framework of dense-dilute CGC approach we study fluctuations in the multiplicity of produced particles in p-A collisions. We show that the leading effect that drives the fluctuations is the Bose enhancement of gluons in the proton wave function. We explicitly calculate the moment generating function that resums the effects of Bose enhancement. We show that it can be understood in terms of the Liouville effective action for the composite field which is identified with the fluctuating density, or saturation momentum of the proton. The resulting probability distribution turns out to be very close to the gamma-distribution. We also calculate the first correction to this distribution which is due to pairwise Hanbury Brown-Twiss correlations of produced gluons.
N.A. Kostin
2015-03-01
Full Text Available The paper proposes the non-canonical spectral decomposition of random functions of the traction voltages and currents. This decomposition is adapted for the electric transportation systems. The numerical representation is carried out for the random function of voltage on the pantograph of electric locomotives VL8 and DE1.
Gossypol induces pyroptosis in mouse macrophages via a non-canonical inflammasome pathway
Lin, Qiu-Ru; Li, Chen-Guang; Zha, Qing-Bing; Xu, Li-Hui; Pan, Hao; Zhao, Gao-Xiang; Ouyang, Dong-Yun; He, Xian-Hui
2016-01-01
Gossypol, a polyphenolic compound isolated from cottonseeds, has been reported to possess many pharmacological activities, but whether it can influence inflammasome activation remains unclear. In this study, we found that in mouse macrophages, gossypol induced cell death characterized by rapid membrane rupture and robust release of HMGB1 and pro-caspase-11 comparable to ATP treatment, suggesting an induction of pyroptotic cell death. Unlike ATP, gossypol induced much low levels of mature interleukin-1β (IL-1β) secretion from mouse peritoneal macrophages primed with LPS, although it caused pro-IL-1β release similar to that of ATP. Consistent with this, activated caspase-1 responsible for pro-IL-1β maturation was undetectable in gossypol-treated peritoneal macrophages. Besides, RAW 264.7 cells lacking ASC expression and caspase-1 activation also underwent pyroptotic cell death upon gossypol treatment. In further support of pyroptosis induction, both pan-caspase inhibitor and caspase-1 subfamily inhibitor, but not caspase-3 inhibitor, could sharply suppress gossypol-induced cell death. Other canonical pyroptotic inhibitors, including potassium chloride and N-acetyl-L-cysteine, could suppress ATP-induced pyroptosis but failed to inhibit or even enhanced gossypol-induced cell death, whereas nonspecific pore-formation inhibitor glycine could attenuate this process, suggesting involvement of a non-canonical pathway. Of note, gossypol treatment eliminated thioglycollate-induced macrophages in the peritoneal cavity with recruitment of other leukocytes. Moreover, gossypol administration markedly decreased the survival of mice in a bacterial sepsis model. Collectively, these results suggested that gossypol induced pyroptosis in mouse macrophages via a non-canonical inflammasome pathway, which raises a concern for its in vivo cytotoxicity to macrophages. - Highlights: • Gossypol induces pyroptosis in mouse peritoneal and RAW 264.7 macrophages. • In LPS
Gossypol induces pyroptosis in mouse macrophages via a non-canonical inflammasome pathway
Lin, Qiu-Ru; Li, Chen-Guang [Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou 510632 (China); Zha, Qing-Bing [Department of Fetal Medicine, The First Affiliated Hospital of Jinan University, Guangzhou 510632 (China); Xu, Li-Hui [Department of Cell Biology, College of Life Science and Technology, Jinan University, Guangzhou 510632 (China); Pan, Hao; Zhao, Gao-Xiang [Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou 510632 (China); Ouyang, Dong-Yun, E-mail: dongyun1967@aliyun.com [Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou 510632 (China); He, Xian-Hui, E-mail: thexh@jnu.edu.cn [Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou 510632 (China)
2016-02-01
Gossypol, a polyphenolic compound isolated from cottonseeds, has been reported to possess many pharmacological activities, but whether it can influence inflammasome activation remains unclear. In this study, we found that in mouse macrophages, gossypol induced cell death characterized by rapid membrane rupture and robust release of HMGB1 and pro-caspase-11 comparable to ATP treatment, suggesting an induction of pyroptotic cell death. Unlike ATP, gossypol induced much low levels of mature interleukin-1β (IL-1β) secretion from mouse peritoneal macrophages primed with LPS, although it caused pro-IL-1β release similar to that of ATP. Consistent with this, activated caspase-1 responsible for pro-IL-1β maturation was undetectable in gossypol-treated peritoneal macrophages. Besides, RAW 264.7 cells lacking ASC expression and caspase-1 activation also underwent pyroptotic cell death upon gossypol treatment. In further support of pyroptosis induction, both pan-caspase inhibitor and caspase-1 subfamily inhibitor, but not caspase-3 inhibitor, could sharply suppress gossypol-induced cell death. Other canonical pyroptotic inhibitors, including potassium chloride and N-acetyl-L-cysteine, could suppress ATP-induced pyroptosis but failed to inhibit or even enhanced gossypol-induced cell death, whereas nonspecific pore-formation inhibitor glycine could attenuate this process, suggesting involvement of a non-canonical pathway. Of note, gossypol treatment eliminated thioglycollate-induced macrophages in the peritoneal cavity with recruitment of other leukocytes. Moreover, gossypol administration markedly decreased the survival of mice in a bacterial sepsis model. Collectively, these results suggested that gossypol induced pyroptosis in mouse macrophages via a non-canonical inflammasome pathway, which raises a concern for its in vivo cytotoxicity to macrophages. - Highlights: • Gossypol induces pyroptosis in mouse peritoneal and RAW 264.7 macrophages. • In LPS
The DOZZ formula from the path integral
Kupiainen, Antti; Rhodes, Rémi; Vargas, Vincent
2018-05-01
We present a rigorous proof of the Dorn, Otto, Zamolodchikov, Zamolodchikov formula (the DOZZ formula) for the 3 point structure constants of Liouville Conformal Field Theory (LCFT) starting from a rigorous probabilistic construction of the functional integral defining LCFT given earlier by the authors and David. A crucial ingredient in our argument is a probabilistic derivation of the reflection relation in LCFT based on a refined tail analysis of Gaussian multiplicative chaos measures.
Suseela, Y V; Narayanaswamy, Nagarjun; Pratihar, Sumon; Govindaraju, Thimmaiah
2018-02-05
The structural diversity and functional relevance of nucleic acids (NAs), mainly deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), are indispensable for almost all living organisms, with minute aberrations in their structure and function becoming causative factors in numerous human diseases. The standard structures of NAs, termed canonical structures, are supported by Watson-Crick hydrogen bonding. Under special physiological conditions, NAs adopt distinct spatial organisations, giving rise to non-canonical conformations supported by hydrogen bonding other than the Watson-Crick type; such non-canonical structures have a definite function in controlling gene expression and are considered as novel diagnostic and therapeutic targets. Development of molecular probes for these canonical and non-canonical DNA/RNA structures has been an active field of research. Among the numerous probes studied, probes with turn-on fluorescence in the far-red (600-750 nm) region are highly sought-after due to minimal autofluorescence and cellular damage. Far-red fluorescent probes are vital for real-time imaging of NAs in live cells as they provide good resolution and minimal perturbation of the cell under investigation. In this review, we present recent advances in the area of far-red fluorescent probes of DNA/RNA and non-canonical G-quadruplex structures. For the sake of continuity and completeness, we provide a brief overview of visible fluorescent probes. Utmost importance is given to design criteria, characteristic properties and biological applications, including in cellulo imaging, apart from critical discussion on limitations of the far-red fluorescent probes. Finally, we offer current and future prospects in targeting canonical and non-canonical NAs specific to cellular organelles, through sequence- and conformation-specific far-red fluorescent probes. We also cover their implications in chemical and molecular biology, with particular focus on decoding various disease
Complement factor H family proteins in their non-canonical role as modulators of cellular functions.
Józsi, Mihály; Schneider, Andrea E; Kárpáti, Éva; Sándor, Noémi
2018-01-04
Complement factor H is a major regulator of the alternative pathway of the complement system. The factor H-related proteins are less characterized, but recent data indicate that they rather promote complement activation. These proteins have some common ligands with factor H and have both overlapping and distinct functions depending on domain composition and the degree of conservation of amino acid sequence. Factor H and some of the factor H-related proteins also appear in a non-canonical function that is beyond their role in the modulation of complement activation. This review covers our current understanding on this emerging role of factor H family proteins in modulating the activation and function of various cells by binding to receptors or receptor ligands. Copyright © 2018 Elsevier Ltd. All rights reserved.
Mao, Suifang; Shah, Alok S; Moninger, Thomas O; Ostedgaard, Lynda S; Lu, Lin; Tang, Xiao Xiao; Thornell, Ian M; Reznikov, Leah R; Ernst, Sarah E; Karp, Philip H; Tan, Ping; Keshavjee, Shaf; Abou Alaiwa, Mahmoud H; Welsh, Michael J
2018-02-06
Differentiated airway epithelia produce sonic hedgehog (SHH), which is found in the thin layer of liquid covering the airway surface. Although previous studies showed that vertebrate HH signaling requires primary cilia, as airway epithelia mature, the cells lose primary cilia and produce hundreds of motile cilia. Thus, whether airway epithelia have apical receptors for SHH has remained unknown. We discovered that motile cilia on airway epithelial cells have HH signaling proteins, including patched and smoothened. These cilia also have proteins affecting cAMP-dependent signaling, including Gα i and adenylyl cyclase 5/6. Apical SHH decreases intracellular levels of cAMP, which reduces ciliary beat frequency and pH in airway surface liquid. These results suggest that apical SHH may mediate noncanonical HH signaling through motile cilia to dampen respiratory defenses at the contact point between the environment and the lung, perhaps counterbalancing processes that stimulate airway defenses. Copyright © 2018 the Author(s). Published by PNAS.
Spontaneous symmetry breaking and neutral stability in the noncanonical Hamiltonian formalism
Morrison, P.J.; Eliezer, S.
1985-10-01
The noncanonical Hamiltonian formalism is based upon a generalization of the Poisson bracket, a particular form of which is possessed by continuous media fields. Associated with this generalization are special constants of motion called Casimirs. These are constants that can be viewed as being built into the phase space, for they are invariant for all Hamiltonians. Casimirs are important because when added to the Hamiltonian they yield an effective Hamiltonian that produces equilibrium states upon variation. The stability of these states can be ascertained by a second variation. Goldstone's theorem, in its usual context, determines zero eigenvalues of the mass matrix for a given vacuum state, the equilibrium with minimum energy. Here, since for fluids and plasmas the vacuum state is uninteresting, we examine symmetry breaking for general equilibria. Broken symmetries imply directions of neutral stability. Two examples are presented: the nonlinear Alfven wave of plasma physics and the Korteweg-de Vries soliton. 46 refs
A low-barrier hydrogen bond mediates antibiotic resistance in a noncanonical catalytic triad
2018-01-01
One group of enzymes that confer resistance to aminoglycoside antibiotics through covalent modification belongs to the GCN5-related N-acetyltransferase (GNAT) superfamily. We show how a unique GNAT subfamily member uses a previously unidentified noncanonical catalytic triad, consisting of a glutamic acid, a histidine, and the antibiotic substrate itself, which acts as a nucleophile and attacks the acetyl donor molecule. Neutron diffraction studies allow for unambiguous identification of a low-barrier hydrogen bond, predicted in canonical catalytic triads to increase basicity of the histidine. This work highlights the role of this unique catalytic triad in mediating antibiotic resistance while providing new insights into the design of the next generation of aminoglycosides. PMID:29632894
A non-canonical landscape of the microRNA system
Gabriel Adelman Cipolla
2014-09-01
Full Text Available Microribonucleic acids, best known as microRNAs or miRNAs, are small, non-coding RNAs with important regulatory roles in eukaryotic cells. Here, I present a broad review about highly relevant but generally non-depicted features of miRNAs, among which stand out the non-conventional miRNA seed sites, the unusual messenger RNA (mRNA target regions, the non-canonical miRNA-guided mechanisms of gene expression regulation and the recently identified new class of miRNA ligands. Furthermore, I address the miRNA uncommon genomic location, transcription, and subcellular localization. Altogether, these unusual features and roles place the miRNA system as a very diverse, complex and intriguing biological mechanism.
IFN signaling: how a non-canonical model led to the development of IFN mimetics
Howard M Johnson
2013-07-01
Full Text Available The classical model of cytokine signaling dominates our view of specific gene activation by cytokines such as the interferons (IFNs. The importance of the model extends beyond cytokines and applies to hormones such as growth hormone (GH and insulin, and growth factors such as epidermal growth factor (EGF and fibroblast growth factor (FGF. According to this model, ligand activates the cell via interaction with the extracellular domain of the receptor. This results in activation of receptor or receptor-associated tyrosine kinases, primarily of the Janus kinase (JAK family, phosphorylation and dimerization of the STAT transcription factors, which dissociate from the receptor cytoplasmic domain and translocate to the nucleus. This view ascribes no further role to the ligand, JAK kinase, or receptor in either specific gene activation or the associated epigenetic events. The presence of dimeric STATs in the nucleus essentially explains it all. Our studies have resulted in the development of a non-canonical, more complex model of IFNγ signaling that is akin to that of steroid hormone/steroid receptor signaling. We have shown that ligand, receptor, activated JAKs and STATs are associated with specific gene activation, where the receptor subunit IFNGR1 functions as a co-transcription factor and the JAKs are involved in associated epigenetic events. We found that the type I IFN system functions similarly. The fact that GH receptor, insulin receptor, EGF receptor, and FGF receptor undergo nuclear translocation upon ligand binding suggests that they may also function similarly. The steroid hormone/steroid receptor nature of type I and II IFN signaling provides insight into the specificity of signaling by members of cytokine families. The non-canonical model could also provide better understanding to more complex cytokine families such as those of IL-2 and IL-12, whose members often use the same JAKs and STATs, but also have different functions and
XEDAR activates the non-canonical NF-κB pathway
Verhelst, Kelly; Gardam, Sandra; Borghi, Alice; Kreike, Marja; Carpentier, Isabelle; Beyaert, Rudi
2015-01-01
Members of the tumor necrosis factor receptor (TNFR) superfamily are involved in a number of physiological and pathological responses by activating a wide variety of intracellular signaling pathways. The X-linked ectodermal dysplasia receptor (XEDAR; also known as EDA2R or TNFRSF27) is a member of the TNFR superfamily that is highly expressed in ectodermal derivatives during embryonic development and binds to ectodysplasin-A2 (EDA-A2), a member of the TNF family that is encoded by the anhidrotic ectodermal dysplasia (EDA) gene. Although XEDAR was first described in the year 2000, its function and molecular mechanism of action is still largely unclear. XEDAR has been reported to activate canonical nuclear factor κB (NF-κB) signaling and mitogen-activated protein (MAP) kinases. Here we report that XEDAR is also able to trigger the non-canonical NF-κB pathway, characterized by the processing of p100 (NF-κB2) into p52, followed by nuclear translocation of p52 and RelB. We provide evidence that XEDAR-induced p100 processing relies on the binding of XEDAR to TRAF3 and TRAF6, and requires the kinase activity of NIK and IKKα. We also show that XEDAR stimulation results in NIK accumulation and that p100 processing is negatively regulated by TRAF3, cIAP1 and A20. - Highlights: • XEDAR activates the non-canonical NF-κB pathway. • XEDAR-induced processing of p100 depends on XEDAR interaction with TRAF3 and TRAF6. • XEDAR-induced processing of p100 depends on NIK and IKKα activity. • Overexpression of XEDAR leads to NIK accumulation. • XEDAR-induced processing of p100 is negatively regulated by TRAF3 cIAP1 and A20
XEDAR activates the non-canonical NF-κB pathway
Verhelst, Kelly, E-mail: Kelly.Verhelst@irc.VIB-UGent.be [Inflammation Research Center, Unit of Molecular Signal Transduction in Inflammation, VIB, Ghent (Belgium); Department of Biomedical Molecular Biology, Ghent University, Ghent (Belgium); Gardam, Sandra, E-mail: s.gardam@garvan.org.au [Inflammation Research Center, Unit of Molecular Signal Transduction in Inflammation, VIB, Ghent (Belgium); Department of Biomedical Molecular Biology, Ghent University, Ghent (Belgium); Borghi, Alice, E-mail: Alice.Borghi@irc.VIB-UGent.be [Inflammation Research Center, Unit of Molecular Signal Transduction in Inflammation, VIB, Ghent (Belgium); Department of Biomedical Molecular Biology, Ghent University, Ghent (Belgium); Kreike, Marja, E-mail: Marja.Kreike@irc.VIB-UGent.be [Inflammation Research Center, Unit of Molecular Signal Transduction in Inflammation, VIB, Ghent (Belgium); Department of Biomedical Molecular Biology, Ghent University, Ghent (Belgium); Carpentier, Isabelle, E-mail: Isabelle.Carpentier@irc.VIB-UGent.be [Inflammation Research Center, Unit of Molecular Signal Transduction in Inflammation, VIB, Ghent (Belgium); Department of Biomedical Molecular Biology, Ghent University, Ghent (Belgium); Beyaert, Rudi, E-mail: Rudi.Beyaert@irc.VIB-UGent.be [Inflammation Research Center, Unit of Molecular Signal Transduction in Inflammation, VIB, Ghent (Belgium); Department of Biomedical Molecular Biology, Ghent University, Ghent (Belgium)
2015-09-18
Members of the tumor necrosis factor receptor (TNFR) superfamily are involved in a number of physiological and pathological responses by activating a wide variety of intracellular signaling pathways. The X-linked ectodermal dysplasia receptor (XEDAR; also known as EDA2R or TNFRSF27) is a member of the TNFR superfamily that is highly expressed in ectodermal derivatives during embryonic development and binds to ectodysplasin-A2 (EDA-A2), a member of the TNF family that is encoded by the anhidrotic ectodermal dysplasia (EDA) gene. Although XEDAR was first described in the year 2000, its function and molecular mechanism of action is still largely unclear. XEDAR has been reported to activate canonical nuclear factor κB (NF-κB) signaling and mitogen-activated protein (MAP) kinases. Here we report that XEDAR is also able to trigger the non-canonical NF-κB pathway, characterized by the processing of p100 (NF-κB2) into p52, followed by nuclear translocation of p52 and RelB. We provide evidence that XEDAR-induced p100 processing relies on the binding of XEDAR to TRAF3 and TRAF6, and requires the kinase activity of NIK and IKKα. We also show that XEDAR stimulation results in NIK accumulation and that p100 processing is negatively regulated by TRAF3, cIAP1 and A20. - Highlights: • XEDAR activates the non-canonical NF-κB pathway. • XEDAR-induced processing of p100 depends on XEDAR interaction with TRAF3 and TRAF6. • XEDAR-induced processing of p100 depends on NIK and IKKα activity. • Overexpression of XEDAR leads to NIK accumulation. • XEDAR-induced processing of p100 is negatively regulated by TRAF3 cIAP1 and A20.
Canary, Jana D; Blizzard, Leigh; Barry, Ronald P; Hosmer, David W; Quinn, Stephen J
2016-05-01
Generalized linear models (GLM) with a canonical logit link function are the primary modeling technique used to relate a binary outcome to predictor variables. However, noncanonical links can offer more flexibility, producing convenient analytical quantities (e.g., probit GLMs in toxicology) and desired measures of effect (e.g., relative risk from log GLMs). Many summary goodness-of-fit (GOF) statistics exist for logistic GLM. Their properties make the development of GOF statistics relatively straightforward, but it can be more difficult under noncanonical links. Although GOF tests for logistic GLM with continuous covariates (GLMCC) have been applied to GLMCCs with log links, we know of no GOF tests in the literature specifically developed for GLMCCs that can be applied regardless of link function chosen. We generalize the Tsiatis GOF statistic originally developed for logistic GLMCCs, (TG), so that it can be applied under any link function. Further, we show that the algebraically related Hosmer-Lemeshow (HL) and Pigeon-Heyse (J(2) ) statistics can be applied directly. In a simulation study, TG, HL, and J(2) were used to evaluate the fit of probit, log-log, complementary log-log, and log models, all calculated with a common grouping method. The TG statistic consistently maintained Type I error rates, while those of HL and J(2) were often lower than expected if terms with little influence were included. Generally, the statistics had similar power to detect an incorrect model. An exception occurred when a log GLMCC was incorrectly fit to data generated from a logistic GLMCC. In this case, TG had more power than HL or J(2) . © 2015 John Wiley & Sons Ltd/London School of Economics.
Certain Inequalities Involving the Fractional q-Integral Operators
Dumitru Baleanu
2014-01-01
Full Text Available We establish some inequalities involving Saigo fractional q-integral operator in the theory of quantum calculus by using the two parameters of deformation, q1 and q2, whose special cases are shown to yield corresponding inequalities associated with Riemann-Liouville and Kober fractional q-integral operators, respectively. Furthermore, we also consider their relevance with other related known results.
Zhidkov, P.E.
1996-01-01
First, the eigenvalue problem on the segment [0,1] for the Sturm-Liouville operator with a potential depending on the spectral parameter with the zero Dirichlet boundary conditions is considered. For this problem, under some hypotheses on the potential, it is proved that the necessary and sufficient condition for an arbitrary system of eigenfunctions, possessing a unique function with n roots in the interval (0,1) for an arbitrary non-negative integer number n, being complete in the space L 2 (0,1) is the linear independence of the functions from this system in the space L 2 (0,1). Then, this result is applied to the investigation of an eigenvalue problem for a nonlinear operator on the Sturm-Liouville type. For this problem, the completeness of the system of its eigenfunctions in the space L 2 (0,1) is proved. (author). 12 refs
Dubon, Maria Jose; Yu, Jinyeong; Choi, Sanghyuk; Park, Ki-Sook
2018-01-01
Transforming growth factor-beta (TGF-β) induces the migration and mobilization of bone marrow-derived mesenchymal stem cells (BM-MSCs) to maintain bone homeostasis during bone remodeling and facilitate the repair of peripheral tissues. Although many studies have reported the mechanisms through which TGF-β mediates the migration of various types of cells, including cancer cells, the intrinsic cellular mechanisms underlying cellular migration, and mobilization of BM-MSCs mediated by TGF-β are unclear. In this study, we showed that TGF-β activated noncanonical signaling molecules, such as Akt, extracellular signal-regulated kinase 1/2 (ERK1/2), focal adhesion kinase (FAK), and p38, via TGF-β type I receptor in human BM-MSCs and murine BM-MSC-like ST2 cells. Inhibition of Rac1 by NSC23766 and Src by PP2 resulted in impaired TGF-β-mediated migration. These results suggested that the Smad-independent, noncanonical signals activated by TGF-β were necessary for migration. We also showed that N-cadherin-dependent intercellular interactions were required for TGF-β-mediated migration using functional inhibition of N-cadherin with EDTA treatment and a neutralizing antibody (GC-4 antibody) or siRNA-mediated knockdown of N-cadherin. However, N-cadherin knockdown did not affect the global activation of noncanonical signals in response to TGF-β. Therefore, these results suggested that the migration of BM-MSCs in response to TGF-β was mediated through N-cadherin and noncanonical TGF-β signals. © 2017 Wiley Periodicals, Inc.
Explicit high-order non-canonical symplectic particle-in-cell algorithms for Vlasov-Maxwell systems
Xiao, Jianyuan; Liu, Jian; He, Yang; Zhang, Ruili; Qin, Hong; Sun, Yajuan
2015-01-01
Explicit high-order non-canonical symplectic particle-in-cell algorithms for classical particle-field systems governed by the Vlasov-Maxwell equations are developed. The algorithms conserve a discrete non-canonical symplectic structure derived from the Lagrangian of the particle-field system, which is naturally discrete in particles. The electromagnetic field is spatially discretized using the method of discrete exterior calculus with high-order interpolating differential forms for a cubic grid. The resulting time-domain Lagrangian assumes a non-canonical symplectic structure. It is also gauge invariant and conserves charge. The system is then solved using a structure-preserving splitting method discovered by He et al. [preprint http://arxiv.org/abs/arXiv:1505.06076 (2015)], which produces five exactly soluble sub-systems, and high-order structure-preserving algorithms follow by combinations. The explicit, high-order, and conservative nature of the algorithms is especially suitable for long-term simulations of particle-field systems with extremely large number of degrees of freedom on massively parallel supercomputers. The algorithms have been tested and verified by the two physics problems, i.e., the nonlinear Landau damping and the electron Bernstein wave
Explicit high-order non-canonical symplectic particle-in-cell algorithms for Vlasov-Maxwell systems
Xiao, Jianyuan [School of Nuclear Science and Technology and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Geospace Environment, CAS, Hefei, Anhui 230026, China; Qin, Hong [School of Nuclear Science and Technology and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China; Plasma Physics Laboratory, Princeton University, Princeton, New Jersey 08543, USA; Liu, Jian [School of Nuclear Science and Technology and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Geospace Environment, CAS, Hefei, Anhui 230026, China; He, Yang [School of Nuclear Science and Technology and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Geospace Environment, CAS, Hefei, Anhui 230026, China; Zhang, Ruili [School of Nuclear Science and Technology and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China; Key Laboratory of Geospace Environment, CAS, Hefei, Anhui 230026, China; Sun, Yajuan [LSEC, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, P.O. Box 2719, Beijing 100190, China
2015-11-01
Explicit high-order non-canonical symplectic particle-in-cell algorithms for classical particle-field systems governed by the Vlasov-Maxwell equations are developed. The algorithms conserve a discrete non-canonical symplectic structure derived from the Lagrangian of the particle-field system, which is naturally discrete in particles. The electromagnetic field is spatially discretized using the method of discrete exterior calculus with high-order interpolating differential forms for a cubic grid. The resulting time-domain Lagrangian assumes a non-canonical symplectic structure. It is also gauge invariant and conserves charge. The system is then solved using a structure-preserving splitting method discovered by He et al. [preprint arXiv: 1505.06076 (2015)], which produces five exactly soluble sub-systems, and high-order structure-preserving algorithms follow by combinations. The explicit, high-order, and conservative nature of the algorithms is especially suitable for long-term simulations of particle-field systems with extremely large number of degrees of freedom on massively parallel supercomputers. The algorithms have been tested and verified by the two physics problems, i.e., the nonlinear Landau damping and the electron Bernstein wave. (C) 2015 AIP Publishing LLC.
Extending the D’alembert solution to space–time Modified Riemann–Liouville fractional wave equations
Godinho, Cresus F.L.; Weberszpil, J.; Helayël-Neto, J.A.
2012-01-01
In the realm of complexity, it is argued that adequate modeling of TeV-physics demands an approach based on fractal operators and fractional calculus (FC). Non-local theories and memory effects are connected to complexity and the FC. The non-differentiable nature of the microscopic dynamics may be connected with time scales. Based on the Modified Riemann–Liouville definition of fractional derivatives, we have worked out explicit solutions to a fractional wave equation with suitable initial conditions to carefully understand the time evolution of classical fields with a fractional dynamics. First, by considering space–time partial fractional derivatives of the same order in time and space, a generalized fractional D’alembertian is introduced and by means of a transformation of variables to light-cone coordinates, an explicit analytical solution is obtained. To address the situation of different orders in the time and space derivatives, we adopt different approaches, as it will become clear throughout this paper. Aspects connected to Lorentz symmetry are analyzed in both approaches.
Wirtz, Ludger; Reinhold, Carlos O.; Lemell, Christoph; Burgdoerfer, Joachim
2003-01-01
We present a simulation of the neutralization of highly charged ions in front of a lithium fluoride surface including the close-collision regime above the surface. The present approach employs a Monte Carlo solution of the Liouville master equation for the joint probability density of the ionic motion and the electronic population of the projectile and the target surface. It includes single as well as double particle-hole (de)excitation processes and incorporates electron correlation effects through the conditional dynamics of population strings. The input in terms of elementary one- and two-electron transfer rates is determined from classical trajectory Monte Carlo calculations as well as quantum-mechanical Auger calculations. For slow projectiles and normal incidence, the ionic motion depends sensitively on the interplay between image acceleration towards the surface and repulsion by an ensemble of positive hole charges in the surface ('trampoline effect'). For Ne 10+ we find that image acceleration is dominant and no collective backscattering high above the surface takes place. For grazing incidence, our simulation delineates the pathways to complete neutralization. In accordance with recent experimental observations, most ions are reflected as neutral or even as singly charged negative particles, irrespective of the charge state of the incoming ions
Iglesias, Nestor G; Mondotte, Juan A; Byk, Laura A; De Maio, Federico A; Samsa, Marcelo M; Alvarez, Cecilia; Gamarnik, Andrea V
2015-09-01
Dengue viruses cause the most important human viral disease transmitted by mosquitoes. In recent years, a great deal has been learned about molecular details of dengue virus genome replication; however, little is known about genome encapsidation and the functions of the viral capsid protein. During infection, dengue virus capsid progressively accumulates around lipid droplets (LDs) by an unknown mechanism. Here, we examined the process by which the viral capsid is transported from the endoplasmic reticulum (ER) membrane, where the protein is synthesized, to LDs. Using different methods of intervention, we found that the GBF1-Arf1/Arf4-COPI pathway is necessary for capsid transport to LDs, while the process is independent of both COPII components and Golgi integrity. The transport was sensitive to Brefeldin A, while a drug resistant form of GBF1 was sufficient to restore capsid subcellular distribution in infected cells. The mechanism by which LDs gain or lose proteins is still an open question. Our results support a model in which the virus uses a non-canonical function of the COPI system for capsid accumulation on LDs, providing new ideas for antiviral strategies. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
cGAS drives noncanonical-inflammasome activation in age-related macular degeneration.
Kerur, Nagaraj; Fukuda, Shinichi; Banerjee, Daipayan; Kim, Younghee; Fu, Dongxu; Apicella, Ivana; Varshney, Akhil; Yasuma, Reo; Fowler, Benjamin J; Baghdasaryan, Elmira; Marion, Kenneth M; Huang, Xiwen; Yasuma, Tetsuhiro; Hirano, Yoshio; Serbulea, Vlad; Ambati, Meenakshi; Ambati, Vidya L; Kajiwara, Yuji; Ambati, Kameshwari; Hirahara, Shuichiro; Bastos-Carvalho, Ana; Ogura, Yuichiro; Terasaki, Hiroko; Oshika, Tetsuro; Kim, Kyung Bo; Hinton, David R; Leitinger, Norbert; Cambier, John C; Buxbaum, Joseph D; Kenney, M Cristina; Jazwinski, S Michal; Nagai, Hiroshi; Hara, Isao; West, A Phillip; Fitzgerald, Katherine A; Sadda, SriniVas R; Gelfand, Bradley D; Ambati, Jayakrishna
2018-01-01
Geographic atrophy is a blinding form of age-related macular degeneration characterized by retinal pigmented epithelium (RPE) death; the RPE also exhibits DICER1 deficiency, resultant accumulation of endogenous Alu-retroelement RNA, and NLRP3-inflammasome activation. How the inflammasome is activated in this untreatable disease is largely unknown. Here we demonstrate that RPE degeneration in human-cell-culture and mouse models is driven by a noncanonical-inflammasome pathway that activates caspase-4 (caspase-11 in mice) and caspase-1, and requires cyclic GMP-AMP synthase (cGAS)-dependent interferon-β production and gasdermin D-dependent interleukin-18 secretion. Decreased DICER1 levels or Alu-RNA accumulation triggers cytosolic escape of mitochondrial DNA, which engages cGAS. Moreover, caspase-4, gasdermin D, interferon-β, and cGAS levels were elevated in the RPE in human eyes with geographic atrophy. Collectively, these data highlight an unexpected role of cGAS in responding to mobile-element transcripts, reveal cGAS-driven interferon signaling as a conduit for mitochondrial-damage-induced inflammasome activation, expand the immune-sensing repertoire of cGAS and caspase-4 to noninfectious human disease, and identify new potential targets for treatment of a major cause of blindness.
Canonical and non-canonical barriers facing antimiR cancer therapeutics.
Cheng, Christopher J; Saltzman, W Mark; Slack, Frank J
2013-01-01
Once considered genetic "oddities", microRNAs (miRNAs) are now recognized as key epigenetic regulators of numerous biological processes, including some with a causal link to the pathogenesis, maintenance, and treatment of cancer. The crux of small RNA-based therapeutics lies in the antagonism of potent cellular targets; the main shortcoming of the field in general, lies in ineffective delivery. Inhibition of oncogenic miRNAs is a relatively nascent therapeutic concept, but as with predecessor RNA-based therapies, success hinges on delivery efficacy. This review will describes the canonical (e.g. pharmacokinetics and clearance, cellular uptake, endosome escape, etc.) and non-canonical (e.g. spatial localization and accessibility of miRNA, technical limitations of miRNA inhibition, off-target impacts, etc.) challenges to the delivery of antisense-based anti-miRNA therapeutics (i.e. antimiRs) for the treatment of cancer. Emphasis will be placed on how the current leading antimiR platforms-ranging from naked chemically modified oligonucleotides to nanoscale delivery vehicles-are affected by and overcome these barriers. The perplexity of antimiR delivery presents both engineering and biological hurdles that must be overcome in order to capitalize on the extensive pharmacological benefits of antagonizing tumor-associated miRNAs.
Noncanonical regulation of alkylation damage resistance by the OTUD4 deubiquitinase.
