Predicting vulnerabilities of North American shorebirds to climate change.

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Hector Galbraith

Full Text Available Despite an increase in conservation efforts for shorebirds, there are widespread declines of many species of North American shorebirds. We wanted to know whether these declines would be exacerbated by climate change, and whether relatively secure species might become at-risk species. Virtually all of the shorebird species breeding in the USA and Canada are migratory, which means climate change could affect extinction risk via changes on the breeding, wintering, and/or migratory refueling grounds, and that ecological synchronicities could be disrupted at multiple sites. To predict the effects of climate change on shorebird extinction risks, we created a categorical risk model complementary to that used by Partners-in-Flight and the U.S. Shorebird Conservation Plan. The model is based on anticipated changes in breeding, migration, and wintering habitat, degree of dependence on ecological synchronicities, migration distance, and degree of specialization on breeding, migration, or wintering habitat. We evaluated 49 species, and for 3 species we evaluated 2 distinct populations each, and found that 47 (90% taxa are predicted to experience an increase in risk of extinction. No species was reclassified into a lower-risk category, although 6 species had at least one risk factor decrease in association with climate change. The number of species that changed risk categories in our assessment is sensitive to how much of an effect of climate change is required to cause the shift, but even at its least sensitive, 20 species were at the highest risk category for extinction. Based on our results it appears that shorebirds are likely to be highly vulnerable to climate change. Finally, we discuss both how our approach can be integrated with existing risk assessments and potential future directions for predicting change in extinction risk due to climate change.

Migration in the balance : tight ecological margins and the changing fortunes of shorebird populations

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Piersma, Theunis; Boere, G.C.; Galbraith, C.A.; Stroud, D.A.

2006-01-01

Dependent as they are on rare and remote open habitats for breeding and survival, shorebirds connect continents and hemispheres with their individual movements. Although many of the wetland systems on which shorebirds rely, especially in the rich West, have now some form of protection, two case

Do tropical cyclones shape shorebird habitat patterns? Biogeoclimatology of snowy plovers in Florida.

Directory of Open Access Journals (Sweden)

Matteo Convertino

Full Text Available BACKGROUND: The Gulf coastal ecosystems in Florida are foci of the highest species richness of imperiled shoreline dependent birds in the USA. However environmental processes that affect their macroecological patterns, like occupancy and abundance, are not well unraveled. In Florida the Snowy Plover (Charadrius alexandrinus nivosus is resident along northern and western white sandy estuarine/ocean beaches and is considered a state-threatened species. METHODOLOGY/PRINCIPAL FINDINGS: Here we show that favorable nesting areas along the Florida Gulf coastline are located in regions impacted relatively more frequently by tropical cyclones. The odds of Snowy Plover nesting in these areas during the spring following a tropical cyclone impact are seven times higher compared to the odds during the spring following a season without a cyclone. The only intensity of a tropical cyclone does not appear to be a significant factor affecting breeding populations. CONCLUSIONS/SIGNIFICANCE: Nevertheless a future climate scenario featuring fewer, but more extreme cyclones could result in a decrease in the breeding Snowy Plover population and its breeding range. This is because the spatio-temporal frequency of cyclone events was found to significantly affect nest abundance. Due to the similar geographic range and habitat suitability, and no decrease in nest abundance of other shorebirds in Florida after the cyclone season, our results suggest a common bioclimatic feedback between shorebird abundance and tropical cyclones in breeding areas which are affected by cyclones.

Concentrations of 17 elements, including mercury, in the tissues, food and abiotic environment of Arctic shorebirds

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Hargreaves, Anna L., E-mail: alhargreaves@gmail.com [Calgary Zoo, Centre for Conservation Research, 1300 Zoo Rd NE, Calgary, AB, T2E 7V6 (Canada); Whiteside, Douglas P. [Calgary Zoo, Animal Health Centre, 1300 Zoo Rd NE, Calgary, AB, T2E 7V6 (Canada); University of Calgary, Department of Ecosystem and Public Health, Faculty of Veterinary Medicine, 2500 University Dr. NW, Calgary, AB, T2N 1N4 (Canada); Gilchrist, Grant [Carleton University, National Wildlife Research Centre, Ottawa, ON, KIA OH3 (Canada)

2011-09-01

Exposure to contaminants is one hypothesis proposed to explain the global decline in shorebirds, and is also an increasing concern in the Arctic. We assessed potential contaminants (As, Be, Cd, Co, Cr, Cu, Fe, Hg, Mn, Mo, Ni, Pb, Sb, Se, Tl, V, and Zn) at a shorebird breeding site in Nunavut, Canada. We compared element levels in soil, invertebrates and shorebird blood to assess evidence for bioconcentration and biomagnification within the Arctic-based food chain. We tested whether elements in blood, feathers and eggs of six shorebird species (Pluvialis squatarola, Calidris alpina, C. fuscicollis, Phalaropus fulicarius, Charadrius semipalmatus, and Arenaria interpres) were related to fitness endpoints: adult body condition, blood-parasite load, egg size, eggshell thickness, nest duration, and hatching success. To facilitate comparison to other sites, we summarise the published data on toxic metals in shorebird blood and egg contents. Element concentrations and invertebrate composition differed strongly among habitats, and habitat use and element concentrations differed among shorebird species. Hg, Se, Cd, Cu, and Zn bioconcentrated from soil to invertebrates, and Hg, Se and Fe biomagnified from invertebrates to shorebird blood. As, Ni, Pb, Co and Mn showed significant biodilution from soil to invertebrates to shorebirds. Soil element levels were within Canadian guidelines, and invertebrate Hg levels were below dietary levels suggested for the protection of wildlife. However, maximum Hg in blood and eggs approached levels associated with toxicological effects and Hg-pollution in other bird species. Parental blood-Hg was negatively related to egg volume, although the relationship varied among species. No other elements approached established toxicological thresholds. In conclusion, whereas we found little evidence that exposure to elements at this site is leading to the declines of the species studied, Hg, as found elsewhere in the Canadian Arctic, is of potential

Concentrations of 17 elements, including mercury, in the tissues, food and abiotic environment of Arctic shorebirds

International Nuclear Information System (INIS)

Hargreaves, Anna L.; Whiteside, Douglas P.; Gilchrist, Grant

2011-01-01

Exposure to contaminants is one hypothesis proposed to explain the global decline in shorebirds, and is also an increasing concern in the Arctic. We assessed potential contaminants (As, Be, Cd, Co, Cr, Cu, Fe, Hg, Mn, Mo, Ni, Pb, Sb, Se, Tl, V, and Zn) at a shorebird breeding site in Nunavut, Canada. We compared element levels in soil, invertebrates and shorebird blood to assess evidence for bioconcentration and biomagnification within the Arctic-based food chain. We tested whether elements in blood, feathers and eggs of six shorebird species (Pluvialis squatarola, Calidris alpina, C. fuscicollis, Phalaropus fulicarius, Charadrius semipalmatus, and Arenaria interpres) were related to fitness endpoints: adult body condition, blood-parasite load, egg size, eggshell thickness, nest duration, and hatching success. To facilitate comparison to other sites, we summarise the published data on toxic metals in shorebird blood and egg contents. Element concentrations and invertebrate composition differed strongly among habitats, and habitat use and element concentrations differed among shorebird species. Hg, Se, Cd, Cu, and Zn bioconcentrated from soil to invertebrates, and Hg, Se and Fe biomagnified from invertebrates to shorebird blood. As, Ni, Pb, Co and Mn showed significant biodilution from soil to invertebrates to shorebirds. Soil element levels were within Canadian guidelines, and invertebrate Hg levels were below dietary levels suggested for the protection of wildlife. However, maximum Hg in blood and eggs approached levels associated with toxicological effects and Hg-pollution in other bird species. Parental blood-Hg was negatively related to egg volume, although the relationship varied among species. No other elements approached established toxicological thresholds. In conclusion, whereas we found little evidence that exposure to elements at this site is leading to the declines of the species studied, Hg, as found elsewhere in the Canadian Arctic, is of potential

Inorganic and organic contaminants in Alaskan shorebird eggs.

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Saalfeld, David T; Matz, Angela C; McCaffery, Brian J; Johnson, Oscar W; Bruner, Phil; Lanctot, Richard B

2016-05-01

Many shorebird populations throughout North America are thought to be declining, with potential causes attributed to habitat loss and fragmentation, reduced prey availability, increased predation, human disturbance, and increased exposure to environmental pollutants. Shorebirds may be particularly vulnerable to contaminant exposure throughout their life cycle, as they forage primarily on invertebrates in wetlands, where many contaminants accumulate disproportionately in the sediments. Therefore, it is important to document and monitor shorebird populations thought to be at risk and assess the role that environmental contaminants may have on population declines. To investigate potential threats and provide baseline data on shorebird contaminant levels in Alaskan shorebirds, contaminant concentrations were evaluated in shorebird eggs from 16 species residing in seven geographic distinct regions of Alaska. Similar to previous studies, low levels of most inorganic and organic contaminants were found, although concentrations of several inorganic and organic contaminants were higher than those of previous studies. For example, elevated strontium levels were observed in several species, especially black oystercatcher (Haematopus bachmani) sampled in Prince William Sound, Alaska. Additionally, contaminant concentrations varied among species, with significantly higher concentrations of inorganic contaminants found in eggs of pectoral sandpiper (Calidris melanotos), semipalmated sandpiper (Calidris pusilla), black oystercatcher, and bar-tailed godwit (Limosa lapponica). Similarly, significantly higher concentrations of some organic contaminants were found in the eggs of American golden plover (Pluvialis dominica), black-bellied plover (Pluvialis squatarola), pacific golden plover (Pluvialis fulva), bar-tailed godwit, and semipalmated sandpiper. Despite these elevated levels, current concentrations of contaminants in shorebird eggs suggest that breeding environments are

A smartphone app and analysis framework for rapidly characterizing and predicting shorebird habitat

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Thieler, E. R.; Zeigler, S. L.; Plant, N. G.; Gutierrez, B.; Winslow, L. A.; Hines, M. K.; Read, J. S.; Walker, J. I.

2016-12-01

We developed a smartphone application called iPlover as a distributed data collection system to gather synoptic observations of shorebird habitat selection preferences, and a Bayesian network that exploits the data to predict habitat suitability. We tested this approach to modeling habitat suitability for the federally listed piping plover (Charadrius melodus) on coastal beaches and barrier islands along 1500 km of coast from North Carolina to Maine, USA. Using agile software development approaches, the iPlover application was conceived, developed and deployed in just a few months following Hurricane Sandy in 2012. This application supported collaborative efforts of nearly 100 stakeholders, resulting in over 2000 data points describing piping plover habitat selection patterns. The data were analyzed in a Bayesian network to evaluate the probability that a specific combination of habitat variables is associated with a nesting site. Subsequent testing shows that iPlover data are robust to variability in user classification and that the Bayesian network has a high level of predictive accuracy. Our work addresses a variety of scientific problems in understanding and managing dynamic coastal landscapes for beach-dependent species that require biological and geological data that (1) span the range of relevant environments and habitats, (2) can be updated seasonally to interannually, and (3) capture spatial detail. It is difficult to acquire such data; the data often have limited focus due to resource constraints, can be challenging to coordinate between different regions, are collected by non-specialists, or lack observational uniformity. Furthermore, associated data analysis techniques are often limited in their ability to consider new information as data are collected from additional study sites and updated. We present examples of how this approach can be used to map past, present, and future habitat suitability for sites of interest. We also describe lessons learned

Collaborative approaches to the evolution of migration and the development of science-based conservation in shorebirds

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Harrington, Brian A.; Brown, S.; Corven, James; Bart, Jonathan

2002-01-01

Shorebirds are among the most highly migratory creatures on earth. Both the study of their ecology and ongoing efforts to conserve their populations must reflect this central aspect of their biology. Many species of shorebirds use migration and staging sites scattered throughout the hemisphere to complete their annual migrations between breeding areas and nonbreeding habitats (Morrison 1984). The vast distances between habitats they use pose significant challenges for studying their migration ecology. At the same time, the large number of political boundaries shorebirds cross during their epic migrations create parallel challenges for organizations working on their management and conservation.Nebel et al. (2002) represent a collaborative effort to understand the conservation implications of Western Sandpiper (Calidris mauri) migration ecology on a scale worthy of this highly migratory species. The data sets involved in the analysis come from four U.S. states, two Canadian provinces, and a total of five nations. Only by collaborating on this historic scale were the authors able to assemble the information necessary to understand important aspects of the migration ecology of this species, and the implications for conservation of the patterns they discovered.Collaborative approaches to shorebird migration ecology developed slowly over several decades. The same period also saw the creation of large-scale efforts to monitor and conserve shorebirds. This overview first traces the history of the study of migration ecology of shorebirds during that fertile period, and then describes the monitoring and protection efforts that have been developed in an attempt to address the enormous issues of scale posed by shorebird migration ecology and conservation.

Concentrations of 17 elements, including mercury, in the tissues, food and abiotic environment of Arctic shorebirds.

Science.gov (United States)

Hargreaves, Anna L; Whiteside, Douglas P; Gilchrist, Grant

2011-09-01

Exposure to contaminants is one hypothesis proposed to explain the global decline in shorebirds, and is also an increasing concern in the Arctic. We assessed potential contaminants (As, Be, Cd, Co, Cr, Cu, Fe, Hg, Mn, Mo, Ni, Pb, Sb, Se, Tl, V, and Zn) at a shorebird breeding site in Nunavut, Canada. We compared element levels in soil, invertebrates and shorebird blood to assess evidence for bioconcentration and biomagnification within the Arctic-based food chain. We tested whether elements in blood, feathers and eggs of six shorebird species (Pluvialis squatarola, Calidris alpina, C. fuscicollis, Phalaropus fulicarius, Charadrius semipalmatus, and Arenaria interpres) were related to fitness endpoints: adult body condition, blood-parasite load, egg size, eggshell thickness, nest duration, and hatching success. To facilitate comparison to other sites, we summarise the published data on toxic metals in shorebird blood and egg contents. Element concentrations and invertebrate composition differed strongly among habitats, and habitat use and element concentrations differed among shorebird species. Hg, Se, Cd, Cu, and Zn bioconcentrated from soil to invertebrates, and Hg, Se and Fe biomagnified from invertebrates to shorebird blood. As, Ni, Pb, Co and Mn showed significant biodilution from soil to invertebrates to shorebirds. Soil element levels were within Canadian guidelines, and invertebrate Hg levels were below dietary levels suggested for the protection of wildlife. However, maximum Hg in blood and eggs approached levels associated with toxicological effects and Hg-pollution in other bird species. Parental blood-Hg was negatively related to egg volume, although the relationship varied among species. No other elements approached established toxicological thresholds. In conclusion, whereas we found little evidence that exposure to elements at this site is leading to the declines of the species studied, Hg, as found elsewhere in the Canadian Arctic, is of potential

Effects of tidal cycles on shorebird distribution and foraging behaviour in a coastal tropical wetland: Insights for carrying capacity assessment

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Fonseca, Juanita; Basso, Enzo; Serrano, David; Navedo, Juan G.

2017-11-01

Wetland loss has driven negative effects on biodiversity by a reduction in potential available habitats, directly impacting wetland-dependent species such as migratory shorebirds. At coastal areas where tidal cycles can restrict food access, the degree to which density of foraging birds is mediated by conspecific abundance or by the available areas is crucial to understanding patterns of bird distribution and wetland carrying capacity. We used the bathymetry of two sectors modeled with two numerical matrices to determine the availability of intertidal foraging areas in relation to tidal level (spring and neap tides), and this information was used to estimate shorebird density and foraging activity throughout the low-tide cycle in a tropical coastal lagoon in northwestern Mexico. Relative to spring tides, an 80% reduction in available foraging areas occurred during neap tides. Overall shorebird abundance was significantly reduced during neap tide periods, with differences between species. Densities of shorebirds increased during neap tides, particularly in one sector, and remained similar throughout the low-tide period (i.e. 4 h) either during spring or neap tides. Time spent foraging was consistently lower during neap-tides relative to spring-tides, especially for Long-billed curlew (44% reduction), Willet (37% reduction) and Black-necked stilt (29% reduction). These decreases in foraging activity when available habitats became reduced can hamper the opportunities of migratory shorebirds to reach their daily energy requirements to survive during the non-breeding season. This study shows that when intertidal habitats are severely reduced an important fraction of shorebird populations would probably be forced to find alternative areas to forage or increase foraging time during the night. Serving an essential function as top-predators, these results can have important implications on carrying capacity assessment for shorebirds at coastal wetlands.

Monitoring species richness and abundance of shorebirds in the western Great Basin

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Warnock, Nils; Haig, Susan M.; Oring, Lewis W.

1998-01-01

Broad-scale avian surveys have been attempted within North America with mixed results. Arid regions, such as the Great Basin, are often poorly sampled because of the vastness of the region, inaccessibility of sites, and few ornithologists. In addition, extreme variability in wetland habitat conditions present special problems for conducting censuses of species inhabiting these areas. We examined these issues in assessing multi-scale shorebird (order: Charadriiformes) censuses conducted in the western Great Basin from 1992-1997. On ground surveys, we recorded 31 species of shorebirds, but were unable to accurately estimate population size. Conversely, on aerial surveys we were able to estimate regional abundance of some shorebirds, but were unable to determine species diversity. Aerial surveys of three large alkali lakes in Oregon (Goose, Summer, and Abert Lakes) revealed > 300,000 shorebirds in one year of this study, of which 67% were American Avocets (Recurvirostra americana) and 30% phalaropes (Phalaropus spp.). These lakes clearly meet Western Hemisphere Shorebird Reserve Network guidelines for designation as important shorebird sites. Based upon simulations of our monitoring effort and the magnitude and variation of numbers of American Avocets, detection of S-10% negative declines in populations of these birds would take a minimum of 7-23 years of comparable effort. We conclude that a combination of ground and aerial surveys must be conducted at multiple sites and years and over a large region to obtain an accurate picture of the diversity, abundance, and trends of shorebirds in the western Great Basin.

Contributions of Arctic PRISM to monitoring western hemispheric shorebirds

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Skagen, Susan K.; Smith, Paul A.; Andres, Brad A.; Donaldson, Garry; Brown, Stephen

2012-01-01

Long-term monitoring of populations is of paramount importance to understanding responses oforganisms to global environmental change and to evaluating whether conservation practices are yielding intended results through time (Wiens 2009). The population status of many shorebird species, the focus of this volume, remain poorly known. Long-distance migrant shorebirds have proven particularly difficult to monitor, in part because of their highly migratory nature and ranges that extend into highly inaccessible regions. As migrant shorebirds travel the length of the hemisphere, they congregate and disperse in ways that vary among species, locations, and years, presenting serious challenges to designing and implementing monitoring programs. Rigorous field and quantitative methods that estimate population size and monitor trends are vitally needed to direct and evaluate effective conservation measures. Many management efforts depend on unbiased population size estimates; for example, the shorebird conservation plans for both Canada and the United States seek to restore populations to levels calculated for the 1970s based on the best information available from existing surveys. Further, federal wildlife agencies within the United States and Canada have mandates to understand the state of their nations' resources under various conventions for the protection of migratory birds. Accurate estimates of population size are vital statistics for a variety of conservation activities, such as prioritizing species for conservation action and setting management targets. Areas of essential habitat, such as those designated under the Western Hemisphere Shorebird Reserve Network, the Important Bird Areas program of BirdLife International and the National Audubon Society, or Canada's National Wildlife Areas program, are all evaluated on the basis ofproportions of species' populations which they contain. The size, and trends in size, ofa species' population are considered key information

Foreword: Contributions of Arctic PRISM to monitoring western hemispheric shorebirds

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Skagen, Susan K.; Smith, Paul A.; Andres, Brad A.; Donaldson, Garry; Brown, Stephen; Bart, Jonathan R.; Johnston, Victoria H.

2012-01-01

Long-term monitoring of populations is of paramount importance to understanding responses of organisms to global environmental change and to evaluating whether conservation practices are yielding intended results through time (Wiens 2009). The population status of many shorebird species, the focus of this volume, remain poorly known. Long-distance migrant shorebirds have proven particularly difficult to monitor, in part because of their highly inaccessible regions. As migrant shorebirds travel the length of the hemisphere, the congregate and disperse in ways that vary among species, locations, and years, presenting serious challenges to designing and implementing monitoring programs. Rigorous field and quantitative methods that estimate population size and monitor trends are vitally needed to direct and evaluate effective conservation measures. Many management efforts depend on unbiased population size estimates; for examples, the shorebird conservation plans for both Canada and the United States seek to restore populations to levels calculated for the 1970s based on the best information available from existing surveys. Further, federal wildlife agencies within the United States and Canada have mandates to understand the state of their nations' resources under various conventions for the protection of migratory birds. Accurate estimates of population size are vital statistics for a variety of conservation activities, such as prioritizing species for conservation action and setting management targets. Areas of essential habitat, such as those designated under the Western Hemisphere Shorebird Reserve Network, the Important Bird Areas program of BirdLife Internationals and the National Audubon Society, or Canada's National Wildlife Areas program, are all evaluated on the basis of proportions of species' populations which they contain. The size, and trends in size, of a species' population are considered key information for assessing its vulnerability and subsequent

Molluscs of an intertidal soft-sediment area in China: Does overfishing explain a high density but low diversity community that benefits staging shorebirds?

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Yang, H-Y; Chen, B.; Piersma, T.; Zhang, Z.; Ding, C.

2016-01-01

The YellowSea is a key staging ground for shorebirds that migrate fromAustralasia to the Arctic each spring. A lotof attention has been paid to the impact of habitat loss due to land reclamation on shorebird survival, but any effectsof overfishing of coastal resources are unclear. In this study, the

Exposure of nonbreeding migratory shorebirds to cholinesterase-inhibiting contaminants in the western hemisphere

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Strum, K.M.; Hooper, M.J.; Johnson, K.A.; Lanctot, Richard B.; Zaccagnini, M.E.; Sandercock, B.K.

2010-01-01

Migratory shorebirds frequently forage and roost in agricultural habitats, where they may be exposed to cholinesterase-inhibiting pesticides. Exposure to organophosphorus and carbamate compounds, common anti-cholinesterases, can cause sublethal effects, even death. To evaluate exposure of migratory shorebirds to organophosphorus and carbamates, we sampled birds stopping over during migration in North America and wintering in South America. We compared plasma cholinesterase activities and body masses of individuals captured at sites with no known sources of organophosphorus or carbamates to those captured in agricultural areas where agrochemicals were recommended for control of crop pests. In South America, plasma acetylcholinesterase and butyrylcholinesterase activity in Buff-breasted Sandpipers was lower at agricultural sites than at reference sites, indicating exposure to organophosphorus and carbamates. Results of plasma cholinesterase reactivation assays and foot-wash analyses were inconclusive. A meta-analysis of six species revealed no widespread effect of agricultural chemicals on cholinesterase activity. however, four of six species were negative for acetylcholinesterase and one of six for butyrylcholinesterase, indicating negative effects of pesticides on cholinesterase activity in a subset of shorebirds. Exposure to cholinesterase inhibitors can decrease body mass, but comparisons between treatments and hemispheres suggest that agrochemicals did not affect migratory shorebirds' body mass. Our study, one of the first to estimate of shorebirds' exposure to cholinesterase-inhibiting pesticides, suggests that shorebirds are being exposed to cholinesterase- inhibiting pesticides at specific sites in the winter range but not at migratory stopover sites. future research should examine potential behavioral effects of exposure and identify other potential sitesand levels of exposure. ?? The Cooper Ornithological Society 2010.

Molluscs of an intertidal soft-sediment area in China: Does overfishing explain a high density but low diversity community that benefits staging shorebirds?

NARCIS (Netherlands)

Yang, Hong-Yan; Chen, Bing; Piersma, Theunis; Zhang, Zhengwang; Ding, Changqing

2016-01-01

The Yellow Sea is a key staging ground for shorebirds that migrate from Australasia to the Arctic each spring. A lot of attention has been paid to the impact of habitat loss due to land reclamation on shorebird survival, but any effects of overfishing of coastal resources are unclear. In this study,

Population variation in isotopic composition of shorebird feathers: Implications for determining molting grounds

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Torres-Dowdall, J.; Farmer, A.H.; Bucher, E.H.; Rye, R.O.; Landis, G.

2009-01-01

Stable isotope analyses have revolutionized the study of migratory connectivity. However, as with all tools, their limitations must be understood in order to derive the maximum benefit of a particular application. The goal of this study was to evaluate the efficacy of stable isotopes of C, N, H, O and S for assigning known-origin feathers to the molting sites of migrant shorebird species wintering and breeding in Argentina. Specific objectives were to: 1) compare the efficacy of the technique for studying shorebird species with different migration patterns, life histories and habitat-use patterns; 2) evaluate the grouping of species with similar migration and habitat use patterns in a single analysis to potentially improve prediction accuracy; and 3) evaluate the potential gains in prediction accuracy that might be achieved from using multiple stable isotopes. The efficacy of stable isotope ratios to determine origin was found to vary with species. While one species (White-rumped Sandpiper, Calidris fuscicollis) had high levels of accuracy assigning samples to known origin (91% of samples correctly assigned), another (Collared Plover, Charadrius collaris) showed low levels of accuracy (52% of samples correctly assigned). Intra-individual variability may account for this difference in efficacy. The prediction model for three species with similar migration and habitat-use patterns performed poorly compared with the model for just one of the species (71% versus 91% of samples correctly assigned). Thus, combining multiple sympatric species may not improve model prediction accuracy. Increasing the number of stable isotopes in the analyses increased the accuracy of assigning shorebirds to their molting origin, but the best combination - involving a subset of all the isotopes analyzed - varied among species.

Optimal management of a multispecies shorebird flyway under sea-level rise.

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Iwamura, Takuya; Fuller, Richard A; Possingham, Hugh P

2014-12-01

Every year, millions of migratory shorebirds fly through the East Asian-Australasian Flyway between their arctic breeding grounds and Australasia. This flyway includes numerous coastal wetlands in Asia and the Pacific that are used as stopover sites where birds rest and feed. Loss of a few important stopover sites through sea-level rise (SLR) could cause sudden population declines. We formulated and solved mathematically the problem of how to identify the most important stopover sites to minimize losses of bird populations across flyways by conserving land that facilitates upshore shifts of tidal flats in response to SLR. To guide conservation investment that minimizes losses of migratory bird populations during migration, we developed a spatially explicit flyway model coupled with a maximum flow algorithm. Migratory routes of 10 shorebird taxa were modeled in a graph theoretic framework by representing clusters of important wetlands as nodes and the number of birds flying between 2 nodes as edges. We also evaluated several resource allocation algorithms that required only partial information on flyway connectivity (node strategy, based on the impacts of SLR at nodes; habitat strategy, based on habitat change at sites; population strategy, based on population change at sites; and random investment). The resource allocation algorithms based on flyway information performed on average 15% better than simpler allocations based on patterns of habitat loss or local bird counts. The Yellow Sea region stood out as the most important priority for effective conservation of migratory shorebirds, but investment in this area alone will not ensure the persistence of species across the flyway. The spatial distribution of conservation investments differed enormously according to the severity of SLR and whether information about flyway connectivity was used to guide the prioritizations. With the rapid ongoing loss of coastal wetlands globally, our method provides insight into

Do Tropical Cyclones Shape Shorebird Habitat Patterns? Biogeoclimatology of Snowy Plovers in Florida

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2011-01-12

and federal lands in Florida that act as hotspots of biodiversity . While we state a causal interannual relationship between TC and SP abundance in the...macroecological relationships between species and climatic features is very important to understand the response of biodiversity under future climate change...and infrastructures, however they shape ecosystems [30] and assist in maintaining shorebird biodiversity patterns, including the abundance and range of

Investigating avian influenza infection hotspots in old-world shorebirds.

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Nicolas Gaidet

Full Text Available Heterogeneity in the transmission rates of pathogens across hosts or environments may produce disease hotspots, which are defined as specific sites, times or species associations in which the infection rate is consistently elevated. Hotspots for avian influenza virus (AIV in wild birds are largely unstudied and poorly understood. A striking feature is the existence of a unique but consistent AIV hotspot in shorebirds (Charadriiformes associated with a single species at a specific location and time (ruddy turnstone Arenaria interpres at Delaware Bay, USA, in May. This unique case, though a valuable reference, limits our capacity to explore and understand the general properties of AIV hotspots in shorebirds. Unfortunately, relatively few shorebirds have been sampled outside Delaware Bay and they belong to only a few shorebird families; there also has been a lack of consistent oropharyngeal sampling as a complement to cloacal sampling. In this study we looked for AIV hotspots associated with other shorebird species and/or with some of the larger congregation sites of shorebirds in the old world. We assembled and analysed a regionally extensive dataset of AIV prevalence from 69 shorebird species sampled in 25 countries across Africa and Western Eurasia. Despite this diverse and extensive coverage we did not detect any new shorebird AIV hotspots. Neither large shorebird congregation sites nor the ruddy turnstone were consistently associated with AIV hotspots. We did, however, find a low but widespread circulation of AIV in shorebirds that contrast with the absence of AIV previously reported in shorebirds in Europe. A very high AIV antibody prevalence coupled to a low infection rate was found in both first-year and adult birds of two migratory sandpiper species, suggesting the potential existence of an AIV hotspot along their migratory flyway that is yet to be discovered.

Urban Marine Habitat Use by Waterbirds in Narragansett Bay

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We examined patterns of habitat use by waterbirds (waterfowl, shorebirds, and wading birds) at a series of urban and non-urban marine habitats in Narragansett Bay during 2005-2007. Average waterbird abundance at urban sites was significantly higher than at rural sites (304 ± 59.7...

An evaluation of intertidal feeding habitats from a shorebird perspective: Towards relevant comparisons between temperate and tropical mudflats

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Piersma, Theunis; de Goeij, Petra; Tulp, Ingrid

Macrozoobenthic communities of intertidal soft sediments are reviewed worldwide from the perspective of a mollusc-eating shorebird species. Based on 19 sites, total biomass figures varied between 5 and 80 g AFDM per m 2 (average 24 g AFDM per m 2); no latitudinal trends are apparent. The contribution made by bivalves and gastropods varies between 1% and 99%, north-temperate intertidal flats having relatively more molluscs than tropical flats. Intertidal flats in the tropics contain a greater variety of taxa, with brachiopods in Indonesia and echinoderms in northwest Australia contributing significantly to biomass only there. Limits to the occurrence of avian predators of intertidal benthos are set by the harvestable fraction of the biomass on offer and the costs of living at a particular site. No systematic differences in the harvestable fraction of the total mollusc-biomass for a worldwide occurring shorebird species specializing on molluscs (knots Calidris canutus) were apparent between temperate and tropical intertidal areas, in spite of large differences in maintenance metabolism incurred by these birds. The harvestable fractions of bivalves in the two West African areas (Banc d'Arguin, Mauritania and Guinea-Bissau) tended to be high (23-84% of total biomass in six species), they were relatively low (2-52% in five species) in the temperate Wadden Sea and the tropical northwest Australian site. Harvestable biomass determines the intake rate of shorebirds, as illustrated by functional-response curves of knots feeding on two bivalves species. We argue that the collection of information on size-depth relationships along with faunal and biomass surveys at a range of sites is bound to greatly increase our understanding of both the biology of tidal-flat invertebrates and the resource base underpinning the spectacular seasonal migrations of shorebirds.

A comprehensive monitoring program for North American shorebirds

Science.gov (United States)

Howe, Marshall; Bart, Jon; Brown, Stephen; Elphick, Chris; Gill, Robert E.; Harrington, Brian A.; Hickey, Catherine; Morrison, Guy; Skagen, Susan K.; Warnock, Nils

2000-01-01

Anthropogenic changes to the biosphere, including widespread degradation and losses of habitats and ecosystems, are causing rapid and profound changes to bird and other wildlife populations throughout the world. Such changes have led to increasing risks and rates of extinction. As a consequence, information on how bird populations are changing is becoming increasingly important to wildlife conservationists and managers. Early detection of population change is crucial for setting wildlife planning and management priorities. For example, information on population size, population vulnerability, and population change has been central to international conservation strategies such as the Ramsar Convention, the Western Hemisphere (Bonn) Convention, and the Western Hemisphere Shorebird Reserve Network. Measuring population size or change is also crucial for evaluating the effectiveness of population management programs implemented by wildlife agencies both locally and regionally.Although the concept of determining population size is simple, practical difficulties can be enormous and costly to overcome. In the United States, $4 billion will be spent in year 2000 to census the human population, possibly one of the most easily counted of all vertebrates. By contrast, the portion of the FY 2000 budget of the U.S. Department of the Interior allotted for tracking populations of all migratory birds (> 600 species) is less than $5 million (.0125% of the human census figure). This falls far short of the amount required to provide adequate, science-based information about bird populations and population change to wildlife managers.The gap between current ability and need is especially noteworthy for shorebirds. There are 72 species, subspecies, or distinct populations of shorebirds in North America. Even though most of these have received less conservation attention than such groups as waterfowl, colonial waterbirds, or songbirds, recent independent evaluation of data collected for

Novel coronavirus and astrovirus in Delaware Bay shorebirds.

Directory of Open Access Journals (Sweden)

Kirsi S Honkavuori

Full Text Available Wild birds are an important but to some extent under-studied reservoir for emerging pathogens. We used unbiased sequencing methods for virus discovery in shorebird samples from the Delaware Bay, USA; an important feeding ground for thousands of migratory birds.Analysis of shorebird fecal samples indicated the presence of a novel astrovirus and coronavirus. A sanderling sample yielded sequences with distant homology to avian nephritis virus 1, an astrovirus associated with acute nephritis in poultry. A ruddy turnstone sample yielded sequences with homology to deltacoronaviruses.Our findings highlight shorebirds as a virus reservoir and the need to closely monitor wild bird populations for the emergence of novel virus variants.

Wetland Plant Guide for Assessing Habitat Impacts of Real-Time Salinity Management

OpenAIRE

Quinn, Nigel W.T.; Feldmann, Sara A.

2004-01-01

This wetland plant guide was developed to aid moist soil plant identification and to assist in the mapping of waterfowl and shorebird habitat in the Grassland Water District and surrounding wetland areas. The motivation for this habitat mapping project was a concern that real-time salinity management of wetland drainage might have long-term consequences for wildfowl habitat health -- changes in wetland drawdown schedules might, over the long term, lead to increased soil salinity and othe...

A horizon scanning assessment of current and potential future threats to migratory shorebirds

Science.gov (United States)

Sutherland, William J.; Alves, José A.; Amano, Tatsuya; Chang, Charlotte H.; Davidson, Nicholas C.; Finlayson, C. Max; Gill, Jennifer A.; Gill, Robert E.; González, Patricia M.; Gunnarsson, Tómas Grétar; Kleijn, David; Spray, Chris J.; Székely, Tamás; Thompson, Des B.A.

2012-01-01

We review the conservation issues facing migratory shorebird populations that breed in temperate regions and use wetlands in the non-breeding season. Shorebirds are excellent model organisms for understanding ecological, behavioural and evolutionary processes and are often used as indicators of wetland health. A global team of experienced shorebird researchers identified 45 issues facing these shorebird populations, and divided them into three categories (natural, current anthropogenic and future issues). The natural issues included megatsunamis, volcanoes and regional climate changes, while current anthropogenic threats encompassed agricultural intensification, conversion of tidal flats and coastal wetlands by human infrastructure developments and eutrophication of coastal systems. Possible future threats to shorebirds include microplastics, new means of recreation and infectious diseases. We suggest that this review process be broadened to other taxa to aid the identification and ranking of current and future conservation actions.

Key features of intertidal food webs that support migratory shorebirds.

Directory of Open Access Journals (Sweden)

Blanche Saint-Béat

Full Text Available The migratory shorebirds of the East Atlantic flyway land in huge numbers during a migratory stopover or wintering on the French Atlantic coast. The Brouage bare mudflat (Marennes-Oléron Bay, NE Atlantic is one of the major stopover sites in France. The particular structure and function of a food web affects the efficiency of carbon transfer. The structure and functioning of the Brouage food web is crucial for the conservation of species landing within this area because it provides sufficient food, which allows shorebirds to reach the north of Europe where they nest. The aim of this study was to describe and understand which food web characteristics support nutritional needs of birds. Two food-web models were constructed, based on in situ measurements that were made in February 2008 (the presence of birds and July 2008 (absence of birds. To complete the models, allometric relationships and additional data from the literature were used. The missing flow values of the food web models were estimated by Monte Carlo Markov Chain--Linear Inverse Modelling. The flow solutions obtained were used to calculate the ecological network analysis indices, which estimate the emergent properties of the functioning of a food-web. The total activities of the Brouage ecosystem in February and July are significantly different. The specialisation of the trophic links within the ecosystem does not appear to differ between the two models. In spite of a large export of carbon from the primary producer and detritus in winter, the higher recycling leads to a similar retention of carbon for the two seasons. It can be concluded that in February, the higher activity of the ecosystem coupled with a higher cycling and a mean internal organization, ensure the sufficient feeding of the migratory shorebirds.

Gulf-Wide Information System, Environmental Sensitivity Index Shorebird Database, Geographic NAD83, LDWF (2001) [esi_shorebird_LDWF_2001

Data.gov (United States)

Louisiana Geographic Information Center — This data set contains sensitive biological resource data for shorebird species in coastal Louisiana. Vector polygons represent concentration areas and "hotspots"...

A supertree approach to shorebird phylogeny

Directory of Open Access Journals (Sweden)

Thomas Gavin H

2004-08-01

Full Text Available Abstract Background Order Charadriiformes (shorebirds is an ideal model group in which to study a wide range of behavioural, ecological and macroevolutionary processes across species. However, comparative studies depend on phylogeny to control for the effects of shared evolutionary history. Although numerous hypotheses have been presented for subsets of the Charadriiformes none to date include all recognised species. Here we use the matrix representation with parsimony method to produce the first fully inclusive supertree of Charadriiformes. We also provide preliminary estimates of ages for all nodes in the tree. Results Three main lineages are revealed: i the plovers and allies; ii the gulls and allies; and iii the sandpipers and allies. The relative position of these clades is unresolved in the strict consensus tree but a 50% majority-rule consensus tree indicates that the sandpiper clade is sister group to the gulls and allies whilst the plover group is placed at the base of the tree. The overall topology is highly consistent with recent molecular hypotheses of shorebird phylogeny. Conclusion The supertree hypothesis presented herein is (to our knowledge the only complete phylogenetic hypothesis of all extant shorebirds. Despite concerns over the robustness of supertrees (see Discussion, we believe that it provides a valuable framework for testing numerous evolutionary hypotheses relating to the diversity of behaviour, ecology and life-history of the Charadriiformes.

Avian influenza virus ecology in Iceland shorebirds: intercontinental reassortment and movement

Science.gov (United States)

Hall, Jeffrey S.; Hallgrimsson, Gunnar Thor; Suwannanarn, Kamol; Sreevatsen, Srinand; Ip, Hon S.; TeSlaa, Joshua L.; Nashold, Sean W.; Dusek, Robert J.

2014-01-01

Shorebirds are a primary reservoir of avian influenza viruses (AIV). We conducted surveillance studies in Iceland shorebird populations for 3 years, documenting high serological evidence of AIV exposure in shorebirds, primarily in Ruddy Turnstones (Arenaria interpres; seroprevalence = 75%). However, little evidence of virus infection was found in these shorebird populations and only two turnstone AIVs (H2N7; H5N1) were able to be phylogenetically examined. These analyses showed that viruses from Iceland shorebirds were primarily derived from Eurasian lineage viruses, yet the H2 hemagglutinin gene segment was from a North American lineage previously detected in a gull from Iceland the previous year. The H5N1 virus was determined to be low pathogenic, however the PB2 gene was closely related to the PB2 from highly pathogenic H5N1 isolates from China. Multiple lines of evidence suggest that the turnstones were infected with at least one of these AIV while in Iceland and confirm Iceland as an important location where AIV from different continents interact and reassort, creating new virus genomes. Mounting data warrant continued surveillance for AIV in wild birds in the North Atlantic, including Canada, Greenland, and the northeast USA to determine the risks of new AI viruses and their intercontinental movement in this region.

Avian influenza virus ecology in Iceland shorebirds: intercontinental reassortment and movement.

Science.gov (United States)

Hall, Jeffrey S; Hallgrimsson, Gunnar Thor; Suwannanarn, Kamol; Sreevatsen, Srinand; Ip, Hon S; Magnusdottir, Ellen; TeSlaa, Joshua L; Nashold, Sean W; Dusek, Robert J

2014-12-01

Shorebirds are a primary reservoir of avian influenza viruses (AIV). We conducted surveillance studies in Iceland shorebird populations for 3 years, documenting high serological evidence of AIV exposure in shorebirds, primarily in Ruddy Turnstones (Arenaria interpres; seroprevalence=75%). However, little evidence of virus infection was found in these shorebird populations and only two turnstone AIVs (H2N7; H5N1) were able to be phylogenetically examined. These analyses showed that viruses from Iceland shorebirds were primarily derived from Eurasian lineage viruses, yet the H2 hemagglutinin gene segment was from a North American lineage previously detected in a gull from Iceland the previous year. The H5N1 virus was determined to be low pathogenic, however the PB2 gene was closely related to the PB2 from highly pathogenic H5N1 isolates from China. Multiple lines of evidence suggest that the turnstones were infected with at least one of these AIV while in Iceland and confirm Iceland as an important location where AIV from different continents interact and reassort, creating new virus genomes. Mounting data warrant continued surveillance for AIV in wild birds in the North Atlantic, including Canada, Greenland, and the northeast USA to determine the risks of new AI viruses and their intercontinental movement in this region. Published by Elsevier B.V.

Predicting shorebird mortality and population size under different regimes of shellfishery management

NARCIS (Netherlands)

Stillman, R.A.; Goss-Custard, J.D.; West, A.D.; V. dit Durell, le S.E.A.; McGrorty, S.; Caldow, R.W.G.; Norris, K.J.; Johnstone, I.G.; Ens, B.J.; Meer, van der J.; Triplet, P.

2001-01-01

Human interests often conflict with those of wildlife. In the coastal zone humans often exploit shellfish populations that would otherwise provide food for populations of shorebirds (Charadrii). There has been considerable debate on the consequences of shellfishing for the survival of shorebirds,

Molluscs of an intertidal soft-sediment area in China: Does overfishing explain a high density but low diversity community that benefits staging shorebirds?

Science.gov (United States)

Yang, Hong-Yan; Chen, Bing; Piersma, Theunis; Zhang, Zhengwang; Ding, Changqing

2016-03-01

The Yellow Sea is a key staging ground for shorebirds that migrate from Australasia to the Arctic each spring. A lot of attention has been paid to the impact of habitat loss due to land reclamation on shorebird survival, but any effects of overfishing of coastal resources are unclear. In this study, the abundance of molluscs in the intertidal mudflats of northern Bohai Bay on the Chinese Yellow Sea was investigated in 2008-2014 from the perspective of their importance as food for northward migrating shorebirds, especially Red Knots Calidris canutus. Numerically contributing 96% to the numbers of 17 species found in spring 2008, the bivalve Potamocorbula laevis (the staple food of Red Knots and other shorebirds) dominated the intertidal mollusc community. In the spring of 2008-2014, the densities of P. laevis were surprisingly high, varying between 3900 and 41,000 individuals/m2 at distinctly small sizes (average shell lengths of 1.1 to 4.8 mm), and thus reaching some of the highest densities of marine bivalves recorded worldwide and providing good food for shorebirds. The distribution of P. laevis was associated with relatively soft sediments in close proximity to the recently built seawalls. A monthly sampling programme showed steep seasonal changes in abundance and size. P. laevis were nearly absent in winter, each year settling on the intertidal mudflats anew. Peak densities were reached in spring, when 0-age P. laevis were 1-3 mm long. The findings point to a highly unusual demographic structure of the species, suggesting that some interfering factors are at play. We hypothesise that the current dominance of young P. laevis in Bohai Bay reflects the combined pressures of a nearly complete active removal of adult populations from mid-summer to autumn for shrimp farming (this clearing of adults may offer space for recruitment during the next spring) and low numbers of epibenthic predators of bivalves, such as shrimps and crabs, due to persistent overfishing in

Recruitment and establishment of the gut microbiome in arctic shorebirds.

Science.gov (United States)

Grond, Kirsten; Lanctot, Richard B; Jumpponen, Ari; Sandercock, Brett K

2017-12-01

Gut microbiota play a key role in host health. Mammals acquire gut microbiota during birth, but timing of gut microbial recruitment in birds is unknown. We evaluated whether precocial chicks from three species of arctic-breeding shorebirds acquire gut microbiota before or after hatching, and then documented the rate and compositional dynamics of accumulation of gut microbiota. Contrary to earlier reports of microbial recruitment before hatching in chickens, quantitative PCR and Illumina sequence data indicated negligible microbiota in the guts of shorebird embryos before hatching. Analyses of chick feces indicated an exponential increase in bacterial abundance of guts 0-2 days post-hatch, followed by stabilization. Gut communities were characterized by stochastic recruitment and convergence towards a community dominated by Clostridia and Gammaproteobacteria. We conclude that guts of shorebird chicks are likely void of microbiota prior to hatch, but that stable gut microbiome establishes as early as 3 days of age, probably from environmental inocula. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Mitochondrial DNA sequence evolution in shorebird populations

NARCIS (Netherlands)

Wenink, P.W.

1994-01-01

This thesis describes the global molecular population structure of two shorebird species, in particular of the dunlin, Calidris alpina, by means of comparative sequence analysis of the most variable part of the mitochondrial DNA (mtDNA) genome. There are several reasons

Paired serologic and polymerase chain reaction analyses of avian influenza prevalence in Alaskan shorebirds

Science.gov (United States)

Pearce, John M.; Ruthrauff, Daniel R.; Hall, Jeffrey S.

2012-01-01

Surveillance has revealed low prevalence of avian influenza viruses (AIV) in shorebirds except Ruddy Turnstones (Arenaria interpres) on the North American Atlantic coast. Similarly, of five species of shorebirds surveyed in Alaska in 2010, Ruddy Turnstones had the highest AIV antibody prevalence; prevalence of AIV RNA was low or zero.

Production by intertidal benthic animals and limits to their predation by shorebirds : a heuristic model

NARCIS (Netherlands)

Piersma, Theunis

1987-01-01

This review examines the question whether the cumulative amount of benthic biomass removed by feeding shorebirds on a certain intertidal area is limited by the renewal rate of benthic food stocks. Limitations of current methods to estimate both predatory impact by shorebirds and harvestable benthic

Environmental and ecological conditions at Arctic breeding sites have limited effects on true survival rates of adult shorebirds

Science.gov (United States)

Weiser, Emily L.; Lanctot, Richard B.; Brown, Stephen C.; Gates, H. River; Bentzen, Rebecca L.; Bêty, Joël; Boldenow, Megan L.; English, Willow B.; Franks, Samantha E.; Koloski, Laura; Kwon, Eunbi; Lamarre, Jean-Francois; Lank, David B.; Liebezeit, Joseph R.; McKinnon, Laura; Nol, Erica; Rausch, Jennie; Saalfeld, Sarah T.; Senner, Nathan R.; Ward, David H.; Woodard, Paul F.; Sandercock, Brett K.

2018-01-01

Many Arctic shorebird populations are declining, and quantifying adult survival and the effects of anthropogenic factors is a crucial step toward a better understanding of population dynamics. We used a recently developed, spatially explicit Cormack–Jolly–Seber model in a Bayesian framework to obtain broad-scale estimates of true annual survival rates for 6 species of shorebirds at 9 breeding sites across the North American Arctic in 2010–2014. We tested for effects of environmental and ecological variables, study site, nest fate, and sex on annual survival rates of each species in the spatially explicit framework, which allowed us to distinguish between effects of variables on site fidelity versus true survival. Our spatially explicit analysis produced estimates of true survival rates that were substantially higher than previously published estimates of apparent survival for most species, ranging from S = 0.72 to 0.98 across 5 species. However, survival was lower for the arcticolasubspecies of Dunlin (Calidris alpina arcticola; S = 0.54), our only study taxon that migrates through the East Asian–Australasian Flyway. Like other species that use that flyway, arcticola Dunlin could be experiencing unsustainably low survival rates as a result of loss of migratory stopover habitat. Survival rates of our study species were not affected by timing of snowmelt or summer temperature, and only 2 species showed minor variation among study sites. Furthermore, although previous reproductive success, predator abundance, and the availability of alternative prey each affected survival of one species, no factors broadly affected survival across species. Overall, our findings of few effects of environmental or ecological variables suggest that annual survival rates of adult shorebirds are generally robust to conditions at Arctic breeding sites. Instead, conditions at migratory stopovers or overwintering sites might be driving adult survival rates and should be the

Change in numbers of resident and migratory shorebirds at the Cabo Rojo Salt Flats, Puerto Rico, USA (1985–2014)

Science.gov (United States)

Parks, Morgan A.; Collazo, Jaime A.; Colon, Jose A.; Ramos Alvarez, Katsi R.; Diaz, Oscar

2016-01-01

North American migratory shorebirds have declined markedly since the 1980s, underscoring the importance of population surveys to conduct status and trend assessments. Shorebird surveys were conducted during three multi-year periods between 1985 and 2014 and used to assess changes in numbers and species composition at the Cabo Rojo Salt Flats, Puerto Rico, USA, a site of regional importance in the eastern Caribbean. Eight fewer species (total = 21) were recorded in 2013–2014 as compared to the 29 from 1985–1992; all eight species were Nearctic migrants. Small calidrids had the highest population counts; however, this suite of species and all others experienced a ≥ 70% decline. Combined counts from the salt flats and neighboring wetlands in 2013–2014 were lower than counts only from the Cabo Rojo Salt Flats in two previous multi-year survey periods, which indicated a real change in numbers not just a shift in wetland use. Invertebrate prey density was lower in 2013–2014 than in 1994. Body fat condition of Semipalmated Sandpipers (Calidris pusilla), an index of habitat quality, did not differ between 1985–1992 and 2013–2014. These findings do not exclude the possibility that other species might be affected by lower prey density, or that local declines in numbers reflect changes at hemispheric, not local, scales. The magnitude of change between local and hemispheric scales closely matched for some species. Continued monitoring at the salt flats is warranted to help gauge the status of shorebirds in Puerto Rico and discern the probable cause of declines. Monitoring other sites in the Caribbean is needed for stronger inferences about regional status and trends.

Private lands habitat programs benefit California's native birds

Directory of Open Access Journals (Sweden)

Ryan T. DiGaudio

2015-10-01

Full Text Available To address the loss of wetlands and riparian forests in California, private lands habitat programs are available through U.S. federal and state government agencies to help growers, ranchers and other private landowners create and enhance wildlife habitat. The programs provide financial and technical assistance for implementing conservation practices. To evaluate the benefits of these programs for wildlife, we examined bird use of private wetlands, postharvest flooded croplands and riparian forests enrolled in habitat programs in the Central Valley and North Coast regions of California. We found that private Central Valley wetlands supported 181 bird species during the breeding season. During fall migration, postharvest flooded croplands supported wetland-dependent species and a higher density of shorebirds than did semipermanent wetlands. At the riparian sites, bird species richness increased after restoration. These results demonstrated that the programs provided habitat for the species they were designed to protect; a variety of resident and migratory bird species used the habitats, and many special status species were recorded at the sites.

Stable Isotope Analysis Reveals That Agricultural Habitat Provides an Important Dietary Component for Nonbreeding Dunlin

Directory of Open Access Journals (Sweden)

Lesley Joan Evans Ogden

2005-12-01

Full Text Available Although shorebirds spending the winter in temperate areas frequently use estuarine and supratidal (upland feeding habitats, the relative contribution of each habitat to individual diets has not been directly quantified. We quantified the proportional use that Calidris alpina pacifica (Dunlin made of estuarine vs. terrestrial farmland resources on the Fraser River Delta, British Columbia, using stable isotope analysis (δ13C, δ15N of blood from 268 Dunlin over four winters, 1997 through 2000. We tested for individual, age, sex, morphological, seasonal, and weather-related differences in dietary sources. Based on single- (δ13C and dual-isotope mixing models, the agricultural habitat contributed approximately 38% of Dunlin diet averaged over four winters, with the balance from intertidal flats. However, there was a wide variation among individuals in the extent of agricultural feeding, ranging from about 1% to 95% of diet. Younger birds had a significantly higher terrestrial contribution to diet (43% than did adults (35%. We estimated that 6% of adults and 13% of juveniles were obtaining at least 75% of their diet from terrestrial sources. The isotope data provided no evidence for sex or overall body size effects on the proportion of diet that is terrestrial in origin. The use of agricultural habitat by Dunlin peaked in early January. Adult Dunlin obtained a greater proportion of their diet terrestrially during periods of lower temperatures and high precipitation, whereas no such relationship existed for juveniles. Seasonal variation in the use of agricultural habitat suggests that it is used more during energetically stressful periods. The terrestrial farmland zone appears to be consistently important as a habitat for juveniles, but for adults it may provide an alternative feeding site used as a buffer against starvation during periods of extreme weather. Loss or reduction of agricultural habitat adjacent to estuaries may negatively impact

Food web consequences of an evolutionary arms race: Molluscs subject to crab predation on intertidal mudflats in Oman are unavailable to shorebirds

NARCIS (Netherlands)

Bom, R.A.; de Fouw, J; Klaassen, R.H.G.; Piersma, T.; Lavaleye, M.S.S.; Ens, B.J.; Oudman, T.; van Gils, J.A.

2018-01-01

Aim: Molluscivorous shorebirds supposedly developed their present wintering distribution after the last ice age. Currently, molluscivorous shorebirds are abundant on almost all shores of the world, except for those in the Indo-West Pacific (IWP). Long before shorebirds arrived on the scene,

Food web consequences of an evolutionary arms race : Molluscs subject to crab predation on intertidal mudflats in Oman are unavailable to shorebirds

NARCIS (Netherlands)

Bom, Roeland A.; de Fouw, Jimmy; Klaassen, Raymond H.G.; Piersma, Theunis; Lavaleye, Marc S.S.; Ens, Bruno J.; Oudman, Thomas; van Gils, Jan A.

Aim: Molluscivorous shorebirds supposedly developed their present wintering distribution after the last ice age. Currently, molluscivorous shorebirds are abundant on almost all shores of the world, except for those in the Indo-West Pacific (IWP). Long before shorebirds arrived on the scene,

Strong links between metal contamination, habitat modification and estuarine larval fish distributions

Energy Technology Data Exchange (ETDEWEB)

McKinley, Andrew C., E-mail: andrew.mckinley@hotmail.com [Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052 (Australia); Miskiewicz, Anthony [Environment and Recreation, Wollongong City Council, 41 Burelli Street, Wollongong, New South Wales 2500 (Australia); Taylor, Matthew D.; Johnston, Emma L. [Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052 (Australia)

2011-06-15

Changes to larval fish assemblages may have far reaching ecological impacts. Correlations between habitat modification, contamination and marine larval fish communities have rarely been assessed in situ. We investigated links between the large-scale distribution of stressors and larval fish assemblages in estuarine environments. Larval fish communities were sampled using a benthic sled within the inner and outer zones of three heavily modified and three relatively unmodified estuaries. Larval abundances were significantly greater in modified estuaries, and there were trends towards greater diversity in these systems. Differences in larval community composition were strongly related to sediment metal levels and reduced seagrass cover. The differences observed were driven by two abundant species, Paedogobius kimurai and Ambassis jacksoniensis, which occurred in large numbers almost exclusively in highly contaminated and pristine locations respectively. These findings suggest that contamination and habitat alteration manifest in substantial differences in the composition of estuarine larval fish assemblages. - Highlights: > We examine contamination/habitat modification impacts on larval fish. > Larvae communities differ between modified/unmodified estuaries. > Larvae are more abundant/diverse in modified areas. > Trends are strongly related to sediment metals/seagrass cover. > Larval impacts have wider ecological importance. - We describe strong links between sediment metals contamination, habitat modification and substantial differences in the composition of the estuarine larval fish assemblage.

Habitat use by Red Knots (Calidris canutus rufa): Experiments with oyster racks and reefs on the beach and intertidal of Delaware Bay, New Jersey

Science.gov (United States)

Burger, Joanna; Niles, Lawrence J.

2017-07-01

Sea level rise and increasing human activities have decreased intertidal habitat in many places in the world. The expansion of aquaculture in intertidal areas may impact birds and other organisms using these habitats, leading to questions of sustainability of both aquaculture and functioning estuarine ecosystems. Understanding the effect of oyster culture on shorebird activity, particularly on Red Knots (Calidris canutus rufa), a species on the U.S. Threatened List, is important for adaptive management and the expansion of oyster culture. In May 2013 we experimentally compared Red Knot and shorebird use of a beach section with racks and a control, and in 2016 we compared the use of sections with artificial reefs, oyster racks, and control on Delaware Bay, New Jersey (USA). The data included only times when no workers or other people were present. Censuses, conducted every 30 min throughout the day (279 censuses in 2013, 231 censuses in 2016), included the number of Red Knots and other shorebirds in each treatment section. In 2013, the total number of shorebirds was significantly higher in the rack section than in the control section, except for Red Knots and Ruddy Turnstones (Arenaria interpres) that occurred in higher numbers in the control than in the rack section. In 2016 Red Knot numbers were also significantly lower in the rack section. In 2013, the mean number of Red Knots/census was 13 for racks vs 59 for the control (P racks and over 68 for other treatments (P racks while both foraging and roosting, suggesting that caution should be used before placing oyster racks in areas used for foraging by Red Knots.

Linking habitat structure to life history strategy: Insights from a Mediterranean killifish

Science.gov (United States)

Cavraro, Francesco; Daouti, Irini; Leonardos, Ioannis; Torricelli, Patrizia; Malavasi, Stefano

2014-01-01

Modern theories of life history evolution deal with finding links between environmental factors, demographic structure of animal populations and the optimal life history strategy. Small-sized teleost fish, occurring in fragmented populations under contrasting environments, have been widely used as study models to investigate these issues. In the present study, the Mediterranean killifish Aphanius fasciatus was used to investigate the relationships between some habitat features and life history strategy. We selected four sites in the Venice lagoon inhabited by this species, exhibiting different combinations of two factors: overall adult mortality, related to intertidal water coverage and a consequent higher level of predator exposure, and the level of sediment organic matter, as indicator of habitat trophic richness. Results showed that these were the two most important factors influencing demography and life history traits in the four sites. Fish from salt marshes with high predator pressure were smaller and produced a higher number of eggs, whereas bigger fish and a lower reproductive investment were found in the two closed, not tidally influenced habitats. Habitat richness was positively related with population density, but negatively related with growth rate. In particular the synergy between high resources and low predation level was found to be important in shaping peculiar life history traits. Results were discussed in the light of the interactions between selective demographic forces acting differentially on age/size classes, such as predation, and habitat trophic richness that may represent an important energetic constraint on life history traits. The importance to link habitat productivity and morphology to demographic factors for a better understanding of the evolution of life history strategy under contrasting environments was finally suggested.

Avian influenza in shorebirds: experimental infection of ruddy turnstones (Arenaria interpres) with avian influenza virus

OpenAIRE

Hall, Jeffrey S.; Krauss, Scott; Franson, J. Christian; TeSlaa, Joshua L.; Nashold, Sean W.; Stallknecht, David E.; Webby, Richard J.; Webster, Robert G.

2012-01-01

Please cite this paper as: Hall et al. (2012) Avian influenza in shorebirds: experimental infection of ruddy turnstones (Arenaria interpres) with avian influenza virus. Influenza and Other Respiratory Viruses DOI: 10.1111/j.1750‐2659.2012.00358.x. Background  Low pathogenic avian influenza viruses (LPAIV) have been reported in shorebirds, especially at Delaware Bay, USA, during spring migration. However, data on patterns of virus excretion, minimal infectious doses, and clinical outcome are l...

Invisible Connections : Why Migrating Shorebirds Need the Yellow Sea

NARCIS (Netherlands)

van de Kam, Jan; Battley, Phil; McCaffery, Brian; Rogers, Danny; Hong, Jae-Sang; Moores, Nial; Yong-ki, Yu; Lewis, Jan; Piersma, Theunis

2010-01-01

Each year, invisible to the naked eye, millions of migrating shorebirds fly from Australasia towards the tidal flats of the Yellow Sea bordering China and Korea. Each flock is made up of individuals using whatever strategies they can muster to endure the flights, weather the storms and find safe

Strong links between metal contamination, habitat modification and estuarine larval fish distributions

International Nuclear Information System (INIS)

McKinley, Andrew C.; Miskiewicz, Anthony; Taylor, Matthew D.; Johnston, Emma L.

2011-01-01

Changes to larval fish assemblages may have far reaching ecological impacts. Correlations between habitat modification, contamination and marine larval fish communities have rarely been assessed in situ. We investigated links between the large-scale distribution of stressors and larval fish assemblages in estuarine environments. Larval fish communities were sampled using a benthic sled within the inner and outer zones of three heavily modified and three relatively unmodified estuaries. Larval abundances were significantly greater in modified estuaries, and there were trends towards greater diversity in these systems. Differences in larval community composition were strongly related to sediment metal levels and reduced seagrass cover. The differences observed were driven by two abundant species, Paedogobius kimurai and Ambassis jacksoniensis, which occurred in large numbers almost exclusively in highly contaminated and pristine locations respectively. These findings suggest that contamination and habitat alteration manifest in substantial differences in the composition of estuarine larval fish assemblages. - Highlights: → We examine contamination/habitat modification impacts on larval fish. → Larvae communities differ between modified/unmodified estuaries. → Larvae are more abundant/diverse in modified areas. → Trends are strongly related to sediment metals/seagrass cover. → Larval impacts have wider ecological importance. - We describe strong links between sediment metals contamination, habitat modification and substantial differences in the composition of the estuarine larval fish assemblage.