Zhao, Yu; Majid, Mona C; Soll, Jennifer M; Brickner, Joshua R; Dango, Sebastian; Mosammaparast, Nima
2015-06-12
Repair of DNA alkylation damage is critical for genomic stability and involves multiple conserved enzymatic pathways. Alkylation damage resistance, which is critical in cancer chemotherapy, depends on the overexpression of alkylation repair proteins. However, the mechanisms responsible for this upregulation are unknown. Here, we show that an OTU domain deubiquitinase, OTUD4, is a positive regulator of ALKBH2 and ALKBH3, two DNA demethylases critical for alkylation repair. Remarkably, we find that OTUD4 catalytic activity is completely dispensable for this function. Rather, OTUD4 is a scaffold for USP7 and USP9X, two deubiquitinases that act directly on the AlkB proteins. Moreover, we show that loss of OTUD4, USP7, or USP9X in tumor cells makes them significantly more sensitive to alkylating agents. Taken together, this work reveals a novel, noncanonical mechanism by which an OTU family deubiquitinase regulates its substrates, and provides multiple new targets for alkylation chemotherapy sensitization of tumors. © 2015 The Authors.
Ana Crnković
2018-02-01
Full Text Available Synthesis of proteins with noncanonical amino acids (ncAAs enables the creation of protein-based biomaterials with diverse new chemical properties that may be attractive for material science. Current methods for large-scale production of ncAA-containing proteins, frequently carried out in Escherichia coli, involve the use of orthogonal aminoacyl-tRNA synthetases (o-aaRSs and tRNAs (o-tRNAs. Although o-tRNAs are designed to be orthogonal to endogenous aaRSs, their orthogonality to the components of the E. coli metabolism remains largely unexplored. We systematically investigated how the E. coli tRNA modification machinery affects the efficiency and orthogonality of o-tRNASep used for production of proteins with the ncAA O-phosphoserine (Sep. The incorporation of Sep into a green fluorescent protein (GFP in 42 E. coli strains carrying deletions of single tRNA modification genes identified several genes that affect the o-tRNA activity. Deletion of cysteine desulfurase (iscS increased the yield of Sep-containing GFP more than eightfold, while overexpression of dimethylallyltransferase MiaA and pseudouridine synthase TruB improved the specificity of Sep incorporation. These results highlight the importance of tRNA modifications for the biosynthesis of proteins containing ncAAs, and provide a novel framework for optimization of o-tRNAs.
Emerek, Ruth
2004-01-01
Bidraget diskuterer de forskellige intergrationsopfattelse i Danmark - og hvad der kan forstås ved vellykket integration......Bidraget diskuterer de forskellige intergrationsopfattelse i Danmark - og hvad der kan forstås ved vellykket integration...
A geometrical method towards first integrals for dynamical systems
Labrunie, S.; Conte, R.
1996-01-01
We develop a method, based on Darboux close-quote s and Liouville close-quote s works, to find first integrals and/or invariant manifolds for a physically relevant class of dynamical systems, without making any assumption on these elements close-quote forms. We apply it to three dynamical systems: Lotka endash Volterra, Lorenz and Rikitake. copyright 1996 American Institute of Physics
Lax Pairs for Discrete Integrable Equations via Darboux Transformations
Cao Ce-Wen; Zhang Guang-Yao
2012-01-01
A method is developed to construct discrete Lax pairs using Darboux transformations. More kinds of Lax pairs are found for some newly appeared discrete integrable equations, including the H1, the special H3 and the Q1 models in the Adler—Bobenko—Suris list and the closely related discrete and semi-discrete pKdV, pMKdV, SG and Liouville equations. (general)
Gómez Rodríguez, Rafael Ángel
2014-01-01
To say that someone possesses integrity is to claim that that person is almost predictable about responses to specific situations, that he or she can prudentially judge and to act correctly. There is a closed interrelationship between integrity and autonomy, and the autonomy rests on the deeper moral claim of all humans to integrity of the person. Integrity has two senses of significance for medical ethic: one sense refers to the integrity of the person in the bodily, psychosocial and intellectual elements; and in the second sense, the integrity is the virtue. Another facet of integrity of the person is la integrity of values we cherish and espouse. The physician must be a person of integrity if the integrity of the patient is to be safeguarded. The autonomy has reduced the violations in the past, but the character and virtues of the physician are the ultimate safeguard of autonomy of patient. A field very important in medicine is the scientific research. It is the character of the investigator that determines the moral quality of research. The problem arises when legitimate self-interests are replaced by selfish, particularly when human subjects are involved. The final safeguard of moral quality of research is the character and conscience of the investigator. Teaching must be relevant in the scientific field, but the most effective way to teach virtue ethics is through the example of the a respected scientist.
Gan, Rui; Perez, Jessica G; Carlson, Erik D; Ntai, Ioanna; Isaacs, Farren J; Kelleher, Neil L; Jewett, Michael C
2017-05-01
The ability to site-specifically incorporate non-canonical amino acids (ncAAs) into proteins has made possible the study of protein structure and function in fundamentally new ways, as well as the bio synthesis of unnatural polymers. However, the task of site-specifically incorporating multiple ncAAs into proteins with high purity and yield continues to present a challenge. At the heart of this challenge lies the lower efficiency of engineered orthogonal translation system components compared to their natural counterparts (e.g., translation elements that specifically use a ncAA and do not interact with the cell's natural translation apparatus). Here, we show that evolving and tuning expression levels of multiple components of an engineered translation system together as a whole enhances ncAA incorporation efficiency. Specifically, we increase protein yield when incorporating multiple p-azido-phenylalanine(pAzF) residues into proteins by (i) evolving the Methanocaldococcus jannaschii p-azido-phenylalanyl-tRNA synthetase anti-codon binding domain, (ii) evolving the elongation factor Tu amino acid-binding pocket, and (iii) tuning the expression of evolved translation machinery components in a single vector. Use of the evolved translation machinery in a genomically recoded organism lacking release factor one enabled enhanced multi-site ncAA incorporation into proteins. We anticipate that our approach to orthogonal translation system development will accelerate and expand our ability to site-specifically incorporate multiple ncAAs into proteins and biopolymers, advancing new horizons for synthetic and chemical biotechnology. Biotechnol. Bioeng. 2017;114: 1074-1086. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.
Rationally evolving tRNAPyl for efficient incorporation of noncanonical amino acids.
Fan, Chenguang; Xiong, Hai; Reynolds, Noah M; Söll, Dieter
2015-12-15
Genetic encoding of noncanonical amino acids (ncAAs) into proteins is a powerful approach to study protein functions. Pyrrolysyl-tRNA synthetase (PylRS), a polyspecific aminoacyl-tRNA synthetase in wide use, has facilitated incorporation of a large number of different ncAAs into proteins to date. To make this process more efficient, we rationally evolved tRNA(Pyl) to create tRNA(Pyl-opt) with six nucleotide changes. This improved tRNA was tested as substrate for wild-type PylRS as well as three characterized PylRS variants (N(ϵ)-acetyllysyl-tRNA synthetase [AcKRS], 3-iodo-phenylalanyl-tRNA synthetase [IFRS], a broad specific PylRS variant [PylRS-AA]) to incorporate ncAAs at UAG codons in super-folder green fluorescence protein (sfGFP). tRNA(Pyl-opt) facilitated a 5-fold increase in AcK incorporation into two positions of sfGFP simultaneously. In addition, AcK incorporation into two target proteins (Escherichia coli malate dehydrogenase and human histone H3) caused homogenous acetylation at multiple lysine residues in high yield. Using tRNA(Pyl-opt) with PylRS and various PylRS variants facilitated efficient incorporation of six other ncAAs into sfGFP. Kinetic analyses revealed that the mutations in tRNA(Pyl-opt) had no significant effect on the catalytic efficiency and substrate binding of PylRS enzymes. Thus tRNA(Pyl-opt) should be an excellent replacement of wild-type tRNA(Pyl) for future ncAA incorporation by PylRS enzymes. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.
Increasing the fidelity of noncanonical amino acid incorporation in cell-free protein synthesis.
Gan, Qinglei; Fan, Chenguang
2017-11-01
Cell-free protein synthesis provides a robust platform for co-translational incorporation of noncanonical amino acid (ncAA) into proteins to facilitate biological studies and biotechnological applications. Recently, eliminating the activity of release factor 1 has been shown to increase ncAA incorporation in response to amber codons. However, this approach could promote mis-incorporation of canonical amino acids by near cognate suppression. We performed a facile protocol to remove near cognate tRNA isoacceptors of the amber codon from total tRNAs, and used the phosphoserine (Sep) incorporation system as validation. By manipulating codon usage of target genes and tRNA species introduced into the cell-free protein synthesis system, we increased the fidelity of Sep incorporation at a specific position. By removing three near cognate tRNA isoacceptors of the amber stop codon [tRNA Lys , tRNA Tyr , and tRNA Gln (CUG)] from the total tRNA, the near cognate suppression decreased by 5-fold without impairing normal protein synthesis in the cell-free protein synthesis system. Mass spectrometry analyses indicated that the fidelity of ncAA incorporation was improved. Removal of near cognate tRNA isoacceptors of the amber codon could increase ncAA incorporation fidelity towards the amber stop codon in release factor deficiency systems. We provide a general strategy to improve fidelity of ncAA incorporation towards stop, quadruplet and sense codons in cell-free protein synthesis systems. This article is part of a Special Issue entitled "Biochemistry of Synthetic Biology - Recent Developments" Guest Editor: Dr. Ilka Heinemann and Dr. Patrick O'Donoghue. Copyright © 2016 Elsevier B.V. All rights reserved.
Krejčiřík, David; Siegl, Petr; Železný, Jakub
2014-01-01
Roč. 8, č. 1 (2014), s. 255-281 ISSN 1661-8254 R&D Projects: GA MŠk LC06002; GA MŠk LC527; GA ČR GAP203/11/0701 Grant - others:GA ČR(CZ) GD202/08/H072 Institutional support: RVO:61389005 Keywords : Sturm-Liouville operators * non-symmetric Robin boundary conditions * similarity to normal or self-adjoint operators * discrete spectral operator * complex symmetric operator * PT-symmetry * metric operator * C operator * Hilbert- Schmidt operators Subject RIV: BE - Theoretical Physics Impact factor: 0.545, year: 2014
Fuster, José J; Zuriaga, María A; Ngo, Doan Thi-Minh; Farb, Melissa G; Aprahamian, Tamar; Yamaguchi, Terry P; Gokce, Noyan; Walsh, Kenneth
2015-04-01
Adipose tissue dysfunction plays a pivotal role in the development of insulin resistance in obese individuals. Cell culture studies and gain-of-function mouse models suggest that canonical Wnt proteins modulate adipose tissue expansion. However, no genetic evidence supports a role for endogenous Wnt proteins in adipose tissue dysfunction, and the role of noncanonical Wnt signaling remains largely unexplored. Here we provide evidence from human, mouse, and cell culture studies showing that Wnt5a-mediated, noncanonical Wnt signaling contributes to obesity-associated metabolic dysfunction by increasing adipose tissue inflammation. Wnt5a expression is significantly upregulated in human visceral fat compared with subcutaneous fat in obese individuals. In obese mice, Wnt5a ablation ameliorates insulin resistance, in parallel with reductions in adipose tissue inflammation. Conversely, Wnt5a overexpression in myeloid cells augments adipose tissue inflammation and leads to greater impairments in glucose homeostasis. Wnt5a ablation or overexpression did not affect fat mass or adipocyte size. Mechanistically, Wnt5a promotes the expression of proinflammatory cytokines by macrophages in a Jun NH2-terminal kinase-dependent manner, leading to defective insulin signaling in adipocytes. Exogenous interleukin-6 administration restores insulin resistance in obese Wnt5a-deficient mice, suggesting a central role for this cytokine in Wnt5a-mediated metabolic dysfunction. Taken together, these results demonstrate that noncanonical Wnt signaling contributes to obesity-induced insulin resistance independent of adipose tissue expansion. © 2015 by the American Diabetes Association. Readers may use this article as long as the work is properly cited, the use is educational and not for profit, and the work is not altered.
Santiago, Francisco; Oguma, Junya; Brown, Anthony M.C.; Laurence, Jeffrey
2012-01-01
Highlights: ► First demonstration of direct role for noncanonical Wnt in osteoclast differentiation. ► Demonstration of Ryk as a Wnt5a/b receptor in inhibition of canonical Wnt signaling. ► Modulation of noncanonical Wnt signaling by a clinically important drug, ritonavir. ► Establishes a mechanism for an important clinical problem: HIV-associated bone loss. -- Abstract: Wnt proteins that signal via the canonical Wnt/β-catenin pathway directly regulate osteoblast differentiation. In contrast, most studies of Wnt-related effects on osteoclasts involve indirect changes. While investigating bone mineral density loss in the setting of human immunodeficiency virus (HIV) infection and its treatment with the protease inhibitor ritonavir (RTV), we observed that RTV decreased nuclear localization of β-catenin, critical to canonical Wnt signaling, in primary human and murine osteoclast precursors. This occurred in parallel with upregulation of Wnt5a and Wnt5b transcripts. These Wnts typically stimulate noncanonical Wnt signaling, and this can antagonize the canonical Wnt pathway in many cell types, dependent upon Wnt receptor usage. We now document RTV-mediated upregulation of Wnt5a/b protein in osteoclast precursors. Recombinant Wnt5b and retrovirus-mediated expression of Wnt5a enhanced osteoclast differentiation from human and murine monocytic precursors, processes facilitated by RTV. In contrast, canonical Wnt signaling mediated by Wnt3a suppressed osteoclastogenesis. Both RTV and Wnt5b inhibited canonical, β-catenin/T cell factor-based Wnt reporter activation in osteoclast precursors. RTV- and Wnt5-induced osteoclast differentiation were dependent upon the receptor-like tyrosine kinase Ryk, suggesting that Ryk may act as a Wnt5a/b receptor in this context. This is the first demonstration of a direct role for Wnt signaling pathways and Ryk in regulation of osteoclast differentiation, and its modulation by a clinically important drug, ritonavir. These studies
Tateishi-Karimata, Hisae; Isono, Noburu; Sugimoto, Naoki
2014-01-01
The thermal stability and topology of non-canonical structures of G-quadruplexes and hairpins in template DNA were investigated, and the effect of non-canonical structures on transcription fidelity was evaluated quantitatively. We designed ten template DNAs: A linear sequence that does not have significant higher-order structure, three sequences that form hairpin structures, and six sequences that form G-quadruplex structures with different stabilities. Templates with non-canonical structures induced the production of an arrested, a slipped, and a full-length transcript, whereas the linear sequence produced only a full-length transcript. The efficiency of production for run-off transcripts (full-length and slipped transcripts) from templates that formed the non-canonical structures was lower than that from the linear. G-quadruplex structures were more effective inhibitors of full-length product formation than were hairpin structure even when the stability of the G-quadruplex in an aqueous solution was the same as that of the hairpin. We considered that intra-polymerase conditions may differentially affect the stability of non-canonical structures. The values of transcription efficiencies of run-off or arrest transcripts were correlated with stabilities of non-canonical structures in the intra-polymerase condition mimicked by 20 wt% polyethylene glycol (PEG). Transcriptional arrest was induced when the stability of the G-quadruplex structure (-ΔG°37) in the presence of 20 wt% PEG was more than 8.2 kcal mol(-1). Thus, values of stability in the presence of 20 wt% PEG are an important indicator of transcription perturbation. Our results further our understanding of the impact of template structure on the transcription process and may guide logical design of transcription-regulating drugs.
Kim, Byeong-Moo [Department of Medicine/GI Unit, Massachusetts General Hospital, Boston, MA 02114 (United States); Department of Medicine, Harvard Medical School, Boston, MA 02115 (United States); Choi, Michael Y., E-mail: mchoi@partners.org [Department of Medicine/GI Unit, Massachusetts General Hospital, Boston, MA 02114 (United States); Department of Medicine, Harvard Medical School, Boston, MA 02115 (United States); Harvard Stem Cell Institute, Boston, MA 02114 (United States)
2012-09-21
Highlights: Black-Right-Pointing-Pointer Embryonic stem cells (ESCs) lacking non-canonical miRNAs proliferate slower. Black-Right-Pointing-Pointer miR-320 and miR-702 are two non-canonical miRNAs expressed in ESCs. Black-Right-Pointing-Pointer miR-320 and miR-702 promote proliferation of Dgcr8-deficient ESCs. Black-Right-Pointing-Pointer miR-320 targets p57 and helps to release Dgcr8-deficient ESCs from G1 arrest. Black-Right-Pointing-Pointer miR-702 targets p21 and helps to release Dgcr8-deficient ESCs from G1 arrest. -- Abstract: MicroRNAs are known to contribute significantly to stem cell phenotype by post-transcriptionally regulating gene expression. Most of our knowledge of microRNAs comes from the study of canonical microRNAs that require two sequential cleavages by the Drosha/Dgcr8 heterodimer and Dicer to generate mature products. In contrast, non-canonical microRNAs bypass the cleavage by the Drosha/Dgcr8 heterodimer within the nucleus but still require cytoplasmic cleavage by Dicer. The function of non-canonical microRNAs in embryonic stem cells (ESCs) remains obscure. It has been hypothesized that non-canonical microRNAs have important roles in ESCs based upon the phenotypes of ESC lines that lack these specific classes of microRNAs; Dicer-deficient ESCs lacking both canonical and non-canonical microRNAs have much more severe proliferation defect than Dgcr8-deficient ESCs lacking only canonical microRNAs. Using these cell lines, we identified two non-canonical microRNAs, miR-320 and miR-702, that promote proliferation of Dgcr8-deficient ESCs by releasing them from G1 arrest. This is accomplished by targeting the 3 Prime -untranslated regions of the cell cycle inhibitors p57 and p21 and thereby inhibiting their expression. This is the first report of the crucial role of non-canonical microRNAs in ESCs.
Kim, Byeong-Moo; Choi, Michael Y.
2012-01-01
Highlights: ► Embryonic stem cells (ESCs) lacking non-canonical miRNAs proliferate slower. ► miR-320 and miR-702 are two non-canonical miRNAs expressed in ESCs. ► miR-320 and miR-702 promote proliferation of Dgcr8-deficient ESCs. ► miR-320 targets p57 and helps to release Dgcr8-deficient ESCs from G1 arrest. ► miR-702 targets p21 and helps to release Dgcr8-deficient ESCs from G1 arrest. -- Abstract: MicroRNAs are known to contribute significantly to stem cell phenotype by post-transcriptionally regulating gene expression. Most of our knowledge of microRNAs comes from the study of canonical microRNAs that require two sequential cleavages by the Drosha/Dgcr8 heterodimer and Dicer to generate mature products. In contrast, non-canonical microRNAs bypass the cleavage by the Drosha/Dgcr8 heterodimer within the nucleus but still require cytoplasmic cleavage by Dicer. The function of non-canonical microRNAs in embryonic stem cells (ESCs) remains obscure. It has been hypothesized that non-canonical microRNAs have important roles in ESCs based upon the phenotypes of ESC lines that lack these specific classes of microRNAs; Dicer-deficient ESCs lacking both canonical and non-canonical microRNAs have much more severe proliferation defect than Dgcr8-deficient ESCs lacking only canonical microRNAs. Using these cell lines, we identified two non-canonical microRNAs, miR-320 and miR-702, that promote proliferation of Dgcr8-deficient ESCs by releasing them from G1 arrest. This is accomplished by targeting the 3′-untranslated regions of the cell cycle inhibitors p57 and p21 and thereby inhibiting their expression. This is the first report of the crucial role of non-canonical microRNAs in ESCs.
Topological classification of the Goryachev integrable case in rigid body dynamics
Nikolaenko, S S
2016-01-01
A topological analysis of the Goryachev integrable case in rigid body dynamics is made on the basis of the Fomenko-Zieschang theory. The invariants (marked molecules) which are obtained give a complete description, from the standpoint of Liouville classification, of the systems of Goryachev type on various level sets of the energy. It turns out that on appropriate energy levels the Goryachev case is Liouville equivalent to many classical integrable systems and, in particular, the Joukowski, Clebsch, Sokolov and Kovalevskaya-Yehia cases in rigid body dynamics, as well as to some integrable billiards in plane domains bounded by confocal quadrics -- in other words, the foliations given by the closures of generic solutions of these systems have the same structure. Bibliography: 15 titles
Stepping towards new parameterizations for non-canonical atmospheric surface-layer conditions
Calaf, M.; Margairaz, F.; Pardyjak, E.
2017-12-01
-dynamics parameter is introduced to differentiate dispersive fluxes driven by surface thermal heterogeneities from those induced by surface shear. We believe that results from this research are a first step in developing new parameterizations appropriate for non-canonical ASL conditions.
Puzynin, I.V.; Puzynina, T.P.; Tkhak, V.Ch.
2010-01-01
SLIPM (Sturm-LIouville Problem in MAPLE) is a program complex written in the language of the computer algebras system MAPLE. It consists of the main program SLIPM.mw and of some procedures. It is intended for a numerical solution with the help of the continuous analog of Newton's method (CANM) of Sturm-Liouville partial problems, i.e. for calculating some eigenvalue of linear second-order differential operator and a corresponding eigenfunction satisfying homogeneous boundary conditions of the general type. SLIPM is the development of the program complexes SLIP1 and SLIPH4 written in the Fortran language. It is added by two new ways of calculating the initial value of iterative parameter τ 0 , by a procedure for calculating a higher precision solution (eigenvalue and corresponding eigenfunction) with the help of Richardson's extrapolation method, by graphical visualization procedures of intermediate and final results of the iterative process and by saving of the results on a disk file. The descriptions of the procedures purposes and their parameters are given
Owolabi, Kolade M.
2018-03-01
In this work, we are concerned with the solution of non-integer space-fractional reaction-diffusion equations with the Riemann-Liouville space-fractional derivative in high dimensions. We approximate the Riemann-Liouville derivative with the Fourier transform method and advance the resulting system in time with any time-stepping solver. In the numerical experiments, we expect the travelling wave to arise from the given initial condition on the computational domain (-∞, ∞), which we terminate in the numerical experiments with a large but truncated value of L. It is necessary to choose L large enough to allow the waves to have enough space to distribute. Experimental results in high dimensions on the space-fractional reaction-diffusion models with applications to biological models (Fisher and Allen-Cahn equations) are considered. Simulation results reveal that fractional reaction-diffusion equations can give rise to a range of physical phenomena when compared to non-integer-order cases. As a result, most meaningful and practical situations are found to be modelled with the concept of fractional calculus.
Bhattacharyya, Dhananjay; Halder, Sukanya; Basu, Sankar; Mukherjee, Debasish; Kumar, Prasun; Bansal, Manju
2017-02-01
Comprehensive analyses of structural features of non-canonical base pairs within a nucleic acid double helix are limited by the availability of a small number of three dimensional structures. Therefore, a procedure for model building of double helices containing any given nucleotide sequence and base pairing information, either canonical or non-canonical, is seriously needed. Here we describe a program RNAHelix, which is an updated version of our widely used software, NUCGEN. The program can regenerate duplexes using the dinucleotide step and base pair orientation parameters for a given double helical DNA or RNA sequence with defined Watson-Crick or non-Watson-Crick base pairs. The original structure and the corresponding regenerated structure of double helices were found to be very close, as indicated by the small RMSD values between positions of the corresponding atoms. Structures of several usual and unusual double helices have been regenerated and compared with their original structures in terms of base pair RMSD, torsion angles and electrostatic potentials and very high agreements have been noted. RNAHelix can also be used to generate a structure with a sequence completely different from an experimentally determined one or to introduce single to multiple mutation, but with the same set of parameters and hence can also be an important tool in homology modeling and study of mutation induced structural changes.
4-Hydroxynonenal activates Src through a non-canonical pathway that involves EGFR/PTP1B
Zhang, Hongqiao; Forman, Henry Jay
2015-01-01
Src, a non-receptor protein tyrosine kinase involved in many biological processes, can be activated through both redox-dependent and independent mechanisms. 4-Hydroxy-2-nonenal (HNE) is a lipid peroxidation product that is increased in pathophysiological conditions associated with Src activation. This study examined how HNE activates human c-Src. In the canonical pathway Src activation is initiated by dephosphorylation of pTyr530 followed by conformational change that causes Src auto-phosphorylation at Tyr419 and its activation. HNE increased Src activation in both dose- and time-dependent manner, while it also increased Src phosphorylation at Tyr530 (pTyr530 Src), suggesting that HNE activated Src via a non-canonical mechanism. Protein tyrosine phosphatase 1B inhibitor (539741), at concentrations that increased basal pTyr530 Src, also increased basal Src activity and significantly reduced HNE-mediated Src activation. The EGFR inhibitor, AG1478, and EGFR silencing, abrogated HNE-mediated EGFR activation and inhibited basal and HNE-induced Src activity. In addition, AG1478 also eliminated the increase of basal Src activation by a PTP1B inhibitor. Taken together these data suggest that HNE can activate Src partly through a non-canonical pathway involving activation of EGFR and inhibition of PTP1B. PMID:26453921
Diner, Elie J; Burdette, Dara L; Wilson, Stephen C; Monroe, Kathryn M; Kellenberger, Colleen A; Hyodo, Mamoru; Hayakawa, Yoshihiro; Hammond, Ming C; Vance, Russell E
2013-05-30
The presence of foreign DNA in the cytosol of mammalian cells elicits a potent antiviral interferon response. Recently, cytosolic DNA was proposed to induce the synthesis of cyclic GMP-AMP (cGAMP) upon binding to an enzyme called cGAMP synthase (cGAS). cGAMP activates an interferon response by binding to a downstream receptor called STING. Here, we identify natural variants of human STING (hSTING) that are poorly responsive to cGAMP yet, unexpectedly, are normally responsive to DNA and cGAS signaling. We explain this paradox by demonstrating that the cGAS product is actually a noncanonical cyclic dinucleotide, cyclic [G(2'-5')pA(3'-5')p], which contains a single 2'-5' phosphodiester bond. Cyclic [G(2'-5')pA(3'-5')p] potently activates diverse hSTING receptors and, therefore, may be a useful adjuvant or immunotherapeutic. Our results indicate that hSTING variants have evolved to distinguish conventional (3'-5') cyclic dinucleotides, known to be produced mainly by bacteria, from the noncanonical cyclic dinucleotide produced by mammalian cGAS. Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.
Elie J. Diner
2013-05-01
Full Text Available The presence of foreign DNA in the cytosol of mammalian cells elicits a potent antiviral interferon response. Recently, cytosolic DNA was proposed to induce the synthesis of cyclic GMP-AMP (cGAMP upon binding to an enzyme called cGAMP synthase (cGAS. cGAMP activates an interferon response by binding to a downstream receptor called STING. Here, we identify natural variants of human STING (hSTING that are poorly responsive to cGAMP yet, unexpectedly, are normally responsive to DNA and cGAS signaling. We explain this paradox by demonstrating that the cGAS product is actually a noncanonical cyclic dinucleotide, cyclic [G(2′-5′pA(3′-5′p], which contains a single 2′-5′ phosphodiester bond. Cyclic [G(2′-5′pA(3′-5′p] potently activates diverse hSTING receptors and, therefore, may be a useful adjuvant or immunotherapeutic. Our results indicate that hSTING variants have evolved to distinguish conventional (3′-5′ cyclic dinucleotides, known to be produced mainly by bacteria, from the noncanonical cyclic dinucleotide produced by mammalian cGAS.
Canonical and Non-Canonical NF-κB Signaling Promotes Breast Cancer Tumor-Initiating Cells
Kendellen, Megan F.; Bradford, Jennifer W.; Lawrence, Cortney L.; Clark, Kelly S.; Baldwin, Albert S.
2014-01-01
Tumor-initiating cells (TICs) are a sub-population of cells that exhibit a robust ability to self-renew and contribute to the formation of primary tumors, the relapse of previously treated tumors, and the development of metastases. TICs have been identified in various tumors, including those of the breast, and are particularly enriched in the basal-like and claudin-low subtypes of breast cancer. The signaling pathways that contribute to the function and maintenance of TICs are under intense study. We explored the potential involvement of the NF-κB family of transcription factors in TICs in cell lines that are representative of basal-like and claudin-low breast cancer. NF-κB was found to be activated in breast cancer cells that form tumorspheres efficiently. Moreover, both canonical and non-canonical NF-κB signaling is required for these cells to self-renew in vitro and to form xenograft tumors efficiently in vivo using limiting dilutions of cells. Consistent with this, canonical and non-canonical NF-κB signaling is activated in TICs isolated from breast cancer cell lines. Experimental results indicate that NF-κB promotes the function of TICs by stimulating epithelial-to-mesenchymal transition (EMT) and by upregulating the expression of the inflammatory cytokines IL-1β and IL-6. The results suggest the use of NF-κB inhibitors for clinical therapy of certain breast cancers. PMID:23474754
Yamamoto, Shouji; Mitobe, Jiro; Ishikawa, Takahiko; Wai, Sun Nyunt; Ohnishi, Makoto; Watanabe, Haruo; Izumiya, Hidemasa
2014-01-01
In Vibrio cholerae, 41 chitin-inducible genes, including the genes involved in natural competence for DNA uptake, are governed by the orphan two-component system (TCS) sensor kinase ChiS. However, the mechanism by which ChiS controls the expression of these genes is currently unknown. Here, we report the involvement of a novel transcription factor termed 'TfoS' in this process. TfoS is a transmembrane protein that contains a large periplasmic domain and a cytoplasmic AraC-type DNA-binding domain, but lacks TCS signature domains. Inactivation of tfoS abolished natural competence as well as transcription of the tfoR gene encoding a chitin-induced small RNA essential for competence gene expression. A TfoS fragment containing the DNA-binding domain specifically bound to and activated transcription from the tfoR promoter. Intracellular TfoS levels were unaffected by disruption of chiS and coexpression of TfoS and ChiS in Escherichia coli recovered transcription of the chromosomally integrated tfoR::lacZ gene, suggesting that TfoS is post-translationally modulated by ChiS during transcriptional activation; however, this regulation persisted when the canonical phosphorelay residues of ChiS were mutated. The results presented here suggest that ChiS operates a chitin-induced non-canonical signal transduction cascade through TfoS, leading to transcriptional activation of tfoR. © 2013 John Wiley & Sons Ltd.
Integrable topological billiards and equivalent dynamical systems
Vedyushkina, V. V.; Fomenko, A. T.
2017-08-01
We consider several topological integrable billiards and prove that they are Liouville equivalent to many systems of rigid body dynamics. The proof uses the Fomenko-Zieschang theory of invariants of integrable systems. We study billiards bounded by arcs of confocal quadrics and their generalizations, generalized billiards, where the motion occurs on a locally planar surface obtained by gluing several planar domains isometrically along their boundaries, which are arcs of confocal quadrics. We describe two new classes of integrable billiards bounded by arcs of confocal quadrics, namely, non-compact billiards and generalized billiards obtained by gluing planar billiards along non-convex parts of their boundaries. We completely classify non-compact billiards bounded by arcs of confocal quadrics and study their topology using the Fomenko invariants that describe the bifurcations of singular leaves of the additional integral. We study the topology of isoenergy surfaces for some non-convex generalized billiards. It turns out that they possess exotic Liouville foliations: the integral trajectories of the billiard that lie on some singular leaves admit no continuous extension. Such billiards appear to be leafwise equivalent to billiards bounded by arcs of confocal quadrics in the Minkowski metric.
Periodic orbits and non-integrability of Henon-Heiles systems
Llibre, Jaume; Jimenez-Lara, Lidia
2011-01-01
We apply the averaging theory of second order to study the periodic orbits for a generalized Henon-Heiles system with two parameters, which contains the classical Henon-Heiles system. Two main results are shown. The first result provides sufficient conditions on the two parameters of these generalized systems, which guarantee that at any positive energy level, the Hamiltonian system has periodic orbits. These periodic orbits form in the whole phase space a continuous family of periodic orbits parameterized by the energy. The second result shows that for the non-integrable Henon-Heiles systems in the sense of Liouville-Arnol'd, which have the periodic orbits analytically found with averaging theory, cannot exist any second first integral of class C 1 . In particular, for any second first integral of class C 1 , we prove that the classical Henon-Heiles system and many generalizations of it are not integrable in the sense of Liouville-Arnol'd. Moreover, the tools we use for studying the periodic orbits and the non-Liouville-Arnol'd integrability can be applied to Hamiltonian systems with an arbitrary number of degrees of freedom.
Yu Fajun; Zhang Hongqing
2008-01-01
This paper presents a set of multicomponent matrix Lie algebra, which is used to construct a new loop algebra Ã M . By using the Tu scheme, a Liouville integrable multicomponent equation hierarchy is generated, which possesses the Hamiltonian structure. As its reduction cases, the multicomponent (2+1)-dimensional Glachette–Johnson (GJ) hierarchy is given. Finally, the super-integrable coupling system of multicomponent (2+1)-dimensional GJ hierarchy is established through enlarging the spectral problem
Olwig, Karen Fog
2011-01-01
, while the countries have adopted disparate policies and ideologies, differences in the actual treatment and attitudes towards immigrants and refugees in everyday life are less clear, due to parallel integration programmes based on strong similarities in the welfare systems and in cultural notions...... of equality in the three societies. Finally, it shows that family relations play a central role in immigrants’ and refugees’ establishment of a new life in the receiving societies, even though the welfare society takes on many of the social and economic functions of the family....
A Family of Integrable Rational Semi-Discrete Systems and Its Reduction
Xu Xixiang
2010-01-01
Within framework of zero curvature representation theory, a family of integrahle rational semi-discrete systems is derived from a matrix spectral problem. The Hamiltonian forms of obtained semi-discrete systems are constructed by means of the discrete trace identity. The Liouville integrability for the obtained family is demonstrated. In the end, a reduced family of obtained semi-discrete systems and its Hamiltonian form are worked out. (general)
Classical and quantum integrability of 2D dilaton gravities in Euclidean space
Bergamin, L; Grumiller, D; Kummer, W; Vassilevich, D V
2005-01-01
Euclidean dilaton gravity in two dimensions is studied exploiting its representation as a complexified first order gravity model. All local classical solutions are obtained. A global discussion reveals that for a given model only a restricted class of topologies is consistent with the metric and the dilaton. A particular case of string motivated Liouville gravity is studied in detail. Path integral quantization in generic Euclidean dilaton gravity is performed non-perturbatively by analogy to the Minkowskian case
Exactly integrable two-dimensional dynamical systems related with supersymmetric algebras
Leznov, A.N.
1983-01-01
A wide class of exactly integrable dynamical systems in two-dimensional space related with superalgebras, which generalize supersymmetric Liouville equation, is constructed. The equations can be interpretated as nonlinearly interacting Bose and Fermi fields belonging within classical limit to even and odd parts of the Grassman space. Explicit expressions for the solutions of the constructed systems are obtained on the basis of standard perturbation theory
Madrigal-Martínez, Antonio; Fernández-Martínez, Ana B; Lucio Cazaña, Francisco J
2018-04-01
Prostaglandin E 2 (PGE 2 ) increases cell proliferation and stimulates migratory and angiogenic abilities in prostate cancer cells. However, the effects of PGE 2 on non-transformed prostate epithelial cells are unknown, despite the fact that PGE 2 overproduction has been found in benign hyperplastic prostates. In the present work we studied the effects of PGE 2 in immortalized, non-malignant prostate epithelial RWPE-1 cells and found that PGE 2 increased cell proliferation, cell migration, and production of vascular endothelial growth factor-A, and activated in vitro angiogenesis. These actions involved a non-canonic intracrine mechanism in which the actual effector was intracellular PGE 2 (iPGE 2 ) instead of extracellular PGE 2 : inhibition of the prostaglandin uptake transporter (PGT) or antagonism of EP receptors prevented the effects of PGE 2 , which indicated that PGE 2 activity depended on its carrier-mediated translocation from the outside to the inside of cells and that EP receptors located intracellularly (iEP) mediated the effects of PGE 2 . iPGE 2 acted through transactivation of epidermal growth factor-receptor (EGFR) by iEP, leading to increased expression and activity of hypoxia-inducible factor-1α (HIF-1α). Interestingly, iPGE 2 also mediates the effects of PGE 2 on prostate cancer PC3 cells through the axis iPGE 2 -iEP receptors-EGFR-HIF-1α. Thus, this axis might be responsible for the growth-stimulating effects of PGE 2 on prostate epithelial cells, thereby contributing to prostate proliferative diseases associated with chronic inflammation. Since this PGT-dependent non-canonic intracrine mechanism of PGE 2 action operates in both benign and malignant prostate epithelial cells, PGT inhibitors should be tested as a novel therapeutic modality to treat prostate proliferative disease. © 2017 Wiley Periodicals, Inc.
Integrability of dynamical systems algebra and analysis
Zhang, Xiang
2017-01-01
This is the first book to systematically state the fundamental theory of integrability and its development of ordinary differential equations with emphasis on the Darboux theory of integrability and local integrability together with their applications. It summarizes the classical results of Darboux integrability and its modern development together with their related Darboux polynomials and their applications in the reduction of Liouville and elementary integrabilty and in the center—focus problem, the weakened Hilbert 16th problem on algebraic limit cycles and the global dynamical analysis of some realistic models in fields such as physics, mechanics and biology. Although it can be used as a textbook for graduate students in dynamical systems, it is intended as supplementary reading for graduate students from mathematics, physics, mechanics and engineering in courses related to the qualitative theory, bifurcation theory and the theory of integrability of dynamical systems.
Variational integrators for reduced magnetohydrodynamics
Kraus, Michael, E-mail: michael.kraus@ipp.mpg.de [Max-Planck-Institut für Plasmaphysik, Boltzmannstraße 2, 85748 Garching (Germany); Technische Universität München, Zentrum Mathematik, Boltzmannstraße 3, 85748 Garching (Germany); Tassi, Emanuele, E-mail: tassi@cpt.univ-mrs.fr [Aix-Marseille Université, Université de Toulon, CNRS, CPT, UMR 7332, 163 avenue de Luminy, case 907, 13288 cedex 9 Marseille (France); Grasso, Daniela, E-mail: daniela.grasso@infm.polito.it [ISC-CNR and Politecnico di Torino, Dipartimento Energia, C.so Duca degli Abruzzi 24, 10129 Torino (Italy)
2016-09-15
Reduced magnetohydrodynamics is a simplified set of magnetohydrodynamics equations with applications to both fusion and astrophysical plasmas, possessing a noncanonical Hamiltonian structure and consequently a number of conserved functionals. We propose a new discretisation strategy for these equations based on a discrete variational principle applied to a formal Lagrangian. The resulting integrator preserves important quantities like the total energy, magnetic helicity and cross helicity exactly (up to machine precision). As the integrator is free of numerical resistivity, spurious reconnection along current sheets is absent in the ideal case. If effects of electron inertia are added, reconnection of magnetic field lines is allowed, although the resulting model still possesses a noncanonical Hamiltonian structure. After reviewing the conservation laws of the model equations, the adopted variational principle with the related conservation laws is described both at the continuous and discrete level. We verify the favourable properties of the variational integrator in particular with respect to the preservation of the invariants of the models under consideration and compare with results from the literature and those of a pseudo-spectral code.
Integrability of Hamiltonian systems with homogeneous potentials of degree zero
Casale, Guy, E-mail: guy.casale@univ-rennes1.f [IRMAR UMR 6625, Universite de Rennes 1, Campus de Beaulieu, 35042 Rennes Cedex (France); Duval, Guillaume, E-mail: dduuvvaall@wanadoo.f [1 Chemin du Chateau, 76 430 Les Trois Pierres (France); Maciejewski, Andrzej J., E-mail: maciejka@astro.ia.uz.zgora.p [Institute of Astronomy, University of Zielona Gora, Licealna 9, PL-65-417 Zielona Gora (Poland); Przybylska, Maria, E-mail: Maria.Przybylska@astri.uni.torun.p [Torun Centre for Astronomy, N. Copernicus University, Gagarina 11, PL-87-100 Torun (Poland)
2010-01-04
We derive necessary conditions for integrability in the Liouville sense of classical Hamiltonian systems with homogeneous potentials of degree zero. We obtain these conditions through an analysis of the differential Galois group of variational equations along a particular solution generated by a non-zero solution d element of C{sup n} of nonlinear equation gradV(d)=d. We prove that when the system is integrable the Hessian matrix V{sup ''}(d) has only integer eigenvalues and is diagonalizable.
Ana B Sanz
2010-01-01
Full Text Available TWEAK is a member of the TNF superfamily of cytokines that contribute to kidney tubulointerstitial injury. It has previously been reported that TWEAK induces transient nuclear translocation of RelA and expression of RelA-dependent cytokines in renal tubular cells. Additionally, TWEAK induced long-lasting NFkappaB activation suggestive of engagement of the non-canonical NFkappaB pathway. We now explore TWEAK-induced activation of NFkappaB2 and RelB, as well as expression of CCL21, a T-cell chemotactic factor, in cultured murine tubular epithelial cells and in healthy kidneys in vivo. In cultured tubular cells, TWEAK and TNFalpha activated different DNA-binding NFkappaB complexes. TWEAK-induced sustained NFkappaB activation was associated with NFkappaB2 p100 processing to p52 via proteasome and nuclear translocation and DNA-binding of p52 and RelB. TWEAK, but not TNFalpha used as control, induced a delayed increase in CCL21a mRNA (3.5+/-1.22-fold over control and CCL21 protein (2.5+/-0.8-fold over control, which was prevented by inhibition of the proteasome, or siRNA targeting of NIK or RelB, but not by RelA inhibition with parthenolide. A second NFkappaB2-dependent chemokine, CCL19, was upregulates by TWEAK, but not by TNFalpha. However, both cytokines promoted chemokine RANTES expression (3-fold mRNA at 24 h. In vivo, TWEAK induced nuclear NFkappaB2 and RelB translocation and CCL21a mRNA (1.5+/-0.3-fold over control and CCL21 protein (1.6+/-0.5-fold over control expression in normal kidney. Increased tubular nuclear RelB and tubular CCL21 expression in acute kidney injury were decreased by neutralization (2+/-0.9 vs 1.3+/-0.6-fold over healthy control or deficiency of TWEAK (2+/-0.9 vs 0.8+/-0.6-fold over healthy control. Moreover, anti-TWEAK treatment prevented the recruitment of T cells to the kidney in this model (4.1+/-1.4 vs 1.8+/-1-fold over healthy control. Our results thus identify TWEAK as a regulator of non-canonical NFkappa
Structure-based non-canonical amino acid design to covalently crosslink an antibody–antigen complex
Xu, Jianqing; Tack, Drew; Hughes, Randall A.; Ellington, Andrew D.; Gray, Jeffrey J.
2014-01-01
Engineering antibodies to utilize non-canonical amino acids (NCAA) should greatly expand the utility of an already important biological reagent. In particular, introducing crosslinking reagents into antibody complementarity determining regions (CDRs) should provide a means to covalently crosslink residues at the antibody–antigen interface. Unfortunately, finding the optimum position for crosslinking two proteins is often a matter of iterative guessing, even when the interface is known in atomic detail. Computer-aided antibody design can potentially greatly restrict the number of variants that must be explored in order to identify successful crosslinking sites. We have therefore used Rosetta to guide the introduction of an oxidizable crosslinking NCAA, l-3,4-dihydroxyphenylalanine (l-DOPA), into the CDRs of the anti-protective antigen scFv antibody M18, and have measured crosslinking to its cognate antigen, domain 4 of the anthrax protective antigen. Computed crosslinking distance, solvent accessibility, and interface energetics were three factors considered that could impact the efficiency of l-DOPA-mediated crosslinking. In the end, 10 variants were synthesized, and crosslinking efficiencies were generally 10% or higher, with the best variant crosslinking to 52% of the available antigen. The results suggest that computational analysis can be used in a pipeline for engineering crosslinking antibodies. The rules learned from l-DOPA crosslinking of antibodies may also be generalizable to the formation of other crosslinked interfaces and complexes. PMID:23680795
Majoros, Andrea; Platanitis, Ekaterini; Kernbauer-Hölzl, Elisabeth; Rosebrock, Felix; Müller, Mathias; Decker, Thomas
2017-01-01
Janus kinase (JAK)-signal transducer and activator of transcription (STAT) signal transduction mediates cytokine responses. Canonical signaling is based on STAT tyrosine phosphorylation by activated JAKs. Downstream of interferon (IFN) receptors, activated JAKs cause the formation of the transcription factors IFN-stimulated gene factor 3 (ISGF3), a heterotrimer of STAT1, STAT2 and interferon regulatory factor 9 (IRF9) subunits, and gamma interferon-activated factor (GAF), a STAT1 homodimer. In recent years, several deviations from this paradigm were reported. These include kinase-independent JAK functions as well as extra- and intranuclear activities of U-STATs without phosphotyrosines. Additionally, transcriptional control by STAT complexes resembling neither GAF nor ISGF3 contributes to transcriptome changes in IFN-treated cells. Our review summarizes the contribution of non-canonical JAK-STAT signaling to the innate antimicrobial immunity imparted by IFN. Moreover, we touch upon functions of IFN pathway proteins beyond the IFN response. These include metabolic functions of IRF9 as well as the regulation of natural killer cell activity by kinase-dead TYK2 and different phosphorylation isoforms of STAT1.
Majoros, Andrea; Platanitis, Ekaterini; Kernbauer-Hölzl, Elisabeth; Rosebrock, Felix; Müller, Mathias; Decker, Thomas
2017-01-01
Janus kinase (JAK)–signal transducer and activator of transcription (STAT) signal transduction mediates cytokine responses. Canonical signaling is based on STAT tyrosine phosphorylation by activated JAKs. Downstream of interferon (IFN) receptors, activated JAKs cause the formation of the transcription factors IFN-stimulated gene factor 3 (ISGF3), a heterotrimer of STAT1, STAT2 and interferon regulatory factor 9 (IRF9) subunits, and gamma interferon-activated factor (GAF), a STAT1 homodimer. In recent years, several deviations from this paradigm were reported. These include kinase-independent JAK functions as well as extra- and intranuclear activities of U-STATs without phosphotyrosines. Additionally, transcriptional control by STAT complexes resembling neither GAF nor ISGF3 contributes to transcriptome changes in IFN-treated cells. Our review summarizes the contribution of non-canonical JAK–STAT signaling to the innate antimicrobial immunity imparted by IFN. Moreover, we touch upon functions of IFN pathway proteins beyond the IFN response. These include metabolic functions of IRF9 as well as the regulation of natural killer cell activity by kinase-dead TYK2 and different phosphorylation isoforms of STAT1. PMID:28184222
Pokhrel, Nilisha; Origanti, Sofia; Davenport, Eric Parker; Gandhi, Disha; Kaniecki, Kyle; Mehl, Ryan A; Greene, Eric C; Dockendorff, Chris; Antony, Edwin
2017-09-19
An essential coordinator of all DNA metabolic processes is Replication Protein A (RPA). RPA orchestrates these processes by binding to single-stranded DNA (ssDNA) and interacting with several other DNA binding proteins. Determining the real-time kinetics of single players such as RPA in the presence of multiple DNA processors to better understand the associated mechanistic events is technically challenging. To overcome this hurdle, we utilized non-canonical amino acids and bio-orthogonal chemistry to site-specifically incorporate a chemical fluorophore onto a single subunit of heterotrimeric RPA. Upon binding to ssDNA, this fluorescent RPA (RPAf) generates a quantifiable change in fluorescence, thus serving as a reporter of its dynamics on DNA in the presence of multiple other DNA binding proteins. Using RPAf, we describe the kinetics of facilitated self-exchange and exchange by Rad51 and mediator proteins during various stages in homologous recombination. RPAf is widely applicable to investigate its mechanism of action in processes such as DNA replication, repair and telomere maintenance. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.
Zhang, J; Wang, J; Lee, Y-M; Lim, T-K; Lin, Q; Shen, H-M
2017-01-01
Autophagy is an intracellular degradation process activated by stress factors such as nutrient starvation to maintain cellular homeostasis. There is emerging evidence demonstrating that de novo protein synthesis is involved in the autophagic process. However, up-to-date characterizing of these de novo proteins is technically difficult. In this chapter, we describe a novel method to identify newly synthesized proteins during starvation-mediated autophagy by bioorthogonal noncanonical amino acid tagging (BONCAT), in conjunction with isobaric tagging for relative and absolute quantification (iTRAQ)-based quantitative proteomics. l-azidohomoalanine (AHA) is an analog of methionine, and it can be readily incorporated into the newly synthesized proteins. The AHA-containing proteins can be enriched with avidin beads after a "click" reaction between alkyne-bearing biotin and the azide moiety of AHA. The enriched proteins are then subjected to iTRAQ™ labeling for protein identification and quantification using liquid chromatography-tandem mass spectrometry (LC-MS/MS). By using this technique, we have successfully profiled more than 700 proteins that are synthesized during starvation-induced autophagy. We believe that this approach is effective in identification of newly synthesized proteins in the process of autophagy and provides useful insights to the molecular mechanisms and biological functions of autophagy. © 2017 Elsevier Inc. All rights reserved.
Samarzija, Ivana; Sini, Patrizia; Schlange, Thomas; MacDonald, Gwen; Hynes, Nancy E.
2009-01-01
Untangling the signaling pathways involved in endothelial cell biology is of central interest for the development of antiangiogenesis based therapies. Here we report that Wnt3a induces the proliferation and migration of HUVECs, but does not affect their survival. Wnt3a-induced proliferation was VEGFR signaling independent, but reduced upon CamKII inhibition. In a search for the downstream mediators of Wnt3a's effects on HUVEC biology, we found that Wnt3a treatment leads to phosphorylation of DVL3 and stabilization of β-catenin. Moreover, under the same conditions we observed an upregulation in c-MYC, TIE-2 and GJA1 mRNA transcripts. Although treatment of HUVECs with Wnt5a induced DVL3 phosphorylation, we did not observe any of the other effects seen upon Wnt3a stimulation. Taken together, our data indicate that Wnt3a induces canonical and non-canonical Wnt signaling in HUVECs, and stimulates their proliferation and migration.
Scarlatti, F; Maffei, R; Beau, I; Codogno, P; Ghidoni, R
2008-08-01
Resveratrol, a polyphenol found in grapes and other fruit and vegetables, is a powerful chemopreventive and chemotherapeutic molecule potentially of interest for the treatment of breast cancer. The human breast cancer cell line MCF-7, which is devoid of caspase-3 activity, is refractory to apoptotic cell death after incubation with resveratrol. Here we show that resveratrol arrests cell proliferation, triggers death and decreases the number of colonies of cells that are sensitive to caspase-3-dependent apoptosis (MCF-7 casp-3) and also those that are unresponsive to it (MCF-7vc). We demonstrate that resveratrol (i) acts via multiple pathways to trigger cell death, (ii) induces caspase-dependent and caspase-independent cell death in MCF-7 casp-3 cells, (iii) induces only caspase-independent cell death in MCF-7vc cells and (iv) stimulates macroautophagy. Using BECN1 and hVPS34 (human vacuolar protein sorting 34) small interfering RNAs, we demonstrate that resveratrol activates Beclin 1-independent autophagy in both cell lines, whereas cell death via this uncommon form of autophagy occurs only in MCF-7vc cells. We also show that this variant form of autophagic cell death is blocked by the expression of caspase-3, but not by its enzymatic activity. In conclusion, this study reveals that non-canonical autophagy induced by resveratrol can act as a caspase-independent cell death mechanism in breast cancer cells.
Thomas, Emily E; Pandey, Naresh; Knudsen, Sarah; Ball, Zachary T; Silberg, Jonathan J
2017-08-18
Transcriptional control can be used to program cells to label proteins with noncanonical amino acids by regulating the expression of orthogonal aminoacyl tRNA synthetases (aaRSs). However, we cannot yet program cells to control labeling in response to aaRS and ligand binding. To identify aaRSs whose activities can be regulated by interactions with ligands, we used a combinatorial approach to discover fragmented variants of Escherichia coli methionyl tRNA synthetase (MetRS) that require fusion to associating proteins for maximal activity. We found that these split proteins could be leveraged to create ligand-dependent MetRS using two approaches. When a pair of MetRS fragments was fused to FKBP12 and the FKBP-rapamycin binding domain (FRB) of mTOR and mutations were introduced that direct substrate specificity toward azidonorleucine (Anl), Anl metabolic labeling was significantly enhanced in growth medium containing rapamycin, which stabilizes the FKBP12-FRB complex. In addition, fusion of MetRS fragments to the termini of the ligand-binding domain of the estrogen receptor yielded proteins whose Anl metabolic labeling was significantly enhanced when 4-hydroxytamoxifen (4-HT) was added to the growth medium. These findings suggest that split MetRS can be fused to a range of ligand-binding proteins to create aaRSs whose metabolic labeling activities depend upon post-translational interactions with ligands.
From Flies to Mice: The Emerging Role of Non-Canonical PRC1 Members in Mammalian Development
Izabella Bajusz
2018-02-01
Full Text Available Originally two types of Polycomb Repressive Complexes (PRCs were described, canonical PRC1 (cPRC1 and PRC2. Recently, a versatile set of complexes were identified and brought up several dilemmas in PRC mediated repression. These new class of complexes were named as non-canonical PRC1s (ncPRC1s. Both cPRC1s and ncPRC1s contain Ring finger protein (RING1, RNF2 and Polycomb group ring finger catalytic (PCGF core, but in ncPRCs, RING and YY1 binding protein (RYBP, or YY1 associated factor 2 (YAF2, replaces the Chromobox (CBX and Polyhomeotic (PHC subunits found in cPRC1s. Additionally, ncPRC1 subunits can associate with versatile accessory proteins, which determine their functional specificity. Homozygous null mutations of the ncPRC members in mice are often lethal or cause infertility, which underlines their essential functions in mammalian development. In this review, we summarize the mouse knockout phenotypes of subunits of the six major ncPRCs. We highlight several aspects of their discovery from fly to mice and emerging role in target recognition, embryogenesis and cell-fate decision making. We gathered data from stem cell mediated in vitro differentiation assays and genetically engineered mouse models. Accumulating evidence suggests that ncPRC1s play profound role in mammalian embryogenesis by regulating gene expression during lineage specification of pluripotent stem cells.
Sugimoto, Naoki
2014-01-01
How does molecular crowding affect the stability of nucleic acid structures inside cells? Water is the major solvent component in living cells, and the properties of water in the highly crowded media inside cells differ from that in buffered solution. As it is difficult to measure the thermodynamic behavior of nucleic acids in cells directly and quantitatively, we recently developed a cell-mimicking system using cosolutes as crowding reagents. The influences of molecular crowding on the structures and thermodynamics of various nucleic acid sequences have been reported. In this chapter, we discuss how the structures and thermodynamic properties of nucleic acids differ under various conditions such as highly crowded environments, compartment environments, and in the presence of ionic liquids, and the major determinants of the crowding effects on nucleic acids are discussed. The effects of molecular crowding on the activities of ribozymes and riboswitches on noncanonical structures of DNA- and RNA-like quadruplexes that play important roles in transcription and translation are also described. © 2014 Elsevier Inc. All rights reserved.
Certain fractional integral formulas involving the product of generalized Bessel functions.
Baleanu, D; Agarwal, P; Purohit, S D
2013-01-01
We apply generalized operators of fractional integration involving Appell's function F 3(·) due to Marichev-Saigo-Maeda, to the product of the generalized Bessel function of the first kind due to Baricz. The results are expressed in terms of the multivariable generalized Lauricella functions. Corresponding assertions in terms of Saigo, Erdélyi-Kober, Riemann-Liouville, and Weyl type of fractional integrals are also presented. Some interesting special cases of our two main results are presented. We also point out that the results presented here, being of general character, are easily reducible to yield many diverse new and known integral formulas involving simpler functions.
Certain Fractional Integral Formulas Involving the Product of Generalized Bessel Functions
Baleanu, D.; Agarwal, P.; Purohit, S. D.
2013-01-01
We apply generalized operators of fractional integration involving Appell's function F 3(·) due to Marichev-Saigo-Maeda, to the product of the generalized Bessel function of the first kind due to Baricz. The results are expressed in terms of the multivariable generalized Lauricella functions. Corresponding assertions in terms of Saigo, Erdélyi-Kober, Riemann-Liouville, and Weyl type of fractional integrals are also presented. Some interesting special cases of our two main results are presented. We also point out that the results presented here, being of general character, are easily reducible to yield many diverse new and known integral formulas involving simpler functions. PMID:24379745
Ezz-Eldien, S. S.; Doha, E. H.; Bhrawy, A. H.; El-Kalaawy, A. A.; Machado, J. A. T.
2018-04-01
In this paper, we propose a new accurate and robust numerical technique to approximate the solutions of fractional variational problems (FVPs) depending on indefinite integrals with a type of fixed Riemann-Liouville fractional integral. The proposed technique is based on the shifted Chebyshev polynomials as basis functions for the fractional integral operational matrix (FIOM). Together with the Lagrange multiplier method, these problems are then reduced to a system of algebraic equations, which greatly simplifies the solution process. Numerical examples are carried out to confirm the accuracy, efficiency and applicability of the proposed algorithm
Functional integration over geometries
Mottola, E.
1995-01-01
The geometric construction of the functional integral over coset spaces M/G is reviewed. The inner product on the cotangent space of infinitesimal deformations of M defines an invariant distance and volume form, or functional integration measure on the full configuration space. Then, by a simple change of coordinates parameterizing the gauge fiber G, the functional measure on the coset space M/G is deduced. This change of integration variables leads to a Jacobian which is entirely equivalent to the Faddeev--Popov determinant of the more traditional gauge fixed approach in non-abelian gauge theory. If the general construction is applied to the case where G is the group of coordinate reparameterizations of spacetime, the continuum functional integral over geometries, i.e. metrics modulo coordinate reparameterizations may be defined. The invariant functional integration measure is used to derive the trace anomaly and effective action for the conformal part of the metric in two and four dimensional spacetime. In two dimensions this approach generates the Polyakov--Liouville action of closed bosonic non-critical string theory. In four dimensions the corresponding effective action leads to novel conclusions on the importance of quantum effects in gravity in the far infrared, and in particular, a dramatic modification of the classical Einstein theory at cosmological distance scales, signaled first by the quantum instability of classical de Sitter spacetime. Finite volume scaling relations for the functional integral of quantum gravity in two and four dimensions are derived, and comparison with the discretized dynamical triangulation approach to the integration over geometries are discussed. Outstanding unsolved problems in both the continuum definition and the simplicial approach to the functional integral over geometries are highlighted
(Super)integrability from coalgebra symmetry: Formalism and applications
Ballesteros, A; Blasco, A; Herranz, F J; Musso, F [Departamento de Fisica, Universidad de Burgos, E-09001 Burgos (Spain); Ragnisco, O, E-mail: angelb@ubu.e, E-mail: ablasco@ubu.e, E-mail: fjherranz@ubu.e, E-mail: fmusso@ubu.e, E-mail: ragnisco@fis.uniroma3.i [Dipartimento di Fisica, Universita di Roma Tre and Instituto Nazionale di Fisica Nucleare sezione di Roma Tre, Via Vasca Navale 84, I-00146 Roma (Italy)
2009-06-01
The coalgebra approach to the construction of classical integrable systems from Poisson coalgebras is reviewed, and the essential role played by symplectic realizations in this framework is emphasized. Many examples of Hamiltonians with either undeformed or q-deformed coalgebra symmetry are given, and their Liouville superintegrability is discussed. Among them, (quasi-maximally) superintegrable systems on N-dimensional curved spaces of nonconstant curvature are analysed in detail. Further generalizations of the coalgebra approach that make use of comodule and loop algebras are presented. The generalization of such a coalgebra symmetry framework to quantum mechanical systems is straightforward.
Gutensohn, Michael; Nguyen, Thuong T H; McMahon, Richard D; Kaplan, Ian; Pichersky, Eran; Dudareva, Natalia
2014-07-01
Recently it was shown that monoterpenes in tomato trichomes (Solanum lycopersicum) are synthesized by phellandrene synthase 1 (PHS1) from the non-canonical substrate neryl diphosphate (NPP), the cis-isomer of geranyl diphosphate (GPP). As PHS1 accepts both NPP and GPP substrates forming different monoterpenes, it was overexpressed in tomato fruits to test if NPP is also available in a tissue highly active in carotenoid production. However, transgenic fruits overexpressing PHS1 produced only small amounts of GPP-derived PHS1 monoterpene products, indicating the absence of endogenous NPP. Therefore, NPP formation was achieved by diverting the metabolic flux from carotenoids via expression of tomato neryl diphosphate synthase 1 (NDPS1). NDPS1 transgenic fruits produced NPP-derived monoterpenes, including nerol, neral and geranial, while displaying reduced lycopene content. NDPS1 co-expression with PHS1 resulted in a monoterpene blend, including β-phellandrene, similar to that produced from NPP by PHS1 in vitro and in trichomes. Unexpectedly, PHS1×NDPS1 fruits showed recovery of lycopene levels compared to NDPS1 fruits, suggesting that redirection of metabolic flux is only partially responsible for the reduction in carotenoids. In vitro assays demonstrated that NPP serves as an inhibitor of geranylgeranyl diphosphate synthase, thus its consumption by PHS1 leads to recovery of lycopene levels. Monoterpenes produced in PHS1×NDPS1 fruits contributed to direct plant defense negatively affecting feeding behavior of the herbivore Helicoverpa zea and displaying antifungal activity against Botrytis cinerea. These results show that NPP-derived terpenoids can be produced in plant tissues; however, NPP has to be consumed to avoid negative impacts on plant metabolism. Copyright © 2014 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.
The poly(rC)-binding protein αCP2 is a noncanonical factor in X. laevis cytoplasmic polyadenylation
Vishnu, Melanie R.; Sumaroka, Marina; Klein, Peter S.; Liebhaber, Stephen A.
2011-01-01
Post-transcriptional control of mRNA stability and translation is central to multiple developmental pathways. This control can be linked to cytoplasmic polyadenylation in certain settings. In maturing Xenopus oocytes, specific mRNAs are targeted for polyadenylation via recruitment of the Cytoplasmic Polyadenylation Element (CPE) binding protein (CPEB) to CPE(s) within the 3′ UTR. Cytoplasmic polyadenylation is also critical to early embryonic events, although corresponding determinants are less defined. Here, we demonstrate that the Xenopus ortholog of the poly(rC) binding protein αCP2 can recruit cytoplasmic poly(A) polymerase activity to mRNAs in Xenopus post-fertilization embryos, and that this recruitment relies on cis sequences recognized by αCP2. We find that the hα-globin 3′ UTR, a validated mammalian αCP2 target, constitutes an effective target for cytoplasmic polyadenylation in Xenopus embryos, but not during Xenopus oocyte maturation. We further demonstrate that the cytoplasmic polyadenylation activity is dependent on the action of the C-rich αCP-binding site in conjunction with the adjacent AAUAAA. Consistent with its ability to target mRNA for poly(A) addition, we find that XαCP2 associates with core components of the Xenopus cytoplasmic polyadenylation complex, including the cytoplasmic poly(A) polymerase XGLD2. Furthermore, we observe that the C-rich αCP-binding site can robustly enhance the activity of a weak canonical oocyte maturation CPE in early embryos, possibly via a direct interaction between XαCP2 and CPEB1. These studies establish XαCP2 as a novel cytoplasmic polyadenylation trans factor, indicate that C-rich sequences can function as noncanonical cytoplasmic polyadenylation elements, and expand our understanding of the complexities underlying cytoplasmic polyadenylation in specific developmental settings. PMID:21444632
Tseng, Jen-Chih; Lin, Ching-Yu; Su, Liang-Chen; Fu, Hsiao-Hui; Yang, Shiaw-Der; Chuu, Chih-Pin
2016-06-21
Prostate cancer (PCa) was the fifth most common cancer overall in the world. More than 80% of patients died from PCa developed bone metastases. Caffeic acid phenethyl ester (CAPE) is a main bioactive component of honeybee hive propolis. Transwell and wound healing assays demonstrated that CAPE treatment suppressed the migration and invasion of PC-3 and DU-145 PCa cells. Gelatin zymography and Western blotting indicated that CAPE treatment reduced the abundance and activity of MMP-9 and MMP-2. Analysis using Micro-Western Array (MWA), a high-throughput antibody-based proteomics platform with 264 antibodies detecting signaling proteins involved in important pathways indicated that CAPE treatment induced receptor tyrosine kinase-like orphan receptor 2 (ROR2) in non-canonical Wnt signaling pathway but suppressed abundance of β-catenin, NF-κB activity, PI3K-Akt signaling, and epithelial-mesenchymal transition (EMT). Overexpression or knockdown of ROR2 suppressed or enhanced cell migration of PC-3 cells, respectively. TCF-LEF promoter binding assay revealed that CAPE treatment reduced canonical Wnt signaling. Intraperitoneal injection of CAPE reduced the metastasis of PC-3 xenografts in tail vein injection nude mice model. Immunohistochemical staining demonstrated that CAPE treatment increased abundance of ROR2 and Wnt5a but decreased protein expression of Ki67, Frizzle 4, NF-κB p65, MMP-9, Snail, β-catenin, and phosphorylation of IκBα. Clinical evidences suggested that genes affected by CAPE treatment (CTNNB1, RELA, FZD5, DVL3, MAPK9, SNAl1, ROR2, SMAD4, NFKBIA, DUSP6, and PLCB3) correlate with the aggressiveness of PCa. Our study suggested that CAPE may be a potential therapeutic agent for patients with advanced PCa.
Calo, Silvia; Nicolás, Francisco E; Lee, Soo Chan; Vila, Ana; Cervantes, Maria; Torres-Martinez, Santiago; Ruiz-Vazquez, Rosa M; Cardenas, Maria E; Heitman, Joseph
2017-03-01
Mucorales are a group of basal fungi that includes the casual agents of the human emerging disease mucormycosis. Recent studies revealed that these pathogens activate an RNAi-based pathway to rapidly generate drug-resistant epimutant strains when exposed to stressful compounds such as the antifungal drug FK506. To elucidate the molecular mechanism of this epimutation pathway, we performed a genetic analysis in Mucor circinelloides that revealed an inhibitory role for the non-canonical RdRP-dependent Dicer-independent silencing pathway, which is an RNAi-based mechanism involved in mRNA degradation that was recently identified. Thus, mutations that specifically block the mRNA degradation pathway, such as those in the genes r3b2 and rdrp3, enhance the production of drug resistant epimutants, similar to the phenotype previously described for mutation of the gene rdrp1. Our genetic analysis also revealed two new specific components of the epimutation pathway related to the quelling induced protein (qip) and a Sad-3-like helicase (rnhA), as mutations in these genes prevented formation of drug-resistant epimutants. Remarkably, drug-resistant epimutant production was notably increased in M. circinelloides f. circinelloides isolates from humans or other animal hosts. The host-pathogen interaction could be a stressful environment in which the phenotypic plasticity provided by the epimutant pathway might provide an advantage for these strains. These results evoke a model whereby balanced regulation of two different RNAi pathways is determined by the activation of the RNAi-dependent epimutant pathway under stress conditions, or its repression when the regular maintenance of the mRNA degradation pathway operates under non-stress conditions.