Ecological correlates of variable organ sizes and fat loads in the most northerly-wintering shorebirds

Science.gov (United States)

Ruthrauff, Daniel R.; Dekinga, Anne; Gill, R.E.; Summers, R.W.; Piersma, Theunis

2013-01-01

Shorebirds at northern latitudes during the nonbreeding season typically carry relatively large lipid stores and exhibit an up-regulation of lean tissues associated with digestion and thermogenesis. Intraspecific variation in these tissues across sites primarily reflects differences in environmental conditions. Rock (Calidris ptilocnemis (Coues, 1873)) and Purple (Calidris maritima (Brünnich, 1764)) sandpipers are closely related species having the most northerly nonbreeding distributions among shorebirds, living at latitudes up to 61°N in Cook Inlet, Alaska, and up to 71°N in northern Norway, respectively. Cook Inlet is the coldest known site used by nonbreeding shorebirds, and the region’s mudflats annually experience extensive coverage of foraging sites by sea and shore-fast ice. Accordingly, Rock Sandpipers increase their fat stores to nearly 20% of body mass during winter. In contrast, Purple Sandpipers exploit predictably ice-free rocky intertidal foraging sites and maintain low (food resources.

Modeling nonbreeding distributions of shorebirds and waterfowl in response to climate change

Science.gov (United States)

Reese, Gordon; Skagen, Susan K.

2017-01-01

To identify areas on the landscape that may contribute to a robust network of conservation areas, we modeled the probabilities of occurrence of several en route migratory shorebirds and wintering waterfowl in the southern Great Plains of North America, including responses to changing climate. We predominantly used data from the eBird citizen-science project to model probabilities of occurrence relative to land-use patterns, spatial distribution of wetlands, and climate. We projected models to potential future climate conditions using five representative general circulation models of the Coupled Model Intercomparison Project 5 (CMIP5). We used Random Forests to model probabilities of occurrence and compared the time periods 1981–2010 (hindcast) and 2041–2070 (forecast) in “model space.” Projected changes in shorebird probabilities of occurrence varied with species-specific general distribution pattern, migration distance, and spatial extent. Species using the western and northern portion of the study area exhibited the greatest likelihoods of decline, whereas species with more easterly occurrences, mostly long-distance migrants, had the greatest projected increases in probability of occurrence. At an ecoregional extent, differences in probabilities of shorebird occurrence ranged from −0.015 to 0.045 when averaged across climate models, with the largest increases occurring early in migration. Spatial shifts are predicted for several shorebird species. Probabilities of occurrence of wintering Mallards and Northern Pintail are predicted to increase by 0.046 and 0.061, respectively, with northward shifts projected for both species. When incorporated into partner land management decision tools, results at ecoregional extents can be used to identify wetland complexes with the greatest potential to support birds in the nonbreeding season under a wide range of future climate scenarios.

Food web consequences of an evolutionary arms race: Molluscs subject to crab predation on intertidal mudflats in Oman are unavailable to shorebirds

OpenAIRE

Bom, R.A.; de Fouw, J; Klaassen, R.H.G.; Piersma, T.; Lavaleye, M.S.S.; Ens, B.J.; Oudman, T.; van Gils, J.A.

2018-01-01

Aim: Molluscivorous shorebirds supposedly developed their present wintering distribution after the last ice age. Currently, molluscivorous shorebirds are abundant on almost all shores of the world, except for those in the Indo-West Pacific (IWP). Long before shorebirds arrived on the scene, molluscan prey in the IWP evolved strong anti-predation traits in a prolonged evolutionary arms race with durophagous predators including brachyuran crabs. Here, we investigate whether the absence of mollu...

Limited male incubation ability and the evolution of egg size in shorebirds.

Science.gov (United States)

Lislevand, Terje; Thomas, Gavin H

2006-06-22

In bird species where males incubate but are smaller than females, egg size may be constrained by male body size, and hence ability to incubate the eggs. Using data from 71 such shorebird species, we show that egg size decreases as the degree of female-biased sexual size dimorphism increases, after controlling for female body mass. Relative egg size was not related to mean clutch size. However, when controlling for mating system, the relationship between female-biased sexual size dimorphism and relative egg size was only significant in polyandrous species. The relatively small eggs of socially polyandrous shorebirds have previously been explained as an energy-saving strategy associated with the production of multiple clutches. Our findings suggest that egg size evolution is better explained by male incubation limitation in these birds.

Mechanisms promoting higher growth rate in arctic than in temperate shorebirds

NARCIS (Netherlands)

Schekkerman, H.; Tulp, I.Y.M.; Piersma, T.; Visser, G.H.

2003-01-01

We compared prefledging growth, energy expenditure, and time budgets in the arctic-breeding red knot (Calidris canutus) to those in temperate shorebirds, to investigate how arctic chicks achieve a high growth rate despite energetic difficulties associated with precocial development in a cold

Mechanisms promoting higher growth rate in arctic than in temperate shorebirds

NARCIS (Netherlands)

Schekkerman, H; Tulp, Ingrid; Piersma, T.; Visser, G.H.

We compared prefledging growth, energy expenditure, and time budgets in the arctic-breeding red knot (Calidris canutus) to those in temperate shorebirds, to investigate how arctic chicks achieve a high growth rate despite energetic difficulties associated with precocial development in a cold

Smartphone-based distributed data collection enables rapid assessment of shorebird habitat suitability

Science.gov (United States)

Thieler, E. Robert; Zeigler, Sara; Winslow, Luke; Hines, Megan K.; Read, Jordan S.; Walker, Jordan I.

2016-01-01

Understanding and managing dynamic coastal landscapes for beach-dependent species requires biological and geological data across the range of relevant environments and habitats. It is difficult to acquire such information; data often have limited focus due to resource constraints, are collected by non-specialists, or lack observational uniformity. We developed an open-source smartphone application called iPlover that addresses these difficulties in collecting biogeomorphic information at piping plover (Charadrius melodus) nest sites on coastal beaches. This paper describes iPlover development and evaluates data quality and utility following two years of collection (n = 1799 data points over 1500 km of coast between Maine and North Carolina, USA). We found strong agreement between field user and expert assessments and high model skill when data were used for habitat suitability prediction. Methods used here to develop and deploy a distributed data collection system have broad applicability to interdisciplinary environmental monitoring and modeling.

Coastal vertebrate exposure to predicted habitat changes due to sea level rise

Science.gov (United States)

Hunter, Elizabeth A.; Nibbelink, Nathan P.; Alexander, Clark R.; Barrett, Kyle; Mengak, Lara F.; Guy, Rachel; Moore, Clinton; Cooper, Robert J.

2015-01-01

Sea level rise (SLR) may degrade habitat for coastal vertebrates in the Southeastern United States, but it is unclear which groups or species will be most exposed to habitat changes. We assessed 28 coastal Georgia vertebrate species for their exposure to potential habitat changes due to SLR using output from the Sea Level Affecting Marshes Model and information on the species’ fundamental niches. We assessed forecasted habitat change up to the year 2100 using three structural habitat metrics: total area, patch size, and habitat permanence. Almost all of the species (n = 24) experienced negative habitat changes due to SLR as measured by at least one of the metrics. Salt marsh and ocean beach habitats experienced the most change (out of 16 categorical land cover types) across the three metrics and species that used salt marsh extensively (rails and marsh sparrows) were ranked highest for exposure to habitat changes. Species that nested on ocean beaches (Diamondback Terrapins, shorebirds, and terns) were also ranked highly, but their use of other foraging habitats reduced their overall exposure. Future studies on potential effects of SLR on vertebrates in southeastern coastal ecosystems should focus on the relative importance of different habitat types to these species’ foraging and nesting requirements. Our straightforward prioritization approach is applicable to other coastal systems and can provide insight to managers on which species to focus resources, what components of their habitats need to be protected, and which locations in the study area will provide habitat refuges in the face of SLR.

Experimental challenge and pathology of highly pathogenic avian influenza virus H5N1 in dunlin (Calidris alpina), an intercontinental migrant shorebird species

Science.gov (United States)

Hall, Jeffrey S.; Franson, J. Christian; Gill, Robert E.; Meteyer, Carol U.; TeSlaa, Joshua L.; Nashold, Sean W.; Dusek, Robert J.; Ip, Hon S.

2011-01-01

Background Shorebirds (Charadriiformes) are considered one of the primary reservoirs of avian influenza. Because these species are highly migratory, there is concern that infected shorebirds may be a mechanism by which highly pathogenic avian influenza virus (HPAIV) H5N1 could be introduced into North America from Asia. Large numbers of dunlin (Calidris alpina) migrate from wintering areas in central and eastern Asia, where HPAIV H5N1 is endemic, across the Bering Sea to breeding areas in Alaska. Low pathogenic avian influenza virus has been previously detected in dunlin, and thus, dunlin represent a potential risk to transport HPAIV to North America. To date no experimental challenge studies have been performed in shorebirds.

Body-building without power training : Endogenously regulated pectoral muscle hypertrophy in confined shorebirds

NARCIS (Netherlands)

Dietz, MW; Piersma, T; Dekinga, A

1999-01-01

Shorebirds such as red knots Calidris canutus routinely make migratory flights of 3000 km or more. Previous studies on this species, based on compositional analyses, suggest extensive pectoral muscle hypertrophy in addition to fat storage before take-off. Such hypertrophy could be due to power

Avian influenza in shorebirds: experimental infection of ruddy turnstones (Arenaria interpres) with avian influenza virus

Science.gov (United States)

Hall, Jeffrey S.; Krauss, Scott; Franson, J. Christian; TeSlaa, Joshua L.; Nashold, Sean W.; Stallknecht, David E.; Webby, Richard J.; Webster, Robert G.

2013-01-01

Background: Low pathogenic avian influenza viruses (LPAIV) have been reported in shorebirds, especially at Delaware Bay, USA, during spring migration. However, data on patterns of virus excretion, minimal infectious doses, and clinical outcome are lacking. The ruddy turnstone (Arenaria interpres) is the shorebird species with the highest prevalence of influenza virus at Delaware Bay. Objectives: The primary objective of this study was to experimentally assess the patterns of influenza virus excretion, minimal infectious doses, and clinical outcome in ruddy turnstones. Methods: We experimentally challenged ruddy turnstones using a common LPAIV shorebird isolate, an LPAIV waterfowl isolate, or a highly pathogenic H5N1 avian influenza virus. Cloacal and oral swabs and sera were analyzed from each bird. Results: Most ruddy turnstones had pre-existing antibodies to avian influenza virus, and many were infected at the time of capture. The infectious doses for each challenge virus were similar (103·6–104·16 EID50), regardless of exposure history. All infected birds excreted similar amounts of virus and showed no clinical signs of disease or mortality. Influenza A-specific antibodies remained detectable for at least 2 months after inoculation. Conclusions: These results provide a reference for interpretation of surveillance data, modeling, and predicting the risks of avian influenza transmission and movement in these important hosts.

Stopover ecology of Semipalmated Sandpipers (Calidris pusilla) at coastal deltas of the Beaufort Sea, Alaska

Science.gov (United States)

Churchwell, Roy T.

Avian migration is one of the wonders of the natural world. Stored fats are the main source of nutrients and fuel for avian migration and it is assumed the fat deposition at stopover sites is a critical component of a successful migration. Stopover sites are crucial in the successful migration of many birds, but particularly for arctic-breeding shorebirds that migrate long distances from breeding to wintering grounds. Despite the importance of stopover sites, it is often difficult to determine the importance of these sites to migrating shorebirds. I investigated three aspects of stopover ecology of Semipalmated Sandpipers (Calidris pusilla) foraging at coastal deltas on the Beaufort Sea coast, Alaska. First, I quantified the spatial and temporal distribution and abundance of the benthic macroinvertebrate community living within the mudflats. I found that there were two ecological groups of macroinvertebrates using river deltas, one originated in terrestrial freshwater habitats and most importantly could withstand freezing in delta sediments over the winter, and the other originated from the marine environment, could not withstand freezing and had to migrate to intertidal habitats each summer from deeper water areas that did not freeze over the winter. Stable isotope analysis allowed me to describe the origin of carbon consumed by invertebrates in intertidal habitats. I predicted freshwater invertebrates would consume terrestrial carbon, and marine invertebrates would consume marine carbon, but I found that both groups utilized the same carbon, which was a mixture of terrestrial and marine sources. My second research question determined the importance of delta foraging habitat for fall migrating Semipalmated Sandpipers. I mapped the temporal distribution and abundance of birds and quantified this relationship to invertebrate distribution and abundance. I researched fattening rates of shorebirds by measuring triglycerides in the blood of shorebirds I captured. I

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.

Science.gov (United States)

Alcaide, María; Stogios, Peter J; Lafraya, Álvaro; Tchigvintsev, Anatoli; Flick, Robert; Bargiela, Rafael; Chernikova, Tatyana N; Reva, Oleg N; Hai, Tran; Leggewie, Christian C; Katzke, Nadine; La Cono, Violetta; Matesanz, Ruth; Jebbar, Mohamed; Jaeger, Karl-Erich; Yakimov, Michail M; Yakunin, Alexander F; Golyshin, Peter N; Golyshina, Olga V; Savchenko, Alexei; Ferrer, Manuel

2015-02-01

The present study provides a deeper view of protein functionality as a function of temperature, salt and pressure in deep-sea habitats. A set of eight different enzymes from five distinct deep-sea (3040-4908 m depth), moderately warm (14.0-16.5°C) biotopes, characterized by a wide range of salinities (39-348 practical salinity units), were investigated for this purpose. An enzyme from a 'superficial' marine hydrothermal habitat (65°C) was isolated and characterized for comparative purposes. We report here the first experimental evidence suggesting that in salt-saturated deep-sea habitats, the adaptation to high pressure is linked to high thermal resistance (P value = 0.0036). Salinity might therefore increase the temperature window for enzyme activity, and possibly microbial growth, in deep-sea habitats. As an example, Lake Medee, the largest hypersaline deep-sea anoxic lake of the Eastern Mediterranean Sea, where the water temperature is never higher than 16°C, was shown to contain halopiezophilic-like enzymes that are most active at 70°C and with denaturing temperatures of 71.4°C. The determination of the crystal structures of five proteins revealed unknown molecular mechanisms involved in protein adaptation to poly-extremes as well as distinct active site architectures and substrate preferences relative to other structurally characterized enzymes. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Integrated wetland management for waterfowl and shorebirds at Mattamuskeet National Wildlife Refuge, North Carolina

Science.gov (United States)

Tavernia, Brian G.; Stanton, John D.; Lyons, James E.

2017-11-22

Mattamuskeet National Wildlife Refuge (MNWR) offers a mix of open water, marsh, forest, and cropland habitats on 20,307 hectares in coastal North Carolina. In 1934, Federal legislation (Executive Order 6924) established MNWR to benefit wintering waterfowl and other migratory bird species. On an annual basis, the refuge staff decide how to manage 14 impoundments to benefit not only waterfowl during the nonbreeding season, but also shorebirds during fall and spring migration. In making these decisions, the challenge is to select a portfolio, or collection, of management actions for the impoundments that optimizes use by the three groups of birds while respecting budget constraints. In this study, a decision support tool was developed for these annual management decisions.Within the decision framework, there are three different management objectives: shorebird-use days during fall and spring migrations, and waterfowl-use days during the nonbreeding season. Sixteen potential management actions were identified for impoundments; each action represents a combination of hydroperiod and vegetation manipulation. Example hydroperiods include semi-permanent and seasonal drawdowns, and vegetation manipulations include mechanical-chemical treatment, burning, disking, and no action. Expert elicitation was used to build a Bayesian Belief Network (BBN) model that predicts shorebird- and waterfowl-use days for each potential management action. The BBN was parameterized for a representative impoundment, MI-9, and predictions were re-scaled for this impoundment to predict outcomes at other impoundments on the basis of size. Parameter estimates in the BBN model can be updated using observations from ongoing monitoring that is part of the Integrated Waterbird Management and Monitoring (IWMM) program.The optimal portfolio of management actions depends on the importance, that is, weights, assigned to the three objectives, as well as the budget. Five scenarios with a variety of objective

Plastic and other microfibers in sediments, macroinvertebrates and shorebirds from three intertidal wetlands of southern Europe and west Africa.

Science.gov (United States)

Lourenço, Pedro M; Serra-Gonçalves, Catarina; Ferreira, Joana Lia; Catry, Teresa; Granadeiro, José P

2017-12-01

Microplastics are widespread in aquatic environments and can be ingested by a wide range of organisms. They can also be transferred along food webs. Estuaries and other tidal wetlands may be particularly prone to this type of pollution due to their particular hydrological characteristics and sewage input, but few studies have compared wetlands with different anthropogenic pressure. Furthermore, there is no information on microplastic transfer to secondary intertidal consumers such as shorebirds. We analysed intertidal sediments, macroinvertebrates and shorebirds, from three important wetlands along the Eastern Atlantic (Tejo estuary, Portugal; Banc d'Arguin, Mauritania and Bijagós archipelago, Guinea-Bissau), in order to evaluate the prevalence and transfer of microplastics along the intertidal food web. We further investigated variables that could explain the distribution of microplastics within the intertidal areas of the Tejo estuary. Microfibers were recorded in a large proportion of sediment samples (91%), macroinvertebrates (60%) and shorebird faeces (49%). μ-FTIR analysis indicated only 52% of these microfibers were composed of synthetic polymers (i.e. plastics). Microfiber concentrations were generally higher in the Tejo and lower in the Bijagós, with intermediate values for Banc d'Arguin, thus following a latitudinal gradient. Heavier anthropogenic pressure in the Tejo explains this pattern, but the relatively high concentrations in a pristine site like the Banc d'Arguin demonstrate the spread of pollution in the oceans. Similar microfiber concentrations in faeces of shorebirds with different foraging behaviour and similar composition of fibres collected from invertebrate and faeces suggest shorebirds mainly ingest microfibers through their prey, confirming microfiber transfer along intertidal food webs. Within the Tejo estuary, concentration of microfibers in the sediment and bivalves were positively related with the percentage of fine sediments and

Terrestrial habitat mapping of the Oak Ridge Reservation: 1996 Summary

International Nuclear Information System (INIS)

Washington-Allen, R.A.; Ashwood, T.L.

1996-09-01

The US DOE is in the process of remediating historical contamination on the Oak Ridge Reservation (ORR). Two key components are ecological risk assessment and monitoring. In 1994 a strategy was developed and a specific program was initiated to implement the strategy for the terrestrial biota of the entire ORR. This document details results of the first task: development of a habitat map and habitat models for key species of interest. During the last 50 years ORR has been a relatively protected island of plant and animal habitats in a region of rapidly expanding urbanization. A preliminary biodiversity assessment of the ORR by the Nature Conservancy in 1995 noted 272 occurrences of significant plant and animal species and communities. Field surveys of threatened and endangered species show that the ORR contains 20 rare plant species, 4 of which are on the state list of endangered species. The rest are either on the state list of threatened species or listed as being of special concern. The ORR provides habitat for some 60 reptilian and amphibian species; more than 120 species of terrestrial birds; 32 species of waterfowl, wading birds, and shorebirds; and about 40 mammalian species. The ORR is both a refuge for rare species and a reservoir of recruitment for surrounding environments and wildlife management areas. Cedar barrens, river bluffs, and wetlands have been identified as the habitat for most rare vascular plant species on the ORR

High basal metabolic rates in shorebirds while in the Arctic: a circumpolar view

NARCIS (Netherlands)

Lindström, A.; Klaassen, M.R.J.

2003-01-01

The basal metabolic rate (BMR) of Old World long-distance-migrant shorebirds has been found to vary along their migration route. On average, BMR is highest in the Arctic at the start of fall migration, intermediate at temperate latitudes, and lowest on the tropical wintering grounds. As a test of

Ecological correlates of variable organ sizes and fat loads in the most northerly wintering shorebirds

NARCIS (Netherlands)

Ruthrauff, D. R.; Dekinga, A.; Gill, R. E.; Summers, R. W.; Piersma, T.

2013-01-01

Shorebirds at northern latitudes during the nonbreeding season typically carry relatively large lipid stores and exhibit an up-regulation of lean tissues associated with digestion and thermogenesis. Intraspecific variation in these tissues across sites primarily reflects differences in environmental

The exploitation of intertidal food resources in Inhaca bay, Mozambique, by shorebirds and humans

NARCIS (Netherlands)

Boer, de W.F.; Longamane, F.A.

1996-01-01

The intertidal areas on Inhaca island provide important food resources for shorebirds as well as the local population. Average bird density is 2-6 individuals/ha during summer, decreasing to 0.3 in winter, which is one of the lowest records for the African coasts. Whimbrels Numenius phaeopus and

From an egg to a fledgling : A perspective on shorebird breeding ecology and chick energetics

NARCIS (Netherlands)

Tjørve, Kathleen Marjorie Calf

2006-01-01

Shorebirds form a diverse group of bird species exhibiting a variety growth rates, reproduction strategies and behaviours which enable them to survive in the different environments in which they live and breed. This variation makes this group of species an ideal subject to study latitudinal

Does growth rate determine the rate of metabolism in shorebird chicks living in the arctic?

NARCIS (Netherlands)

Williams, Joseph B.; Tieleman, B. Irene; Visser, G. Henk; Ricklefs, Robert E.

2007-01-01

We measured resting and peak metabolic rates (RMR and PMR, respectively) during development of chicks of seven species of shorebirds: least sandpiper (Calidris minutilla; adult mass 20 22 g), dunlin (Calidris alpina; 56-62 g), lesser yellowlegs (Tringa flavipes; 88-92 g), short-billed dowitcher

Linking seasonal home range size with habitat selection and movement in a mountain ungulate.

Science.gov (United States)

Viana, Duarte S; Granados, José Enrique; Fandos, Paulino; Pérez, Jesús M; Cano-Manuel, Francisco Javier; Burón, Daniel; Fandos, Guillermo; Aguado, María Ángeles Párraga; Figuerola, Jordi; Soriguer, Ramón C

2018-01-01

and account for process dependencies, here the interdependence of movement and habitat selection, to understand how animals use space. This study contributes to understand how movement links environmental and geographical space use and determines home range behaviour in large herbivores.

Wetland Plant Guide for Assessing Habitat Impacts of Real-Time Salinity Management

Energy Technology Data Exchange (ETDEWEB)

Quinn, Nigel W.T.; Feldmann, Sara A.

2004-10-15

This wetland plant guide was developed to aid moist soil plant identification and to assist in the mapping of waterfowl and shorebird habitat in the Grassland Water District and surrounding wetland areas. The motivation for this habitat mapping project was a concern that real-time salinity management of wetland drainage might have long-term consequences for wildfowl habitat health--changes in wetland drawdown schedules might, over the long term, lead to increased soil salinity and other conditions unfavorable to propagation of the most desirable moist soil plants. Hence, the implementation of a program to monitor annual changes in the most common moist soil plants might serve as an index of habitat health and sustainability. Our review of the current scientific and popular literature failed to identify a good, comprehensive field guide that could be used to calibrate and verify high resolution remote sensing imagery, that we had started to use to develop maps of wetland moist soil plants in the Grassland Water District. Since completing the guide it has been used to conduct ground truthing field surveys using the California Native Plant Society methodology in 2004. Results of this survey and a previous wetland plant survey in 2003 are published in a companion LBNL publication summarizing 4 years of fieldwork to advance the science of real-time wetland salinity management.

Linking stream flow and groundwater to avian habitat in a desert riparian system.

Science.gov (United States)

Merritt, David M; Bateman, Heather L

2012-10-01

Increasing human populations have resulted in aggressive water development in arid regions. This development typically results in altered stream flow regimes, reduced annual flow volumes, changes in fluvial disturbance regimes, changes in groundwater levels, and subsequent shifts in ecological patterns and processes. Balancing human demands for water with environmental requirements to maintain functioning ecosystems requires quantitative linkages between water in streams and ecosystem attributes. Streams in the Sonoran Desert provide important habitat for vertebrate species, including resident and migratory birds. Habitat structure, food, and nest-building materials, which are concentrated in riparian areas, are provided directly or indirectly by vegetation. We measured riparian vegetation, groundwater and surface water, habitat structure, and bird occurrence along Cherry Creek, a perennial tributary of the Salt River in central Arizona, USA. The purpose of this work was to develop an integrated model of groundwater-vegetation-habitat structure and bird occurrence by: (1) characterizing structural and provisioning attributes of riparian vegetation through developing a bird habitat index (BHI), (2) validating the utility of our BHI through relating it to measured bird community composition, (3) determining the riparian plant species that best explain the variability in BHI, (4) developing predictive models that link important riparian species to fluvial disturbance and groundwater availability along an arid-land stream, and (5) simulating the effects of changes in flow regime and groundwater levels and determining their consequences for riparian bird communities. Riparian forest and shrubland vegetation cover types were correctly classified in 83% of observations as a function of fluvial disturbance and depth to water table. Groundwater decline and decreased magnitude of fluvial disturbance caused significant shifts in riparian cover types from riparian forest to

Is the evolution of clutch size limited by incubation ability in shorebirds?

OpenAIRE

Beatty, Jessica Lynne

2015-01-01

Incubation is a crucial aspect of avian life history where differences in incubation techniques and investments can have long lasting effects on offspring and parental well- being and reproductive success. The factors limiting why some birds, such as shorebirds, have fixed clutch sizes has intrigued life history theorist to propose different hypotheses about the evolution of clutch size. Lack's "incubation limitation hypothesis," suggesting that clutch size is limited by the amount of eggs a ...

Brood desertion by female shorebirds : a test of the differential parental capacity hypothesis on Kentish plovers

NARCIS (Netherlands)

Amat, JA; Visser, GH; Perez-Hurtado, A; Arroyo, GM

2000-01-01

The aim of this study was to examine whether the energetic costs of reproduction explain offspring desertion by female shorebirds, as is suggested by the differential parental capacity hypothesis. A prediction of the hypothesis is that, in species with biparental incubation in which females desert

Space use and habitat selection of migrant and resident American Avocets in San Francisco Bay

Science.gov (United States)

Demers, Scott A.; Takekawa, John Y.; Ackerman, Joshua T.; Warnock, N.; Athearn, N.D.

2010-01-01

San Francisco Bay is a wintering area for shorebirds, including American Avocets (Recurvirostra americana). Recently, a new resident population of avocets has emerged, presumably because of the development of tidal marshes into salt-evaporation ponds. In habitat restoration now underway, as many as 90% of salt ponds will be restored to tidal marsh. However, it is unknown if wintering and resident avocets coexist and if their requirements for space and habitat differ, necessitating different management for their populations to be maintained during restoration. We captured and radio-marked wintering avocets at a salt pond and a tidal flat to determine their population status (migrant or resident) and examine their space use and habitat selection. Of the radio-marked avocets, 79% were migrants and 21% were residents. At the salt pond, residents' fidelity to their location of capture was higher, and residents moved less than did migrants from the same site. Conversely, on the tidal flat, fidelity of residents to their site of capture was lower, and residents' home ranges were larger than those of migrants from the same site. Habitat selection of migrants and residents differed little; however, capture site influenced habitat selection far more than the birds' status as migrants or residents. Our study suggests that individual avocets have high site fidelity while wintering in San Francisco Bay, although the avocet as a species is plastic in its space use and habitat selection. This plasticity may allow wintering migrant and resident avocets to adapt to habitat change in San Francisco Bay. ?? The Cooper Ornithological Society 2010.

Active migration is associated with specific and consistent changes to gut microbiota in Calidris shorebirds.

Science.gov (United States)

Risely, Alice; Waite, David W; Ujvari, Beata; Hoye, Bethany J; Klaassen, Marcel

2018-03-01

Gut microbes are increasingly recognised for their role in regulating an animal's metabolism and immunity. However, identifying repeatable associations between host physiological processes and their gut microbiota has proved challenging, in part because microbial communities often respond stochastically to host physiological stress (e.g. fasting, forced exercise or infection). Migratory birds provide a valuable system in which to test host-microbe interactions under physiological extremes because these hosts are adapted to predictable metabolic and immunological challenges as they undergo seasonal migrations, including temporary gut atrophy during long-distance flights. These physiological challenges may either temporarily disrupt gut microbial ecosystems, or, alternatively, promote predictable host-microbe associations during migration. To determine the relationship between migration and gut microbiota, we compared gut microbiota composition between migrating and non-migrating ("resident") conspecific shorebirds sharing a flock. We performed this across two sandpiper species, Calidris ferruginea and Calidris ruficollis, in north-western Australia, and an additional C. ruficollis population 3,000 km away in southern Australia. We found that migrants consistently had higher abundances of the bacterial genus Corynebacterium (average 28% abundance) compared to conspecific residents (average gut community variation when excluding Corynebacterium. Our findings suggest a consistent relationship between Corynebacterium and Calidris shorebirds during migration, with further research required to identify causal mechanisms behind the association, and to elucidate functionality to the host. However, outside this specific association, migrating shorebirds broadly maintained gut community structure, which may allow them to quickly recover gut function after a migratory flight. This study provides a rare example of a repeatable and specific response of the gut microbiota to a

An evaluation of rapid methods for monitoring vegetation characteristics of wetland bird habitat

Science.gov (United States)

Tavernia, Brian G.; Lyons, James E.; Loges, Brian W.; Wilson, Andrew; Collazo, Jaime A.; Runge, Michael C.

2016-01-01

Wetland managers benefit from monitoring data of sufficient precision and accuracy to assess wildlife habitat conditions and to evaluate and learn from past management decisions. For large-scale monitoring programs focused on waterbirds (waterfowl, wading birds, secretive marsh birds, and shorebirds), precision and accuracy of habitat measurements must be balanced with fiscal and logistic constraints. We evaluated a set of protocols for rapid, visual estimates of key waterbird habitat characteristics made from the wetland perimeter against estimates from (1) plots sampled within wetlands, and (2) cover maps made from aerial photographs. Estimated percent cover of annuals and perennials using a perimeter-based protocol fell within 10 percent of plot-based estimates, and percent cover estimates for seven vegetation height classes were within 20 % of plot-based estimates. Perimeter-based estimates of total emergent vegetation cover did not differ significantly from cover map estimates. Post-hoc analyses revealed evidence for observer effects in estimates of annual and perennial covers and vegetation height. Median time required to complete perimeter-based methods was less than 7 percent of the time needed for intensive plot-based methods. Our results show that rapid, perimeter-based assessments, which increase sample size and efficiency, provide vegetation estimates comparable to more intensive methods.

Household disposables as breeding habitats of dengue vectors: Linking wastes and public health

Energy Technology Data Exchange (ETDEWEB)

Banerjee, Soumyajit, E-mail: soumyajitb@gmail.com [Department of Zoology, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700 019 (India); Aditya, Gautam, E-mail: gautamaditya2001@gmail.com [Department of Zoology, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700 019 (India); Department of Zoology, The University of Burdwan, Golapbag, Burdwan 713 104 (India); Saha, Goutam K, E-mail: gkszoo@rediffmail.com [Department of Zoology, University of Calcutta, 35 Ballygunge Circular Road, Kolkata 700 019 (India)

2013-01-15

are most frequently disposed off contributed largely to the sustenance of Aedes mosquito population in the city. This calls for a strict legislation towards disposal as well as enhanced management of the household wastes. A link between the wastes disposed and subsequent conversion to the mosquito larval habitats cautions for continuance of Aedes population and possibility of dengue epidemics if the existing management practices are not improved.

Household disposables as breeding habitats of dengue vectors: Linking wastes and public health

International Nuclear Information System (INIS)

Banerjee, Soumyajit; Aditya, Gautam; Saha, Goutam K

2013-01-01

in the city. This calls for a strict legislation towards disposal as well as enhanced management of the household wastes. A link between the wastes disposed and subsequent conversion to the mosquito larval habitats cautions for continuance of Aedes population and possibility of dengue epidemics if the existing management practices are not improved.

Limited male incubation ability and the evolution of egg size in shorebirds

OpenAIRE

Lislevand, Terje; Thomas, Gavin H.

2006-01-01

In bird species where males incubate but are smaller than females, egg size may be constrained by male body size, and hence ability to incubate the eggs. Using data from 71 such shorebird species, we show that egg size decreases as the degree of female-biased sexual size dimorphism increases, after controlling for female body mass. Relative egg size was not related to mean clutch size. However, when controlling for mating system, the relationship between female-biased sexual size dimorp...

Ingested water equilibrates isotopically with the body water pool of a shorebird with unrivaled water fluxes

NARCIS (Netherlands)

Visser, G.H.; Dekinga, A; Achterkamp, B.; Piersma, T.

We investigated the applicability of H-2 to measure the amount of body water (TBW) and water fluxes in relation to diet type and level of food intake in a mollusk-eating shorebird, the Red Knot (Calidris canutus). Six birds were exposed to eight experimental indoor conditions. Average fractional H-2

Linking habitat mosaics and connectivity in a coral reef seascape

KAUST Repository

McMahon, Kelton

2012-09-04

Tropical marine ecosystems are under mounting anthropogenic pressure from overfishing and habitat destruction, leading to declines in their structure and function on a global scale. Although maintaining connectivity among habitats within a seascape is necessary for preserving population resistance and resilience, quantifying movements of individuals within seascapes remains challenging. Traditional methods of identifying and valuing potential coral reef fish nursery habitats are indirect, often relying on visual surveys of abundance and correlations of size and biomass among habitats. We used compound-specific stable isotope analyses to determine movement patterns of commercially important fish populations within a coral reef seascape. This approach allowed us to quantify the relative contributions of individuals from inshore nurseries to reef populations and identify migration corridors among important habitats. Our results provided direct measurements of remarkable migrations by juvenile snapper of over 30 km, between nurseries and reefs. We also found significant plasticity in juvenile nursery residency. Although a majority of individuals on coastal reefs had used seagrass nurseries as juveniles, many adults on oceanic reefs had settled directly into reef habitats. Moreover, seascape con figuration played a critical but heretofore unrecognized role in determining connectivity among habitats. Finally, our approach provides key quantitative data necessary to estimate the value of distinctive habitats to ecosystem services provided by seascapes.

Linking habitat mosaics and connectivity in a coral reef seascape

KAUST Repository

McMahon, Kelton; Berumen, Michael L.; Thorrold, Simon R.

2012-01-01

Tropical marine ecosystems are under mounting anthropogenic pressure from overfishing and habitat destruction, leading to declines in their structure and function on a global scale. Although maintaining connectivity among habitats within a seascape is necessary for preserving population resistance and resilience, quantifying movements of individuals within seascapes remains challenging. Traditional methods of identifying and valuing potential coral reef fish nursery habitats are indirect, often relying on visual surveys of abundance and correlations of size and biomass among habitats. We used compound-specific stable isotope analyses to determine movement patterns of commercially important fish populations within a coral reef seascape. This approach allowed us to quantify the relative contributions of individuals from inshore nurseries to reef populations and identify migration corridors among important habitats. Our results provided direct measurements of remarkable migrations by juvenile snapper of over 30 km, between nurseries and reefs. We also found significant plasticity in juvenile nursery residency. Although a majority of individuals on coastal reefs had used seagrass nurseries as juveniles, many adults on oceanic reefs had settled directly into reef habitats. Moreover, seascape con figuration played a critical but heretofore unrecognized role in determining connectivity among habitats. Finally, our approach provides key quantitative data necessary to estimate the value of distinctive habitats to ecosystem services provided by seascapes.

Linking habitat mosaics and connectivity in a coral reef seascape.

Science.gov (United States)

McMahon, Kelton W; Berumen, Michael L; Thorrold, Simon R

2012-09-18

Tropical marine ecosystems are under mounting anthropogenic pressure from overfishing and habitat destruction, leading to declines in their structure and function on a global scale. Although maintaining connectivity among habitats within a seascape is necessary for preserving population resistance and resilience, quantifying movements of individuals within seascapes remains challenging. Traditional methods of identifying and valuing potential coral reef fish nursery habitats are indirect, often relying on visual surveys of abundance and correlations of size and biomass among habitats. We used compound-specific stable isotope analyses to determine movement patterns of commercially important fish populations within a coral reef seascape. This approach allowed us to quantify the relative contributions of individuals from inshore nurseries to reef populations and identify migration corridors among important habitats. Our results provided direct measurements of remarkable migrations by juvenile snapper of over 30 km, between nurseries and reefs. We also found significant plasticity in juvenile nursery residency. Although a majority of individuals on coastal reefs had used seagrass nurseries as juveniles, many adults on oceanic reefs had settled directly into reef habitats. Moreover, seascape configuration played a critical but heretofore unrecognized role in determining connectivity among habitats. Finally, our approach provides key quantitative data necessary to estimate the value of distinctive habitats to ecosystem services provided by seascapes.

Abdominally implanted satellite transmitters affect reproduction and survival rather than migration of large shorebirds

Science.gov (United States)

Hooijmeijer, Jos C. E. W.; Gill, Robert E.; Mulcahy, Daniel M.; Tibbitts, T. Lee; Kentie, Rosemarie; Gerritsen, Gerrit J.; Bruinzeel, Leo W.; Tijssen, David C.; Harwood, Christopher M.; Piersma, Theunis

2014-01-01

Satellite telemetry has become a common technique to investigate avian life-histories, but whether such tagging will affect fitness is a critical unknown. In this study, we evaluate multi-year effects of implanted transmitters on migratory timing and reproductive performance in shorebirds. Shorebirds increasingly are recognized as good models in ecology and evolution. That many of them are of conservation concern adds to the research responsibilities. In May 2009, we captured 56 female Black-tailed Godwits Limosa limosa limosa during late incubation in The Netherlands. Of these, 15 birds were equipped with 26-g satellite transmitters with a percutaneous antenna (7.8 % ± 0.2 SD of body mass), surgically implanted in the coelom. We compared immediate nest survival, timing of migration, subsequent nest site fidelity and reproductive behaviour including egg laying with those of the remaining birds, a comparison group of 41 females. We found no effects on immediate nest survival. Fledging success and subsequent southward and northward migration patterns of the implanted birds conformed to the expectations, and arrival time on the breeding grounds in 2010–2012 did not differ from the comparison group. Compared with the comparison group, in the year after implantation, implanted birds were equally faithful to the nest site and showed equal territorial behaviour, but a paucity of behaviours indicating nests or clutches. In the 3 years after implantation, the yearly apparent survival of implanted birds was 16 % points lower. Despite intense searching, we found only three eggs of two implanted birds; all were deformed. A similarly deformed egg was reported in a similarly implanted Whimbrel Numenius phaeopus returning to breed in central Alaska. The presence in the body cavity of an object slightly smaller than a normal egg may thus lead to egg malformation and, likely, reduced egg viability. That the use of implanted satellite transmitters in these large shorebirds

Eating Like a Bird.

Science.gov (United States)

Brothers, Chris; Fortner, Rosanne W.

This teacher guide and student workbook set contains two learning activities, designed for fifth through ninth grade students, that concentrate on the adaptations of shorebird beaks for a variety of habitats and food sources, and the effect of toxic chemicals in the food chain on the birds. In activity A, students discover how shorebirds are…

Energetics of growth in semi-precocial shorebird chicks in a warm environment : The African black oystercatcher, Haematopus moquini

NARCIS (Netherlands)

Tjorve, Kathleen M. C.; Underhill, Les G.; Visser, G. Henk

2007-01-01

We studied prefledging growth, energy expenditure and time budgets of African Black Oystercatcher, Haematopus moquini, chicks on Robben Island, Western Cape, South Africa. The aim of the study was to investigate the effect of parental feeding on the growth and energetics of semi-precocial shorebird

Diving behavior of the reef manta ray links coral reefs with adjacent deep pelagic habitats

KAUST Repository

Braun, Camrin D.

2014-02-06

Recent successful efforts to increase protection for manta rays has highlighted the lack of basic ecological information, including vertical and horizontal movement patterns, available for these species. We deployed pop-up satellite archival transmitting tags on nine reef manta rays, Manta alfredi, to determine diving behaviors and vertical habitat use. Transmitted and archived data were obtained from seven tagged mantas over deployment periods of 102-188 days, including three recovered tags containing 2.6 million depth, temperature, and light level data points collected every 10 or 15 seconds. Mantas frequented the upper 10 m during daylight hours and tended to occupy deeper water throughout the night. Six of the seven individuals performed a cumulative 76 deep dives (>150 m) with one individual reaching 432 m, extending the known depth range of this coastal, reef-oriented species and confirming its role as an ecological link between epipelagic and mesopelagic habitats. Mean vertical velocities calculated from high-resolution dive data (62 dives >150 m) from three individuals suggested that mantas may use gliding behavior during travel and that this behavior may prove more efficient than continuous horizontal swimming. The behaviors in this study indicate manta rays provide a previously unknown link between the epi- and mesopelagic layers of an extremely oligotrophic marine environment and provide evidence of a third marine species that utilizes gliding to maximize movement efficiency. © 2014 Braun et al.

Juvenile flatfish in the northern Baltic Sea - long-term decline and potential links to habitat characteristics

Science.gov (United States)

Jokinen, Henri; Wennhage, Håkan; Ollus, Victoria; Aro, Eero; Norkko, Alf

2016-01-01

Flatfish in the northern Baltic Sea are facing multiple environmental pressures due to on-going large-scale ecosystem changes linked to eutrophication and climate change. Shallow juvenile habitats of flatfishes are expected to be especially susceptible to these environmental pressures. Using previously unpublished historical and present-state data on juvenile flatfish in nursery areas along the Finnish coast we demonstrate a drastic (up to 40 ×) decline in 1-Y-O flounder densities since the 1980s and a particularly low current occurrence of both flounders and turbots in several known juvenile habitats. As a consequence of ongoing coastal eutrophication vegetation coverage and filamentous algae have generally increased in shallow areas. We examined the predicted negative effect of vegetation/algae by exploring quantitative relationships between juvenile flatfish (flounder and turbot) occurrence and vegetation/algae among other environmental factors in shallow juvenile habitats. Despite sparse occurrence of juveniles we found a significant negative relationship between flatfish abundance and vegetation cover, implicating eutrophication as a potential major driver affecting the value of juvenile habitat. Shallow littoral habitats play a particularly central role for flatfish due to the spatial concentration of fish in these areas during the critical juvenile stage. Despite their importance, these areas have been relatively poorly studied in the northern Baltic Sea, which makes it difficult to quantify overall changes in environmental conditions and to relate these changes to flatfish recruitment. The low present-state flatfish densities recorded preclude strong inferences of the role of habitat quality to be drawn. Our study does, however, provide a baseline for future assessment. Based on existing evidence, we cannot thus establish any bottlenecks but hypothesize that the current low occurrence of juvenile flatfish, and the population decline of flounder on the

Application of ground-truth for classification and quantification of bird movements on migratory bird habitat initiative sites in southwest Louisiana: final report

Science.gov (United States)

Barrow, Wylie C.; Baldwin, Michael J.; Randall, Lori A.; Pitre, John; Dudley, Kyle J.

2013-01-01

This project was initiated to assess migrating and wintering bird use of lands enrolled in the Natural Resources Conservation Service’s (NRCS) Migratory Bird Habitat Initiative (MBHI). The MBHI program was developed in response to the Deepwater Horizon oil spill in 2010, with the goal of improving/creating habitat for waterbirds affected by the spill. In collaboration with the University of Delaware (UDEL), we used weather surveillance radar data (Sieges 2014), portable marine radar data, thermal infrared images, and visual observations to assess bird use of MBHI easements. Migrating and wintering birds routinely make synchronous flights near dusk (e.g., departure during migration, feeding flights during winter). Weather radars readily detect birds at the onset of these flights and have proven to be useful remote sensing tools for assessing bird-habitat relations during migration and determining the response of wintering waterfowl to wetland restoration (e.g., Wetlands Reserve Program lands). However, ground-truthing is required to identify radar echoes to species or species group. We designed a field study to ground-truth a larger-scale, weather radar assessment of bird use of MBHI sites in southwest Louisiana. We examined seasonal bird use of MBHI fields in fall, winter, and spring of 2011-2012. To assess diurnal use, we conducted total area surveys of MBHI sites in the afternoon, collecting data on bird species composition, abundance, behavior, and habitat use. In the evenings, we quantified bird activity at the MBHI easements and described flight behavior (i.e., birds landing in, departing from, circling, or flying over the MBHI tract). Our field sampling captured the onset of evening flights and spanned the period of collection of the weather radar data analyzed. Pre- and post-dusk surveys were conducted using a portable radar system and a thermal infrared camera. Landbirds, shorebirds, and wading birds were commonly found on MBHI fields during diurnal

Linking hard and soft traits: Physiology, morphology and anatomy interact to determine habitat affinities to soil water availability in herbaceous dicots.

Science.gov (United States)

Belluau, Michaël; Shipley, Bill

2018-01-01

Species' habitat affinities along environmental gradients should be determined by a combination of physiological (hard) and morpho-anatomical (soft) traits. Using a gradient of soil water availability, we address three questions: How well can we predict habitat affinities from hard traits, from soft traits, and from a combination of the two? How well can we predict species' physiological responses to drought (hard traits) from their soft traits? Can we model a causal sequence as soft traits → hard traits → species distributions? We chose 25 species of herbaceous dicots whose affinities for soil moisture have already been linked to 5 physiological traits (stomatal conductance and net photosynthesis measured at soil field capacity, water use efficiency, stomatal conductance and soil water potential measured when leaves begin to wilt). Under controlled conditions in soils at field capacity, we measured five soft traits (leaf dry matter content, specific leaf area, leaf nitrogen content, stomatal area, specific root length). Soft traits alone were poor predictors (R2 = 0.129) while hard traits explained 48% of species habitat affinities. Moreover, hard traits were significantly related to combinations of soft traits. From a priori biological knowledge and hypothesized ecological links we built a path model showing a sequential pattern soft traits → hard traits → species distributions and accounting for 59.6% (p = 0.782) of habitat wetness. Both direct and indirect causal relationships existed between soft traits, hard traits and species' habitat preferences. The poor predictive abilities of soft traits alone were due to the existence of antagonistic and synergistic direct and indirect effects of soft traits on habitat preferences mediated by the hard traits. To obtain a more realistic model applicable to a population level, it has to be tested in an experiment including species competition for water supply.

Evaluating methodological assumptions of a catch-curve survival estimation of unmarked precocial shorebird chickes

Science.gov (United States)

McGowan, Conor P.; Gardner, Beth

2013-01-01

Estimating productivity for precocial species can be difficult because young birds leave their nest within hours or days of hatching and detectability thereafter can be very low. Recently, a method for using a modified catch-curve to estimate precocial chick daily survival for age based count data was presented using Piping Plover (Charadrius melodus) data from the Missouri River. However, many of the assumptions of the catch-curve approach were not fully evaluated for precocial chicks. We developed a simulation model to mimic Piping Plovers, a fairly representative shorebird, and age-based count-data collection. Using the simulated data, we calculated daily survival estimates and compared them with the known daily survival rates from the simulation model. We conducted these comparisons under different sampling scenarios where the ecological and statistical assumptions had been violated. Overall, the daily survival estimates calculated from the simulated data corresponded well with true survival rates of the simulation. Violating the accurate aging and the independence assumptions did not result in biased daily survival estimates, whereas unequal detection for younger or older birds and violating the birth death equilibrium did result in estimator bias. Assuring that all ages are equally detectable and timing data collection to approximately meet the birth death equilibrium are key to the successful use of this method for precocial shorebirds.

Concentrations of 17 elements, including mercury, and their relationship to fitness measures in arctic shorebirds and their eggs.

Science.gov (United States)

Hargreaves, Anna L; Whiteside, Douglas P; Gilchrist, Grant

2010-07-15

Exposure to contaminants is one hypothesis proposed to explain the global decline in shorebirds, and this is of particular concern in the arctic. However, little information exists on contaminant levels in arctic-breeding shorebirds, especially in Canada. We studied potential contaminants in three biparental shorebird species nesting in Nunavut, Canada: ruddy turnstones (Arenaria interpres), black-bellied plovers (Pluvialis squatarola) and semipalmated plovers (Charadrius semipalmatus). Blood, feathers and eggs were analyzed for As, Be, Cd, Co, Cr, Cu, Fe, Hg, Mn, Mo, Ni, Pb, Sb, Se, Tl, V, and Zn. We assessed whether element concentrations a) differed among species and sexes, b) were correlated among pairs and their eggs, and c) were related to fitness endpoints, namely body condition, blood-parasite load, nest survival days, and hatching success. Non-essential elements were found at lower concentrations than essential elements, with the exception of Hg. Maximum Hg levels in blood approached those associated with toxicological effects in other bird species, but other elements were well below known toxicological thresholds. Reproductive success was negatively correlated with paternal Hg and maternal Pb, although these effects were generally weak and varied among tissues. Element levels were positively correlated within pairs for blood-Hg (turnstones) and feather-Ni and Cr (semipalmated plovers); concentrations in eggs and maternal blood were never correlated. Concentrations of many elements differed among species, but there was no evidence that any species had higher overall exposure to non-essential metals. In conclusion, whereas we found little evidence that exposure to the majority of these elements is leading to declines of the species studied here, Hg levels were of potential concern and both Hg and Pb warrant further monitoring. Copyright 2010 Elsevier B.V. All rights reserved.

Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios

Science.gov (United States)

Matchett, Elliott L.; Fleskes, Joseph

2018-01-01

California's Central Valley provides critical, but threatened habitat and food resources for migrating and wintering waterfowl, shorebirds, and other waterbirds. The Central Valley is comprised of nine basins that were defined by the Central Valley Joint Venture (CVJV) to assist in conservation planning. Basins vary in composition and extent of habitats, which primarily include croplands and wetlands that rely on water supplies shared with other competing human and environmental uses. Changes in climate, urban development, and water supply management are uncertain and could reduce future availability of water supplies supporting waterbird habitats and limit effectiveness of wetland restoration planned by the CVJV to support wintering waterbirds. We modeled 17 plausible scenarios including combinations of three climate projections, three urbanization rates, and five water supply management options to promote agricultural and urban water uses, with and without wetland restoration. Our research examines the reduction in quantity and quality of habitats during the fall migration-wintering period by basin under each scenario, and the efficacy of planned wetland restoration to compensate reductions in flooded areas of wetland habitats. Scenario combinations of projected climate, urbanization, and water supply management options reduced availability of flooded cropland and wetland habitats during fall-winter and degraded the quality of seasonal wetlands (i.e., summer-irrigation for improved forage production), though the extent and frequency of impacts varied by basin. Planned wetland restoration may substantially compensate for scenario-related effects on wetland habitats in each basin. However, results indicate that Colusa, Butte, Sutter, San Joaquin, and Tulare Basins may require additional conservation to support summer-irrigation of seasonal wetlands and winter-flooding of cropland habitats. Still further conservation may be required to provide sufficient areas of

Linking habitat management and conservation biocontrol through gut-content analysis

Science.gov (United States)

Increasing the habitat diversity of agricultural fields can lead to more effective biocontrol of arthropod pests. Annual cropping systems are exposed to frequent disturbance and lack habitat diversity; therefore it is important to develop strategies that can improve ecosystem services such as bioco...

Ambient temperature does not affect fuelling rate in absence of digestive constraints in long-distance migrant shorebird fuelling up in captivity

NARCIS (Netherlands)

Petit, Magali; Vezina, Francois; Piersma, Theunis; Heldmaier, G.

Pre-flight fuelling rates in free-living red knots Calidris canutus, a specialized long-distance migrating shorebird species, are positively correlated with latitude and negatively with temperature. The single published hypothesis to explain these relationships is the heat load hypothesis that

Linking pipefishes and seahorses to their habitat: implications for species conservation in the Venice lagoon

Directory of Open Access Journals (Sweden)

Luca Scapin

2015-11-01

Full Text Available Seagrass meadows of the Venice lagoon (Northern Adriatic Sea, Italy are spatially heterogeneous systems, with attributes such as degree of coverage and plant assemblages varying along multiple environmental gradients. They play a particularly relevant role in conservation of fish diversity, since they provide vital habitats for pipefish and seahorse species (family Syngnathidae. Aim of the study was to investigate the diversity of syngnathid assemblages in the Venice lagoon and link species distributions to habitat characteristics, in order to evaluate the importance of seagrass meadows of the lagoon for the conservation of these species. The analyses of this work are based on eight years of fish data collected between 2001 and 2014 in 186 shallow water sites across the entire lagoon. Water parameters, presence of macroalgae, seagrass presence and coverage, as well as meadows species composition, were considered as predictors in a modelling framework, to explain the distribution of each species. Overall, two species of seahorses and seven species of pipefishes including the Adriatic endemism Syngnathus taenionotus were found. Three species (S. abaster, S. typhle and Nerophis ophidion were the most abundant, together accounting for 98% of total individuals caught. Both seagrass presence and its coverage resulted significant predictors, with densities of S. abaster, S. typhle, N. ophidion and Hippocampus guttulatus being positively associated with higher percentages of seagrass cover. In addition, some evidences suggested a different functionality of different meadow types in supporting both S. typhle and N. ophidion. The study highlighted the role of Venice lagoon as biodiversity hotspot for syngnathids, since it supports nine out of the 10 species known in the Mediterranean (with only S. phlegon being absent. Results also suggested the importance of habitat management, which should aim at compensating for seagrass habitat loss and therefore

Linking sex differences in corticosterone with individual reproductive behaviour and hatch success in two species of uniparental shorebirds.

Science.gov (United States)

Edwards, Darryl B; Chin, Eunice H; Burness, Gary; Gilchrist, H Grant; Schulte-Hostedde, Albrecht I

2013-09-01

In birds, corticosterone (CORT) appears to facilitate reproductive activity because baseline and stress-induced CORT levels are elevated in breeding individuals compared with other times of the year. In particular, CORT is lower in the sex providing most of the parental care (i.e., incubation), which could be an important adaptation to tolerate stressors that result in abandoning reproduction. Therefore, one explanation for sex differences in CORT is that lower levels are favoured during the incubation/parental phase of reproduction. Using two species of uniparental shorebird - polyandrous red phalaropes (Phalaropus fulicarius) and polygynous white-rumped sandpipers (Calidris fuscicollis) - we predicted that the incubating sex would have lower baseline and stress-induced CORT, and incubating individuals with lower CORT would more effectively defend nests against a simulated intrusion, would return more quickly afterwards, and would ultimately have higher hatch success. We found that phalaropes followed the predicted pattern: incubating individuals (males) had lower baseline and stress-induced CORT than females but for baseline CORT these differences existed prior to males commencing incubation. Incubating male phalaropes with lower baseline and stress-induced CORT returned to incubate more quickly after a disturbance and there was non-significant tendency for baseline CORT to be lower in successful nests. In sandpipers, we observed no sex differences and no significant relationships between individual CORT levels and nest defence behaviours or hatch success. Our results demonstrate that in phalaropes at least, selection favours lower baseline and stress-induced CORT during the nesting period. These results can explain sex differences in stress-induced levels of CORT, however sex differences in baseline CORT were present prior to incubation. Copyright © 2013 Elsevier Inc. All rights reserved.

Variación temporal y espacial de aves playeras en la laguna Barra de Navidad, Jalisco, en tres temporadas no reproductivas Temporal and spatial variation of shorebirds in Barra de Navidad lagoon, Jalisco, during three non-breeding seasons

Directory of Open Access Journals (Sweden)

Salvador Hernández

2012-09-01

programs. The aim of this work was to describe shorebirds temporal and spatial distribution in Barra de Navidad lagoon during three non-breeding seasons (1999-2000, 2006-2007 and 2008-2009. For this, monthly censuses were performed from November-April with the purpose of registering all the shorebirds species. We were able to identify 19 shorebirds species (three residents and 16 winter visitors, of which Charadrius wilsonia, Limosa fedoa and Tringa semipalmata were the most abundant. The greater number of species was registered for November, December and March of the first and third seasons. The greater number of individuals was registered when birds were feeding during low tides, mainly in December, January and February of the first and third seasons. At low tide, there was a great number of species and individuals in zone C. This area had muddy substrates that were exposed during low tides and were used to feed. Barra de Navidad lagoon provided suitable habitats for feeding and resting for resident and migratory birds. Twelve of the 19 species were considered as priority within the Mexican bird conservation strategy. However, these habitats are threatened by human activities performed in the nearby areas of the lagoon that may have negative consequences for the distribution, abundance and conservation of these species.

Riparian landscapes: Linking geodiversity with habitat and biodiversity

Science.gov (United States)

Chmieleski, Jana; Danzeisen, Laura

2017-04-01

Keywords: Oder valley, biodiversity, geodiversity River landscapes of all scales originally showed a high diversity of structures and habitats at a small spatial entity, such as the stream beds, terrasses, sand and gravel banks. This variety, with a lot of different elements, patches and patterns, represents not only a variety of geoelements or geomorhological features but also a large biodiversity, both of habitats and species. Riparian landscapes are both, a natural as well as a geoheritage, often even a cultural heritage (sustainabe land use practices). Embankments, utilization for agriculture, constructions for navigation, management measures lead to a strong loss of these structures. This impacts the value of the landscape as well ecosystem functions, not only the biodiversity and the geodiversity but also the recreation function or the aesthetic values. A case study from the National Park Lower Oder Valley in the Northeastern part of Germany, wich is also part of a Geopark („Eiszeitland am Oderrand") presents the connections of the diversity of geomorphological features with biodiversity and shows the loss of features (loss of values) due to intensive utilisation by using GIS-analysis and landscape-metrics. The Northern part of the Oder valley (National Park, transnational protection area of Germany and Poland) have been modified by man since centuries but even so remained in near-natural state that allows semi-(natural) stream dynamics. While the Oder's reparian zone is marked by the stream itself, by its bayous, reed beds, periodically flooded wet meadows and by its natural riparian forest the mineral morainic plateaus are marked by semi-natural forests and dry grasslands. Two areas of different degradation states, a) near-natural and wilderness area and b) grassland area will be compared in order to identify: quantity and extent of features, relation of measure and coverage, connectivity with other features, quantity and types of habitats (with

Cost-benefit analysis of mollusc eating in a shorebird I : Foraging and processing costs estimated by the doubly labelled water method

NARCIS (Netherlands)

Piersma, T; Dekinga, A; van Gils, JA; Achterkamp, B; Visser, GH

2003-01-01

Although the energy costs of foraging and food processing in vertebrates may be considerable, they have rarely been quantified separately. Here we present estimates for both cost factors based on a series of trials with a shorebird, the red knot Calidris canutus, fed natural and artificial prey

Landsat TM inventory and assessment of waterbird habitat in the southern altiplano of South America

Science.gov (United States)

Boyle, T.P.; Caziani, S.M.; Waltermire, R.G.

2004-01-01

The diverse set of wetlands in southern altiplano of South America supports a number of endemic and migratory waterbirds. These species include endangered endemic flamingos and shorebirds that nest in North America and winter in the altiplano. This research developed maps from nine Landsat Thematic Mapper (TM) images (254,300 km2) to provide an inventory of aquatic waterbird habitats. Image processing software was used to produce a map with a classification of wetlands according to the habitat requirements of different types of waterbirds. A hierarchical procedure was used to, first, isolate the bodies of water within the TM image; second, execute an unsupervised classification on the subsetted image to produce 300 signatures of cover types, which were further subdivided as necessary. Third, each of the classifications was examined in the light of field data and personal experience for relevance to the determination of the various habitat types. Finally, the signatures were applied to the entire image and other adjacent images to yield a map depicting the location of the various waterbird habitats in the southern altiplano. The data sets referenced with a global positioning system receiver were used to test the classification system. Multivariate analysis of the bird communities censused at each lake by individual habitats indicated a salinity gradient, and then the depth of the water separated the birds. Multivariate analysis of the chemical and physical data from the lakes showed that the variation in lakes were significantly associated with difference in depth, transparency, latitude, elevation, and pH. The presence of gravel bottoms was also one of the qualities distinguishing a group of lakes. This information will be directly useful to the Flamingo Census Project and serve as an element for risk assessment for future development.

Linking occurrence and fitness to persistence: Habitat-based approach for endangered Greater Sage-Grouse

Science.gov (United States)

Aldridge, Cameron L.; Boyce, Mark S.