Ogami, Koichi; Cho, Rihe [Department of Biological Chemistry, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya 467-8603 (Japan); Hoshino, Shin-ichi, E-mail: hoshino@phar.nagoya-cu.ac.jp [Department of Biological Chemistry, Graduate School of Pharmaceutical Sciences, Nagoya City University, Nagoya 467-8603 (Japan)
2013-03-01
Highlights: ► So far, only an enzymatically inactive isoform of PAPD7 was reported. ► The novel isoform: PAPD7 l shows robust nucleotidyl transferase activity. ► The newly identified amino terminal region is required for the activity. ► PAPD7 l localizes to the nucleoplasm. ► The N terminal region identified is also required for the nuclear localization. - Abstract: Non-canonical poly(A) polymerases (ncPAPs) catalyze the addition of poly(A) tail to the 3′ end of RNA to play pivotal roles in the regulation of gene expression and also in quality control. Here we identified a novel isoform of the 7th member of ncPAPs: PAPD7 (PAPD7 l), which contains 230 extra amino acids at the amino terminus of the previously identified PAPD7 (PAPD7 s). In sharp contrast to the inactive PAPD7 s, PAPD7 l showed robust nucleotidyl transferase activity when tethered to an RNA. A region required for the activity was localized to 187–219 aa, and this region was also required for the nuclear retention of PAPD7 l. Western blot analysis revealed that 94 kDa band (corresponding to PAPD7 l) but not 62 kDa band (corresponding to PAPD7 s) detected by PAPD7 antibody was specifically depleted by treatment with PAPD7 siRNA in both HeLa and U2OS cells. These results suggest that PAPD7 l is the major and active isoform of PAPD7 expressed in cells.
A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3).
Fuller, Stephen J; McGuffin, Liam J; Marshall, Andrew K; Giraldo, Alejandro; Pikkarainen, Sampsa; Clerk, Angela; Sugden, Peter H
2012-03-15
The canonical pathway of regulation of the GCK (germinal centre kinase) III subgroup member, MST3 (mammalian Sterile20-related kinase 3), involves a caspase-mediated cleavage between N-terminal catalytic and C-terminal regulatory domains with possible concurrent autophosphorylation of the activation loop MST3(Thr(178)), induction of serine/threonine protein kinase activity and nuclear localization. We identified an alternative 'non-canonical' pathway of MST3 activation (regulated primarily through dephosphorylation) which may also be applicable to other GCKIII (and GCKVI) subgroup members. In the basal state, inactive MST3 co-immunoprecipitated with the Golgi protein GOLGA2/gm130 (golgin A2/Golgi matrix protein 130). Activation of MST3 by calyculin A (a protein serine/threonine phosphatase 1/2A inhibitor) stimulated (auto)phosphorylation of MST3(Thr(178)) in the catalytic domain with essentially simultaneous cis-autophosphorylation of MST3(Thr(328)) in the regulatory domain, an event also requiring the MST3(341-376) sequence which acts as a putative docking domain. MST3(Thr(178)) phosphorylation increased MST3 kinase activity, but this activity was independent of MST3(Thr(328)) phosphorylation. Interestingly, MST3(Thr(328)) lies immediately C-terminal to a STRAD (Sterile20-related adaptor) pseudokinase-like site identified recently as being involved in binding of GCKIII/GCKVI members to MO25 scaffolding proteins. MST3(Thr(178)/Thr(328)) phosphorylation was concurrent with dissociation of MST3 from GOLGA2/gm130 and association of MST3 with MO25, and MST3(Thr(328)) phosphorylation was necessary for formation of the activated MST3-MO25 holocomplex.
Silvia Calo
2017-03-01
Full Text Available Mucorales are a group of basal fungi that includes the casual agents of the human emerging disease mucormycosis. Recent studies revealed that these pathogens activate an RNAi-based pathway to rapidly generate drug-resistant epimutant strains when exposed to stressful compounds such as the antifungal drug FK506. To elucidate the molecular mechanism of this epimutation pathway, we performed a genetic analysis in Mucor circinelloides that revealed an inhibitory role for the non-canonical RdRP-dependent Dicer-independent silencing pathway, which is an RNAi-based mechanism involved in mRNA degradation that was recently identified. Thus, mutations that specifically block the mRNA degradation pathway, such as those in the genes r3b2 and rdrp3, enhance the production of drug resistant epimutants, similar to the phenotype previously described for mutation of the gene rdrp1. Our genetic analysis also revealed two new specific components of the epimutation pathway related to the quelling induced protein (qip and a Sad-3-like helicase (rnhA, as mutations in these genes prevented formation of drug-resistant epimutants. Remarkably, drug-resistant epimutant production was notably increased in M. circinelloides f. circinelloides isolates from humans or other animal hosts. The host-pathogen interaction could be a stressful environment in which the phenotypic plasticity provided by the epimutant pathway might provide an advantage for these strains. These results evoke a model whereby balanced regulation of two different RNAi pathways is determined by the activation of the RNAi-dependent epimutant pathway under stress conditions, or its repression when the regular maintenance of the mRNA degradation pathway operates under non-stress conditions.
A New Noncanonical Anionic Peptide That Translocates a Cellular Blood–Brain Barrier Model
Sara Neves-Coelho
2017-10-01
Full Text Available The capacity to transport therapeutic molecules across the blood–brain barrier (BBB represents a breakthrough in the development of tools for the treatment of many central nervous system (CNS-associated diseases. The BBB, while being protective against infectious agents, hinders the brain uptake of many drugs. Hence, finding safe shuttles able to overcome the BBB is of utmost importance. Herein, we identify a new BBB-translocating peptide with unique properties. For years it was thought that cationic sequences were mandatory for a cell-penetrating peptide (CPP to achieve cellular internalization. Despite being anionic at physiological pH, PepNeg (sequence (SGTQEEY is an efficient BBB translocator that is able to carry a large cargo (27 kDa, while maintaining BBB integrity. In addition, PepNeg is able to use two distinct methods of translocation, energy-dependent and -independent, suggesting that direct penetration might occur when low concentrations of peptide are presented to cells. The discovery of this new anionic trans-BBB peptide allows the development of new delivery systems to the CNS and contributes to the need to rethink the role of electrostatic attraction in BBB-translocation.
Sarah Sertic
Full Text Available The Cullin-4(CDT2 E3 ubiquitin ligase plays an essential role in DNA replication origin licensing directing degradation of several licensing factors at the G1/S transition in order to prevent DNA re-replication. Recently a RAD18-independent role of Cullin-4(CDT2 in PCNA monoubiquitylation has been proposed. In an effort to better understand the function of Cullin-4(CDT2 E3 ubiquitin ligase in mammalian Post-Replication Repair during an unperturbed S-phase, we show that down-regulation of Cullin-4(CDT2 leads to two distinguishable independent phenotypes in human cells that unveil at least two independent roles of Cullin-4(CDT2 in S-phase. Apart from the re-replication preventing activity, we identified a non-canonical Cullin-4(CDT2 complex, containing both CUL4A and CUL4B, associated to the COP9 signalosome, that controls a RAD18-dependent damage avoidance pathway essential during an unperturbed S-phase. Indeed, we show that the non-canonical Cullin-4A/4B(CDT2 complex binds to RAD18 and it is required to modulate RAD18 protein levels onto chromatin and the consequent dynamics of PCNA monoubiquitylation during a normal S-phase. This function prevents replication stress, ATR hyper-signaling and, ultimately, apoptosis. A very similar PRR regulatory mechanism has been recently described for Spartan. Our findings uncover a finely regulated process in mammalian cells involving Post-Replication Repair factors, COP9 signalosome and a non-canonical Cullin4-based E3 ligase which is essential to tolerate spontaneous damage and for cell survival during physiological DNA replication.
Joseph L. Regan
2017-12-01
Full Text Available Summary: Colon cancer is a heterogeneous tumor driven by a subpopulation of cancer stem cells (CSCs. To study CSCs in colon cancer, we used limiting dilution spheroid and serial xenotransplantation assays to functionally define the frequency of CSCs in a panel of patient-derived cancer organoids. These studies demonstrated cancer organoids to be enriched for CSCs, which varied in frequency between tumors. Whole-transcriptome analysis identified WNT and Hedgehog signaling components to be enhanced in CSC-enriched tumors and in aldehyde dehydrogenase (ALDH-positive CSCs. Canonical GLI-dependent Hedgehog signaling is a negative regulator of WNT signaling in normal intestine and intestinal tumors. Here, we show that Hedgehog signaling in colon CSCs is autocrine SHH-dependent, non-canonical PTCH1 dependent, and GLI independent. In addition, using small-molecule inhibitors and RNAi against SHH-palmitoylating Hedgehog acyltransferase (HHAT, we demonstrate that non-canonical Hedgehog signaling is a positive regulator of WNT signaling and required for colon CSC survival. : Colon cancer is a heterogeneous tumor driven by a subpopulation(s of therapy-resistant cancer stem cells (CSCs. Regan et al. use 3D culture models to demonstrate that CSC survival is regulated by non-canonical, SHH-dependent, PTCH1-dependent Hedgehog signaling, which acts as a positive regulator of WNT signaling to block CSC differentiation. Keywords: WNT pathway, non-canonical Hedgehog signaling, cancer stem cell, colon cancer, cancer organoid, PTCH1, HHAT, SHH
Bai, Yongsheng; Kinne, Jeff; Ding, Lizhong; Rath, Ethan C; Cox, Aaron; Naidu, Siva Dharman
2017-10-03
It is generally thought that most canonical or non-canonical splicing events involving U2- and U12 spliceosomes occur within nuclear pre-mRNAs. However, the question of whether at least some U12-type splicing occurs in the cytoplasm is still unclear. In recent years next-generation sequencing technologies have revolutionized the field. The "Read-Split-Walk" (RSW) and "Read-Split-Run" (RSR) methods were developed to identify genome-wide non-canonical spliced regions including special events occurring in cytoplasm. As the significant amount of genome/transcriptome data such as, Encyclopedia of DNA Elements (ENCODE) project, have been generated, we have advanced a newer more memory-efficient version of the algorithm, "Read-Split-Fly" (RSF), which can detect non-canonical spliced regions with higher sensitivity and improved speed. The RSF algorithm also outputs the spliced sequences for further downstream biological function analysis. We used open access ENCODE project RNA-Seq data to search spliced intron sequences against the U12-type spliced intron sequence database to examine whether some events could occur as potential signatures of U12-type splicing. The check was performed by searching spliced sequences against 5'ss and 3'ss sequences from the well-known orthologous U12-type spliceosomal intron database U12DB. Preliminary results of searching 70 ENCODE samples indicated that the presence of 5'ss with U12-type signature is more frequent than U2-type and prevalent in non-canonical junctions reported by RSF. The selected spliced sequences have also been further studied using miRBase to elucidate their functionality. Preliminary results from 70 samples of ENCODE datasets show that several miRNAs are prevalent in studied ENCODE samples. Two of these are associated with many diseases as suggested in the literature. Specifically, hsa-miR-1273 and hsa-miR-548 are associated with many diseases and cancers. Our RSF pipeline is able to detect many possible junctions
An integrable counterpart of the D-AKNS soliton hierarchy from so(3,R)
Ma, Wen-Xiu
2014-01-01
An integrable counterpart of the D-AKNS soliton hierarchy is generated from a matrix spectral problem associated with so(3,R). Hamiltonian structures of the resulting counterpart soliton hierarchy are furnished by using the trace identity, which yields its Liouville integrability. -- Highlights: •Use the Lie algebra so(3,R) to generate a counterpart of the D-AKNS soliton hierarchy. •Generate Hamiltonian structures depending potentials by the trace identity. •Obtain hierarchies of independent commuting symmetries and conserved densities.
Dynamics, integrability and topology for some classes of Kolmogorov Hamiltonian systems in R+4
Llibre, Jaume; Xiao, Dongmei
2017-02-01
In this paper we first give the sufficient and necessary conditions in order that two classes of polynomial Kolmogorov systems in R+4 are Hamiltonian systems. Then we study the integrability of these Hamiltonian systems in the Liouville sense. Finally, we investigate the global dynamics of the completely integrable Lotka-Volterra Hamiltonian systems in R+4. As an application of the invariant subsets of these systems, we obtain topological classifications of the 3-submanifolds in R+4 defined by the hypersurfaces axy + bzw + cx2 y + dxy2 + ez2 w + fzw2 = h, where a , b , c , d , e , f , w and h are real constants.
Sergyeyev, Artur [Mathematical Institute, Silesian University in Opava, Na RybnIcku 1, 746 01 Opava (Czech Republic); Blaszak, Maciej [Institute of Physics, A Mickiewicz University, Umultowska 85, 61-614 Poznan (Poland)], E-mail: Artur.Sergyeyev@math.slu.cz, E-mail: blaszakm@amu.edu.pl
2008-03-14
We present a multiparameter generalization of the Staeckel transform (the latter is also known as the coupling-constant metamorphosis) and show that under certain conditions this generalized Staeckel transform preserves Liouville integrability, noncommutative integrability and superintegrability. The corresponding transformation for the equations of motion proves to be nothing but a reciprocal transformation of a special form, and we investigate the properties of this reciprocal transformation. Finally, we show that the Hamiltonians of the systems possessing separation curves of apparently very different form can be related through a suitably chosen generalized Staeckel transform.
Chatterjee, Budhaditya; Banoth, Balaji; Mukherjee, Tapas; Taye, Nandaraj; Vijayaragavan, Bharath; Chattopadhyay, Samit; Gomes, James; Basak, Soumen
2016-01-01
The nuclear factor ��B (NF-��B) transcription factors coordinate the inflammatory immune response during microbial infection. Pathogenic substances engage canonical NF-��B signaling through the heterodimer RelA:p50, which is subjected to rapid negative feedback by inhibitor of ��B�� (I��B��). The noncanonical NF-��B pathway is required for the differentiation of immune cells; however, crosstalk between both pathways can occur. Concomitantly activated noncanonical signaling generates p52 from ...
The differential-geometric aspects of integrable dynamical systems
Prykarpatsky, Y.A.; Samoilenko, A.M.; Prykarpatsky, A.K.; Bogolubov, N.N. Jr.; Blackmore, D.L.
2007-05-01
The canonical reduction method on canonically symplectic manifolds is analyzed in detail, and the relationships with the geometric properties of associated principal fiber bundles endowed with connection structures are described. Some results devoted to studying geometrical properties of nonabelian Yang-Mills type gauge field equations are presented. A symplectic theory approach is developed for partially solving the problem of algebraic-analytical construction of integral submanifold embeddings for integrable (via the abelian and nonabelian Liouville-Arnold theorems) Hamiltonian systems on canonically symplectic phase spaces. The fundamental role of the so-called Picard-Fuchs type equations is revealed, and their differential-geometric and algebraic properties are studied in detail. Some interesting examples of integrable Hamiltonian systems are are studied in detail in order to demonstrate the ease of implementation and effectiveness of the procedure for investigating the integral submanifold embedding mapping. (author)
Yuwei Zhang
exposure, as well as Li Fraumeni fibroblasts in the absence of pharmacologically-induced DNA damage.A279T induces telomere dysfunction and inhibits non-canonical telomerase activity in esophageal cancer cells. These findings warrant further analysis of A279T expression in esophageal cancers and premalignant esophageal lesions.
A noncanonical Flt3ITD/NF-κB signaling pathway represses DAPK1 in acute myeloid leukemia.
Shanmugam, Rajasubramaniam; Gade, Padmaja; Wilson-Weekes, Annique; Sayar, Hamid; Suvannasankha, Attaya; Goswami, Chirayu; Li, Lang; Gupta, Sushil; Cardoso, Angelo A; Baghdadi, Tareq Al; Sargent, Katie J; Cripe, Larry D; Kalvakolanu, Dhananjaya V; Boswell, H Scott
2012-01-15
Death-associated protein kinase 1 (DAPK1), a tumor suppressor, is a rate-limiting effector in an endoplasmic reticulum (ER) stress-dependent apoptotic pathway. Its expression is epigenetically suppressed in several tumors. A mechanistic basis for epigenetic/transcriptional repression of DAPK1 was investigated in certain forms of acute myeloid leukemia (AML) with poor prognosis, which lacked ER stress-induced apoptosis. Heterogeneous primary AMLs were screened to identify a subgroup with Flt3ITD in which repression of DAPK1, among NF-κB-and c-Jun-responsive genes, was studied. RNA interference knockdown studies were carried out in an Flt3ITD(+) cell line, MV-4-11, to establish genetic epistasis in the pathway Flt3ITD-TAK1-DAPK1 repression, and chromatin immunoprecipitations were carried out to identify proximate effector proteins, including TAK1-activated p52NF-κB, at the DAPK1 locus. AMLs characterized by normal karyotype with Flt3ITD were found to have 10- to 100-fold lower DAPK1 transcripts normalized to the expression of c-Jun, a transcriptional activator of DAPK1, as compared with a heterogeneous cytogenetic category. In addition, Meis1, a c-Jun-responsive adverse AML prognostic gene signature was measured as control. These Flt3ITD(+) AMLs overexpress relB, a transcriptional repressor, which forms active heterodimers with p52NF-κB. Chromatin immunoprecipitation assays identified p52NF-κB binding to the DAPK1 promoter together with histone deacetylase 2 (HDAC2) and HDAC6 in the Flt3ITD(+) human AML cell line MV-4-11. Knockdown of p52NF-κB or its upstream regulator, NF-κB-inducing kinase (NIK), de-repressed DAPK1. DAPK1-repressed primary Flt3ITD(+) AMLs had selective nuclear activation of p52NF-κB. Flt3ITD promotes a noncanonical pathway via TAK1 and p52NF-κB to suppress DAPK1 in association with HDACs, which explains DAPK1 repression in Flt3ITD(+) AML. ©2011 AACR.
Joshua R. Kane
2015-05-01
Full Text Available HIV-1 encodes the accessory protein Vif, which hijacks a host Cullin-RING ubiquitin ligase (CRL complex as well as the non-canonical cofactor CBFβ, to antagonize APOBEC3 antiviral proteins. Non-canonical cofactor recruitment to CRL complexes by viral factors, to date, has only been attributed to HIV-1 Vif. To further study this phenomenon, we employed a comparative approach combining proteomic, biochemical, structural, and virological techniques to investigate Vif complexes across the lentivirus genus, including primate (HIV-1 and simian immunodeficiency virus macaque [SIVmac] and non-primate (FIV, BIV, and MVV viruses. We find that CBFβ is completely dispensable for the activity of non-primate lentiviral Vif proteins. Furthermore, we find that BIV Vif requires no cofactor and that MVV Vif requires a novel cofactor, cyclophilin A (CYPA, for stable CRL complex formation and anti-APOBEC3 activity. We propose modular conservation of Vif complexes allows for potential exaptation of functions through the acquisition of non-CRL-associated host cofactors while preserving anti-APOBEC3 activity.
Castellano, Leandro; Stebbing, Justin
2013-03-01
MicroRNAs (miRNAs) are small RNA molecules that regulate gene expression. They are characterized by specific maturation processes defined by canonical and non-canonical biogenic pathways. Analysis of ∼0.5 billion sequences from mouse data sets derived from different tissues, developmental stages and cell types, partly characterized by either ablation or mutation of the main proteins belonging to miRNA processor complexes, reveals 66 high-confidence new genomic loci coding for miRNAs that could be processed in a canonical or non-canonical manner. A proportion of the newly discovered miRNAs comprises mirtrons, for which we define a new sub-class. Notably, some of these newly discovered miRNAs are generated from untranslated and open reading frames of coding genes, and we experimentally validate these. We also show that many annotated miRNAs do not present miRNA-like features, as they are neither processed by known processing complexes nor loaded on AGO2; this indicates that the current miRNA miRBase database list should be refined and re-defined. Accordingly, a group of them map on ribosomal RNA molecules, whereas others cannot undergo genuine miRNA biogenesis. Notably, a group of annotated miRNAs are Dgcr8 independent and DICER dependent endogenous small interfering RNAs that derive from a unique hairpin formed from a short interspersed nuclear element.
Nan-Sun Kim
Full Text Available A chimeric protein vaccine composed of the cholera toxin B subunit fused to proinsulin (CTB-INS was shown to suppress type 1 diabetes onset in NOD mice and upregulate biosynthesis of the tryptophan catabolic enzyme indoleamine 2, 3-dioxygenase (IDO1 in human dendritic cells (DCs. Here we demonstrate siRNA inhibition of the NF-κB-inducing kinase (NIK suppresses vaccine-induced IDO1 biosynthesis as well as IKKα phosphorylation. Chromatin immunoprecipitation (ChIP analysis of CTB-INS inoculated DCs showed that RelB bound to NF-κB consensus sequences in the IDO1 promoter, suggesting vaccine stimulation of the non-canonical NF-κB pathway activates IDO1 expression in vivo. The addition of Tumor Necrosis Factor Associated Factors (TRAF TRAF 2, 3 and TRAF6 blocking peptides to vaccine inoculated DCs was shown to inhibit IDO1 biosynthesis. This experimental outcome suggests vaccine activation of the TNFR super-family receptor pathway leads to upregulation of IDO1 biosynthesis in CTB-INS inoculated dendritic cells. Together, our experimental data suggest the CTB-INS vaccine uses a TNFR-dependent signaling pathway of the non-canonical NF-κB signaling pathway resulting in suppression of dendritic cell mediated type 1 diabetes autoimmunity.
Antoniali, Giulia; Lirussi, Lisa; Poletto, Mattia; Tell, Gianluca
2014-02-01
An emerging concept in DNA repair mechanisms is the evidence that some key enzymes, besides their role in the maintenance of genome stability, display also unexpected noncanonical functions associated with RNA metabolism in specific subcellular districts (e.g., nucleoli). During the evolution of these key enzymes, the acquisition of unfolded domains significantly amplified the possibility to interact with different partners and substrates, possibly explaining their phylogenetic gain of functions. After nucleolar stress or DNA damage, many DNA repair proteins can freely relocalize from nucleoli to the nucleoplasm. This process may represent a surveillance mechanism to monitor the synthesis and correct assembly of ribosomal units affecting cell cycle progression or inducing p53-mediated apoptosis or senescence. A paradigm for this kind of regulation is represented by some enzymes of the DNA base excision repair (BER) pathway, such as apurinic/apyrimidinic endonuclease 1 (APE1). In this review, the role of the nucleolus and the noncanonical functions of the APE1 protein are discussed in light of their possible implications in human pathologies. A productive cross-talk between DNA repair enzymes and proteins involved in RNA metabolism seems reasonable as the nucleolus is emerging as a dynamic functional hub that coordinates cell growth arrest and DNA repair mechanisms. These findings will drive further analyses on other BER proteins and might imply that nucleic acid processing enzymes are more versatile than originally thought having evolved DNA-targeted functions after a previous life in the early RNA world.
Bischoff, David S; Zhu, Jian-Hua; Makhijani, Nalini S; Yamaguchi, Dean T
2015-12-26
To investigate the effect of secreted frizzled-related proteins (sFRPs) on CXC chemokine expression in human mesenchymal stem cells (hMSCs). CXC chemokines such as CXCL5 and CXCL8 are induced in hMSCs during differentiation with osteogenic differentiation medium (OGM) and may be involved in angiogenic stimulation during bone repair. hMSCs were treated with conditioned medium (CM) from L-cells expressing non-canonical Wnt5a protein, or with control CM from wild type L-cells, or directly with sFRPs for up to 10 d in culture. mRNA expression levels of both CXCL5 and CXCL8 were quantitated by real-time reverse transcriptase-polymerase chain reaction and secreted protein levels of these proteins determined by ELISA. Dose- (0-500 ng/mL) and time-response curves were generated for treatment with sFRP1. Signal transduction pathways were explored by western blot analysis with pan- or phosphorylation-specific antibodies, through use of specific pathway inhibitors, and through use of siRNAs targeting specific frizzled receptors (Fzd)-2 and 5 or the receptor tyrosine kinase-like orphan receptor-2 (RoR2) prior to treatment with sFRPs. CM from L-cells expressing Wnt5a, a non-canonical Wnt, stimulated an increase in CXCL5 mRNA expression and protein secretion in comparison to control L-cell CM. sFRP1, which should inhibit both canonical and non-canonical Wnt signaling, surprisingly enhanced the expression of CXCL5 at 7 and 10 d. Dickkopf1, an inhibitor of canonical Wnt signaling prevented the sFRP-stimulated induction of CXCL5 and actually inhibited basal levels of CXCL5 expression at 7 but not at 10 d post treatment. In addition, all four sFRPs isoforms induced CXCL8 expression in a dose- and time-dependent manner with maximum expression at 7 d with treatment at 150 ng/mL. The largest increases in CXCL5 expression were seen from stimulation with sFRP1 or sFRP2. Analysis of mitogen-activated protein kinase signaling pathways in the presence of OGM showed sFRP1-induced
Noncanonical Reactions of Flavoenzymes
Pablo Sobrado
2012-11-01
Full Text Available Enzymes containing flavin cofactors are predominantly involved in redox reactions in numerous cellular processes where the protein environment modulates the chemical reactivity of the flavin to either transfer one or two electrons. Some flavoenzymes catalyze reactions with no net redox change. In these reactions, the protein environment modulates the reactivity of the flavin to perform novel chemistries. Recent mechanistic and structural data supporting novel flavin functionalities in reactions catalyzed by chorismate synthase, type II isopentenyl diphosphate isomerase, UDP-galactopyranose mutase, and alkyl-dihydroxyacetonephosphate synthase are presented in this review. In these enzymes, the flavin plays either a direct role in acid/base reactions or as a nucleophile or electrophile. In addition, the flavin cofactor is proposed to function as a “molecular scaffold” in the formation of UDP-galactofuranose and alkyl-dihydroxyacetonephosphate by forming a covalent adduct with reaction intermediates.
Guo Fukui; Zhang Yufeng
2004-01-01
A new subalgebra of loop algebra A-tilde 1 is first constructed. Then a new Lax pair is presented, whose compatibility gives rise to a new Liouville integrable system(called a major result), possessing bi-Hamiltonian structures. It is remarkable that two symplectic operators obtained in this paper are directly constructed in terms of the recurrence relations. As reduction cases of the new integrable system obtained, the famous AKNS hierarchy and the KN hierarchy are obtained, respectively. Second, we prove a conjugate operator of a recurrence operator is a hereditary symmetry. Finally, we construct a high dimension loop algebra G-bar to obtain an integrable coupling system of the major result by making use of Tu scheme. In addition, we find the major result obtained is a unified expressing integrable model of both the AKNS and KN hierarchies, of course, we may also regard the major result as an expanding integrable model of the AKNS and KN hierarchies. Thus, we succeed to find an example of expanding integrable models being Liouville integrable
Generalized fractional integration of the \\overline{H}-function
Praveen Agarwal
2012-11-01
Full Text Available A significantly large number of earlier works on the subject of fractional calculus give interesting account of the theory and applications of fractional calculus operators in many different areas of mathematical analysis (such as ordinary and partial differential equations, integral equations, special functions, summation of series, et cetera. In the present paper, we study and develop the generalized fractional integral operators given by Saigo. First, we establish two Theorems that give the images of the product of H-function and a general class of polynomials inSaigo operators. On account of the general nature of the Saigo operators, H-function and a general class of polynomials a large number of new and known Images involving Riemann-Liouville and Erdélyi-Kober fractional integral operators and several special functions notably generalized Wright hypergeometric function, generalized Wright-Bessel function, the polylogarithm and Mittag-Leffler functions follow as special cases of our main findings.
Feeney, Morgan A; Chandra, Govind; Findlay, Kim C; Paget, Mark S B; Buttner, Mark J
2017-06-13
The major oxidative stress response in Streptomyces is controlled by the sigma factor SigR and its cognate antisigma factor RsrA, and SigR activity is tightly controlled through multiple mechanisms at both the transcriptional and posttranslational levels. Here we show that sigR has a highly unusual GTC start codon and that this leads to another level of SigR regulation, in which SigR translation is repressed by translation initiation factor 3 (IF3). Changing the GTC to a canonical start codon causes SigR to be overproduced relative to RsrA, resulting in unregulated and constitutive expression of the SigR regulon. Similarly, introducing IF3* mutations that impair its ability to repress SigR translation has the same effect. Thus, the noncanonical GTC sigR start codon and its repression by IF3 are critical for the correct and proper functioning of the oxidative stress regulatory system. sigR and rsrA are cotranscribed and translationally coupled, and it had therefore been assumed that SigR and RsrA are produced in stoichiometric amounts. Here we show that RsrA can be transcribed and translated independently of SigR, present evidence that RsrA is normally produced in excess of SigR, and describe the factors that determine SigR-RsrA stoichiometry. IMPORTANCE In all sigma factor-antisigma factor regulatory switches, the relative abundance of the two proteins is critical to the proper functioning of the system. Many sigma-antisigma operons are cotranscribed and translationally coupled, leading to a generic assumption that the sigma and antisigma factors are produced in a fixed 1:1 ratio. In the case of sigR - rsrA , we show instead that the antisigma factor is produced in excess over the sigma factor, providing a buffer to prevent spurious release of sigma activity. This excess arises in part because sigR has an extremely rare noncanonical GTC start codon, and as a result, SigR translation initiation is repressed by IF3. This finding highlights the potential significance
Zakia A. Abdelhamed
2015-06-01
Full Text Available Ciliopathies are a group of developmental disorders that manifest with multi-organ anomalies. Mutations in TMEM67 (MKS3 cause a range of human ciliopathies, including Meckel-Gruber and Joubert syndromes. In this study we describe multi-organ developmental abnormalities in the Tmem67tm1Dgen/H1 knockout mouse that closely resemble those seen in Wnt5a and Ror2 knockout mice. These include pulmonary hypoplasia, ventricular septal defects, shortening of the body longitudinal axis, limb abnormalities, and cochlear hair cell stereociliary bundle orientation and basal body/kinocilium positioning defects. The basal body/kinocilium complex was often uncoupled from the hair bundle, suggesting aberrant basal body migration, although planar cell polarity and apical planar asymmetry in the organ of Corti were normal. TMEM67 (meckelin is essential for phosphorylation of the non-canonical Wnt receptor ROR2 (receptor-tyrosine-kinase-like orphan receptor 2 upon stimulation with Wnt5a-conditioned medium. ROR2 also colocalises and interacts with TMEM67 at the ciliary transition zone. Additionally, the extracellular N-terminal domain of TMEM67 preferentially binds to Wnt5a in an in vitro binding assay. Cultured lungs of Tmem67 mutant mice failed to respond to stimulation of epithelial branching morphogenesis by Wnt5a. Wnt5a also inhibited both the Shh and canonical Wnt/β-catenin signalling pathways in wild-type embryonic lung. Pulmonary hypoplasia phenotypes, including loss of correct epithelial branching morphogenesis and cell polarity, were rescued by stimulating the non-canonical Wnt pathway downstream of the Wnt5a-TMEM67-ROR2 axis by activating RhoA. We propose that TMEM67 is a receptor that has a main role in non-canonical Wnt signalling, mediated by Wnt5a and ROR2, and normally represses Shh signalling. Downstream therapeutic targeting of the Wnt5a-TMEM67-ROR2 axis might, therefore, reduce or prevent pulmonary hypoplasia in ciliopathies and other congenital
Non-integrability of the Anisotropic Stormer Problem and the Isosceles Three-Body Problem
Nomikos, D. G.; Papageorgiou, V. G.
2009-02-01
We study the Anisotropic Stormer Problem (ASP) and the Isosceles Three-Body Problem (IP), from the viewpoint of integrability, using Morales-Ramis theory and its generalization. The study of their integrability presents particular interest since they model important physical phenomena. Both problems can be reduced with respect to the S1 symmetry. Almeida and Stuchi [M.A. Almeida, T.J. Stuchi, Non-integrability of the anisotropic Stormer problem with angular momentum, Physica D 189 (2004) 219-233] proved that the reduced ASP is non-integrable for almost all values of the parameters. In this paper we establish the non-integrability (in the extended Liouville sense) of the remaining cases. The IP is a special case of the three-body problem and it can be considered as a generalization of the Sitnikov problem. Here we prove that the complexified reduced IP does not admit an additional independent meromorphic first integral.
Asymptotic integration of some nonlinear differential equations with fractional time derivative
Baleanu, Dumitru; Agarwal, Ravi P; Mustafa, Octavian G; Cosulschi, Mirel
2011-01-01
We establish that, under some simple integral conditions regarding the nonlinearity, the (1 + α)-order fractional differential equation 0 D α t (x') + f(t, x) = 0, t > 0, has a solution x element of C([0,+∞),R) intersection C 1 ((0,+∞),R), with lim t→0 [t 1-α x'(t)] element of R, which can be expanded asymptotically as a + bt α + O(t α-1 ) when t → +∞ for given real numbers a, b. Our arguments are based on fixed point theory. Here, 0 D α t designates the Riemann-Liouville derivative of order α in (0, 1).