2007-01-01

Detailed empirical models predicting both species occurrence and fitness across a landscape are necessary to understand processes related to population persistence. Failure to consider both occurrence and fitness may result in incorrect assessments of habitat importance leading to inappropriate management strategies. We took a two-stage approach to identifying critical nesting and brood-rearing habitat for the endangered Greater Sage-Grouse (Centrocercus urophasianus) in Alberta at a landscape scale. First, we used logistic regression to develop spatial models predicting the relative probability of use (occurrence) for Sage-Grouse nests and broods. Secondly, we used Cox proportional hazards survival models to identify the most risky habitats across the landscape. We combined these two approaches to identify Sage-Grouse habitats that pose minimal risk of failure (source habitats) and attractive sink habitats that pose increased risk (ecological traps). Our models showed that Sage-Grouse select for heterogeneous patches of moderate sagebrush cover (quadratic relationship) and avoid anthropogenic edge habitat for nesting. Nests were more successful in heterogeneous habitats, but nest success was independent of anthropogenic features. Similarly, broods selected heterogeneous high-productivity habitats with sagebrush while avoiding human developments, cultivated cropland, and high densities of oil wells. Chick mortalities tended to occur in proximity to oil and gas developments and along riparian habitats. For nests and broods, respectively, approximately 10% and 5% of the study area was considered source habitat, whereas 19% and 15% of habitat was attractive sink habitat. Limited source habitats appear to be the main reason for poor nest success (39%) and low chick survival (12%). Our habitat models identify areas of protection priority and areas that require immediate management attention to enhance recruitment to secure the viability of this population. This novel

VT Wildlife Linkage Habitat

Data.gov (United States)

Vermont Center for Geographic Information — (Link to Metadata) The Wildlife Linkage Habitat Analysis uses landscape scale data to identify or predict the location of potentially significant wildlife linkage...

Linking hydrologic, physical and chemical habitat environments for the potential assessment of fish community rehabilitation in a developing city

Science.gov (United States)

Zhao, C. S.; Yang, S. T.; Liu, C. M.; Dou, T. W.; Yang, Z. L.; Yang, Z. Y.; Liu, X. L.; Xiang, H.; Nie, S. Y.; Zhang, J. L.; Mitrovic, S. M.; Yu, Q.; Lim, R. P.

2015-04-01

Aquatic ecological rehabilitation is increasingly attracting considerable public and research attention. An effective method that requires less data and expertise would help in the assessment of rehabilitation potential and in the monitoring of rehabilitation activities as complicated theories and excessive data requirements on assemblage information make many current assessment models expensive and limit their wide use. This paper presents an assessment model for restoration potential which successfully links hydrologic, physical and chemical habitat factors to fish assemblage attributes drawn from monitoring datasets on hydrology, water quality and fish assemblages at a total of 144 sites, where 5084 fish were sampled and tested. In this model three newly developed sub-models, integrated habitat index (IHSI), integrated ecological niche breadth (INB) and integrated ecological niche overlap (INO), are established to study spatial heterogeneity of the restoration potential of fish assemblages based on gradient methods of habitat suitability index and ecological niche models. To reduce uncertainties in the model, as many fish species as possible, including important native fish, were selected as dominant species with monitoring occurring over several seasons to comprehensively select key habitat factors. Furthermore, a detrended correspondence analysis (DCA) was employed prior to a canonical correspondence analysis (CCA) of the data to avoid the "arc effect" in the selection of key habitat factors. Application of the model to data collected at Jinan City, China proved effective reveals that three lower potential regions that should be targeted in future aquatic ecosystem rehabilitation programs. They were well validated by the distribution of two habitat parameters: river width and transparency. River width positively influenced and transparency negatively influenced fish assemblages. The model can be applied for monitoring the effects of fish assemblage restoration

Stable isotope and pen feeding trial studies confirm the value of horseshoe crab Limulus polyphemus eggs to spring migrant shorebirds in Delaware Bay

Science.gov (United States)

Haramis, G.M.; Link, W.A.; Osenton, P.C.; Carter, Daniel B.; Weber, R.G.; Clark, N.A.; Teece, M.A.; Mizrahi, D.S.

2007-01-01

We used stable isotope (SI) methods in combination with pen feeding trials to determine the importance of eggs of the Atlantic horseshoe crab Limulus polyphemus to migratory fattening of red knots Calidris canutus rufa and ruddy turnstones Arenaria interpres morinella during spring stopover in Delaware Bay. By manifesting measurable fractionation (ca +3?) and rapid turnover, blood plasma *15 nitrogen proved a functional marker for SI diet tracking during the short 3-week stopover. Blood samples from free-ranging knots (3 data sets) and turnstones (1 data set) produced similar convergence of plasma *15 N signatures with increasing body mass that indicated highly similar diets. Asymptotes deviated slightly (0.3? to 0.7?) from that of captive shorebirds fed a diet of only crab eggs during stopover, thus confirming a strong crab egg-shorebird linkage. The plasma *15N crab-egg diet asymptote was enriched ca +4.5? and therefore readily discriminated from that of either blue mussels Mytilus edulis or coquina clams Donax variabilis, the most likely alternative prey of knots in Delaware Bay. Crab eggs were highly palatable to captive knots and turnstones which achieved rates of mass gain (3?11 g/d) comparable to that of free-ranging birds. Peak consumption rates during hyperphagic events were 23,940 and 19,360 eggs/bird/d, respectively. The empirical conversions of eggs consumed to body mass gained (5,017 eggs/g for knots and 4,320 eggs/g for turnstones) indicate the large quantities of crab eggs required for the maintenance of these shorebird populations during stopover.

Persistent use of a shorebird staging site in the Yellow Sea despite severe declines in food resources implies a lack of alternatives

NARCIS (Netherlands)

Zhang, Shou-Dong; Ma, Zhijun; Choi, Chi-Yeung; Peng, He-Bo; Bai, Qing-Quan; Liu, Wen-Liang; Tan, Kun; Melville, David S.; He, Peng; Chan, Ying-Chi; Piersma, Theunis; van Gils, Jan A.

2018-01-01

Many shorebird populations are in decline along the East Asian-Australasian Flyway. The rapid loss of coastal wetlands in the Yellow Sea, which provide critical stop-over sites during migration, is believed to be the cause of the alarming trends. The Yalu Jiang coastal wetland, a protected area in

77 FR 29358 - Kenai National Wildlife Refuge, Soldotna, AK; Environmental Impact Statement for the Shadura...

Science.gov (United States)

2012-05-17

...: Meetings: We will locally announce any future meeting dates, times, and locations, at least 10 days prior... Mountains, with their glaciers, rise to more than 6,500 feet. Treeless alpine and subalpine habitats are... staging area and nesting habitat for shorebirds and waterfowl throughout the spring, summer, and fall. The...

Effects of geolocators on hatching success, return rates, breeding movements, and change in body mass in 16 species of Arctic-breeding shorebirds

NARCIS (Netherlands)

Weiser, Emily L; Lanctot, Richard B.; Brown, Stephen C; Alves, José A.; Battley, Phil; Bentzen, Rebecca; Bêty, Joël; Bishop, Mary Anne; Boldenow, Megan; Bollache, Loïc; Casler, Bruce; Christie, Maureen; T. Coleman, Jonathan; Conklin, Jesse; B. English, Willow; Gates, H. River; Gilg, Olivier; Giroux, Marie-Andrée; Gosbell, Ken; Hassell, Chris J.; Helmericks, Jim; Johnson, Andrew; Katrínardóttir, Borgný; Koivula, Kari; Kwon, Eunbi; Lamarre, Jean-Francois; Lang, Johannes; Lank, David B.; Lecomte, Nicolas; Liebezeit, Joe; Loverti, Vanessa; McKinnon, Laura; Minton, Clive D. T.; Mizrahi, David; Minton, Clive D. T.; Nol, Erica; Pakanen, Veli-Matti; Perz, Johanna; Porter, Ron; Rausch, Jennie; Reneerkens, Jeroen; Rönkä, Nelli; Saalfeld, Sarah; Senner, Nathan; Sittler, Benoit; Smith, Paul A.; Sowl, Kristine; Taylor, Audrey; Ward, David H.; Yezerinac, Stephen; Sandercock, Brett K.

2016-01-01

Background: Geolocators are useful for tracking movements of long-distance migrants, but potential negative effects on birds have not been well studied. We tested for effects of geolocators (0.8–2.0 g total, representing 0.1–3.9 % of mean body mass) on 16 species of migratory shorebirds, including

Ecomorphology and phylogenetic risk: Implications for habitat reconstruction using fossil bovids.

Science.gov (United States)

Scott, Robert S; Barr, W Andrew

2014-08-01

Reconstructions of paleohabitats are necessary aids in understanding hominin evolution. The morphology of species from relevant sites, understood in terms of functional relationships to habitat (termed ecomorphology), offers a direct link to habitat. Bovids are a speciose radiation that includes many habitat specialists and are abundant in the fossil record. Thus, bovids are extremely common in ecomorphological analyses. However, bovid phylogeny and habitat preference are related, which raises the possibility that analyses linking habitat with morphology are not 'taxon free' but 'taxon-dependent.' Here we analyze eight relative dimensions and one shape index of the metatarsal for a sample of 72 bovid species and one antilocaprid. The selected variables have been previously shown to have strong associations with habitat and to have functional explanations for these associations. Phylogenetic generalized least squares analyses of these variables, including habitat and size, resulted in estimates for the parameter lambda (used to model phylogenetic signal) varying from zero to one. Thus, while phylogeny, morphology, and habitat all march together among the bovids, the odds that phylogeny confounds ecomorphological analyses may vary depending on particular morphological characteristics. While large values of lambda do not necessarily indicate that habitat differences are unimportant drivers of morphology, we consider the low value of lambda for relative metatarsal width suggestive that conclusions about habitat built on observations of this particular morphology carry with them less 'phylogenetic risk.' We suggest that the way forward for ecomorphology is grounded in functionally relevant observations and careful consideration of phylogeny designed to bracket probable habitat preferences appropriately. Separate consideration of different morphological variables may help to determine the level of 'phylogenetic risk' attached to conclusions linking habitat and morphology

Linking population viability, habitat suitability, and landscape simulation models for conservation planning

Science.gov (United States)

Michael A. Larson; Frank R., III Thompson; Joshua J. Millspaugh; William D. Dijak; Stephen R. Shifley

2004-01-01

Methods for habitat modeling based on landscape simulations and population viability modeling based on habitat quality are well developed, but no published study of which we are aware has effectively joined them in a single, comprehensive analysis. We demonstrate the application of a population viability model for ovenbirds (Seiurus aurocapillus)...

Experimental challenge and pathology of highly pathogenic avian influenza virus H5N1 in dunlin (Calidris alpina), an intercontinental migrant shorebird species.

Science.gov (United States)

Hall, Jeffrey S; Franson, J Christian; Gill, Robert E; Meteyer, Carol U; TeSlaa, Joshua L; Nashold, Sean; Dusek, Robert J; Ip, Hon S

2011-09-01

Shorebirds (Charadriiformes) are considered one of the primary reservoirs of avian influenza. Because these species are highly migratory, there is concern that infected shorebirds may be a mechanism by which highly pathogenic avian influenza virus (HPAIV) H5N1 could be introduced into North America from Asia. Large numbers of dunlin (Calidris alpina) migrate from wintering areas in central and eastern Asia, where HPAIV H5N1 is endemic, across the Bering Sea to breeding areas in Alaska. Low pathogenic avian influenza virus has been previously detected in dunlin, and thus, dunlin represent a potential risk to transport HPAIV to North America. To date no experimental challenge studies have been performed in shorebirds. Wild dunlin were inoculated intranasally and intrachoanally various doses of HPAIV H5N1. The birds were monitored daily for virus excretion, disease signs, morbidity, and mortality. The infectious dose of HPAIV H5N1 in dunlin was determined to be 10(1.7) EID(50)/100 μl and that the lethal dose was 10(1.83) EID(50)/100 μl. Clinical signs were consistent with neurotropic disease, and histochemical analyses revealed that infection was systemic with viral antigen and RNA most consistently found in brain tissues. Infected birds excreted relatively large amounts of virus orally (10(4) EID(50)) and smaller amounts cloacally. Dunlin are highly susceptible to infection with HPAIV H5N1. They become infected after exposure to relatively small doses of the virus and if they become infected, they are most likely to suffer mortality within 3-5 days. These results have important implications regarding the risks of transport and transmission of HPAIV H5N1 to North America by this species and raises questions for further investigation. Published 2011. This article is a US Government work and is in the public domain in the USA.

Long-term habitat changes in a protected area: Implications for herpetofauna habitat management and restoration.

Directory of Open Access Journals (Sweden)

Chantel E Markle

Full Text Available Point Pelee National Park, located at the southern-most tip of Canada's mainland, historically supported a large number of herpetofauna species; however, despite nearly a century of protection, six snake and five amphibian species have disappeared, and remaining species-at-risk populations are thought to be in decline. We hypothesized that long-term changes in availability and distribution of critical habitat types may have contributed to the disappearance of herpetofauna. To track habitat changes we used aerial image data spanning 85 years (1931-2015 and manually digitized and classified image data using a standardized framework. Change-detection analyses were used to evaluate the relative importance of proportionate loss and fragmentation of 17 habitat types. Marsh habitat diversity and aquatic connectivity has declined since 1931. The marsh matrix transitioned from a graminoid and forb shallow marsh interspersed with water to a cattail dominated marsh, altering critical breeding, foraging, and overwintering habitat. Reduced diversity of marsh habitats appears to be linked to the expansion of invasive Phragmites australis, which invaded prior to 2000. Loss of open habitats such as savanna and meadow has reduced availability of high quality thermoregulation habitat for reptiles. Restoration of the northwestern region and tip of Point Pelee National Park to a mixed landscape of shallow wetlands (cattail, graminoid, forb, open water and eradication of dense Phragmites stands should improve habitat diversity. Our results suggest that long-term landscape changes resulting from habitat succession and invasive species can negatively affect habitat suitability for herpetofauna and protection of land alone does not necessarily equate to protection of sensitive herpetofauna.

Long-term habitat changes in a protected area: Implications for herpetofauna habitat management and restoration.

Science.gov (United States)

Markle, Chantel E; Chow-Fraser, Gillian; Chow-Fraser, Patricia

2018-01-01

Point Pelee National Park, located at the southern-most tip of Canada's mainland, historically supported a large number of herpetofauna species; however, despite nearly a century of protection, six snake and five amphibian species have disappeared, and remaining species-at-risk populations are thought to be in decline. We hypothesized that long-term changes in availability and distribution of critical habitat types may have contributed to the disappearance of herpetofauna. To track habitat changes we used aerial image data spanning 85 years (1931-2015) and manually digitized and classified image data using a standardized framework. Change-detection analyses were used to evaluate the relative importance of proportionate loss and fragmentation of 17 habitat types. Marsh habitat diversity and aquatic connectivity has declined since 1931. The marsh matrix transitioned from a graminoid and forb shallow marsh interspersed with water to a cattail dominated marsh, altering critical breeding, foraging, and overwintering habitat. Reduced diversity of marsh habitats appears to be linked to the expansion of invasive Phragmites australis, which invaded prior to 2000. Loss of open habitats such as savanna and meadow has reduced availability of high quality thermoregulation habitat for reptiles. Restoration of the northwestern region and tip of Point Pelee National Park to a mixed landscape of shallow wetlands (cattail, graminoid, forb, open water) and eradication of dense Phragmites stands should improve habitat diversity. Our results suggest that long-term landscape changes resulting from habitat succession and invasive species can negatively affect habitat suitability for herpetofauna and protection of land alone does not necessarily equate to protection of sensitive herpetofauna.

Monitoring habitat restoration projects: U.S. Fish and Wildlife Service Pacific Region Partners for Fish and Wildlife Program and Coastal Program Protocol

Science.gov (United States)

Woodward, Andrea; Hollar, Kathy

2011-01-01

Refuges, Contribute to the implementation of the State Comprehensive Wildlife Conservation Strategies, and Help achieve the objectives of the National Fish Habitat Partnerships and regionally based bird conservation plans (for example, North American Waterfowl Management Plan, U.S. Pacific Island Shorebird Conservation Plans, Intermountain West Regional Shorebird Plan, etc.). The Partners Program accomplishes these priorities by: Developing and maintaining strong partnerships, and delivering on-the-ground habitat restoration projects designed to reestablish habitat function and restore natural processes; Addressing key habitat limiting factors for declining species; Providing corridors for wildlife and decrease impediments to native fish and wildlife migration; and Enhancing native plant communities by reducing invasive species and improving native species composition. The Coastal Program is a voluntary fish and wildlife conservation program that focuses on watershed-scale, long-term collaborative resource planning and on-the-ground restoration projects in high-priority coastal areas. The Coastal Program conducts planning and restoration work on private, State, and Federal lands, and partnerships with other agencies-Native American Tribes, citizens, and organizations are emphasized. Coastal Program goals include restoring and protecting coastal habitat, providing technical and cost-sharing assistance where appropriate, supporting community-based restoration, collecting and developing information on the status of and threats to fish and wildlife, and using outreach to promote stewardship of coastal resources. The diversity of habitats and partners in Region 1 present many opportunities for conducting restoration projects. Faced with this abundance of opportunity, the Partners Program and Coastal Program must ensure that limited staffing and project dollars are allocated to benefit the highest priority resources and achieve the highest quality results for Federal trust

Seasonal narwhal habitat associations in the high Arctic

DEFF Research Database (Denmark)

Laidre, K.L.; Heide-Jørgensen, M.P.; Logdson, M.L.

2004-01-01

Movements and behavior of top marine predators are often closely linked with productive oceanic fronts or regional prey aggregations. Consequently, it is of interest to quantify habitat needs and preferences, which can facilitate predictions of conditions favoring persistence and success....... Multivariate habitat models of movements and dive behavior of narwhals (Monodon monoceros, Linnaeus) in the eastern Canadian high Arctic and West Greenland were developed using data collected from satellite telemetry studies on three separate sub-populations. Twenty-six narwhals were captured between 1993...... and 2000 and fitted with satellite-linked time-depth recorders. Geographic positions of whales at 24-h time steps were linked to dive behavior variables compressed on a daily scale, including numbers of dives to different target depths or durations, time near the surface, daily dive rate, and travel speed...

The nutritional nexus: linking niche, habitat variability and prey composition in a generalist marine predator.

Science.gov (United States)

Machovsky-Capuska, Gabriel E; Miller, Mark G R; Silva, Fabiola R O; Amiot, Christophe; Stockin, Karen A; Senior, Alistair M; Schuckard, Rob; Melville, David; Raubenheimer, David

2018-06-05

1.Our understanding of the niche concept will remain limited while the quantity and range of different food types eaten remains a dominant proxy for niche breadth, as this does not account for the broad ecological context that governs diet. Linking nutrition, physiology and behaviour are critical to predict the extent to which a species adjusts its nutritional niche breadth at the levels of prey ("prey composition niche", defined as the range of prey compositions eaten), and diet ("realized nutritional niche" is the range of diets composed through feeding on the prey). 2.Here we studied adult-chick rearing Australasian gannets (Morus serrator) to propose an integrative approach using sea surface temperature anomalies (SSTa), geographic location and bathymetry over different years, to explore their relationship with the nutritional composition of prey and diets (i.e., prey composition and nutritional niche breadth), habitat use and foraging behavior. 3.We found that gannets feed on prey that varied widely in their nutritional composition (have a broad prey composition niche), and composed diets from these prey that likewise varied in composition (have a broad realized nutritional niche), suggesting generalism at two levels of macronutrient selection. 4.Across seasons, we established "nutritional landscapes" (hereafter nutriscapes), linking the nutritional content of prey (wet mass protein to-lipid ratio -P:L-) to the most likely geographic area of capture and bathymetry. Nutriscapes varied in their P:L from 6.06 to 15.28, over time, space and bathymetry (0 to 150 m). 5.During warm water events (strong positive SSTa), gannets expanded their foraging habitat, increased their foraging trip duration and consumed prey and diets with low macronutrient content (wet mass proportions of P and L). They were also constrained to the smallest prey composition and realized nutritional niche breadths. 6.Our findings are consistent with previous suggestions that dietary generalism

Linking Vegetation Structure and Spider Diversity in Riparian and Adjacent Habitats in Two Rivers of Central Argentina: An Analysis at Two Conceptual Levels.

Science.gov (United States)

Griotti, Mariana; Muñoz-Escobar, Christian; Ferretti, Nelson E

2017-08-01

The link between vegetation structure and spider diversity has been well explored in the literature. However, few studies have compared spider diversity and its response to vegetation at two conceptual levels: assemblage (species diversity) and ensemble (guild diversity). Because of this, we studied spider diversity in riparian and adjacent habitats of a river system from the Chacoan subregion in central Argentina and evaluated their linkage with vegetation structure at these two levels. To assess vegetation structure, we measured plant species richness and vegetation cover in the herb and shrub - tree layers. We collected spiders for over 6 months by using vacuum netting, sweep netting and pitfall traps. We collected 3,808 spiders belonging to 119 morphospecies, 24 families and 9 guilds. At spider assemblage level, SIMPROF analysis showed significant differences among studied habitats. At spider ensemble level, nevertheless, we found no significant differences among habitats. Concerning the linkage with vegetation structure, BIOENV test showed that spider diversity at either assemblage or ensemble level was not significantly correlated with the vegetation variables assessed. Our results indicated that spider diversity was not affected by vegetation structure. Hence, even though we found a pattern in spider assemblages among habitats, this could not be attributed to vegetation structure. In this study, we show that analyzing a community at two conceptual levels will be useful for recognizing different responses of spider communities to vegetation structure in diverse habitat types. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Habitat stability, predation risk and 'memory syndromes'.

Science.gov (United States)

Dalesman, S; Rendle, A; Dall, S R X

2015-05-27

Habitat stability and predation pressure are thought to be major drivers in the evolutionary maintenance of behavioural syndromes, with trait covariance only occurring within specific habitats. However, animals also exhibit behavioural plasticity, often through memory formation. Memory formation across traits may be linked, with covariance in memory traits (memory syndromes) selected under particular environmental conditions. This study tests whether the pond snail, Lymnaea stagnalis, demonstrates consistency among memory traits ('memory syndrome') related to threat avoidance and foraging. We used eight populations originating from three different habitat types: i) laboratory populations (stable habitat, predator-free); ii) river populations (fairly stable habitat, fish predation); and iii) ditch populations (unstable habitat, invertebrate predation). At a population level, there was a negative relationship between memories related to threat avoidance and food selectivity, but no consistency within habitat type. At an individual level, covariance between memory traits was dependent on habitat. Laboratory populations showed no covariance among memory traits, whereas river populations showed a positive correlation between food memories, and ditch populations demonstrated a negative relationship between threat memory and food memories. Therefore, selection pressures among habitats appear to act independently on memory trait covariation at an individual level and the average response within a population.

Linking hydroclimate to fish phenology and habitat use with ichthyographs

Science.gov (United States)

Rebecca L. Flitcroft; Sarah L. Lewis; Ivan Arismendi; Rachel LovellFord; Mary V. Santelmann; Mohammad Safeeq; Gordon Grant; Kyle A. Young

2016-01-01

Streamflow and water temperature (hydroclimate) influence the life histories of aquatic biota. The relationship between streamflow and temperature varies with climate, hydrogeomorphic setting, and season. Life histories of native fishes reflect, in part, their adaptation to regional hydroclimate (flow and water temperature), local habitats, and natural disturbance...

Use of functional traits to assess changes in stream fish assemblages across a habitat gradient

Directory of Open Access Journals (Sweden)

Mariela Domiciano Ribeiro

Full Text Available Abstract Functional traits are important for understanding the links between species occurrence and environmental conditions. Identifying these links makes it possible to predict changes in species composition within communities under specific environmental conditions. We used functional traits related to habitat use and trophic ecology in order to assess the changes in fish community composition between streams with varying habitat structure. The relationship between the species traits and habitat characteristics was analyzed using an RLQ ordination analysis. Although species were widely distributed in habitats with different structures, physical conditions did favor some species based on their functional characteristics. Eight functional traits were found to be associated with stream habitat structure, allowing us to identify traits that may predict the susceptibility of fish species to physical habitat degradation.

Habitat stability, predation risk and ‘memory syndromes’

OpenAIRE

S. Dalesman; A. Rendle; S.R.X. Dall

2015-01-01

Habitat stability and predation pressure are thought to be major drivers in the evolutionary maintenance of behavioural syndromes, with trait covariance only occurring within specific habitats. However, animals also exhibit behavioural plasticity, often through memory formation. Memory formation across traits may be linked, with covariance in memory traits (memory syndromes) selected under particular environmental conditions. This study tests whether the pond snail, Lymnaea stagnalis, demonst...

Foraging in a tidally structured environment by red knots (Calidris canutus) : Ideal, but not free

NARCIS (Netherlands)

van Gils, JA; Spaans, B; Dekinga, A; Piersma, T; Speirs, D.C.

Besides the "normal" challenge of obtaining adequate intake rates in a patchy and dangerous world, shorebirds foraging in intertidal habitats face additional environmental hurdles. The tide forces them to commute between a roosting site and feeding grounds, twice a day. Moreover, because intertidal

Prey type and foraging ecology of Sanderlings

NARCIS (Netherlands)

Grond, K.; Ntiamoa-Baidu, Y.; Piersma, T.; Reneerkens, J.

2015-01-01

Sanderlings (Calidris alba) are long-distance migratory shorebirds with a non-breeding range that spans temperate and tropical coastal habitats. Breeding in the High Arctic combined with non-breeding seasons in the tropics necessitate long migrations, which are energetically demanding. On an annual

Habitat and Recreational Fishing Opportunity in Tampa Bay: Linking Ecological and Ecosystem Services to Human Beneficiaries

Science.gov (United States)

Estimating value of estuarine habitat to human beneficiaries requires that we understand how habitat alteration impacts function through both production and delivery of ecosystem goods and services (EGS). Here we expand on the habitat valuation technique of Bell (1997) with an es...

Chapter 5: Application of state-and-transition models to evaluate wildlife habitat

Science.gov (United States)

Anita T. Morzillo; Pamela Comeleo; Blair Csuti; Stephanie Lee

2014-01-01

Wildlife habitat analysis often is a central focus of natural resources management and policy. State-and-transition models (STMs) allow for simulation of landscape level ecological processes, and for managers to test “what if” scenarios of how those processes may affect wildlife habitat. This chapter describes the methods used to link STM output to wildlife habitat to...

Foraging in a tidally structured environment by red knots (Calidris canutus): Ideal, but not free

NARCIS (Netherlands)

Van Gils, J.A.; Spaans, B.; Dekinga, A.; Piersma, T.

2006-01-01

Besides the “normal” challenge of obtaining adequate intake rates in a patchy and dangerous world, shorebirds foraging in intertidal habitats face additional environmental hurdles. The tide forces them to commute between a roosting site and feeding grounds, twice a day. Moreover, because intertidal

Avian response to early tidal salt marsh restoration at former commercial salt evaporation ponds in San Francisco Bay, California, USA

Science.gov (United States)

Athearn, Nicole D.; Takekawa, John Y.; Shinn, Joel

2009-01-01

Restoration of former commercial salt evaporation ponds in the San Francisco Bay estuary is intended to reverse a severe decline (>79%) in tidal salt marshes. San Francisco Bay is a critical migratory stopover site and wintering area for shorebirds and waterfowl, and salt ponds are important high tide roosting and foraging areas. Conservation of past bird abundance is a stated goal of area restoration projects, and early adaptive management will be critical for achieving this objective. However, initial avian response at sites restored to tidal flow may not be indicative of long-term results. For example, winter shorebirds at a 529 ha pond breached in 2002 showed a marked increase in shorebird abundance following breaching. Shorebirds comprised 1% of area totals during 1999-2002 and increased to 46% during 2003-2008. These changes accompanied increased tidal range and sedimentation, but minimal vegetation establishment. Conversely, a fully vegetated, restored 216 ha pond in the same system consistently supported less than 2% of all waterbirds in the region. Early restoration may temporarily increase habitat, but managed ponds will be needed for long-term waterbird abundance within a restored pond-marsh system.

Habitat stability, predation risk and ‘memory syndromes’

Science.gov (United States)

Dalesman, S.; Rendle, A.; Dall, S.R.X.

2015-01-01

Habitat stability and predation pressure are thought to be major drivers in the evolutionary maintenance of behavioural syndromes, with trait covariance only occurring within specific habitats. However, animals also exhibit behavioural plasticity, often through memory formation. Memory formation across traits may be linked, with covariance in memory traits (memory syndromes) selected under particular environmental conditions. This study tests whether the pond snail, Lymnaea stagnalis, demonstrates consistency among memory traits (‘memory syndrome’) related to threat avoidance and foraging. We used eight populations originating from three different habitat types: i) laboratory populations (stable habitat, predator-free); ii) river populations (fairly stable habitat, fish predation); and iii) ditch populations (unstable habitat, invertebrate predation). At a population level, there was a negative relationship between memories related to threat avoidance and food selectivity, but no consistency within habitat type. At an individual level, covariance between memory traits was dependent on habitat. Laboratory populations showed no covariance among memory traits, whereas river populations showed a positive correlation between food memories, and ditch populations demonstrated a negative relationship between threat memory and food memories. Therefore, selection pressures among habitats appear to act independently on memory trait covariation at an individual level and the average response within a population. PMID:26013966

Breeding latitude drives individual schedules in a trans-hemispheric migrant bird

NARCIS (Netherlands)

Conklin, J.R.; Battley, Phil F.; Potter, Murray A.; Fox, James W.

2010-01-01

Despite clear benefits of optimal arrival time on breeding grounds, migration schedules may vary with an individual bird’s innate quality, non-breeding habitat or breeding destination. Here, we show that for the bar-tailed godwit (Limosa lapponica baueri), a shorebird that makes the longest known

Effects of flow dynamics on the aquatic-terrestrial transition zone (ATTZ) of lower Missouri river sandbars with implications for selected biota

Science.gov (United States)

Tracy-Smith, Emily; Galat, David L.; Jacobson, Robert B.

2012-01-01

Sandbars are an important aquatic terrestrial transition zone (ATTZ) in the active channel of rivers that provide a variety of habitat conditions for riverine biota. Channelization and flow regulation in many large rivers have diminished sandbar habitats and their rehabilitation is a priority. We developed sandbar-specific models of discharge-area relationships to determine how changes in flow regime affect the area of different habitat types within the submerged sandbar ATTZ (depth) and exposed sandbar ATTZ (elevation) for a representative sample of Lower Missouri River sandbars. We defined six different structural habitat types within the sandbar ATTZ based on depth or exposed elevation ranges that are important to different biota during at least part of their annual cycle for either survival or reproduction. Scenarios included the modelled natural flow regime, current managed flow regime and two environmental flow options, all modelled within the contemporary river active channel. Thirteen point and wing-dike sandbars were evaluated under four different flow scenarios to explore the effects of flow regime on seasonal habitat availability for foraging of migratory shorebirds and wading birds, nesting of softshell turtles and nursery of riverine fishes. Managed flows provided more foraging habitat for shorebirds and wading birds and more nursery habitat for riverine fishes within the channelized reach sandbar ATTZ than the natural flow regime or modelled environmental flows. Reduced summer flows occurring under natural and environmental flow alternatives increased exposed sandbar nesting habitat for softshell turtle hatchling emergence. Results reveal how management of channelized and flow regulated large rivers could benefit from a modelling framework that couples hydrologic and geomorphic characteristics to predict habitat conditions for a variety of biota.

Habitat-specific population growth of a farmland bird.

Directory of Open Access Journals (Sweden)

Debora Arlt

Full Text Available BACKGROUND: To assess population persistence of species living in heterogeneous landscapes, the effects of habitat on reproduction and survival have to be investigated. METHODOLOGY/PRINCIPAL FINDINGS: We used a matrix population model to estimate habitat-specific population growth rates for a population of northern wheatears Oenanthe oenanthe breeding in farmland consisting of a mosaic of distinct habitat (land use types. Based on extensive long-term data on reproduction and survival, habitats characterised by tall field layers (spring- and autumn-sown crop fields, ungrazed grasslands displayed negative stochastic population growth rates (log lambda(s: -0.332, -0.429, -0.168, respectively, that were markedly lower than growth rates of habitats characterised by permanently short field layers (pastures grazed by cattle or horses, and farmyards, log lambda(s: -0.056, +0.081, -0.059. Although habitats differed with respect to reproductive performance, differences in habitat-specific population growth were largely due to differences in adult and first-year survival rates, as shown by a life table response experiment (LTRE. CONCLUSIONS/SIGNIFICANCE: Our results show that estimation of survival rates is important for realistic assessments of habitat quality. Results also indicate that grazed grasslands and farmyards may act as source habitats, whereas crop fields and ungrazed grasslands with tall field layers may act as sink habitats. We suggest that the strong decline of northern wheatears in Swedish farmland may be linked to the corresponding observed loss of high quality breeding habitat, i.e. grazed semi-natural grasslands.

Seasonal variation in coastal marine habitat use by the European shag: Insights from fine scale habitat selection modeling and diet

Science.gov (United States)

Michelot, Candice; Pinaud, David; Fortin, Matthieu; Maes, Philippe; Callard, Benjamin; Leicher, Marine; Barbraud, Christophe

2017-07-01

Studies of habitat selection by higher trophic level species are necessary for using top predator species as indicators of ecosystem functioning. However, contrary to terrestrial ecosystems, few habitat selection studies have been conducted at a fine scale for coastal marine top predator species, and fewer have coupled diet data with habitat selection modeling to highlight a link between prey selection and habitat use. The aim of this study was to characterize spatially and oceanographically, at a fine scale, the habitats used by the European Shag Phalacrocorax aristotelis in the Special Protection Area (SPA) of Houat-Hœdic in the Mor Braz Bay during its foraging activity. Habitat selection models were built using in situ observation data of foraging shags (transect sampling) and spatially explicit environmental data to characterize marine benthic habitats. Observations were first adjusted for detectability biases and shag abundance was subsequently spatialized. The influence of habitat variables on shag abundance was tested using Generalized Linear Models (GLMs). Diet data were finally confronted to habitat selection models. Results showed that European shags breeding in the Mor Braz Bay changed foraging habitats according to the season and to the different environmental and energetic constraints. The proportion of the main preys also varied seasonally. Rocky and coarse sand habitats were clearly preferred compared to fine or muddy sand habitats. Shags appeared to be more selective in their foraging habitats during the breeding period and the rearing of chicks, using essentially rocky areas close to the colony and consuming preferentially fish from the Labridae family and three other fish families in lower proportions. During the post-breeding period shags used a broader range of habitats and mainly consumed Gadidae. Thus, European shags seem to adjust their feeding strategy to minimize energetic costs, to avoid intra-specific competition and to maximize access

Habitat hydraulic models - a tool for Danish stream quality assessment?

DEFF Research Database (Denmark)

Olsen, Martin

and hydromorphological and chemical characteristics has to be enlightened (EUROPA, 2005). This study links catchment hydrology, stream discharge and physical habitat in a small Danish stream, the stream Ledreborg, and discusses the utility of habitat hydraulic models in relation to the present criteria and methods used......).  Hydromorphological conditions in the stream are measured through field study, using a habitat mapping approach and modelled using a habitat hydraulic model (RHYHABSIM). Using RHYHABSIM and both "site-specific" and general HSI's, Weighted Usable Area (WUA) for the trout population at different discharges is assessed...... and differences between simulated WUA using "site-specific" and general habitat preferences are discussed. In RHYHABSIM it is possible to use two different approaches to investigate the hydromorphological conditions in a river, the habitat mapping approach used in this project and the representative reach...

Range Expansion of Moose in Arctic Alaska Linked to Warming and Increased Shrub Habitat.

Directory of Open Access Journals (Sweden)

Ken D Tape

Full Text Available Twentieth century warming has increased vegetation productivity and shrub cover across northern tundra and treeline regions, but effects on terrestrial wildlife have not been demonstrated on a comparable scale. During this period, Alaskan moose (Alces alces gigas extended their range from the boreal forest into tundra riparian shrub habitat; similar extensions have been observed in Canada (A. a. andersoni and Eurasia (A. a. alces. Northern moose distribution is thought to be limited by forage availability above the snow in late winter, so the observed increase in shrub habitat could be causing the northward moose establishment, but a previous hypothesis suggested that hunting cessation triggered moose establishment. Here, we use recent changes in shrub cover and empirical relationships between shrub height and growing season temperature to estimate available moose habitat in Arctic Alaska c. 1860. We estimate that riparian shrubs were approximately 1.1 m tall c. 1860, greatly reducing the available forage above the snowpack, compared to 2 m tall in 2009. We believe that increases in riparian shrub habitat after 1860 allowed moose to colonize tundra regions of Alaska hundreds of kilometers north and west of previous distribution limits. The northern shift in the distribution of moose, like that of snowshoe hares, has been in response to the spread of their shrub habitat in the Arctic, but at the same time, herbivores have likely had pronounced impacts on the structure and function of these shrub communities. These northward range shifts are a bellwether for other boreal species and their associated predators.

Range expansion of moose in arctic Alaska linked to warming and increased shrub habitat

Science.gov (United States)

Tape, Ken D.; Gustine, David D.; Reuss, Roger W.; Adams, Layne G.; Clark, Jason A.

2016-01-01

Twentieth century warming has increased vegetation productivity and shrub cover across northern tundra and treeline regions, but effects on terrestrial wildlife have not been demonstrated on a comparable scale. During this period, Alaskan moose (Alces alces gigas) extended their range from the boreal forest into tundra riparian shrub habitat; similar extensions have been observed in Canada (A. a. andersoni) and Eurasia (A. a. alces). Northern moose distribution is thought to be limited by forage availability above the snow in late winter, so the observed increase in shrub habitat could be causing the northward moose establishment, but a previous hypothesis suggested that hunting cessation triggered moose establishment. Here, we use recent changes in shrub cover and empirical relationships between shrub height and growing season temperature to estimate available moose habitat in Arctic Alaska c. 1860. We estimate that riparian shrubs were approximately 1.1 m tall c. 1860, greatly reducing the available forage above the snowpack, compared to 2 m tall in 2009. We believe that increases in riparian shrub habitat after 1860 allowed moose to colonize tundra regions of Alaska hundreds of kilometers north and west of previous distribution limits. The northern shift in the distribution of moose, like that of snowshoe hares, has been in response to the spread of their shrub habitat in the Arctic, but at the same time, herbivores have likely had pronounced impacts on the structure and function of these shrub communities. These northward range shifts are a bellwether for other boreal species and their associated predators.

Spatial patterns of goose grubbing suggest elevated grubbing in dry habitats linked to early snowmelt

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Åshild Ø. Pedersen

2013-05-01

Full Text Available The western Palaearctic tundra is a breeding habitat for large populations of European geese. After their arrival in spring, pink-footed geese (Anser brachyrhynchus forage extensively on below-ground plant parts, using a feeding technique called grubbing that has substantial impact on the tundra vegetation. Previous studies have shown a high frequency of grubbing in lowland fen vegetation. In the present study, we examined the occurrence of grubbing in other habitat types on Spitsbergen, in the Arctic archipelago of Svalbard. Goose grubbing was surveyed along 19 altitudinal transects, going from the valley bottom to altitudes dominated by scree. Grubbing was more frequent in the wet habitat type at low altitudes compared to the drier habitat type at higher altitudes. For the dry habitat type, a higher frequency of grubbing was found in study plots with a south-east facing exposure where snowmelt is expected to be early. This suggests that pink-footed geese primarily use dry vegetation types for grubbing when they are snow-free in early spring and the availability of snow-free patches of the preferred wet vegetation types in the lowlands is limited. Dry vegetation types have poorer recovery rates from disturbance than wet ones. Sites with early snowmelt and dry vegetation types may therefore be at greater risk of long-term habitat degradation. We conclude that the high growth rate of the Svalbard-breeding pink-footed goose population suggests that increasing impacts of grubbing can be expected and argue that a responsible monitoring of the effects on the tundra ecosystem is crucial.

Mapping Thermal Habitat of Ectotherms Based on Behavioral Thermoregulation in a Controlled Thermal Environment

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Fei, T.; Skidmore, A.; Liu, Y.

2012-07-01

Thermal environment is especially important to ectotherm because a lot of physiological functions rely on the body temperature such as thermoregulation. The so-called behavioural thermoregulation function made use of the heterogeneity of the thermal properties within an individual's habitat to sustain the animal's physiological processes. This function links the spatial utilization and distribution of individual ectotherm with the thermal properties of habitat (thermal habitat). In this study we modelled the relationship between the two by a spatial explicit model that simulates the movements of a lizard in a controlled environment. The model incorporates a lizard's transient body temperatures with a cellular automaton algorithm as a way to link the physiology knowledge of the animal with the spatial utilization of its microhabitat. On a larger spatial scale, 'thermal roughness' of the habitat was defined and used to predict the habitat occupancy of the target species. The results showed the habitat occupancy can be modelled by the cellular automaton based algorithm at a smaller scale, and can be modelled by the thermal roughness index at a larger scale.

Using catenas for GIS-based mapping of NW Mediterranean littoral habitats

Science.gov (United States)

Mariani, Simone; Cefalì, Maria Elena; Terradas, Marc; Chappuis, Eglantine; Ballesteros, Enric

2014-06-01

Studies aimed at describing habitats and mapping their distributions are pivotal to implementing management plans and to effectively guide conservation measures. We developed a novel approach of data collection and entry (CAT-LIT) to establish a detailed cartography of the littoral habitats found along the Catalan coast (Spain). Field data were recorded using coded, two-digit hierarchical lists (e.g. Aa, Ab, etc.) of horizons found at each point along the coast, called catenas. The horizons were either dominated by species (on the rocky bottoms) or sediment types (on the beaches) and corresponded to LPRE, EUNIS and CORINE habitats. Catenas were transferred into a database and calculations about the extent of bottom types, habitats, and catenas themselves along the coast were carried out with GIS tools. In addition, habitat link richness was calculated and represented using network analysis programs. The application of CAT-LIT to the Catalan coast showed that the habitats dominated by the lichen Verrucaria amphibia and the flattened barnacle Euraphia depressa and those dominated by the barnacle Chthamalus spp. were almost ubiquitous. Those dominated by the red alga Corallina elongata, the mussel Mytilus galloprovincialis and the red alga Rissoella verruculosa were also common. Because of the frequency of their connections, those habitats formed a huge hub of links in the networks. By using catenas, the habitats can be viewed using GIS based programs keeping the catena as the main informational and ecological unit. The catenas allow maximum compactness when vertically distributed habitats are to be shown on a 2D map. The complete cartography and dataset on the spatial distribution of the littoral habitats from Catalonia is valuable for coastal management and conservation to study changes in the habitat distribution and relate such changes to anthropogenic pressures. Furthermore, the CAT-LIT can be easily adapted to shores of other seas and oceans to obtain accurate

Linking snake habitat use to nest predation risk in grassland birds: the dangers of shrub cover.

Science.gov (United States)

Klug, Page E; Jackrel, Sara L; With, Kimberly A

2010-03-01

Extremes in rangeland management, varying from too-frequent fire and intensive grazing to the suppression of both, threaten rangeland ecosystems worldwide. Intensive fire and grazing denude and homogenize vegetation whereas their suppression increases woody cover. Although habitat loss is implicated in grassland bird declines, degradation through intensive management or neglect also decreases breeding habitat and may reduce nesting success through increased rates of nest predation. Snakes are important nest predators, but little is known about how habitat use in snakes relates to predation risk for grassland birds nesting within tallgrass prairie subjected to different grazing and fire frequencies. We evaluated nest survival in the context of habitat used by nesting songbirds and two bird-eating snakes, the eastern yellowbelly racer Coluber constrictor flaviventris and Great Plains ratsnake Pantherophis emoryi. Daily nest survival rates decreased with increasing shrub cover and decreasing vegetation height, which characterize grasslands that have been neglected or intensively managed, respectively. Discriminant function analysis revealed that snake habitats were characterized by higher shrub cover, whereas successful nests were more likely to occur in areas with tall grass and forbs but reduced shrub cover. Because snakes often use shrub habitat, birds nesting in areas with increased shrub cover may be at higher risk of nest predation by snakes in addition to other predators known to use shrub habitat (e.g., mid-sized carnivores and avian predators). Depredated nests also occurred outside the discriminant space of the snakes, indicating that other predators (e.g., ground squirrels Spermophilus spp. and bullsnakes Pituophis catenifer) may be important in areas with denuded cover. Targeted removal of shrubs may increase nest success by minimizing the activity of nest predators attracted to shrub cover.

Individual-based ecology of coastal birds.

Science.gov (United States)

Stillman, Richard A; Goss-Custard, John D

2010-08-01

Conservation objectives for non-breeding coastal birds (shorebirds and wildfowl) are determined from their population size at coastal sites. To advise coastal managers, models must predict quantitatively the effects of environmental change on population size or the demographic rates (mortality and reproduction) that determine it. As habitat association models and depletion models are not able to do this, we developed an approach that has produced such predictions thereby enabling policy makers to make evidence-based decisions. Our conceptual framework is individual-based ecology, in which populations are viewed as having properties (e.g. size) that arise from the traits (e.g. behaviour, physiology) and interactions of their constituent individuals. The link between individuals and populations is made through individual-based models (IBMs) that follow the fitness-maximising decisions of individuals and predict population-level consequences (e.g. mortality rate) from the fates of these individuals. Our first IBM was for oystercatchers Haematopus ostralegus and accurately predicted their density-dependent mortality. Subsequently, IBMs were developed for several shorebird and wildfowl species at several European sites, and were shown to predict accurately overwinter mortality, and the foraging behaviour from which predictions are derived. They have been used to predict the effect on survival in coastal birds of sea level rise, habitat loss, wind farm development, shellfishing and human disturbance. This review emphasises the wider applicability of the approach, and identifies other systems to which it could be applied. We view the IBM approach as a very useful contribution to the general problem of how to advance ecology to the point where we can routinely make meaningful predictions of how populations respond to environmental change.

Evaluation of landscape level habitat characteristics of golden eagle habitat in Northwestern Mexico

OpenAIRE

Bravo Vinaja, Maria Guadalupe

2012-01-01

Golden eagles (Aquila chrysaetos canadensis Linnaeus 1758) are declining in some areas throughout their Nearctic range (Sauer et al. 2011). This reduction is linked to changes in their habitat caused by human activities. Golden eagles inhabit an extensive range of environments (Watson 1997, Kochert et al. 2002). In the American Continent, the golden eagleâ s range encompasses Alaska, Canada, the United States and the Northern and Central portions of Mexico. Northern golden eagle populations...

Feeding ecology of arctic-nesting sandpipers during spring migration through the prairie pothole region

Science.gov (United States)

Eldridge, J.L.; Krapu, G.L.; Johnson, D.H.

2009-01-01

We evaluated food habits of 4 species of spring-migrant calidrid sandpipers in the Prairie Pothole Region (PPR) of North Dakota. Sandpipers foraged in several wetland classes and fed primarily on aquatic dipterans, mostly larvae, and the midge family Chironomidae was the primary food eaten. Larger sandpiper species foraged in deeper water and took larger larvae than did smaller sandpipers. The diverse wetland habitats that migrant shorebirds use in the PPR suggest a landscape-level approach be applied to wetland conservation efforts. We recommend that managers use livestock grazing and other tools, where applicable, to keep shallow, freshwater wetlands from becoming choked with emergent vegetation limiting chironomid production and preventing shorebird use.

Linking microbial diversity and functionality of arctic glacial surface habitats.

Science.gov (United States)

Lutz, Stefanie; Anesio, Alexandre M; Edwards, Arwyn; Benning, Liane G

2017-02-01

Distinct microbial habitats on glacial surfaces are dominated by snow and ice algae, which are the critical players and the dominant primary colonisers and net producers during the melt season. Here for the first time we have evaluated the role of these algae in association with the full microbial community composition (i.e., algae, bacteria, archaea) in distinct surface habitats and on 12 glaciers and permanent snow fields in Svalbard and Arctic Sweden. We cross-correlated these data with the analyses of specific metabolites such as fatty acids and pigments, and a full suite of potential critical physico-chemical parameters including major and minor nutrients, and trace metals. It has been shown that correlations between single algal species, metabolites, and specific geochemical parameters can be used to unravel mixed metabolic signals in complex communities, further assign them to single species and infer their functionality. The data also clearly show that the production of metabolites in snow and ice algae is driven mainly by nitrogen and less so by phosphorus limitation. This is especially important for the synthesis of secondary carotenoids, which cause a darkening of glacial surfaces leading to a decrease in surface albedo and eventually higher melting rates. © 2016 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

The influence of a hot environment on parental cooperation of a ground-nesting shorebird, the Kentish plover Charadrius alexandrinus

Directory of Open Access Journals (Sweden)

Javed Salim

2010-01-01

Full Text Available Abstract Background Parental care often increases offspring survival, but is costly to the parents. A trade-off between the cost and benefit of care is expected, so that when care provisioning by both parents is essential for the success of young, for instance in extremely cold or hot environments, the parents should rear their young together. We investigated the latter hypothesis in a ground nesting shorebird, the Kentish plover Charadrius alexandrinus in an extremely hot environment, the Arabian Desert. Midday ground temperature was often above 50°C in our study site in Abu Dhabi (United Arab Emirates, thus leaving the eggs unattended even for a few minute risks overheating and death of embryos. Results Through the use of video surveillance systems we recorded incubation routines of male and female Kentish plovers at 28 nests over a full day (24 h. We show that ambient temperature had a significant influence on incubation behaviour of both sexes, and the relationships are often non-linear. Coordinated incubation between parents was particularly strong in midday with incubation shared approximately equally between the male and the female. The enhanced biparental incubation was due to males increasing their nest attendance with ambient temperature. Conclusions Our results suggest biparental care is essential during incubation in the Kentish plover in extremely hot environments. Shared incubation may also help the parents to cope with heat stress themselves: they can relieve each other frequently from incubation duties. We suggest that once the eggs have hatched the risks associated with hot temperature are reduced: the chicks become mobile, and they gradually develop thermoregulation. When biparental care of young is no longer essential one parent may desert the family. The relaxed demand of the offspring may contribute to the diverse breeding systems exhibited by many shorebirds.

Using dynamic Brownian bridge movement modelling to measure temporal patterns of habitat selection.

Science.gov (United States)

Byrne, Michael E; Clint McCoy, J; Hinton, Joseph W; Chamberlain, Michael J; Collier, Bret A

2014-09-01

Accurately describing animal space use is vital to understanding how wildlife use habitat. Improvements in GPS technology continue to facilitate collection of telemetry data at high spatial and temporal resolutions. Application of the recently introduced dynamic Brownian bridge movement model (dBBMM) to such data is promising as the method explicitly incorporates the behavioural heterogeneity of a movement path into the estimated utilization distribution (UD). Utilization distributions defining space use are normally estimated for time-scales ranging from weeks to months, obscuring much of the fine-scale information available from high-volume GPS data sets. By accounting for movement heterogeneity, the dBBMM provides a rigorous, behaviourally based estimate of space use between each set of relocations. Focusing on UDs generated between individual sets of locations allows us to quantify fine-scale circadian variation in habitat use. We used the dBBMM to estimate UDs bounding individual time steps for three terrestrial species with different life histories to illustrate how the method can be used to identify fine-scale variations in habitat use. We also demonstrate how dBBMMs can be used to characterize circadian patterns of habitat selection and link fine-scale patterns of habitat use to behaviour. We observed circadian patterns of habitat use that varied seasonally for a white-tailed deer (Odocoileus virginianus) and coyote (Canis latrans). We found seasonal patterns in selection by the white-tailed deer and were able to link use of conifer forests and agricultural fields to behavioural state of the coyote. Additionally, we were able to quantify the date in which a Rio Grande wild turkey (Meleagris gallopavo intermedia) initiated laying as well as when during the day, she was most likely to visit the nest site to deposit eggs. The ability to quantify circadian patterns of habitat use may have important implications for research and management of wildlife

Biota connect aquatic habitats throughout freshwater ecosystem mosaics

Science.gov (United States)

Schofield, Kate A.; Alexander, Laurie C.; Ridley, Caroline E.; Vanderhoof, Melanie; Fritz, Ken M.; Autrey, Bradley; DeMeester, Julie; Kepner, William G.; Lane, Charles R.; Leibowitz, Scott; Pollard, Amina I.

2018-01-01

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.

Understanding Existing Salmonid Habitat Availability and Connectivity to Improve River Management

Science.gov (United States)

Duffin, J.; Yager, E.; Tonina, D.; Benjankar, R. M.

2017-12-01

In the Pacific Northwest river restoration is common for salmon conservation. Mangers need methods to help target restoration to problem areas in rivers to create habitat that meets a species' needs. Hydraulic models and habitat suitability curves provide basic information on habitat availability and overall quality, but these analyses need to be expanded to address habitat quality based on the accessibility of habitats required for multiple life stages. Scientists are starting to use connectivity measurements to understand the longitudinal proximity of habitat patches, which can be used to address the habitat variability of a reach. By evaluating the availability and quality of habitat and calculating the connectivity between complementary habitats, such as spawning and rearing habitats, we aim to identify areas that should be targeted for restoration. To meet these goals, we assessed Chinook salmon habitat on the Lemhi River in Idaho. The depth and velocity outputs from a 2D hydraulic model are used in conjunction with locally created habitat suitability curves to evaluate the availability and quality of habitat for multiple Chinook salmon life stages. To assess the variability of the habitat, connectivity between habitat patches necessary for different life stages is calculated with a proximity index. A spatial representation of existing habitat quality and connectivity between complimentary habitats can be linked to river morphology by the evaluation of local geomorphic characteristics, including sinuosity and channel units. The understanding of the current habitat availability for multiple life stage needs, the connectivity between these habitat patches, and their relationship with channel morphology can help managers better identify restoration needs and direct their limited resources.

Modeling effects of conservation grassland losses on amphibian habitat

Science.gov (United States)

Mushet, David M.; Neau, Jordan L.; Euliss, Ned H.

2014-01-01

Amphibians provide many ecosystem services valued by society. However, populations have declined globally with most declines linked to habitat change. Wetlands and surrounding terrestrial grasslands form habitat for amphibians in the North American Prairie Pothole Region (PPR). Wetland drainage and grassland conversion have destroyed or degraded much amphibian habitat in the PPR. However, conservation grasslands can provide alternate habitat. In the United States, the Conservation Reserve Program (CRP) is the largest program maintaining grasslands on agricultural lands. We used an ecosystem services model (InVEST) parameterized for the PPR to quantify amphibian habitat over a six-year period (2007–2012). We then quantified changes in availability of amphibian habitat under various land-cover scenarios representing incremental losses (10%, 25%, 50%, 75%, and 100%) of CRP grasslands from 2012 levels. The area of optimal amphibian habitat in the four PPR ecoregions modeled (i.e., Northern Glaciated Plains, Northwestern Glaciated Plains, Lake Agassiz Plain, Des Moines Lobe) declined by approximately 22%, from 3.8 million ha in 2007 to 2.9 million ha in 2012. These losses were driven by the conversion of CRP grasslands to croplands, primarily for corn and soybean production. Our modeling identified an additional 0.8 million ha (26%) of optimal amphibian habitat that would be lost if remaining CRP lands are returned to crop production. An economic climate favoring commodity production over conservation has resulted in substantial losses of amphibian habitat across the PPR that will likely continue into the future. Other regions of the world face similar challenges to maintaining amphibian habitats.

Domesticating nature? Surveillance and conservation of migratory shorebirds in the "Atlantic Flyway".

Science.gov (United States)

Whitney, Kristoffer

2014-03-01

Using a recent environmental controversy on the U.S. east coast over the conservation of red knots (Calidris canutus rufa) as a lens, I present a history of North American efforts to understand and conserve migratory shorebirds. Focusing on a few signal pieces of American legislation and their associated bureaucracies, I show the ways in which migratory wildlife have been thoroughly enrolled in efforts to quantify and protect their populations. Interactions between wildlife biologists and endangered species have been described by some scholars as "domestication"-a level of surveillance and intervention into nonhuman nature that constitutes a form of dependence. I pause to reflect on this historical trajectory, pointing out the breaks and continuities with older forms of natural history. Using the oft-mobilized Foucauldian metaphor of the panopticon as a foil, I question the utility and ethics of too-easily declaring "domesticated" wildlife an act of "biopower." Instead, I argue that Jacob von Uexküll's "umwelt" from early ecology and ethology, and more contemporary Science and Technology Studies (STS) analyses emphasizing multiple ontologies, offer more illuminating accounts of endangered species science. Neither science, conservation, nor history are well-served by the conflation of wildlife "surveillance" with the language of Foucauldian discipline. Copyright © 2013 Elsevier Ltd. All rights reserved.

A survey of endangered waterbirds on Maui and Oahu and assessment of potential impacts to waterbirds from the proposed Hawaii Geothermal Project transmission corridor. Final report

Energy Technology Data Exchange (ETDEWEB)

Evans, K.; Woodside, D.; Bruegmann, M. [Fish and Wildlife Service, Honolulu, HI (United States). Pacific Islands Office

1994-08-01

A survey of endangered waterbirds on Maui and Oahu was conducted during August and September 1993 to identify potential waterbird habitats within the general area of the proposed Hawaii Geothermal Project transmission corridor and to assess the potential impacts to endangered waterbird of installing and operating a high voltage transmission line from the Island of Hawaii to the islands of Oahu and Maui. Annual waterbird survey information and other literature containing information on specific wetland sites were summarized. Literature describing impacts of overhead transmission lines on birds was used to evaluate potential impacts of the proposed project on endangered waterbirds, resident wading birds, and migratory shorebirds and waterfowl. On Oahu, five wetland habitats supporting endangered Hawaiian waterbirds were identified within 2.5 miles of the proposed transmission line corridor. On Maui, three wetland habitats supporting endangered Hawaiian waterbirds were identified within the general area of the proposed transmission line corridor. Several of the wetlands identified on Oahu and Maui also supported resident wading birds and migratory shorebirds and waterfowl. Endangered waterbirds, resident wading birds, and migratory birds may collide with the proposed transmission lines wires. The frequency and numbers of bird collisions is expected to be greater on Oahu than on Maui because more wetland habitat exists and greater numbers of birds occur in the project area on Oahu. In addition, the endangered Hawaiian goose and the endangered Hawaiian petrel may be impacted by the proposed segment of the Hawaii Geothermal Project transmission line on Maui.

The relevance of morphology for habitat use and locomotion in two species of wall lizards

Science.gov (United States)

Gomes, Verónica; Carretero, Miguel A.; Kaliontzopoulou, Antigoni

2016-01-01

Understanding if morphological differences between organisms that occupy different environments are associated to differences in functional performance can suggest a functional link between environmental and morphological variation. In this study we examined three components of the ecomorphological paradigm - morphology, locomotor performance and habitat use - using two syntopic wall lizards endemic to the Iberian Peninsula as a case study to establish whether morphological variation is associated with habitat use and determine the potential relevance of locomotor performance for such an association. Differences in habitat use between both lizards matched patterns of morphological variation. Indeed, individuals of Podarcis guadarramae lusitanicus, which are more flattened, used more rocky environments, whereas Podarcis bocagei, which have higher heads, used more vegetation than rocks. These patterns translated into a significant association between morphology and habitat use. Nevertheless, the two species were only differentiated in some of the functional traits quantified, and locomotor performance did not exhibit an association with morphological traits. Our results suggest that the link between morphology and habitat use is mediated by refuge use, rather than locomotor performance, in this system, and advise caution when extrapolating morphology-performance-environment associations across organisms.

Prioritizing Urban Habitats for Connectivity Conservation: Integrating Centrality and Ecological Metrics.

Science.gov (United States)

Poodat, Fatemeh; Arrowsmith, Colin; Fraser, David; Gordon, Ascelin

2015-09-01

Connectivity among fragmented areas of habitat has long been acknowledged as important for the viability of biological conservation, especially within highly modified landscapes. Identifying important habitat patches in ecological connectivity is a priority for many conservation strategies, and the application of 'graph theory' has been shown to provide useful information on connectivity. Despite the large number of metrics for connectivity derived from graph theory, only a small number have been compared in terms of the importance they assign to nodes in a network. This paper presents a study that aims to define a new set of metrics and compares these with traditional graph-based metrics, used in the prioritization of habitat patches for ecological connectivity. The metrics measured consist of "topological" metrics, "ecological metrics," and "integrated metrics," Integrated metrics are a combination of topological and ecological metrics. Eight metrics were applied to the habitat network for the fat-tailed dunnart within Greater Melbourne, Australia. A non-directional network was developed in which nodes were linked to adjacent nodes. These links were then weighted by the effective distance between patches. By applying each of the eight metrics for the study network, nodes were ranked according to their contribution to the overall network connectivity. The structured comparison revealed the similarity and differences in the way the habitat for the fat-tailed dunnart was ranked based on different classes of metrics. Due to the differences in the way the metrics operate, a suitable metric should be chosen that best meets the objectives established by the decision maker.

Are population dynamics of shorebirds affected by El Niño/Southern Oscillation (ENSO) while on their non-breeding grounds in Ecuador?

Science.gov (United States)

O'Hara, Patrick D.; Haase, Ben J. M.; Elner, Robert W.; Smith, Barry D.; Kenyon, Jamie K.

2007-08-01

Declines in avian populations are a global concern, particularly for species that migrate between Arctic-temperate and tropical locations. Long-term population studies offer opportunities to detect and document ecological effects attributable to long-term climatic cycles such as the El Niño/Southern Oscillation (ENSO). In this study, we report possible population-level effects of such climatic cycles on shorebird species that use two non-breeding season sites in Ecuador (Santa Elena peninsula area, near La Libertad). During our 9-year study period (1991/1992-1999/2000), there was a particularly strong ENSO warm phase event during 1997/1998. Population trend data for three species of shorebird, Western Sandpipers ( Calidris mauri), Semipalmated Sandpipers ( C. pusilla), and Least Sandpipers ( C. minutilla), indicated abundances generally declined during the 1990s, but there was an increase in the proportion of first-year birds and their abundance in the years following the 1997/1998 ENSO warm phase. There was some support for variation in apparent survivorship associated with the onset of the ENSO warm phase event in our population models, based on capture-mark-recapture data. Following the 1997/1998 ENSO event onset, individuals for all three species were significantly lighter during the non-breeding season ( F1,3789 = 6.6, p = 0.01). Least-squares mean mass (controlling for size, sex and day of capture) for first-year birds dropped significantly more than for adults following ENSO (first-year mass loss = 0.69 ± 0.12 g; adult mass loss = 0.34 ± 0.11 g, F1,3789 = 5.31, p = 0.021), and least-squares mean mass dropped most during the period when sandpipers prepare for northward migration by gaining mass and moulting into breeding plumage. Least Sandpipers may have declined the most in mean mass following ENSO (0.76 ± 0.19 g), whereas Semipalmated Sandpipers were 0.52 ± 0.12 g lighter, and Western Sandpipers 0.40 ± 0.13 g lighter, but overall variation among

Distribución espacial y temporal de aves playeras (Orden: Charadriiformes en Laguna San Ignacio, Baja California Sur, México Temporal and spatial distribution of shorebirds (Charadriiformes at San Ignacio Lagoon, Baja California Sur, Mexico

Directory of Open Access Journals (Sweden)

Luis Francisco Mendoza

2013-03-01

Full Text Available Con la pérdida o degradación de humedales han declinado las poblaciones de algunas especies tales como las aves playeras. En vista de que ha crecido el interés internacional por los estudios ecológicos sobre estas especies, se determinó la abundancia, distribución y riqueza espacio-temporal de las aves playeras en Laguna San Ignacio, Península de Baja California. Se realizaron 12 censos mensuales (octubre 2007-septiembre 2008 en el perímetro interno de la laguna; la cual se dividió en cuatro zonas, dos al norte y dos al sur. Temporalmente las abundancias menores se presentaron en mayo (1 585 aves y las mayores en octubre (47 410. Las especies más abundantes fueron: el picopando canelo (Limosa fedoa; 55% de los registros totales, el playero occidental (Calidris mauri; 23% y el playero pihuiuí (Tringa semipalmata; 10%. Estas especies fueron más abundantes en otoño. El picopando canelo y el playero pihuiuí estabilizaron sus números en invierno y primavera y estuvieron presentes en verano en bajos números, el playero occidental mostró oscilaciones notorias. Se presentan los primeros reportes del playero rojizo del Pacifico (Calidris canutus roselaari para la zona. La riqueza y abundancia estuvieron influenciadas temporal y espacialmente por las aves migratorias. Las mayores abundancias se presentaron al sur de la laguna, probablemente por la disponibilidad del alimento. Los resultados presentes permitieron incluir al área en la Red Hemisférica de Reservas para las Aves Playeras como sitio de importancia internacional.Baja California Peninsula has several wetlands that represent important ecosystems for shorebirds. San Ignacio Lagoon is one of these sites, and supports 10% of the total abundance of shorebirds reported in this Peninsula. Since there is few information about this group in this area, we studied spatial and temporal changes in abundance and distribution of shorebirds in San Ignacio Lagoon. For this, we conducted twelve

Sex- and habitat-specific movement of an omnivorous semi-terrestrial crab controls habitat connectivity and subsidies: a multi-parameter approach.

Science.gov (United States)

Hübner, Lena; Pennings, Steven C; Zimmer, Martin

2015-08-01

Distinct habitats are often linked through fluxes of matter and migration of organisms. In particular, intertidal ecotones are prone to being influenced from both the marine and the terrestrial realms, but whether or not small-scale migration for feeding, sheltering or reproducing is detectable may depend on the parameter studied. Within the ecotone of an upper saltmarsh in the United States, we investigated the sex-specific movement of the semi-terrestrial crab Armases cinereum using an approach of determining multiple measures of across-ecotone migration. To this end, we determined food preference, digestive abilities (enzyme activities), bacterial hindgut communities (genetic fingerprint), and the trophic position of Armases and potential food sources (stable isotopes) of males versus females of different sub-habitats, namely high saltmarsh and coastal forest. Daily observations showed that Armases moved frequently between high-intertidal (saltmarsh) and terrestrial (forest) habitats. Males were encountered more often in the forest habitat, whilst gravid females tended to be more abundant in the marsh habitat but moved more frequently. Food preference was driven by both sex and habitat. The needlerush Juncus was preferred over three other high-marsh detrital food sources, and the periwinkle Littoraria was the preferred prey of male (but not female) crabs from the forest habitats; both male and female crabs from marsh habitat preferred the fiddler crab Uca over three other prey items. In the field, the major food sources were clearly vegetal, but males have a higher trophic position than females. In contrast to food preference, isotope data excluded Uca and Littoraria as major food sources, except for males from the forest, and suggested that Armases consumes a mix of C4 and C3 plants along with animal prey. Digestive enzyme activities differed significantly between sexes and habitats and were higher in females and in marsh crabs. The bacterial hindgut community

Toxin constraint explains diet choice, survival and population dynamics in a molluscivore shorebird.

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van Gils, Jan A; van der Geest, Matthijs; Leyrer, Jutta; Oudman, Thomas; Lok, Tamar; Onrust, Jeroen; de Fouw, Jimmy; van der Heide, Tjisse; van den Hout, Piet J; Spaans, Bernard; Dekinga, Anne; Brugge, Maarten; Piersma, Theunis

2013-07-22

Recent insights suggest that predators should include (mildly) toxic prey when non-toxic food is scarce. However, the assumption that toxic prey is energetically as profitable as non-toxic prey misses the possibility that non-toxic prey have other ways to avoid being eaten, such as the formation of an indigestible armature. In that case, predators face a trade-off between avoiding toxins and minimizing indigestible ballast intake. Here, we report on the trophic interactions between a shorebird (red knot, Calidris canutus canutus) and its two main bivalve prey, one being mildly toxic but easily digestible, and the other being non-toxic but harder to digest. A novel toxin-based optimal diet model is developed and tested against an existing one that ignores toxin constraints on the basis of data on prey abundance, diet choice, local survival and numbers of red knots at Banc d'Arguin (Mauritania) over 8 years. Observed diet and annual survival rates closely fit the predictions of the toxin-based model, with survival and population size being highest in years when the non-toxic prey is abundant. In the 6 of 8 years when the non-toxic prey is not abundant enough to satisfy the energy requirements, red knots must rely on the toxic alternative.

Investigating Targets of Avian Habitat Management to Eliminate an Ecological Trap

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Bruce A. Robertson

2012-12-01

trees. Both sexes preferred standing dead perch trees (snags and these preferences were most obvious in harvested forest where snags are rarer. Because previous research shows that snag density is linked to habitat preference and spruce/fir trees are preferred nest substrate, my results suggest these two habitat components are focal habitat selection cues. I suggest alternative and complementary strategies for eliminating the ecological trap for Olive-sided Flycatchers including: (1 reduced retention and creation of snags, (2 avoiding selective harvest in spruce, fir, and larch stands, (3 avoiding retention of these tree species, and (4 selecting only even-aged canopy height trees for retention so as to reduce perch availability for female flycatchers. Because these strategies also have potential to negatively impact habitat suitability for other forest species or even create new ecological traps, we urge caution in the application of our management recommendations.

Movement is the glue connecting home ranges and habitat selection.

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Van Moorter, Bram; Rolandsen, Christer M; Basille, Mathieu; Gaillard, Jean-Michel

2016-01-01

Animal space use has been studied by focusing either on geographic (e.g. home ranges, species' distribution) or on environmental (e.g. habitat use and selection) space. However, all patterns of space use emerge from individual movements, which are the primary means by which animals change their environment. Individuals increase their use of a given area by adjusting two key movement components: the duration of their visit and/or the frequency of revisits. Thus, in spatially heterogeneous environments, animals exploit known, high-quality resource areas by increasing their residence time (RT) in and/or decreasing their time to return (TtoR) to these areas. We expected that spatial variation in these two movement properties should lead to observed patterns of space use in both geographic and environmental spaces. We derived a set of nine predictions linking spatial distribution of movement properties to emerging space-use patterns. We predicted that, at a given scale, high variation in RT and TtoR among habitats leads to strong habitat selection and that long RT and short TtoR result in a small home range size. We tested these predictions using moose (Alces alces) GPS tracking data. We first modelled the relationship between landscape characteristics and movement properties. Then, we investigated how the spatial distribution of predicted movement properties (i.e. spatial autocorrelation, mean, and variance of RT and TtoR) influences home range size and hierarchical habitat selection. In landscapes with high spatial autocorrelation of RT and TtoR, a high variation in both RT and TtoR occurred in home ranges. As expected, home range location was highly selective in such landscapes (i.e. second-order habitat selection); RT was higher and TtoR lower within the selected home range than outside, and moose home ranges were small. Within home ranges, a higher variation in both RT and TtoR was associated with higher selectivity among habitat types (i.e. third-order habitat

Shorebird Migration Patterns in Response to Climate Change: A Modeling Approach

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Smith, James A.

2010-01-01

The availability of satellite remote sensing observations at multiple spatial and temporal scales, coupled with advances in climate modeling and information technologies offer new opportunities for the application of mechanistic models to predict how continental scale bird migration patterns may change in response to environmental change. In earlier studies, we explored the phenotypic plasticity of a migratory population of Pectoral sandpipers by simulating the movement patterns of an ensemble of 10,000 individual birds in response to changes in stopover locations as an indicator of the impacts of wetland loss and inter-annual variability on the fitness of migratory shorebirds. We used an individual based, biophysical migration model, driven by remotely sensed land surface data, climate data, and biological field data. Mean stop-over durations and stop-over frequency with latitude predicted from our model for nominal cases were consistent with results reported in the literature and available field data. In this study, we take advantage of new computing capabilities enabled by recent GP-GPU computing paradigms and commodity hardware (general purchase computing on graphics processing units). Several aspects of our individual based (agent modeling) approach lend themselves well to GP-GPU computing. We have been able to allocate compute-intensive tasks to the graphics processing units, and now simulate ensembles of 400,000 birds at varying spatial resolutions along the central North American flyway. We are incorporating additional, species specific, mechanistic processes to better reflect the processes underlying bird phenotypic plasticity responses to different climate change scenarios in the central U.S.

VisTrails SAHM: visualization and workflow management for species habitat modeling

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Morisette, Jeffrey T.; Jarnevich, Catherine S.; Holcombe, Tracy R.; Talbert, Colin B.; Ignizio, Drew A.; Talbert, Marian; Silva, Claudio; Koop, David; Swanson, Alan; Young, Nicholas E.

2013-01-01

The Software for Assisted Habitat Modeling (SAHM) has been created to both expedite habitat modeling and help maintain a record of the various input data, pre- and post-processing steps and modeling options incorporated in the construction of a species distribution model through the established workflow management and visualization VisTrails software. This paper provides an overview of the VisTrails:SAHM software including a link to the open source code, a table detailing the current SAHM modules, and a simple example modeling an invasive weed species in Rocky Mountain National Park, USA.

Stratification of habitats for identifying habitat selection by Merriam's turkeys

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Mark A. Rumble; Stanley H. Anderson

1992-01-01

Habitat selection patterns of Merriam’s Turkeys were compared in hierarchical analyses of three levels of habitat stratification. Habitat descriptions in first-level analyses were based on dominant species of vegetation. Habitat descriptions in second-level analyses were based on dominant species of vegetation and overstory canopy cover. Habitat descriptions in third-...

Assessing range-wide habitat suitability for the Lesser Prairie-Chicken

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Jarnevich, Catherine S.; Holcombe, Tracy R.; Grisham, Blake A.; Timmer, Jennifer M.; Boal, Clint W.; Butler, Matthew; Pitman, James C.; Kyle, Sean; Klute, David; Beauprez, Grant M.; Janus, Allan; Van Pelt, William E.

2016-01-01

Population declines of many wildlife species have been linked to habitat loss incurred through land-use change. Incorporation of conservation planning into development planning may mitigate these impacts. The threatened Lesser Prairie-Chicken (Tympanuchus pallidicinctus) is experiencing loss of native habitat and high levels of energy development across its multijurisdictional range. Our goal was to explore relationships of the species occurrence with landscape characteristics and anthropogenic effects influencing its distribution through evaluation of habitat suitability associated with one particular habitat usage, lekking. Lekking has been relatively well-surveyed, though not consistently, in all jurisdictions. All five states in which Lesser Prairie-Chickens occur cooperated in development of a Maxent habitat suitability model. We created two models, one with state as a factor and one without state. When state was included it was the most important predictor, followed by percent of land cover consisting of known or suspected used vegetation classes within a 5000 m area around a lek. Without state, land cover was the most important predictor of relative habitat suitability for leks. Among the anthropogenic predictors, landscape condition, a measure of human impact integrated across several factors, was most important, ranking third in importance without state. These results quantify the relative suitability of the landscape within the current occupied range of Lesser Prairie-Chickens. These models, combined with other landscape information, form the basis of a habitat assessment tool that can be used to guide siting of development projects and targeting of areas for conservation.

Prioritizing tiger conservation through landscape genetics and habitat linkages.

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Yumnam, Bibek; Jhala, Yadvendradev V; Qureshi, Qamar; Maldonado, Jesus E; Gopal, Rajesh; Saini, Swati; Srinivas, Y; Fleischer, Robert C

2014-01-01

Even with global support for tiger (Panthera tigris) conservation their survival is threatened by poaching, habitat loss and isolation. Currently about 3,000 wild tigers persist in small fragmented populations within seven percent of their historic range. Identifying and securing habitat linkages that connect source populations for maintaining landscape-level gene flow is an important long-term conservation strategy for endangered carnivores. However, habitat corridors that link regional tiger populations are often lost to development projects due to lack of objective evidence on their importance. Here, we use individual based genetic analysis in combination with landscape permeability models to identify and prioritize movement corridors across seven tiger populations within the Central Indian Landscape. By using a panel of 11 microsatellites we identified 169 individual tigers from 587 scat and 17 tissue samples. We detected four genetic clusters within Central India with limited gene flow among three of them. Bayesian and likelihood analyses identified 17 tigers as having recent immigrant ancestry. Spatially explicit tiger occupancy obtained from extensive landscape-scale surveys across 76,913 km(2) of forest habitat was found to be only 21,290 km(2). After accounting for detection bias, the covariates that best explained tiger occupancy were large, remote, dense forest patches; large ungulate abundance, and low human footprint. We used tiger occupancy probability to parameterize habitat permeability for modeling habitat linkages using least-cost and circuit theory pathway analyses. Pairwise genetic differences (FST) between populations were better explained by modeled linkage costs (r>0.5, p<0.05) compared to Euclidean distances, which was in consonance with observed habitat fragmentation. The results of our study highlight that many corridors may still be functional as there is evidence of contemporary migration. Conservation efforts should provide legal status

Prioritizing tiger conservation through landscape genetics and habitat linkages.

Directory of Open Access Journals (Sweden)

Bibek Yumnam

Full Text Available Even with global support for tiger (Panthera tigris conservation their survival is threatened by poaching, habitat loss and isolation. Currently about 3,000 wild tigers persist in small fragmented populations within seven percent of their historic range. Identifying and securing habitat linkages that connect source populations for maintaining landscape-level gene flow is an important long-term conservation strategy for endangered carnivores. However, habitat corridors that link regional tiger populations are often lost to development projects due to lack of objective evidence on their importance. Here, we use individual based genetic analysis in combination with landscape permeability models to identify and prioritize movement corridors across seven tiger populations within the Central Indian Landscape. By using a panel of 11 microsatellites we identified 169 individual tigers from 587 scat and 17 tissue samples. We detected four genetic clusters within Central India with limited gene flow among three of them. Bayesian and likelihood analyses identified 17 tigers as having recent immigrant ancestry. Spatially explicit tiger occupancy obtained from extensive landscape-scale surveys across 76,913 km(2 of forest habitat was found to be only 21,290 km(2. After accounting for detection bias, the covariates that best explained tiger occupancy were large, remote, dense forest patches; large ungulate abundance, and low human footprint. We used tiger occupancy probability to parameterize habitat permeability for modeling habitat linkages using least-cost and circuit theory pathway analyses. Pairwise genetic differences (FST between populations were better explained by modeled linkage costs (r>0.5, p<0.05 compared to Euclidean distances, which was in consonance with observed habitat fragmentation. The results of our study highlight that many corridors may still be functional as there is evidence of contemporary migration. Conservation efforts should

Relationships between meiofaunal biodiversity and prokaryotic heterotrophic production in different tropical habitats and oceanic regions.

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Pusceddu, Antonio; Gambi, Cristina; Corinaldesi, Cinzia; Scopa, Mariaspina; Danovaro, Roberto

2014-01-01

Tropical marine ecosystems are among the most diverse of the world oceans, so that assessing the linkages between biodiversity and ecosystem functions (BEF) is a crucial step to predict consequences of biodiversity loss. Most BEF studies in marine ecosystems have been carried out on macrobenthic diversity, whereas the influence of the meiofauna on ecosystem functioning has received much less attention. We compared meiofaunal and nematode biodiversity and prokaryotic heterotrophic production across seagrass, mangrove and reef sediments in the Caribbean, Celebes and Red Seas. For all variables we report the presence of differences among habitats within the same region, and among regions within the same habitat. In all regions, the richness of meiofaunal taxa in reef and seagrass sediments is higher than in mangrove sediments. The sediments of the Celebes Sea show the highest meiofaunal biodiversity. The composition of meiofaunal assemblages varies significantly among habitats in the same region. The nematode beta diversity among habitats within the same region is higher than the beta diversity among regions. Although one site per habitat was considered in each region, these results suggest that the composition of meiofaunal assemblages varies primarily among biogeographic regions, whereas the composition of nematode assemblages varies more considerably among habitats. Meiofauna and nematode biodiversity and prokaryotic heterotrophic production, even after the removal of covariate effects linked with longitude and the quantity and nutritional quality of organic matter, are positively and linearly linked both across regions and within each habitat type. Our results confirm that meiofauna and nematode biodiversity may influence benthic prokaryotic activity, which, in turn, implies that diversity loss could have negative impacts on ecosystem functioning in these systems.

Relationships between meiofaunal biodiversity and prokaryotic heterotrophic production in different tropical habitats and oceanic regions.

Directory of Open Access Journals (Sweden)

Antonio Pusceddu

Full Text Available Tropical marine ecosystems are among the most diverse of the world oceans, so that assessing the linkages between biodiversity and ecosystem functions (BEF is a crucial step to predict consequences of biodiversity loss. Most BEF studies in marine ecosystems have been carried out on macrobenthic diversity, whereas the influence of the meiofauna on ecosystem functioning has received much less attention. We compared meiofaunal and nematode biodiversity and prokaryotic heterotrophic production across seagrass, mangrove and reef sediments in the Caribbean, Celebes and Red Seas. For all variables we report the presence of differences among habitats within the same region, and among regions within the same habitat. In all regions, the richness of meiofaunal taxa in reef and seagrass sediments is higher than in mangrove sediments. The sediments of the Celebes Sea show the highest meiofaunal biodiversity. The composition of meiofaunal assemblages varies significantly among habitats in the same region. The nematode beta diversity among habitats within the same region is higher than the beta diversity among regions. Although one site per habitat was considered in each region, these results suggest that the composition of meiofaunal assemblages varies primarily among biogeographic regions, whereas the composition of nematode assemblages varies more considerably among habitats. Meiofauna and nematode biodiversity and prokaryotic heterotrophic production, even after the removal of covariate effects linked with longitude and the quantity and nutritional quality of organic matter, are positively and linearly linked both across regions and within each habitat type. Our results confirm that meiofauna and nematode biodiversity may influence benthic prokaryotic activity, which, in turn, implies that diversity loss could have negative impacts on ecosystem functioning in these systems.

Urban habitat complexity affects species richness but not environmental filtering of morphologically-diverse ants

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Alessandro Ossola

2015-10-01

Full Text Available Habitat complexity is a major determinant of structure and diversity of ant assemblages. Following the size-grain hypothesis, smaller ant species are likely to be advantaged in more complex habitats compared to larger species. Habitat complexity can act as an environmental filter based on species size and morphological traits, therefore affecting the overall structure and diversity of ant assemblages. In natural and semi-natural ecosystems, habitat complexity is principally regulated by ecological successions or disturbance such as fire and grazing. Urban ecosystems provide an opportunity to test relationships between habitat, ant assemblage structure and ant traits using novel combinations of habitat complexity generated and sustained by human management. We sampled ant assemblages in low-complexity and high-complexity parks, and high-complexity woodland remnants, hypothesizing that (i ant abundance and species richness would be higher in high-complexity urban habitats, (ii ant assemblages would differ between low- and high-complexity habitats and (iii ants living in high-complexity habitats would be smaller than those living in low-complexity habitats. Contrary to our hypothesis, ant species richness was higher in low-complexity habitats compared to high-complexity habitats. Overall, ant assemblages were significantly different among the habitat complexity types investigated, although ant size and morphology remained the same. Habitat complexity appears to affect the structure of ant assemblages in urban ecosystems as previously observed in natural and semi-natural ecosystems. However, the habitat complexity filter does not seem to be linked to ant morphological traits related to body size.

Urban habitat complexity affects species richness but not environmental filtering of morphologically-diverse ants

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Nash, Michael A.; Christie, Fiona J.; Hahs, Amy K.; Livesley, Stephen J.

2015-01-01

Habitat complexity is a major determinant of structure and diversity of ant assemblages. Following the size-grain hypothesis, smaller ant species are likely to be advantaged in more complex habitats compared to larger species. Habitat complexity can act as an environmental filter based on species size and morphological traits, therefore affecting the overall structure and diversity of ant assemblages. In natural and semi-natural ecosystems, habitat complexity is principally regulated by ecological successions or disturbance such as fire and grazing. Urban ecosystems provide an opportunity to test relationships between habitat, ant assemblage structure and ant traits using novel combinations of habitat complexity generated and sustained by human management. We sampled ant assemblages in low-complexity and high-complexity parks, and high-complexity woodland remnants, hypothesizing that (i) ant abundance and species richness would be higher in high-complexity urban habitats, (ii) ant assemblages would differ between low- and high-complexity habitats and (iii) ants living in high-complexity habitats would be smaller than those living in low-complexity habitats. Contrary to our hypothesis, ant species richness was higher in low-complexity habitats compared to high-complexity habitats. Overall, ant assemblages were significantly different among the habitat complexity types investigated, although ant size and morphology remained the same. Habitat complexity appears to affect the structure of ant assemblages in urban ecosystems as previously observed in natural and semi-natural ecosystems. However, the habitat complexity filter does not seem to be linked to ant morphological traits related to body size. PMID:26528416

Enemy-free space and habitat-specific host specialization in a butterfly.

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Wiklund, Christer; Friberg, Magne

2008-08-01

The majority of herbivorous insects have relatively specialized food habits. This suggests that specialization has some advantage(s) over generalization. Traditionally, feeding specialization has been thought to be linked to digestive or other food-related physiological advantages, but recent theory suggests that generalist natural enemies of herbivorous insects can also provide a major selective pressure for restricted host plant range. The European swallowtail butterfly Papilio machaon utilizes various plants in the Apiaceae family as hosts, but is an ecological specialist being monophagous on Angelica archangelica in southern Sweden. This perennial monocarp grows in three seaside habitat types: (1) on the barren rocky shore in the absence of any surrounding vegetation, (2) on the rocky shore with some surrounding vegetation, and (3) on species-rich meadows. The rocky shore habitat harbors few invertebrate generalist predators, whereas a number of invertebrate predators abound in the meadowland habitat. Here, we test the importance of enemy-free space for feeding specialization in Papilio machaon by assessing survival of larvae placed by hand on A. archangelica in each of the three habitat types, and by assessing the habitat-specificity of adult female egg-laying behavior by recording the distribution of eggs laid by free-flying adult females among the three habitat types. Larval survival was substantially higher in the rocky shore habitat than in the meadowland and significantly higher on host plants without surrounding vegetation on the rocky shore. Eggs laid by free-flying females were found in all three habitat types, but were significantly more frequent in the rocky shore habitat, suggesting that females prefer to lay eggs in the habitat type where offspring survival is highest. These results show that larval survivorship on the same host plant species can be strongly habitat-specific, and suggest that enemy-free space is an underlying factor that drives

Habitat Use Database - Groundfish Essential Fish Habitat (EFH) Habitat Use Database (HUD)

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National Oceanic and Atmospheric Administration, Department of Commerce — The Habitat Use Database (HUD) was specifically designed to address the need for habitat-use analyses in support of groundfish EFH, HAPCs, and fishing and nonfishing...

Avian communities in tidal salt marshes of San Francisco Bay: a review of functional groups by foraging guild and habitat association

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Takekawa, John Y.; Woo, Isa; Gardiner, Rachel J.; Casazza, Michael L.; Ackerman, Joshua T.; Nur, Nadav; Liu, Leonard; Spautz, Hildie; Palaima, Arnas

2011-01-01

The San Francisco Bay estuary is highly urbanized, but it supports the largest remaining extent of tidal salt marshes on the west coast of North America as well as a diverse native bird community. San Francisco Bay tidal marshes are occupied by more than 113 bird species that represent 31 families, including five subspecies from three families that we denote as tidal-marsh obligates. To better identify the niche of bird species in tidal marshes, we present a review of functional groups based on foraging guilds and habitat associations. Foraging guilds describe the method by which species obtain food from tidal marshes, while habitat associations describe broad areas within the marsh that have similar environmental conditions. For example, the ubiquitous song sparrows (Alameda Melospiza melodia pusillula, Suisun M. m. maxillaris, and San Pablo M. m. samuelis) are surface-feeding generalists that consume prey from vegetation and the ground, and they are found across the entire marsh plain into the upland–marsh transition. In contrast, surface-feeding California black rails (Laterallus jamaicensis coturniculus) are cryptic, and generally restricted in their distribution to the mid- and high-marsh plain. Although in the same family, the endangered California clapper rail (Rallus longirostris obsoletus) has become highly specialized, foraging primarily on benthic fauna within marsh channels when they are exposed at low tide. Shorebirds such as the black-necked stilt (Himantopus mexicanus) typically probe in mud flats to consume macroinvertebrate prey, and are generally restricted to foraging on salt pans within the marsh plain, in ponds, or on mud flats during transitional stages of marsh evolution. The abundance and distribution of birds varies widely with changing water depths and vegetation colonization during different stages of restoration. Thus, tidal-marsh birds represent a rich and diverse community in bay marshes, with niches that may be distinguished by the

Trait plasticity, not values, best corresponds with woodland plant success in novel and manipulated habitats

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Robert J. Warren; Jeffrey K. Lake

2012-01-01

Aims: The clustering of plants with similar leaf traits along environmental gradients may arise from adaptation as well as acclimation to heterogeneous habitat conditions. Determining the forces that shape plant leaf traits requires both linking variation in trait morphology with abiotic gradients and linking that trait variation with plant performance under varying...

A resource-based modelling framework to assess habitat suitability for steppe birds in semiarid Mediterranean agricultural systems.

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Laura Cardador

Full Text Available European agriculture is undergoing widespread changes that are likely to have profound impacts on farmland biodiversity. The development of tools that allow an assessment of the potential biodiversity effects of different land-use alternatives before changes occur is fundamental to guiding management decisions. In this study, we develop a resource-based model framework to estimate habitat suitability for target species, according to simple information on species' key resource requirements (diet, foraging habitat and nesting site, and examine whether it can be used to link land-use and local species' distribution. We take as a study case four steppe bird species in a lowland area of the north-eastern Iberian Peninsula. We also compare the performance of our resource-based approach to that obtained through habitat-based models relating species' occurrence and land-cover variables. Further, we use our resource-based approach to predict the effects that change in farming systems can have on farmland bird habitat suitability and compare these predictions with those obtained using the habitat-based models. Habitat suitability estimates generated by our resource-based models performed similarly (and better for one study species than habitat based-models when predicting current species distribution. Moderate prediction success was achieved for three out of four species considered by resource-based models and for two of four by habitat-based models. Although, there is potential for improving the performance of resource-based models, they provide a structure for using available knowledge of the functional links between agricultural practices, provision of key resources and the response of organisms to predict potential effects of changing land-uses in a variety of context or the impacts of changes such as altered management practices that are not easily incorporated into habitat-based models.

Idaho Habitat Evaluation for Off-Site Mitigation Record : Annual Report 1987.

Energy Technology Data Exchange (ETDEWEB)

Petrosky, Charles E.; Holubetz, Terry B. (Idaho Dept. of Fish and Game, Boise, ID (USA)

1988-04-01

The Idaho Department of Fish and Game has been monitoring and evaluating existing and proposed habitat improvement projects for steelhead (Salmo gairdneri) and chinook salmon (Oncorhynchus tshawytscha) in the Clearwater and Salmon River drainages over the last four years. Projects included in the evaluation are funded by, or proposed for funding by, the Bonneville Power Administration (BPA) under the Northwest Power Planning Act as off-site mitigation for downstream hydropower development on the Snake and Columbia rivers. A mitigation record is being developed to use increased smolt production at full seeding as the best measure of benefit from a habitat enhancement project. Determination of full benefit from a project depends on presence of adequate numbers of fish to document actual increases in fish production. The depressed nature of upriver anadromous stocks have precluded attainment of full benefit of any habitat project in Idaho. Partial benefit will be credited to the mitigation record in the interim period of run restoration. According to the BPA Work Plan, project implementors have the primary responsibility for measuring physical habitat and estimating habitat change. To date, Idaho habitat projects have been implemented primarily by the US Forest Service (USFS). The Shoshone-Bannock Tribes (SBT) have sponsored three projects (Bear Valley Mine, Yankee Fork, and the proposed East Fork Salmon River projects). IDFG implemented two barrier-removal projects (Johnson Creek and Boulder Creek) that the USFS was unable to sponsor at that time. The role of IDFG in physical habitat monitoring is primarily to link habitat quality and habitat change to changes in actual, or potential, fish production. Individual papers were processed separately for the data base.

Surface Habitat Systems

Science.gov (United States)

Kennedy, Kriss J.

2009-01-01

The Surface Habitat Systems (SHS) Focused Investment Group (FIG) is part of the National Aeronautics and Space Administration (NASA) Johnson Space Center (JSC) effort to provide a focused direction and funding to the various projects that are working on human surface habitat designs and technologies for the planetary exploration missions. The overall SHS-FIG effort focuses on directing and guiding those projects that: 1) develop and demonstrate new surface habitat system concepts, innovations, and technologies to support human exploration missions, 2) improve environmental systems that interact with human habitats, 3) handle and emplace human surface habitats, and 4) focus on supporting humans living and working in habitats on planetary surfaces. The activity areas of the SHS FIG described herein are focused on the surface habitat project near-term objectives as described in this document. The SHS-FIG effort focuses on mitigating surface habitat risks (as identified by the Lunar Surface Systems Project Office (LSSPO) Surface Habitat Element Team; and concentrates on developing surface habitat technologies as identified in the FY08 gap analysis. The surface habitat gap assessment will be updated annually as the surface architecture and surface habitat definition continues to mature. These technologies are mapped to the SHS-FIG Strategic Development Roadmap. The Roadmap will bring to light the areas where additional innovative efforts are needed to support the development of habitat concepts and designs and the development of new technologies to support of the LSSPO Habitation Element development plan. Three specific areas of development that address Lunar Architecture Team (LAT)-2 and Constellation Architecture Team (CxAT) Lunar habitat design issues or risks will be focused on by the SHS-FIG. The SHS-FIG will establish four areas of development that will help the projects prepare in their planning for surface habitat systems development. Those development areas are

Riverine habitat dynamics

Science.gov (United States)

Jacobson, R.B.

2013-01-01

The physical habitat template is a fundamental influence on riverine ecosystem structure and function. Habitat dynamics refers to the variation in habitat through space and time as the result of varying discharge and varying geomorphology. Habitat dynamics can be assessed at spatial scales ranging from the grain (the smallest resolution at which an organism relates to its environment) to the extent (the broadest resolution inclusive of all space occupied during its life cycle). In addition to a potentially broad range of spatial scales, assessments of habitat dynamics may include dynamics of both occupied and nonoccupied habitat patches because of process interactions among patches. Temporal aspects of riverine habitat dynamics can be categorized into hydrodynamics and morphodynamics. Hydrodynamics refers to habitat variation that results from changes in discharge in the absence of significant change of channel morphology and at generally low sediment-transport rates. Hydrodynamic assessments are useful in cases of relatively high flow exceedance (percent of time a flow is equaled or exceeded) or high critical shear stress, conditions that are applicable in many studies of instream flows. Morphodynamics refers to habitat variation resulting from changes to substrate conditions or channel/floodplain morphology. Morphodynamic assessments are necessary when channel and floodplain boundary conditions have been significantly changed, generally by relatively rare flood events or in rivers with low critical shear stress. Morphodynamic habitat variation can be particularly important as disturbance mechanisms that mediate population growth or for providing conditions needed for reproduction, such as channel-migration events that erode cutbanks and provide new pointbar surfaces for germination of riparian trees. Understanding of habitat dynamics is increasing in importance as societal goals shift toward restoration of riverine ecosystems. Effective investment in restoration

Alaska Steller Sea Lion Habitat Model Satellite Telemetry and Environmental Data, 2000-2012

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The at-sea habitat use of Steller sea lions was modeled from location and dive behavior data obtained from the deployment of satellite-linked telemetry tags on sea...

Mapping wetlands and surface water in the Prairie Pothole Region of North America: Chapter 16

Science.gov (United States)

Rover, Jennifer R.; Mushet, David M.

2015-01-01

The Prairie Pothole Region (PPR) is one of the most highly productive wetland regions in the world. Prairie Pothole wetlands serve as a primary feeding and breeding habitat for more than one-half of North America’s waterfowl population, as well as a variety of songbirds, waterbirds, shorebirds, and other wildlife. During the last century, extensive land conversions from grassland with wetlands to cultivated cropland and grazed pastureland segmented and reduced wetland habitat. Inventorying and characterizing remaining wetland habitat is critical for the management of wetland ecosystem services. Remote sensing technologies are often utilized for mapping and monitoring wetlands. This chapter presents background specific to the PPR and discusses approaches employed in mapping its wetlands before presenting a case study.

Linking animals aloft with the terrestrial landscape

Science.gov (United States)

Buler, Jeffrey J.; Barrow, Wylie; Boone, Matthew; Dawson, Deanna K.; Diehl, Robert H.; Moore, Frank R.; Randall, Lori A.; Schreckengost, Timothy; Smolinsky, Jaclyn A.

2018-01-01

Despite using the aerosphere for many facets of their life, most flying animals (i.e., birds, bats, some insects) are still bound to terrestrial habitats for resting, feeding, and reproduction. Comprehensive broad-scale observations by weather surveillance radars of animals as they leave terrestrial habitats for migration or feeding flights can be used to map their terrestrial distributions either as point locations (e.g., communal roosts) or as continuous surface layers (e.g., animal densities in habitats across a landscape). We discuss some of the technical challenges to reducing measurement biases related to how radars sample the aerosphere and the flight behavior of animals. We highlight a recently developed methodological approach that precisely and quantitatively links the horizontal spatial structure of birds aloft to their terrestrial distributions and provides novel insights into avian ecology and conservation across broad landscapes. Specifically, we present case studies that (1) elucidate how migrating birds contend with crossing ecological barriers and extreme weather events, (2) identify important stopover areas and habitat use patterns of birds along their migration routes, and (3) assess waterfowl response to wetland habitat management and restoration. These studies aid our understanding of how anthropogenic modification of the terrestrial landscape (e.g., urbanization, habitat management), natural geographic features, and weather (e.g., hurricanes) can affect the terrestrial distributions of flying animals.

Habitat-related specialization of lateral-line system morphology in a habitat-generalist and a habitat-specialist New Zealand eleotrid.

Science.gov (United States)

Vanderpham, J P; Nakagawa, S; Senior, A M; Closs, G P

2016-04-01

An investigation of intraspecific habitat-related patterns of variation in oculoscapular lateral-line superficial neuromasts (SN) identified a decrease in the ratio of total SNs to pores, and a trend towards decreased asymmetry in SNs in the habitat-generalist common bully Gobiomorphus cotidianus from fluvial habitats compared to lacustrine habitats, suggesting habitat-related phenotypic variability. A greater ratio of pores to SNs, as well as less variation in the total number and asymmetry of SNs observed in the fluvial habitat-specialist redfin bully Gobiomorphus huttoni may provide further evidence of variations in the oculoscapular lateral-line morphology of fluvial habitat G. cotidianus individuals serving as adaptations to more turbulent environments. © 2016 The Fisheries Society of the British Isles.

Predation and habitat modification synergistically interact to control bivalve recruitment on intertidal mudflats

NARCIS (Netherlands)

van der Heide, T.; Tielens, E.; van der Zee, E.M.; Weerman, E.J.; Holthuijsen, S.; Eriksson, B.K.; Piersma, T.; van de Koppel, J.; Olff, H.

2014-01-01

Bivalves are key components of coastal ecosystems because they link pelagic and benthic food webs, and shape the landscape through habitat modification. Nevertheless, many bivalve stocks have dramatically declined, and recruitment failure due to (anthropogenically-) increased predation by

Predation and habitat modification synergistically interact to control bivalve recruitment on intertidal mudflats

NARCIS (Netherlands)

van der Heide, Tjisse; Tielens, Elske; van der Zee, Els; Weerman, Ellen J.; Holthuijsen, Sander; Eriksson, Britas Klemens; Piersma, Theun; van de Koppel, Johan; Olff, Han

Bivalves are key components of coastal ecosystems because they link pelagic and benthic food webs, and shape the landscape through habitat modification. Nevertheless, many bivalve stocks have dramatically declined, and recruitment failure due to (anthropogenically-) increased predation by

Chinook salmon use of spawning patches: relative roles of habitat quality, size, and connectivity.

Science.gov (United States)

Isaak, Daniel J; Thurow, Russell F; Rieman, Bruce E; Dunham, Jason B

2007-03-01

Declines in many native fish populations have led to reassessments of management goals and shifted priorities from consumptive uses to species preservation. As management has shifted, relevant environmental characteristics have evolved from traditional metrics that described local habitat quality to characterizations of habitat size and connectivity. Despite the implications this shift has for how habitats may be prioritized for conservation, it has been rare to assess the relative importance of these habitat components. We used an information-theoretic approach to select the best models from sets of logistic regressions that linked habitat quality, size, and connectivity to the occurrence of chinook salmon (Oncorhynchus tshawytscha) nests. Spawning distributions were censused annually from 1995 to 2004, and data were complemented with field measurements that described habitat quality in 43 suitable spawning patches across a stream network that drained 1150 km2 in central Idaho. Results indicated that the most plausible models were dominated by measures of habitat size and connectivity, whereas habitat quality was of minor importance. Connectivity was the strongest predictor of nest occurrence, but connectivity interacted with habitat size, which became relatively more important when populations were reduced. Comparison of observed nest distributions to null model predictions confirmed that the habitat size association was driven by a biological mechanism when populations were small, but this association may have been an area-related sampling artifact at higher abundances. The implications for habitat management are that the size and connectivity of existing habitat networks should be maintained whenever possible. In situations where habitat restoration is occurring, expansion of existing areas or creation of new habitats in key areas that increase connectivity may be beneficial. Information about habitat size and connectivity also could be used to strategically

A survey of the wetlands and floodplains of the borrow area and wetland/shorebird complex for the remedial action at the chemical plant area of the Weldon Spring Site

Energy Technology Data Exchange (ETDEWEB)

Van Lonkhuyzen, R.; Yin, S.; Hlohowskyj, I.

1995-02-01

The US Department of Energy is conducting cleanup operations at the Weldon Spring site, St. Charles, Missouri, that will include development of a 77-ha (191-acre) soil borrow area. Eight wetlands, including riverine and palustrine emergent wetland types and totaling 0.9 ha (2.2 acres), will be eliminated during excavation of the borrow area. A 23-ha (57-acre) wetland/shorebird complex will be created at the Busch Conservation Area. The complex will include 2 ha (5 acres) of palustrine emergent wetland as mitigation for wetland losses in the borrow area.

Do interactions of land use and climate affect productivity of waterbirds and prairie-pothole wetlands?

Science.gov (United States)

Anteau, Michael J.

2012-01-01

Availability of aquatic invertebrates on migration and breeding areas influences recruitment of ducks and shorebirds. In wetlands of Prairie Pothole Region (PPR), aquatic invertebrate production primarily is driven by interannual fluctuations of water levels in response to wet-dry cycles in climate. However, this understanding comes from studying basins that are minimally impacted by agricultural landscape modifications. In the past 100–150 years, a large proportion of wetlands within the PPR have been altered; often water was drained from smaller to larger wetlands at lower elevations creating consolidated, interconnected basins. Here I present a case study and I hypothesize that large basins receiving inflow from consolidation drainage have reduced water-level fluctuations in response to climate cycles than those in undrained landscapes, resulting in relatively stable wetlands that have lower densities of invertebrate forage for ducks and shorebirds and also less foraging habitat, especially for shorebirds. Furthermore, stable water-levels and interconnected basins may favor introduced or invasive species (e.g., cattail [Typha spp.] or fish) because native communities "evolved" in a dynamic and isolated system. Accordingly, understanding interactions between water-level fluctuations and landscape modifications is a prerequisite step to modeling effects of climate change on wetland hydrology and productivity and concomitant recruitment of waterbirds.

An approach of habitat degradation assessment for characterization on coastal habitat conservation tendency.

Science.gov (United States)

Zhou, Xi-Yin; Lei, Kun; Meng, Wei

2017-09-01

Coastal zones are population and economy highly intensity regions all over the world, and coastal habitat supports the sustainable development of human society. The accurate assessment of coastal habitat degradation is the essential prerequisite for coastal zone protection. In this study, an integrated framework of coastal habitat degradation assessment including landuse classification, habitat classifying and zoning, evaluation criterion of coastal habitat degradation and coastal habitat degradation index has been established for better regional coastal habitat assessment. Through establishment of detailed three-class landuse classification, the fine landscape change is revealed, the evaluation criterion of coastal habitat degradation through internal comparison based on the results of habitat classifying and zoning could indicate the levels of habitat degradation and distinguish the intensity of human disturbances in different habitat subareas under the same habitat classification. Finally, the results of coastal habitat degradation assessment could be achieved through coastal habitat degradation index (CHI). A case study of the framework is carried out in the Circum-Bohai-Sea-Coast, China, and the main results show the following: (1) The accuracy of all land use classes are above 90%, which indicates a satisfactory accuracy for the classification map. (2) The Circum-Bohai-Sea-Coast is divided into 3 kinds of habitats and 5 subareas. (3) In the five subareas of the Circum-Bohai-Sea-Coast, the levels of coastal habitat degradation own significant difference. The whole Circum-Bohai-Sea-Coast generally is in a worse state according to area weighting of each habitat subarea. This assessment framework of coastal habitat degradation would characterize the landuse change trend, realize better coastal habitat degradation assessment, reveal the habitat conservation tendency and distinguish intensity of human disturbances. Furthermore, it would support for accurate coastal

Avian responses to an extreme ice storm are determined by a combination of functional traits, behavioural adaptations and habitat modifications.

Science.gov (United States)

Zhang, Qiang; Hong, Yongmi; Zou, Fasheng; Zhang, Min; Lee, Tien Ming; Song, Xiangjin; Rao, Jiteng

2016-03-01

The extent to which species' traits, behavior and habitat synergistically determine their response to extreme weather events (EWE) remains poorly understood. By quantifying bird and vegetation assemblages before and after the 2008 ice storm in China, combined with interspecific interactions and foraging behaviours, we disentangled whether storm influences avian reassembly directly via functional traits (i.e. behavioral adaptations), or indirectly via habitat variations. We found that overall species richness decreased, with 20 species detected exclusively before the storm, and eight species detected exclusively after. These shifts in bird relative abundance were linked to habitat preferences, dietary guild and flocking behaviours. For instance, forest specialists at higher trophic levels (e.g. understory-insectivores, woodpeckers and kingfishers) were especially vulnerable, whereas open-habitat generalists (e.g. bulbuls) were set to benefit from potential habitat homogenization. Alongside population fluctuations, we found that community reassembly can be rapidly adjusted via foraging plasticity (i.e. increased flocking propensity and reduced perching height). And changes in preferred habitat corresponded to a variation in bird assemblages and traits, as represented by intact canopy cover and high density of large trees. Accurate predictions of community responses to EWE are crucial to understanding ecosystem disturbances, thus linking species-oriented traits to a coherent analytical framework.

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats.

Science.gov (United States)

Martino, Maria Elena; Bayjanov, Jumamurat R; Caffrey, Brian E; Wels, Michiel; Joncour, Pauline; Hughes, Sandrine; Gillet, Benjamin; Kleerebezem, Michiel; van Hijum, Sacha A F T; Leulier, François

2016-12-01

The ability of bacteria to adapt to diverse environmental conditions is well-known. The process of bacterial adaptation to a niche has been linked to large changes in the genome content, showing that many bacterial genomes reflect the constraints imposed by their habitat. However, some highly versatile bacteria are found in diverse habitats that almost share nothing in common. Lactobacillus plantarum is a lactic acid bacterium that is found in a large variety of habitat. With the aim of unravelling the link between evolution and ecological versatility of L. plantarum, we analysed the genomes of 54 L. plantarum strains isolated from different environments. Comparative genome analysis identified a high level of genomic diversity and plasticity among the strains analysed. Phylogenomic and functional divergence studies coupled with gene-trait matching analyses revealed a mixed distribution of the strains, which was uncoupled from their environmental origin. Our findings revealed the absence of specific genomic signatures marking adaptations of L. plantarum towards the diverse habitats it is associated with. This suggests fundamentally similar trends of genome evolution in L. plantarum, which occur in a manner that is apparently uncoupled from ecological constraint and reflects the nomadic lifestyle of this species. © 2016 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Presence and absence of bats across habitat scales in the Upper Coastal Plain of South Carolina.

Energy Technology Data Exchange (ETDEWEB)

Ford, W.Mark; Menzel, Jennifer M.; Menzel, Michael A.: Edwards, John W.; Kilgo, John C.

2006-10-01

Abstract During 2001, we used active acoustical sampling (Anabat II) to survey foraging habitat relationships of bats on the Savannah River Site (SRS) in the upper Coastal Plain of South Carolina. Using an a priori information-theoretic approach, we conducted logistic regression analysis to examine presence of individual bat species relative to a suite of microhabitat, stand, and landscape-level features such as forest structural metrics, forest type, proximity to riparian zones and Carolina bay wetlands, insect abundance, and weather. There was considerable empirical support to suggest that the majority of the activity of bats across most of the 6 species occurred at smaller, stand-level habitat scales that combine measures of habitat clutter (e.g., declining forest canopy cover and basal area), proximity to riparian zones, and insect abundance. Accordingly, we hypothesized that most foraging habitat relationships were more local than landscape across this relatively large area for generalist species of bats. The southeastern myotis (Myotis austroriparius) was the partial exception, as its presence was linked to proximity of Carolina bays (best approximating model) and bottomland hardwood communities (other models with empirical support). Efforts at SRS to promote open longleaf pine (Pinus palustris) and loblolly pine (P. taeda) savanna conditions and to actively restore degraded Carolina bay wetlands will be beneficial to bats. Accordingly, our results should provide managers better insight for crafting guidelines for bat habitat conservation that could be linked to widely accepted land management and environmental restoration practices for the region.

A Synopsis of Global Mapping of Freshwater Habitats and Biodiversity: Implications for Conservation

Energy Technology Data Exchange (ETDEWEB)

McManamay, Ryan A. [ORNL; Griffiths, Natalie A. [ORNL; DeRolph, Christopher R. [ORNL; Pracheil, Brenda M. [ORNL

2018-01-01

Accurately mapping freshwater habitats and biodiversity at high-resolutions across the globe is essential for assessing the vulnerability and threats to freshwater organisms and prioritizing conservation efforts. Since the 2000s, extensive efforts have been devoted to mapping global freshwater habitats (rivers, lakes, and wetlands), the spatial representation of which has changed dramatically over time with new geospatial data products and improved remote sensing technologies. Some of these mapping efforts, however, are still coarse representations of actual conditions. Likewise, the resolution and scope of global freshwater biodiversity compilation efforts have also increased, but are yet to mirror the spatial resolution and fidelity of mapped freshwater environments. In our synopsis, we find that efforts to map freshwater habitats have been conducted independently of those for freshwater biodiversity; subsequently, there is little congruence in the spatial representation and resolution of the two efforts. We suggest that global species distribution models are needed to fill this information gap; however, limiting data on habitat characteristics at scales that complement freshwater habitats has prohibited global high-resolution biogeography efforts. Emerging research trends, such as mapping habitat alteration in freshwater ecosystems and trait biogeography, show great promise in mechanistically linking global anthropogenic stressors to freshwater biodiversity decline and extinction risk.

Spatial, temporal, and density-dependent components of habitat quality for a desert owl.

Directory of Open Access Journals (Sweden)

Aaron D Flesch

Full Text Available Spatial variation in resources is a fundamental driver of habitat quality but the realized value of resources at any point in space may depend on the effects of conspecifics and stochastic factors, such as weather, which vary through time. We evaluated the relative and combined effects of habitat resources, weather, and conspecifics on habitat quality for ferruginous pygmy-owls (Glaucidium brasilianum in the Sonoran Desert of northwest Mexico by monitoring reproductive output and conspecific abundance over 10 years in and around 107 territory patches. Variation in reproductive output was much greater across space than time, and although habitat resources explained a much greater proportion of that variation (0.70 than weather (0.17 or conspecifics (0.13, evidence for interactions among each of these components of the environment was strong. Relative to habitat that was persistently low in quality, high-quality habitat buffered the negative effects of conspecifics and amplified the benefits of favorable weather, but did not buffer the disadvantages of harsh weather. Moreover, the positive effects of favorable weather at low conspecific densities were offset by intraspecific competition at high densities. Although realized habitat quality declined with increasing conspecific density suggesting interference mechanisms associated with an Ideal Free Distribution, broad spatial heterogeneity in habitat quality persisted. Factors linked to food resources had positive effects on reproductive output but only where nest cavities were sufficiently abundant to mitigate the negative effects of heterospecific enemies. Annual precipitation and brooding-season temperature had strong multiplicative effects on reproductive output, which declined at increasing rates as drought and temperature increased, reflecting conditions predicted to become more frequent with climate change. Because the collective environment influences habitat quality in complex ways

Dispersal capacity and diet breadth modify the response of wild bees to habitat loss.

Science.gov (United States)

Bommarco, Riccardo; Biesmeijer, Jacobus C; Meyer, Birgit; Potts, Simon G; Pöyry, Juha; Roberts, Stuart P M; Steffan-Dewenter, Ingolf; Ockinger, Erik

2010-07-07

Habitat loss poses a major threat to biodiversity, and species-specific extinction risks are inextricably linked to life-history characteristics. This relationship is still poorly documented for many functionally important taxa, and at larger continental scales. With data from five replicated field studies from three countries, we examined how species richness of wild bees varies with habitat patch size. We hypothesized that the form of this relationship is affected by body size, degree of host plant specialization and sociality. Across all species, we found a positive species-area slope (z = 0.19), and species traits modified this relationship. Large-bodied generalists had a lower z value than small generalists. Contrary to predictions, small specialists had similar or slightly lower z value compared with large specialists, and small generalists also tended to be more strongly affected by habitat loss as compared with small specialists. Social bees were negatively affected by habitat loss (z = 0.11) irrespective of body size. We conclude that habitat loss leads to clear shifts in the species composition of wild bee communities.

Systematic review of the influence of foraging habitat on red-cockaded woodpecker reproductive success.

Energy Technology Data Exchange (ETDEWEB)

Garabedian, James E. [North Carolina State University

2014-04-01

Relationships between foraging habitat and reproductive success provide compelling evidence of the contribution of specific vegetative features to foraging habitat quality, a potentially limiting factor for many animal populations. For example, foraging habitat quality likely will gain importance in the recovery of the threatened red-cockaded woodpecker Picoides borealis (RCW) in the USA as immediate nesting constraints are mitigated. Several researchers have characterized resource selection by foraging RCWs, but emerging research linking reproductive success (e.g. clutch size, nestling and fledgling production, and group size) and foraging habitat features has yet to be synthesized. Therefore, we reviewed peer-refereed scientific literature and technical resources (e.g. books, symposia proceedings, and technical reports) that examined RCW foraging ecology, foraging habitat, or demography to evaluate evidence for effects of the key foraging habitat features described in the species’ recovery plan on group reproductive success. Fitness-based habitat models suggest foraging habitat with low to intermediate pine Pinus spp. densities, presence of large and old pines, minimal midstory development, and herbaceous groundcover support more productive RCW groups. However, the relationships between some foraging habitat features and RCW reproductive success are not well supported by empirical data. In addition, few regression models account for > 30% of variation in reproductive success, and unstandardized multiple and simple linear regression coefficient estimates typically range from -0.100 to 0.100, suggesting ancillary variables and perhaps indirect mechanisms influence reproductive success. These findings suggest additional research is needed to address uncertainty in relationships between foraging habitat features and RCW reproductive success and in the mechanisms underlying those relationships.

Chinook salmon use of spawning patches: Relative roles of habitat quality, size, and connectivity

Science.gov (United States)

Isaak, D.J.; Thurow, R.F.; Rieman, B.E.; Dunham, J.B.

2007-01-01

Declines in many native fish populations have led to reassessments of management goals and shifted priorities from consumptive uses to species preservation. As management has shifted, relevant environmental characteristics have evolved from traditional metrics that described local habitat quality to characterizations of habitat size and connectivity. Despite the implications this shift has for how habitats may be prioritized for conservation, it has been rare to assess the relative importance of these habitat components. We used an information-theoretic approach to select the best models from sets of logistic regressions that linked habitat quality, size, and connectivity to the occurrence of chinook salmon (Oncorhynchus tshawytscha) nests. Spawning distributions were censused annually from 1995 to 2004, and data were complemented with field measurements that described habitat quality in 43 suitable spawning patches across a stream network that drained 1150 km 2 in central Idaho. Results indicated that the most plausible models were dominated by measures of habitat size and connectivity, whereas habitat quality was of minor importance. Connectivity was the strongest predictor of nest occurrence, but connectivity interacted with habitat size, which became relatively more important when populations were reduced. Comparison of observed nest distributions to null model predictions confirmed that the habitat size association was driven by a biological mechanism when populations were small, but this association may have been an area-related sampling artifact at higher abundances. The implications for habitat management are that the size and connectivity of existing habitat networks should be maintained whenever possible. In situations where habitat restoration is occurring, expansion of existing areas or creation of new habitats in key areas that increase connectivity may be beneficial. Information about habitat size and connectivity also could be used to strategically

The Habitat Connection.

Science.gov (United States)

Naturescope, 1987

1987-01-01

Consists of activities which address the causes of habitat destruction and the effects of habitat loss on animals and plants. Identifies habitat loss as the major reason for the endangerment and extinction of plant and animal species. (ML)

Hydrologic and water-quality rehabilitation of environments for suitable fish habitat

Science.gov (United States)

Zhao, C. S.; Yang, S. T.; Xiang, H.; Liu, C. M.; Zhang, H. T.; Yang, Z. L.; Zhang, Y.; Sun, Y.; Mitrovic, S. M.; Yu, Q.; Lim, R. P.

2015-11-01

Aquatic ecological rehabilitation is attracting increasing public and research attention, but without knowledge of the responses of aquatic species to their habitats the success of habitat restoration is uncertain. Thus efficient study of species response to habitat, through which to prioritize the habitat factors influencing aquatic ecosystems, is highly important. However many current models have too high requirement for assemblage information and have great bias in results due to consideration of only the species' attribute of presence/absence, abundance or biomass, thus hindering the wider utility of these models. This paper, using fish as a case, presents a framework for identification of high-priority habitat factors based on the responses of aquatic species to their habitats, using presence/absence, abundance and biomass data. This framework consists of four newly developed sub-models aiming to determine weightings for the evaluation of species' contributions to their communities, to quantitatively calculate an integrated habitat suitability index for multi-species based on habitat factors, to assess the suitable probability of habitat factors and to assess the rehabilitation priority of habitat factors. The framework closely links hydrologic, physical and chemical habitat factors to fish assemblage attributes drawn from monitoring datasets on hydrology, water quality and fish assemblages at a total of 144 sites, where 5084 fish were sampled and tested. Breakpoint identification techniques based on curvature in cumulated dominance along with a newly developed weighting calculation model based on theory of mass systems were used to help identify the dominant fish, based on which the presence and abundance of multiple fish were normalized to estimate the integrated habitat suitability index along gradients of various factors, based on their variation with principal habitat factors. Then, the appropriate probability of every principal habitat factor was

An ecological model of the habitat mosaic in estuarine nursery areas: Part II – Projecting effects of sea level rise on fish production

Science.gov (United States)

Understanding the response of fish populations to habitat change mediated by sea level rise (SLR) is a key component of ecosystem-based management. Yet, no direct link has been established between habitat change due to SLR and fish population production. Here we take a coupled ...

Linking effects of anthropogenic debris to ecological impacts

Science.gov (United States)

Browne, Mark Anthony; Underwood, A. J.; Chapman, M. G.; Williams, Rob; Thompson, Richard C.; van Franeker, Jan A.

2015-01-01

Accelerated contamination of habitats with debris has caused increased effort to determine ecological impacts. Strikingly, most work on organisms focuses on sublethal responses to plastic debris. This is controversial because (i) researchers have ignored medical insights about the mechanisms that link effects of debris across lower levels of biological organization to disease and mortality, and (ii) debris is considered non-hazardous by policy-makers, possibly because individuals can be injured or removed from populations and assemblages without ecological impacts. We reviewed the mechanisms that link effects of debris across lower levels of biological organization to assemblages and populations. Using plastic, we show microplastics reduce the ‘health’, feeding, growth and survival of ecosystem engineers. Larger debris alters assemblages because fishing-gear and tyres kill animals and damage habitat-forming plants, and because floating bottles facilitate recruitment and survival of novel taxa. Where ecological linkages are not known, we show how to establish hypothetical links by synthesizing studies to assess the likelihood of impacts. We also consider how population models examine ecological linkages and guide management of ecological impacts. We show that by focusing on linkages to ecological impacts rather than the presence of debris and its sublethal impacts, we could reduce threats posed by debris. PMID:25904661

Coastal habitat and biological community response to dam removal on the Elwha River

Science.gov (United States)

Foley, Melissa M.; Warrick, Jonathan A.; Ritchie, Andrew C.; Stevens, Andrew; Shafroth, Patrick B.; Duda, Jeff; Beirne, Matthew M.; Paradis, Rebecca; Gelfenbaum, Guy R.; McCoy, Randall; Cubley, Erin S.

2017-01-01

Habitat diversity and heterogeneity play a fundamental role in structuring ecological communities. Dam emplacement and removal can fundamentally alter habitat characteristics, which in turn can affect associated biological communities. Beginning in the early 1900s, the Elwha and Glines Canyon dams in Washington, USA, withheld an estimated 30 million tonnes of sediment from river, coastal, and nearshore habitats. During the staged removal of these dams—the largest dam removal project in history—over 14 million tonnes of sediment were released from the former reservoirs. Our interdisciplinary study in coastal habitats—the first of its kind—shows how the physical changes to the river delta and estuary habitats during dam removal were linked to responses in biological communities. Sediment released during dam removal resulted in over a meter of sedimentation in the estuary and over 400 m of expansion of the river mouth delta landform. These changes increased the amount of supratidal and intertidal habitat, but also reduced the influx of seawater into the pre-removal estuary complex. The effects of these geomorphic and hydrologic changes cascaded to biological systems, reducing the abundance of macroinvertebrates and fish in the estuary and shifting community composition from brackish to freshwater-dominated species. Vegetation did not significantly change on the delta, but pioneer vegetation increased during dam removal, coinciding with the addition of newly available habitat. Understanding how coastal habitats respond to large-scale human stressors—and in some cases the removal of those stressors—is increasingly important as human uses and restoration activities increase in these habitats.

Invasion by nonnative brook trout in Panther Creek, Idaho: Roles of local habitat quality, biotic resistance, and connectivity to source habitats

Science.gov (United States)

Benjamin, Joseph R.; Dunham, Jason B.; Dare, M.R.