Hamiltonian structures and integrability for a discrete coupled KdV-type equation hierarchy
Zhao Haiqiong; Zhu Zuonong; Zhang Jingli
2011-01-01
Coupled Korteweg-de Vries (KdV) systems have many important physical applications. By considering a 4 × 4 spectral problem, we derive a discrete coupled KdV-type equation hierarchy. Our hierarchy includes the coupled Volterra system proposed by Lou et al. (e-print arXiv: 0711.0420) as the first member which is a discrete version of the coupled KdV equation. We also investigate the integrability in the Liouville sense and the multi-Hamiltonian structures for the obtained hierarchy. (authors)
Bai, Yongsheng; Kinne, Jeff; Donham, Brandon; Jiang, Feng; Ding, Lizhong; Hassler, Justin R; Kaufman, Randal J
2016-08-22
Most existing tools for detecting next-generation sequencing-based splicing events focus on generic splicing events. Consequently, special types of non-canonical splicing events of short mRNA regions (IRE1α targeted) have not yet been thoroughly addressed at a genome-wide level using bioinformatics approaches in conjunction with next-generation technologies. During endoplasmic reticulum (ER) stress, the gene encoding the RNase Ire1α is known to splice out a short 26 nt region from the mRNA of the transcription factor Xbp1 non-canonically within the cytosol. This causes an open reading frame-shift that induces expression of many downstream genes in reaction to ER stress as part of the unfolded protein response (UPR). We previously published an algorithm termed "Read-Split-Walk" (RSW) to identify non-canonical splicing regions using RNA-Seq data and applied it to ER stress-induced Ire1α heterozygote and knockout mouse embryonic fibroblast cell lines. In this study, we have developed an improved algorithm "Read-Split-Run" (RSR) for detecting genome-wide Ire1α-targeted genes with non-canonical spliced regions at a faster speed. We applied the RSR algorithm using different combinations of several parameters to the previously RSW tested mouse embryonic fibroblast cells (MEF) and the human Encyclopedia of DNA Elements (ENCODE) RNA-Seq data. We also compared the performance of RSR with two other alternative splicing events identification tools (TopHat (Trapnell et al., Bioinformatics 25:1105-1111, 2009) and Alt Event Finder (Zhou et al., BMC Genomics 13:S10, 2012)) utilizing the context of the spliced Xbp1 mRNA as a positive control in the data sets we identified it to be the top cleavage target present in Ire1α (+/-) but absent in Ire1α (-/-) MEF samples and this comparison was also extended to human ENCODE RNA-Seq data. Proof of principle came in our results by the fact that the 26 nt non-conventional splice site in Xbp1 was detected as the top hit by our new RSR
Mahajan, Sai Pooja; Velez-Vega, Camilo; Escobedo, Fernando A
2013-01-10
Nanobodies are single-domain antibodies found in camelids. These are the smallest naturally occurring binding domains and derive functionality via three hypervariable loops (H1-H3) that form the binding surface. They are excellent candidates for antibody engineering because of their favorable characteristics like small size, high solubility, and stability. To rationally engineer antibodies with affinity for a specific target, the hypervariable loops can be tailored to obtain the desired binding surface. As a first step toward such a goal, we consider the design of loops with a desired conformation. In this study, we focus on the H1 loop of the anti-hCG llama nanobody that exhibits a noncanonical conformation. We aim to "tilt" the stability of the H1 loop structure from a noncanonical conformation to a (humanized) type 1 canonical conformation by studying the effect of selected mutations to the amino acid sequence of the H1, H2, and proximal residues. We use all-atomistic, explicit-solvent, biased molecular dynamic simulations to simulate the wild-type and mutant loops in a prefolded framework. We thus find mutants with increasing propensity to form a stable type 1 canonical conformation of the H1 loop. Free energy landscapes reveal the existence of conformational isomers of the canonical conformation that may play a role in binding different antigenic surfaces. We also elucidate the approximate mechanism and kinetics of transitions between such conformational isomers by using a Markovian model. We find that a particular three-point mutant has the strongest thermodynamic propensity to form the H1 type 1 canonical structure but also to exhibit transitions between conformational isomers, while a different, more rigid three-point mutant has the strongest propensity to be kinetically trapped in such a canonical structure.
Kamasawa, Masami; Horiuchi, Jun-Ichi
2009-05-01
Computational prediction of polyadenylation signals (PASes) is essential for analysis of alternative polyadenylation that plays crucial roles in gene regulations by generating heterogeneity of 3'-UTR of mRNAs. To date, several algorithms that are mostly based on machine learning methods have been developed to predict PASes. Accuracies of predictions by those algorithms have improved significantly for the last decade. However, they are designed primarily for prediction of the most canonical AAUAAA and its common variant AUUAAA whereas other variants have been ignored in their predictions despite recent studies indicating that non-canonical variants of AAUAAA are more important in the polyadenylation process than commonly recognized. Here we present a new algorithm "PolyF" employing fuzzy logic to confer an advance in computational PAS prediction--enable prediction of the non-canonical variants, and improve the accuracies for the canonical A(A/U)UAAA prediction. PolyF is a simple computational algorithm that is composed of membership functions defining sequence features of downstream sequence element (DSE) and upstream sequence element (USE), together with an inference engine. As a result, PolyF successfully identified the 10 single-nucleotide variants with approximately the same or higher accuracies compared to those for A(A/U)UAAA. PolyF also achieved higher accuracies for A(A/U)UAAA prediction than those by commonly known PAS finder programs, Polyadq and Erpin. Incorporating the USE into the PolyF algorithm was found to enhance prediction accuracies for all the 12 PAS hexamers compared to those using only the DSE, suggesting an important contribution of the USE in the polyadenylation process.
Degenerate variational integrators for magnetic field line flow and guiding center trajectories
Ellison, C. L.; Finn, J. M.; Burby, J. W.; Kraus, M.; Qin, H.; Tang, W. M.
2018-05-01
Symplectic integrators offer many benefits for numerically approximating solutions to Hamiltonian differential equations, including bounded energy error and the preservation of invariant sets. Two important Hamiltonian systems encountered in plasma physics—the flow of magnetic field lines and the guiding center motion of magnetized charged particles—resist symplectic integration by conventional means because the dynamics are most naturally formulated in non-canonical coordinates. New algorithms were recently developed using the variational integration formalism; however, those integrators were found to admit parasitic mode instabilities due to their multistep character. This work eliminates the multistep character, and therefore the parasitic mode instabilities via an adaptation of the variational integration formalism that we deem "degenerate variational integration." Both the magnetic field line and guiding center Lagrangians are degenerate in the sense that the resultant Euler-Lagrange equations are systems of first-order ordinary differential equations. We show that retaining the same degree of degeneracy when constructing discrete Lagrangians yields one-step variational integrators preserving a non-canonical symplectic structure. Numerical examples demonstrate the benefits of the new algorithms, including superior stability relative to the existing variational integrators for these systems and superior qualitative behavior relative to non-conservative algorithms.
Fractional order differentiation by integration with Jacobi polynomials
Liu, Dayan
2012-12-01
The differentiation by integration method with Jacobi polynomials was originally introduced by Mboup, Join and Fliess [22], [23]. This paper generalizes this method from the integer order to the fractional order for estimating the fractional order derivatives of noisy signals. The proposed fractional order differentiator is deduced from the Jacobi orthogonal polynomial filter and the Riemann-Liouville fractional order derivative definition. Exact and simple formula for this differentiator is given where an integral formula involving Jacobi polynomials and the noisy signal is used without complex mathematical deduction. Hence, it can be used both for continuous-time and discrete-time models. The comparison between our differentiator and the recently introduced digital fractional order Savitzky-Golay differentiator is given in numerical simulations so as to show its accuracy and robustness with respect to corrupting noises. © 2012 IEEE.
Fractional order differentiation by integration with Jacobi polynomials
Liu, Dayan; Gibaru, O.; Perruquetti, Wilfrid; Laleg-Kirati, Taous-Meriem
2012-01-01
The differentiation by integration method with Jacobi polynomials was originally introduced by Mboup, Join and Fliess [22], [23]. This paper generalizes this method from the integer order to the fractional order for estimating the fractional order derivatives of noisy signals. The proposed fractional order differentiator is deduced from the Jacobi orthogonal polynomial filter and the Riemann-Liouville fractional order derivative definition. Exact and simple formula for this differentiator is given where an integral formula involving Jacobi polynomials and the noisy signal is used without complex mathematical deduction. Hence, it can be used both for continuous-time and discrete-time models. The comparison between our differentiator and the recently introduced digital fractional order Savitzky-Golay differentiator is given in numerical simulations so as to show its accuracy and robustness with respect to corrupting noises. © 2012 IEEE.
Xu Xixiang
2012-01-01
Highlights: ► We deduce a family of integrable differential–difference equations. ► We present a discrete Hamiltonian operator involving two arbitrary real parameters. ► We establish the bi-Hamiltonian structure for obtained integrable family. ► Liouvolle integrability of the obtained family is demonstrated. ► Every equation in obtained family is factored through the binary nonlinearization. - Abstract: A family of integrable differential–difference equations is derived by the method of Lax pairs. A discrete Hamiltonian operator involving two arbitrary real parameters is introduced. When the parameters are suitably selected, a pair of discrete Hamiltonian operators is presented. Bi-Hamiltonian structure of obtained family is established by discrete trace identity. Then, Liouville integrability for the obtained family is proved. Ultimately, through the binary nonlinearization of the Lax pairs and adjoint Lax pairs, every differential–difference equation in obtained family is factored by an integrable symplectic map and a finite-dimensional integrable system in Liouville sense.
An integrable (2+1)-dimensional Toda equation with two discrete variables
Cao Cewen; Cao Jianli
2007-01-01
An integrable (2+1)-dimensional Toda equation with two discrete variables is presented from the compatible condition of a Lax triad composed of the ZS-AKNS (Zakharov, Shabat; Ablowitz, Kaup, Newell, Segur) eigenvalue problem and two discrete spectral problems. Through the nonlinearization technique, the Lax triad is transformed into a Hamiltonian system and two symplectic maps, respectively, which are integrable in the Liouville sense, sharing the same set of integrals, functionally independent and involutive with each other. In the Jacobi variety of the associated algebraic curve, both the continuous and the discrete flows are straightened out by the Abel-Jacobi coordinates, and are integrated by quadratures. An explicit algebraic-geometric solution in the original variable is obtained by the Riemann-Jacobi inversion
Tian, Feng; Zhang, Ya Jie; Li, Yu; Xie, Ying
2014-01-01
Our aim was to test whether pharmacological inhibition of cycloxygenase-2 (COX-2) reverses non-alcoholic steatohepatitis (NASH) in type 2 diabetes mellitus (T2DM) rats via suppression of the non-canonical Wnt signaling pathway expression. Twenty-four male Sprague-Dawley rats were randomly distributed to two groups and were fed with a high fat and sucrose (HF-HS) diet or a normal chow diet, respectively. After four weeks, rats fed with a HF-HS diet were made diabetic with low-dose streptozotocin. At the 9th week the diabetic rats fed with a HF-HS diet or the non-diabetic rats fed with a normal chow diet were further divided into two subgroups treated with vehicle or celecoxib (a selective COX-2 inhibitor, 10 mg/Kg/day, gavage) for the last 4 weeks, respectively. At the end of the 12th week, rats were anesthetized. NASH was assessed by histology. Related cytokine expression was measured at both the protein and gene levels through immunohistochemistry (IHC), Western blot and real-time PCR. T2DM rats fed with a HF-HS diet developed steatohepatitis and insulin resistance associated with elevated serum alanine aminotransferase (ALT), aspartate aminotransferase (AST), insulin levels and the non-alcoholic fatty liver disease (NAFLD) activity score (NAS). The expression of Wnt5a, JNK1, NF-κB p65, and COX-2 were all significantly increased in the T2DM-NASH group compared with the control and control-cele group. Hepatic injury was improved by celecoxib in T2DM-NASH-Cele group indicated by reduced serum ALT and AST levels and hepatic inflammation was reduced by celecoxib showed by histology and the NAFLD activity score (NAS). Serum related metabolic parameters, HOMA-IR and insulin sensitivity index were all improved by celecoxib. The expression of Wnt5a, JNK1, NF-κB p65, and COX-2 expression were all suppressed by celecoxib in T2DM-NASH-Cele group. The results of the present study indicated that celecoxib ameliorated NASH in T2DM rats via suppression of the non-canonical Wnt
Covariant path integrals on hyperbolic surfaces
Schaefer, Joe
1997-11-01
DeWitt's covariant formulation of path integration [B. De Witt, "Dynamical theory in curved spaces. I. A review of the classical and quantum action principles," Rev. Mod. Phys. 29, 377-397 (1957)] has two practical advantages over the traditional methods of "lattice approximations;" there is no ordering problem, and classical symmetries are manifestly preserved at the quantum level. Applying the spectral theorem for unbounded self-adjoint operators, we provide a rigorous proof of the convergence of certain path integrals on Riemann surfaces of constant curvature -1. The Pauli-DeWitt curvature correction term arises, as in DeWitt's work. Introducing a Fuchsian group Γ of the first kind, and a continuous, bounded, Γ-automorphic potential V, we obtain a Feynman-Kac formula for the automorphic Schrödinger equation on the Riemann surface ΓH. We analyze the Wick rotation and prove the strong convergence of the so-called Feynman maps [K. D. Elworthy, Path Integration on Manifolds, Mathematical Aspects of Superspace, edited by Seifert, Clarke, and Rosenblum (Reidel, Boston, 1983), pp. 47-90] on a dense set of states. Finally, we give a new proof of some results in C. Grosche and F. Steiner, "The path integral on the Poincare upper half plane and for Liouville quantum mechanics," Phys. Lett. A 123, 319-328 (1987).
Fractional Order Differentiation by Integration and Error Analysis in Noisy Environment
Liu, Dayan
2015-03-31
The integer order differentiation by integration method based on the Jacobi orthogonal polynomials for noisy signals was originally introduced by Mboup, Join and Fliess. We propose to extend this method from the integer order to the fractional order to estimate the fractional order derivatives of noisy signals. Firstly, two fractional order differentiators are deduced from the Jacobi orthogonal polynomial filter, using the Riemann-Liouville and the Caputo fractional order derivative definitions respectively. Exact and simple formulae for these differentiators are given by integral expressions. Hence, they can be used for both continuous-time and discrete-time models in on-line or off-line applications. Secondly, some error bounds are provided for the corresponding estimation errors. These bounds allow to study the design parameters\\' influence. The noise error contribution due to a large class of stochastic processes is studied in discrete case. The latter shows that the differentiator based on the Caputo fractional order derivative can cope with a class of noises, whose mean value and variance functions are polynomial time-varying. Thanks to the design parameters analysis, the proposed fractional order differentiators are significantly improved by admitting a time-delay. Thirdly, in order to reduce the calculation time for on-line applications, a recursive algorithm is proposed. Finally, the proposed differentiator based on the Riemann-Liouville fractional order derivative is used to estimate the state of a fractional order system and numerical simulations illustrate the accuracy and the robustness with respect to corrupting noises.
symmetrically deformed integrable systems
plex Liouville theory, a rigorous proof for the reality of the spectrum was found by Faddeev and .... to use non-rational potentials? Can one have more .... The freedom in the choice of the functions R(ϵ),I(ϵ) may then be used to satisfy the ...
Regularised integrals, sums and traces an analytic point of view
Paycha, Sylvie
2012-01-01
"Regularization techniques" is the common name for a variety of methods used to make sense of divergent series, divergent integrals, or traces of linear operators in infinite-dimensional spaces. Such methods are often indispensable in problems of number theory, geometry, quantum field theory, and other areas of mathematics and theoretical physics. However arbitrary and noncanonical they might seem at first glance, regularized sums, integrals, and traces often contain canonical concepts, and the main purpose of this book is to illustrate and explain this. This book provides a unified and self-contained mathematical treatment of various regularization techniques. The author shows how to derive regularized sums, integrals, and traces from certain canonical building blocks of the original divergent object. In the process of putting together these "building blocks", one encounters many problems and ambiguities caused by various so-called anomalies, which are investigated and explained in detail. Nevertheless, it t...
Esther Gamero-Sandemetrio
2018-01-01
Full Text Available Several yeast species, belonging to Saccharomyces and non-Saccharomyces genera, play fundamental roles during spontaneous must grape fermentation, and recent studies have shown that mixed fermentations, co-inoculated with S. cerevisiae and non-Saccharomyces strains, can improve wine organoleptic properties. During active dry yeast (ADY production, antioxidant systems play an essential role in yeast survival and vitality as both biomass propagation and dehydration cause cellular oxidative stress and negatively affect technological performance. Mechanisms for adaptation and resistance to desiccation have been described for S. cerevisiae, but no data are available on the physiology and oxidative stress response of non-Saccharomyces wine yeasts and their potential impact on ADY production. In this study we analyzed the oxidative stress response in several non-Saccharomyces yeast species by measuring the activity of reactive oxygen species (ROS scavenging enzymes, e.g., catalase and glutathione reductase, accumulation of protective metabolites, e.g., trehalose and reduced glutathione (GSH, and lipid and protein oxidation levels. Our data suggest that non-canonical regulation of glutathione and trehalose biosynthesis could cause poor fermentative performance after ADY production, as it corroborates the corrective effect of antioxidant treatments, during biomass propagation, with both pure chemicals and food-grade argan oil.
Makarova, Alena V; Ignatov, Artem; Miropolskaya, Nataliya; Kulbachinskiy, Andrey
2014-10-01
Human DNA polymerase iota (Pol ι) is a Y-family polymerase that can bypass various DNA lesions but possesses very low fidelity of DNA synthesis in vitro. Structural analysis of Pol ι revealed a narrow active site that promotes noncanonical base-pairing during catalysis. To better understand the structure-function relationships in the active site of Pol ι we investigated substitutions of individual amino acid residues in its fingers domain that contact either the templating or the incoming nucleotide. Two of the substitutions, Y39A and Q59A, significantly decreased the catalytic activity but improved the fidelity of Pol ι. Surprisingly, in the presence of Mn(2+) ions, the wild-type and mutant Pol ι variants efficiently incorporated nucleotides opposite template purines containing modifications that disrupted either Hoogsteen or Watson-Crick base-pairing, suggesting that Pol ι may use various types of interactions during nucleotide addition. In contrast, in Mg(2+) reactions, wild-type Pol ι was dependent on Hoogsteen base-pairing, the Y39A mutant was essentially inactive, and the Q59A mutant promoted Watson-Crick interactions with template purines. The results suggest that Pol ι utilizes distinct mechanisms of nucleotide incorporation depending on the metal cofactor and reveal important roles of specific residues from the fingers domain in base-pairing and catalysis. Copyright © 2014 Elsevier B.V. All rights reserved.
Singh-Blom, Amrita; Hughes, Randall A; Ellington, Andrew D
2014-05-20
Residue-specific incorporation of non-canonical amino acids into proteins is usually performed in vivo using amino acid auxotrophic strains and replacing the natural amino acid with an unnatural amino acid analog. Herein, we present an efficient amino acid depleted cell-free protein synthesis system that can be used to study residue-specific replacement of a natural amino acid by an unnatural amino acid analog. This system combines a simple methodology and high protein expression titers with a high-efficiency analog substitution into a target protein. To demonstrate the productivity and efficacy of a cell-free synthesis system for residue-specific incorporation of unnatural amino acids in vitro, we use this system to show that 5-fluorotryptophan and 6-fluorotryptophan substituted streptavidin retain the ability to bind biotin despite protein-wide replacement of a natural amino acid for the amino acid analog. We envisage this amino acid depleted cell-free synthesis system being an economical and convenient format for the high-throughput screening of a myriad of amino acid analogs with a variety of protein targets for the study and functional characterization of proteins substituted with unnatural amino acids when compared to the currently employed in vivo methodologies. Copyright © 2014 Elsevier B.V. All rights reserved.
Hirokazu Nakatsumi
2017-11-01
Full Text Available C-C chemokine ligand 2 (CCL2 plays pivotal roles in tumor formation, progression, and metastasis. Although CCL2 expression has been found to be dependent on the nuclear factor (NF-κB signaling pathway, the regulation of CCL2 production in tumor cells has remained unclear. We have identified a noncanonical pathway for regulation of CCL2 production that is mediated by mammalian target of rapamycin complex 1 (mTORC1 but independent of NF-κB. Multiple phosphoproteomics approaches identified the transcription factor forkhead box K1 (FOXK1 as a downstream target of mTORC1. Activation of mTORC1 induces dephosphorylation of FOXK1, resulting in transactivation of the CCL2 gene. Inhibition of the mTORC1-FOXK1 axis attenuated insulin-induced CCL2 production as well as the accumulation of tumor-associated monocytes-macrophages and tumor progression in mice. Our results suggest that FOXK1 directly links mTORC1 signaling and CCL2 expression in a manner independent of NF-κB and that CCL2 produced by this pathway contributes to tumor progression.
Yue Xu
2012-12-01
Full Text Available Elimination of aberrantly folded polypeptides from the endoplasmic reticulum (ER by the ER-associated degradation (ERAD system promotes cell survival under stress conditions. This quality control mechanism requires movement of misfolded proteins across the ER membrane for targeting to the cytosolic proteasome, a process facilitated by a “holdase” complex, consisting of Bag6 and the cofactors Ubl4A and Trc35. This multiprotein complex also participates in several other protein quality control processes. Here, we report SGTA as a component of the Bag6 system, which cooperates with Bag6 to channel dislocated ERAD substrates that are prone to aggregation. Using nuclear magnetic resonance spectroscopy and biochemical assays, we demonstrate that SGTA contains a noncanonical ubiquitin-like-binding domain that interacts specifically with an unconventional ubiquitin-like protein/domain in Ubl4A at least in part via electrostatics. This interaction helps recruit SGTA to Bag6, enhances substrate loading to Bag6, and thus prevents the formation of nondegradable protein aggregates in ERAD.
Staquicini, Fernanda I.; Ozawa, Michael G.; Moya, Catherine A.; Driessen, Wouter H.P.; Barbu, E. Magda; Nishimori, Hiroyuki; Soghomonyan, Suren; Flores, Leo G.; Liang, Xiaowen; Paolillo, Vincenzo; Alauddin, Mian M.; Basilion, James P.; Furnari, Frank B.; Bogler, Oliver; Lang, Frederick F.; Aldape, Kenneth D.; Fuller, Gregory N.; Höök, Magnus; Gelovani, Juri G.; Sidman, Richard L.; Cavenee, Webster K.; Pasqualini, Renata; Arap, Wadih
2010-01-01
The management of CNS tumors is limited by the blood-brain barrier (BBB), a vascular interface that restricts the passage of most molecules from the blood into the brain. Here we show that phage particles targeted with certain ligand motifs selected in vivo from a combinatorial peptide library can cross the BBB under normal and pathological conditions. Specifically, we demonstrated that phage clones displaying an iron-mimic peptide were able to target a protein complex of transferrin and transferrin receptor (TfR) through a non-canonical allosteric binding mechanism and that this functional protein complex mediated transport of the corresponding viral particles into the normal mouse brain. We also showed that, in an orthotopic mouse model of human glioblastoma, a combination of TfR overexpression plus extended vascular permeability and ligand retention resulted in remarkable brain tumor targeting of chimeric adeno-associated virus/phage particles displaying the iron-mimic peptide and carrying a gene of interest. As a proof of concept, we delivered the HSV thymidine kinase gene for molecular-genetic imaging and targeted therapy of intracranial xenografted tumors. Finally, we established that these experimental findings might be clinically relevant by determining through human tissue microarrays that many primary astrocytic tumors strongly express TfR. Together, our combinatorial selection system and results may provide a translational avenue for the targeted detection and treatment of brain tumors. PMID:21183793
Vincent van den Boom
2016-01-01
Full Text Available Polycomb proteins are classical regulators of stem cell self-renewal and cell lineage commitment and are frequently deregulated in cancer. Here, we find that the non-canonical PRC1.1 complex, as identified by mass-spectrometry-based proteomics, is critically important for human leukemic stem cells. Downmodulation of PRC1.1 complex members, like the DNA-binding subunit KDM2B, strongly reduces cell proliferation in vitro and delays or even abrogates leukemogenesis in vivo in humanized xenograft models. PRC1.1 components are significantly overexpressed in primary AML CD34+ cells. Besides a set of genes that is targeted by PRC1 and PRC2, ChIP-seq studies show that PRC1.1 also binds a distinct set of genes that are devoid of H3K27me3, suggesting a gene-regulatory role independent of PRC2. This set encompasses genes involved in metabolism, which have transcriptionally active chromatin profiles. These data indicate that PRC1.1 controls specific genes involved in unique cell biological processes required for leukemic cell viability.
Kalai Selvi, Sivalingam; Vinoth, Amirthalingam; Varadharajan, Thiyagarajan; Weng, Ching Feng; Vijaya Padma, Viswanadha
2017-05-01
Combination of dietary components with chemotherapy drugs is an emerging new strategy for cancer therapy to increase antitumor responses. Neferine, major bisbenzylisoquinoline alkaloid isolated from the seed embryo of Nelumbo nucifera (Lotus). In the present study, we investigated the efficacy of the combinatorial regimen of neferine and cisplatin compared to cisplatin high dose in human lung adenocarcinoma (A549) cells. Co-treatment with neferine enhanced cisplatin-induced autophagy in A549 cells was accompanied by Acidic vesicular accumulation (AVO), enhanced generation of reactive oxygen species (ROS) and depletion of intracellular glutathione (GSH), down regulation of PI3K/AKT/mTOR pathway, conversion of LC3B-I to LC3B-II. This enhanced autophagy developed via a non-canonical mechanism that did not require Beclin-1, PI3KCIII. In conclusion, these results suggest that neferine enhances cisplatin -induced autophagic cancer cell death through downregulation of PI3K/Akt/mTOR signaling pro-survival pathway and ROS- mediated Beclin-1 and PI3K CIII independent autophagy in human lung adenocarcinoma (A549 cells). Copyright © 2017 Elsevier Ltd. All rights reserved.
Wu, Tongbo; Yang, Yufei; Chen, Wei; Wang, Jiayu; Yang, Ziyu; Wang, Shenlin; Xiao, Xianjin; Li, Mengyuan; Zhao, Meiping
2018-04-06
Lambda exonuclease (λ exo) plays an important role in the resection of DNA ends for DNA repair. Currently, it is also a widely used enzymatic tool in genetic engineering, DNA-binding protein mapping, nanopore sequencing and biosensing. Herein, we disclose two noncanonical properties of this enzyme and suggest a previously undescribed hydrophobic interaction model between λ exo and DNA substrates. We demonstrate that the length of the free portion of the substrate strand in the dsDNA plays an essential role in the initiation of digestion reactions by λ exo. A dsDNA with a 5' non-phosphorylated, two-nucleotide-protruding end can be digested by λ exo with very high efficiency. Moreover, we show that when a conjugated structure is covalently attached to an internal base of the dsDNA, the presence of a single mismatched base pair at the 5' side of the modified base may significantly accelerate the process of digestion by λ exo. A detailed comparison study revealed additional π-π stacking interactions between the attached label and the amino acid residues of the enzyme. These new findings not only broaden our knowledge of the enzyme but will also be very useful for research on DNA repair and in vitro processing of nucleic acids.
Yang, Yufei; Chen, Wei; Wang, Jiayu; Yang, Ziyu; Wang, Shenlin; Xiao, Xianjin; Li, Mengyuan
2018-01-01
Abstract Lambda exonuclease (λ exo) plays an important role in the resection of DNA ends for DNA repair. Currently, it is also a widely used enzymatic tool in genetic engineering, DNA-binding protein mapping, nanopore sequencing and biosensing. Herein, we disclose two noncanonical properties of this enzyme and suggest a previously undescribed hydrophobic interaction model between λ exo and DNA substrates. We demonstrate that the length of the free portion of the substrate strand in the dsDNA plays an essential role in the initiation of digestion reactions by λ exo. A dsDNA with a 5′ non-phosphorylated, two-nucleotide-protruding end can be digested by λ exo with very high efficiency. Moreover, we show that when a conjugated structure is covalently attached to an internal base of the dsDNA, the presence of a single mismatched base pair at the 5′ side of the modified base may significantly accelerate the process of digestion by λ exo. A detailed comparison study revealed additional π–π stacking interactions between the attached label and the amino acid residues of the enzyme. These new findings not only broaden our knowledge of the enzyme but will also be very useful for research on DNA repair and in vitro processing of nucleic acids. PMID:29490081
Differential Galois theory and non-integrability of planar polynomial vector fields
Acosta-Humánez, Primitivo B.; Lázaro, J. Tomás; Morales-Ruiz, Juan J.; Pantazi, Chara
2018-06-01
We study a necessary condition for the integrability of the polynomials vector fields in the plane by means of the differential Galois Theory. More concretely, by means of the variational equations around a particular solution it is obtained a necessary condition for the existence of a rational first integral. The method is systematic starting with the first order variational equation. We illustrate this result with several families of examples. A key point is to check whether a suitable primitive is elementary or not. Using a theorem by Liouville, the problem is equivalent to the existence of a rational solution of a certain first order linear equation, the Risch equation. This is a classical problem studied by Risch in 1969, and the solution is given by the "Risch algorithm". In this way we point out the connection of the non integrability with some higher transcendent functions, like the error function.
Plegaria, Jefferson S. [MSU-DOE; Sutter, Markus [MSU-DOE; Molecular; Ferlez, Bryan [MSU-DOE; Aussignargues, Clément [MSU-DOE; Niklas, Jens [Solar; Poluektov, Oleg G. [Solar; Fromwiller, Ciara [MSU-DOE; TerAvest, Michaela [Department; amp, Molecular Biology, Michigan State University, East; Utschig, Lisa M. [Solar; Tiede, David M. [Solar; Kerfeld, Cheryl A. [MSU-DOE; Molecular; Department; amp, Molecular Biology, Michigan State University, East; Berkeley Synthetic Biology Institute, Berkeley, California 94720, United States
2017-09-21
Bacterial microcompartments (BMCs) are proteinaceous organelles that encapsulate enzymes involved in CO2 fixation (carboxysomes). or carbon catabolism (metabolosomes). Metabolosomes share a common core of enzymes and a distinct signature enzyme for substrate degradation that defines the function of the BMC (e,g., propanediol or ethanolamine utilization BMCs, or glycyl-radical enzyme microcompartments). Loci encoding metabolosomes also typically contain genes for proteins that support organelle function, such as regulation, transport of substrate, and cofactor (e.g., vitamin B-12) synthesis and recycling. Flavoproteins are frequently among these ancillary gene products, suggesting that these redox active proteins play an undetermined function in many metabolosomes. Here, we report the first characterization of a BMC-associated flavodoxin (Fld1C), a small flavoprotein, derived from the noncanonical 1,2-propanediol utilization BMC locus (PDU1C) of Lactobacillus reuteri. The 2.0 angstrom X-ray structure of Fld1C displays the alpha/beta flavodoxin fold, which noncovalently binds a single flavin mononucleotide molecule. Fld1C is a short-chain flavodoxin with redox potentials of -240 +/- 3 mV oxidized/semiquinone and -344 +/- 1 mV semiquinone/hydroquinone versus the standard hydrogen electrode at pH 7.5. It can participate in an electron transfer reaction with a photoreductant to form a stable semiquinone species. Collectively, our structural and functional results suggest that PDU1C BMCs encapsulate Fld1C to store and transfer electrons for the reactivation and/or recycling of the B-12 cofactor utilized by the signature enzyme.
Ting Wei
Full Text Available The NTB-VPg polyprotein from tomato ringspot virus is an integral membrane replication protein associated with endoplasmic reticulum membranes. A signal peptidase (SPase cleavage was previously detected in the C-terminal region of NTB-VPg downstream of a 14 amino acid (aa-long hydrophobic region (termed TM2. However, the exact location of the cleavage site was not determined. Using in vitro translation assays, we show that the SPase cleavage site is conserved in the NTB-VPg protein from various ToRSV isolates, although the rate of cleavage varies from one isolate to another. Systematic site-directed mutagenesis of the NTB-VPg SPase cleavage sites of two ToRSV isolates allowed the identification of sequences that affect cleavage efficiency. We also present evidence that SPase cleavage in the ToRSV-Rasp2 isolate occurs within a GAAGG sequence likely after the AAG (GAAG/G. Mutation of a downstream MAAV sequence to AAAV resulted in SPase cleavage at both the natural GAAG/G and the mutated AAA/V sequences. Given that there is a distance of seven aa between the two cleavage sites, this indicates that there is flexibility in the positioning of the cleavage sites relative to the inner surface of the membrane and the SPase active site. SPase cleavage sites are typically located 3-7 aa downstream of the hydrophobic region. However, the NTB-VPg GAAG/G cleavage site is located 17 aa downstream of the TM2 hydrophobic region, highlighting unusual features of the NTB-VPg SPase cleavage site. A putative 11 aa-long amphipathic helix was identified immediately downstream of the TM2 region and five aa upstream of the GAAG/G cleavage site. Based on these results, we present an updated topology model in which the hydrophobic and amphipathic domains form a long tilted helix or a bent helix in the membrane lipid bilayer, with the downstream cleavage site(s oriented parallel to the membrane inner surface.
On the algebra of deformed differential operators, and induced integrable Toda field theory
Hssaini, M.; Kessabi, M.; Maroufi, B.; Sedra, M.B.
2000-07-01
We build in this paper the algebra of q-deformed pseudo-differential operators shown to be an essential step towards setting a q-deformed integrability program. In fact, using the results of this q-deformed algebra, we derive the q-analogues of the generalised KdV hierarchy. We focus in particular the first leading orders of this q-deformed hierarchy namely the q-KdV and q-Boussinesq integrable systems. We also present the q-generalisation of the conformal transformations of the currents u n , n ≥ 2 and discuss the primary condition of the fields w n , n ≥ 2 by using the Volterra gauge group transformations for the q-covariant Lax operators. An induced su(n)-Toda(su(2)-Liouville) field theory construction is discussed and other important features are presented. (author)
Demirchian, Hovhannes; Nersessian, Armen; Sadeghian, Saeedeh; Sheikh-Jabbari, M. M.
2018-05-01
We investigate dynamics of probe particles moving in the near-horizon limit of extremal Myers-Perry black holes in arbitrary dimensions. Employing ellipsoidal coordinates we show that this problem is integrable and separable, extending the results of the odd dimensional case discussed by Hakobyan et al. [Phys. Lett. B 772, 586 (2017)., 10.1016/j.physletb.2017.07.028]. We find the general solution of the Hamilton-Jacobi equations for these systems and present explicit expressions for the Liouville integrals and discuss Killing tensors and the associated constants of motion. We analyze special cases of the background near-horizon geometry were the system possesses more constants of motion and is hence superintegrable. Finally, we consider a near-horizon extremal vanishing horizon case which happens for Myers-Perry black holes in odd dimensions and show that geodesic equations on this geometry are also separable and work out its integrals of motion.
A non-canonical Flt3ITD/NF-κB signaling pathway represses DAPK1 in acute myeloid leukemia (AML)
Shanmugam, Rajasubramaniam; Sayar, Hamid; Suvannasankha, Attaya; Goswami, Chirayu; Li, Lang; Gupta, Sushil; Cardoso, Angelo A.; Baghdadi, Tareq Al; Sargent, Katie J.; Cripe, Larry D.; Kalvakolanu, Dhananjaya V.; Boswell, H. Scott
2014-01-01
Purpose DAPK1, a tumor suppressor, is a rate-limiting effector in an ER stress-dependent apoptotic pathway. Its expression is epigenetically suppressed in several tumors. A mechanistic basis for epigenetic/transcriptional repression of DAPK1 was investigated in certain forms of AML with poor prognosis, which lacked ER stress-induced apoptosis. Experimental Design Heterogeneous primary AMLs were screened to identify a subgroup with Flt3ITD in which repression of DAPK1, among NF-κB- and c- jun-responsive genes, was studied. RNAi knockdown studies were performed in Flt3ITD+ve cell line, MV-4-11, to establish genetic epistasis in the pathway Flt3ITD-TAK1-DAPK1 repression, and chromatin immunoprecipitations were performed to identify proximate effector proteins, including TAK1-activated p52NF-κB, at the DAPK1 locus. Results AMLs characterized by normal karyotype with Flt3ITD were found to have 10-100-fold lower DAPK1 transcripts normalized to the expression of c-jun, a transcriptional activator of DAPK1, as compared to a heterogeneous cytogenetic category. Meis1, a c-jun-responsive adverse AML prognostic gene signature was also measured as control. These Flt3ITD+ve AMLs over-express relB, a transcriptional repressor, which forms active heterodimers with p52NF-κB. Chromatin immunoprecipitation assays identified p52NF-κB binding to the DAPK1 promoter along with HDAC2 and HDAC6 in the Flt3ITD+ve human AML cell line MV-4-11. Knockdown of p52NF-κB or its upstream regulator, NIK, de-repressed DAPK1. DAPK1-repressed primary Flt3ITD+ve AMLs had selective nuclear activation of p52NF-κB. Conclusions Flt3ITD promotes a non-canonical pathway via TAK1 and p52NF-κB to suppress DAPK1 in association with HDACs, which explains DAPK1 repression in Flt3ITD+ve AML. PMID:22096027
Ishimoto, Hiroshi; Wang, Zhe; Rao, Yi; Wu, Chun-Fang; Kitamoto, Toshihiro
2013-01-01
The biological actions of steroid hormones are mediated primarily by their cognate nuclear receptors, which serve as steroid-dependent transcription factors. However, steroids can also execute their functions by modulating intracellular signaling cascades rapidly and independently of transcriptional regulation. Despite the potential significance of such "non-genomic" steroid actions, their biological roles and the underlying molecular mechanisms are not well understood, particularly with regard to their effects on behavioral regulation. The major steroid hormone in the fruit fly Drosophila is 20-hydroxy-ecdysone (20E), which plays a variety of pivotal roles during development via the nuclear ecdysone receptors. Here we report that DopEcR, a G-protein coupled receptor for ecdysteroids, is involved in activity- and experience-dependent plasticity of the adult central nervous system. Remarkably, a courtship memory defect in rutabaga (Ca²⁺/calmodulin-responsive adenylate cyclase) mutants was rescued by DopEcR overexpression or acute 20E feeding, whereas a memory defect in dunce (cAMP-specific phosphodiestrase) mutants was counteracted when a loss-of-function DopEcR mutation was introduced. A memory defect caused by suppressing dopamine synthesis was also restored through enhanced DopEcR-mediated ecdysone signaling, and rescue and phenocopy experiments revealed that the mushroom body (MB)--a brain region central to learning and memory in Drosophila--is critical for the DopEcR-dependent processing of courtship memory. Consistent with this finding, acute 20E feeding induced a rapid, DopEcR-dependent increase in cAMP levels in the MB. Our multidisciplinary approach demonstrates that DopEcR mediates the non-canonical actions of 20E and rapidly modulates adult conditioned behavior through cAMP signaling, which is universally important for neural plasticity. This study provides novel insights into non-genomic actions of steroids, and opens a new avenue for genetic
Hiroshi Ishimoto
Full Text Available The biological actions of steroid hormones are mediated primarily by their cognate nuclear receptors, which serve as steroid-dependent transcription factors. However, steroids can also execute their functions by modulating intracellular signaling cascades rapidly and independently of transcriptional regulation. Despite the potential significance of such "non-genomic" steroid actions, their biological roles and the underlying molecular mechanisms are not well understood, particularly with regard to their effects on behavioral regulation. The major steroid hormone in the fruit fly Drosophila is 20-hydroxy-ecdysone (20E, which plays a variety of pivotal roles during development via the nuclear ecdysone receptors. Here we report that DopEcR, a G-protein coupled receptor for ecdysteroids, is involved in activity- and experience-dependent plasticity of the adult central nervous system. Remarkably, a courtship memory defect in rutabaga (Ca²⁺/calmodulin-responsive adenylate cyclase mutants was rescued by DopEcR overexpression or acute 20E feeding, whereas a memory defect in dunce (cAMP-specific phosphodiestrase mutants was counteracted when a loss-of-function DopEcR mutation was introduced. A memory defect caused by suppressing dopamine synthesis was also restored through enhanced DopEcR-mediated ecdysone signaling, and rescue and phenocopy experiments revealed that the mushroom body (MB--a brain region central to learning and memory in Drosophila--is critical for the DopEcR-dependent processing of courtship memory. Consistent with this finding, acute 20E feeding induced a rapid, DopEcR-dependent increase in cAMP levels in the MB. Our multidisciplinary approach demonstrates that DopEcR mediates the non-canonical actions of 20E and rapidly modulates adult conditioned behavior through cAMP signaling, which is universally important for neural plasticity. This study provides novel insights into non-genomic actions of steroids, and opens a new avenue for
Katoh, Masaru
2017-01-01
Cancer stem cells (CSCs), which have the potential for self-renewal, differentiation and de-differentiation, undergo epigenetic, epithelial-mesenchymal, immunological and metabolic reprogramming to adapt to the tumor microenvironment and survive host defense or therapeutic insults. Intra-tumor heterogeneity and cancer-cell plasticity give rise to therapeutic resistance and recurrence through clonal replacement and reactivation of dormant CSCs, respectively. WNT signaling cascades cross-talk with the FGF, Notch, Hedgehog and TGFβ/BMP signaling cascades and regulate expression of functional CSC markers, such as CD44, CD133 (PROM1), EPCAM and LGR5 (GPR49). Aberrant canonical and non-canonical WNT signaling in human malignancies, including breast, colorectal, gastric, lung, ovary, pancreatic, prostate and uterine cancers, leukemia and melanoma, are involved in CSC survival, bulk-tumor expansion and invasion/metastasis. WNT signaling-targeted therapeutics, such as anti-FZD1/2/5/7/8 monoclonal antibody (mAb) (vantictumab), anti-LGR5 antibody-drug conjugate (ADC) (mAb-mc-vc-PAB-MMAE), anti-PTK7 ADC (PF-06647020), anti-ROR1 mAb (cirmtuzumab), anti-RSPO3 mAb (rosmantuzumab), small-molecule porcupine inhibitors (ETC-159, WNT-C59 and WNT974), tankyrase inhibitors (AZ1366, G007-LK, NVP-TNKS656 and XAV939) and β-catenin inhibitors (BC2059, CWP232228, ICG-001 and PRI-724), are in clinical trials or preclinical studies for the treatment of patients with WNT-driven cancers. WNT signaling-targeted therapeutics are applicable for combination therapy with BCR-ABL, EGFR, FLT3, KIT or RET inhibitors to treat a subset of tyrosine kinase-driven cancers because WNT and tyrosine kinase signaling cascades converge to β-catenin for the maintenance and expansion of CSCs. WNT signaling-targeted therapeutics might also be applicable for combination therapy with immune checkpoint blockers, such as atezolizumab, avelumab, durvalumab, ipilimumab, nivolumab and pembrolizumab, to treat cancers
James, Frederick D; Hietala, Katie A; Eldar, Dganit; Guess, Tiffany E; Cone, Cecil; Mundell, Nathan A; Mundall, Nathan; Barnett, Joey V; Raju, Ramaswamy
2007-12-01
Sindbis virus (SIN) is a mosquito-transmitted animal RNA virus. We previously reported that SIN genomes lacking a canonical 19 nt 3'CSE undergo novel repair processes in BHK cells to generate a library of stable atypical SIN genomes with non-canonical 3'A/U-rich elements (NC3AREs) adjacent to the 3' poly(A) tail [1]. To determine the stability and evolutionary pressures on the SIN genomes with NC3AREs to regain a 3'CSE, five representative SIN isolates and a wild type SIN were tested in newborn mice. The key findings of this study are: (a) all six SIN isolates, including those that have extensive NC3AREs in the 3'NTRs, replicate well and produce high titer viremia in newborn mice; (b) 7-9 successive passages of these isolates in newborn mice produced comparable levels of viremia; (c) while all isolates produced only small-sized plaques during primary infection in animals, both small- and large-sized plaques were generated in all other passages; (d) polymerase stuttering occurs on select 3' oligo(U) motifs to add more U residues within the NC3AREs; (e) the S3-8 isolate with an internal UAUUU motif in the 3'poly(A) tail maintains this element even after 9 passages in animals; (f) despite differences in 3'NTRs and variable tissue distribution, all SIN isolates appear to produce similar tissue pathology in infected animals. Competition experiments with wt SIN and atypical SIN isolates in BHK cells show dominance of wt SIN. As shown for BHK cells in culture, the 3'CSE of the SIN genome is not required for virus replication and genome stability in live animals. Since the NC3AREs of atypical SIN genomes are not specific to SIN replicases, alternate RNA motifs of alphavirus genome must confer specificity in template selection. These studies fulfill the need to confirm the long-term viability of atypical SIN genomes in newborn mice and offer a basis for exploring the use of atypical SIN genomes in biotechnology.
Jumarie, Guy
2006-01-01
The (complex-valued) Brownian motion of order n is defined as the limit of a random walk on the complex roots of the unity. Real-valued fractional noises are obtained as fractional derivatives of the Gaussian white noise (or order two). Here one combines these two approaches and one considers the new class of fractional noises obtained as fractional derivative of the complex-valued Brownian motion of order n. The key of the approach is the relation between differential and fractional differential provided by the fractional Taylor's series of analytic function f(z+h)=E α (h α D z α ).f(z), where E α is the Mittag-Leffler function on the one hand, and the generalized Maruyama's notation, on the other hand. Some questions are revisited such as the definition of fractional Brownian motion as integral w.r.t. (dt) α , and the exponential growth equation driven by fractional Brownian motion, to which a new solution is proposed. As a first illustrative example of application, in mathematical finance, one proposes a new approach to the optimal management of a stochastic portfolio of fractional order via the Lagrange variational technique applied to the state moment dynamical equations. In the second example, one deals with non-random Lagrangian mechanics of fractional order. The last example proposes a new approach to fractional stochastic mechanics, and the solution so obtained gives rise to the question as to whether physical systems would not have their own internal random times
Purely geometric path integral for spin-foams
Shirazi, Atousa Chaharsough; Engle, Jonathan
2014-01-01
Spin-foams are a proposal for defining the dynamics of loop quantum gravity via path integral. In order for a path integral to be at least formally equivalent to the corresponding canonical quantization, at each point in the space of histories it is important that the integrand have not only the correct phase—a topic of recent focus in spin-foams—but also the correct modulus, usually referred to as the measure factor. The correct measure factor descends from the Liouville measure on the reduced phase space, and its calculation is a task of canonical analysis. The covariant formulation of gravity from which spin-foams are derived is the Plebanski–Holst formulation, in which the basic variables are a Lorentz connection and a Lorentz-algebra valued 2-form, called the Plebanski 2-form. However, in the final spin-foam sum, one usually sums over only spins and intertwiners, which label eigenstates of the Plebanski 2-form alone. The spin-foam sum is therefore a discretized version of a Plebanski–Holst path integral in which only the Plebanski 2-form appears, and in which the connection degrees of freedom have been integrated out. We call this a purely geometric Plebanski–Holst path integral. In prior work in which one of the authors was involved, the measure factor for the Plebanski–Holst path integral with both connection and 2-form variables was calculated. Before one discretizes this measure and incorporates it into a spin-foam sum, however, one must integrate out the connection in order to obtain the purely geometric version of the path integral. To calculate this purely geometric path integral is the principal task of the present paper, and it is done in two independent ways. Background independence of the resulting path integral is discussed in the final section, and gauge-fixing is discussed in appendix B. (paper)
Covariant path integrals on hyperbolic surfaces
Schaefer, J.
1997-01-01
DeWitt close-quote s covariant formulation of path integration [B. De Witt, open-quotes Dynamical theory in curved spaces. I. A review of the classical and quantum action principles,close quotes Rev. Mod. Phys. 29, 377 endash 397 (1957)] has two practical advantages over the traditional methods of open-quotes lattice approximations;close quotes there is no ordering problem, and classical symmetries are manifestly preserved at the quantum level. Applying the spectral theorem for unbounded self-adjoint operators, we provide a rigorous proof of the convergence of certain path integrals on Riemann surfaces of constant curvature -1. The Pauli endash DeWitt curvature correction term arises, as in DeWitt close-quote s work. Introducing a Fuchsian group Γ of the first kind, and a continuous, bounded, Γ-automorphic potential V, we obtain a Feynman endash Kac formula for the automorphic Schroedinger equation on the Riemann surface Γ backslash H. We analyze the Wick rotation and prove the strong convergence of the so-called Feynman maps [K. D. Elworthy, Path Integration on Manifolds, Mathematical Aspects of Superspace, edited by Seifert, Clarke, and Rosenblum (Reidel, Boston, 1983), pp. 47 endash 90] on a dense set of states. Finally, we give a new proof of some results in C. Grosche and F. Steiner, open-quotes The path integral on the Poincare upper half plane and for Liouville quantum mechanics,close quotes Phys. Lett. A 123, 319 endash 328 (1987). copyright 1997 American Institute of Physics
Some integrable maps and their Hirota bilinear forms
Hone, A. N. W.; Kouloukas, T. E.; Quispel, G. R. W.
2018-01-01
We introduce a two-parameter family of birational maps, which reduces to a family previously found by Demskoi, Tran, van der Kamp and Quispel (DTKQ) when one of the parameters is set to zero. The study of the singularity confinement pattern for these maps leads to the introduction of a tau function satisfying a homogeneous recurrence which has the Laurent property, and the tropical (or ultradiscrete) analogue of this homogeneous recurrence confirms the quadratic degree growth found empirically by Demskoi et al. We prove that the tau function also satisfies two different bilinear equations, each of which is a reduction of the Hirota-Miwa equation (also known as the discrete KP equation, or the octahedron recurrence). Furthermore, these bilinear equations are related to reductions of particular two-dimensional integrable lattice equations, of discrete KdV or discrete Toda type. These connections, as well as the cluster algebra structure of the bilinear equations, allow a direct construction of Poisson brackets, Lax pairs and first integrals for the birational maps. As a consequence of the latter results, we show how each member of the family can be lifted to a system that is integrable in the Liouville sense, clarifying observations made previously in the original DTKQ case.
Integral or integrated marketing
Davčik Nebojša
2006-01-01
Full Text Available Marketing theorists and experts try to develop business efficient organization and to get marketing performance at higher, business integrated level since its earliest beginnings. The core issue in this paperwork is the dialectic and practical approach dilemma should we develop integrated or integral marketing approach in the organization. The presented company cases as well as dialectic and functional explanations of this dilemma clearly shows that integrated marketing is narrower approach than integral marketing if we take as focal point new, unique and completed entity. In the integration the essence is in getting different parts together, which do not have to make necessary the new entity. The key elements in the definition of the integral marketing are necessity and holistic, e.g. necessity to develop new, holistic entity.
Liouville supersymmetrical equation for a quantum case
Leznov, A.N.; Khrushev, V.V.
1982-01-01
The relation between coupling constants of interacting nonlinear scalar and spinor fields was established which leads to finite series of perturbation theory for the dynamical variable esup(-phi). In the classical limit h/2π→0 the system under consideration turns out to be described by supersymmetric Luiville equation
Symmetry-adapted Liouville space. Pt. 8
Temme, F.P.
1990-01-01
A generalized hierarchy over lexical weight-sets is shown to provide significant insight into the structure of identical higher I i spin clusters under the S n /SO(3) dual groups. The use of combinatorial S n word-lengths allows one to derive the dual irreps directly from the combinatorics inherent in the adapted spin space. These advantages arise from the intimate connections between the scalar invariants of Cayley algebra over a field and their lexical combinatorics over vertical strokeI, Σ i M i , ()> space, which itself is a consequence of the S n -group representational algebra. By taking the highest SO(3) weight as the lexical origin, the calculations become recursive over all further expansions of the spin space, i.e., arising from an enhanced magnitude for the component nuclear spins, I i . The method over Hilbert space for spin clusters of I i ≤ 9/2 is more direct than those associated with unitary group algebras; in addition, the cogent beauty of combinatorial concepts derived from Cayley algebra deserves wider recognition in the physical sciences. (orig.)
Integral-preserving integrators
McLaren, D I; Quispel, G R W
2004-01-01
Ordinary differential equations having a first integral may be solved numerically using one of several methods, with the integral preserved to machine accuracy. One such method is the discrete gradient method. It is shown here that the order of the method can be bootstrapped repeatedly to higher orders of accuracy. The method is illustrated using the Henon-Heiles system. (letter to the editor)
Symplectic integrators with adaptive time steps
Richardson, A. S.; Finn, J. M.
2012-01-01
In recent decades, there have been many attempts to construct symplectic integrators with variable time steps, with rather disappointing results. In this paper, we identify the causes for this lack of performance, and find that they fall into two categories. In the first, the time step is considered a function of time alone, Δ = Δ(t). In this case, backward error analysis shows that while the algorithms remain symplectic, parametric instabilities may arise because of resonance between oscillations of Δ(t) and the orbital motion. In the second category the time step is a function of phase space variables Δ = Δ(q, p). In this case, the system of equations to be solved is analyzed by introducing a new time variable τ with dt = Δ(q, p) dτ. The transformed equations are no longer in Hamiltonian form, and thus do not benefit from integration methods which would be symplectic for Hamiltonian systems. We analyze two methods for integrating the transformed equations which do, however, preserve the structure of the original equations. The first is an extended phase space method, which has been successfully used in previous studies of adaptive time step symplectic integrators. The second, novel, method is based on a non-canonical mixed-variable generating function. Numerical trials for both of these methods show good results, without parametric instabilities or spurious growth or damping. It is then shown how to adapt the time step to an error estimate found by backward error analysis, in order to optimize the time-stepping scheme. Numerical results are obtained using this formulation and compared with other time-stepping schemes for the extended phase space symplectic method.
Zhang, Yu-Ping; Yu, Lan; Wei, Guang-Mei
2018-02-01
Under investigation with symbolic computation in this paper, is a variable-coefficient Sasa-Satsuma equation (SSE) which can describe the ultra short pulses in optical fiber communications and propagation of deep ocean waves. By virtue of the extended Ablowitz-Kaup-Newell-Segur system, Lax pair for the model is directly constructed. Based on the obtained Lax pair, an auto-Bäcklund transformation is provided, then the explicit one-soliton solution is obtained. Meanwhile, an infinite number of conservation laws in explicit recursion forms are derived to indicate its integrability in the Liouville sense. Furthermore, exact explicit rogue wave (RW) solution is presented by use of a Darboux transformation. In addition to the double-peak structure and an analog of the Peregrine soliton, the RW can exhibit graphically an intriguing twisted rogue-wave (TRW) pair that involve four well-defined zero-amplitude points.
On the path integral representation of the Wigner function and the Barker–Murray ansatz
Sels, Dries; Brosens, Fons; Magnus, Wim
2012-01-01
The propagator of the Wigner function is constructed from the Wigner–Liouville equation as a phase space path integral over a new effective Lagrangian. In contrast to a paper by Barker and Murray (1983) , we show that the path integral can in general not be written as a linear superposition of classical phase space trajectories over a family of non-local forces. Instead, we adopt a saddle point expansion to show that the semiclassical Wigner function is a linear superposition of classical solutions for a different set of non-local time dependent forces. As shown by a simple example the specific form of the path integral makes the formulation ideal for Monte Carlo simulation. -- Highlights: ► We derive the quantum mechanical propagator of the Wigner function in the path integral representation. ► We show that the Barker–Murray ansatz is incomplete, explain the error and provide an alternative. ► An example of a Monte Carlo simulation of the semiclassical path integral is included.
Epidaurus: aggregation and integration analysis of prostate cancer epigenome.
Wang, Liguo; Huang, Haojie; Dougherty, Gregory; Zhao, Yu; Hossain, Asif; Kocher, Jean-Pierre A
2015-01-01
Integrative analyses of epigenetic data promise a deeper understanding of the epigenome. Epidaurus is a bioinformatics tool used to effectively reveal inter-dataset relevance and differences through data aggregation, integration and visualization. In this study, we demonstrated the utility of Epidaurus in validating hypotheses and generating novel biological insights. In particular, we described the use of Epidaurus to (i) integrate epigenetic data from prostate cancer cell lines to validate the activation function of EZH2 in castration-resistant prostate cancer and to (ii) study the mechanism of androgen receptor (AR) binding deregulation induced by the knockdown of FOXA1. We found that EZH2's noncanonical activation function was reaffirmed by its association with active histone markers and the lack of association with repressive markers. More importantly, we revealed that the binding of AR was selectively reprogramed to promoter regions, leading to the up-regulation of hundreds of cancer-associated genes including EGFR. The prebuilt epigenetic dataset from commonly used cell lines (LNCaP, VCaP, LNCaP-Abl, MCF7, GM12878, K562, HeLa-S3, A549, HePG2) makes Epidaurus a useful online resource for epigenetic research. As standalone software, Epidaurus is specifically designed to process user customized datasets with both efficiency and convenience. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.
An approach for obtaining integrable Hamiltonians from Poisson-commuting polynomial families
Leyvraz, F.
2017-07-01
We discuss a general approach permitting the identification of a broad class of sets of Poisson-commuting Hamiltonians, which are integrable in the sense of Liouville. It is shown that all such Hamiltonians can be solved explicitly by a separation of variables ansatz. The method leads in particular to a proof that the so-called "goldfish" Hamiltonian is maximally superintegrable and leads to an elementary identification of a full set of integrals of motion. The Hamiltonians in involution with the "goldfish" Hamiltonian are also explicitly integrated. New integrable Hamiltonians are identified, among which some have the property of being isochronous, that is, all their orbits have the same period. Finally, a peculiar structure is identified in the Poisson brackets between the elementary symmetric functions and the set of Hamiltonians commuting with the "goldfish" Hamiltonian: these can be expressed as products between elementary symmetric functions and Hamiltonians. The structure displays an invariance property with respect to one element and has both a symmetry and a closure property. The meaning of this structure is not altogether clear to the author, but it turns out to be a powerful tool.
Karamitros, Timokratis; Harrison, Ian; Piorkowska, Renata; Katzourakis, Aris; Magiorkinis, Gkikas; Mbisa, Jean Lutamyo
2016-01-01
Human herpesvirus type 1 (HHV-1) has a large double-stranded DNA genome of approximately 152 kbp that is structurally complex and GC-rich. This makes the assembly of HHV-1 whole genomes from short-read sequencing data technically challenging. To improve the assembly of HHV-1 genomes we have employed a hybrid genome assembly protocol using data from two sequencing technologies: the short-read Roche 454 and the long-read Oxford Nanopore MinION sequencers. We sequenced 18 HHV-1 cell culture-isolated clinical specimens collected from immunocompromised patients undergoing antiviral therapy. The susceptibility of the samples to several antivirals was determined by plaque reduction assay. Hybrid genome assembly resulted in a decrease in the number of contigs in 6 out of 7 samples and an increase in N(G)50 and N(G)75 of all 7 samples sequenced by both technologies. The approach also enhanced the detection of non-canonical contigs including a rearrangement between the unique (UL) and repeat (T/IRL) sequence regions of one sample that was not detectable by assembly of 454 reads alone. We detected several known and novel resistance-associated mutations in UL23 and UL30 genes. Genome-wide genetic variability ranged from genomes will be useful in determining genetic determinants of drug resistance, virulence, pathogenesis and viral evolution. The numerous, complex repeat regions of the HHV-1 genome currently remain a barrier towards this goal.
Furukawa, Masaru; Ohkawa, Yushiro; Matsuyama, Akinobu
2016-01-01
A high-accuracy numerical integration algorithm for a charged particle motion is developed. The algorithm is based on the Hamiltonian mechanics and the operator decomposition. The algorithm is made to be time-reversal symmetric, and its order of accuracy can be increased to any order by using a recurrence formula. One of the advantages is that it is an explicit method. An effective way to decompose the time evolution operator is examined; the Poisson tensor is decomposed and non-canonical variables are adopted. The algorithm is extended to a time dependent fields' case by introducing the extended phase space. Numerical tests showing the performance of the algorithm are presented. One is the pure cyclotron motion for a long time period, and the other is a charged particle motion in a rapidly oscillating field. (author)
Bratton, T.J.
1992-01-01
This article offers ideas for evaluating integrated solid waste management systems through the use of a conceptual cost overview. The topics of the article include the integrated solid waste management system; making assumptions about community characteristics, waste generation rates, waste collection responsibility, integrated system components, sizing and economic life of system facilities, system implementation schedule, facility ownership, and system administration; integrated system costs; integrated system revenues; system financing; cost projections; and making decisions
Montoya, Tatiana; Aparicio-Soto, Marina; Castejón, María Luisa; Rosillo, María Ángeles; Sánchez-Hidalgo, Marina; Begines, Paloma; Fernández-Bolaños, José G; Alarcón-de-la-Lastra, Catalina
2018-03-18
The present study was designed to investigate the anti-inflammatory effects of a new derivative of hydroxytyrosol (HTy), peracetylated hydroxytyrosol (Per-HTy), compared with its parent, HTy, on lipopolysaccharide (LPS)-stimulated murine macrophages as well as potential signaling pathways involved. In particular, we attempted to characterize the role of the inflammasome underlying Per-HTy possible anti-inflammatory effects. Isolated murine peritoneal macrophages were treated with HTy or its derivative in the presence or absence of LPS (5 μg/ml) for 18 h. Cell viability was determined using sulforhodamine B (SRB) assay. Nitric oxide (NO) production was analyzed by Griess method. Production of pro-inflammatory cytokines was evaluated by enzyme-linked immunosorbent assay (ELISA) and inducible nitric oxide synthase (iNOS) and cyclooxygenase (COX)-2, janus kinase/signal transducer and activator of transcription (JAK/STAT) pathway (STAT3), haem oxigenase 1 (HO1), nuclear factor (erythroid-derived 2)-like 2 (Nrf2) expression and mitogen-activated protein kinases (MAPKs) activation was determined by Western blot. Per-HTy significantly reduced the levels of NO and pro-inflammatory cytokines as well as both COX-2 and iNOS expressions. Furthermore, Per-HTy treatment inhibited STAT3 and increased Nrf2 and HO1 protein levels in murine macrophages exposed to LPS. In addition, Per-HTy anti-inflammatory activity was related with an inhibition of non-canonical nucleotide binding domain (NOD)-like receptor (NLRP3) inflammasome pathways by decreasing pro-inflammatory interleukin (IL)-1β and IL-18 cytokine levels as consequence of regulation of cleaved caspase-11 enzyme. These results support that this new HTy derivative may offer a new promising nutraceutical therapeutic strategy in the management of inflammatory-related pathologies. Copyright © 2018. Published by Elsevier Inc.
Coghetto Roland
2017-10-01
Full Text Available Some authors have formalized the integral in the Mizar Mathematical Library (MML. The first article in a series on the Darboux/Riemann integral was written by Noboru Endou and Artur Korniłowicz: [6]. The Lebesgue integral was formalized a little later [13] and recently the integral of Riemann-Stieltjes was introduced in the MML by Keiko Narita, Kazuhisa Nakasho and Yasunari Shidama [12].
Thomas, E. G. F.
2012-01-01
This paper deals with the theory of integration of scalar functions with respect to a measure with values in a, not necessarily locally convex, topological vector space. It focuses on the extension of such integrals from bounded measurable functions to the class of integrable functions, proving
Min Jia
2012-01-01
Full Text Available We study a model arising from porous media, electromagnetic, and signal processing of wireless communication system -tαx(t=f(t,x(t,x'(t,x”(t,…,x(n-2(t, 0
The topology of Lagrangian foliations of integrable systems with hyperelliptic Hamiltonian
Kudryavtseva, Elena A; Lepskii, Timur A
2011-01-01
We study the integrable Hamiltonian systems (C 2 ,Re(dz and dw),H=Ref(z,w)) with the additional first integral F=Imf which correspond to the complex Hamiltonian systems (C 2 ,dz and dw,f(z,w)) with a hyperelliptic Hamiltonian f(z,w)=z 2 +P n (w), n element of N. For n≥3 the system has incomplete flows on any Lagrangian leaf f -1 (a). The topology of the Lagrangian foliation of such systems in a small neighbourhood of any leaf f -1 (a) is described in terms of the number n and the combinatorial type of the leaf--the set of multiplicities of the critical points of the function f that belong to the leaf. For odd n, a complex analogue of Liouville's theorem is obtained for those systems corresponding to polynomials P n (w) with simple real roots. In particular, a set of complex canonical variables analogous to action-angle variables is constructed in a small neighbourhood of the leaf f -1 (0). Bibliography: 12 titles.
Interorganisational Integration
Lyngsø, Anne Marie; Godtfredsen, Nina Skavlan; Frølich, Anne
2016-01-01
INTRODUCTION: Despite many initiatives to improve coordination of patient pathways and intersectoral cooperation, Danish health care is still fragmented, lacking intra- and interorganisational integration. This study explores barriers to and facilitators of interorganisational integration...... at a university hospital in the Capital Region of Denmark. RESULTS AND DISCUSSION: Our results can be grouped into five influencing areas for interorganisational integration: communication/information transfer, committed leadership, patient engagement, the role and competencies of the general practitioner...... and organisational culture. Proposed solutions to barriers in each area hold the potential to improve care integration as experienced by individuals responsible for supporting and facilitating it. Barriers and facilitators to integrating care relate to clinical, professional, functional and normative integration...
Liu, Rui; Kenney, Justin W.; Manousopoulou, Antigoni; Johnston, Harvey E.; Kamei, Makoto; Woelk, Christopher H.; Xie, Jianling; Schwarzer, Michael; Proud, Christopher G.
2016-01-01
Cardiomyocytes undergo growth and remodeling in response to specific pathological or physiological conditions. In the former, myocardial growth is a risk factor for cardiac failure and faster protein synthesis is a major factor driving cardiomyocyte growth. Our goal was to quantify the rapid effects of different pro-hypertrophic stimuli on the synthesis of specific proteins in ARVC and to determine whether such effects are caused by alterations on mRNA abundance or the translation of specific mRNAs. Cardiomyocytes have very low rates of protein synthesis, posing a challenging problem in terms of studying changes in the synthesis of specific proteins, which also applies to other nondividing primary cells. To study the rates of accumulation of specific proteins in these cells, we developed an optimized version of the Quantitative Noncanonical Amino acid Tagging LC/MS proteomic method to label and selectively enrich newly synthesized proteins in these primary cells while eliminating the suppressive effects of pre-existing and highly abundant nonisotope-tagged polypeptides. Our data revealed that a classical pathologic (phenylephrine; PE) and the recently identified insulin stimulus that also contributes to the development of pathological cardiac hypertrophy (insulin), both increased the synthesis of proteins involved in, e.g. glycolysis, the Krebs cycle and beta-oxidation, and sarcomeric components. However, insulin increased synthesis of many metabolic enzymes to a greater extent than PE. Using a novel validation method, we confirmed that synthesis of selected candidates is indeed up-regulated by PE and insulin. Synthesis of all proteins studied was up-regulated by signaling through mammalian target of rapamycin complex 1 without changes in their mRNA levels, showing the key importance of translational control in the rapid effects of hypertrophic stimuli. Expression of PKM2 was up-regulated in rat hearts following TAC. This isoform possesses specific regulatory
Antill, N.