2007-01-01

Theoretical models and empirical evidence suggest that the invasion of nonnative species in freshwaters is facilitated through the interaction of three factors: habitat quality, biotic resistance, and connectivity. We measured variables that represented each factor to determine which were associated with the occurrence of nonnative brook trout Salvelinus fontinalis in Panther Creek, a tributary to the Salmon River, Idaho. Habitat variables included measures of summer and winter temperature, instream cover, and channel size. The abundance of native rainbow trout Oncorhynchus mykiss within sampled sites was used as a measure of biotic resistance. We also considered the connectivity of sample sites to unconfined valley bottoms, which were considered habitats that may serve as sources for the spread of established populations of brook trout. We analyzed the occurrence of small (<150‐mm [fork length]) and large (≥150‐mm) brook trout separately, assuming that the former represents an established invasion while accounting for the higher potential mobility of the latter. The occurrence of small brook trout was strongly associated with the proximity of sites to large, unconstrained valley bottoms, providing evidence that such habitats may serve as sources for the spread of brook trout invasion. Within sites, winter degree‐days and maximum summer temperature were positively associated with the occurrence of small brook trout. The occurrence of large brook trout was not related to any of the variables considered, perhaps due to the difficulty of linking site‐specific habitat factors to larger and more mobile individuals. The abundance of rainbow trout was not conclusively associated with the occurrence of either small or large brook trout, providing little support for the role of biotic resistance. Overall, our results suggest that source connectivity and local habitat characteristics, but not biotic resistance, influence the establishment and spread of

Assessing the link between coastal urbanization and the quality of nekton habitat in mangrove tidal tributaries

Science.gov (United States)

Krebs, Justin M.; Bell, Susan S.; McIvor, Carole C.

2014-01-01

To assess the potential influence of coastal development on habitat quality for estuarine nekton, we characterized body condition and reproduction for common nekton from tidal tributaries classified as undeveloped, industrial, urban or man-made (i.e., mosquito-control ditches). We then evaluated these metrics of nekton performance, along with several abundance-based metrics and community structure from a companion paper (Krebs et al. 2013) to determine which metrics best reflected variation in land-use and in-stream habitat among tributaries. Body condition was not significantly different among undeveloped, industrial, and man-made tidal tributaries for six of nine taxa; however, three of those taxa were in significantly better condition in urban compared to undeveloped tributaries. Palaemonetes shrimp were the only taxon in significantly poorer condition in urban tributaries. For Poecilia latipinna, there was no difference in body condition (length–weight) between undeveloped and urban tributaries, but energetic condition was significantly better in urban tributaries. Reproductive output was reduced for both P. latipinna (i.e., fecundity) and grass shrimp (i.e., very low densities, few ovigerous females) in urban tributaries; however a tradeoff between fecundity and offspring size confounded meaningful interpretation of reproduction among land-use classes for P. latipinna. Reproductive allotment by P. latipinna did not differ significantly among land-use classes. Canonical correspondence analysis differentiated urban and non-urban tributaries based on greater impervious surface, less natural mangrove shoreline, higher frequency of hypoxia and lower, more variable salinities in urban tributaries. These characteristics explained 36 % of the variation in nekton performance, including high densities of poeciliid fishes, greater energetic condition of sailfin mollies, and low densities of several common nekton and economically important taxa from urban tributaries

Estimating the per-capita contribution of habitats and pathways in a migratory network: A modelling approach

Science.gov (United States)

Wiederholt, Ruscena; Mattsson, Brady J.; Thogmartin, Wayne E.; Runge, Michael C.; Diffendorfer, Jay E.; Erickson, Richard A.; Federico, Paula; Lopez-Hoffman, Laura; Fryxell, John; Norris, D. Ryan; Sample, Christine

2018-01-01

Every year, migratory species undertake seasonal movements along different pathways between discrete regions and habitats. The ability to assess the relative demographic contributions of these different habitats and pathways to the species’ overall population dynamics is critical for understanding the ecology of migratory species, and also has practical applications for management and conservation. Metrics for assessing habitat contributions have been well-developed for metapopulations, but an equivalent metric is not currently available for migratory populations. Here, we develop a framework for estimating the demographic contributions of the discrete habitats and pathways used by migratory species throughout the annual cycle by estimating the per capita contribution of cohorts using these locations. Our framework accounts for seasonal movements between multiple breeding and non-breeding habitats and for both resident and migratory cohorts. We illustrate our framework using a hypothetical migratory network of four habitats, which allows us to better understand how variations in habitat quality affect per capita contributions. Results indicate that per capita contributions for any habitat or pathway are dependent on habitat-specific survival probabilities in all other areas used as part of the migratory circuit, and that contribution metrics are spatially linked (e.g. reduced survival in one habitat also decreases the contribution metric for other habitats). Our framework expands existing theory on the dynamics of spatiotemporally structured populations by developing a generalized approach to estimate the habitat- and pathway-specific contributions of species migrating between multiple breeding and multiple non-breeding habitats for a range of life histories or migratory strategies. Most importantly, it provides a means of prioritizing conservation efforts towards those migratory pathways and habitats that are most critical for the population viability of

Delineating priority habitat areas for the conservation of Andean bears in northern Ecuador

Science.gov (United States)

Peralvo, M.F.; Cuesta, F.; Van Manen, F.

2005-01-01

linked to its occurrence in highland habitats, which play a key role in the maintenance of long-term water supplies.

Implications of Fine-Grained Habitat Fragmentation and Road Mortality for Jaguar Conservation in the Atlantic Forest, Brazil.

Directory of Open Access Journals (Sweden)

Laury Cullen

Full Text Available Jaguar (Panthera onca populations in the Upper Paraná River, in the Brazilian Atlantic Forest region, live in a landscape that includes highly fragmented areas as well as relatively intact ones. We developed a model of jaguar habitat suitability in this region, and based on this habitat model, we developed a spatially structured metapopulation model of the jaguar populations in this area to analyze their viability, the potential impact of road mortality on the populations' persistence, and the interaction between road mortality and habitat fragmentation. In more highly fragmented populations, density of jaguars per unit area is lower and density of roads per jaguar is higher. The populations with the most fragmented habitat were predicted to have much lower persistence in the next 100 years when the model included no dispersal, indicating that the persistence of these populations are dependent to a large extent on dispersal from other populations. This, in turn, indicates that the interaction between road mortality and habitat fragmentation may lead to source-sink dynamics, whereby populations with highly fragmented habitat are maintained only by dispersal from populations with less fragmented habitat. This study demonstrates the utility of linking habitat and demographic models in assessing impacts on species living in fragmented landscapes.

Implications of Fine-Grained Habitat Fragmentation and Road Mortality for Jaguar Conservation in the Atlantic Forest, Brazil.

Science.gov (United States)

Cullen, Laury; Stanton, Jessica C; Lima, Fernando; Uezu, Alexandre; Perilli, Miriam L L; Akçakaya, H Reşit

2016-01-01

Jaguar (Panthera onca) populations in the Upper Paraná River, in the Brazilian Atlantic Forest region, live in a landscape that includes highly fragmented areas as well as relatively intact ones. We developed a model of jaguar habitat suitability in this region, and based on this habitat model, we developed a spatially structured metapopulation model of the jaguar populations in this area to analyze their viability, the potential impact of road mortality on the populations' persistence, and the interaction between road mortality and habitat fragmentation. In more highly fragmented populations, density of jaguars per unit area is lower and density of roads per jaguar is higher. The populations with the most fragmented habitat were predicted to have much lower persistence in the next 100 years when the model included no dispersal, indicating that the persistence of these populations are dependent to a large extent on dispersal from other populations. This, in turn, indicates that the interaction between road mortality and habitat fragmentation may lead to source-sink dynamics, whereby populations with highly fragmented habitat are maintained only by dispersal from populations with less fragmented habitat. This study demonstrates the utility of linking habitat and demographic models in assessing impacts on species living in fragmented landscapes.

Beaver dams maintain fish biodiversity by increasing habitat heterogeneity throughout a low-gradient stream network

Science.gov (United States)

Smith, Joseph M.; Mather, Martha E.

2013-01-01

Understanding the relationship between heterogeneity and biodiversity is an active focus of ecological research. Although habitat heterogeneity is conceptually linked to biodiversity, the amount and configuration of heterogeneity that maintains biodiversity within ecosystems is not well understood, especially for an entire stream network.

Linking effects of anthropogenic debris to ecological impacts.

Science.gov (United States)

Browne, Mark Anthony; Underwood, A J; Chapman, M G; Williams, Rob; Thompson, Richard C; van Franeker, Jan A

2015-05-22

Accelerated contamination of habitats with debris has caused increased effort to determine ecological impacts. Strikingly, most work on organisms focuses on sublethal responses to plastic debris. This is controversial because (i) researchers have ignored medical insights about the mechanisms that link effects of debris across lower levels of biological organization to disease and mortality, and (ii) debris is considered non-hazardous by policy-makers, possibly because individuals can be injured or removed from populations and assemblages without ecological impacts. We reviewed the mechanisms that link effects of debris across lower levels of biological organization to assemblages and populations. Using plastic, we show microplastics reduce the 'health', feeding, growth and survival of ecosystem engineers. Larger debris alters assemblages because fishing-gear and tyres kill animals and damage habitat-forming plants, and because floating bottles facilitate recruitment and survival of novel taxa. Where ecological linkages are not known, we show how to establish hypothetical links by synthesizing studies to assess the likelihood of impacts. We also consider how population models examine ecological linkages and guide management of ecological impacts. We show that by focusing on linkages to ecological impacts rather than the presence of debris and its sublethal impacts, we could reduce threats posed by debris. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Habitats and Species Covered by the EEC Habitats Directive

DEFF Research Database (Denmark)

Pihl, S.; Søgaard, B.; Ejrnæs, R.

of Conservation (SAC's), Natura 2000. The designations are based upon the presence of 60 of the natural habitat types listed in Annex I of the Directive and approx. 44 of the species listed in Annex II which occur within the territory of Denmark and for the conservation of which the Community has a special...... and the Danish county authorities have initiated a co-operative programme to provide and compile the data necessary to assess the conservation status of the natural habitat types and species concerned. The purpose of this report is to present the conservation status of the habitats and species in Denmark...

Predicting future mangrove forest migration in the Everglades under rising sea level

Science.gov (United States)

Doyle, Thomas W.

2003-01-01

Mangroves are highly productive ecosystems that provide valued habitat for fish and shorebirds. Mangrove forests are universally composed of relatively few tree species and a single overstory strata. Three species of true mangroves are common to intertidal zones of the Caribbean and Gulf of Mexico Coast, namely, black mangrove (Avicennia germinans), white mangrove (Laguncularia racemosa), and red mangrove (Rhizophora mangle). Mangrove forests occupy intertidal settings of the coastal margin of the Everglades along the southwest tip of the Florida peninsula (fig. 1).

Modelling Fish Habitat Suitability in the Eastern English Channel. Application to community habitat level

OpenAIRE

Vaz, Sandrine; Carpentier, Andre; Loots, Christophe; Koubbi, Philippe

2004-01-01

Valuable marine habitats and living resources can be found in the Eastern English Channel and in 2003, a Franco-British Interreg IIIA project, ‘Eastern Channel Habitat Atlas for Marine Resource Management’ (CHARM), was initiated to support decision-making for management of essential fish habitats. Fish habitat corresponds to geographic areas within which ranges of environmental factors define the presence of a particular species. Habitat Suitability index (HSI) modelling was used to relate fi...

Two-dimensional physical habitat modeling of effects of habitat structures on urban stream restoration

Directory of Open Access Journals (Sweden)

Dongkyun Im

2011-12-01

Full Text Available River corridors, even if highly modified or degraded, still provide important habitats for numerous biological species, and carry high aesthetic and economic values. One of the keys to urban stream restoration is recovery and maintenance of ecological flows sufficient to sustain aquatic ecosystems. In this study, the Hongje Stream in the Seoul metropolitan area of Korea was selected for evaluating a physically-based habitat with and without habitat structures. The potential value of the aquatic habitat was evaluated by a weighted usable area (WUA using River2D, a two-dimensional hydraulic model. The habitat suitability for Zacco platypus in the Hongje Stream was simulated with and without habitat structures. The computed WUA values for the boulder, spur dike, and riffle increased by about 2%, 7%, and 131%, respectively, after their construction. Also, the three habitat structures, especially the riffle, can contribute to increasing hydraulic heterogeneity and enhancing habitat diversity.

Trait- and size-based descriptions of trophic links in freshwater food webs: current status and perspectives

Directory of Open Access Journals (Sweden)

David S. Boukal

2014-04-01

Full Text Available Biotic interactions in aquatic communities are dominated by predation, and the distribution of trophic link strengths in aquatic food webs crucially impacts their dynamics and stability. Although individual body size explains a large proportion of variation in trophic link strengths in aquatic habitats, current predominately body size-based views can gain additional realism by incorporating further traits. Functional traits that potentially affect the strength of trophic links can be classified into three groups: i body size, ii traits that identify the spatiotemporal overlap between the predators and their prey, and iii predator foraging and prey vulnerability traits, which are readily available for many taxa. Relationship between these trait groups and trophic link strength may be further modified by population densities, habitat complexity, temperature and other abiotic factors. I propose here that this broader multi-trait framework can utilize concepts, ideas and existing data from research on metabolic ecology, ecomorphology, animal personalities and role of habitats in community structuring. The framework can be used to investigate non-additive effects of traits on trophic interactions, shed more light on the structuring of local food webs and evaluate the merits of taxonomic and functional group approaches in the description of predator-prey interactions. Development of trait- and size-based descriptions of food webs could be particularly fruitful in limnology given the relative paucity of well resolved datasets in standing waters. 

Small-scale demographic structure suggests preemptive behavior in a flocking shorebird

NARCIS (Netherlands)

Leyrer, J.; Lok, T.; Brugge, M.; Dekinga, A.; van Gils, J.A.; Sandercock, B.K.; Piersma, T.

2012-01-01

Under the ideal-free distribution, omniscient individuals with similar habitat requirements that are free to move should be distributed such that no individual can improve fitness by changing sites; deviations would indicate trade-offs and constraints on ranging behavior. We studied site occupancy

Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi.

Science.gov (United States)

Godhe, Anna; Härnström, Karolina

2010-10-01

Dormant life stages are important strategies for many aquatic organisms. The formation of resting stages will provide a refuge from unfavourable conditions in the water column, and their successive accumulation in the benthos will constitute a genetic reservoir for future planktonic populations. We have determined the genetic structure of a common bloom-forming diatom, Skeletonema marinoi, in the sediment and the plankton during spring, summer and autumn two subsequent years (2007-2009) in Gullmar Fjord on the Swedish west coast. Eight polymorphic microsatellite loci were used to assess the level of genetic differentiation and the respective gene diversity of the two different habitats. We also determined the degree of genetic differentiation between the seed banks inside the fjord and the open sea. The results indicate that Gullmar Fjord has one dominant endogenous population of S. marinoi, which is genetically differentiated from the open sea population. The fjord population is encountered in the plankton and in the sediment. Shifts from the dominant population can happen, and in our study, two genetically differentiated plankton populations, displaying reduced genetic diversity, occurred in September 2007 and 2008. Based on our results, we suggest that sill fjords maintain local long-lived and well-adapted protist populations, which continuously shift between the planktonic and benthic habitats. Intermittently, short-lived and mainly asexually reproducing populations can replace the dominant population in the water column, without influencing the genetic structure of the benthic seed bank. © 2010 Blackwell Publishing Ltd.

Food web complexity and stability across habitat connectivity gradients.

Science.gov (United States)

LeCraw, Robin M; Kratina, Pavel; Srivastava, Diane S

2014-12-01

The effects of habitat connectivity on food webs have been studied both empirically and theoretically, yet the question of whether empirical results support theoretical predictions for any food web metric other than species richness has received little attention. Our synthesis brings together theory and empirical evidence for how habitat connectivity affects both food web stability and complexity. Food web stability is often predicted to be greatest at intermediate levels of connectivity, representing a compromise between the stabilizing effects of dispersal via rescue effects and prey switching, and the destabilizing effects of dispersal via regional synchronization of population dynamics. Empirical studies of food web stability generally support both this pattern and underlying mechanisms. Food chain length has been predicted to have both increasing and unimodal relationships with connectivity as a result of predators being constrained by the patch occupancy of their prey. Although both patterns have been documented empirically, the underlying mechanisms may differ from those predicted by models. In terms of other measures of food web complexity, habitat connectivity has been empirically found to generally increase link density but either reduce or have no effect on connectance, whereas a unimodal relationship is expected. In general, there is growing concordance between empirical patterns and theoretical predictions for some effects of habitat connectivity on food webs, but many predictions remain to be tested over a full connectivity gradient, and empirical metrics of complexity are rarely modeled. Closing these gaps will allow a deeper understanding of how natural and anthropogenic changes in connectivity can affect real food webs.

European red list of habitats. Part 1: Marine habitats

NARCIS (Netherlands)

Gubbay, S.; Sanders, N.; Haynes, T.; Janssen, J.A.M.; Rodwell, J.R.; Nieto, A.; Garcia Criado, M.; Beal, S.; Borg, J.

2016-01-01

The European Red List of Habitats provides an overview of the risk
of collapse (degree of endangerment) of marine, terrestrial and
freshwater habitats in the European Union (EU28) and adjacent
regions (EU28+), based on a consistent set of categories and
criteria, and detailed data

Wildlife habitats in managed rangelands—the Great Basin of southeastern Oregon: manmade habitats.

Science.gov (United States)

Chris Maser; Jack Ward Thomas; Ira David Luman; Ralph. Anderson

1979-01-01

Manmade structures on rangelands provide specialized habitats for some species. These habitats and how they function as specialized habitat features are examined in this publication. The relationships of the wildlife of the Great Basin to such structures are detailed.

Contrasts in short- and long-term responses of Mediterranean reptile species to fire and habitat structure.

Science.gov (United States)

Santos, Xavier; Badiane, Arnaud; Matos, Cátia

2016-01-01

Changes in habitat structure constitute a major factor explaining responses of reptiles to fire. However, few studies have examined habitat factors that covary with fire-history variables to explain reptile responses. We hypothesise that more complex habitats should support richer reptile communities, and that species-specific relative abundance should be related to particular habitat features. From spring 2012-2014, twenty-five transects were surveyed in the Albera Region (north-east Iberia). The vegetation structure was measured and the extent of habitat types in a 1000-m buffer around each transect calculated. Reptile-community metrics (species richness and reptile abundance) were related to fire history, vegetation structure, and habitat types, using generalized additive models. These metrics correlated with habitat-structure variables but not with fire history. The number of species increased with more complex habitats but decreased with pine-plantation abundance in the 1000-m buffer. We found contrasting responses among reptiles in terms of time since fire and those responses differed according to vegetation variables and habitat types. An unplanned fire in August 2012 provided the opportunity to compare reptile abundance values between pre-fire and the short term (1-2 years) after the fire. Most species exhibited a negative short-term response to the 2012 fire except Tarentola mauritanica, a gecko that inhabits large rocks, as opposed to other ground-dwelling species. In the reptiles studied, contrasting responses to time since fire are consistent with the habitat-accommodation model of succession. These differences are linked to specific microhabitat preferences and suggest that functional traits can be used to predict species-specific responses to fire.

Oil sands terrestrial habitat and risk modeling for disturbance and reclamation - Phase I report

Energy Technology Data Exchange (ETDEWEB)

Welham, C. [FORRx Consulting Inc., Belcarra, BC (Canada)

2010-11-15

The main purpose of this study is to build a framework that includes risk management and strategic decision-making to assess the impact of natural and industrial disturbance on ecosystem products and services and on the existence of habitat for terrestrial species in Alberta's Lower Athabasca planning region. This will include an evaluation of the impact of disturbance, conservation and reclamation activities associated with oil sands development both at the lease and regional levels. The basecase scenario, established in Phase I, includes a dendrochronology study of the link between climate and tree growth in the sub boreal region that comprises oil sands mining, an analysis of habitat availability for 10 wildlife species compared with reclamation activities on the Kearl Lake mine, and an examination of the potential for development of high levels of water stress in recent reclamation plantations at the Kearl Lake mine. Four tree species of the subboreal forests of Alberta and Saskatchewan were considered for the dendrochronology study: the white spruce or Picea glauca, the black spruce or Picea mariana, the jack pine or Pinus banksiana, and the trembling aspen or Populus tremuloides. This study shows that the water stress observed during the year has restricted the radial growth of white spruce and a link has been established between radial growth and increasing season precipitation and summer temperatures. The purposes of the habitat suitability analysis were to list habitats suitability models that could be applied to Alberta boreal forests, distinguish the parameters used in those models that can be simulated with an ecosystem simulation model, simulate the reclamation prescriptions detailed in the Kearl Lake EIA documents with the ecosystem simulation model and generate output suitable for populating each habitat suitability model. The establishment of ecologically viable reclamation plans in the oil sands region can be hard to manage regarding the

Combining a dispersal model with network theory to assess habitat connectivity.

Science.gov (United States)

Lookingbill, Todd R; Gardner, Robert H; Ferrari, Joseph R; Keller, Cherry E

2010-03-01

Assessing the potential for threatened species to persist and spread within fragmented landscapes requires the identification of core areas that can sustain resident populations and dispersal corridors that can link these core areas with isolated patches of remnant habitat. We developed a set of GIS tools, simulation methods, and network analysis procedures to assess potential landscape connectivity for the Delmarva fox squirrel (DFS; Sciurus niger cinereus), an endangered species inhabiting forested areas on the Delmarva Peninsula, USA. Information on the DFS's life history and dispersal characteristics, together with data on the composition and configuration of land cover on the peninsula, were used as input data for an individual-based model to simulate dispersal patterns of millions of squirrels. Simulation results were then assessed using methods from graph theory, which quantifies habitat attributes associated with local and global connectivity. Several bottlenecks to dispersal were identified that were not apparent from simple distance-based metrics, highlighting specific locations for landscape conservation, restoration, and/or squirrel translocations. Our approach links simulation models, network analysis, and available field data in an efficient and general manner, making these methods useful and appropriate for assessing the movement dynamics of threatened species within landscapes being altered by human and natural disturbances.

Habitat Selectivity and Reliance on Live Corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae)

KAUST Repository

Coker, Darren James; Hoey, Andrew S.; Wilson, Shaun K.; Depczynski, Martial; Graham, Nicholas A. J.; Hobbs, Jean-Paul A.; Holmes, Thomas H.; Pratchett, Morgan S.

2015-01-01

Hawkfishes (family: Cirrhitidae) are small conspicuous reef predators that commonly perch on, or shelter within, the branches of coral colonies. This study examined habitat associations of hawkfishes, and explicitly tested whether hawkfishes associate with specific types of live coral. Live coral use and habitat selectivity of hawkfishes was explored at six locations from Chagos in the central Indian Ocean extending east to Fiji in the Pacific Ocean. A total of 529 hawkfishes from seven species were recorded across all locations with 63% of individuals observed perching on, or sheltering within, live coral colonies. Five species (all except Cirrhitus pinnulatus and Cirrhitichthys oxycephalus) associated with live coral habitats. Cirrhitichthys falco selected for species of Pocillopora while Paracirrhites arcatus and P. forsteri selected for both Pocillopora and Acropora, revealing that these habitats are used disproportionately more than expected based on the local cover of these coral genera. Habitat selection was consistent across geographic locations, and species of Pocillopora were the most frequently used and most consistently selected even though this coral genus never comprised more than 6% of the total coral cover at any of the locations. Across locations, Paracirrhites arcatus and P. forsteri were the most abundant species and variation in their abundance corresponded with local patterns of live coral cover and abundance of Pocilloporid corals, respectively. These findings demonstrate the link between small predatory fishes and live coral habitats adding to the growing body of literature highlighting that live corals (especially erect branching corals) are critically important for sustaining high abundance and diversity of fishes on coral reefs.

Habitat Selectivity and Reliance on Live Corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae.

Directory of Open Access Journals (Sweden)

Darren J Coker

Full Text Available Hawkfishes (family: Cirrhitidae are small conspicuous reef predators that commonly perch on, or shelter within, the branches of coral colonies. This study examined habitat associations of hawkfishes, and explicitly tested whether hawkfishes associate with specific types of live coral. Live coral use and habitat selectivity of hawkfishes was explored at six locations from Chagos in the central Indian Ocean extending east to Fiji in the Pacific Ocean. A total of 529 hawkfishes from seven species were recorded across all locations with 63% of individuals observed perching on, or sheltering within, live coral colonies. Five species (all except Cirrhitus pinnulatus and Cirrhitichthys oxycephalus associated with live coral habitats. Cirrhitichthys falco selected for species of Pocillopora while Paracirrhites arcatus and P. forsteri selected for both Pocillopora and Acropora, revealing that these habitats are used disproportionately more than expected based on the local cover of these coral genera. Habitat selection was consistent across geographic locations, and species of Pocillopora were the most frequently used and most consistently selected even though this coral genus never comprised more than 6% of the total coral cover at any of the locations. Across locations, Paracirrhites arcatus and P. forsteri were the most abundant species and variation in their abundance corresponded with local patterns of live coral cover and abundance of Pocilloporid corals, respectively. These findings demonstrate the link between small predatory fishes and live coral habitats adding to the growing body of literature highlighting that live corals (especially erect branching corals are critically important for sustaining high abundance and diversity of fishes on coral reefs.

Habitat Selectivity and Reliance on Live Corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae).

Science.gov (United States)

Coker, Darren J; Hoey, Andrew S; Wilson, Shaun K; Depczynski, Martial; Graham, Nicholas A J; Hobbs, Jean-Paul A; Holmes, Thomas H; Pratchett, Morgan S

2015-01-01

Hawkfishes (family: Cirrhitidae) are small conspicuous reef predators that commonly perch on, or shelter within, the branches of coral colonies. This study examined habitat associations of hawkfishes, and explicitly tested whether hawkfishes associate with specific types of live coral. Live coral use and habitat selectivity of hawkfishes was explored at six locations from Chagos in the central Indian Ocean extending east to Fiji in the Pacific Ocean. A total of 529 hawkfishes from seven species were recorded across all locations with 63% of individuals observed perching on, or sheltering within, live coral colonies. Five species (all except Cirrhitus pinnulatus and Cirrhitichthys oxycephalus) associated with live coral habitats. Cirrhitichthys falco selected for species of Pocillopora while Paracirrhites arcatus and P. forsteri selected for both Pocillopora and Acropora, revealing that these habitats are used disproportionately more than expected based on the local cover of these coral genera. Habitat selection was consistent across geographic locations, and species of Pocillopora were the most frequently used and most consistently selected even though this coral genus never comprised more than 6% of the total coral cover at any of the locations. Across locations, Paracirrhites arcatus and P. forsteri were the most abundant species and variation in their abundance corresponded with local patterns of live coral cover and abundance of Pocilloporid corals, respectively. These findings demonstrate the link between small predatory fishes and live coral habitats adding to the growing body of literature highlighting that live corals (especially erect branching corals) are critically important for sustaining high abundance and diversity of fishes on coral reefs.

Habitat Selectivity and Reliance on Live Corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae)

KAUST Repository

Coker, Darren James

2015-11-03

Hawkfishes (family: Cirrhitidae) are small conspicuous reef predators that commonly perch on, or shelter within, the branches of coral colonies. This study examined habitat associations of hawkfishes, and explicitly tested whether hawkfishes associate with specific types of live coral. Live coral use and habitat selectivity of hawkfishes was explored at six locations from Chagos in the central Indian Ocean extending east to Fiji in the Pacific Ocean. A total of 529 hawkfishes from seven species were recorded across all locations with 63% of individuals observed perching on, or sheltering within, live coral colonies. Five species (all except Cirrhitus pinnulatus and Cirrhitichthys oxycephalus) associated with live coral habitats. Cirrhitichthys falco selected for species of Pocillopora while Paracirrhites arcatus and P. forsteri selected for both Pocillopora and Acropora, revealing that these habitats are used disproportionately more than expected based on the local cover of these coral genera. Habitat selection was consistent across geographic locations, and species of Pocillopora were the most frequently used and most consistently selected even though this coral genus never comprised more than 6% of the total coral cover at any of the locations. Across locations, Paracirrhites arcatus and P. forsteri were the most abundant species and variation in their abundance corresponded with local patterns of live coral cover and abundance of Pocilloporid corals, respectively. These findings demonstrate the link between small predatory fishes and live coral habitats adding to the growing body of literature highlighting that live corals (especially erect branching corals) are critically important for sustaining high abundance and diversity of fishes on coral reefs.

Wildfire may increase habitat quality for spring Chinook salmon in the Wenatchee River subbasin, WA, USA

Science.gov (United States)

Flitcroft, Rebecca L; Falke, Jeffrey A.; Reeves, Gordon H.; Hessburg, Paul F.; McNyset, Kris M.; Benda, Lee E.

2016-01-01

which in-stream habitat for most life stages has a consistently positive response to fire. This compares to the historic distribution of spring Chinook, in which in-stream habitat exhibited a variable response to fire, including decreases in habitat quality overall or for specific life stages. This suggests that as the distribution of spring Chinook has decreased, they now occupy those areas with the most positive potential response to fire. Our work shows the potentially positive link between wildfire and aquatic habitat that supports forest managers in setting broader goals for fire management, perhaps leading to less fire suppression in some situations.

A NEW HABITAT CLASSIFICATION AND MANUAL FOR STANDARDIZED HABITAT MAPPING

Directory of Open Access Journals (Sweden)

A. KUN

2007-01-01

Full Text Available Today the documentation of natural heritage with scientific methods but for conservation practice – like mapping of actual vegetation – becomes more and more important. For this purpose mapping guides containing only the names and descriptions of vegetation types are not sufficient. Instead, new, mapping-oriented vegetation classification systems and handbooks are needed. There are different standardised systems fitted to the characteristics of a region already published and used successfully for surveying large territories. However, detailed documentation of the aims and steps of their elaboration is still missing. Here we present a habitat-classification method developed specifically for mapping and the steps of its development. Habitat categories and descriptions reflect site conditions, physiognomy and species composition as well. However, for species composition much lower role was given deliberately than in the phytosociological systems. Recognition and mapping of vegetation types in the field is highly supported by a definition, list of subtypes and list of ‘types not belonging to this habitat category’. Our system is two-dimensional: the first dimension is habitat type, the other is naturalness based habitat quality. The development of the system was conducted in two steps, over 200 mappers already tested it over 7000 field days in different projects.

Habitat Ecology Visual Surveys of Demersal Fishes and Habitats off California

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Since 1992, the Habitat Ecology team has been conducting fishery independent, visual surveys of demersal fishes and associated habitats in deep water (20 to 900...

Linking GPS Telemetry Surveys and Scat Analyses Helps Explain Variability in Black Bear Foraging Strategies.

Science.gov (United States)

Lesmerises, Rémi; Rebouillat, Lucie; Dussault, Claude; St-Laurent, Martin-Hugues

2015-01-01

Studying diet is fundamental to animal ecology and scat analysis, a widespread approach, is considered a reliable dietary proxy. Nonetheless, this method has weaknesses such as non-random sampling of habitats and individuals, inaccurate evaluation of excretion date, and lack of assessment of inter-individual dietary variability. We coupled GPS telemetry and scat analyses of black bears Ursus americanus Pallas to relate diet to individual characteristics and habitat use patterns while foraging. We captured 20 black bears (6 males and 14 females) and fitted them with GPS/Argos collars. We then surveyed GPS locations shortly after individual bear visits and collected 139 feces in 71 different locations. Fecal content (relative dry matter biomass of ingested items) was subsequently linked to individual characteristics (sex, age, reproductive status) and to habitats visited during foraging bouts using Brownian bridges based on GPS locations prior to feces excretion. At the population level, diet composition was similar to what was previously described in studies on black bears. However, our individual-based method allowed us to highlight different intra-population patterns, showing that sex and female reproductive status had significant influence on individual diet. For example, in the same habitats, females with cubs did not use the same food sources as lone bears. Linking fecal content (i.e., food sources) to habitat previously visited by different individuals, we demonstrated a potential differential use of similar habitats dependent on individual characteristics. Females with cubs-of-the-year tended to use old forest clearcuts (6-20 years old) to feed on bunchberry, whereas females with yearling foraged for blueberry and lone bears for ants. Coupling GPS telemetry and scat analyses allows for efficient detection of inter-individual or inter-group variations in foraging strategies and of linkages between previous habitat use and food consumption, even for cryptic

Linking GPS Telemetry Surveys and Scat Analyses Helps Explain Variability in Black Bear Foraging Strategies.

Directory of Open Access Journals (Sweden)

Rémi Lesmerises

Full Text Available Studying diet is fundamental to animal ecology and scat analysis, a widespread approach, is considered a reliable dietary proxy. Nonetheless, this method has weaknesses such as non-random sampling of habitats and individuals, inaccurate evaluation of excretion date, and lack of assessment of inter-individual dietary variability. We coupled GPS telemetry and scat analyses of black bears Ursus americanus Pallas to relate diet to individual characteristics and habitat use patterns while foraging. We captured 20 black bears (6 males and 14 females and fitted them with GPS/Argos collars. We then surveyed GPS locations shortly after individual bear visits and collected 139 feces in 71 different locations. Fecal content (relative dry matter biomass of ingested items was subsequently linked to individual characteristics (sex, age, reproductive status and to habitats visited during foraging bouts using Brownian bridges based on GPS locations prior to feces excretion. At the population level, diet composition was similar to what was previously described in studies on black bears. However, our individual-based method allowed us to highlight different intra-population patterns, showing that sex and female reproductive status had significant influence on individual diet. For example, in the same habitats, females with cubs did not use the same food sources as lone bears. Linking fecal content (i.e., food sources to habitat previously visited by different individuals, we demonstrated a potential differential use of similar habitats dependent on individual characteristics. Females with cubs-of-the-year tended to use old forest clearcuts (6-20 years old to feed on bunchberry, whereas females with yearling foraged for blueberry and lone bears for ants. Coupling GPS telemetry and scat analyses allows for efficient detection of inter-individual or inter-group variations in foraging strategies and of linkages between previous habitat use and food consumption, even

Shape, colour plasticity, and habitat use indicate morph-specific camouflage strategies in a marine shrimp.

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Duarte, Rafael C; Stevens, Martin; Flores, Augusto A V

2016-10-18

Colour and shape polymorphisms are important features of many species and may allow individuals to exploit a wider array of habitats, including through behavioural differences among morphs. In addition, differences among individuals in behaviour and morphology may reflect different strategies, for example utilising different approaches to camouflage. Hippolyte obliquimanus is a small shrimp species inhabiting different shallow-water vegetated habitats. Populations comprise two main morphs: homogeneous shrimp of variable colour (H) and transparent individuals with coloured stripes (ST). These morphs follow different distribution patterns between their main algal habitats; the brown weed Sargassum furcatum and the pink-red weed Galaxaura marginata. In this study, we first investigated morph-specific colour change and habitat selection, as mechanisms underlying camouflage and spatial distribution patterns in nature. Then, we examined habitat fidelity, mobility, and morphological traits, further indicating patterns of habitat use. H shrimp are capable of changing colour in just a few days towards their algal background, achieving better concealment in the more marginal, and less preferred, red weed habitat. Furthermore, laboratory trials showed that habitat fidelity is higher for H shrimp, whereas swimming activity is higher for the ST morph, aligned to morphological evidence indicating these two morphs comprise a more benthic (H) and a more pelagic (ST) life-style, respectively. Results suggest that H shrimp utilise a camouflage strategy specialised to a limited number of backgrounds at any one time, whereas ST individuals comprise a phenotype with more generalist camouflage (transparency) linked to a more generalist background utilisation. The coexistence within a population of distinct morphotypes with apparently alternative strategies of habitat use and camouflage may reflect differential responses to substantial seasonal changes in macroalgal cover. Our findings

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

NARCIS (Netherlands)

Martino, M.E.; Bayjanov, J.; Caffrey, B.E.; Wels, M.; Joncour, P.; Hughes, S.; Gillet, B.; Kleerebezem, M; Hijum, S.A. van; Leulier, F.

2016-01-01

The ability of bacteria to adapt to diverse environmental conditions is well-known. The process of bacterial adaptation to a niche has been linked to large changes in the genome content, showing that many bacterial genomes reflect the constraints imposed by their habitat. However, some highly

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

NARCIS (Netherlands)

Martino, Maria Elena; Bayjanov, Jumamurat R.; Caffrey, Brian E.; Wels, Michiel; Joncour, Pauline; Hughes, Sandrine; Gillet, Benjamin; Kleerebezem, Michiel; Hijum, van Sacha A.F.T.; Leulier, François

2016-01-01

The ability of bacteria to adapt to diverse environmental conditions is well-known. The process of bacterial adaptation to a niche has been linked to large changes in the genome content, showing that many bacterial genomes reflect the constraints imposed by their habitat. However, some highly

Habitat Blocks and Wildlife Corridors

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Vermont Center for Geographic Information — Habitat blocks are areas of contiguous forest and other natural habitats that are unfragmented by roads, development, or agriculture. Vermonts habitat blocks are...

Linking movement and reproductive history of brook trout to assess habitat connectivity in a heterogeneous stream network

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Yoichiro Kanno; Benjamin H. Letcher; Jason A. Coombs; Keith H. Nislow; Andrew R. Whiteley

2014-01-01

Defining functional connectivity between habitats in spatially heterogeneous landscapes is a particular challenge for small-bodied aquatic species. Traditional approaches (e.g. mark-recapture studies) preclude an assessment of animal movement over the life cycle (birth to reproduction), and movement of individuals may not represent the degree of gene movement for...

Connecting science, policy, and implementation for landscape-scale habitat connectivity.

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Brodie, Jedediah F; Paxton, Midori; Nagulendran, Kangayatkarasu; Balamurugan, G; Clements, Gopalasamy Reuben; Reynolds, Glen; Jain, Anuj; Hon, Jason

2016-10-01

We examined the links between the science and policy of habitat corridors to better understand how corridors can be implemented effectively. As a case study, we focused on a suite of landscape-scale connectivity plans in tropical and subtropical Asia (Malaysia, Singapore, and Bhutan). The process of corridor designation may be more efficient if the scientific determination of optimal corridor locations and arrangement is synchronized in time with political buy-in and establishment of policies to create corridors. Land tenure and the intactness of existing habitat in the region are also important to consider because optimal connectivity strategies may be very different if there are few, versus many, political jurisdictions (including commercial and traditional land tenures) and intact versus degraded habitat between patches. Novel financing mechanisms for corridors include bed taxes, payments for ecosystem services, and strategic forest certifications. Gaps in knowledge of effective corridor design include an understanding of how corridors, particularly those managed by local communities, can be protected from degradation and unsustainable hunting. There is a critical need for quantitative, data-driven models that can be used to prioritize potential corridors or multicorridor networks based on their relative contributions to long-term metacommunity persistence. © 2016 Society for Conservation Biology.

Mosquito Vector Diversity across Habitats in Central Thailand Endemic for Dengue and Other Arthropod-Borne Diseases

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Thongsripong, Panpim; Green, Amy; Kittayapong, Pattamaporn; Kapan, Durrell; Wilcox, Bruce; Bennett, Shannon

2013-01-01

Recent years have seen the greatest ecological disturbances of our times, with global human expansion, species and habitat loss, climate change, and the emergence of new and previously-known infectious diseases. Biodiversity loss affects infectious disease risk by disrupting normal relationships between hosts and pathogens. Mosquito-borne pathogens respond to changing dynamics on multiple transmission levels and appear to increase in disturbed systems, yet current knowledge of mosquito diversity and the relative abundance of vectors as a function of habitat change is limited. We characterize mosquito communities across habitats with differing levels of anthropogenic ecological disturbance in central Thailand. During the 2008 rainy season, adult mosquito collections from 24 sites, representing 6 habitat types ranging from forest to urban, yielded 62,126 intact female mosquitoes (83,325 total mosquitoes) that were assigned to 109 taxa. Female mosquito abundance was highest in rice fields and lowest in forests. Diversity indices and rarefied species richness estimates indicate the mosquito fauna was more diverse in rural and less diverse in rice field habitats, while extrapolated estimates of true richness (Chao1 and ACE) indicated higher diversity in the forest and fragmented forest habitats and lower diversity in the urban. Culex sp. (Vishnui subgroup) was the most common taxon found overall and the most frequent in fragmented forest, rice field, rural, and suburban habitats. The distributions of species of medical importance differed significantly across habitat types and were always lowest in the intact, forest habitat. The relative abundance of key vector species, Aedes aegypti and Culex quinquefasciatus, was negatively correlated with diversity, suggesting that direct species interactions and/or habitat-mediated factors differentially affecting invasive disease vectors may be important mechanisms linking biodiversity loss to human health. Our results are an

Forecasting effects of climate change on Great Lakes fisheries: models that link habitat supply to population dynamics can help

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Jones, Michael L.; Shuter, Brian J.; Zhao, Yingming; Stockwell, Jason D.

2006-01-01

Future changes to climate in the Great Lakes may have important consequences for fisheries. Evidence suggests that Great Lakes air and water temperatures have risen and the duration of ice cover has lessened during the past century. Global circulation models (GCMs) suggest future warming and increases in precipitation in the region. We present new evidence that water temperatures have risen in Lake Erie, particularly during summer and winter in the period 1965–2000. GCM forecasts coupled with physical models suggest lower annual runoff, less ice cover, and lower lake levels in the future, but the certainty of these forecasts is low. Assessment of the likely effects of climate change on fish stocks will require an integrative approach that considers several components of habitat rather than water temperature alone. We recommend using mechanistic models that couple habitat conditions to population demographics to explore integrated effects of climate-caused habitat change and illustrate this approach with a model for Lake Erie walleye (Sander vitreum). We show that the combined effect on walleye populations of plausible changes in temperature, river hydrology, lake levels, and light penetration can be quite different from that which would be expected based on consideration of only a single factor.

75 FR 34975 - Notice of Estuary Habitat Restoration Council's Intent to Revise its Estuary Habitat Restoration...

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2010-06-21

... Estuary Habitat Restoration Council's Intent to Revise its Estuary Habitat Restoration Strategy; Request... interagency Estuary Habitat Restoration Council, is providing notice of the Council's intent to revise the ''Estuary Habitat Restoration Strategy'' and requesting public comments to guide its revision. DATES...

Vacant habitats in the Universe.

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Cockell, Charles S

2011-02-01

The search for life on other planets usually makes the assumption that where there is a habitat, it will contain life. On the present-day Earth, uninhabited habitats (or vacant habitats) are rare, but might occur, for example, in subsurface oils or impact craters that have been thermally sterilized in the past. Beyond Earth, vacant habitats might similarly exist on inhabited planets or on uninhabited planets, for example on a habitable planet where life never originated. The hypothesis that vacant habitats are abundant in the Universe is testable by studying other planets. In this review, I discuss how the study of vacant habitats might ultimately inform an understanding of how life has influenced geochemical conditions on Earth. Copyright © 2010 Elsevier Ltd. All rights reserved.

Habitat associations and distribution of the hyperbenthic shrimp, Nauticaris marionis, around the sub-Antarctic Prince Edward Islands

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Haley, Craig; von der Meden, Charles; Atkinson, Lara; Reed, Cecile

2017-09-01

The association of organisms with particular habitats and habitat-forming organisms, can strongly influence species distributions, interactions and wider ecosystem services. At the sub-Antarctic Prince Edward Islands, the caridean shrimp Nauticaris marionis is a principal part of the benthic ecosystem, occurring between ca. 50 m and 600 m. Its role as a trophic link between the primary productivity and higher predators is established, but little is understood of its in situ habitat usage and associations or of how these structure patterns of abundance. We investigated these aspects directly using a benthic camera sled, sampling 27 stations between 50 m and 500 m. Substratum type was characterised, and estimates of percentage cover of the 13 main groups of habitat-forming epibenthic taxa were made, alongside absolute counts of N. marionis within 'digital quadrats' drawn from 300 m transects. The distribution of N. marionis was influenced by depth, substratum type and overall biogenic cover, being limited to habitats between 50 and 160 m depth on mud or gravel substrata only, and having > 50% biogenic cover. The presence/absence of N. marionis related to significantly different epibenthic assemblages (termed biogenic habitats), but this effect was contingent on depth. Likewise, densities of N. marionis were significantly affected by biogenic habitat type, identifying an association with two biogenic habitat groups, one dominated by red-algae, the other by structurally complex bryozoan species. These associations likely relate to the structural complexity of the two habitat groups, rather than the specific taxa involved. The apparent absence of N. marionis at depths > 160 m contrasts with earlier records and poses questions about the trophic importance of the shrimp in deeper habitats.

Identifying Pelagic Habitat Hotspots of Neon Flying Squid in the Temperate Waters of the Central North Pacific.

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Alabia, Irene D; Saitoh, Sei-Ichi; Mugo, Robinson; Igarashi, Hiromichi; Ishikawa, Yoichi; Usui, Norihisa; Kamachi, Masafumi; Awaji, Toshiyuki; Seito, Masaki

2015-01-01

We identified the pelagic habitat hotspots of the neon flying squid (Ommastrephes bartramii) in the central North Pacific from May to July and characterized the spatial patterns of squid aggregations in relation to oceanographic features such as mesoscale oceanic eddies and the Transition Zone Chlorophyll-a Front (TZCF). The data used for the habitat model construction and analyses were squid fishery information, remotely-sensed and numerical model-derived environmental data from May to July 1999-2010. Squid habitat hotspots were deduced from the monthly Maximum Entropy (MaxEnt) models and were identified as regions of persistent high suitable habitat across the 12-year period. The distribution of predicted squid habitat hotspots in central North Pacific revealed interesting spatial and temporal patterns likely linked with the presence and dynamics of oceanographic features in squid's putative foraging grounds from late spring to summer. From May to June, the inferred patches of squid habitat hotspots developed within the Kuroshio-Oyashio transition zone (KOTZ; 37-40°N) and further expanded north towards the subarctic frontal zone (SAFZ; 40-44°N) in July. The squid habitat hotspots within the KOTZ and areas west of the dateline (160°W-180°) were likely influenced and associated with the highly dynamic and transient oceanic eddies and could possibly account for lower squid suitable habitat persistence obtained from these regions. However, predicted squid habitat hotspots located in regions east of the dateline (180°-160°W) from June to July, showed predominantly higher squid habitat persistence presumably due to their proximity to the mean position of the seasonally-shifting TZCF and consequent utilization of the highly productive waters of the SAFZ.

The importance of historical land use in the maintenance of early successional habitat for a threatened rattlesnake

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Eric M. McCluskey

2018-01-01

Full Text Available Understanding how historic habitat changes have impacted species and searching the past for clues to better understand the current plight of threatened species can help inform and improve future conservation efforts. We coupled species distribution modeling with historical imagery analysis to assess how changes in land use/land cover have influenced the distribution of eastern massasauga rattlesnake (Sistrurus catenatus, a federally threatened species, and its habitat in northeastern Ohio over the past ∼75 years. We also examined land use/land cover changes throughout southern Michigan for a broader perspective on the influence of historical processes on contemporary habitat. There was a pronounced shift in northeastern Ohio land cover from 1938 to 2011 with forest cover becoming the predominant land cover type as agricultural fields were abandoned and succession occurred. Most known eastern massasauga locations in the area were at some point used for agriculture and higher habitat suitability values were associated with agricultural fields that were eventually abandoned. We observed more stable habitat conditions across southern Michigan populations indicating agricultural abandonment was not as necessary for habitat creation in this part of their range. We present a new approach for linking historical landscapes to present day habitat suitability models; permitting inferences on how prior land use/land cover states have influenced the current distribution of species and their habitats. We demonstrate how agricultural abandonment was an important source of early successional habitat for a species that requires an open canopy, a finding applicable to a broad array of species with similar habitat requirements. Keywords: Eastern massasauga, Agriculture, Aerial photography, Maxent

Behavioral response of Corophium volutator to shorebird predation in the upper Bay of Fundy, Canada.

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Elizabeth C MacDonald

Full Text Available Predator avoidance is an important component of predator-prey relationships and can affect prey availability for foraging animals. Each summer, the burrow-dwelling amphipod Corophium volutator is heavily preyed upon by Semipalmated Sandpipers (Calidris pusilla on mudflats in the upper Bay of Fundy, Canada. We conducted three complementary studies to determine if adult C. volutator exhibit predator avoidance behavior in the presence of sandpipers. In a field experiment, we monitored vertical distribution of C. volutator adults in bird exclosures and adjacent control plots before sandpipers arrived and during their stopover. We also made polymer resin casts of C. volutator burrows in the field throughout the summer. Finally, we simulated shorebird pecking in a lab experiment and observed C. volutator behavior in their burrows. C. volutator adults were generally distributed deeper in the sediment later in the summer (after sandpipers arrived. In August, this response was detectably stronger in areas exposed to bird predation than in bird exclosures. During peak predator abundance, many C. volutator adults were beyond the reach of feeding sandpipers (>1.5 cm deep. However, burrow depth did not change significantly throughout the summer. Detailed behavioral observations indicated that C. volutator spent more time at the bottom of their burrow when exposed to a simulated predator compared to controls. This observed redistribution suggests that C. volutator adults move deeper into their burrows as an anti-predator response to the presence of sandpipers. This work has implications for predators that feed on burrow-dwelling invertebrates in soft-sediment ecosystems, as density may not accurately estimate prey availability.

Assessment and management of dead-wood habitat

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Hagar, Joan

2007-01-01

Oregon and Washington, approximately 150 species of wildlife are reported to use dead wood in forests (O’Neil et al., 2001). Forty-seven sensitive and special-status species are associated with dead wood (Appendix A). These are key species for management consideration because concern over small or declining populations is often related to loss of suitable dead-wood habitat (Marshall et al., 1996). Primary excavators (woodpeckers) also are often the focus of dead-wood management, because they perform keystone functions in forest ecosystems by creating cavities for secondary cavity-nesters (Martin and Eadie, 1999; Aubry and Raley, 2002). A diverse guild of secondary cavity-users (including swallows, bluebirds, several species of ducks and owls, ash-throated flycatcher, flying squirrel, bats, and many other species) is unable to excavate dead wood, and therefore relies on cavities created by woodpeckers for nesting sites. Suitable nest cavities are essential for reproduction, and their availability limits population size (Newton, 1994). Thus, populations of secondary cavity-nesters are tightly linked to the habitat requirements of primary excavators. Although managers often focus on decaying wood as habitat for wildlife, the integral role dead wood plays in ecological processes is an equally important consideration for management. Rose et al. (2001) provide a thorough review of the ecological functions of dead wood in Pacific Northwest forests, briefly summarized here. Decaying wood functions in: soil development and productivity, nutrient cycling, nitrogen fixation, and carbon storage. From ridge tops, to headwater streams, to estuaries and coastal marine ecosystems, decaying wood is fundamental to diverse terrestrial and aquatic food webs. Wildlife species that use dead wood for cover or feeding are linked to these ecosystem processes through a broad array of functional roles, including facilitation of decay and trophic interactions with other organisms (Marcot, 2002

Linking movement and reproductive history of brook trout to assess habitat connectivity in a heterogeneous stream network

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Kanno, Yoichiro; Letcher, Benjamin H.; Coombs, Jason A.; Nislow, Keith H.; Whiteley, Andrew R.

2013-01-01

1. Defining functional connectivity between habitats in spatially heterogeneous landscapes is a particular challenge for small-bodied aquatic species. Traditional approaches (e.g. mark–recapture studies) preclude an assessment of animal movement over the life cycle (birth to reproduction), and movement of individuals may not represent the degree of gene movement for fecund species.

Habitat quality influences population distribution, individual space use and functional responses in habitat selection by a large herbivore.

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Bjørneraas, Kari; Herfindal, Ivar; Solberg, Erling Johan; Sæther, Bernt-Erik; van Moorter, Bram; Rolandsen, Christer Moe

2012-01-01

Identifying factors shaping variation in resource selection is central for our understanding of the behaviour and distribution of animals. We examined summer habitat selection and space use by 108 Global Positioning System (GPS)-collared moose in Norway in relation to sex, reproductive status, habitat quality, and availability. Moose selected habitat types based on a combination of forage quality and availability of suitable habitat types. Selection of protective cover was strongest for reproducing females, likely reflecting the need to protect young. Males showed strong selection for habitat types with high quality forage, possibly due to higher energy requirements. Selection for preferred habitat types providing food and cover was a positive function of their availability within home ranges (i.e. not proportional use) indicating functional response in habitat selection. This relationship was not found for unproductive habitat types. Moreover, home ranges with high cover of unproductive habitat types were larger, and smaller home ranges contained higher proportions of the most preferred habitat type. The distribution of moose within the study area was partly related to the distribution of different habitat types. Our study shows how distribution and availability of habitat types providing cover and high-quality food shape ungulate habitat selection and space use.

Habitat loss and gain: Influence on habitat attractiveness for estuarine fish communities

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Amorim, Eva; Ramos, Sandra; Elliott, Michael; Franco, Anita; Bordalo, Adriano A.

2017-10-01

Habitat structure and complexity influence the structuring and functioning of fish communities. Habitat changes are one of the main pressures affecting estuarine systems worldwide, yet the degree and rate of change and its impact on fish communities is still poorly understood. In order to quantify historical modifications in habitat structure, an ecohydrological classification system using physiotopes, i.e. units with homogenous abiotic characteristics, was developed for the lower Lima estuary (NW Portugal). Field data, aerial imagery, historical maps and interpolation methods were used to map input variables, including bathymetry, substratum (hard/soft), sediment composition, hydrodynamics (current velocity) and vegetation coverage. Physiotopes were then mapped for the years of 1933 and 2013 and the areas lost and gained over the 80 years were quantified. The implications of changes for the benthic and demersal fish communities using the lower estuary were estimated using the attractiveness to those communities of each physiotope, while considering the main estuarine habitat functions for fish, namely spawning, nursery, feeding and refuge areas and migratory routes. The lower estuary was highly affected due to urbanisation and development and, following a port/harbour expansion, its boundary moved seaward causing an increase in total area. Modifications led to the loss of most of its sandy and saltmarsh intertidal physiotopes, which were replaced by deeper subtidal physiotopes. The most attractive physiotopes for fish (defined as the way in which they supported the fish ecological features) decreased in area while less attractive ones increased, producing an overall lower attractiveness of the studied area in 2013 compared to 1933. The implications of habitat alterations for the fish using the estuary include potential changes in the nursery carrying capacity and the functioning of the fish community. The study also highlighted the poor knowledge of the impacts of

A Modelling Framework to Assess the Effect of Pressures on River Abiotic Habitat Conditions and Biota.

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Jochem Kail

Full Text Available River biota are affected by global reach-scale pressures, but most approaches for predicting biota of rivers focus on river reach or segment scale processes and habitats. Moreover, these approaches do not consider long-term morphological changes that affect habitat conditions. In this study, a modelling framework was further developed and tested to assess the effect of pressures at different spatial scales on reach-scale habitat conditions and biota. Ecohydrological and 1D hydrodynamic models were used to predict discharge and water quality at the catchment scale and the resulting water level at the downstream end of a study reach. Long-term reach morphology was modelled using empirical regime equations, meander migration and 2D morphodynamic models. The respective flow and substrate conditions in the study reach were predicted using a 2D hydrodynamic model, and the suitability of these habitats was assessed with novel habitat models. In addition, dispersal models for fish and macroinvertebrates were developed to assess the re-colonization potential and to finally compare habitat suitability and the availability/ability of species to colonize these habitats. Applicability was tested and model performance was assessed by comparing observed and predicted conditions in the lowland Treene River in northern Germany. Technically, it was possible to link the different models, but future applications would benefit from the development of open source software for all modelling steps to enable fully automated model runs. Future research needs concern the physical modelling of long-term morphodynamics, feedback of biota (e.g., macrophytes on abiotic habitat conditions, species interactions, and empirical data on the hydraulic habitat suitability and dispersal abilities of macroinvertebrates. The modelling framework is flexible and allows for including additional models and investigating different research and management questions, e.g., in climate impact

Functional morphology of the bovid astragalus in relation to habitat: controlling phylogenetic signal in ecomorphology.

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Barr, W Andrew

2014-11-01

Bovid astragali are one of the most commonly preserved bones in the fossil record. Accordingly, astragali are an important target for studies seeking to predict the habitat preferences of fossil bovids based on bony anatomy. However, previous work has not tested functional hypotheses linking astragalar morphology with habitat while controlling for body size and phylogenetic signal. This article presents a functional framework relating the morphology of the bovid astragalus to habitat-specific locomotor ecology and tests four hypotheses emanating from this framework. Highly cursorial bovids living in structurally open habitats are hypothesized to differ from their less cursorial closed-habitat dwelling relatives in having (1) relatively short astragali to maintain rotational speed throughout the camming motion of the rotating astragalus, (2) a greater range of angular excursion at the hock, (3) relatively larger joint surface areas, and (4) a more pronounced "spline-and-groove" morphology promoting lateral joint stability. A diverse sample of 181 astragali from 50 extant species was scanned using a Next Engine laser scanner. Species were assigned to one of four habitat categories based on the published ecological literature. A series of 11 linear measurements and three joint surface areas were measured on each astragalus. A geometric mean body size proxy was used to size-correct the measurement data. Phylogenetic generalized least squares (PGLS) was used to test for differences between habitat categories while controlling for body size differences and phylogenetic signal. Statistically significant PGLS results support Hypotheses 1 and 2 (which are not mutually exclusive) as well as Hypothesis 3. No support was found for Hypothesis 4. These findings confirm that the morphology of the bovid astragalus is related to habitat-specific locomotor ecology, and that this relationship is statistically significant after controlling for body size and phylogeny. Thus, this study

Anopheline larval habitats seasonality and species distribution: a prerequisite for effective targeted larval habitats control programmes.

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Eliningaya J Kweka

Full Text Available Larval control is of paramount importance in the reduction of malaria vector abundance and subsequent disease transmission reduction. Understanding larval habitat succession and its ecology in different land use managements and cropping systems can give an insight for effective larval source management practices. This study investigated larval habitat succession and ecological parameters which influence larval abundance in malaria epidemic prone areas of western Kenya.A total of 51 aquatic habitats positive for anopheline larvae were surveyed and visited once a week for a period of 85 weeks in succession. Habitats were selected and identified. Mosquito larval species, physico-chemical parameters, habitat size, grass cover, crop cycle and distance to nearest house were recorded. Polymerase chain reaction revealed that An. gambiae s.l was the most dominant vector species comprised of An.gambiae s.s (77.60% and An.arabiensis (18.34%, the remaining 4.06% had no amplification by polymerase chain reaction. Physico-chemical parameters and habitat size significantly influenced abundance of An. gambiae s.s (P = 0.024 and An. arabiensis (P = 0.002 larvae. Further, larval species abundance was influenced by crop cycle (P≤0.001, grass cover (P≤0.001, while distance to nearest houses significantly influenced the abundance of mosquito species larvae (r = 0.920;P≤0.001. The number of predator species influenced mosquito larval abundance in different habitat types. Crop weeding significantly influenced with the abundance of An.gambiae s.l (P≤0.001 when preceded with fertilizer application. Significantly higher anopheline larval abundance was recorded in habitats in pasture compared to farmland (P = 0.002. When habitat stability and habitat types were considered, hoof print were the most productive followed by disused goldmines.These findings suggest that implementation of effective larval control programme should be targeted with larval

Impacts of Columbia River discharge on salmonid habitat: 2. Changes in shallow-water habitat

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Kukulka, Tobias; Jay, David A.

2003-09-01

This is the second part of an investigation that analyzes human alteration of shallow-water habitat (SWH) available to juvenile salmonids in the tidal Lower Columbia River. Part 2 develops a one-dimensional, subtidal river stage model that explains ˜90% of the stage variance in the tidal river. This model and the tidal model developed in part 1 [, 2003] uncouple the nonlinear interaction of river tides and river stage by referring both to external forcing by river discharge, ocean tides, and atmospheric pressure. Applying the two models, daily high-water levels were predicted for a reach from rkm-50 to rkm-90 during 1974 to 1998, the period of contemporary management. Predicted water levels were related to the bathymetry and topography to determine the changes in shallow-water habitat area (SWHA) caused by flood control dikes and altered flow management. Model results suggest that diking and a >40% reduction of peak flows have reduced SWHA by ˜62% during the crucial spring freshet period during which juvenile salmon use of SWHA is maximal. Taken individually, diking and flow cycle alteration reduced spring freshet SWHA by 52% and 29%, respectively. SWHA has been both displaced to lower elevations and modified in its character because tidal range has increased. Our models of these processes are economical for the very long simulations (seasons to centuries) needed to understand historic changes and climate impacts on SWH. Through analysis of the nonlinear processes controlling surface elevation in a tidal river, we have identified some of the mechanisms that link freshwater discharge to SWH and salmonid survival.

Ecosystem process interactions between central Chilean habitats

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Meredith Root-Bernstein

2015-01-01

Full Text Available Understanding ecosystem processes is vital for developing dynamic adaptive management of human-dominated landscapes. We focus on conservation and management of the central Chilean silvopastoral savanna habitat called “espinal”, which often occurs near matorral, a shrub habitat. Although matorral, espinal and native sclerophyllous forest are linked successionally, they are not jointly managed and conserved. Management goals in “espinal” include increasing woody cover, particularly of the dominant tree Acacia caven, improving herbaceous forage quality, and increasing soil fertility. We asked whether adjacent matorral areas contribute to espinal ecosystem processes related to the three main espinal management goals. We examined input and outcome ecosystem processes related to these goals in matorral and espinal with and without shrub understory. We found that matorral had the largest sets of inputs to ecosystem processes, and espinal with shrub understory had the largest sets of outcomes. Moreover, we found that these outcomes were broadly in the directions preferred by management goals. This supports our prediction that matorral acts as an ecosystem process bank for espinal. We recommend that management plans for landscape resilience consider espinal and matorral as a single landscape cover class that should be maintained as a dynamic mosaic. Joint management of espinal and matorral could create new management and policy opportunities.

Using Video to Communicate Scientific Findings -- Habitat Connections in Urban Streams

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Harned, D. A.; Moorman, M.; Fitzpatrick, F. A.; McMahon, G.