1999-01-01
This paper focuses on the trend in international energy companies towards vertical integration in the gas chain from wellhead to power generation, horizontal integration in refining and marketing businesses, and the search for larger projects with lower upstream costs. The shape of the petroleum industry in the next millennium, the creation of super-major oil companies, and the relationship between size and risk are discussed. The dynamics of vertical integration, present events and future developments are considered. (UK)
Moiseiwitsch, B L
2005-01-01
Two distinct but related approaches hold the solutions to many mathematical problems--the forms of expression known as differential and integral equations. The method employed by the integral equation approach specifically includes the boundary conditions, which confers a valuable advantage. In addition, the integral equation approach leads naturally to the solution of the problem--under suitable conditions--in the form of an infinite series.Geared toward upper-level undergraduate students, this text focuses chiefly upon linear integral equations. It begins with a straightforward account, acco
Lenau, Torben Anker
1999-01-01
A homepage on the internet with course material, lecture plan, student exercises, etc. Continuesly updated during the course Integrated Design (80402, 80403)......A homepage on the internet with course material, lecture plan, student exercises, etc. Continuesly updated during the course Integrated Design (80402, 80403)...
Axelsson, Runo
2013-01-01
Background: In Sweden, as in many other countries, there has been a succession of trends in the organisation of health care and other welfare services. These trends have had different implications for the integration of services in the health and welfare system. Aims: One aim is to discuss...... the implications of different organisational trends for the integration of health and welfare services. Another aim is to introduce a Swedish model of financial coordination as a flexible way to organise integration. Organisational trends: In the 1960’s there was an expansion of health and welfare services leading...... an increasing lack of integration in the health and welfare system. In the 2000’s, there has been a re-centralisation through mergers of hospitals, regions and state agencies. It has become clear, however, that mergers do not promote integration but rather increase the bureaucratisation of the system. Model...
Bauböck, Rainer
1995-01-01
from the Table of Contents: Migration and integration - Basic concepts and definitions; Immigration and Integration policies; The legal framework for integration; Dimension of social integration; Cultural integration; Conclusions;
Simulation of electron spin resonance spectroscopy in diverse environments: An integrated approach
Zerbetto, Mirco; Polimeno, Antonino; Barone, Vincenzo
2009-12-01
We discuss in this work a new software tool, named E-SpiReS (Electron Spin Resonance Simulations), aimed at the interpretation of dynamical properties of molecules in fluids from electron spin resonance (ESR) measurements. The code implements an integrated computational approach (ICA) for the calculation of relevant molecular properties that are needed in order to obtain spectral lines. The protocol encompasses information from atomistic level (quantum mechanical) to coarse grained level (hydrodynamical), and evaluates ESR spectra for rigid or flexible single or multi-labeled paramagnetic molecules in isotropic and ordered phases, based on a numerical solution of a stochastic Liouville equation. E-SpiReS automatically interfaces all the computational methodologies scheduled in the ICA in a way completely transparent for the user, who controls the whole calculation flow via a graphical interface. Parallelized algorithms are employed in order to allow running on calculation clusters, and a web applet Java has been developed with which it is possible to work from any operating system, avoiding the problems of recompilation. E-SpiReS has been used in the study of a number of different systems and two relevant cases are reported to underline the promising applicability of the ICA to complex systems and the importance of similar software tools in handling a laborious protocol. Program summaryProgram title: E-SpiReS Catalogue identifier: AEEM_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEEM_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GPL v2.0 No. of lines in distributed program, including test data, etc.: 311 761 No. of bytes in distributed program, including test data, etc.: 10 039 531 Distribution format: tar.gz Programming language: C (core programs) and Java (graphical interface) Computer: PC and Macintosh Operating system: Unix and Windows Has the code been vectorized or
Kozarić-Kovacić, Dragica
2008-09-01
The main purposes of the article are to present the history of integration in psychotherapy, the reasons of the development integrative approaches, and the approaches to integration in psychotherapy. Three approaches to integration in psychotherapy exist: theoretical integration, theoretical eclecticism, and common factors in different psychotherapeutic trends. In integrative psychotherapy, the basic epistemology, theory, and clinical practice are based on the phenomenology, field theory, holism, dialogue, and co-creation of dialogue in the therapeutic relationship. The main criticism is that integrative psychotherapy suffers from confusion and many unresolved controversies. It is difficult to theoretically and methodologically define the clinically applied model that is based on such a different epistemological and theoretical presumptions. Integrative psychotherapy is a synthesis of humanistic psychotherapy, object relations theory, and psychoanalytical self psychology. It focuses on the dynamics and potentials of human relationships, with a goal of changing the relations and understanding internal and external resistances. The process of integrative psychotherapy is primarily focused on the developmental-relational model and co-creation of psychotherapeutic relationship as a single interactive event, which is not unilateral, but rather a joint endeavor by both the therapist and the patient/client. The need for a relationship is an important human need and represents a process of attunement that occurs as a response to the need for a relationship, a unique interpersonal contact between two people. If this need is not met, it manifests with the different feelings and various defenses. To meet this need, we need to have another person with whom we can establish a sensitive, attuned relationship. Thus, the therapist becomes this person who tries to supplement what the person did not receive. Neuroscience can be a source of integration through different therapies. We
Integration of Chandrasekhar's integral equation
Tanaka, Tasuku
2003-01-01
We solve Chandrasekhar's integration equation for radiative transfer in the plane-parallel atmosphere by iterative integration. The primary thrust in radiative transfer has been to solve the forward problem, i.e., to evaluate the radiance, given the optical thickness and the scattering phase function. In the area of satellite remote sensing, our problem is the inverse problem: to retrieve the surface reflectance and the optical thickness of the atmosphere from the radiance measured by satellites. In order to retrieve the optical thickness and the surface reflectance from the radiance at the top-of-the atmosphere (TOA), we should express the radiance at TOA 'explicitly' in the optical thickness and the surface reflectance. Chandrasekhar formalized radiative transfer in the plane-parallel atmosphere in a simultaneous integral equation, and he obtained the second approximation. Since then no higher approximation has been reported. In this paper, we obtain the third approximation of the scattering function. We integrate functions derived from the second approximation in the integral interval from 1 to ∞ of the inverse of the cos of zenith angles. We can obtain the indefinite integral rather easily in the form of a series expansion. However, the integrals at the upper limit, ∞, are not yet known to us. We can assess the converged values of those series expansions at ∞ through calculus. For integration, we choose coupling pairs to avoid unnecessary terms in the outcome of integral and discover that the simultaneous integral equation can be deduced to the mere integral equation. Through algebraic calculation, we obtain the third approximation as a polynomial of the third degree in the atmospheric optical thickness
Evidence of non-canonical NOTCH signaling
Traustadóttir, Gunnhildur Ásta; Jensen, Charlotte H; Thomassen, Mads
2016-01-01
Dlk1(+/+) and Dlk1(-/-) mouse tissues at E16.5, we demonstrated that several NOTCH signaling pathways indeed are affected by DLK1 during tissue development, and this was supported by a lower activation of NOTCH1 protein in Dlk1(+/+) embryos. Likewise, but using a distinct Dlk1-manipulated (si...
Noncanonical Hamiltonian methods in plasma dynamics
Kaufman, A.N.
1982-01-01
A Hamiltonian approach to plasma dynamics is described. The Poisson bracket of two observables g 1 and g 2 is given by using an antisymmetric tensor J, and must satisfy the Jacobi condition. The J can be obtained by elementary tensor analysis. The evolution in time of an observable g is given in terms of the Poisson bracket and a Hamiltonian H(Z). The guiding-center description of particle motion was presented by Littlejohn. The ponderomotive drift and force, the wave-induced oscillation-center velocity, and the gyrofrequency shift are obtained. The Lie transform yields the wave-induced increment to the gyromomentum. In the coulomb model for a Vlasov system, the dynamical variable is the Vlasov distribution f(z). The Hamiltonian functional and the Poisson bracket are obtained. The coupling of f(z) to the Maxwell field appears in the Poisson bracket. The evolution equation yields the Vlasov-Maxwell system. (Kato, T.)
Chafcouloff, S.; Michel, G.; Trice, M.; Clark, G.; Cosad, C.; Forbes, K.
1995-01-01
Integrated services is the name given to several services grouped together under a single contract. Four key factors determine the success of integrated services projects: teamwork, common objectives, technology, and shared benefits. For oil companies, integration means smoother, more efficient operations by bringing service companies on board as part of the team. For the service industry, it means a radical change in the way business is conducted, taking on more responsibility in return for greater incentives. This article reviews the need for change and the approach Schlumberger has adopted to meet this challenge. 20 figs., 20 refs
Chafcouloff, S.; Michel, G.; Trice, M. [Schlumberger Integrated Project Management Group, Montrouge (France); Clark, G. [Schlumberger Testing Services, Aberdeen (United Kingdom); Cosad, C.; Forbes, K. [Schlumberger Integrated Project Management Group, Aberdeen (United Kingdom)
1995-12-31
Integrated services is the name given to several services grouped together under a single contract. Four key factors determine the success of integrated services projects: teamwork, common objectives, technology, and shared benefits. For oil companies, integration means smoother, more efficient operations by bringing service companies on board as part of the team. For the service industry, it means a radical change in the way business is conducted, taking on more responsibility in return for greater incentives. This article reviews the need for change and the approach Schlumberger has adopted to meet this challenge. 20 figs., 20 refs
Lioara-Bianca BUBOIU
2015-04-01
Full Text Available Accepting and valuing people with disabilities is a key aspect of social policies promoted worldwide. The implementation of these policies aim normalize the lives of people with disabilities through full integration in the society to which they belong. Removing discrimination and social barriers equates to a maturing of the society, maturing translated by accepting diversity that surrounds us. Each person must be appreciated at its true value regardless of its condition of normality or deviation from it. Valuing individuals can be achieved only through a full acceptance in society, by assigning statuses and fulfilling social roles. School integration of children with special educational needs in mainstream education is a challenge and involves many aspects to be successful. It is the premise of social integration, the basis for future socio-professional insertion. Integrated education is the first step towards a world of equal opportunities, a world without discrimination.
Knudsen, Lars Ramkilde; Wagner, David
2002-01-01
This paper considers a cryptanalytic approach called integral cryptanalysis. It can be seen as a dual to differential cryptanalysis and applies to ciphers not vulnerable to differential attacks. The method is particularly applicable to block ciphers which use bijective components only.......This paper considers a cryptanalytic approach called integral cryptanalysis. It can be seen as a dual to differential cryptanalysis and applies to ciphers not vulnerable to differential attacks. The method is particularly applicable to block ciphers which use bijective components only....
Siemieniuch, C E; Sinclair, M A
2006-01-01
The paper presents a view of systems integration, from an ergonomics/human factors perspective, emphasising the process of systems integration as is carried out by humans. The first section discusses some of the fundamental issues in systems integration, such as the significance of systems boundaries, systems lifecycle and systems entropy, issues arising from complexity, the implications of systems immortality, and so on. The next section outlines various generic processes for executing systems integration, to act as guides for practitioners. These address both the design of the system to be integrated and the preparation of the wider system in which the integration will occur. Then the next section outlines some of the human-specific issues that would need to be addressed in such processes; for example, indeterminacy and incompleteness, the prediction of human reliability, workload issues, extended situation awareness, and knowledge lifecycle management. For all of these, suggestions and further readings are proposed. Finally, the conclusions section reiterates in condensed form the major issues arising from the above.
Cartier, Pierre; DeWitt-Morette, Cecile
2010-06-01
Acknowledgements; List symbols, conventions, and formulary; Part I. The Physical and Mathematical Environment: 1. The physical and mathematical environment; Part II. Quantum Mechanics: 2. First lesson: gaussian integrals; 3. Selected examples; 4. Semiclassical expansion: WKB; 5. Semiclassical expansion: beyond WKB; 6. Quantum dynamics: path integrals and operator formalism; Part III. Methods from Differential Geometry: 7. Symmetries; 8. Homotopy; 9. Grassmann analysis: basics; 10. Grassmann analysis: applications; 11. Volume elements, divergences, gradients; Part IV. Non-Gaussian Applications: 12. Poisson processes in physics; 13. A mathematical theory of Poisson processes; 14. First exit time: energy problems; Part V. Problems in Quantum Field Theory: 15. Renormalization 1: an introduction; 16. Renormalization 2: scaling; 17. Renormalization 3: combinatorics; 18. Volume elements in quantum field theory Bryce DeWitt; Part VI. Projects: 19. Projects; Appendix A. Forward and backward integrals: spaces of pointed paths; Appendix B. Product integrals; Appendix C. A compendium of gaussian integrals; Appendix D. Wick calculus Alexander Wurm; Appendix E. The Jacobi operator; Appendix F. Change of variables of integration; Appendix G. Analytic properties of covariances; Appendix H. Feynman's checkerboard; Bibliography; Index.
Petersson, Eva
2005-01-01
the theoretical foundations of play and learning. In this presentation, we explore pedagogical potentials of new technologies and traditional toys integrated into a physical and virtual toy (hereinafter called integrated toy) with specific focus on the open-ended toy and non-formal learning. The integrated toy......Toys play a crucial role in supporting children’s learning and creation of meaning in their everyday life. Children also play with toys out of an interest to interact with others e.g. peers and adults. Tendencies of digital technology in toys have led to greater opportunities for manipulation...... and interaction supporting children’s play and learning such that technology is ever-present in the play environments of children. Although electronics have been deployed in tools for play and learning, most of it has facilitated individual learning. Computer games, for instance, most often are designed...
Merlo, Domenico Franco; Vahakangas, Kirsi; Knudsen, Lisbeth E.
2008-01-01
consent was obtained.Integrity is central to environmental health research searching for causal relations. It requires open communication and trust and any violation (i.e., research misconduct, including fabrication or falsification of data, plagiarism, conflicting interests, etc.) may endanger...
2006-01-01
St. John Health consists of nine hospitals throughout southern Michigan. Recently, in an attempt to brand the system as the state's premiere place for medical services, the system launched 'Real Medicine', a campaign that brands all nine hospitals together. Using print, radio, and television spots, the effort also integrates direct mail collateral and brochures to reach consumers.
Harris, Robert; Smids, Annejoke; Kors, Ninja
2007-01-01
This is an article about the integration of instrumental teaching, aural skills and keyboard skills and music theory at the pre-tertiary level. Team teaching and discipline crossover offer a possible solution to students’ inability to apply skills taught by specialists in separate fields. A personal
Bailey, David H.; Borwein, Jonathan M.; Crandall, Richard E.
2006-06-01
By a "box integral" we mean here an expectation $\\langle|\\vec r - \\vec q|^s \\rangle$ where $\\vec r$runs over the unit $n$-cube,with $\\vec q$ and $s$ fixed, explicitly:\\begin eqnarray*&&\\int_01 \\cdots \\int_01 \\left((r_1 - q_1)2 + \\dots+(r_n-q_n)2\\right)^ s/2 \\ dr_1 \\cdots dr_n.\\end eqnarray* The study ofbox integrals leads one naturally into several disparate fields ofanalysis. While previous studies have focused upon symbolic evaluationand asymptotic analysis of special cases (notably $s = 1$), we workherein more generally--in interdisciplinary fashion--developing resultssuch as: (1) analytic continuation (in complex $s$), (2) relevantcombinatorial identities, (3) rapidly converging series, (4) statisticalinferences, (5) connections to mathematical physics, and (6)extreme-precision quadrature techniques appropriate for these integrals.These intuitions and results open up avenues of experimental mathematics,with a view to new conjectures and theorems on integrals of thistype.
Srivastava, H. M.; Saxena, R. K.; Parmar, R. K.
2018-01-01
Our present investigation is inspired by the recent interesting extensions (by Srivastava et al. [35]) of a pair of the Mellin-Barnes type contour integral representations of their incomplete generalized hypergeometric functions p γ q and p Γ q by means of the incomplete gamma functions γ( s, x) and Γ( s, x). Here, in this sequel, we introduce a family of the relatively more general incomplete H-functions γ p,q m,n ( z) and Γ p,q m,n ( z) as well as their such special cases as the incomplete Fox-Wright generalized hypergeometric functions p Ψ q (γ) [ z] and p Ψ q (Γ) [ z]. The main object of this paper is to study and investigate several interesting properties of these incomplete H-functions, including (for example) decomposition and reduction formulas, derivative formulas, various integral transforms, computational representations, and so on. We apply some substantially general Riemann-Liouville and Weyl type fractional integral operators to each of these incomplete H-functions. We indicate the easilyderivable extensions of the results presented here that hold for the corresponding incomplete \\overline H -functions as well. Potential applications of many of these incomplete special functions involving (for example) probability theory are also indicated.
PREFACE Integrability and nonlinear phenomena Integrability and nonlinear phenomena
Gómez-Ullate, David; Lombardo, Sara; Mañas, Manuel; Mazzocco, Marta; Nijhoff, Frank; Sommacal, Matteo
2010-10-01
indicate that a certain class of initial waves approach asymptotically these exact solutions of the KP equation. The author discusses an application of the theory to the problem of the resonant interaction of solitary waves appearing in the reflection of an obliquely incident wave onto a vertical wall, known as the Mach reflection problem in shallow water. A beautiful explanation of the problem was presented in a swimming pool experiment during NEEDS 2009. Smooth and peaked solitons of the CH equation Holm and Ivanov [4] discuss the relations between smooth and peaked soliton solutions for the Camassa-Holm (CH) shallow water wave equation in one spatial dimension. They first present the derivation of the soliton solution for the CH equation by means of inverse scattering transform (IST); the solution is obtained in a form that admits the peakon limit. The canonical Hamiltonian formulation of the CH equation in action-angle variables is recovered using the scattering data. The authors review some of the geometric properties of the CH equation and conclude their review with the higher dimensional generalization of the dispersionless CH equation, known as EPDiff. They also consider the possible extensions of their approach in three open problems. Regular contributions to this issue cover a wide range of topics related to integrable systems. Let us briefly illustrate some of the topics covered by this issue. One of the main topics is the study of hierarchies of integrable equations. The multifaceted idea of integrability of a particular PDE includes an approach whose aim is to find an infinite set of independent conserved quantities, much in the spirit of Liouville integrability in classical mechanics. The existence of these conserved quantities in involution, or of the corresponding infinite set of commuting symmetries, leads to an infinite set of commuting flows; i.e., to the construction of a hierarchy of compatible PDEs with respect to an infinite set of times. Obviously
Jørgensen, Michael; Nielsen, M. W.; Strømann-Andersen, Jakob Bjørn
2011-01-01
and describe the decision process. Specific attention is given to how the engineering input was presented and how it was able to facilitate the design development. Site and context, building shape, organization of functions and HVAC-systems were all included to obtain a complete picture of the building......, low-energy consumption, and high-quality indoor environment. We use this case study to investigate how technical knowledge about building performance can be integrated into the conceptual design stage. We have selected certain points during the design process that represented design challenges...
Chierchia, L.
1986-01-01
In the first chapter, the eigenvalue problem for a periodic Schroedinger operator, Lf = (-d 2 /dx 2 + v)f = Ef, is viewed as a two-dimensional Hamiltonian system which is integrable in the sense of Arnold and Liouville. With the aid of the Floquet-BLoch theory, it is shown that such a system is conjugate to two harmonic oscillators with frequencies α and omega, being the rotation number for L and 2π/omega the period of the potential v. This picture is generalized in the second chapter, to quasi periodic Schroedinger operators, L/sub epsilon/, with highly irrational frequencies (omega 1 , ..., omega/sub d/), which are a small perturbation of periodic operators. In the last chapter, the absolutely continuous spectrum σ/sub ac/ of a general quasi-periodic Schroedinger operators is considered. The Radon-Nikodym derivatives (with respect to Lebesgue measure) of the spectral measures are computed in terms of special independent eigensolutions existing for almost ever E in σ/sub ac/. Finally, it is shown that weak Bloch waves always exist for almost ever E in σ/sub ac/ and the question of the existence of genuine Bloch waves is turned into a regularity problem for a certain nonlinear partial differential equation on a d-dimensional torus
Hollaway, F.W.
1985-01-01
During 1984, all portions of the Nova control system that were necessary for the support of laser activation and completion of the Nova project were finished and placed in service on time. The Nova control system has been unique in providing, on schedule, the capabilities required in the central control room and in various local control areas throughout the facility. The ambitious goal of deploying this system early enough to use it as an aid in the activation of the laser was accomplished; thus the control system made a major contribution to the completion of Nova activation on schedule. Support and enhancement activities continued during the year on the VAX computer systems, central control room, operator consoles and displays, Novanet data communications network, system-level software for both the VAX and LSI-11 computers, Praxis control system computer language, software management tools, and the development system, which includes office terminals. Computational support was also supplied for a wide variety of test fixtures required by the optical and mechanical subsystems. Significant new advancements were made in four areas in integrated controls this year: the integration software (which includes the shot scheduler), the Praxis language, software quality assurance audit, and software development and data handling. A description of the accomplishments in each of these areas follows
Fractional Dirac bracket on Riemman-Liouville context
Godinho, Cresus F.L.; Abreu, Everton M.C. [Universidade Federal do Rio de Janeiro (UFRJ), RJ (Brazil)
2011-07-01
Full text: So far, it is not well known how to deal with dissipative systems. There are many ways explored in the literature and none of them present a systematic and general procedure to tackle the problem. On the other hand, it is well known that the fractional formalism is a powerful alternative when treating dissipative problems. In this paper we propose a detailed way of attacking the issue using the fractional calculus to construct an extension for the Dirac brackets in order to furnish the quantization of nonconservative theories through the standard canonical way. We believe that it can be the first step to construct gauge theories from second-class systems using these extended Dirac brackets. Very popular in the nineties, where an industrial production of papers concerning methods treating constrained systems, the Dirac brackets (DB) were an unmodified common point between all papers in the subject. The main objective of many works were to convert second-class systems in a first-class one, which is considered a gauge theory, i. e., the holy grail for the Standard Model. Although not so popular as before, the analysis of constrained systems deserves some recent attentions in the literature. On the other hand, there are various problems when considering classical systems besides the ones involving the quantization of second-class systems as we saw just above. These problems constitutes the so-called nonconservative systems. The curiosity about them is that the great majority of classical systems is nonconservative and nevertheless, the most advanced formalisms of classical mechanics deals only with conservative systems. One way to attack nonconservative systems is through the Fractional Calculus (FC) since it can be shown that, for example, a friction force has its form resulting from a Lagrangian containing a term proportional to the fractional derivative which is a derivative of any non-integer order. Fractional calculus is one of the generalizations of the classical calculus. It has been used in several fields of science such as turbulence and fluid dynamics, stochastic dynamical systems and plasma physics. In this work we will use the well known FC to analyze the well established DB. The objective is to construct a generalized DB capable of treating a bigger number of mechanical systems than the standard DB. (author)
Multidimensional singular integrals and integral equations
Mikhlin, Solomon Grigorievich; Stark, M; Ulam, S
1965-01-01
Multidimensional Singular Integrals and Integral Equations presents the results of the theory of multidimensional singular integrals and of equations containing such integrals. Emphasis is on singular integrals taken over Euclidean space or in the closed manifold of Liapounov and equations containing such integrals. This volume is comprised of eight chapters and begins with an overview of some theorems on linear equations in Banach spaces, followed by a discussion on the simplest properties of multidimensional singular integrals. Subsequent chapters deal with compounding of singular integrals
PREFACE: Symmetries and Integrability of Difference Equations
Doliwa, Adam; Korhonen, Risto; Lafortune, Stéphane
2007-10-01
The notion of integrability was first introduced in the 19th century in the context of classical mechanics with the definition of Liouville integrability for Hamiltonian flows. Since then, several notions of integrability have been introduced for partial and ordinary differential equations. Closely related to integrability theory is the symmetry analysis of nonlinear evolution equations. Symmetry analysis takes advantage of the Lie group structure of a given equation to study its properties. Together, integrability theory and symmetry analysis provide the main method by which nonlinear evolution equations can be solved explicitly. Difference equations (DE), like differential equations, are important in numerous fields of science and have a wide variety of applications in such areas as mathematical physics, computer visualization, numerical analysis, mathematical biology, economics, combinatorics, and quantum field theory. It is thus crucial to develop tools to study and solve DEs. While the theory of symmetry and integrability for differential equations is now largely well-established, this is not yet the case for discrete equations. Although over recent years there has been significant progress in the development of a complete analytic theory of difference equations, further tools are still needed to fully understand, for instance, the symmetries, asymptotics and the singularity structure of difference equations. The series of SIDE meetings on Symmetries and Integrability of Difference Equations started in 1994. Its goal is to provide a platform for an international and interdisciplinary communication for researchers working in areas associated with integrable discrete systems, such as classical and quantum physics, computer science and numerical analysis, mathematical biology and economics, discrete geometry and combinatorics, theory of special functions, etc. The previous SIDE meetings took place in Estérel near Montréal, Canada (1994), at the University of
Warwick-Giles, Lynsey; Checkland, Kath
2018-03-19
Purpose The purpose of this paper is to try and understand how several organisations in one area in England are working together to develop an integrated care programme. Weick's (1995) concept of sensemaking is used as a lens to examine how the organisations are working collaboratively and maintaining the programme. Design/methodology/approach Qualitative methods included: non-participant observations of meetings, interviews with key stakeholders and the collection of documents relating to the programme. These provided wider contextual information about the programme. Comprehensive field notes were taken during observations and analysed alongside interview transcriptions using NVIVO software. Findings This paper illustrates the importance of the construction of a shared identity across all organisations involved in the programme. Furthermore, the wider policy discourse impacted on how the programme developed and influenced how organisations worked together. Originality/value The role of leaders from all organisations involved in the programme was of significance to the overall development of the programme and the sustained momentum behind the programme. Leaders were able to generate a "narrative of success" to drive the programme forward. This is of particular relevance to evaluators, highlighting the importance of using multiple methods to allow researchers to probe beneath the surface of programmes to ensure that evidence moves beyond this public narrative.
Definite Integrals using Orthogonality and Integral Transforms
Howard S. Cohl
2012-10-01
Full Text Available We obtain definite integrals for products of associated Legendre functions with Bessel functions, associated Legendre functions, and Chebyshev polynomials of the first kind using orthogonality and integral transforms.
Integrated project delivery : The designer as integrator
Wamelink, J.W.F.; Koolwijk, J.S.J.; van Doorn, A.J.
2012-01-01
Process innovation related to integrated project delivery is an important topic in the building industry. Studies on process innovation through the use of integrated contracts usually focus on contractors, and particularly on the possibility of forward integration into the building process. Three
Lui, M; Chan, Andy; Long, Josh
2011-01-01
Pro Spring Integration is an authoritative book from the experts that guides you through the vast world of enterprise application integration (EAI) and application of the Spring Integration framework towards solving integration problems. The book is:. * An introduction to the concepts of enterprise application integration * A reference on building event-driven applications using Spring Integration * A guide to solving common integration problems using Spring Integration What makes this book unique is its coverage of contemporary technologies and real-world information, with a focus on common p
Tactical Systems Integration Laboratory
Federal Laboratory Consortium — The Tactical Systems Integration Laboratory is used to design and integrate computer hardware and software and related electronic subsystems for tactical vehicles....
Černiavskaitė, Marija
2017-01-01
This Bachelor's thesis presents SAP CRM and integration systems testing analysis: investigation in SAP CRM and SAP PO systems, presentation of relationship between systems, introduction to third-party system (non-SAP) – Network Informational System (NIS) which has integration with SAP, presentation of best CRM testing practises, analysis and recommendation of integration testing. Practical integration testing is done in accordance to recommendations.
Guyt, J.; Macara, C.
1997-12-31
This paper focuses on some of the issues necessary for pipeline operators to consider when addressing the challenge of managing the integrity of their systems. Topics are: Definition; business justification; creation and safeguarding of technical integrity; control and deviation from technical integrity; pipelines; pipeline failure assessment; pipeline integrity assessment; leak detection; emergency response. 6 figs., 3 tabs.
Integral consideration of integrated management systems
Frauenknecht, Stefan; Schmitz, Hans
2010-01-01
Aim of the project for the NPPs Kruemmel and Brunsbuettel (Vattenfall) is the integral view of the business process as basis for the implementation and operation of management systems in the domains quality, safety and environment. The authors describe the integral view of the business processes in the frame of integrated management systems with the focus nuclear safety, lessons learned in the past, the concept of a process-based controlling system and experiences from the practical realization.
Dreßen, Alana; Hilberath, Thomas; Mackfeld, Ursula; Billmeier, Arne; Rudat, Jens; Pohl, Martina
2017-09-20
Phenylalanine ammonia lyase (PAL) from Arabidopsis thaliana (AtPAL2) was comparatively characterized to the well-studied enzyme from parsley (PcPAL1) and Rhodosporidium toruloides (RtPAL) with respect to kinetic parameters for the deamination and the amination reaction, pH- and temperature optima and the substrate range of the amination reaction. Whereas both plant enzymes are specific for phenylalanine, the bifunctional enzyme from Rhodosporidium toruloides shows K M -values for L-Phe and L-Tyr in the same order of magnitude and, compared to both plant enzymes, a 10-15-fold higher activity. At 30°C all enzymes were sufficiently stable with half-lives of 3.4days (PcPAL1), 4.6days (AtPAL2) and 9.7days (RtPAL/TAL). Very good results for the amination of various trans-cinnamic acid derivatives were obtained using E. coli cells as whole cell biocatalysts in ammonium carbonate buffer. Investigation of the substrate ranges gave interesting results for the newly tested enzymes from A. thaliana and R. toruloides. Only the latter accepts besides 4-hydroxy-CA also 3-methoxy-4-hydroxy-CA as a substrate, which is an interesting intermediate for the formation of pharmaceutically relevant L-Dopa. AtPAL2 is a very good catalyst for the formation of (S)-3-F-Phe, (S)-4-F-Phe and (S)-2-Cl-Phe. Such non-canonical amino acids are valuable building blocks for the formation of various drug molecules. Copyright © 2017 Elsevier B.V. All rights reserved.
Buried waste integrated demonstration technology integration process
Ferguson, J.S.; Ferguson, J.E.
1992-04-01
A Technology integration Process was developed for the Idaho National Energy Laboratories (INEL) Buried Waste Integrated Demonstration (BWID) Program to facilitate the transfer of technology and knowledge from industry, universities, and other Federal agencies into the BWID; to successfully transfer demonstrated technology and knowledge from the BWID to industry, universities, and other Federal agencies; and to share demonstrated technologies and knowledge between Integrated Demonstrations and other Department of Energy (DOE) spread throughout the DOE Complex. This document also details specific methods and tools for integrating and transferring technologies into or out of the BWID program. The document provides background on the BWID program and technology development needs, demonstrates the direction of technology transfer, illustrates current processes for this transfer, and lists points of contact for prospective participants in the BWID technology transfer efforts. The Technology Integration Process was prepared to ensure compliance with the requirements of DOE's Office of Technology Development (OTD)
Power Systems Integration Laboratory | Energy Systems Integration Facility
| NREL Power Systems Integration Laboratory Power Systems Integration Laboratory Research in the Energy System Integration Facility's Power Systems Integration Laboratory focuses on the microgrid applications. Photo of engineers testing an inverter in the Power Systems Integration Laboratory
Grid Integration Research | Wind | NREL
Grid Integration Research Grid Integration Research Researchers study grid integration of wind three wind turbines with transmission lines in the background. Capabilities NREL's grid integration electric power system operators to more efficiently manage wind grid system integration. A photo of
Distribution Integration | Grid Modernization | NREL
Distribution Integration Distribution Integration The goal of NREL's distribution integration research is to tackle the challenges facing the widespread integration of distributed energy resources NREL engineers mapping out a grid model on a whiteboard. NREL's research on the integration of
Transmission Integration | Grid Modernization | NREL
Transmission Integration Transmission Integration The goal of NREL's transmission integration integration issues and provide data, analysis, and models to enable the electric power system to more and finding solutions to address them to enable transmission grid integration. Capabilities Power
Sun Yi; Chang Haoran
2012-01-01
By further examining the symmetry of external momenta and masses in Feynman integrals, we fulfilled the method proposed by Battistel and Dallabona, and showed that recursion relations in this method can be applied to simplify Feynman integrals directly. (authors)
Laplace Transforms without Integration
Robertson, Robert L.
2017-01-01
Calculating Laplace transforms from the definition often requires tedious integrations. This paper provides an integration-free technique for calculating Laplace transforms of many familiar functions. It also shows how the technique can be applied to probability theory.
Sesquilinear uniform vector integral
theory, together with his integral, dominate contemporary mathematics. ... directions belonging to Bartle and Dinculeanu (see [1], [6], [7] and [2]). ... in this manner, namely he integrated vector functions with respect to measures of bounded.