2011-12-01

The U.S Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) provides information about (1) water-quality conditions and how those conditions vary locally, regionally, and nationally, (2) water-quality trends, and (3) factors that affect those conditions. As part of the NAWQA Program, the Effects of Urbanization on Stream Ecosystems (EUSE) study examined the vulnerability and resilience of streams to urbanization. Completion of the EUSE study has resulted in over 20 scientific publications. Video podcasts are being used in addition to these publications to communicate the relevance of these scientific findings to more general audiences such as resource managers, educational groups, public officials, and the general public. An example of one of the podcasts is a film examining effects of urbanization on stream habitat. "Habitat Connections in Urban Streams" explores how urbanization changes some of the physical features that provide in-stream habitat and examines examples of stream restoration projects designed to improve stream form and function. The "connections" theme is emphasized, including the connection of in-stream habitats from the headwaters to the stream mouth; connections between stream habitat and the surrounding floodplains, wetlands and basin; and connections between streams and people-- resource managers, public officials, scientists, and the general public. Examples of innovative stream restoration projects in Baltimore Maryland; Milwaukee, Wisconsin; and Portland Oregon are shown with interviews of managers, engineers, scientists, and others describing the projects. The film is combined with a website with links to extended film versions of the stream-restoration project interviews. The website and films are an example of USGS efforts aimed at improving science communication to a general audience. The film is available for access from the EUSE website: http://water.usgs.gov/nawqa/urban/html/podcasts.html. Additional films are

Examining the Potential for Agricultural Benefits from Pollinator Habitat at Solar Facilities in the United States.

Science.gov (United States)

Walston, Leroy; Mishra, Shruti Khadka; Hartmann, Heidi M; Hlohowskyj, Ihor; McCall, James; Macknick, Jordan

2018-05-28

Of the many roles insects serve for ecosystem function, pollination is possibly the most important service directly linked to human well-being. However, land use changes have contributed to the decline of pollinators and their habitats. In agricultural landscapes that also support renewable energy developments such as utility-scale solar energy [USSE] facilities, opportunities may exist to conserve insect pollinators and locally restore their ecosystem services through the implementation of vegetation management approaches that aim to provide and maintain pollinator habitat at USSE facilities. As a first step towards understanding the potential agricultural benefits of solar-pollinator habitat, we identified areas of overlap between USSE facilities and surrounding pollinator-dependent crop types in the United States (U.S.). Using spatial data on solar energy developments and crop types across the U.S, and assuming a pollinator foraging distance of 1.5 km, we identified over 3,500 km2 of agricultural land near existing and planned USSE facilities that may benefit from increased pollination services through the creation of pollinator habitat at the USSE facilities. The following five pollinator-dependent crop types accounted for over 90% of the agriculture near USSE facilities, and these could benefit most from the creation of pollinator habitat at existing and planned USSE facilities: soybeans, alfalfa, cotton, almonds, and citrus. We discuss how our results may be used to understand potential agro-economic implications of solar-pollinator habitat. Our results show that ecosystem service restoration through the creation of pollinator habitat could improve the sustainability of large-scale renewable energy developments in agricultural landscapes.

Habitat specialization through germination cueing: a comparative study of herbs from forests and open habitats.

Science.gov (United States)

Ten Brink, Dirk-Jan; Hendriksma, Harmen Pieter; Bruun, Hans Henrik

2013-02-01

This study examined the adaptive association between seed germination ecology and specialization to either forest or open habitats across a range of evolutionary lineages of seed plants, in order to test the hypotheses that (1) species' specialization to open vs. shaded habitats is consistently accompanied by specialization in their regeneration niche; and (2) species are thereby adapted to utilize different windows of opportunity in time (season) and space (habitat). Seed germination response to temperature, light and stratification was tested for 17 congeneric pairs, each consisting of one forest species and one open-habitat species. A factorial design was used with temperature levels and diurnal temperature variation (10 °C constant, 15-5 °C fluctuating, 20 °C constant, 25-15 °C fluctuating), and two light levels (light and darkness) and a cold stratification treatment. The congeneric species pair design took phylogenetic dependence into account. Species from open habitats germinated better at high temperatures, whereas forest species performed equally well at low and high temperatures. Forest species tended to germinate only after a period of cold stratification that could break dormancy, while species from open habitats generally germinated without cold stratification. The empirically derived germination strategies correspond quite well with establishment opportunities for forest and open-habitat plant species in nature. Annual changes in temperature and light regime in temperate forest delimit windows of opportunity for germination and establishment. Germination strategies of forest plants are adaptations to utilize such narrow windows in time. Conversely, lack of fit between germination ecology and environment may explain why species of open habitats generally fail to establish in forests. Germination strategy should be considered an important mechanism for habitat specialization in temperate herbs to forest habitats. The findings strongly suggest that

California Condor Critical Habitat

Data.gov (United States)

California Natural Resource Agency — These Data identify (in general) the areas where critical habitat for the California Condor occur. Critical habitat for the species consists of the following 10...

Biological conservation of aquatic inland habitats: these are better days

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Ian J. Winfield

2013-08-01

Full Text Available The biodiversity of aquatic inland habitats currently faces unprecedented threats from human activities. At the same time, although much is known about the functioning of freshwater ecosystems the successful transfer of such knowledge to practical conservation has not been universal. Global awareness of aquatic conservation issues is also hampered by the fact that conditions under the water surface are largely hidden from the direct experience of most members of society. Connectivity, or lack of it, is another challenge to the conservation of freshwater habitats, while urban areas can play a perhaps unexpectedly important positive role. Freshwater habitats frequently enjoy benefits accruing from a sense of ownership or stewardship by local inhabitants, which has led to the development of conservation movements which commonly started life centred on the aquatic inland habitat itself but of which many have now matured into wider catchment-based conservation programmes. A demonstrable need for evidence-based conservation management in turn requires scientific assessments to be increasingly robust and standardised, while at the same time remaining open to the adoption of technological advances and welcoming the rapidly developing citizen science movement. There is evidence of real progress in this context and conservation scientists are now communicating their findings to environmental managers in a way and on a scale that was rarely seen a couple of decades ago. It is only in this way that scientific knowledge can be efficiently transferred to conservation planning, prioritisation and ultimately management in an increasingly scaled-up, joined-up and resource-limited world. The principle of ‘prevention is better than cure’ is particularly appropriate to most biological conservation issues in aquatic inland habitats and is inextricably linked to educating and/or nudging appropriate human behaviours. When prevention fails, some form of emergency

Headwater Stream Management Dichotomies: Local Amphibian Habitat vs. Downstream Fish Habitat

Science.gov (United States)

Jackson, C. R.

2002-12-01

Small headwater streams in mountainous areas of the Pacific Northwest often do not harbor fish populations because of low water depth and high gradients. Rather, these streams provide habitat for dense assemblages of stream-dwelling amphibians. A variety of management goals have been suggested for such streams such as encouraging large woody debris recruitment to assist in sediment trapping and valley floor formation, encouraging large woody debris recruitment to provide downstream wood when debris flows occur, providing continuous linear stream buffers within forest harvest areas to provide shade and bank stability, etc. A basic problem with analying the geomorphic or biotic benefits of any of these strategies is the lack of explicit management goals for such streams. Should managers strive to optimize downstream fish habitat, local amphibian habitat, or both? Through observational data and theoretical considerations, it will be shown that these biotic goals will lead to very different geomorphic management recommendations. For instance, woody debris greater than 60 cm diameter may assist in valley floor development, but it is likely to create subsurface channel flow of unknown value to amphibians. Trapping and retention of fine sediments within headwater streams may improve downstream spawning gravels, but degrades stream-dwelling amphibian habitat. In response to the need for descriptive information on habitat and channel morphology specific to small, non-fish-bearing streams in the Pacific Northwest, morphologies and wood frequencies in forty-two first- and second-order forested streams less than four meters wide were surveyed. Frequencies and size distributions of woody debris were compared between small streams and larger fish-bearing streams as well as between second-growth and virgin timber streams. Statistical models were developed to explore dominant factors affecting channel morphology and habitat. Findings suggest geomorphological relationships

Physiological Plasticity to Water Flow Habitat in the Damselfish, Acanthochromis polyacanthus: Linking Phenotype to Performance

Science.gov (United States)

Binning, Sandra A.; Ros, Albert F. H.; Nusbaumer, David; Roche, Dominique G.

2015-01-01

The relationships among animal form, function and performance are complex, and vary across environments. Therefore, it can be difficult to identify morphological and/or physiological traits responsible for enhancing performance in a given habitat. In fishes, differences in swimming performance across water flow gradients are related to morphological variation among and within species. However, physiological traits related to performance have been less well studied. We experimentally reared juvenile damselfish, Acanthochromis polyacanthus, under different water flow regimes to test 1) whether aspects of swimming physiology and morphology show plastic responses to water flow, 2) whether trait divergence correlates with swimming performance and 3) whether flow environment relates to performance differences observed in wild fish. We found that maximum metabolic rate, aerobic scope and blood haematocrit were higher in wave-reared fish compared to fish reared in low water flow. However, pectoral fin shape, which tends to correlate with sustained swimming performance, did not differ between rearing treatments or collection sites. Maximum metabolic rate was the best overall predictor of individual swimming performance; fin shape and fish total length were 3.3 and 3.7 times less likely than maximum metabolic rate to explain differences in critical swimming speed. Performance differences induced in fish reared in different flow environments were less pronounced than in wild fish but similar in direction. Our results suggest that exposure to water motion induces plastic physiological changes which enhance swimming performance in A. polyacanthus. Thus, functional relationships between fish morphology and performance across flow habitats should also consider differences in physiology. PMID:25807560

Linking land use change to recreational fishery valuation with a spatially explicit behavior model: A case study from Tampa Bay, FL USA

Science.gov (United States)

Drawing a link between habitat change and production and delivery of ecosystem services is a priority in coastal estuarine ecosystems. This link is needed to fully understand how human communities can influence ecosystem sustainability. Mechanistic modeling tools are highly fun...

L-Reactor Habitat Mitigation Study

International Nuclear Information System (INIS)

1988-02-01

The L-Reactor Fish and Wildlife Resource Mitigation Study was conducted to quantify the effects on habitat of the L-Reactor restart and to identify the appropriate mitigation for these impacts. The completed project evaluated in this study includes construction of a 1000 acre reactor cooling reservoir formed by damming Steel Creek. Habitat impacts identified include a loss of approximately 3,700 average annual habitat units. This report presents a mitigation plan, Plan A, to offset these habitat losses. Plan A will offset losses for all species studied, except whitetailed deer. The South Carolina Wildlife and Marine Resources Department strongly recommends creation of a game management area to provide realistic mitigation for loss of deer habitats. 10 refs., 5 figs., 3 tabs

Coastal Critical Habitat Designations

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Endangered Species Act (ESA) requires the Federal government to designate critical habitat, areas of habitat essential to the species' conservation, for ESA...

New England wildlife: management forested habitats

Science.gov (United States)

Richard M. DeGraaf; Mariko Yamasaki; William B. Leak; John W. Lanier

1992-01-01

Presents silvicultural treatments for six major cover-type groups in New England to produce stand conditions that provide habitat opportunities for a wide range of wildlife species. Includes matrices for species occurrence and utilization by forested and nonforested habitats, habitat breadth and size class, and structural habitat features for the 338 wildlife species...

Wildlife habitat considerations

Science.gov (United States)

Helen Y. Smith

2000-01-01

Fire, insects, disease, harvesting, and precommercial thinning all create mosaics on Northern Rocky Mountain landscapes. These mosaics are important for faunal habitat. Consequently, changes such as created openings or an increase in heavily stocked areas affect the water, cover, and food of forest habitats. The “no action” alternative in ecosystem management of low...

Mechanisms Affecting Population Density in Fragmented Habitat

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Lutz Tischendorf

2005-06-01

Full Text Available We conducted a factorial simulation experiment to analyze the relative importance of movement pattern, boundary-crossing probability, and mortality in habitat and matrix on population density, and its dependency on habitat fragmentation, as well as inter-patch distance. We also examined how the initial response of a species to a fragmentation event may affect our observations of population density in post-fragmentation experiments. We found that the boundary-crossing probability from habitat to matrix, which partly determines the emigration rate, is the most important determinant for population density within habitat patches. The probability of crossing a boundary from matrix to habitat had a weaker, but positive, effect on population density. Movement behavior in habitat had a stronger effect on population density than movement behavior in matrix. Habitat fragmentation and inter-patch distance may have a positive or negative effect on population density. The direction of both effects depends on two factors. First, when the boundary-crossing probability from habitat to matrix is high, population density may decline with increasing habitat fragmentation. Conversely, for species with a high matrix-to-habitat boundary-crossing probability, population density may increase with increasing habitat fragmentation. Second, the initial distribution of individuals across the landscape: we found that habitat fragmentation and inter-patch distance were positively correlated with population density when individuals were distributed across matrix and habitat at the beginning of our simulation experiments. The direction of these relationships changed to negative when individuals were initially distributed across habitat only. Our findings imply that the speed of the initial response of organisms to habitat fragmentation events may determine the direction of observed relationships between habitat fragmentation and population density. The time scale of post

Localized extinction of an arboreal desert lizard caused by habitat fragmentation

Science.gov (United States)

Munguia-Vega, Adrian; Rodriguez-Estrella, Ricardo; Shaw, William W.; Culver, Melanie

2013-01-01

We adopted a species’ perspective for predicting extinction risk in a small, endemic, and strictly scansorial lizard (Urosaurus nigricaudus), in an old (∼60 year) and highly fragmented (8% habitat remaining) agricultural landscape from the Sonoran Desert, Mexico. We genotyped 10 microsatellite loci in 280 individuals from 11 populations in fragmented and continuous habitat. Individual dispersal was restricted to less than 400 m, according to analyses of spatial autocorrelation and spatially explicit Bayesian assignment methods. Within this scale, continuous areas and narrow washes with native vegetation allowed high levels of gene flow over tens of kilometers. In the absence of the native vegetation, cleared areas and highways were identified as partial barriers. In contrast, outside the scale of dispersal, cleared areas behaved as complete barriers, and surveys corroborated the species went extinct after a few decades in all small (less than 45 ha), isolated habitat fragments. No evidence for significant loss of genetic diversity was found, but results suggested fragmentation increased the spatial scale of movements, relatedness, genetic structure, and potentially affected sex-biased dispersal. A plausible threshold of individual dispersal predicted only 23% of all fragments in the landscape were linked with migration from continuous habitat, while complete barriers isolated the majority of fragments. Our study suggested limited dispersal, coupled with an inability to use a homogeneous and hostile matrix without vegetation and shade, could result in frequent time-delayed extinctions of small ectotherms in highly fragmented desert landscapes, particularly considering an increase in the risk of overheating and a decrease in dispersal potential induced by global warming.

From Rivers to Oceans and Back: Linking Models to Encompass the Full Salmon Life Cycle

Science.gov (United States)

Danner, E.; Hendrix, N.; Martin, B.; Lindley, S. T.

2016-02-01

Pacific salmon are a promising study subject for investigating the linkages between freshwater and coastal ocean ecosystems. Salmon use a wide range of habitats throughout their life cycle as they move with water from mountain streams, mainstem rivers, estuaries, bays, and coastal oceans, with adult fish swimming back through the same migration route they took as juveniles. Conditions in one habitat can have growth and survival consequences that manifest in the following habitat, so is key that full life cycle models are used to further our understanding salmon population dynamics. Given the wide range of habitats and potential stressors, this approach requires the coordination of a multidisciplinary suite of physical and biological models, including climate, hydrologic, hydraulic, food web, circulation, bioenergetic, and ecosystem models. Here we present current approaches to linking physical and biological models that capture the foundational drivers for salmon in complex and dynamic systems.

Sound solutions for habitat monitoring

Science.gov (United States)

Mary M. Rowland; Lowell H. Suring; Christina D. Vojta

2015-01-01

For agencies and organizations to effectively manage wildlife, knowledge about the status and trend of wildlife habitat is critical. Traditional wildlife monitoring, however, has focused on populations rather than habitat, because ultimately population status drives long-term species viability. Still, habitat loss has contributed to the decline of nearly all at-risk...

Habitat use, daily activity periods, and thermal ecology of Ameiva ameiva (Squamata: Teiidae in a caatinga area of northeastern Brazil

Directory of Open Access Journals (Sweden)

Eliza M. X. Freire

2011-12-01

Full Text Available We studied the use of spatial, temporal, and thermal resources by the Neotropical lizard Ameiva ameiva during rainy and dry seasons in a caatinga (xerophilous open forests environment in northeasternBrazil. Lizards used the vegetation habitats and microhabitats in the ground, but never were seen in the rocky habitat. Adults usually used the arboreal-shrubby habitat, whereas juveniles were sighted more often in the shrubby-herbaceous habitat. Ontogenetic differences in spatial use seem to be linked to different thermal needs between age groups owing to differences in body size. Body temperatures were significantly higher in juveniles than in adults. Most teiid species have elevated body temperatures, usually above 37oC, and are active during the hottest times of day, as was observed for A. ameiva in this study. Seasonality influenced habitat use and daily activity periods of adults, but not body temperatures. We verified annual fluctuations in adult abundance, with a decline of active lizards in the dry season; this phenomenon may be related to aestivation and/or increased mortality rate during the driest months.

Odorous house ants (Tapinoma sessile as back-seat drivers of localized ant decline in urban habitats.

Directory of Open Access Journals (Sweden)

Adam Salyer

Full Text Available Invasive species and habitat disturbance threaten biodiversity worldwide by modifying ecosystem performance and displacing native organisms. Similar homogenization impacts manifest locally when urbanization forces native species to relocate or reinvade perpetually altered habitat. This study investigated correlations between ant richness and abundance in response to urbanization and the nearby presence of invasive ant species, odorous house ants (Tapinoma sessile, within its native region. Surveying localized ant composition within natural, semi-natural, and urban habitat supported efforts to determine whether T. sessile appear to be primary (drivers threats as instigators or secondary (passengers threats as inheritors of indigenous ant decline. Sampling 180 sites, evenly split between all habitats with and without T. sessile present, yielded 45 total species. Although urbanization and T. sessile presence factors were significantly linked to ant decline, their interaction correlated to the greatest reduction of total ant richness (74% and abundance (81%. Total richness appeared to decrease from 27 species to 18 when natural habitat is urbanized and from 18 species to 7 with T. sessile present in urban plots. Odorous house ant presence minimally influenced ant communities within natural and semi-natural habitat, highlighting the importance of habitat alteration and T. sessile presence interactions. Results suggest urbanization releases T. sessile from unknown constraints by decreasing ant richness and competition. Within urban environment, T. sessile are pre-adapted to quickly exploit new resources and grow to supercolony strength wherein T. sessile drive adjacent biodiversity loss. Odorous house ants act as passengers and drivers of ecological change throughout different phases of urban 'invasion'. This progression through surviving habitat alteration, exploiting new resources, thriving, and further reducing interspecific competition supports a

Indicators: Physical Habitat Complexity

Science.gov (United States)

Physical habitat complexity measures the amount and variety of all types of cove at the water’s edge in lakes. In general, dense and varied shoreline habitat is able to support more diverse communities of aquatic life.

Managing Environmental Flows for Impounded Rivers in Semi-Arid Regions- A Habitat Suitability Index (HSI) Approach for the Assessment of River Habitat for Salmonid Populations

Science.gov (United States)

Pai, H.; Sivakumaran, K.; Villamizar, S. R.; Flanagan, J.; Guo, Q.; Harmon, T. C.

2013-12-01

Balancing ecosystem health in water-scarce, agriculturally dominated river basins remains a challenge. In dry water years, maintaining conditions for restored and sustained indigenous fish populations (a frequently used indicator for ecosystem health) is particularly challenging. Competing human demands include urban and agricultural water supplies, hydropower, and flood control. In many semi-arid regions, increasing drought intensity and frequency under future climate scenarios will combine with population increases to water scarcity. The goal of this work is to better understand how reservoir releases affect fish habitat and overall river aquatic ecosystem quality. Models integrating a diverse array of physical and biological processes and system state are used to forecast the river ecosystem response to changing drivers. We propose a distributed parameter-based Habitat Suitability Index (HSI) approach for assessing fish habitat quality. Our river ecosystem HSI maps are based on a combination of the following: (1) In situ data describing stream flow and water quality conditions; (2) Spatial observations, including surveyed cross-sections, aerial imagery and digital elevation maps (DEM) of the river and its riparian corridor; and (3) Simulated spatially distributed water depths, flow velocities, and temperatures estimated from 1D and 2D river flow and temperature models (HEC-RAS and CE-QUAL-W2, respectively). With respect to (2), image processing schemes are used to classify and map key habitat features, namely riparian edge and shallow underwater vegetation. HSI maps can be modified temporally to address specific life cycle requirements of indicator fish species. Results are presented for several reaches associated with the San Joaquin River Restoration Project, focusing on several components of the Chinook salmon life cycle. HSI maps and interpretations are presented in the context of a range of prescribed reservoir release hydrographs linked to California water

Mapping the Relative Probability of Common Toad Occurrence in Terrestrial Lowland Farm Habitat in the United Kingdom.

Directory of Open Access Journals (Sweden)

Rosie D Salazar

Full Text Available The common toad (Bufo bufo is of increasing conservation concern in the United Kingdom (UK due to dramatic population declines occurring in the past century. Many of these population declines coincided with reductions in both terrestrial and aquatic habitat availability and quality and have been primarily attributed to the effect of agricultural land conversion (of natural and semi-natural habitats to arable and pasture fields and pond drainage. However, there is little evidence available to link habitat availability with common toad population declines, especially when examined at a broad landscape scale. Assessing such patterns of population declines at the landscape scale, for instance, require an understanding of how this species uses terrestrial habitat.We intensively studied the terrestrial resource selection of a large population of common toads in Oxfordshire, England, UK. Adult common toads were fitted with passive integrated transponder (PIT tags to allow detection in the terrestrial environment using a portable PIT antenna once toads left the pond and before going into hibernation (April/May-October 2012 and 2013. We developed a population-level resource selection function (RSF to assess the relative probability of toad occurrence in the terrestrial environment by collecting location data for 90 recaptured toads.The predicted relative probability of toad occurrence for this population was greatest in wooded habitat near to water bodies; relative probability of occurrence declined dramatically > 50 m from these habitats. Toads also tended to select habitat near to their breeding pond and toad occurrence was negatively related to urban environments.

Should I stay or should I go? A habitat-dependent dispersal kernel improves prediction of movement.

Directory of Open Access Journals (Sweden)

Fabrice Vinatier

Full Text Available The analysis of animal movement within different landscapes may increase our understanding of how landscape features affect the perceptual range of animals. Perceptual range is linked to movement probability of an animal via a dispersal kernel, the latter being generally considered as spatially invariant but could be spatially affected. We hypothesize that spatial plasticity of an animal's dispersal kernel could greatly modify its distribution in time and space. After radio tracking the movements of walking insects (Cosmopolites sordidus in banana plantations, we considered the movements of individuals as states of a Markov chain whose transition probabilities depended on the habitat characteristics of current and target locations. Combining a likelihood procedure and pattern-oriented modelling, we tested the hypothesis that dispersal kernel depended on habitat features. Our results were consistent with the concept that animal dispersal kernel depends on habitat features. Recognizing the plasticity of animal movement probabilities will provide insight into landscape-level ecological processes.

Should I stay or should I go? A habitat-dependent dispersal kernel improves prediction of movement.

Science.gov (United States)

Vinatier, Fabrice; Lescourret, Françoise; Duyck, Pierre-François; Martin, Olivier; Senoussi, Rachid; Tixier, Philippe

2011-01-01

The analysis of animal movement within different landscapes may increase our understanding of how landscape features affect the perceptual range of animals. Perceptual range is linked to movement probability of an animal via a dispersal kernel, the latter being generally considered as spatially invariant but could be spatially affected. We hypothesize that spatial plasticity of an animal's dispersal kernel could greatly modify its distribution in time and space. After radio tracking the movements of walking insects (Cosmopolites sordidus) in banana plantations, we considered the movements of individuals as states of a Markov chain whose transition probabilities depended on the habitat characteristics of current and target locations. Combining a likelihood procedure and pattern-oriented modelling, we tested the hypothesis that dispersal kernel depended on habitat features. Our results were consistent with the concept that animal dispersal kernel depends on habitat features. Recognizing the plasticity of animal movement probabilities will provide insight into landscape-level ecological processes.

3.10. Habitat restoration and creation

OpenAIRE

2016-01-01

1.12.1 Terrestrial habitat Based on the collated evidence, what is the current assessment of the effectiveness of interventions for terrestrial habitat restoration and creation? Beneficial ● Replant vegetation Likely to be beneficial ● Clear vegetation● Create artificial hibernacula or aestivation sites● Create refuges● Restore habitat connectivity Unknown effectiveness (limited evidence) ● Change mowing regime No evidence found (no assessment) ● Create habitat connectivity Beneficial Repla...

Habitat Heterogeneity Variably Influences Habitat Selection by Wild Herbivores in a Semi-Arid Tropical Savanna Ecosystem.

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Victor K Muposhi

Full Text Available An understanding of the habitat selection patterns by wild herbivores is critical for adaptive management, particularly towards ecosystem management and wildlife conservation in semi arid savanna ecosystems. We tested the following predictions: (i surface water availability, habitat quality and human presence have a strong influence on the spatial distribution of wild herbivores in the dry season, (ii habitat suitability for large herbivores would be higher compared to medium-sized herbivores in the dry season, and (iii spatial extent of suitable habitats for wild herbivores will be different between years, i.e., 2006 and 2010, in Matetsi Safari Area, Zimbabwe. MaxEnt modeling was done to determine the habitat suitability of large herbivores and medium-sized herbivores. MaxEnt modeling of habitat suitability for large herbivores using the environmental variables was successful for the selected species in 2006 and 2010, except for elephant (Loxodonta africana for the year 2010. Overall, large herbivores probability of occurrence was mostly influenced by distance from rivers. Distance from roads influenced much of the variability in the probability of occurrence of medium-sized herbivores. The overall predicted area for large and medium-sized herbivores was not different. Large herbivores may not necessarily utilize larger habitat patches over medium-sized herbivores due to the habitat homogenizing effect of water provisioning. Effect of surface water availability, proximity to riverine ecosystems and roads on habitat suitability of large and medium-sized herbivores in the dry season was highly variable thus could change from one year to another. We recommend adaptive management initiatives aimed at ensuring dynamic water supply in protected areas through temporal closure and or opening of water points to promote heterogeneity of wildlife habitats.

Dam operations may improve aquatic habitat and offset negative effects of climate change.

Science.gov (United States)

Benjankar, Rohan; Tonina, Daniele; McKean, James A; Sohrabi, Mohammad M; Chen, Quiwen; Vidergar, Dmitri

2018-05-01

Dam operation impacts on stream hydraulics and ecological processes are well documented, but their effect depends on geographical regions and varies spatially and temporally. Many studies have quantified their effects on aquatic ecosystem based mostly on flow hydraulics overlooking stream water temperature and climatic conditions. Here, we used an integrated modeling framework, an ecohydraulics virtual watershed, that links catchment hydrology, hydraulics, stream water temperature and aquatic habitat models to test the hypothesis that reservoir management may help to mitigate some impacts caused by climate change on downstream flows and temperature. To address this hypothesis we applied the model to analyze the impact of reservoir operation (regulated flows) on Bull Trout, a cold water obligate salmonid, habitat, against unregulated flows for dry, average, and wet climatic conditions in the South Fork Boise River (SFBR), Idaho, USA. Copyright © 2018 Elsevier Ltd. All rights reserved.

Natural Propagation and Habitat Improvement, Volume I, Oregon, Supplement C, White River Habitat Inventory, 1983 Annual Report.

Energy Technology Data Exchange (ETDEWEB)

Heller, David

1984-04-01

More than 130 miles of stream fish habitat was inventoried and evaluated on the Mt. Hood National Forest during the first year of this multi-year project. First year tasks included field inventory and evaluation of habitat conditions on the White River and tributary streams thought to have the highest potential for supporting anadromous fish populations. All streams inventoried were located on the Mt. Hood National Forest. The surveyed area appears to contain most of the high quality anadromous fish habitat in the drainage. Habitat conditions appear suitable for steelhead, coho, and chinook salmon, and possibly sockeye. One hundred and twenty-four miles of potential anadromous fish habitat were identifed in the survey. Currently, 32 miles of this habitat would be readily accessible to anadromous fish. An additional 72 miles of habitat could be accessed with only minor passage improvement work. About 20 miles of habitat, however, will require major investment to provide fish passage. Three large lakes (Boulder, 14 acres; Badger, 45 acres; Clear, 550 acres) appear to be well-suited for rearing anadromous fish, although passage enhancement would be needed before self-sustaining runs could be established in any of the lakes.

The Relationships between Morphological Characteristics and Foraging Behavior in Four Selected Species of Shorebirds and Water Birds Utilizing Tropical Mudflats

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Nor Atiqah Norazlimi

2015-01-01

Full Text Available A study was conducted to investigate the relationship between the physical morphology of shorebirds and water birds (i.e., Lesser adjutant (Leptoptilos javanicus, Common redshank (Tringa totanus, Whimbrel (Numenius phaeopus, and Little heron (Butorides striata and their foraging behavior in the mudflats area of Selangor, Peninsular Malaysia, from August 2013 to July 2014 by using direct observation techniques (using binoculars and a video recorder. The actively foraging bird species were watched, and their foraging activities were recorded for at least 30 seconds for up to a maximum of five minutes. A Spearman Rank Correlation highlighted a significant relationship between bill size and foraging time (R=0.443, p<0.05, bill size and prey size (R=-0.052, p<0.05, bill size and probing depth (R=0.42, p=0.003, and leg length and water/mud depth (R=0.706, p<0.005. A Kruskal-Wallis Analysis showed a significant difference between average estimates of real probing depth of the birds (mm and species (H=15.96, p=0.0012. Three foraging techniques were recorded: pause-travel, visual-feeding, and tactile-hunting. Thus, morphological characteristics of bird do influence their foraging behavior and strategies used when foraging.

Anthropogenic areas as incidental substitutes for original habitat.

Science.gov (United States)

Martínez-Abraín, Alejandro; Jiménez, Juan

2016-06-01

One speaks of ecological substitutes when an introduced species performs, to some extent, the ecosystem function of an extirpated native species. We suggest that a similar case exists for habitats. Species evolve within ecosystems, but habitats can be destroyed or modified by natural and human-made causes. Sometimes habitat alteration forces animals to move to or remain in a suboptimal habitat type. In that case, the habitat is considered a refuge, and the species is called a refugee. Typically refugee species have lower population growth rates than in their original habitats. Human action may lead to the unintended generation of artificial or semiartificial habitat types that functionally resemble the essential features of the original habitat and thus allow a population growth rate of the same magnitude or higher than in the original habitat. We call such areas substitution habitats and define them as human-made habitats within the focal species range that by chance are partial substitutes for the species' original habitat. We call species occupying a substitution habitat adopted species. These are 2 new terms in conservation biology. Examples of substitution habitats are dams for European otters, wheat and rice fields for many steppeland and aquatic birds, and urban areas for storks, falcons, and swifts. Although substitution habitats can bring about increased resilience against the agents of global change, the conservation of original habitat types remains a conservation priority. © 2016 Society for Conservation Biology.

Ecology and conservation of the endemic lizard Tropidurus hygomi in “restinga” habitats of the north coast of Bahia state, Brazil

Directory of Open Access Journals (Sweden)

Karina Vieira Martins

2010-12-01

Full Text Available “Restingas” are herbaceous/ shrubby coastal sand-dune habitats that cover great areas of Brazil, particularly along the Bahia state coast. The restingas are disturbed and are under strong pressure, mainly in northeastern Brazil. Fragmentation of the landscape and habitat loss within natural ecosystems are the factors which are mainly responsible for reduction of species diversity by extinction events. The goal of thepresent study was elucidate whether the conservation status of restinga habitats on the northern coast of Bahia state was interfering with microhabitat use by the endemic lizard Tropidurus hygomi. The results showed that the use of microhabitat resources by T. hygomi did not have any signifi cant differences in the four areas we chose for study. However, diverse factors of degradation were found to contribute indirectly to its habitat loss. The T. hygomi lizard is a generalist in its use of restinga microhabitats, and probably due the endemic condition, its conservation status is linked directly to conservation of the restinga habitats on the northern coast of Bahia state.

Species effects on ecosystem processes are modified by faunal responses to habitat composition.

Science.gov (United States)

Bulling, Mark T; Solan, Martin; Dyson, Kirstie E; Hernandez-Milian, Gema; Luque, Patricia; Pierce, Graham J; Raffaelli, Dave; Paterson, David M; White, Piran C L

2008-12-01

Heterogeneity is a well-recognized feature of natural environments, and the spatial distribution and movement of individual species is primarily driven by resource requirements. In laboratory experiments designed to explore how different species drive ecosystem processes, such as nutrient release, habitat heterogeneity is often seen as something which must be rigorously controlled for. Most small experimental systems are therefore spatially homogeneous, and the link between environmental heterogeneity and its effects on the redistribution of individuals and species, and on ecosystem processes, has not been fully explored. In this paper, we used a mesocosm system to investigate the relationship between habitat composition, species movement and sediment nutrient release for each of four functionally contrasting species of marine benthic invertebrate macrofauna. For each species, various habitat configurations were generated by selectively enriching patches of sediment with macroalgae, a natural source of spatial variability in intertidal mudflats. We found that the direction and extent of faunal movement between patches differs with species identity, density and habitat composition. Combinations of these factors lead to concomitant changes in nutrient release, such that habitat composition effects are modified by species identity (in the case of NH4-N) and by species density (in the case of PO4-P). It is clear that failure to accommodate natural patterns of spatial heterogeneity in such studies may result in an incomplete understanding of system behaviour. This will be particularly important for future experiments designed to explore the effects of species richness on ecosystem processes, where the complex interactions reported here for single species may be compounded when species are brought together in multi-species combinations.

Predicting habitat distribution to conserve seagrass threatened by sea level rise

Science.gov (United States)

Saunders, M. I.; Baldock, T.; Brown, C. J.; Callaghan, D. P.; Golshani, A.; Hamylton, S.; Hoegh-guldberg, O.; Leon, J. X.; Lovelock, C. E.; Lyons, M. B.; O'Brien, K.; Mumby, P.; Phinn, S. R.; Roelfsema, C. M.

2013-12-01

Sea level rise (SLR) over the 21st century will cause significant redistribution of valuable coastal habitats. Seagrasses form extensive and highly productive meadows in shallow coastal seas support high biodiversity, including economically valuable and threatened species. Predictive habitat models can inform local management actions that will be required to conserve seagrass faced with multiple stressors. We developed novel modelling approaches, based on extensive field data sets, to examine the effects of sea level rise and other stressors on two representative seagrass habitats in Australia. First, we modelled interactive effects of SLR, water clarity and adjacent land use on estuarine seagrass meadows in Moreton Bay, Southeast Queensland. The extent of suitable seagrass habitat was predicted to decline by 17% by 2100 due to SLR alone, but losses were predicted to be significantly reduced through improvements in water quality (Fig 1a) and by allowing space for seagrass migration with inundation. The rate of sedimentation in seagrass strongly affected the area of suitable habitat for seagrass in sea level rise scenarios (Fig 1b). Further research to understand spatial, temporal and environmental variability of sediment accretion in seagrass is required. Second, we modelled changes in wave energy distribution due to predicted SLR in a linked coral reef and seagrass ecosystem at Lizard Island, Great Barrier Reef. Scenarios where the water depth over the coral reef deepened due to SLR and minimal reef accretion, resulted in larger waves propagating shoreward, changing the existing hydrodynamic conditions sufficiently to reduce area of suitable habitat for seagrass. In a scenario where accretion of the coral reef was severely compromised (e.g. warming, acidification, overfishing), the probability of the presence of seagrass declined significantly. Management to maintain coral health will therefore also benefit seagrasses subject to SLR in reef environments. Further

Habitat Suitability Index Models: Yellow-headed blackbird

Science.gov (United States)

Schroeder, Richard L.

1982-01-01

Habitat preferences of the yellow-headed blackbird (Xanthocephalus xanthocephalus) are described in this publication. It is one of a series of Habitat Suitability Index (HSI) models and was developed through an analysis of available infomration on the species-habitat requirements of the species. Habitat use information is presented in a review of the literature, followed by the development of an HSI model, designed for use in impact assessment and habitat management activities.

Habitat selection and risk of predation: re-colonization by lynx had limited impact on habitat selection by roe deer.

Directory of Open Access Journals (Sweden)

Gustaf Samelius

Full Text Available Risk of predation is an evolutionary force that affects behaviors of virtually all animals. In this study, we examined how habitat selection by roe deer was affected by risk of predation by Eurasian lynx - the main predator of roe deer in Scandinavia. Specifically, we compared how habitat selection by roe deer varied (1 before and after lynx re-established in the study area and (2 in relation to habitat-specific risk of predation by lynx. All analyses were conducted at the spatial and temporal scales of home ranges and seasons. We did not find any evidence that roe deer avoided habitats in which the risk of predation by lynx was greatest and information-theoretic model selection showed that re-colonization by lynx had limited impact on habitat selection by roe deer despite lynx predation causing 65% of known mortalities after lynx re-colonized the area. Instead we found that habitat selection decreased when habitat availability increased for 2 of 5 habitat types (a pattern referred to as functional response in habitat selection. Limited impact of re-colonization by lynx on habitat selection by roe deer in this study differs from elk in North America altering both daily and seasonal patterns in habitat selection at the spatial scales of habitat patches and home ranges when wolves were reintroduced to Yellowstone National Park. Our study thus provides further evidence of the complexity by which animals respond to risk of predation and suggest that it may vary between ecosystems and predator-prey constellations.

Habitat selection and risk of predation: re-colonization by lynx had limited impact on habitat selection by roe deer.

Science.gov (United States)

Samelius, Gustaf; Andrén, Henrik; Kjellander, Petter; Liberg, Olof

2013-01-01

Risk of predation is an evolutionary force that affects behaviors of virtually all animals. In this study, we examined how habitat selection by roe deer was affected by risk of predation by Eurasian lynx - the main predator of roe deer in Scandinavia. Specifically, we compared how habitat selection by roe deer varied (1) before and after lynx re-established in the study area and (2) in relation to habitat-specific risk of predation by lynx. All analyses were conducted at the spatial and temporal scales of home ranges and seasons. We did not find any evidence that roe deer avoided habitats in which the risk of predation by lynx was greatest and information-theoretic model selection showed that re-colonization by lynx had limited impact on habitat selection by roe deer despite lynx predation causing 65% of known mortalities after lynx re-colonized the area. Instead we found that habitat selection decreased when habitat availability increased for 2 of 5 habitat types (a pattern referred to as functional response in habitat selection). Limited impact of re-colonization by lynx on habitat selection by roe deer in this study differs from elk in North America altering both daily and seasonal patterns in habitat selection at the spatial scales of habitat patches and home ranges when wolves were reintroduced to Yellowstone National Park. Our study thus provides further evidence of the complexity by which animals respond to risk of predation and suggest that it may vary between ecosystems and predator-prey constellations.

Habitat Evaluation Procedures (HEP) Report : Hellsgate Project, 1999-2000 Technical Report.

Energy Technology Data Exchange (ETDEWEB)

Berger, Matthew

2000-05-01

A Habitat Evaluation Procedure (HEP) study was conducted on lands acquired and/or managed (4,568 acres total) by the Hellsgate Big Game Winter Range Wildlife Mitigation Project (Hellsgate project) to mitigate some of the losses associated with the original construction and operation of Grand Coulee Dam and inundation of habitats behind the dams. Three separate properties, totaling 2,224 acres were purchased in 1998. One property composed of two separate parcels, mostly grassland lies southeast of the town of Nespelem in Okanogan County (770 acres) and was formerly called the Hinman property. The former Hinman property lies within an area the Tribes have set aside for the protection and preservation of the sharp-tailed grouse (Agency Butte unit). This special management area minus the Hinman acquisition contains 2,388 acres in a long-term lease with the Tribes. The second property lies just south of the Silver Creek turnoff (Ferry County) and is bisected by the Hellsgate Road (part of the Friedlander unit). This parcel contains 60 acres of riparian and conifer forest cover. The third property (now named the Sand Hills unit) acquired for mitigation (1,394 acres) lies within the Hellsgate Reserve in Ferry County. This new acquisition links two existing mitigation parcels (the old Sand Hills parcels and the Lundstrum Flat parcel, all former Kuehne purchases) together forming one large unit. HEP team members included individuals from the Colville Confederated Tribes Fish and Wildlife Department (CTCR), Washington Department of Fish and Wildlife (WDFW), and Bureau of Land Management (BLM). The HEP team conducted a baseline habitat survey using the following HEP species models: mule deer (Odocoileus hemionus), mink (Mustela vison), downy woodpecker (Picoides pubescens), bobcat (Lynx rufus), yellow warbler (Dendroica petechia), and sharp-tailed grouse (Tympanuchus phasianellus columbianus). HEP analysis and results are discussed within the body of the text. The cover types

Habitat Suitability Index Models: Red-winged blackbird

Science.gov (United States)

Short, Henry L.

1985-01-01

A review and synthesis of existing information were used to develop a Habitat Suitability Index (HSI) model for the red-winged blackbird (Agelaius phoeniceus L.). The model consolidates habitat use information into a framework appropriate for field application, and is scaled to produce an index between 0.0 (unsuitable habitat) to 1.0 (optimum habitat). HSI models are designed to be used with Habitat Evaluation Procedures previously developed by the U.S. Fish and Wildlife Service.

Asotin Creek instream habitat alteration projects : habitat evaluation, adult and juvenile habitat utilization and water temperature monitoring : 2001 progress report

International Nuclear Information System (INIS)

Bumgarner, Joseph D.

2002-01-01

Asotin Creek originates from a network of deeply incised streams on the slopes of the Blue Mountains of southeastern Washington. The watershed drains an area of 322 square miles that provides a mean annual flow of 74 cfs. The geomorphology of the watershed exerts a strong influence on biologic conditions for fish within the stream. Historic and contemporary land-use practices have had a profound impact on the kind, abundance, and distribution of anadromous salmonids in the watershed. Fish habitat in Asotin Creek and other local streams has been affected by agricultural development, grazing, tilling practices, logging, recreational activities and implementation of flood control structures (Neilson 1950). The Asotin Creek Model Watershed Master Plan was completed in 1994. The plan was developed by a landowner steering committee for the Asotin County Conservation District (ACCD), with technical support from various Federal, State and local entities. Actions identified within the plan to improve the Asotin Creek ecosystem fall into four main categories: (1) Stream and Riparian, (2) Forestland, (3) Rangeland, and (4) Cropland. Specific actions to be carried out within the stream and in the riparian area to improve fish habitat were: (1) create more pools, (2) increase the amount of large organic debris (LOD), (3) increase the riparian buffer zone through tree planting, and (4) increase fencing to limit livestock access. All of these actions, in combination with other activities identified in the Plan, are intended to stabilize the river channel, reduce sediment input, increase the amount of available fish habitat (adult and juvenile) and protect private property. Evaluation work described within this report was to document the success or failure of the program regarding the first two items listed (increasing pools and LOD). Beginning in 1996, the ACCD, with cooperation from local landowners and funding from Bonneville Power Administration began constructing instream

Resource selection by the California condor (Gymnogyps californianus relative to terrestrial-based habitats and meteorological conditions.

Directory of Open Access Journals (Sweden)

James W Rivers

Full Text Available Condors and vultures are distinct from most other terrestrial birds because they use extensive soaring flight for their daily movements. Therefore, assessing resource selection by these avian scavengers requires quantifying the availability of terrestrial-based habitats, as well as meteorological variables that influence atmospheric conditions necessary for soaring. In this study, we undertook the first quantitative assessment of habitat- and meteorological-based resource selection in the endangered California condor (Gymnogyps californianus within its California range and across the annual cycle. We found that condor use of terrestrial areas did not change markedly within the annual cycle, and that condor use was greatest for habitats where food resources and potential predators could be detected and where terrain was amenable for taking off from the ground in flight (e.g., sparse habitats, coastal areas. Condors originating from different release sites differed in their use of habitat, but this was likely due in part to variation in habitats surrounding release sites. Meteorological conditions were linked to condor use of ecological subregions, with thermal height, thermal velocity, and wind speed having both positive (selection and negative (avoidance effects on condor use in different areas. We found little evidence of systematic effects between individual characteristics (i.e., sex, age, breeding status or components of the species management program (i.e., release site, rearing method relative to meteorological conditions. Our findings indicate that habitat type and meteorological conditions can interact in complex ways to influence condor resource selection across landscapes, which is noteworthy given the extent of anthropogenic stressors that may impact condor populations (e.g., lead poisoning, wind energy development. Additional studies will be valuable to assess small-scale condor movements in light of these stressors to help minimize

Testing projected wild bee distributions in agricultural habitats: predictive power depends on species traits and habitat type.

Science.gov (United States)

Marshall, Leon; Carvalheiro, Luísa G; Aguirre-Gutiérrez, Jesús; Bos, Merijn; de Groot, G Arjen; Kleijn, David; Potts, Simon G; Reemer, Menno; Roberts, Stuart; Scheper, Jeroen; Biesmeijer, Jacobus C

2015-10-01

Species distribution models (SDM) are increasingly used to understand the factors that regulate variation in biodiversity patterns and to help plan conservation strategies. However, these models are rarely validated with independently collected data and it is unclear whether SDM performance is maintained across distinct habitats and for species with different functional traits. Highly mobile species, such as bees, can be particularly challenging to model. Here, we use independent sets of occurrence data collected systematically in several agricultural habitats to test how the predictive performance of SDMs for wild bee species depends on species traits, habitat type, and sampling technique. We used a species distribution modeling approach parametrized for the Netherlands, with presence records from 1990 to 2010 for 193 Dutch wild bees. For each species, we built a Maxent model based on 13 climate and landscape variables. We tested the predictive performance of the SDMs with independent datasets collected from orchards and arable fields across the Netherlands from 2010 to 2013, using transect surveys or pan traps. Model predictive performance depended on species traits and habitat type. Occurrence of bee species specialized in habitat and diet was better predicted than generalist bees. Predictions of habitat suitability were also more precise for habitats that are temporally more stable (orchards) than for habitats that suffer regular alterations (arable), particularly for small, solitary bees. As a conservation tool, SDMs are best suited to modeling rarer, specialist species than more generalist and will work best in long-term stable habitats. The variability of complex, short-term habitats is difficult to capture in such models and historical land use generally has low thematic resolution. To improve SDMs' usefulness, models require explanatory variables and collection data that include detailed landscape characteristics, for example, variability of crops and

Moving Targets and Biodiversity Offsets for Endangered Species Habitat: Is Lesser Prairie Chicken Habitat a Stock or Flow?

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Todd K. BenDor

2014-03-01

Full Text Available The US Fish and Wildlife Service will make an Endangered Species Act listing decision for the lesser prairie chicken (Tympanuchus pallidicinctus; “LPC” in March 2014. Based on the findings of a single, Uzbek antelope study, conservation plans put forth for the LPC propose to modify and re-position habitat in the landscape through a series of temporary preservation/restoration efforts. We argue that for certain species, including the LPC, dynamic habitat offsets represent a dangerous re-interpretation of habitat provision and recovery programs, which have nearly-universally viewed ecosystem offsets (habitat, wetlands, streams, etc. as “stocks” that accumulate characteristics over time. Any effort to create a program of temporary, moving habitat offsets must consider species’ (1 life history characteristics, (2 behavioral tendencies (e.g., avoidance of impacted areas, nesting/breeding site fidelity, and (3 habitat restoration characteristics, including long temporal lags in reoccupation. If misapplied, species recovery programs using temporary, moving habitat risk further population declines.

A meta-analysis of lesser prairie-chicken nesting and brood-rearing habitats: implications for habitat management

Science.gov (United States)

Hagen, Christian A.; Grisham, Blake A.; Boal, Clint W.; Haukos, David A.

2013-01-01

The distribution and range of lesser prairie-chicken (Tympanuchus pallidicinctus) has been reduced by >90% since European settlement of the Great Plains of North America. Currently, lesser prairie-chickens occupy 3 general vegetation communities: sand sagebrush (Artemisia filifolia), sand shinnery oak (Quercus havardii), and mixed-grass prairies juxtaposed with Conservation Reserve Program grasslands. As a candidate for protection under the Endangered Species Act, there is a need for a synthesis that characterizes habitat structure rangewide. Thus, we conducted a meta-analysis of vegetation characteristics at nest sites and brood habitats to determine whether there was an overall effect (Hedges' d) of habitat selection and to estimate average (95% CI) habitat characteristics at use sites. We estimated effect sizes (di) from the difference between use (nests and brood sites) and random sampling sites for each study (n = 14), and derived an overall effect size (d++). There was a general effect for habitat selection as evidenced by low levels of variation in effect sizes across studies and regions. There was a small to medium effect (d++) = 0.20-0.82) of selection for greater vertical structure (visual obstruction) by nesting females in both vegetation communities, and selection against bare ground (d++ = 0.20-0.58). Females with broods exhibited less selectivity for habitat components except for vertical structure. The variation of d++ was greater during nesting than brooding periods, signifying a seasonal shift in habitat use, and perhaps a greater range of tolerance for brood-rearing habitat. The overall estimates of vegetation cover were consistent with those provided in management guidelines for the species.

Wildlife Habitat Evaluation Handbook.

Science.gov (United States)

Neilson, Edward L., Jr.; Benson, Delwin E.

The National 4-H Wildlife Invitational is a competitive event to teach youth about the fundamentals of wildlife management. Youth learn that management for wildlife means management of wildlife habitat and providing for the needs of wildlife. This handbook provides information about wildlife habitat management concepts in both urban and rural…

Effects of Changes in Lugu Lake Water Quality on Schizothorax Yunnansis Ecological Habitat Based on HABITAT Model

Science.gov (United States)

Huang, Wei; Mynnet, Arthur

Schizothorax Yunnansis is an unique fish species only existing in Lugu Lake, which is located in the southwestern China. The simulation and research on Schizothorax Yunnansis habitat environment have a vital significance to protect this rare fish. With the development of the tourism industry, there bring more pressure on the environmental protection. The living environment of Schizothorax Yunnansis is destroyed seriously because the water quality is suffering the sustaining pollution of domestic sewage from the peripheral villages. This paper analyzes the relationship between water quality change and Schizothorax Yunnansis ecological habitat and evalutes Schizothorax Yunnansis's ecological habitat impact based on HABITAT model. The results show that when the TP concentration in Lugu Lake does not exceed Schizothorax Yunnansis's survival threshold, Schizothorax Yunnansis can get more nutrients and the suitable habitat area for itself is increased. Conversely, it can lead to TP toxicity in the Schizothorax Yunnansis and even death. Therefore, unsuitable habitat area for Schizothorax Yunnansis is increased. It can be seen from the results that HABITAT model can assist in ecological impact assessment studies by translating results of hydrological, water quality models into effects on the natural environment and human society.

Two fern species new to New Hampshire, with comments on the generation of calcareous-like habitat by base-poor rocks

Science.gov (United States)

Scott W. Bailey

2013-01-01

Incidental to other field investigations, I happened upon small populations of two fern species not previously reported from New Hampshire: Pellaea atropurpurea (L.) Link and Dryopteris filix-mas (L.) Schott. Both species are typically associated with calcareous habitats, although limestone and marble are nearly absent from New...

Habitat segregation in fish assemblages

OpenAIRE

Ibbotson, A.T.

1990-01-01

The segregation of habitats of fish assemblages found in the chalk streams and rivers within the Wessex, South West and Southern Water Authority boundaries in southern England have been examined. Habitat segregation is the most frequent type of resource partitioning in natural communities. The habitat of individual fish species will be defined in order to determine the following: (1) the requirements of each species in terms of depth, current velocity, substrate, cover etc.; (2) identify the ...

Rates of mass gain and energy deposition in red knot on their final spring staging site is both time- and condition-dependent

NARCIS (Netherlands)

Atkinson, Philip W.; Baker, Allan J.; Bennett, Karen A.; Clark, Nigel A.; Clark, Jacquie A.; Cole, Kimberly B.; Dekinga, Anne; Dey, Amanda; Gillings, Simon; Gonzalez, Patricia M.; Kalasz, Kevin; Minton, Clive D. T.; Newton, Jason; Niles, Lawrence J.; Piersma, Theunis; Robinson, Robert A.; Sitters, Humphrey P.; Stevens, Phil

1. Millions of shorebirds migrate each year through a small number of highly productive staging areas where they often conflict with fisheries interests. Delaware Bay, USA, is a major shorebird stopover site where, in spring, many thousands of shorebirds undergo rapid mass gain by feeding on the

Critical Habitat :: NOAA Fisheries

Science.gov (United States)

occupied by the species at the time of listing, if they contain physical or biological features essential essential for conservation. Critical Habitat Maps NOTE: The critical habitat maps provided here are for Data Leatherback Turtle (U.S. West Coast) » Biological Report » Economic Report 2012 77 FR 4170 Go to

Riparian Habitat - Product of 2 riparian habitat workshops

Data.gov (United States)

California Natural Resource Agency — In two riparian habitat workshops held between 2001 and 2002, scientists and managers identified the need for determining the scope of a consistent and acceptable...

Estimating habitat carrying capacity for migrating and wintering waterfowl: Considerations, pitfalls and improvements

Science.gov (United States)

Williams, Christopher; Dugger, Bruce D.; Brasher, Michael G.; Coluccy, John M.; Cramer, Dane M.; Eadie, John M.; Gray, Matthew J.; Hagy, Heath M.; Livolsi, Mark; McWilliams, Scott R.; Petrie, Matthew; Soulliere, Gregory J.; Tirpak, John M.; Webb, Elisabeth B.

2014-01-01

Population-based habitat conservation planning for migrating and wintering waterfowl in North America is carried out by habitat Joint Venture (JV) initiatives and is based on the premise that food can limit demography (i.e. food limitation hypothesis). Consequently, planners use bioenergetic models to estimate food (energy) availability and population-level energy demands at appropriate spatial and temporal scales, and translate these values into regional habitat objectives. While simple in principle, there are both empirical and theoretical challenges associated with calculating energy supply and demand including: 1) estimating food availability, 2) estimating the energy content of specific foods, 3) extrapolating site-specific estimates of food availability to landscapes for focal species, 4) applicability of estimates from a single species to other species, 5) estimating resting metabolic rate, 6) estimating cost of daily behaviours, and 7) estimating costs of thermoregulation or tissue synthesis. Most models being used are daily ration models (DRMs) whose set of simplifying assumptions are well established and whose use is widely accepted and feasible given the empirical data available to populate such models. However, DRMs do not link habitat objectives to metrics of ultimate ecological importance such as individual body condition or survival, and largely only consider food-producing habitats. Agent-based models (ABMs) provide a possible alternative for creating more biologically realistic models under some conditions; however, ABMs require different types of empirical inputs, many of which have yet to be estimated for key North American waterfowl. Decisions about how JVs can best proceed with habitat conservation would benefit from the use of sensitivity analyses that could identify the empirical and theoretical uncertainties that have the greatest influence on efforts to estimate habitat carrying capacity. Development of ABMs at

NEPR Benthic Habitat Map 2015

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This benthic habitat map was created from a semi-automated habitat mapping process, using a combination of bathymetry, satellite imagery, aerial imagery and...

ASSESSING THE CONSERVATION STATUS OF EUROPEAN UNION HABITATS – RESULTS OF THE COMMUNITY REPORT WITH A CASE STUDY OF THE GERMAN NATIONAL REPORT

Directory of Open Access Journals (Sweden)

Z. SIPKOVA

2010-04-01

Full Text Available The EU Habitats Directive requires all member states to report every 6 years on the implementation of the Directive. The report covering the period 2000 – 2006 included for the first time an assessment of the conservation status of the habitats and species listed on annexes I, II, IV & V of the Habitats Directive following an agreed format. Based on national reports submitted from member States the European Topic Centre on Biological Diversity has prepared assessments for each biogeographical region at EU-level. The majority of the habitats of Annex I are not at favourable status although there is much variation both between countries and regions and between habitats. The results will be discussed at European level and at member state level with a case study of the German national report. At the same time a number of methodical problems became apparent both in Germany and at EU-level. Work is already under way to improve the next report for the period 2007 – 2012. The dimension of management needs, threats and pressures and the time scale for improvements of the conservation status are discussed. Habitats linked to agriculture appear to be particularly unfavourable.

ASSESSING THE CONSERVATION STATUS OF EUROPEAN UNION HABITATS – RESULTS OF THE COMMUNITY REPORT WITH A CASE STUDY OF THE GERMAN NATIONAL REPORT

Directory of Open Access Journals (Sweden)

S. BALZER

2010-01-01

Full Text Available The EU Habitats Directive requires all member states to report every 6 years on the implementation of the Directive. The report covering the period 2000 – 2006 included for the first time an assessment of the conservation status of the habitats and species listed on annexes I, II, IV & V of the Habitats Directive following an agreed format. Based on national reports submitted from member States the European Topic Centre on Biological Diversity has prepared assessments for each biogeographical region at EU-level. The majority of the habitats of Annex I are not at favourable status although there is much variation both between countries and regions and between habitats. The results will be discussed at European level and at member state level with a case study of the German national report. At the same time a number of methodical problems became apparent both in Germany and at EU-level. Work is already under way to improve the next report for the period 2007 – 2012. The dimension of management needs, threats and pressures and the time scale for improvements of the conservation status are discussed. Habitats linked to agriculture appear to be particularly unfavourable.

Potential climate change effects on the habitat of antarctic krill in the weddell quadrant of the southern ocean.

Science.gov (United States)

Hill, Simeon L; Phillips, Tony; Atkinson, Angus

2013-01-01

Antarctic krill is a cold water species, an increasingly important fishery resource and a major prey item for many fish, birds and mammals in the Southern Ocean. The fishery and the summer foraging sites of many of these predators are concentrated between 0° and 90°W. Parts of this quadrant have experienced recent localised sea surface warming of up to 0.2°C per decade, and projections suggest that further widespread warming of 0.27° to 1.08°C will occur by the late 21(st) century. We assessed the potential influence of this projected warming on Antarctic krill habitat with a statistical model that links growth to temperature and chlorophyll concentration. The results divide the quadrant into two zones: a band around the Antarctic Circumpolar Current in which habitat quality is particularly vulnerable to warming, and a southern area which is relatively insensitive. Our analysis suggests that the direct effects of warming could reduce the area of growth habitat by up to 20%. The reduction in growth habitat within the range of predators, such as Antarctic fur seals, that forage from breeding sites on South Georgia could be up to 55%, and the habitat's ability to support Antarctic krill biomass production within this range could be reduced by up to 68%. Sensitivity analysis suggests that the effects of a 50% change in summer chlorophyll concentration could be more significant than the direct effects of warming. A reduction in primary production could lead to further habitat degradation but, even if chlorophyll increased by 50%, projected warming would still cause some degradation of the habitat accessible to predators. While there is considerable uncertainty in these projections, they suggest that future climate change could have a significant negative effect on Antarctic krill growth habitat and, consequently, on Southern Ocean biodiversity and ecosystem services.

Deep Space Habitat Concept Demonstrator

Science.gov (United States)

Bookout, Paul S.; Smitherman, David

2015-01-01

This project will develop, integrate, test, and evaluate Habitation Systems that will be utilized as technology testbeds and will advance NASA's understanding of alternative deep space mission architectures, requirements, and operations concepts. Rapid prototyping and existing hardware will be utilized to develop full-scale habitat demonstrators. FY 2014 focused on the development of a large volume Space Launch System (SLS) class habitat (Skylab Gen 2) based on the SLS hydrogen tank components. Similar to the original Skylab, a tank section of the SLS rocket can be outfitted with a deep space habitat configuration and launched as a payload on an SLS rocket. This concept can be used to support extended stay at the Lunar Distant Retrograde Orbit to support the Asteroid Retrieval Mission and provide a habitat suitable for human missions to Mars.

Salmon River Habitat Enhancement, 1984 Annual Report.

Energy Technology Data Exchange (ETDEWEB)

Konopacky, Richard C.

1986-04-01

This report has four volumes: a Tribal project annual report (Part 1) and three reports (Parts 2, 3, and 4) prepared for the Tribes by their engineering subcontractor. The Tribal project annual report contains reports for four subprojects within Project 83-359. Subproject I involved habitat and fish inventories in Bear Valley Creek, Valley County, Idaho that will be used to evaluate responses to ongoing habitat enhancement. Subproject II is the coordination/planning activities of the Project Leader in relation to other BPA-funded habitat enhancement projects that have or will occur within the traditional Treaty (Fort Bridger Treaty of 1868) fishing areas of the Shoshone-Bannock Tribes, Fort Hall Reservation, Idaho. Subproject III involved habitat and fish inventories (pretreatment) and habitat problem identification on the Yankee Fork of the Salmon River (including Jordan Creek). Subproject IV during 1985 involved habitat problem identification in the East Fork of the Salmon River and habitat and fish inventories (pretreatment) in Herd Creek, a tributary to the East Fork.