The Integrated Renovation Process
Galiotto, Nicolas; Heiselberg, Per; Knudstrup, Mary-Ann
The Integrated Renovation Process (IRP) is a user customized methodology based on judiciously selected constructivist and interactive multi-criteria decision making methods (Galiotto, Heiselberg, & Knudstrup, 2014 (expected)). When applied for home renovation, the Integrated Renovation Process...
Pandey, Chandan
2015-01-01
This book is intended for developers who are either already involved with enterprise integration or planning to venture into the domain. Basic knowledge of Java and Spring is expected. For newer users, this book can be used to understand an integration scenario, what the challenges are, and how Spring Integration can be used to solve it. Prior experience of Spring Integration is not expected as this book will walk you through all the code examples.
Tucker, Jerry H.; Tapia, Moiez A.; Bennett, A. Wayne
1988-01-01
The concept of Boolean integration is developed, and different Boolean integral operators are introduced. Given the changes in a desired function in terms of the changes in its arguments, the ways of 'integrating' (i.e. realizing) such a function, if it exists, are presented. The necessary and sufficient conditions for integrating, in different senses, the expression specifying the changes are obtained. Boolean calculus has applications in the design of logic circuits and in fault analysis.
Integrated vs. Federated Search
Løvschall, Kasper
2009-01-01
Oplæg om forskelle og ligheder mellem integrated og federated search i bibliotekskontekst. Holdt ved temadag om "Integrated Search - samsøgning i alle kilder" på Danmarks Biblioteksskole den 22. januar 2009.......Oplæg om forskelle og ligheder mellem integrated og federated search i bibliotekskontekst. Holdt ved temadag om "Integrated Search - samsøgning i alle kilder" på Danmarks Biblioteksskole den 22. januar 2009....
Integrated nursery pest management
R. Kasten Dumroese
2012-01-01
What is integrated pest management? Take a look at the definition of each word to better understand the concept. Two of the words (integrated and management) are relatively straightforward. Integrated means to blend pieces or concepts into a unified whole, and management is the wise use of techniques to successfully accomplish a desired outcome. A pest is any biotic (...
Ahner, Henry
2009-01-01
Integration (here visualized as a pounding process) is mathematically realized by simple transformations, successively smoothing the bounding curve into a straight line and the region-to-be-integrated into an area-equivalent rectangle. The relationship to Riemann sums, and to the trapezoid and midpoint methods of numerical integration, is…
Discrete bipolar universal integrals
Greco, S.; Mesiar, Radko; Rindone, F.
2014-01-01
Roč. 252, č. 1 (2014), s. 55-65 ISSN 0165-0114 R&D Projects: GA ČR GAP402/11/0378 Institutional support: RVO:67985556 Keywords : bipolar integral * universal integral * Choquet integral Subject RIV: BA - General Mathematics Impact factor: 1.986, year: 2014 http://library.utia.cas.cz/separaty/2014/E/mesiar-0432224.pdf
Responsibility and Integrated Thinking
Robinson, SJ
2014-01-01
Integrated thinking is essentially focused in dialogue and communication. This is partly because relationships and related purpose focus on action, which itself acts as a means of integration, and partly because critical dialogue enables better, more responsive, integrated thinking and action.
Moerel, J.L.; Halswijk, W.
2010-01-01
These notes deal with the integration of a (sc)ramjet engine in either an axisymmetric or a waverider type of cruise missile configuration. The integration aspects relate to the integration of the external and internal flow paths in geometrical configurations that are being considered worldwide.
Foundations for Psychotherapy Integration
António Branco Vasco
2014-10-01
Full Text Available The movement for integration in psychotheray is clearly one of the main trends that can be observed in the field. The author stresses three main reasons for this state of affairs and as a way of justifying the importance of integration: historical and psychosocial, empirical and philosophical. A specific way of thinking in integrative terms is also outlined - "paradigmatic complementarity."
Steffensen's integral inequality for conformable fractional integrals
Mehmet Zeki Sarikaya
2017-09-01
Full Text Available The aim of this paper is to establish some Steffensen’s type inequalities for conformable fractional integral. The results presented here would provide generalizations of those given in earlier works.
Juanarena, D.B.; Rao, M.G.
1991-01-01
Integrated cryogenic pressure-temperature, level-temperature, and flow-temperature sensors have several advantages over the conventional single parameter sensors. Such integrated sensors were not available until recently. Pressure Systems, Inc. (PSI) of Hampton, Virginia, has introduced precalibrated precision cryogenic pressure sensors at the Los Angeles Cryogenic Engineering Conference in 1989. Recently, PSI has successfully completed the development of integrated pressure-temperature and level-temperature sensors for use in the temperature range 1.5-375K. In this paper, performance characteristics of these integrated sensors are presented. Further, the effects of irradiation and magnetic fields on these integrated sensors are also reviewed
Pitkänen, Kati; Oratuomi, Joose; Hellgren, Daniela
Increased attention to, and careful planning of the integration of migrants into Nordic societies is ever more important. Nature based integration is a new solution to respond to this need. This report presents the results of a Nordic survey and workshop and illustrates current practices of nature...... based integration by case study descriptions from Denmark, Sweden Norway and Finland. Across Nordic countries several practical projects and initiatives have been launched to promote the benefits of nature in integration and there is also growing academic interest in the topic. Nordic countries have...... the potential of becoming real forerunners in nature based integration even at the global scale....
Krainak, Michael; Merritt, Scott
2016-01-01
Integrated photonics generally is the integration of multiple lithographically defined photonic and electronic components and devices (e.g. lasers, detectors, waveguides passive structures, modulators, electronic control and optical interconnects) on a single platform with nanometer-scale feature sizes. The development of photonic integrated circuits permits size, weight, power and cost reductions for spacecraft microprocessors, optical communication, processor buses, advanced data processing, and integrated optic science instrument optical systems, subsystems and components. This is particularly critical for small spacecraft platforms. We will give an overview of some NASA applications for integrated photonics.
Thatcher, D.
1989-01-01
The NRC has recognized the need to integrate generic issues (GIs). The GI process includes a number of phases, all of which should recognize the potential for overlap and conflict among related issues. In addition to the issues themselves, other related NRC and industry programs and activities need to be factored into the GI process. Integration has taken place, or is taking place, for a number of GIs. Each case of integration involves a specific set of circumstances and, as a result, the way in which integration proceeds can vary. This paper discusses the integration of issues in the generic issue process and provides a number of examples
Finn, John M.
2015-01-01
Properties of integration schemes for solenoidal fields in three dimensions are studied, with a focus on integrating magnetic field lines in a plasma using adaptive time stepping. It is shown that implicit midpoint (IM) and a scheme we call three-dimensional leapfrog (LF) can do a good job (in the sense of preserving KAM tori) of integrating fields that are reversible, or (for LF) have a “special divergence-free” (SDF) property. We review the notion of a self-adjoint scheme, showing that such schemes are at least second order accurate and can always be formed by composing an arbitrary scheme with its adjoint. We also review the concept of reversibility, showing that a reversible but not exactly volume-preserving scheme can lead to a fractal invariant measure in a chaotic region, although this property may not often be observable. We also show numerical results indicating that the IM and LF schemes can fail to preserve KAM tori when the reversibility property (and the SDF property for LF) of the field is broken. We discuss extensions to measure preserving flows, the integration of magnetic field lines in a plasma and the integration of rays for several plasma waves. The main new result of this paper relates to non-uniform time stepping for volume-preserving flows. We investigate two potential schemes, both based on the general method of Feng and Shang [Numer. Math. 71, 451 (1995)], in which the flow is integrated in split time steps, each Hamiltonian in two dimensions. The first scheme is an extension of the method of extended phase space, a well-proven method of symplectic integration with non-uniform time steps. This method is found not to work, and an explanation is given. The second method investigated is a method based on transformation to canonical variables for the two split-step Hamiltonian systems. This method, which is related to the method of non-canonical generating functions of Richardson and Finn [Plasma Phys. Controlled Fusion 54, 014004 (2012
Bygstad, Bendik; Nielsen, Peter Axel; Munkvold, Bjørn Erik
2010-01-01
This paper aims to contribute to a theory of integration within the field of IS project management. Integration is a key IS project management issue when new systems are developed and implemented into an increasingly integrated information infrastructure in corporate and governmental organizations....... Expanding the perspective of traditional project management research, we draw extensively on central insights from IS research. Building on socio-technical IS research and Software Engineering research we suggest four generic patterns of integration: Big Bang, Stakeholder Integration, Technical Integration...... and Socio-Technical Integration. We analyze and describe the advantages and disadvantages of each pattern. The four patterns are ideal types. To explore the forces and challenges in these patterns three longitudinal case studies were conducted. In particular we investigate the management challenges for each...
Searching for integrable systems
Cary, J.R.
1984-01-01
Lack of integrability leads to undesirable consequences in a number of physical systems. The lack of integrability of the magnetic field leads to enhanced particle transport in stellarators and tokamaks with tearing-mode turbulence. Limitations of the luminosity of colliding beams may be due to the onset of stochasticity. Enhanced radial transport in mirror machines caused by the lack of integrability and/or the presence of resonances may be a significant problem in future devices. To improve such systems one needs a systematic method for finding integrable systems. Of course, it is easy to find integrable systems if no restrictions are imposed; textbooks are full of such examples. The problem is to find integrable systems given a set of constraints. An example of this type of problem is that of finding integrable vacuum magnetic fields with rotational transform. The solution to this problem is relevant to the magnetic-confinement program
A Lagrangian formalism for nonequilibrium ensembles
Sobouti, Y.
1989-08-01
It is suggested to formulate a nonequilibrium ensemble theory by maximizing a time-integrated entropy constrained by Liouville's equation. This leads to distribution functions of the form f = Z -1 exp(-g/kT), where g(p,q,t) is a solution of Liouville's equation. A further requirement that the entropy should be an additivie functional of the integrals of Liouville's equation, limits the choice of g to linear superpositions of the nonlinearly independent integrals of motion. Time-dependent and time-independent integrals may participate in this superposition. (author). 14 refs
Energy Systems Integration Facility Videos | Energy Systems Integration
Facility | NREL Energy Systems Integration Facility Videos Energy Systems Integration Facility Integration Facility NREL + SolarCity: Maximizing Solar Power on Electrical Grids Redefining What's Possible for Renewable Energy: Grid Integration Robot-Powered Reliability Testing at NREL's ESIF Microgrid
Energy Systems Integration Laboratory | Energy Systems Integration Facility
| NREL Integration Laboratory Energy Systems Integration Laboratory Research in the Energy Systems Integration Laboratory is advancing engineering knowledge and market deployment of hydrogen technologies. Applications include microgrids, energy storage for renewables integration, and home- and station
Hinkel, J.
2008-01-01
Keywords: climate change, integrated assessment, knowledge integration, transdisciplinary research, vulnerability, vulnerability assessment.
This thesis explores how transdisciplinary knowledge integration can be facilitated in the context of integrated assessments and vulnerability
Immigrant Integration: Acculturation and Social Integration
Astrid HAMBERGER
2009-11-01
Full Text Available This article tackles the concept of “immigrant integration” as it is analyzed by different authors in the international migration field. In this article, I will use the terms “refugee” and “immigrant” as equivalent to each other due to the interchangeable character of these concepts throughout the integration literature. First, the article brings into discussion the definitional and conceptual battle around the concept of immigrant “integration”, and second, it will describe and analyze cultural and social integration with their presupposing processes.
What constitutes information integrity?
S. Flowerday
2008-01-01
Full Text Available This research focused on what constitutes information integrity as this is a problem facing companies today. Moreover, information integrity is a pillar of information security and is required in order to have a sound security management programme. However, it is acknowledged that 100% information integrity is not currently achievable due to various limitations and therefore the auditing concept of reasonable assurance is adopted. This is in line with the concept that 100% information security is not achievable and the notion that adequate security is the goal, using appropriate countermeasures. The main contribution of this article is to illustrate the importance of and provide a macro view of what constitutes information integrity. The findings are in harmony with Samuel Johnson's words (1751: 'Integrity without knowledge is weak and useless, and knowledge without integrity is dangerous and dreadful.'
What constitutes information integrity?
S. Flowerday
2007-12-01
Full Text Available This research focused on what constitutes information integrity as this is a problem facing companies today. Moreover, information integrity is a pillar of information security and is required in order to have a sound security management programme. However, it is acknowledged that 100% information integrity is not currently achievable due to various limitations and therefore the auditing concept of reasonable assurance is adopted. This is in line with the concept that 100% information security is not achievable and the notion that adequate security is the goal, using appropriate countermeasures. The main contribution of this article is to illustrate the importance of and provide a macro view of what constitutes information integrity. The findings are in harmony with Samuel Johnson's words (1751: 'Integrity without knowledge is weak and useless, and knowledge without integrity is dangerous and dreadful.'
Golden, L.B.
1968-01-01
In atomic structure calculations, one has to evaluate the Slater integrals. In the present program, the authors evaluate exactly the Slater integral when hydrogenic wave functions are used for the bound-state orbitals. When hydrogenic wave functions are used, the Slater integrals involve integrands which can be written in the form of a product of an exponential, exp(ax) and a known analytic polynomial function, f(x). By repeated partial integration such an integral can be expressed in terms of a finite series involving the exponential, the polynomial function and its derivatives. PL/1-FORMAC has a built-in subroutine that will analytically find the derivatives of any multinomial. Thus, the finite series and hence the Slater integral can be evaluated analytically. (Auth.)
Integrated security system definition
Campbell, G.K.; Hall, J.R. II
1985-01-01
The objectives of an integrated security system are to detect intruders and unauthorized activities with a high degree of reliability and the to deter and delay them until effective response/engagement can be accomplished. Definition of an effective integrated security system requires proper application of a system engineering methodology. This paper summarizes a methodology and describes its application to the problem of integrated security system definition. This process includes requirements identification and analysis, allocation of identified system requirements to the subsystem level and provides a basis for identification of synergistic subsystem elements and for synthesis into an integrated system. The paper discusses how this is accomplished, emphasizing at each step how system integration and subsystem synergism is considered. The paper concludes with the product of the process: implementation of an integrated security system
Bugdol, Marek
2015-01-01
Examining the challenges of integrated management, this book explores the importance and potential benefits of using an integrated approach as a cross-functional concept of management. It covers not only standardized management systems (e.g. International Organization for Standardization), but also models of self-assessment, as well as different types of integration. Furthermore, it demonstrates how processes and systems can be integrated, and how management efficiency can be increased. The major part of this book focuses on management concepts which use integration as a key tool of management processes (e.g. the systematic approach, supply chain management, virtual and network organizations, processes management and total quality management). Case studies, illustrations, and tables are also provided to exemplify and illuminate the content, as well as examples of successful and failed integrations. Providing a particularly useful resource to managers and specialists involved in the improvement of organization...
Integration of reusable systems
Rubin, Stuart
2014-01-01
Software reuse and integration has been described as the process of creating software systems from existing software rather than building software systems from scratch. Whereas reuse solely deals with the artifacts creation, integration focuses on how reusable artifacts interact with the already existing parts of the specified transformation. Currently, most reuse research focuses on creating and integrating adaptable components at development or at compile time. However, with the emergence of ubiquitous computing, reuse technologies that can support adaptation and reconfiguration of architectures and components at runtime are in demand. This edited book includes 15 high quality research papers written by experts in information reuse and integration to cover the most recent advances in the field. These papers are extended versions of the best papers which were presented at IEEE International Conference on Information Reuse and Integration and IEEE International Workshop on Formal Methods Integration, which wa...
Glasser, M L, E-mail: laryg@clarkson.edu [Department of Physics, Clarkson University, Potsdam, NY 13699-5820 (United States); Departamento de Fisica Teorica, Atomica y Optica, Universidad de Valladolid, Valladolid 470071 (Spain)
2011-06-03
The identity {integral}{sub 0}{sup {pi}/2}d{Phi}{integral}{sub 0}{sup {pi}/2}d{Theta} sin{Phi} F(x sn{Phi} sin{Phi})={pi}/2 {integral}{sub 0}{sup 1}F(xt)dt, where F is any function, is derived. Several extensions are given and a few examples of physical interest are described.
Kauffman, L.H.
1990-01-01
This paper gives a heuristic derivation of the skein relation for the Homfly polynomial in an integral formalism. The derivation is formally correct but highly simplified. In the light of Witten's proposal for invariants of links via functional integrals, it is useful to have a formal pattern to compare with the complexities of the full approach. The formalism is a heuristic. However, it is closely related to the actual structure of the Witten functional integral
HETEROGENEOUS INTEGRATION TECHNOLOGY
2017-08-24
AFRL-RY-WP-TR-2017-0168 HETEROGENEOUS INTEGRATION TECHNOLOGY Dr. Burhan Bayraktaroglu Devices for Sensing Branch Aerospace Components & Subsystems...Final September 1, 2016 – May 1, 2017 4. TITLE AND SUBTITLE HETEROGENEOUS INTEGRATION TECHNOLOGY 5a. CONTRACT NUMBER In-house 5b. GRANT NUMBER N/A...provide a structure for this review. The history and the current status of integration technologies in each category are examined and product examples are
Branching trajectory continual integral
Maslov, V.P.; Chebotarev, A.M.
1980-01-01
Heuristic definition of the Feynman continual integral over branching trajectories is suggested which makes it possible to obtain in the closed form the solution of the Cauchy problem for the model Hartree equation. A number of properties of the solution is derived from an integral representation. In particular, the quasiclassical asymptotics, exact solution in the gaussian case and perturbation theory series are described. The existence theorem for the simpliest continual integral over branching trajectories is proved [ru
Gautier, G.M.
2002-01-01
This document presents the integrated reactors concepts by a presentation of four reactors: PIUS, SIR, IRIS and CAREM. The core conception, the operating, the safety, the economical aspects and the possible users are detailed. From the performance of the classical integrated PWR, the necessity of new innovative fuels utilization, the research of a simplified design to make easier the safety and the KWh cost decrease, a new integrated reactor is presented: SCAR 600. (A.L.B.)
Classical Mechanics and Symplectic Integration
Nordkvist, Nikolaj; Hjorth, Poul G.
2005-01-01
Content: Classical mechanics: Calculus of variations, Lagrange’s equations, Symmetries and Noether’s theorem, Hamilton’s equations, cannonical transformations, integrable systems, pertubation theory. Symplectic integration: Numerical integrators, symplectic integrators, main theorem on symplectic...
Handbook of integral equations
Polyanin, Andrei D
2008-01-01
This handbook contains over 2,500 integral equations with solutions as well as analytical and numerical methods for solving linear and nonlinear equations. It explores Volterra, Fredholm, WienerHopf, Hammerstein, Uryson, and other equations that arise in mathematics, physics, engineering, the sciences, and economics. This second edition includes new chapters on mixed multidimensional equations and methods of integral equations for ODEs and PDEs, along with over 400 new equations with exact solutions. With many examples added for illustrative purposes, it presents new material on Volterra, Fredholm, singular, hypersingular, dual, and nonlinear integral equations, integral transforms, and special functions.
Avionics systems integration technology
Stech, George; Williams, James R.
1988-01-01
A very dramatic and continuing explosion in digital electronics technology has been taking place in the last decade. The prudent and timely application of this technology will provide Army aviation the capability to prevail against a numerically superior enemy threat. The Army and NASA have exploited this technology explosion in the development and application of avionics systems integration technology for new and future aviation systems. A few selected Army avionics integration technology base efforts are discussed. Also discussed is the Avionics Integration Research Laboratory (AIRLAB) that NASA has established at Langley for research into the integration and validation of avionics systems, and evaluation of advanced technology in a total systems context.
Towards THz integrated photonics
Hübers, Heinz-Wilhelm
2010-01-01
The demonstration of an integrated terahertz transceiver featuring a quantum cascade laser and a Schottky diode mixer promises new applications for compact and convenient terahertz photonic instrumentation.
Extending Database Integration Technology
Buneman, Peter
1999-01-01
Formal approaches to the semantics of databases and database languages can have immediate and practical consequences in extending database integration technologies to include a vastly greater range...
Modularly Integrated MEMS Technology
Eyoum, Marie-Angie N
2006-01-01
Process design, development and integration to fabricate reliable MEMS devices on top of VLSI-CMOS electronics without damaging the underlying circuitry have been investigated throughout this dissertation...
Integrated Information Management (IIM)
McIlvain, Jason
2007-01-01
Information Technology is the core capability required to align our resources and increase our effectiveness on the battlefield by integrating and coordinating our preventative measures and responses...
Building integrated photovoltaic; Photovaltaique integre aux batiments
NONE
2004-01-01
Durable, modular and flexible in use, as demonstrated by the different case studies in this publication, photovoltaic can replace diverse building elements, from glass facades to weather proof roofs. This leaflet towards architects describes aesthetic, technical, economic and environmental interest of building integrated photovoltaic. (author)
Simplification of integrity constraints for data integration
Christiansen, Henning; Martinenghi, Davide
2004-01-01
, because either the global database is known to be consistent or suitable actions have been taken to provide consistent views. The present work generalizes simplification techniques for integrity checking in traditional databases to the combined case. Knowledge of local consistency is employed, perhaps...
Feynman integrals and hyperlogarithms
Panzer, Erik
2015-02-05
We study Feynman integrals in the representation with Schwinger parameters and derive recursive integral formulas for massless 3- and 4-point functions. Properties of analytic (including dimensional) regularization are summarized and we prove that in the Euclidean region, each Feynman integral can be written as a linear combination of convergent Feynman integrals. This means that one can choose a basis of convergent master integrals and need not evaluate any divergent Feynman graph directly. Secondly we give a self-contained account of hyperlogarithms and explain in detail the algorithms needed for their application to the evaluation of multivariate integrals. We define a new method to track singularities of such integrals and present a computer program that implements the integration method. As our main result, we prove the existence of infinite families of massless 3- and 4-point graphs (including the ladder box graphs with arbitrary loop number and their minors) whose Feynman integrals can be expressed in terms of multiple polylogarithms, to all orders in the ε-expansion. These integrals can be computed effectively with the presented program. We include interesting examples of explicit results for Feynman integrals with up to 6 loops. In particular we present the first exactly computed counterterm in massless φ{sup 4} theory which is not a multiple zeta value, but a linear combination of multiple polylogarithms at primitive sixth roots of unity (and divided by the √(3)). To this end we derive a parity result on the reducibility of the real- and imaginary parts of such numbers into products and terms of lower depth.
Feynman integrals and hyperlogarithms
Panzer, Erik
2015-01-01
We study Feynman integrals in the representation with Schwinger parameters and derive recursive integral formulas for massless 3- and 4-point functions. Properties of analytic (including dimensional) regularization are summarized and we prove that in the Euclidean region, each Feynman integral can be written as a linear combination of convergent Feynman integrals. This means that one can choose a basis of convergent master integrals and need not evaluate any divergent Feynman graph directly. Secondly we give a self-contained account of hyperlogarithms and explain in detail the algorithms needed for their application to the evaluation of multivariate integrals. We define a new method to track singularities of such integrals and present a computer program that implements the integration method. As our main result, we prove the existence of infinite families of massless 3- and 4-point graphs (including the ladder box graphs with arbitrary loop number and their minors) whose Feynman integrals can be expressed in terms of multiple polylogarithms, to all orders in the ε-expansion. These integrals can be computed effectively with the presented program. We include interesting examples of explicit results for Feynman integrals with up to 6 loops. In particular we present the first exactly computed counterterm in massless φ 4 theory which is not a multiple zeta value, but a linear combination of multiple polylogarithms at primitive sixth roots of unity (and divided by the √(3)). To this end we derive a parity result on the reducibility of the real- and imaginary parts of such numbers into products and terms of lower depth.
Non-canonical insights into the evolution of stars. 2
Harmanec, P.
1987-01-01
Simple arguments are presented to show that the interpretation of the observed semi-periodic light or radial-velocity variations of supergiants in terms of non-radial pulsations of these objects is not as straightforward as often believed. It is demonstrated that the observed semi-period luminosity-colour relation can also be derived under the assumption of rotational modulation or orbital motion in a binary system. Both these alternatives are investigated in some detail. The working hypothesis that at least some of the variable supergiants are in fact contacts or near-contacts of more massive components of unrecognized binary systems of low mass ratio seems to be worthy of a further study. (author). 2 figs., 2 tabs., 25 refs
Chemical Morphing of DNA Containing Four Noncanonical Bases.
Eremeeva, Elena; Abramov, Michail; Margamuljana, Lia; Rozenski, Jef; Pezo, Valerie; Marlière, Philippe; Herdewijn, Piet
2016-06-20
The ability of alternative nucleic acids, in which all four nucleobases are substituted, to replicate in vitro and to serve as genetic templates in vivo was evaluated. A nucleotide triphosphate set of 5-chloro-2'-deoxyuridine, 7-deaza-2'-deoxyadenosine, 5-fluoro-2'-deoxycytidine, and 7-deaza-2'deoxyguanosine successfully underwent polymerase chain reaction (PCR) amplification using templates of different lengths (57 or 525mer) and Taq or Vent (exo-) DNA polymerases as catalysts. Furthermore, a fully morphed gene encoding a dihydrofolate reductase was generated by PCR using these fully substituted nucleotides and was shown to transform and confer trimethoprim resistance to E. coli. These results demonstrated that fully modified templates were accurately read by the bacterial replication machinery and provide the first example of a long fully modified DNA molecule being functional in vivo. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Noncanonical thyroid hormone signaling mediates cardiometabolic effects in vivo
Hönes, G. Sebastian; Rakov, Helena; Logan, John
2017-01-01
Thyroid hormone (TH) and TH receptors (TRs) α and β act by binding to TH response elements (TREs) in regulatory regions of target genes. This nuclear signaling is established as the canonical or type 1 pathway for TH action. Nevertheless, TRs also rapidly activate intracellular second-messenger s...
The Danish Reportive Passive as a Non-Canonical Passive
Ørsnes, Bjarne
2013-01-01
Danish passive utterance and cognitive verbs allow a construction where the subject of an infinitival complement is raised: Peter siges at være bortrejst (‘Peter is said to be out of town’). Contrary to English, these verbs are not ECM-verbs or subject-to-object raising verbs in the active...
Noncanonical quantization-on the coexistence of particles and ghosts
Saller, H.
1988-01-01
Local interactions of quantized fields are sometimes parametrized with the aid of ghostlike degrees of freedom, e.g., in non-Abelian gauge theories. These ghosts do not necessarily lead to eigenstates of energy. Such a situation requires a discussion of the asymptotic boundary condition for the ghosts, leading to ghost propagation only for timelike distance. Coexisting particle and ghost degrees of freedom in one basic field operator allow the formulation of interactions for such a field without local ambiguities
Factorization of Behavioral Integrity
Li, Ximeng; Nielson, Flemming; Nielson, Hanne Riis
2015-01-01
We develop a bisimulation-based nonintereference property that describes the allowed dependencies between communication behaviors of different integrity levels. The property is able to capture all possible combinations of integrity levels for the “presence” and “content” of actual communications...
D. Naylor
1986-01-01
Full Text Available This paper establishes properties of a convolution type integral transform whose kernel is a Macdonald type Bessel function of zero order. An inversion formula is developed and the transform is applied to obtain the solution of some related integral equations.
Integrated Marketing Communications
Black, Jim
2004-01-01
Integration has become a cliche in enrollment management and student services circles. The term is used to describe everything from integrated marketing to seamless services. Often, it defines organizational structures, processes, student information systems, and even communities. In Robert Sevier's article in this issue of "College and…
Integrated Optical Circuit Engineering
Sriram, S.
1985-04-01
Implementation of single-mode optical fiber systems depends largely on the availability of integrated optical components for such functions as switching, multiplexing, and modulation. The technology of integrated optics is maturing very rapidly, and its growth justifies the optimism that now exists in the optical community.
Mesiar, Radko
2005-01-01
Roč. 28, č. 156 (2005), s. 365-370 ISSN 0165-0114 R&D Projects: GA ČR(CZ) GA402/04/1026 Institutional research plan: CEZ:AV0Z10750506 Keywords : fuzzy measures * fuzzy integral * regular fuzzy integral Subject RIV: BA - General Mathematics Impact factor: 1.039, year: 2005
Prokhorov, L.V.
1982-01-01
The properties of path integrals associated with the allowance for nonstandard terms reflecting the operator nature of the canonical variables are considered. Rules for treating such terms (''equivalence rules'') are formulated. Problems with a boundary, the behavior of path integrals under canonical transformations, and the problem of quantization of dynamical systems with constraints are considered in the framework of the method
Ethnic Minorities and Integration
Mérove Gijsberts
2005-01-01
There has been a great deal of discussion in the Netherlands recently about the integration of ethnic minorities. The tenor of that discussion is sombre: some observers speak of a 'multicultural drama', while others claim that the government's integration policy has failed completely. Recent
Backtracking Incremental Continuous Integration
T. van der Storm (Tijs); K. Kontogiannis (Kostas); C. Tjortjis; A. Winter
2008-01-01
htmlabstractFailing integration builds are show stoppers. Development activity is stalled because developers have to wait with integrating new changes until the problem is fixed and a successful build has been run. We show how backtracking can be used to mitigate the impact of build failures in the
Chang, Y.I.; Marchaterre, J.F.; Sevy, R.H.
1984-01-01
Key features of the IFR consist of a pool-type plant arrangement, a metal fuel-based core design, and an integral fuel cycle with colocated fuel cycle facility. Both the basic concept and the technology base have been demonstrated through actual integral cycle operation in EBR-II. This paper discusses the inherent safety characteristics of the IFR concept
Holst, Finn
2010-01-01
Evaluering af projektet Musik, Sprog og Integration, Søndermarkskolen, Horsens. Andenårsevaluering af et treårigt projekt.......Evaluering af projektet Musik, Sprog og Integration, Søndermarkskolen, Horsens. Andenårsevaluering af et treårigt projekt....
Kanonisk sikkerhed og integration
Larsen, Vibe; Øland, Trine
2006-01-01
Artiklen diskuterer, med indragelse af den lignende debat i andre europæiske lande, kulturkanonen i forhold til integration......Artiklen diskuterer, med indragelse af den lignende debat i andre europæiske lande, kulturkanonen i forhold til integration...
Rendtorff, Jacob Dahl
2015-01-01
Integrity can be defined in the following sense: Integrity accounts for the inviolability of the human being. Although originally a virtue of uncorrupted character, expressing uprightness, honesty, and good intentions, it has, like dignity, been universalized as a quality of the person as such...
Integral transformational coaching
Keizer, W.A.J.; Nandram, S.S.
2009-01-01
In Chap. 12, Keizer and Nandram present the concept of Integral Transformational Coaching based on the concept of Flow and its effects on work performance. Integral Transformational Coaching is a method that prevents and cures unhealthy stress and burnout. They draw on some tried and tested
Fogelman, Tatiana
Over the past fifteen years the district of Berlin-Marzahn became home to the largest concentration of post-Soviet migrants of German ancestry in the former East Germany. Drawing on my research in the district, including two of its integration projects for middle-aged, unemployed migrants, I...... examine these projects’ failed attempts to create spaces of encounter between the migrants and district’s long-term residents. In this presentation I focus specifically on the structural position of integration work (Integrationsarbeit) that creates first and foremost conditions of possibility for its...... temporal imaginaries underpinning the ideas of integration through encounter, as well as integration more broadly, I argue for reflexivity-centric public reformulations of both integration and encounter....
Retroviral integration: Site matters
Demeulemeester, Jonas; De Rijck, Jan
2015-01-01
Here, we review genomic target site selection during retroviral integration as a multistep process in which specific biases are introduced at each level. The first asymmetries are introduced when the virus takes a specific route into the nucleus. Next, by co‐opting distinct host cofactors, the integration machinery is guided to particular chromatin contexts. As the viral integrase captures a local target nucleosome, specific contacts introduce fine‐grained biases in the integration site distribution. In vivo, the established population of proviruses is subject to both positive and negative selection, thereby continuously reshaping the integration site distribution. By affecting stochastic proviral expression as well as the mutagenic potential of the virus, integration site choice may be an inherent part of the evolutionary strategies used by different retroviruses to maximise reproductive success. PMID:26293289
Neuroeconomics and Integrated Care
Larsen, Torben
2012-01-01
Background: Fragmented specialized care for the frail elderly as claimed by WHO needs horizontal integration across settings. The home of the patient seems to be a promising place to integrate hospital care, primary care and social services for high-risk discharges where the quality...... of rehabilitation makes a difference. Objective: The study aims to reveal how integrated home care may be organised to improve quality of care as compared to usual hospital care. Method: A qualitative case study of the use of a neuroeconomic model in relation to multidisciplianry collaboration on a RCT...... of integrated home care for stroke patients. Results: (1) The classical understanding of CNS is that of a dual system of ANS and Cortex. The new neuroeconomic understanding is that of a reciprocal balance of Limbic System (LS) and Neocortex (NC). This applies directly in favour of integrated homecare compared...
Hira, Anil; Amaya, Libardo
2003-01-01
Amidst the international movement to privatize and deregulate electricity and gas sectors of economies, the question of the integration of those sectors has been somewhat underestimated. In fact, the integration of energy markets across boundaries is occurring. We examine this process in three regions: Europe, Central America, and South America. We analyze the forces driving integration in each area, and estimate the prospects for progress. We take a close look at Nordpool, which is now the most integrated market in the world, to see if it can serve as a model for other regions. We close with a set of conditions that we suggest are necessary for a successful international integration of energy markets