Loss and modification of habitat

Science.gov (United States)

Lemckert, Francis; Hecnar, Stephen; Pilliod, David S.; Wilkinson, John W.; Heatwole, Harold

2012-01-01

Amphibians live in a wide variety of habitats around the world, many of which have been modified or destroyed by human activities. Most species have unique life history characteristics adapted to specific climates, habitats (e.g., lentic, lotic, terrestrial, arboreal, fossorial, amphibious), and local conditions that provide suitable areas for reproduction, development and growth, shelter from environmental extremes, and predation, as well as connectivity to other populations or habitats. Although some species are entirely aquatic or terrestrial, most amphibians, as their name implies, lead a dual life and require a mosaic of habitats in both aquatic and terrestrial ecosystems. With over 6 billion people on Earth, most species are now persisting in habitats that have been directly or indirectly influenced by human activities. Some species have disappeared where their habitats have been completely destroyed, reduced, or rendered unsuitable. Habitat loss and degradation are widely considered by most researchers as the most important causes of amphibian population decline globally (Barinaga 1990; Wake and Morowitz 1991; Alford and Richards 1999). In this chapter, a background on the diverse habitat requirements of amphibians is provided, followed by a discussion of the effects of urbanization, agriculture, livestock grazing, timber production and harvesting, fire and hazardous fuel management, and roads on amphibians and their habitats. Also briefly discussed is the influence on amphibian habitats of natural disturbances, such as extreme weather events and climate change, given the potential for human activities to impact climate in the longer term. For amphibians in general, microhabitats are of greater importance than for other vertebrates. As ectotherms with a skin that is permeable to water and with naked gelatinous eggs, amphibians are physiologically constrained to be active during environmental conditions that provide appropriate body temperatures and adequate

Evaluating the provenance of fine sediment in degraded Freshwater Pearl Mussel habitats.

Science.gov (United States)

Blake, Will; Haley, Steve; Goddard, Rupert; Stone, Peter; Broadhead, Kat

2015-04-01

Freshwater Pearl Mussels (FWPM), Margaritifera margaritifera, are among the most critically threatened freshwater bivalves worldwide. In addition to their important roles in particle processing, nutrient release, and sediment mixing, they also serve as an ideal target species for evaluation of aquatic ecosystem functioning especially in the context of their symbiotic relationship with Atlantic salmon Salmo salar and brown or sea trout Salmo trutta. Poor water quality, particularly eutrophication, and siltation are considered major contributory factors in the decline of the species hence management of diffuse water pollution from agriculture (DWPA) is a key priority in catchments that host FWPM habitats. Against this background, this study adopted a combined monitoring, surveying and sediment fingerprinting approach to determine the principal sources of fine sediment impacting FWPM habitats in the River Clun, a Special area of Conservation (SAC) for FWPMs in central western UK. Potential sediment production hotspot areas in the ca 200 km2 catchment area upstream of FWPM habitats were initially evaluated using the SCIMAP risk mapping tool. Suspended sediment monitoring was undertaken on the main stem channel where FWPM habitats are located and wet weather catchment walkover surveys undertaken along the upstream river and stream network. Within this monitoring framework, sediment fingerprinting was undertaken at two levels. The first level aimed to link primary catchment sources (cultivated and uncultivated soil, channel bank erosion, and material transported via roads and tracks) to suspended sediment output from each main tributary upstream of the FWPM beds. The second level linked silt in the FWMP beds to the main tributaries, as integrated source end-members, with the inclusion of main channel bank erosion, a notable feature of walkover surveys as an additional source. Geochemical fingerprints, determined by XRF spectroscopy, were dominated by conservative mineral

NORTHWOODS Wildlife Habitat Data Base

Science.gov (United States)

Mark D. Nelson; Janine M. Benyus; Richard R. Buech

1992-01-01

Wildlife habitat data from seven Great Lakes National Forests were combined into a wildlife-habitat matrix named NORTHWOODS. Several electronic file formats of NORTHWOODS data base and documentation are available on floppy disks for microcomputers.

Quantifying functional connectivity: The role of breeding habitat, abundance, and landscape features on range-wide gene flow in sage-grouse

Science.gov (United States)

Jeffrey R. Row; Kevin E. Doherty; Todd B. Cross; Michael K. Schwartz; Sara Oyler-McCance; Dave E. Naugle; Steven T. Knick; Bradley C. Fedy

2018-01-01

Functional connectivity, quantified using landscape genetics, can inform conservation through the identification of factors linking genetic structure to landscape mechanisms. We used breeding habitat metrics, landscape attributes and indices of grouse abundance, to compare fit between structural connectivity and genetic differentiation within five long‐established Sage...

Effects of Grazing Management and Cattle on Aquatic Habitat Use by the Anuran Pseudopaludicola mystacalis in Agro-Savannah Landscapes.

Directory of Open Access Journals (Sweden)

Rodolfo M Pelinson

Full Text Available Because of their strong dependence on the environment, the spatial distribution of pond-breeding amphibians can be greatly influenced by anthropogenic habitat alteration. In some agricultural landscapes in Brazil, the anuran Pseudopaludicola mystacalis appears to be highly influenced by land use. Because adult males and tadpoles of this species are usually found in marshy areas with cattle hoof prints, we hypothesized that P. mystacalis preferentially occupies aquatic habitats with marshy areas that are trampled by cattle. To test our hypothesis, we assessed whether the occurrence of P. mystacalis is associated with the presence of cattle and trampled marshy areas, and which environmental features best explain the spatial distribution and abundance of P. mystacalis. To do so, we sampled 38 aquatic habitats in an area intensely used for livestock in southeastern Brazil. We found that the presence of cattle and trampled marshy areas in aquatic habitats are positively associated to P. mystacalis occurrence. Additionally, the abundance of calling males is better predicted by variables of landscape and local habitat structure. Specifically, the size of trampled marshy areas and the proportion of herbaceous vegetation within the aquatic habitat are positively associated with abundance, while distance to nearest aquatic habitat are negatively associated with abundance of calling males. All three of these variables can be directly or indirectly linked to the presence of cattle or grazing management. Therefore, this work shows evidence that Pseudopaludicola mystacalis is positively influenced by grazing management with cattle, and draws attention to other unknown potential consequences of different land use to fresh water diversity.

50 CFR 17.94 - Critical habitats.

Science.gov (United States)

2010-10-01

... habitats. (a) The areas listed in § 17.95 (fish and wildlife) and § 17.96 (plants) and referred to in the... physical constituent elements within the defined area of Critical Habitat that are essential to the... 50 Wildlife and Fisheries 2 2010-10-01 2010-10-01 false Critical habitats. 17.94 Section 17.94...

The areal extent of brown shrimp habitat suitability in Mobile Bay, Alabama, USA: Targeting vegetated habitat restoration

Science.gov (United States)

Smith, L.M.; Nestlerode, J.A.; Harwell, L.C.; Bourgeois, P.

2010-01-01

The availability of wetlands and shallow water habitats significantly influences Gulf of Mexico (GOM) penaeid shrimp fishery productivity. However, the GOM region has the highest rate of wetland loss in the USA. Protection and management of these vital GOM habitats are critical to sustainable shrimp fisheries. Brown shrimp (Farfantepenaeus aztecus) are a major component of GOM fisheries. We present an approach for estimating the areal extent of suitable habitat for post-larval and juvenile brown shrimp in Mobile Bay, Alabama, using an existing habitat suitability index model for the northern GOM calculated from probabilistic survey of water quality and sediment data, land cover data, and submerged aquatic vegetation coverages. This estuarine scale approach is intended to support targeted protection and restoration of these habitats. These analyses indicate that approximately 60% of the area of Mobile Bay is categorized as suitable to near optimal for post-larval and juvenile shrimp and 38% of the area is marginally to minimally suitable. We identify potential units within Mobile Bay for targeted restoration to improve habitat suitability. ?? 2010 Springer Science+Business Media B.V.

Habitat evaluation of wild Amur tiger (Panthera tigris altaica) and conservation priority setting in north-eastern China.

Science.gov (United States)

Xiaofeng, Luan; Yi, Qu; Diqiang, Li; Shirong, Liu; Xiulei, Wang; Bo, Wu; Chunquan, Zhu

2011-01-01

The Amur Tiger (Panthera tigris altaica) is one of the world's most endangered species. Recently, habitat fragmentation, food scarcity and human hunting have drastically reduced the population size and distribution areas of Amur tigers in the wild, leaving them on the verge of extinction. Presently, they are only found in the north-eastern part of China. In this study, we developed a reference framework using methods and technologies of analytic hierarchy process (AHP), remote sensing (RS), geographic information system (GIS), GAP analysis and Natural Break (Jenks) classification to evaluate the habitat and to set the conservation priorities for Amur tigers in eastern areas of Heilongjiang and Jilin Provinces of northeast China. We proposed a Habitat Suitability Index (HSI) incorporating 7 factors covering natural conditions and human disturbance. Based on the HSI values, the suitability was classified into five levels from the most to not suitable. Finally, according to results of GAP analysis, we identified six conservation priorities and designed a conservation landscape incorporating four new nature reserves, enlarging two existing ones, and creating four linkages for Amur tigers in northeast China. The case study showed that the core habitats (the most suitable and highly suitable habitats) identified for Amur tigers covered 35,547 km(2), accounting for approximately 26.71% of the total study area (1,33,093 km(2)). However, existing nature reserves protected only (7124 km(2) or) 20.04% of the identified core habitats. Thus, enlargement of current reserves is necessary and urgent for the tiger's conservation and restoration. Moreover, the establishment of wildlife corridors linking core habitats will provide an efficient reserve network for tiger conservation to maintain the evolutionary potential of Amur tigers facing environmental changes. Copyright © 2010 Elsevier Ltd. All rights reserved.

Distribution of oil from the Gulf War spill within intertidal habitats - one year later

International Nuclear Information System (INIS)

Hayes, M.O.; Michel, J.; Montelo, T.M.; Al-Mansi, A.M.; Jensen, J.R.; Narumalani, S.; Aurand, D.V.; Al-Momen, A.H.; Thayer, G.W.

1993-01-01

Results of a land-based intertidal survey of the impacts of the Gulf War oil spill on the Saudi Arabian coast, carried out from 1 March to 4 April 1992 in conjunction with Leg II of the NOAA ship Mt. Mitchell's ROPME Sea cruise, show that there is a striking correlation between the near shore geomorphology and the persistence of intertidal oil. Significant quantities of oil (measured in millions of gallons) remained in the sediments of the sheltered tidal flat/marsh areas, and significant erosion of oiled sediments has occurred along many of the outer exposed areas. A massive asphalt pavement, tens of meters wide and over 20 kilometers long, which is believed to have formed as a result of the Nowruz spill of 1983, occurs along the outer coast of the Abu Ali headland. Along certain other exposed outer sand beaches, conditions are conducive to the formation and preservation of a similar asphalt pavement as a result of the Gulf War spill. The most severely impacted areas studied were several halophyte marsh algal mat complexes and mudflats at the heads of sheltered bays, where all the halophytes were dead and there was no sign of living epibiota in the mid to upper intertidal areas. Before the spill, burrowing infauna, such as crabs and polychaetes, occurred in large numbers in these sheltered areas. The previously occupied burrows were heavily oiled, with some containing liquid black oil to depths of over 40 cm. The deep penetration of oil into the burrows and probable slow weathering rates of the oil could result in many years of pollution of these sheltered habitats. Depths of penetration of oil into bubble sand exceeding 40 cm were found at several localities. This deep oil will also remain in the sediment for many years, because of the slow erosion rates that occur in these sheltered environments. Many unoiled portions were rich in epifaunal and infaunal populations of invertebrates and plants. Shorebirds were observed feeding in these unoiled areas

Fuzzy modelling of Atlantic salmon physical habitat

Science.gov (United States)

St-Hilaire, André; Mocq, Julien; Cunjak, Richard

2015-04-01

Fish habitat models typically attempt to quantify the amount of available river habitat for a given fish species for various flow and hydraulic conditions. To achieve this, information on the preferred range of values of key physical habitat variables (e.g. water level, velocity, substrate diameter) for the targeted fishs pecies need to be modelled. In this context, we developed several habitat suitability indices sets for three Atlantic salmon life stages (young-of-the-year (YOY), parr, spawning adults) with the help of fuzzy logic modeling. Using the knowledge of twenty-seven experts, from both sides of the Atlantic Ocean, we defined fuzzy sets of four variables (depth, substrate size, velocity and Habitat Suitability Index, or HSI) and associated fuzzy rules. When applied to the Romaine River (Canada), median curves of standardized Weighted Usable Area (WUA) were calculated and a confidence interval was obtained by bootstrap resampling. Despite the large range of WUA covered by the expert WUA curves, confidence intervals were relatively narrow: an average width of 0.095 (on a scale of 0 to 1) for spawning habitat, 0.155 for parr rearing habitat and 0.160 for YOY rearing habitat. When considering an environmental flow value corresponding to 90% of the maximum reached by WUA curve, results seem acceptable for the Romaine River. Generally, this proposed fuzzy logic method seems suitable to model habitat availability for the three life stages, while also providing an estimate of uncertainty in salmon preferences.

Does learning or instinct shape habitat selection?

Directory of Open Access Journals (Sweden)

Scott E Nielsen

Full Text Available Habitat selection is an important behavioural process widely studied for its population-level effects. Models of habitat selection are, however, often fit without a mechanistic consideration. Here, we investigated whether patterns in habitat selection result from instinct or learning for a population of grizzly bears (Ursus arctos in Alberta, Canada. We found that habitat selection and relatedness were positively correlated in female bears during the fall season, with a trend in the spring, but not during any season for males. This suggests that habitat selection is a learned behaviour because males do not participate in parental care: a genetically predetermined behaviour (instinct would have resulted in habitat selection and relatedness correlations for both sexes. Geographic distance and home range overlap among animals did not alter correlations indicating that dispersal and spatial autocorrelation had little effect on the observed trends. These results suggest that habitat selection in grizzly bears are partly learned from their mothers, which could have implications for the translocation of wildlife to novel environments.

Habitat preference of Roan Antelope (Hippotragus equinus ...

African Journals Online (AJOL)

Key words: Habitat Preference, Roan Antelope, Seasons. INTRODUCTION. Habitat quality and quantity have been identified as the primary limiting factors that influence animal population dynamics. (Jansen et al., 2001). Habitat influences the presence, abundance, distribution, movement and behavior of game animals.

Molecular Characterization of Subtype H11N9 Avian Influenza Virus Isolated from Shorebirds in Brazil.

Directory of Open Access Journals (Sweden)

Renata Hurtado

Full Text Available Migratory aquatic birds play an important role in the maintenance and spread of avian influenza viruses (AIV. Many species of aquatic migratory birds tend to use similar migration routes, also known as flyways, which serve as important circuits for the dissemination of AIV. In recent years there has been extensive surveillance of the virus in aquatic birds in the Northern Hemisphere; however in contrast only a few studies have been attempted to detect AIV in wild birds in South America. There are major flyways connecting South America to Central and North America, whereas avian migration routes between South America and the remaining continents are uncommon. As a result, it has been hypothesized that South American AIV strains would be most closely related to the strains from North America than to those from other regions in the world. We characterized the full genome of three AIV subtype H11N9 isolates obtained from ruddy turnstones (Arenaria interpres on the Amazon coast of Brazil. For all gene segments, all three strains consistently clustered together within evolutionary lineages of AIV that had been previously described from aquatic birds in North America. In particular, the H11N9 isolates were remarkably closely related to AIV strains from shorebirds sampled at the Delaware Bay region, on the Northeastern coast of the USA, more than 5000 km away from where the isolates were retrieved. Additionally, there was also evidence of genetic similarity to AIV strains from ducks and teals from interior USA and Canada. These findings corroborate that migratory flyways of aquatic birds play an important role in determining the genetic structure of AIV in the Western hemisphere, with a strong epidemiological connectivity between North and South America.

Teaching animal habitat selection using wildlife tracking equipment

Science.gov (United States)

Laskowski, Jessica; Gillespie, Caitlyn R.; Corral, Lucia; Oden, Amy; Fricke, Kent A.; Fontaine, Joseph J.

2016-01-01

We present a hands-on outdoor activity coupled with classroom discussion to teach students about wildlife habitat selection, the process by which animals choose where to live. By selecting locations or habitats with many benefits (e.g., food, shelter, mates) and few costs (e.g., predators), animals improve their ability to survive and reproduce. Biologists track animal movement using radio telemetry technology to study habitat selection so they can better provide species with habitats that promote population growth. We present a curriculum in which students locate “animals” (transmitters) using radio telemetry equipment and apply math skills (use of fractions and percentages) to assess their “animal's” habitat selection by comparing the availability of habitat types with the proportion of “animals” they find in each habitat type.

Creating complex habitats for restoration and reconciliation

NARCIS (Netherlands)

Loke, L.H.L.; Ladle, R.J.; Bouma, T.J.; Todd, P.A.

2015-01-01

Simplification of natural habitats has become a major conservation challenge and there is a growing consensus that incorporating and enhancing habitat complexity is likely to be critical for future restoration efforts. Habitat complexity is often ascribed an important role in controlling species

Habitat fragmentation, vole population fluctuations, and the ROMPA hypothesis: An experimental test using model landscapes.

Science.gov (United States)

Batzli, George O

2016-11-01

Increased habitat fragmentation leads to smaller size of habitat patches and to greater distance between patches. The ROMPA hypothesis (ratio of optimal to marginal patch area) uniquely links vole population fluctuations to the composition of the landscape. It states that as ROMPA decreases (fragmentation increases), vole population fluctuations will increase (including the tendency to display multi-annual cycles in abundance) because decreased proportions of optimal habitat result in greater population declines and longer recovery time after a harsh season. To date, only comparative observations in the field have supported the hypothesis. This paper reports the results of the first experimental test. I used prairie voles, Microtus ochrogaster, and mowed grassland to create model landscapes with 3 levels of ROMPA (high with 25% mowed, medium with 50% mowed and low with 75% mowed). As ROMPA decreased, distances between patches of favorable habitat (high cover) increased owing to a greater proportion of unfavorable (mowed) habitat. Results from the first year with intensive live trapping indicated that the preconditions for operation of the hypothesis existed (inversely density dependent emigration and, as ROMPA decreased, increased per capita mortality and decreased per capita movement between optimal patches). Nevertheless, contrary to the prediction of the hypothesis that populations in landscapes with high ROMPA should have the lowest variability, 5 years of trapping indicated that variability was lowest with medium ROMPA. The design of field experiments may never be perfect, but these results indicate that the ROMPA hypothesis needs further rigorous testing. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

Developing statistical wildlife habitat relationships for assessing cumulative effects of fuels treatments: Final Report for Joint Fire Science Program Project

Science.gov (United States)

Samuel A. Cushman; Kevin S. McKelvey

2006-01-01

The primary weakness in our current ability to evaluate future landscapes in terms of wildlife lies in the lack of quantitative models linking wildlife to forest stand conditions, including fuels treatments. This project focuses on 1) developing statistical wildlife habitat relationships models (WHR) utilizing Forest Inventory and Analysis (FIA) and National Vegetation...

Habitat specialization through germination cueing

DEFF Research Database (Denmark)

Ten Brink, Dirk-Jan; Hendriksma, Harmen; Bruun, Hans Henrik

2013-01-01

This study examined the adaptive association between seed germination ecology and specialization to either forest or open habitats across a range of evolutionary lineages of seed plants, in order to test the hypotheses that (1) species' specialization to open vs. shaded habitats is consistently...

Linking linear programming and spatial simulation models to predict landscape effects of forest management alternatives

Science.gov (United States)

Eric J. Gustafson; L. Jay Roberts; Larry A. Leefers

2006-01-01

Forest management planners require analytical tools to assess the effects of alternative strategies on the sometimes disparate benefits from forests such as timber production and wildlife habitat. We assessed the spatial patterns of alternative management strategies by linking two models that were developed for different purposes. We used a linear programming model (...

Habitat Use and Selection by Giant Pandas

Science.gov (United States)

Hull, Vanessa; Zhang, Jindong; Huang, Jinyan; Zhou, Shiqiang; Viña, Andrés; Shortridge, Ashton; Li, Rengui; Liu, Dian; Xu, Weihua; Ouyang, Zhiyun; Zhang, Hemin; Liu, Jianguo

2016-01-01

Animals make choices about where to spend their time in complex and dynamic landscapes, choices that reveal information about their biology that in turn can be used to guide their conservation. Using GPS collars, we conducted a novel individual-based analysis of habitat use and selection by the elusive and endangered giant pandas (Ailuropoda melanoleuca). We constructed spatial autoregressive resource utilization functions (RUF) to model the relationship between the pandas' utilization distributions and various habitat characteristics over a continuous space across seasons. Results reveal several new insights, including use of a broader range of habitat characteristics than previously understood for the species, particularly steep slopes and non-forest areas. We also used compositional analysis to analyze habitat selection (use with respect to availability of habitat types) at two selection levels. Pandas selected against low terrain position and against the highest clumped forest at the at-home range level, but no significant factors were identified at the within-home range level. Our results have implications for modeling and managing the habitat of this endangered species by illustrating how individual pandas relate to habitat and make choices that differ from assumptions made in broad scale models. Our study also highlights the value of using a spatial autoregressive RUF approach on animal species for which a complete picture of individual-level habitat use and selection across space is otherwise lacking. PMID:27627805

Habitat Use and Selection by Giant Pandas.

Directory of Open Access Journals (Sweden)

Vanessa Hull

Full Text Available Animals make choices about where to spend their time in complex and dynamic landscapes, choices that reveal information about their biology that in turn can be used to guide their conservation. Using GPS collars, we conducted a novel individual-based analysis of habitat use and selection by the elusive and endangered giant pandas (Ailuropoda melanoleuca. We constructed spatial autoregressive resource utilization functions (RUF to model the relationship between the pandas' utilization distributions and various habitat characteristics over a continuous space across seasons. Results reveal several new insights, including use of a broader range of habitat characteristics than previously understood for the species, particularly steep slopes and non-forest areas. We also used compositional analysis to analyze habitat selection (use with respect to availability of habitat types at two selection levels. Pandas selected against low terrain position and against the highest clumped forest at the at-home range level, but no significant factors were identified at the within-home range level. Our results have implications for modeling and managing the habitat of this endangered species by illustrating how individual pandas relate to habitat and make choices that differ from assumptions made in broad scale models. Our study also highlights the value of using a spatial autoregressive RUF approach on animal species for which a complete picture of individual-level habitat use and selection across space is otherwise lacking.

Pelagic habitat visualization: the need for a third (and fourth) dimension: HabitatSpace

Science.gov (United States)

Beegle-Krause, C; Vance, Tiffany; Reusser, Debbie; Stuebe, David; Howlett, Eoin

2009-01-01

Habitat in open water is not simply a 2-D to 2.5-D surface such as the ocean bottom or the air-water interface. Rather, pelagic habitat is a 3-D volume of water that can change over time, leading us to the term habitat space. Visualization and analysis in 2-D is well supported with GIS tools, but a new tool was needed for visualization and analysis in four dimensions. Observational data (cruise profiles (xo, yo, z, to)), numerical circulation model fields (x,y,z,t), and trajectories (larval fish, 4-D line) need to be merged together in a meaningful way for visualization and analysis. As a first step toward this new framework, UNIDATA’s Integrated Data Viewer (IDV) has been used to create a set of tools for habitat analysis in 4-D. IDV was designed for 3-D+time geospatial data in the meteorological community. NetCDF JavaTM libraries allow the tool to read many file formats including remotely located data (e.g. data available via OPeNDAP ). With this project, IDV has been adapted for use in delineating habitat space for multiple fish species in the ocean. The ability to define and visualize boundaries of a water mass, which meets specific biologically relevant criteria (e.g., volume, connectedness, and inter-annual variability) based on model results and observational data, will allow managers to investigate the survival of individual year classes of commercially important fisheries. Better understanding of the survival of these year classes will lead to improved forecasting of fisheries recruitment.

Varying energetic costs of Brent Geese along a continuum from aquatic to agricultural habitats: the importance of habitat-specific energy expenditure

DEFF Research Database (Denmark)

Clausen, Kevin Kuhlmann; Clausen, Preben; Fox, Anthony David

2013-01-01

and alert than birds feeding in aquatic areas, and also spent much less time roosting. Frequency of disturbance was found to be higher in terrestrial habitats compared to aquatic habitats. These stress-related behavioural differences between habitats highlight the vulnerability of the species associated...... with adapting to different food sources. Combining time-budgets with activity-specific BMR-multiplicators showed that activity-based metabolic rates ranged from 1.7 to 2.7 × BMR within habitats exploited by Brent Geese, and emphasized that aquatic areas represent the energetically least expensive foraging...... habitat for these birds. This is largely the result of habitat-specific variation in time spent flying. These findings underline the importance of measuring habitat-specific behaviour and disturbance when studying avian energetics, and demonstrate the risk of uncritically using allometric relationships...

Data Collection and Simulation of Ecological Habitat and Recreational Habitat in the Shenandoah River, Virginia

Science.gov (United States)

Krstolic, Jennifer L.

2015-01-01

This report presents updates to methods, describes additional data collected, documents modeling results, and discusses implications from an updated habitat-flow model that can be used to predict ecological habitat for fish and recreational habitat for canoeing on the main stem Shenandoah River in Virginia. Given a 76-percent increase in population predictions for 2040 over 1995 records, increased water-withdrawal scenarios were evaluated to determine the effects on habitat and recreation in the Shenandoah River. Projected water demands for 2040 vary by watershed: the North Fork Shenandoah River shows a 55.9-percent increase, the South Fork Shenandoah River shows a 46.5-percent increase, and the main stem Shenandoah River shows a 52-percent increase; most localities are projected to approach the total permitted surface-water and groundwater withdrawals values by 2040, and a few localities are projected to exceed these values.

Assessing habitat selection when availability changes

Science.gov (United States)

Arthur, S.; Garner, G.; ,

1996-01-01

We present a method of comparing data on habitat use and availability that allows availability to differ among observations. This method is applicable when habitats change over time and when animals are unable to move throughout a predetermined study area between observations. We used maximum-likelihood techniques to derive an index that estimates the probability that each habitat type would be used if all were equally available. We also demonstrate how these indices can be used to compare relative use of available habitats, assign them ranks, and assess statistical differences between pairs of indices. The set of these indices for all habitats can be compared between groups of animals that represent different seasons, sex or age classes, or experimental treatments. This method allows quantitative comparisons among types and is not affected by arbitrary decisions about which habitats to include in the study. We provide an example by comparing the availability of four categories of sea ice concentration to their use by adult female polar bears, whose movements were monitored by satellite radio tracking in the Bering and Chukchi Seas during 1990. Use of ice categories by bears was nonrandom, and the pattern of use differed between spring and late summer seasons.

Habitat features and predictive habitat modeling for the Colorado chipmunk in southern New Mexico

Science.gov (United States)

Rivieccio, M.; Thompson, B.C.; Gould, W.R.; Boykin, K.G.

2003-01-01

Two subspecies of Colorado chipmunk (state threatened and federal species of concern) occur in southern New Mexico: Tamias quadrivittatus australis in the Organ Mountains and T. q. oscuraensis in the Oscura Mountains. We developed a GIS model of potentially suitable habitat based on vegetation and elevation features, evaluated site classifications of the GIS model, and determined vegetation and terrain features associated with chipmunk occurrence. We compared GIS model classifications with actual vegetation and elevation features measured at 37 sites. At 60 sites we measured 18 habitat variables regarding slope, aspect, tree species, shrub species, and ground cover. We used logistic regression to analyze habitat variables associated with chipmunk presence/absence. All (100%) 37 sample sites (28 predicted suitable, 9 predicted unsuitable) were classified correctly by the GIS model regarding elevation and vegetation. For 28 sites predicted suitable by the GIS model, 18 sites (64%) appeared visually suitable based on habitat variables selected from logistic regression analyses, of which 10 sites (36%) were specifically predicted as suitable habitat via logistic regression. We detected chipmunks at 70% of sites deemed suitable via the logistic regression models. Shrub cover, tree density, plant proximity, presence of logs, and presence of rock outcrop were retained in the logistic model for the Oscura Mountains; litter, shrub cover, and grass cover were retained in the logistic model for the Organ Mountains. Evaluation of predictive models illustrates the need for multi-stage analyses to best judge performance. Microhabitat analyses indicate prospective needs for different management strategies between the subspecies. Sensitivities of each population of the Colorado chipmunk to natural and prescribed fire suggest that partial burnings of areas inhabited by Colorado chipmunks in southern New Mexico may be beneficial. These partial burnings may later help avoid a fire

Instream Physical Habitat Modelling Types

DEFF Research Database (Denmark)

Conallin, John; Boegh, Eva; Krogsgaard, Jørgen

2010-01-01

The introduction of the EU Water Framework Directive (WFD) is providing member state water resource managers with significant challenges in relation to meeting the deadline for 'Good Ecological Status' by 2015. Overall, instream physical habitat modelling approaches have advantages and disadvanta......The introduction of the EU Water Framework Directive (WFD) is providing member state water resource managers with significant challenges in relation to meeting the deadline for 'Good Ecological Status' by 2015. Overall, instream physical habitat modelling approaches have advantages...... suit their situations. This paper analyses the potential of different methods available for water managers to assess hydrological and geomorphological impacts on the habitats of stream biota, as requested by the WFD. The review considers both conventional and new advanced research-based instream...... physical habitat models. In parametric and non-parametric regression models, model assumptions are often not satisfied and the models are difficult to transfer to other regions. Research-based methods such as the artificial neural networks and individual-based modelling have promising potential as water...

Assessing Impacts of Hydropower Regulation on Salmonid Habitat Connectivity to Guide River Restoration

Science.gov (United States)

Buddendorf, Bas; Geris, Josie; Malcolm, Iain; Wilkinson, Mark; Soulsby, Chris

2016-04-01

Anthropogenic activity in riverine ecosystems has led to a substantial divergence from the natural state of many rivers globally. Many of Scotland's rivers have been regulated for hydropower with increasing intensity since the 1890s. At the same time they sustain substantial populations of Atlantic Salmon (Salmo salar L.), which have a range of requirements in terms of flow and access to habitat, depending on the different life-stages. River barriers for hydropower regulation can change the spatial and temporal connectivity within river networks, the impacts of which on salmon habitat are not fully understood. Insight into such changes in connectivity, and the link with the distribution and accessibility of suitable habitat and areas of high productivity, are essential to aid restoration and/or conservation efforts. This is because they indicate where such efforts might have a higher chance of being successful in terms of providing suitable habitat and increasing river productivity. In this study we applied a graph theory approach to assess historic (natural) and contemporary (regulated) in-stream habitat connectivity of the River Lyon, an important UK salmon river that is moderately regulated for hydropower. Historic maps and GIS techniques were used to construct the two contrasting river networks (i.e., natural vs. regulated). Subsequently, connectivity metrics were used to assess the impacts of hydropower infrastructure on upstream and downstream migration possibilities for adults and juveniles, respectively. A national juvenile salmon production model was used to weight the importance of reaches for juvenile salmon production. Results indicate that the impact of barriers in the Lyon on the connectivity indices depends on the type of barrier and its location within the network, but is generally low for both adults and juveniles, and that compared to the historic river network the reduction in the amount of suitable habitat and juvenile production is most marked

Distribution, habitat and adaptability of the genus Tapirus.

Science.gov (United States)

García, Manolo J; Medici, Emília Patrícia; Naranjo, Eduardo J; Novarino, Wilson; Leonardo, Raquel S

2012-12-01

In this manuscript, as a starting point, the ancient and current distribution of the genus Tapirus are summarized, from its origins, apparently in Europe, to current ranges. Subsequently, original and current tapir habitats are described, as well as changes in ancient habitats. As the manuscript goes on, we examine the ways in which tapir species interact with their habitats and the main aspects of habitat use, spatial ecology and adaptability. Having reviewed the historic and current distribution of tapirs, as well as their use and selection of habitats, we introduce the concept of adaptability, considering that some of the tapir physiological characteristics and behavioral strategies can reduce the negative impact of habitat alteration and climate change. Finally, we provide recommendations for future research priorities. The conservation community is still missing important pieces of information for the effective conservation of tapirs and their remaining habitats in Central and South America and Southeast Asia. Reconstructing how tapir species reached their current distribution ranges, interpreting how they interact with their habitats and gathering information regarding the strategies they use to cope with habitat changes will increase our understanding about these animals and contribute to the development of conservation strategies. © 2012 Wiley Publishing Asia Pty Ltd, ISZS and IOZ/CAS.

Food technology in space habitats

Science.gov (United States)

Karel, M.

1979-01-01

The research required to develop a system that will provide for acceptable, nutritious, and safe diets for man during extended space missions is discussed. The development of a food technology system for space habitats capable of converting raw materials produced in the space habitats into acceptable food is examined.

The effect of habitat structure on prey mortality depends on predator and prey microhabitat use

Czech Academy of Sciences Publication Activity Database

Klečka, Jan; Boukal S., David

2014-01-01

Roč. 176, č. 1 (2014), s. 183-191 ISSN 0029-8549 R&D Projects: GA ČR GAP505/10/0096 Grant - others:GA JU(CZ) 145/2010/P; EU Marie Curie European Grant(CZ) PERG04-GA-2008-239543 Institutional support: RVO:60077344 Keywords : predation * predator-prey interactions * habitat complexity Subject RIV: EH - Ecology , Behaviour Impact factor: 3.093, year: 2014 http://link.springer.com/article/10.1007%2Fs00442-014-3007-6

Pollution, habitat loss, fishing, and climate change as critical threats to penguins.

Science.gov (United States)

Trathan, Phil N; García-Borboroglu, Pablo; Boersma, Dee; Bost, Charles-André; Crawford, Robert J M; Crossin, Glenn T; Cuthbert, Richard J; Dann, Peter; Davis, Lloyd Spencer; De La Puente, Santiago; Ellenberg, Ursula; Lynch, Heather J; Mattern, Thomas; Pütz, Klemens; Seddon, Philip J; Trivelpiece, Wayne; Wienecke, Barbara

2015-02-01

Cumulative human impacts across the world's oceans are considerable. We therefore examined a single model taxonomic group, the penguins (Spheniscidae), to explore how marine species and communities might be at risk of decline or extinction in the southern hemisphere. We sought to determine the most important threats to penguins and to suggest means to mitigate these threats. Our review has relevance to other taxonomic groups in the southern hemisphere and in northern latitudes, where human impacts are greater. Our review was based on an expert assessment and literature review of all 18 penguin species; 49 scientists contributed to the process. For each penguin species, we considered their range and distribution, population trends, and main anthropogenic threats over the past approximately 250 years. These threats were harvesting adults for oil, skin, and feathers and as bait for crab and rock lobster fisheries; harvesting of eggs; terrestrial habitat degradation; marine pollution; fisheries bycatch and resource competition; environmental variability and climate change; and toxic algal poisoning and disease. Habitat loss, pollution, and fishing, all factors humans can readily mitigate, remain the primary threats for penguin species. Their future resilience to further climate change impacts will almost certainly depend on addressing current threats to existing habitat degradation on land and at sea. We suggest protection of breeding habitat, linked to the designation of appropriately scaled marine reserves, including in the High Seas, will be critical for the future conservation of penguins. However, large-scale conservation zones are not always practical or politically feasible and other ecosystem-based management methods that include spatial zoning, bycatch mitigation, and robust harvest control must be developed to maintain marine biodiversity and ensure that ecosystem functioning is maintained across a variety of scales. © 2014 The Authors. Conservation Biology

Environmental variation and habitat separation among small mammals

International Nuclear Information System (INIS)

Vickery, W.L.; Iverson, S.L.; Mihok, S.; Schwartz, B.

1989-01-01

Habitat use and population density of five species of forest small mammals were monitored by annual spring snap-trap censuses at Pinawa, Manitoba, over 14 years. Population sizes were positively correlated among species and showed no evidence of density-dependent effects. Species were habitat selectors. Habitat use by species did not vary among years. Habitat separation between the dominant species was not correlated with environmental variables or with population size. We suggest that habitat selection and positive covariance among species abundances are the principal factors characterizing the dynamics of this community

The role of density-dependent and -independent processes in spawning habitat selection by salmon in an Arctic riverscape.

Directory of Open Access Journals (Sweden)

Brock M Huntsman

Full Text Available Density-dependent (DD and density-independent (DI habitat selection is strongly linked to a species' evolutionary history. Determining the relative importance of each is necessary because declining populations are not always the result of altered DI mechanisms but can often be the result of DD via a reduced carrying capacity. We developed spatially and temporally explicit models throughout the Chena River, Alaska to predict important DI mechanisms that influence Chinook salmon spawning success. We used resource-selection functions to predict suitable spawning habitat based on geomorphic characteristics, a semi-distributed water-and-energy balance hydrologic model to generate stream flow metrics, and modeled stream temperature as a function of climatic variables. Spawner counts were predicted throughout the core and periphery spawning sections of the Chena River from escapement estimates (DD and DI variables. Additionally, we used isodar analysis to identify whether spawners actively defend spawning habitat or follow an ideal free distribution along the riverscape. Aerial counts were best explained by escapement and reference to the core or periphery, while no models with DI variables were supported in the candidate set. Furthermore, isodar plots indicated habitat selection was best explained by ideal free distributions, although there was strong evidence for active defense of core spawning habitat. Our results are surprising, given salmon commonly defend spawning resources, and are likely due to competition occurring at finer spatial scales than addressed in this study.

Mourning Dove nesting habitat and nest success in Central Missouri

Science.gov (United States)

Drobney, R.D.; Schulz, J.H.; Sheriff, S.L.; Fuemmeler, W.J.

1998-01-01

Previous Mourning Dove (Zenaida macroura) nesting studies conducted in areas containing a mixture of edge and continuous habitats have focused on edge habitats. Consequently, little is known about the potential contribution of continuous habitats to dove production. In this study we evaluated the relative importance of these two extensive habitat types by monitoring the habitat use and nest success of 59 radio-marked doves during 1990-1991 in central Missouri. Of 83 nests initiated by our marked sample, most (81.9%) were located in edge habitats. Although continuous habitats were selected less as nest sites, the proportion of successful nests did not differ significantly from that in edge habitats. Our data indicate that continuous habitats should not be considered marginal nesting habitat. If the intensity of use and nest success that we observed are representative regionally or nationally, continuous habitats could contribute substantially to annual Mourning Dove production because of the high availability of these habitats throughout much of the Mourning Dove breeding range.

A test of the substitution-habitat hypothesis in amphibians.

Science.gov (United States)

Martínez-Abraín, Alejandro; Galán, Pedro

2017-12-08

Most examples that support the substitution-habitat hypothesis (human-made habitats act as substitutes of original habitat) deal with birds and mammals. We tested this hypothesis in 14 amphibians by using percentage occupancy as a proxy of habitat quality (i.e., higher occupancy percentages indicate higher quality). We classified water body types as original habitat (no or little human influence) depending on anatomical, behavioral, or physiological adaptations of each amphibian species. Ten species had relatively high probabilities (0.16-0.28) of occurrence in original habitat, moderate probability of occurrence in substitution habitats (0.11-0.14), and low probability of occurrence in refuge habitats (0.05-0.08). Thus, the substitution-habitat hypothesis only partially applies to amphibians because the low occupancy of refuges could be due to the negligible human persecution of this group (indicating good conservation status). However, low occupancy of refuges could also be due to low tolerance of refuge conditions, which could have led to selective extinction or colonization problems due to poor dispersal capabilities. That original habitats had the highest probabilities of occupancy suggests amphibians have a good conservation status in the region. They also appeared highly adaptable to anthropogenic substitution habitats. © 2017 Society for Conservation Biology.

Linking functional traits and species preferences to species’ abundance and occupancy trends through time to identify habitat changes in coastal ecosystems

DEFF Research Database (Denmark)

Pakeman, Robin J.; Hewison, Richard; Lewis, Robert John

2017-01-01

. In general, there has been a shift towards taller species with more exploitative growth forms and an increase in indicators of unfavourable habitat condition according to criteria for assessing sites designated for nature protection as part of the EU Natura 2000 network, particularly tall grasses...

Modeling Bird Migration under Climate Change: A Mechanistic Approach

Science.gov (United States)

Smith, James A.

2009-01-01

How will migrating birds respond to changes in the environment under climate change? What are the implications for migratory success under the various accelerated climate change scenarios as forecast by the Intergovernmental Panel on Climate Change? How will reductions or increased variability in the number or quality of wetland stop-over sites affect migratory bird species? The answers to these questions have important ramifications for conservation biology and wildlife management. Here, we describe the use of continental scale simulation modeling to explore how spatio-temporal changes along migratory flyways affect en-route migration success. We use an individually based, biophysical, mechanistic, bird migration model to simulate the movement of shorebirds in North America as a tool to study how such factors as drought and wetland loss may impact migratory success and modify migration patterns. Our model is driven by remote sensing and climate data and incorporates important landscape variables. The energy budget components of the model include resting, foraging, and flight, but presently predation is ignored. Results/Conclusions We illustrate our model by studying the spring migration of sandpipers through the Great Plains to their Arctic breeding grounds. Why many species of shorebirds have shown significant declines remains a puzzle. Shorebirds are sensitive to stop-over quality and spacing because of their need for frequent refueling stops and their opportunistic feeding patterns. We predict bird "hydrographs that is, stop-over frequency with latitude, that are in agreement with the literature. Mean stop-over durations predicted from our model for nominal cases also are consistent with the limited, but available data. For the shorebird species simulated, our model predicts that shorebirds exhibit significant plasticity and are able to shift their migration patterns in response to changing drought conditions. However, the question remains as to whether this

Physical habitat classification and instream flow modeling to determine habitat availability during low-flow periods, North Fork Shenandoah River, Virginia

Science.gov (United States)

Krstolic, Jennifer L.; Hayes, Donald C.; Ruhl, Peter M.

2006-01-01

Increasing development and increasing water withdrawals for public, industrial, and agricultural water supply threaten to reduce streamflows in the Shenandoah River basin in Virginia. Water managers need more information to balance human water-supply needs with the daily streamflows necessary for maintaining the aquatic ecosystems. To meet the need for comprehensive information on hydrology, water supply, and instream-flow requirements of the Shenandoah River basin, the U.S. Geological Survey and the Northern Shenandoah Valley Regional Commission conducted a cooperative investigation of habitat availability during low-flow periods on the North Fork Shenandoah River. Historic streamflow data and empirical data on physical habitat, river hydraulics, fish community structure, and recreation were used to develop a physical habitat simulation model. Hydraulic measurements were made during low, medium, and high flows in six reaches at a total of 36 transects that included riffles, runs, and pools, and that had a variety of substrates and cover types. Habitat suitability criteria for fish were developed from detailed fish-community sampling and microhabitat observations. Fish were grouped into four guilds of species and life stages with similar habitat requirements. Simulated habitat was considered in the context of seasonal flow regimes to show the availability of flows that sustain suitable habitat during months when precipitation and streamflow are scarce. The North Fork Shenandoah River basin was divided into three management sections for analysis purposes: the upper section, middle section, and lower section. The months of July, August, and September were chosen to represent a low-flow period in the basin with low mean monthly flows, low precipitation, high temperatures, and high water withdrawals. Exceedance flows calculated from the combined data from these three months describe low-flow periods on the North Fork Shenandoah River. Long-term records from three

Habitat modeling for biodiversity conservation.

Science.gov (United States)

Bruce G. Marcot

2006-01-01

Habitat models address only 1 component of biodiversity but can be useful in addressing and managing single or multiple species and ecosystem functions, for projecting disturbance regimes, and in supporting decisions. I review categories and examples of habitat models, their utility for biodiversity conservation, and their roles in making conservation decisions. I...

Are habitat fragmentation, local adaptation and isolation-by-distance driving population divergence in wild rice Oryza rufipogon?

Science.gov (United States)

Zhao, Yao; Vrieling, Klaas; Liao, Hui; Xiao, Manqiu; Zhu, Yongqing; Rong, Jun; Zhang, Wenju; Wang, Yuguo; Yang, Ji; Chen, Jiakuan; Song, Zhiping

2013-11-01

Habitat fragmentation weakens the connection between populations and is accompanied with isolation by distance (IBD) and local adaptation (isolation by adaptation, IBA), both leading to genetic divergence between populations. To understand the evolutionary potential of a population and to formulate proper conservation strategies, information on the roles of IBD and IBA in driving population divergence is critical. The putative ancestor of Asian cultivated rice (Oryza sativa) is endangered in China due to habitat loss and fragmentation. We investigated the genetic variation in 11 Chinese Oryza rufipogon populations using 79 microsatellite loci to infer the effects of habitat fragmentation, IBD and IBA on genetic structure. Historical and current gene flows were found to be rare (mh  = 0.0002-0.0013, mc  = 0.007-0.029), indicating IBD and resulting in a high level of population divergence (FST  = 0.343). High within-population genetic variation (HE  = 0.377-0.515), relatively large effective population sizes (Ne  = 96-158), absence of bottlenecks and limited gene flow were found, demonstrating little impact of recent habitat fragmentation on these populations. Eleven gene-linked microsatellite loci were identified as outliers, indicating local adaptation. Hierarchical AMOVA and partial Mantel tests indicated that population divergence of Chinese O. rufipogon was significantly correlated with environmental factors, especially habitat temperature. Common garden trials detected a significant adaptive population divergence associated with latitude. Collectively, these findings imply that IBD due to historical rather than recent fragmentation, followed by local adaptation, has driven population divergence in O. rufipogon. © 2013 John Wiley & Sons Ltd.

Partitioning mechanisms of predator interference in different habitats.

Science.gov (United States)

Griffen, Blaine D; Byers, James E

2006-01-01

Prey are often consumed by multiple predator species. Predation rates on shared prey species measured in isolation often do not combine additively due to interference or facilitation among the predator species. Furthermore, the strength of predator interactions and resulting prey mortality may change with habitat type. We experimentally examined predation on amphipods in rock and algal habitats by two species of intertidal crabs, Hemigrapsus sanguineus (top predators) and Carcinus maenas (intermediate predators). Algae provided a safer habitat for amphipods when they were exposed to only a single predator species. When both predator species were present, mortality of amphipods was less than additive in both habitats. However, amphipod mortality was reduced more in rock than algal habitat because intermediate predators were less protected in rock habitat and were increasingly targeted by omnivorous top predators. We found that prey mortality in general was reduced by (1) altered foraging behavior of intermediate predators in the presence of top predators, (2) top predators switching to foraging on intermediate predators rather than shared prey, and (3) density reduction of intermediate predators. The relative importance of these three mechanisms was the same in both habitats; however, the magnitude of each was greater in rock habitat. Our study demonstrates that the strength of specific mechanisms of interference between top and intermediate predators can be quantified but cautions that these results may be habitat specific.

Restricted cross-scale habitat selection by American beavers.

Science.gov (United States)

Francis, Robert A; Taylor, Jimmy D; Dibble, Eric; Strickland, Bronson; Petro, Vanessa M; Easterwood, Christine; Wang, Guiming

2017-12-01

Animal habitat selection, among other ecological phenomena, is spatially scale dependent. Habitat selection by American beavers Castor canadensis (hereafter, beaver) has been studied at singular spatial scales, but to date no research addresses multi-scale selection. Our objectives were to determine if beaver habitat selection was specialized to semiaquatic habitats and if variables explaining habitat selection are consistent between landscape and fine spatial scales. We built maximum entropy (MaxEnt) models to relate landscape-scale presence-only data to landscape variables, and used generalized linear mixed models to evaluate fine spatial scale habitat selection using global positioning system (GPS) relocation data. Explanatory variables between the landscape and fine spatial scale were compared for consistency. Our findings suggested that beaver habitat selection at coarse (study area) and fine (within home range) scales was congruent, and was influenced by increasing amounts of woody wetland edge density and shrub edge density, and decreasing amounts of open water edge density. Habitat suitability at the landscape scale also increased with decreasing amounts of grass frequency. As territorial, central-place foragers, beavers likely trade-off open water edge density (i.e., smaller non-forested wetlands or lodges closer to banks) for defense and shorter distances to forage and obtain construction material. Woody plants along edges and expanses of open water for predator avoidance may limit beaver fitness and subsequently determine beaver habitat selection.

Habitat specialization in tropical continental shelf demersal fish assemblages.

Directory of Open Access Journals (Sweden)

Ben M Fitzpatrick

Full Text Available The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304 collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1-10 m depth, down the fore reef slope to the reef base (10-30 m depth then across the adjacent continental shelf (30-110 m depth. Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of

Beaked Whale Habitat Characterization and Prediction

National Research Council Canada - National Science Library

Ward, Jessica A; Mitchell, Glenn H; Farak, Amy M; Keane, Ellen P

2005-01-01

The objective of this study was to characterize known beaked whale habitat and create a predictive beaked whale habitat model of the Gulf of Mexico and east coast of the United States using available...

Pacific Northwest Salmon Habitat Project Database

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In the Pacific Northwest Salmon Habitat Project Database Across the Pacific Northwest, both public and private agents are working to improve riverine habitat for a...

A technical guide for monitoring wildlife habitat

Science.gov (United States)

M.M. Rowland; C.D. Vojta

2013-01-01

Information about status and trend of wildlife habitat is important for the U.S. Department of Agriculture, Forest Service to accomplish its mission and meet its legal requirements. As the steward of 193 million acres (ac) of Federal land, the Forest Service needs to evaluate the status of wildlife habitat and how it compares with desired conditions. Habitat monitoring...

Clay Animals and Their Habitats

Science.gov (United States)

Adamson, Kay

2010-01-01

Creating clay animals and their habitats with second-grade students has long been one of the author's favorite classroom activities. Students love working with clay and they also enjoy drawing animal homes. In this article, the author describes how the students created a diorama instead of drawing their clay animal's habitat. This gave students…

Interfacing models of wildlife habitat and human development to predict the future distribution of puma habitat

Science.gov (United States)

Burdett, Christopher L.; Crooks, Kevin R.; Theobald, David M.; Wilson, Kenneth R.; Boydston, Erin E.; Lyren, Lisa A.; Fisher, Robert N.; Vickers, T. Winston; Morrison, Scott A.; Boyce, Walter M.

2010-01-01

The impact of human land uses on ecological systems typically differ relative to how extensively natural conditions are modified. Exurban development is intermediate-intensity residential development that often occurs in natural landscapes. Most species-habitat models do not evaluate the effects of such intermediate levels of human development and even fewer predict how future development patterns might affect the amount and configuration of habitat. We addressed these deficiencies by interfacing a habitat model with a spatially-explicit housing-density model to study the effect of human land uses on the habitat of pumas (Puma concolor) in southern California. We studied the response of pumas to natural and anthropogenic features within their home ranges and how mortality risk varied across a gradient of human development. We also used our housing-density model to estimate past and future housing densities and model the distribution of puma habitat in 1970, 2000, and 2030. The natural landscape for pumas in our study area consisted of riparian areas, oak woodlands, and open, conifer forests embedded in a chaparral matrix. Pumas rarely incorporated suburban or urban development into their home ranges, which is consistent with the hypothesis that the behavioral decisions of individuals can be collectively manifested as population-limiting factors at broader spatial scales. Pumas incorporated rural and exurban development into their home ranges, apparently perceiving these areas as modified, rather than non-habitat. Overall, pumas used exurban areas less than expected and showed a neutral response to rural areas. However, individual pumas that selected for or showed a neutral response to exurban areas had a higher risk of mortality than pumas that selected against exurban habitat. Exurban areas are likely hotspots for puma-human conflict in southern California. Approximately 10% of our study area will transform from exurban, rural, or undeveloped areas to suburban or

Trapping Triatominae in Silvatic Habitats

Directory of Open Access Journals (Sweden)

Noireau François

2002-01-01

Full Text Available Large-scale trials of a trapping system designed to collect silvatic Triatominae are reported. Live-baited adhesive traps were tested in various ecosystems and different triatomine habitats (arboreal and terrestrial. The trials were always successful, with a rate of positive habitats generally over 20% and reaching 48.4% for palm trees of the Amazon basin. Eleven species of Triatominae belonging to the three genera of public health importance (Triatoma, Rhodnius and Panstrongylus were captured. This trapping system provides an effective way to detect the presence of triatomines in terrestrial and arboreal silvatic habitats and represents a promising tool for ecological studies. Various lines of research are contemplated to improve the performance of this trapping system.

Determinants of Habitat Selection by Hatchling Australian Freshwater Crocodiles

Science.gov (United States)

Somaweera, Ruchira; Webb, Jonathan K.; Shine, Richard

2011-01-01

Animals almost always use habitats non-randomly, but the costs and benefits of using specific habitat types remain unknown for many types of organisms. In a large lake in northwestern Australia (Lake Argyle), most hatchling (banks rather than the more widely available open banks. Mean body sizes of young crocodiles did not differ among the three habitat types. We tested four potential explanations for non-random habitat selection: proximity to nesting sites, thermal conditions, food availability, and exposure to predation. The three alternative habitat types did not differ in proximity to nesting sites, or in thermal conditions. Habitats with higher food availability harboured more hatchlings, and feeding rates (obtained by stomach-flushing of recently-captured crocodiles) were highest in such areas. Predation risk may also differ among habitats: we were twice as likely to capture a crocodile after seeing it in open-bank sites than in the other two habitat types. Thus, habitat selection of hatchling crocodiles in this system may be driven both by prey availability and by predation risk. PMID:22163308

Development of a Regional Habitat Classification Scheme for the ...

African Journals Online (AJOL)

development, image processing techniques and field survey methods are outlined. Habitat classification, and regional-scale comparisons of relative habitat composition are described. The study demonstrates the use of remote sensing data to construct digital habitat maps for the comparison of regional habitat coverage, ...

Bacterial community dynamics are linked to patterns of coral heat tolerance

KAUST Repository

Ziegler, Maren

2017-02-10

Ocean warming threatens corals and the coral reef ecosystem. Nevertheless, corals can be adapted to their thermal environment and inherit heat tolerance across generations. In addition, the diverse microbes that associate with corals have the capacity for more rapid change, potentially aiding the adaptation of long-lived corals. Here, we show that the microbiome of reef corals is different across thermally variable habitats and changes over time when corals are reciprocally transplanted. Exposing these corals to thermal bleaching conditions changes the microbiome for heat-sensitive corals, but not for heat-tolerant corals growing in habitats with natural high heat extremes. Importantly, particular bacterial taxa predict the coral host response in a short-term heat stress experiment. Such associations could result from parallel responses of the coral and the microbial community to living at high natural temperatures. A competing hypothesis is that the microbial community and coral heat tolerance are causally linked.

Bacterial community dynamics are linked to patterns of coral heat tolerance

KAUST Repository

Ziegler, Maren; Seneca, Francois O.; Yum, Lauren; Palumbi, Stephen R.; Voolstra, Christian R.

2017-01-01

Ocean warming threatens corals and the coral reef ecosystem. Nevertheless, corals can be adapted to their thermal environment and inherit heat tolerance across generations. In addition, the diverse microbes that associate with corals have the capacity for more rapid change, potentially aiding the adaptation of long-lived corals. Here, we show that the microbiome of reef corals is different across thermally variable habitats and changes over time when corals are reciprocally transplanted. Exposing these corals to thermal bleaching conditions changes the microbiome for heat-sensitive corals, but not for heat-tolerant corals growing in habitats with natural high heat extremes. Importantly, particular bacterial taxa predict the coral host response in a short-term heat stress experiment. Such associations could result from parallel responses of the coral and the microbial community to living at high natural temperatures. A competing hypothesis is that the microbial community and coral heat tolerance are causally linked.

CisLunar Habitat Internal Architecture Design Criteria

Science.gov (United States)

Jones, R.; Kennedy, K.; Howard, R.; Whitmore, M.; Martin, C.; Garate, J.

2017-01-01

BACKGROUND: In preparation for human exploration to Mars, there is a need to define the development and test program that will validate deep space operations and systems. In that context, a Proving Grounds CisLunar habitat spacecraft is being defined as the next step towards this goal. This spacecraft will operate differently from the ISS or other spacecraft in human history. The performance envelope of this spacecraft (mass, volume, power, specifications, etc.) is being defined by the Future Capabilities Study Team. This team has recognized the need for a human-centered approach for the internal architecture of this spacecraft and has commissioned a CisLunar Phase-1 Habitat Internal Architecture Study Team to develop a NASA reference configuration, providing the Agency with a "smart buyer" approach for future acquisition. THE CISLUNAR HABITAT INTERNAL ARCHITECTURE STUDY: Overall, the CisLunar Habitat Internal Architecture study will address the most significant questions and risks in the current CisLunar architecture, habitation, and operations concept development. This effort is achieved through definition of design criteria, evaluation criteria and process, design of the CisLunar Habitat Phase-1 internal architecture, and the development and fabrication of internal architecture concepts combined with rigorous and methodical Human-in-the-Loop (HITL) evaluations and testing of the conceptual innovations in a controlled test environment. The vision of the CisLunar Habitat Internal Architecture Study is to design, build, and test a CisLunar Phase-1 Habitat Internal Architecture that will be used for habitation (e.g. habitability and human factors) evaluations. The evaluations will mature CisLunar habitat evaluation tools, guidelines, and standards, and will interface with other projects such as the Advanced Exploration Systems (AES) Program integrated Power, Avionics, Software (iPAS), and Logistics for integrated human-in-the-loop testing. The mission of the Cis

Habitat selection and management of the Hawaiian crow

Science.gov (United States)

Giffen, J.G.; Scott, J.M.; Mountainspring, S.

1987-01-01

The abundance and range of the Hawaiian crow, or alala, (Corvus hawaiiensis) have decreased drastically since the 1890's. Fewer than 10 breeding pairs remained in the wild in 1985. A sample of 82 nests during 1970-82 were used to determine habitat associations. Two hundred firty-nine alala observations were used to estimate densities occurring in different vegetation types in 1978. Compared to available habitat, more nests and higher bird densities during the breeding season occurred in areas where: (1) canopy cover was > 60%; (2) koa (Acacia koa) and ohia (Metrosideros polymorpha) were dominant species in the crown layer; (3) native plants constituted > 75% of the understory cover; and (4) the elevation was 1,100-1,500 m. Compared to breeding habitat, nonbreeding habitat tended to lie at lower elevations and in wetter forests having the crown layer dominated by ohia but lacking koa. Habitat loss is a major factor underlying the decline of this species although predation on fledgings, avian disease, and shooting also have reduced the population. Remaining key habitat areas have little or no legal protection through zoning and land ownership. Preserves should be established to encompass the location of existing pairs and to assure the provision of optimum breeding habitat and suitable nonbreeding habitat.

Does habitat variability really promote metabolic network modularity?

Science.gov (United States)

Takemoto, Kazuhiro

2013-01-01

The hypothesis that variability in natural habitats promotes modular organization is widely accepted for cellular networks. However, results of some data analyses and theoretical studies have begun to cast doubt on the impact of habitat variability on modularity in metabolic networks. Therefore, we re-evaluated this hypothesis using statistical data analysis and current metabolic information. We were unable to conclude that an increase in modularity was the result of habitat variability. Although horizontal gene transfer was also considered because it may contribute for survival in a variety of environments, closely related to habitat variability, and is known to be positively correlated with network modularity, such a positive correlation was not concluded in the latest version of metabolic networks. Furthermore, we demonstrated that the previously observed increase in network modularity due to habitat variability and horizontal gene transfer was probably due to a lack of available data on metabolic reactions. Instead, we determined that modularity in metabolic networks is dependent on species growth conditions. These results may not entirely discount the impact of habitat variability and horizontal gene transfer. Rather, they highlight the need for a more suitable definition of habitat variability and a more careful examination of relationships of the network modularity with horizontal gene transfer, habitats, and environments.

Upland Nesting Prairie Shorebirds: Use of Managed Wetland Basins and Accuracy of Breeding Surveys

Directory of Open Access Journals (Sweden)

Cheri L. Gratto-Trevor

2006-06-01

Full Text Available Wetlands in southern Alberta are often managed to benefit waterfowl and cattle production. Effects on other species usually are not examined. I determined the effect of managed wetlands on upland-nesting shorebirds in southern Alberta by comparing numbers of breeding willets (Catoptrophorus semipalmatus, marbled godwits (Limosa fedoa, and long-billed curlews (Numenius americanus among areas of managed wetlands, natural wetland basins, and no wetland basins from 1995 to 2000. Surveys were carried out at 21 sites three times each year. Nine to ten of these areas (each 2 km2 were searched for nests annually from 1998-2000. Numbers of willets and marbled godwits and their nests were always highest in areas with managed wetlands, probably because almost all natural wetland basins were dry in this region in most years. Densities of willets seen during pre-incubation surveys averaged 2.3 birds/km2 in areas of managed wetlands, 0.4 in areas of natural wetland basins, and 0.1 in areas with no wetland basins. Nest densities of willets (one search each season averaged 1.5, 0.9, and 0.3 nests/km2 in areas of managed, natural, and no wetland basins, respectively. Similarly, pre-incubation surveys averaged 1.6, 0.6, and 0.2 godwits/km2 in areas of managed, natural, and no wetland basins, and 1.2, 0.3, and 0.1 godwit nests/km2. For long-billed curlews, pre-incubation surveys averaged 0.1, 0.2, and 0.1 birds/km2, and 0, 0.2, and 0 nests/km2. Nest success was similar in areas with and without managed wetlands. Shallow managed wetlands in this region appear beneficial to willets and marbled godwits, but not necessarily to long-billed curlews. Only 8% of marked willets and godwits with nests in the area were seen or heard during surveys, compared with 29% of pre-laying individuals and 42% of birds with broods. This suggests that a low and variable percentage of these birds is counted during breeding bird surveys, likely limiting their ability to adequately monitor

Gulf-Wide Information System, Environmental Sensitivity Index Habitats Database, Geographic NAD83, LDWF (2001) [esi_habitats_LDWF_2001

Data.gov (United States)

Louisiana Geographic Information Center — This data set contains sensitive biological resource data for coastal habitats in Louisiana. Vector polygons represent various habitats, including marsh types, other...

Habitat connectivity and fragmented nuthatch populations in agricultural landscapes

NARCIS (Netherlands)

Langevelde, van F.

1999-01-01

In agricultural landscapes, the habitat of many species is subject to fragmentation. When the habitat of a species is fragmented and the distances between patches of habitat are large relative to the movement distances of the species, it can be expected that the degree of habitat

Habitat connectivity and ecosystem productivity: implications from a simple model.

Science.gov (United States)

Cloern, James E

2007-01-01

The import of resources (food, nutrients) sustains biological production and food webs in resource-limited habitats. Resource export from donor habitats subsidizes production in recipient habitats, but the ecosystem-scale consequences of resource translocation are generally unknown. Here, I use a nutrient-phytoplankton-zooplankton model to show how dispersive connectivity between a shallow autotrophic habitat and a deep heterotrophic pelagic habitat can amplify overall system production in metazoan food webs. This result derives from the finite capacity of suspension feeders to capture and assimilate food particles: excess primary production in closed autotrophic habitats cannot be assimilated by consumers; however, if excess phytoplankton production is exported to food-limited heterotrophic habitats, it can be assimilated by zooplankton to support additional secondary production. Transport of regenerated nutrients from heterotrophic to autotrophic habitats sustains higher system primary production. These simulation results imply that the ecosystem-scale efficiency of nutrient transformation into metazoan biomass can be constrained by the rate of resource exchange across habitats and that it is optimized when the transport rate matches the growth rate of primary producers. Slower transport (i.e., reduced connectivity) leads to nutrient limitation of primary production in autotrophic habitats and food limitation of secondary production in heterotrophic habitats. Habitat fragmentation can therefore impose energetic constraints on the carrying capacity of aquatic ecosystems. The outcomes of ecosystem restoration through habitat creation will be determined by both functions provided by newly created aquatic habitats and the rates of hydraulic connectivity between them.

Habitat connectivity as a metric for aquatic microhabitat quality: Application to Chinook salmon spawning habitat

Science.gov (United States)

Ryan Carnie; Daniele Tonina; Jim McKean; Daniel Isaak

2016-01-01

Quality of fish habitat at the scale of a single fish, at the metre resolution, which we defined here as microhabitat, has been primarily evaluated on short reaches, and their results have been extended through long river segments with methods that do not account for connectivity, a measure of the spatial distribution of habitat patches. However, recent...

Fish habitat mitigation measures for hydrotechnical projects

International Nuclear Information System (INIS)

McPhail, G.D.; MacMillan, D.B.; Katopodis, C.

1992-01-01

In recent years, the identification and mitigation of environmental impacts of hydrotechnical projects, particularly on fish and fish habitats, have become a major component of project planning and design. Potential impacts to fish and fish habitat may include increased fish mortality, decreased species diversity, and loss or decreases in fish production due to loss of habitat or alteration of its suitability. These impacts arise from flooding of riverine habitat, alteration of flow quantity and distribution, changes in morphology, and alteration of water quality, including suspended sediments, temperature, dissolved oxygen, and mercury. The results of a study for the Canadian Federal Department of Fisheries and Oceans Central and Arctic Region, examining fish habitat mitigation techniques for their applicability to hydrotechnical projects in Canada are summarized. The requirements for achievement and verification of the no net loss policy for a project are discussed. 10 refs., 2 tabs

Prisoners in their habitat? Generalist dispersal by habitat specialists: a case study in southern water vole (Arvicola sapidus.

Directory of Open Access Journals (Sweden)

Alejandro Centeno-Cuadros

Full Text Available Habitat specialists inhabiting scarce and scattered habitat patches pose interesting questions related to dispersal such as how specialized terrestrial mammals do to colonize distant patches crossing hostile matrices. We assess dispersal patterns of the southern water vole (Arvicola sapidus, a habitat specialist whose habitat patches are distributed through less than 2% of the study area (overall 600 km² and whose populations form a dynamic metapopulational network. We predict that individuals will require a high ability to move through the inhospitable matrix in order to avoid genetic and demographic isolations. Genotypes (N = 142 for 10 microsatellites and sequences of the whole mitochondrial Control Region (N = 47 from seven localities revealed a weak but significant genetic structure partially explained by geographic distance. None of the landscape models had a significant effect on genetic structure over that of the Euclidean distance alone and no evidence for efficient barriers to dispersal was found. Contemporary gene flow was not severely limited for A. sapidus as shown by high migration rates estimates (>10% between non-neighbouring areas. Sex-biased dispersal tests did not support differences in dispersal rates, as shown by similar average axial parent-offspring distances, in close agreement with capture-mark-recapture estimates. As predicted, our results do not support any preferences of the species for specific landscape attributes on their dispersal pathways. Here, we combine field and molecular data to illustrate how a habitat specialist mammal might disperse like a habitat generalist, acquiring specific long-distance dispersal strategies as an adaptation to patchy, naturally fragmented, heterogeneous and unstable habitats.

Determinants of habitat selection by hatchling Australian freshwater crocodiles.

Directory of Open Access Journals (Sweden)

Ruchira Somaweera

Full Text Available Animals almost always use habitats non-randomly, but the costs and benefits of using specific habitat types remain unknown for many types of organisms. In a large lake in northwestern Australia (Lake Argyle, most hatchling (<12-month-old freshwater crocodiles (Crocodylus johnstoni are found in floating vegetation mats or grassy banks rather than the more widely available open banks. Mean body sizes of young crocodiles did not differ among the three habitat types. We tested four potential explanations for non-random habitat selection: proximity to nesting sites, thermal conditions, food availability, and exposure to predation. The three alternative habitat types did not differ in proximity to nesting sites, or in thermal conditions. Habitats with higher food availability harboured more hatchlings, and feeding rates (obtained by stomach-flushing of recently-captured crocodiles were highest in such areas. Predation risk may also differ among habitats: we were twice as likely to capture a crocodile after seeing it in open-bank sites than in the other two habitat types. Thus, habitat selection of hatchling crocodiles in this system may be driven both by prey availability and by predation risk.

Habitat connectivity and fragmented nuthatch populations in agricultural landscapes

OpenAIRE

Langevelde, van, F.

1999-01-01

In agricultural landscapes, the habitat of many species is subject to fragmentation. When the habitat of a species is fragmented and the distances between patches of habitat are large relative to the movement distances of the species, it can be expected that the degree of habitat connectivity affects processes at population and individual level. In this thesis, I report on a study of effects of habitat fragmentation and opportunities to mitigate these effects by planning ecological n...

Genetics of cereal adaptation to the man-made habitat

International Nuclear Information System (INIS)

De Wet, J.M.J.

1989-01-01

The wild progenitor species of all cereals are known with various degrees of certainty. Wild and cultivated taxa of the same species cross and their hybrids are generally fertile. This allows for a study of the genetics of domestication. A survey of the literature, however, reveals few such studies. The adaptation to disturbed habitats is genetically complex, and colonizing ability seems to have been a prerequisite for successful domestication. Natural seed dispersal is controlled by one to several linked genes, and behaves genetically as an overall dominant over loss of efficient seed dispersal mechanisms. Apical dominance, synchronized tillering, and increase in fecundity are complex, recessive genetic traits associated with cereal domestication. Racial evolution resulted from conscious selection by man and involves numerous loci. (author). 43 refs, 4 figs, 1 tab

The global distribution of deep-water Antipatharia habitat

Science.gov (United States)

Yesson, Chris; Bedford, Faye; Rogers, Alex D.; Taylor, Michelle L.

2017-11-01

Antipatharia are a diverse group of corals with many species found in deep water. Many Antipatharia are habitat for associates, have extreme longevity and some species can occur beyond 8500 m depth. As they are major constituents of'coral gardens', which are Vulnerable Marine Ecosystems (VMEs), knowledge of their distribution and environmental requirements is an important pre-requisite for informed conservation planning particularly where the expense and difficulty of deep-sea sampling prohibits comprehensive surveys. This study uses a global database of Antipatharia distribution data to perform habitat suitability modelling using the Maxent methodology to estimate the global extent of black coral habitat suitability. The model of habitat suitability is driven by temperature but there is notable influence from other variables of topography, surface productivity and oxygen levels. This model can be used to predict areas of suitable habitat, which can be useful for conservation planning. The global distribution of Antipatharia habitat suitability shows a marked contrast with the distribution of specimen observations, indicating that many potentially suitable areas have not been sampled, and that sampling effort has been disproportionate to shallow, accessible areas inside marine protected areas (MPAs). Although 25% of Antipatharia observations are located in MPAs, only 7-8% of predicted suitable habitat is protected, which is short of the Convention on Biological Diversity target to protect 10% of ocean habitats by 2020.

Sage-grouse habitat selection during winter in Alberta

Science.gov (United States)

Carpenter, Jennifer L.; Aldridge, Cameron L.; Boyce, Mark S.

2010-01-01

Greater sage-grouse (Centrocercus urophasianus) are dependent on sagebrush (Artemisia spp.) for food and shelter during winter, yet few studies have assessed winter habitat selection, particularly at scales applicable to conservation planning. Small changes to availability of winter habitats have caused drastic reductions in some sage-grouse populations. We modeled winter habitat selection by sage-grouse in Alberta, Canada, by using a resource selection function. Our purpose was to 1) generate a robust winter habitat-selection model for Alberta sage-grouse; 2) spatially depict habitat suitability in a Geographic Information System to identify areas with a high probability of selection and thus, conservation importance; and 3) assess the relative influence of human development, including oil and gas wells, in landscape models of winter habitat selection. Terrain and vegetation characteristics, sagebrush cover, anthropogenic landscape features, and energy development were important in top Akaike's Information Criterionselected models. During winter, sage-grouse selected dense sagebrush cover and homogenous less rugged areas, and avoided energy development and 2-track truck trails. Sage-grouse avoidance of energy development highlights the need for comprehensive management strategies that maintain suitable habitats across all seasons. ?? 2010 The Wildlife Society.

Macrofaunal communities associated with chemosynthetic habitats from the U.S. Atlantic margin: A comparison among depth and habitat types

Science.gov (United States)

Bourque, Jill R.; Robertson, Craig M.; Brooke, Sandra; Demopoulos, Amanda W.J.

2016-01-01

Hydrocarbon seeps support distinct benthic communities capable of tolerating extreme environmental conditions and utilizing reduced chemical compounds for nutrition. In recent years, several locations of methane seepage have been mapped along the U.S. Atlantic continental slope. In 2012 and 2013, two newly discovered seeps were investigated in this region: a shallow site near Baltimore Canyon (BCS, 366–412 m) and a deep site near Norfolk Canyon (NCS, 1467–1602 m), with both sites containing extensive chemosynthetic mussel bed and microbial mat habitats. Sediment push cores, suction samples, and Ekman box cores were collected to quantify the abundance, diversity, and community structure of benthic macrofauna (>300 μm) in mussel beds, mats, and slope habitats at both sites. Community data from the deep site were also assessed in relation to the associated sediment environment (organic carbon and nitrogen, stable carbon and nitrogen isotopes, grain size, and depth). Infaunal assemblages and densities differed both between depths and among habitat types. Macrofaunal densities in microbial mats were four times greater than those present in mussel beds and slope sediments and were dominated by the annelid families Dorvilleidae, Capitellidae, and Tubificidae, while mussel habitats had higher proportions of crustaceans. Diversity was lower in BCS microbial mat habitats, but higher in mussel and slope sediments compared to NCS habitats. Multivariate statistical analysis revealed specific sediment properties as important for distinguishing the macrofaunal communities, including larger grain sizes present within NCS microbial mat habitats and depleted stable carbon isotopes (δ13C) in sediments present at mussel beds. These results suggest that habitat differences in the quality and source of organic matter are driving the observed patterns in the infaunal assemblages, including high β diversity and high variability in the macrofaunal community composition. This

The energetic consequences of habitat structure for forest stream salmonids.

Science.gov (United States)

Naman, Sean M; Rosenfeld, Jordan S; Kiffney, Peter M; Richardson, John S

2018-05-08

1.Increasing habitat availability (i.e. habitat suitable for occupancy) is often assumed to elevate the abundance or production of mobile consumers; however, this relationship is often nonlinear (threshold or unimodal). Identifying the mechanisms underlying these nonlinearities is essential for predicting the ecological impacts of habitat change, yet the functional forms and ultimate causation of consumer-habitat relationships are often poorly understood. 2.Nonlinear effects of habitat on animal abundance may manifest through physical constraints on foraging that restrict consumers from accessing their resources. Subsequent spatial incongruence between consumers and resources should lead to unimodal or saturating effects of habitat availability on consumer production if increasing the area of habitat suitable for consumer occupancy comes at the expense of habitats that generate resources. However, the shape of this relationship could be sensitive to cross-ecosystem prey subsidies, which may be unrelated to recipient habitat structure and result in more linear habitat effects on consumer production. 3.We investigated habitat-productivity relationships for juveniles of stream-rearing Pacific salmon and trout (Oncorhynchus spp.), which typically forage in low-velocity pool habitats, while their prey (drifting benthic invertebrates) are produced upstream in high-velocity riffles. However, juvenile salmonids also consume subsidies of terrestrial invertebrates that may be independent of pool-riffle structure. 4.We measured salmonid biomass production in 13 experimental enclosures each containing a downstream pool and upstream riffle, spanning a gradient of relative pool area (14-80% pool). Increasing pool relative to riffle habitat area decreased prey abundance, leading to a nonlinear saturating effect on fish production. We then used bioenergetics model simulations to examine how the relationship between pool area and salmonid biomass is affected by varying levels of

Global screening for Critical Habitat in the terrestrial realm.

Science.gov (United States)

Brauneder, Kerstin M; Montes, Chloe; Blyth, Simon; Bennun, Leon; Butchart, Stuart H M; Hoffmann, Michael; Burgess, Neil D; Cuttelod, Annabelle; Jones, Matt I; Kapos, Val; Pilgrim, John; Tolley, Melissa J; Underwood, Emma C; Weatherdon, Lauren V; Brooks, Sharon E

2018-01-01

Critical Habitat has become an increasingly important concept used by the finance sector and businesses to identify areas of high biodiversity value. The International Finance Corporation (IFC) defines Critical Habitat in their highly influential Performance Standard 6 (PS6), requiring projects in Critical Habitat to achieve a net gain of biodiversity. Here we present a global screening layer of Critical Habitat in the terrestrial realm, derived from global spatial datasets covering the distributions of 12 biodiversity features aligned with guidance provided by the IFC. Each biodiversity feature is categorised as 'likely' or 'potential' Critical Habitat based on: 1. Alignment between the biodiversity feature and the IFC Critical Habitat definition; and 2. Suitability of the spatial resolution for indicating a feature's presence on the ground. Following the initial screening process, Critical Habitat must then be assessed in-situ by a qualified assessor. This analysis indicates that a total of 10% and 5% of the global terrestrial environment can be considered as likely and potential Critical Habitat, respectively, while the remaining 85% did not overlap with any of the biodiversity features assessed and was classified as 'unknown'. Likely Critical Habitat was determined principally by the occurrence of Key Biodiversity Areas and Protected Areas. Potential Critical Habitat was predominantly characterised by data representing highly threatened and unique ecosystems such as ever-wet tropical forests and tropical dry forests. The areas we identified as likely or potential Critical Habitat are based on the best available global-scale data for the terrestrial realm that is aligned with IFC's Critical Habitat definition. Our results can help businesses screen potential development sites at the early project stage based on a range of biodiversity features. However, the study also demonstrates several important data gaps and highlights the need to incorporate new and

Ground beetle habitat templets and riverbank integrity

OpenAIRE

Van Looy, Kris; Vanacker, Stijn; Jochems, Hans; De Blust, Geert; Dufrêne, M

2006-01-01

The habitat templet approach was used in a scale-sensitive bioindicator assessment for the ecological integrity of riverbanks and for specific responses to river management. Ground beetle habitat templets were derived from a catchment scale sampling, integrating the overall variety of bank types. This coarse-filter analysis was integrated in the reach scale fine-filtering approaches of community responses to habitat integrity and river management impacts. Higher species diversity was associat...

A Review of Bioeconomic Modelling of Habitat-Fisheries Interactions

Directory of Open Access Journals (Sweden)

Naomi S. Foley

2012-01-01

Full Text Available This paper reviews the bioeconomic literature on habitat-fisheries connections. Many such connections have been explored in the bioeconomic literature; however, missing from the literature is an analysis merging the potential influences of habitat on both fish stocks and fisheries into one general, overarching theoretical model. We attempt to clarify the nature of linkages between the function of habitats and the economic activities they support. More specifically, we identify theoretically the ways that habitat may enter the standard Gordon-Schaefer model, and nest these interactions in the general model. Habitat influences are defined as either biophysical or bioeconomic. Biophysical effects relate to the functional role of habitat in the growth of the fish stock and may be either essential or facultative to the species. Bioeconomic interactions relate to the effect of habitat on fisheries and can be shown through either the harvest function or the profit function. We review how habitat loss can affect stock, effort, and harvest under open access and maximum economic yield managed fisheries.

Bird assemblage patterns in relation to anthropogenic habitat ...

African Journals Online (AJOL)

Using habitat stratification, birds were surveyed along transects in tidal and supralittoral sub-habitats using DISTANCE sampling protocol, and along the river by encounter rates to determine abundance and species richness. Indices of human activity as well as habitat structure parameters including ground cover, plant ...

Integrating and interpreting the Habitats- and Birds Directives

NARCIS (Netherlands)

Kistenkas, F.H.

2005-01-01

The Birds Directive of 1979 and the Habitats Directive of 1992 might be seen as the two major EU nature conservation directives, both protecting a habitats network throughout Europe and species. The transposition of both the Habitats and Birds Directive (HBD) into domestic national or subnational

Adaptive breeding habitat selection: Is it for the birds?

Science.gov (United States)

Chalfoun, Anna D.; Schmidt, Kenneth A.

2012-01-01

The question of why animals choose particular habitats has important implications for understanding behavioral evolution and distribution of organisms in the wild and for delineating between habitats of different quality for conservation and management. Habitats chosen by animals can influence fitness outcomes via the costs (e.g., predation risk) and benefits (e.g., food availability) of habitat use. Habitat preferences should therefore be under selection to favor those that confer fitness advantages (Clark and Shutler 1999). Indeed, prevailing theory suggests that the habitat preferences of animals should be adaptive, such that fitness is higher in preferred habitats (Hildén 1965, Southwood 1977, Martin 1998). However, studies have often identified apparent mismatches between observed habitat preferences and fitness outcomes across a wide variety of taxa (Valladares and Lawton 1991, Mayhew 1997, Kolbe and Janzen 2002, Arlt and Pärt 2007, Mägi et al. 2009). Certainly, one limitation of studies may be that assessment of “fitness” is typically constrained to fitness surrogates such as nest success rather than lifetime reproductive success or classic Fisherian fitness (Endler 1986). Nevertheless, important habitat choices such as nest sites influence the probability that temporarily sedentary, dependent young are discovered by enemies such as predators and parasites. We therefore expect, on average, to see congruence between evolved habitat preferences and relevant components of fitness (e.g., nest success). Here, we (1) review the prevalence of apparent mismatches between avian breeding-habitat preferences and fitness outcomes using nest-site selection as a focus; (2) describe several potential mechanisms for such mismatches, including anthropogenic, methodological, and ecological–evolutionary; and (3) suggest a framework for understanding the contexts in which habitat preferences represent adaptive decisions, with a primary focus on ecological information

Larval habitats of Anopheles gambiae s.s. (Diptera: Culicidae influences vector competence to Plasmodium falciparum parasites

Directory of Open Access Journals (Sweden)

Gouagna Louis C

2007-04-01

Full Text Available Abstract Background The origin of highly competent malaria vectors has been linked to productive larval habitats in the field, but there isn't solid quantitative or qualitative data to support it. To test this, the effect of larval habitat soil substrates on larval development time, pupation rates and vector competence of Anopheles gambiae to Plasmodium falciparum were examined. Methods Soils were collected from active larval habitats with sandy and clay substrates from field sites and their total organic matter estimated. An. gambiae larvae were reared on these soil substrates and the larval development time and pupation rates monitored. The emerging adult mosquitoes were then artificially fed blood with infectious P. falciparum gametocytes from human volunteers and their midguts examined for oocyst infection after seven days. The wing sizes of the mosquitoes were also measured. The effect of autoclaving the soil substrates was also evaluated. Results The total organic matter was significantly different between clay and sandy soils after autoclaving (P = 0.022. A generalized liner model (GLM analysis identified habitat type (clay soil, sandy soil, or lake water and autoclaving (that reduces presence of microbes as significant factors affecting larval development time and oocyst infection intensities in adults. Autoclaving the soils resulted in the production of significantly smaller sized mosquitoes (P = 0.008. Autoclaving clay soils resulted in a significant reduction in Plasmodium falciparum oocyst intensities (P = 0.041 in clay soils (unautoclaved clay soils (4.28 ± 0.18 oocysts/midgut; autoclaved clay soils = 1.17 ± 0.55 oocysts/midgut although no difference (P = 0.480 in infection rates was observed between clay soils (10.4%, sandy soils (5.3% or lake water (7.9%. Conclusion This study suggests an important nutritional role for organic matter and microbial fauna on mosquito fitness and vector competence. It shows that the quality of

Geomorphology and Sustainable Subsistence Habitats

Science.gov (United States)

Johnson, A. C.; Kruger, L. E.

2016-02-01

Climatic, tectonic, and human-related impacts are changing the distribution of shoreline habitats and associated species used as food resources. There is a need to summarize current and future shoreline geomorphic - biotic relationships and better understand potential impacts to native customary and traditional gathering patterns. By strategically integrating Native knowledge and observations, we create an inclusive vulnerability assessment strategy resulting in a win-win opportunity for resource users and research scientists alike. We merged the NOAA ShoreZone database with results from over sixty student intern discussions in six southeast Alaska Native communities. Changes in shore width and unit length were derived using near shore bathymetry depths and available isostatic rebound, tectonic movement, and rates of sea level rise. Physical attributes including slope, substrate, and exposure were associated with presence and abundance of specific species. Student interns, selected by Tribes and Tribal associations, conducted resource-based discussions with community members to summarize species use, characteristics of species habitat, transportation used to access collection areas, and potential threats to habitats. Geomorphic trends and community observations were summarized to assess potential threats within a spatial context. Given current measured rates of uplift and sea level rise, 2.4 to 0 m of uplift along with 0.20 m of sea level rise is expected in the next 100 years. Coastlines of southeast Alaska will be subject to both drowning (primarily to the south) and emergence (primarily to the north). We predict decreases in estuary and sediment-dominated shoreline length and an increase in rocky habitats. These geomorphic changes, combined with resident's concerns, highlight six major interrelated coastal vulnerabilities including: (1) reduction of clam and clam habitat quantity and quality, (2) reduction in chiton quality and quantity, (3) harmful expansion of

Ghost of habitat past: historic habitat affects the contemporary distribution of giant garter snakes in a modified landscape.

Science.gov (United States)

Halstead, Brian J.; Wylie, Glenn D.; Casazza, Michael L.

2014-01-01

Historic habitat conditions can affect contemporary communities and populations, but most studies of historic habitat are based on the reduction in habitat extent or connectivity. Little is known about the effects of historic habitat on contemporary species distributions when historic habitat has been nearly completely removed, but species persist in a highly altered landscape. More than 93% of the historic wetlands in the Central Valley of California, USA, have been drained and converted to agricultural and other uses, but agricultural wetlands, such as rice and its supporting infrastructure of canals, allow some species to persist. Little is known about the distribution of giant garter snakes Thamnophis gigas, a rare aquatic snake species inhabiting this predominantly agricultural landscape, or the variables that affect where this species occurs. We used occupancy modeling to examine the distribution of giant garter snakes at the landscape scale in the Sacramento Valley (northern portion of the Central Valley) of California, with an emphasis on the relative strength of historic and contemporary variables (landscape-scale habitat, local microhabitat, vegetation composition and relative prey counts) for predicting giant garter snake occurrence. Proximity to historic marsh best explained variation in the probability of occurrence of giant garter snakes at the landscape scale, with greater probability of occurrence near historic marsh. We suspect that the importance of distance to historic marsh represents dispersal limitations of giant garter snakes. These results suggest that preserving and restoring areas near historic marsh, and minimizing activities that reduce the extent of marsh or marsh-like (e.g. rice agriculture, canal) habitats near historic marsh may be advantageous to giant garter snakes.

An index of reservoir habitat impairment

Science.gov (United States)

Miranda, L.E.; Hunt, K.M.

2011-01-01

Fish habitat impairment resulting from natural and anthropogenic watershed and in-lake processes has in many cases reduced the ability of reservoirs to sustain native fish assemblages and fisheries quality. Rehabilitation of impaired reservoirs is hindered by the lack of a method suitable for scoring impairment status. To address this limitation, an index of reservoir habitat impairment (IRHI) was developed by merging 14 metrics descriptive of common impairment sources, with each metric scored from 0 (no impairment) to 5 (high impairment) by fisheries scientists with local knowledge. With a plausible range of 5 to 25, distribution of the IRHI scores ranged from 5 to 23 over 482 randomly selected reservoirs dispersed throughout the USA. The IRHI reflected five impairment factors including siltation, structural habitat, eutrophication, water regime, and aquatic plants. The factors were weakly related to key reservoir characteristics including reservoir area, depth, age, and usetype, suggesting that common reservoir descriptors are poor predictors of fish habitat impairment. The IRHI is rapid and inexpensive to calculate, provides an easily understood measure of the overall habitat impairment, allows comparison of reservoirs and therefore prioritization of restoration activities, and may be used to track restoration progress. The major limitation of the IRHI is its reliance on unstandardized professional judgment rather than standardized empirical measurements. ?? 2010 US Government.

Modeling hurricane effects on mangrove ecosystems

Science.gov (United States)

Doyle, Thomas W.

1997-01-01

Mangrove ecosystems are at their most northern limit along the coastline of Florida and in isolated areas of the gulf coast in Louisiana and Texas. Mangroves are marine-based forests that have adapted to colonize and persist in salty intertidal waters. Three species of mangrove trees are common to the United States, black mangrove (Avicennia germinans), white mangrove (Laguncularia racemosa), and red mangrove (Rhizophora mangle). Mangroves are highly productive ecosystems and provide valuable habitat for fisheries and shorebirds. They are susceptible to lightning and hurricane disturbance, both of which occur frequently in south Florida. Climate change studies predict that, while these storms may not become more frequent, they may become more intense with warming sea temperatures. Sea-level rise alone has the potential for increasing the severity of storm surge, particularly in areas where coastal habitats and barrier shorelines are rapidly deteriorating. Given this possibility, U.S. Geological Survey researchers modeled the impact of hurricanes on south Florida mangrove communities.

Adapting environmental management to uncertain but inevitable change.

Science.gov (United States)

Nicol, Sam; Fuller, Richard A; Iwamura, Takuya; Chadès, Iadine

2015-06-07

Implementation of adaptation actions to protect biodiversity is limited by uncertainty about the future. One reason for this is the fear of making the wrong decisions caused by the myriad future scenarios presented to decision-makers. We propose an adaptive management (AM) method for optimally managing a population under uncertain and changing habitat conditions. Our approach incorporates multiple future scenarios and continually learns the best management strategy from observations, even as conditions change. We demonstrate the performance of our AM approach by applying it to the spatial management of migratory shorebird habitats on the East Asian-Australasian flyway, predicted to be severely impacted by future sea-level rise. By accounting for non-stationary dynamics, our solution protects 25,000 more birds per year than the current best stationary approach. Our approach can be applied to many ecological systems that require efficient adaptation strategies for an uncertain future. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Habitat factors influencing the distribution of Cymbopogon validus in ...

African Journals Online (AJOL)

Habitat factors influencing the distribution of Cymbopogon validus in Mkambati Game Reserve, Transkei. ... disturbance; game reserve; grassland; grasslands; habitat conditions; habitat factors; mkambati game ... AJOL African Journals Online.

HABITAT PREFERENSIAL TARSIUS BELITUNG (Cephalopachus bancanus saltator Elliot, 1910

Directory of Open Access Journals (Sweden)

Fifin Fitriana

2017-04-01

Full Text Available Belitung tarsier (Cephalopachus bancanus saltator is an endemic species in Belitung Island from Cephalopachus genus. Existence of belitung tarsier in its habitat is now under threatened by deforestatition. Due to lack information about its habitat and as conservation effort, this research was tackled to reveal the characteristic of habitat preference of belitung tarsier. The aim of this study are to identify characteristic of habitat preference of belitung tarsier. This research was conducted in March until May 2016 at around Mount Tajam Protected Forest and plantation area. Presence of tarsiers were identified by direct observation, urine odor detection, identifying based tarsier habitat suitability and the local information. Chi-square and Neu methode was used to analyze the variable of habitat preference of belitung tarsiers. This research found that characteristics of habitat preference of belitung tarsier consisted of its homerange was prefer to dry land agricultural and shurb land cover type, not too tight canopy cover (Leaf Area Index /LAI value of 0,83-2,46, close to the edge of forest (0 -874 m, roads (0 – 3.698 m and settlements (0-403 m, elevation range was between 1 -142 m asl, slope slightly (0-15%, temperature 24-25 0C and high rainfall (3.222 – 3.229 mm/year. Characteristic of habitat preference information could be considered to develop conservation action of belitung tarsier. Keywords: belitung tarsiers, habitat, habitat preference, tarsier  

Enhancements of the "eHabitat

Science.gov (United States)

Santoro, M.; Dubois, G.; Schulz, M.; Skøien, J. O.; Nativi, S.; Peedell, S.; Boldrini, E.

2012-04-01

The number of interoperable research infrastructures has increased significantly with the growing awareness of the efforts made by the Global Earth Observation System of Systems (GEOSS). One of the Social Benefit Areas (SBA) that is benefiting most from GEOSS is biodiversity, given the costs of monitoring the environment and managing complex information, from space observations to species records including their genetic characteristics. But GEOSS goes beyond the simple sharing of the data as it encourages the connectivity of models (the GEOSS Model Web), an approach easing the handling of often complex multi-disciplinary questions such as understanding the impact of environmental and climatological factors on ecosystems and habitats. In the context of GEOSS Architecture Implementation Pilot - Phase 3 (AIP-3), the EC-funded EuroGEOSS and GENESIS projects have developed and successfully demonstrated the "eHabitat" use scenario dealing with Climate Change and Biodiversity domains. Based on the EuroGEOSS multidisciplinary brokering infrastructure and on the DOPA (Digital Observatory for Protected Areas, see http://dopa.jrc.ec.europa.eu/), this scenario demonstrated how a GEOSS-based interoperability infrastructure can aid decision makers to assess and possibly forecast the irreplaceability of a given protected area, an essential indicator for assessing the criticality of threats this protected area is exposed to. The "eHabitat" use scenario was advanced in the GEOSS Sprint to Plenary activity; the advanced scenario will include the "EuroGEOSS Data Access Broker" and a new version of the eHabitat model in order to support the use of uncertain data. The multidisciplinary interoperability infrastructure which is used to demonstrate the "eHabitat" use scenario is composed of the following main components: a) A Discovery Broker: this component is able to discover resources from a plethora of different and heterogeneous geospatial services, presenting them on a single and

Algal subsidies enhance invertebrate prey for threatened shorebirds: A novel conservation tool on ocean beaches?

Science.gov (United States)

Schlacher, Thomas A.; Hutton, Briony M.; Gilby, Ben L.; Porch, Nicholaus; Maguire, Grainne S.; Maslo, Brooke; Connolly, Rod M.; Olds, Andrew D.; Weston, Michael A.

2017-05-01

Birds breeding on ocean beaches are threatened globally, often requiring significant investments in species conservation and habitat management. Conservation actions typically encompass spatial and temporal threat reductions and protection of eggs and broods. Still, populations decline or recover only slowly, calling for fresh approaches in beach-bird conservation. Because energetic demands are critically high during the nesting and chick rearing phases, and chick survival is particularly low, supplementing prey to breeding birds and their offspring is theoretically attractive as a means to complement more traditional conservation measures. Prey for plovers and similar species on ocean beaches consists of invertebrates (e.g. small crustaceans, insects) many of which feed on stranded masses of plant material (e.g. kelp and seagrass) and use this 'wrack' as habitat. We added wrack to the upper beach where plovers nest and their chicks forage to test whether algal subsidies promote the abundance and diversity of their invertebrate prey. Adding wrack to the upper beach significantly increased the abundance and diversity of invertebrate prey items. At wrack subsidies greater than 50% of surface cover invertebrate assemblages became highly distinct compared with those that received smaller additions of wrack. Substantial (2-4 fold) increases in the abundance amphipods and isopods that are principal prey items for plovers drove these shifts. This proof-of-concept study demonstrates the feasibility of food provisioning for birds on ocean shores. Whilst novel, it is practicable, inexpensive and does not introduce further restrictions or man-made structures. Thus, it can meaningfully add to the broader arsenal of conservation tools for threatened species that are wholly reliant on sandy beaches as breeding and foraging habitats.

Habitat split and the global decline of amphibians.

Science.gov (United States)

Becker, Carlos Guilherme; Fonseca, Carlos Roberto; Haddad, Célio Fernando Baptista; Batista, Rômulo Fernandes; Prado, Paulo Inácio

2007-12-14

The worldwide decline in amphibians has been attributed to several causes, especially habitat loss and disease. We identified a further factor, namely "habitat split"-defined as human-induced disconnection between habitats used by different life history stages of a species-which forces forest-associated amphibians with aquatic larvae to make risky breeding migrations between suitable aquatic and terrestrial habitats. In the Brazilian Atlantic Forest, we found that habitat split negatively affects the richness of species with aquatic larvae but not the richness of species with terrestrial development (the latter can complete their life cycle inside forest remnants). This mechanism helps to explain why species with aquatic larvae have the highest incidence of population decline. These findings reinforce the need for the conservation and restoration of riparian vegetation.

Steelhead Critical Habitat, Coast - NOAA [ds122

Data.gov (United States)

California Department of Resources — This layer depicts areas designated for Steelhead Critical Habitat as well as habitat type and quality in the Coastal California Steelhead ESUs (evolutionarily...

Designated Critical Habitat

Data.gov (United States)

Kansas Data Access and Support Center — Critical habitats include those areas documented as currently supporting self-sustaining populations of any threatened or endangered species of wildlife as well as...

Chinook Critical Habitat, Coast - NOAA [ds124

Data.gov (United States)

California Department of Resources — This layer depicts areas designated for Chinook Critical Habitat as well as habitat type and quality in the California Coastal Evolutionary Significant Unit (ESU -...

Parasite diversity of disease-bearing rodents of Southeast Asia: habitat determinants and effects on sexual size dimorphism and life-traits

Directory of Open Access Journals (Sweden)

Serge eMorand

2015-10-01

Full Text Available We investigated a causal chain of relationships between habitat specialization and parasite species richness in rodent communities in Southeast Asia, and the consequences for variation in immune investment (using spleen size, the degree of sexual competition (using testes and sexual size dimorphism (SSD. We used data gathered on rodents, their habitat specialization and their parasites (macro- and micro-parasites in Southeast Asian landscapes. The results supported the hypotheses that parasite diversity drives the evolution of host life-traits and sexual selection. Firstly host habitat specialization explained the variation in parasite species richness. Secondly high parasite species richness was linked to host immune investment, using the relative spleen size of rodents. Thirdly according to the potential costs associated with immune investment, the relative spleen size was found to be negatively correlated with the relative size of testes among rodents. Fourthly, a positive relationship between male-biased SSD and parasite species richness was observed supporting the role of parasitism in sexual selection. Finally, the variation in SSD was positively associated with the degree of habitat specialization. Highest values of female-biased SSD were associated with habitat specialization, whereas highest values of male-biased SSD concerned synanthropic or generalist rodent species. These results, also correlative, will help to facilitate selection of the species that should be thoroughly investigated at the population level to better understand the selective effects of parasites on rodent life-history and behavior.

Aquatic food webs in mangrove and seagrass habitats of Centla Wetland, a Biosphere Reserve in Southeastern Mexico

Directory of Open Access Journals (Sweden)

Manuel Mendoza-Carranza

Full Text Available Mangrove and seagrass habitats are important components of tropical coastal zones worldwide, and are conspicuous habitats of Centla Wetland Biosphere Reserve (CWBR in Tabasco, Mexico. In this study, we examine food webs in mangrove- and seagrass-dominated habitats of CWBR using stable isotope ratios of carbon and nitrogen. Our objective was to identify the importance of carbon derived from mangroves and seagrasses to secondary production of aquatic consumers in this poorly studied conservation area. Carbon and nitrogen isotope ratios of basal sources and aquatic consumers indicated that the species-rich food webs of both habitats are dependent on riparian production sources. The abundant Red mangrove Rhizophora mangle appears to be a primary source of carbon for the mangrove creek food web. Even though dense seagrass beds were ubiquitous, most consumers in the lagoon food web appeared to rely on carbon derived from riparian vegetation (e.g. Phragmites australis. The introduced Amazon sailfin catfish Pterygoplichthys pardalis had isotope signatures overlapping with native species (including high-value fisheries species, suggesting potential competition for resources. Future research should examine the role played by terrestrial insects in linking riparian and aquatic food webs, and impacts of the expanding P. pardalis population on ecosystem function and fisheries in CWBR. Our findings can be used as a baseline to reinforce the conservation and management of this important reserve in the face of diverse external and internal human impacts.

Transient habitats limit development time for periodical cicadas.

Science.gov (United States)

Karban, Richard

2014-01-01

Periodical cicadas (Magicicada spp.) mature in 13 or 17 years, the longest development times for any non-diapausing insects. Selection may favor prolonged development since nymphs experience little mortality and individuals taking 17 years have been shown to have greater fecundity than those taking 13 years. Why don't periodical cicadas take even longer to develop? Nymphs feed on root xylem fluid and move little. Ovipositing females prefer fast-growing trees at forest edges. I hypothesized that (1) adults emerging at edges would be heavier than those from forest interiors and (2) habitat changes could limit development time. I collected newly eclosed females that had neither fed as adults nor moved from their site of development. For M. septendecim, females from edges were 4.9% heavier than those from the interior. I assumed that emergence density indicated habitat quality and measured density at eight sites in 1979, 1996, and 2013. Over three generations, variation in densities was great; densities at two sites crashed, and at one site they exploded to 579/m2 Habitat transience may limit development time because only adults can reassess habitats and reposition offspring. In conclusion, cicadas are affected by habitat characteristics, habitats change over 17 years, and cicadas may emerge, mate, and redistribute their offspring to track habitat dynamics.

Advantages of a Modular Mars Surface Habitat Approach

Science.gov (United States)

Rucker, Michelle A.; Hoffman, Stephan J.; Andrews, Alida; Watts, Kevin

2018-01-01

Early crewed Mars mission concepts developed by the National Aeronautics and Space Administration (NASA) assumed a single, large habitat would house six crew members for a 500-day Mars surface stay. At the end of the first mission, all surface equipment, including the habitat, -would be abandoned and the process would be repeated at a different Martian landing site. This work was documented in a series of NASA publications culminating with the Mars Design Reference Mission 5.0 (NASA-SP-2009-566). The Evolvable Mars Campaign (EMC) explored whether re-using surface equipment at a single landing site could be more affordable than the Apollo-style explore-abandon-repeat mission cadence. Initial EMC assumptions preserved the single, monolithic habitat, the only difference being a new requirement to reuse the surface habitat for multiple expedition crews. A trade study comparing a single large habitat versus smaller, modular habitats leaned towards the monolithic approach as more mass-efficient. More recent work has focused on the operational aspects of building up Mars surface infrastructure over multiple missions, and has identified compelling advantages of the modular approach that should be considered before making a final decision. This paper explores Mars surface mission operational concepts and integrated system analysis, and presents an argument for the modular habitat approach.

50 CFR 660.395 - Essential Fish Habitat (EFH)

Science.gov (United States)

2010-10-01

... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Essential Fish Habitat (EFH) 660.395... Groundfish Fisheries § 660.395 Essential Fish Habitat (EFH) Essential fish habitat (EFH) is defined as those waters and substrate necessary to fish for spawning, breeding, feeding or growth to maturity (16 U.S.C...

Juvenile-adult habitat shift in permian fossil reptiles and amphibians.

Science.gov (United States)

Bakker, R T

1982-07-02

Among extant large reptiles, juveniles often occupy different habitats from those of adults or subadults and thus avoid competition with and predation from the older animals; small juveniles often choose cryptic habitats because they are vulnerable to a wide variety of predators. Evidence from fossil humeri and femora of Early Permian reptiles collected from sediments of several distinct habitats indicate that similar shifts in habitat occurred. Juvenile Dimetrodon seem to have favored cryptic habitats around swamp and swampy lake margins; adults favored open habitats on the floodplains. Similar patterns of habitat shift seem to be present in the reptile Ophiacodon and the amphibian Eryops and may have been common in fossil tetrapods of the Permian-Triassic.

Managing harvest and habitat as integrated components

Science.gov (United States)

Osnas, Erik; Runge, Michael C.; Mattsson, Brady J.; Austin, Jane E.; Boomer, G. S.; Clark, R. G.; Devers, P.; Eadie, J. M.; Lonsdorf, E. V.; Tavernia, Brian G.

2014-01-01

In 2007, several important initiatives in the North American waterfowl management community called for an integrated approach to habitat and harvest management. The essence of the call for integration is that harvest and habitat management affect the same resources, yet exist as separate endeavours with very different regulatory contexts. A common modelling framework could help these management streams to better understand their mutual effects. Particularly, how does successful habitat management increase harvest potential? Also, how do regional habitat programmes and large-scale harvest strategies affect continental population sizes (a metric used to express habitat goals)? In the ensuing five years, several projects took on different aspects of these challenges. While all of these projects are still on-going, and are not yet sufficiently developed to produce guidance for management decisions, they have been influential in expanding the dialogue and producing some important emerging lessons. The first lesson has been that one of the more difficult aspects of integration is not the integration across decision contexts, but the integration across spatial and temporal scales. Habitat management occurs at local and regional scales. Harvest management decisions are made at a continental scale. How do these actions, taken at different scales, combine to influence waterfowl population dynamics at all scales? The second lesson has been that consideration of the interface of habitat and harvest management can generate important insights into the objectives underlying the decision context. Often the objectives are very complex and trade-off against one another. The third lesson follows from the second – if an understanding of the fundamental objectives is paramount, there is no escaping the need for a better understanding of human dimensions, specifically the desires of hunters and nonhunters and the role they play in conservation. In the end, the compelling question is

Current practices in the identification of critical habitat for threatened species.

Science.gov (United States)

Camaclang, Abbey E; Maron, Martine; Martin, Tara G; Possingham, Hugh P

2015-04-01

The term critical habitat is used to describe the subset of habitat that is essential to the survival and recovery of species. Some countries legally require that critical habitat of listed threatened and endangered species be identified and protected. However, there is little evidence to suggest that the identification of critical habitat has had much impact on species recovery. We hypothesized that this may be due at least partly to a mismatch between the intent of critical habitat identification, which is to protect sufficient habitat for species persistence and recovery, and its practice. We used content analysis to systematically review critical habitat documents from the United States, Canada, and Australia. In particular, we identified the major trends in type of information used to identify critical habitat and in occupancy of habitat identified as critical. Information about population viability was used to identify critical habitat for only 1% of the species reviewed, and for most species, designated critical habitat did not include unoccupied habitat. Without reference to population viability, it is difficult to determine how much of a species' occupied and unoccupied habitat will be required for persistence. We therefore conclude that the identification of critical habitat remains inconsistent with the goal of protecting sufficient habitat to support persistence and recovery of the species. Ensuring that critical habitat identification aligns more closely with its intent will improve the accuracy of the designations and may therefore help improve the benefits to species recovery when combined with adequate implementation and enforcement of legal protections. © 2014 Society for Conservation Biology.

Shallow rocky nursery habitat for fish: Spatial variability of juvenile fishes among this poorly protected essential habitat.

Science.gov (United States)

Cheminée, Adrien; Rider, Mary; Lenfant, Philippe; Zawadzki, Audrey; Mercière, Alexandre; Crec'hriou, Romain; Mercader, Manon; Saragoni, Gilles; Neveu, Reda; Ternon, Quentin; Pastor, Jérémy

2017-06-15

Coastal nursery habitats are essential for the renewal of adult fish populations. We quantified the availability of a coastal nursery habitat (shallow heterogeneous rocky bottoms) and the spatial variability of its juvenile fish populations along 250km of the Catalan coastline (France and Spain). Nurseries were present in 27% of the coastline, but only 2% of them benefited from strict protection status. For nine taxa characteristic of this habitat, total juvenile densities varied significantly between nursery sites along the coastline, with the highest densities being found on the northern sites. Recruitment level (i.e. a proxy of nursery value) was not explained by protection level, but it was moderately and positively correlated with an anthropization index. Patterns of spatial variations were taxa-specific. Exceptional observations of four juveniles of the protected grouper Epinephelus marginatus were recorded. Our data on habitat availability and recruitment levels provides important informations which help to focus MPA management efforts. Copyright © 2017 Elsevier Ltd. All rights reserved.

Impacts of rural development on Yellowstone wildlife: linking grizzly bear Ursus arctos demographics with projected residential growth

Science.gov (United States)

Schwartz, Charles C.; Gude, Patricia H.; Landenburger, Lisa; Haroldson, Mark A.; Podruzny, Shannon

2012-01-01

Exurban development is consuming wildlife habitat within the Greater Yellowstone Ecosystem with potential consequences to the long-term conservation of grizzly bears Ursus arctos. We assessed the impacts of alternative future land-use scenarios by linking an existing regression-based simulation model predicting rural development with a spatially explicit model that predicted bear survival. Using demographic criteria that predict population trajectory, we portioned habitats into either source or sink, and projected the loss of source habitat associated with four different build out (new home construction) scenarios through 2020. Under boom growth, we predicted that 12 km2 of source habitat were converted to sink habitat within the Grizzly Bear Recovery Zone (RZ), 189 km2 were converted within the current distribution of grizzly bears outside of the RZ, and 289 km2 were converted in the area outside the RZ identified as suitable grizzly bear habitat. Our findings showed that extremely low densities of residential development created sink habitats. We suggest that tools, such as those outlined in this article, in addition to zoning and subdivision regulation may prove more practical, and the most effective means of retaining large areas of undeveloped land and conserving grizzly bear source habitat will likely require a landscape-scale approach. We recommend a focus on land conservation efforts that retain open space (easements, purchases and trades) coupled with the implementation of ‘bear community programmes’ on an ecosystem wide basis in an effort to minimize human-bear conflicts, minimize management-related bear mortalities associated with preventable conflicts and to safeguard human communities. Our approach has application to other species and areas, and it has illustrated how spatially explicit demographic models can be combined with models predicting land-use change to help focus conservation priorities.

Intercohort density dependence drives brown trout habitat selection

Science.gov (United States)

Ayllón, Daniel; Nicola, Graciela G.; Parra, Irene; Elvira, Benigno; Almodóvar, Ana

2013-01-01

Habitat selection can be viewed as an emergent property of the quality and availability of habitat but also of the number of individuals and the way they compete for its use. Consequently, habitat selection can change across years due to fluctuating resources or to changes in population numbers. However, habitat selection predictive models often do not account for ecological dynamics, especially density dependent processes. In stage-structured population, the strength of density dependent interactions between individuals of different age classes can exert a profound influence on population trajectories and evolutionary processes. In this study, we aimed to assess the effects of fluctuating densities of both older and younger competing life stages on the habitat selection patterns (described as univariate and multivariate resource selection functions) of young-of-the-year, juvenile and adult brown trout Salmo trutta. We observed all age classes were selective in habitat choice but changed their selection patterns across years consistently with variations in the densities of older but not of younger age classes. Trout of an age increased selectivity for positions highly selected by older individuals when their density decreased, but this pattern did not hold when the density of younger age classes varied. It suggests that younger individuals are dominated by older ones but can expand their range of selected habitats when density of competitors decreases, while older trout do not seem to consider the density of younger individuals when distributing themselves even though they can negatively affect their final performance. Since these results may entail critical implications for conservation and management practices based on habitat selection models, further research should involve a wider range of river typologies and/or longer time frames to fully understand the patterns of and the mechanisms underlying the operation of density dependence on brown trout habitat

Stream Habitat Reach Summary - NCWAP [ds158

Data.gov (United States)

California Natural Resource Agency — The Stream Habitat - NCWAP - Reach Summary [ds158] shapefile contains in-stream habitat survey data summarized to the stream reach level. It is a derivative of the...

A Conceptual Approach to Recreation Habitat Analysis

National Research Council Canada - National Science Library

Hamilton, H. R

1996-01-01

.... The Habitat Evaluation Procedures (HEP) is a commonly used technique for assessing human impacts on the vigor of wildlife species, and serves as the model for the Recreation Habitat Analysis Method (RHAM...

Natural disturbance shapes benthic intertidal macroinvertebrate communities of high latitude river deltas

Science.gov (United States)

Churchwell, Roy T.; Kendall, Steve J.; Blanchard, Amy L.; Dunton, Kenneth H.; Powell, Abby N.

2016-01-01

Unlike lower latitude coastlines, the estuarine nearshore zones of the Alaskan Beaufort Sea are icebound and frozen up to 9 months annually. This annual freezing event represents a dramatic physical disturbance to fauna living within intertidal sediments. The main objectives of this study were to describe the benthic communities of Beaufort Sea deltas, including temporal changes and trophic structure. Understanding benthic invertebrate communities provided a baseline for concurrent research on shorebird foraging ecology at these sites. We found that despite continuous year-to-year episodes of annual freezing, these estuarine deltas are populated by a range of invertebrates that represent both marine and freshwater assemblages. Freshwater organisms like Diptera and Oligochaeta not only survive this extreme event, but a marine invasion of infaunal organisms such as Amphipoda and Polychaeta rapidly recolonizes the delta mudflats following ice ablation. These delta sediments of sand, silt, and clay are fine in structure compared to sediments of other Beaufort Sea coastal intertidal habitats. The relatively depauperate invertebrate community that ultimately develops is composed of marine and freshwater benthic invertebrates. The composition of the infauna also reflects two strategies that make life on Beaufort Sea deltas possible: a migration of marine organisms from deeper lagoons to the intertidal and freshwater biota that survive the 9-month ice-covered period in frozen sediments. Stable isotopic analyses reveal that both infaunal assemblages assimilate marine and terrestrial sources of organic carbon. These results provide some of the first quantitative information on the infaunal food resources of shallow arctic estuarine systems and the long-term persistence of these invertebrate assemblages. Our data help explain the presence of large numbers of shorebirds in these habitats during the brief summer open-water period and their trophic importance to migrating

Conservation education and habitat restoration for the endangered Sagalla caecilian (Boulengerula niedeni in Sagalla Hill, Kenya

Directory of Open Access Journals (Sweden)

Patrick K. MALONZA

2016-05-01

Full Text Available The Sagalla caecilian (Boulengerula niedeni is an endangered amphibian endemic to Sagalla Hill in the Taita Hills. This burrowing worm-like species prefers soft soil with high moisture and organic matter. The major threats to the Sagalla caecilian are soil erosion caused by steep slopes, bare ground and water siphoning/soil hardening from exotic eucalyptus trees. The purpose of this study was to get a better understanding of the local people's attitude towards this species and how they can contribute to its continued conservation through restoration of its remaining habitat. In this study, it was found that 96% of Sagalla people are aware of the species, its habits and its association with soils high in organic matter. It was also found that 96% of Sagalla people use organic manure from cow dung in their farms. Habitat restoration through planting of indigenous plants was found to be ongoing, especially on compounds of public institutions as well as on private lands. Although drought was found to be a challenge for seedlings development especially on the low elevation sites, destruction by livestock especially during the dry season is also a major threat. In this study, it was recommended that any future habitat restoration initiative should include strong chain-link fencing to protect the seedlings from livestock activity. Recognizing that the preferred habitats for the species are in the valleys, systematic planting of keystone plant species such as fig trees (Ficus creates the best microhabitats. These are better than general woodlots of indigenous trees.

Conservation education and habitat restoration for the endangered Sagalla caecilian (Boulengerula niedeni) in Sagalla Hill, Kenya.

Science.gov (United States)

K Malonza, Patrick

2016-05-18

The Sagalla caecilian (Boulengerula niedeni) is an endangered amphibian endemic to Sagalla Hill in the Taita Hills. This burrowing worm-like species prefers soft soil with high moisture and organic matter. The major threats to the Sagalla caecilian are soil erosion caused by steep slopes, bare ground and water siphoning/soil hardening from exotic eucalyptus trees. The purpose of this study was to get a better understanding of the local people's attitude towards this species and how they can contribute to its continued conservation through restoration of its remaining habitat. In this study, it was found that 96% of Sagalla people are aware of the species, its habits and its association with soils high in organic matter. It was also found that 96% of Sagalla people use organic manure from cow dung in their farms. Habitat restoration through planting of indigenous plants was found to be ongoing, especially on compounds of public institutions as well as on private lands. Although drought was found to be a challenge for seedlings development especially on the low elevation sites, destruction by livestock especially during the dry season is also a major threat. In this study, it was recommended that any future habitat restoration initiative should include strong chain-link fencing to protect the seedlings from livestock activity. Recognizing that the preferred habitats for the species are in the valleys, systematic planting of keystone plant species such as fig trees (Ficus) creates the best microhabitats. These are better than general woodlots of indigenous trees.

Not accounting for interindividual variability can mask habitat selection patterns: a case study on black bears.

Science.gov (United States)

Lesmerises, Rémi; St-Laurent, Martin-Hugues

2017-11-01

Habitat selection studies conducted at the population scale commonly aim to describe general patterns that could improve our understanding of the limiting factors in species-habitat relationships. Researchers often consider interindividual variation in selection patterns to control for its effects and avoid pseudoreplication by using mixed-effect models that include individuals as random factors. Here, we highlight common pitfalls and possible misinterpretations of this strategy by describing habitat selection of 21 black bears Ursus americanus. We used Bayesian mixed-effect models and compared results obtained when using random intercept (i.e., population level) versus calculating individual coefficients for each independent variable (i.e., individual level). We then related interindividual variability to individual characteristics (i.e., age, sex, reproductive status, body condition) in a multivariate analysis. The assumption of comparable behavior among individuals was verified only in 40% of the cases in our seasonal best models. Indeed, we found strong and opposite responses among sampled bears and individual coefficients were linked to individual characteristics. For some covariates, contrasted responses canceled each other out at the population level. In other cases, interindividual variability was concealed by the composition of our sample, with the majority of the bears (e.g., old individuals and bears in good physical condition) driving the population response (e.g., selection of young forest cuts). Our results stress the need to consider interindividual variability to avoid misinterpretation and uninformative results, especially for a flexible and opportunistic species. This study helps to identify some ecological drivers of interindividual variability in bear habitat selection patterns.

The evolution of mapping habitat for northern spotted owls (Strix occidentalis caurina): A comparison of photo-interpreted, Landsat-based, and lidar-based habitat maps

Science.gov (United States)

Ackers, Steven H.; Davis, Raymond J.; Olsen, K.; Dugger, Catherine

2015-01-01

Wildlife habitat mapping has evolved at a rapid pace over the last few decades. Beginning with simple, often subjective, hand-drawn maps, habitat mapping now involves complex species distribution models (SDMs) using mapped predictor variables derived from remotely sensed data. For species that inhabit large geographic areas, remote sensing technology is often essential for producing range wide maps. Habitat monitoring for northern spotted owls (Strix occidentalis caurina), whose geographic covers about 23 million ha, is based on SDMs that use Landsat Thematic Mapper imagery to create forest vegetation data layers using gradient nearest neighbor (GNN) methods. Vegetation data layers derived from GNN are modeled relationships between forest inventory plot data, climate and topographic data, and the spectral signatures acquired by the satellite. When used as predictor variables for SDMs, there is some transference of the GNN modeling error to the final habitat map.Recent increases in the use of light detection and ranging (lidar) data, coupled with the need to produce spatially accurate and detailed forest vegetation maps have spurred interest in its use for SDMs and habitat mapping. Instead of modeling predictor variables from remotely sensed spectral data, lidar provides direct measurements of vegetation height for use in SDMs. We expect a SDM habitat map produced from directly measured predictor variables to be more accurate than one produced from modeled predictors.We used maximum entropy (Maxent) SDM modeling software to compare predictive performance and estimates of habitat area between Landsat-based and lidar-based northern spotted owl SDMs and habitat maps. We explored the differences and similarities between these maps, and to a pre-existing aerial photo-interpreted habitat map produced by local wildlife biologists. The lidar-based map had the highest predictive performance based on 10 bootstrapped replicate models (AUC = 0.809 ± 0.011), but the

Salmon River Habitat Enhancement, 1989 Annual Report.

Energy Technology Data Exchange (ETDEWEB)

Rowe, Mike

1989-04-01

This project was funded by the Bonneville Power Administration (BPA). The annual report contains three individual subproject papers detailing tribal fisheries work completed during the summer and fall of 1989. Subproject 1 contains summaries of evaluation/monitoring efforts associated with the Bear Valley Creek, Idaho enhancement project. Subproject 2 contains an evaluation of the Yankee Fork of the Salmon River habitat enhancement project. This report has been sub-divided into two parts: Part 1; stream evaluation and Part 2; pond series evaluation. Subproject 3 concerns the East Fork of the Salmon River, Idaho. This report summarizes the evaluation of the project to date including the 1989 pre-construction evaluation conducted within the East Fork drainage. Dredge mining has degraded spawning and rearing habitat for chinook salmon and steelhead trout in the Yankee Fork drainage of the Salmon River and in Bear Valley Creek. Mining, agricultural, and grazing practices degraded habitat in the East Fork of the Salmon River. Biological monitoring of the success of habitat enhancement for Bear Valley Creek and Yankee Fork are presented in this report. Physical and biological inventories prior to habitat enhancement in East Fork were also conducted. Four series of off-channel ponds of the Yankee Fork are shown to provide effective rearing habitat for chinook salmon. 45 refs., 49 figs., 24 tabs.

Evaluating the habitat capability model for Merriam's turkeys

Science.gov (United States)

Mark A. Rumble; Stanley H. Anderson

1995-01-01

Habitat capability (HABCAP) models for wildlife assist land managers in predicting the consequences of their management decisions. Models must be tested and refined prior to using them in management planning. We tested the predicted patterns of habitat selection of the R2 HABCAP model using observed patterns of habitats selected by radio-marked Merriam’s turkey (

Mercury bioaccumulation and risk to three waterbird foraging guilds is influenced by foraging ecology and breeding stage

International Nuclear Information System (INIS)

Eagles-Smith, Collin A.; Ackerman, Joshua T.; De La Cruz, Susan E.W.; Takekawa, John Y.

2009-01-01

We evaluated mercury (Hg) in five waterbird species representing three foraging guilds in San Francisco Bay, CA. Fish-eating birds (Forster's and Caspian terns) had the highest Hg concentrations in thier tissues, but concentrations in an invertebrate-foraging shorebird (black-necked stilt) were also elevated. Foraging habitat was important for Hg exposure as illustrated by within-guild differences, where species more associated with marshes and salt ponds had higher concentrations than those more associated with open-bay and tidal mudflats. Importantly, Hg concentrations increased with time spent in the estuary. Surf scoter concentrations tripled over six months, whereas Forster's terns showed an up to 5-fold increase between estuary arrival and breeding. Breeding waterbirds were at elevated risk of Hg-induced reproductive impairment, particularly Forster's terns, in which 48% of breeding birds were at high risk due to their Hg levels. Our results highlight the importance of habitat and exposure timing, in addition to trophic position, on waterbird Hg bioaccumulation and risk. - The influence of foraging habitat, trophic position, and exposure timing on mercury bioaccumulation and risk to reproduction is evaluated in three waterbird guilds.

Demography of a breeding population of whimbrel (Numenius phaeopus) near Churchill, Manitoba, Canada

Science.gov (United States)

Perz, Johanna

I used a GIS raster layer of an area in the Churchill, Manitoba region to investigate the effect of breeding habitat on demography and density of Whimbrel from 2010 through 2013. Program MARK was used to quantify adult and daily nest survival. Apparent annual survival of 0.73 +/- 0.06 SE (95% CI = 0.60-0.83) did not significantly differ between sexes or habitats and was lower than expected based on longevity records and estimates for other large-bodied shorebirds. Nest success, corrected for exposure days, was highly variable, ranging from a low of 3% (95% CI = 0-12%) in 2011 to a high of 71% (95% CI = 54-83%) in 2013. The highest rate of nest survival occurred in the spring with the warmest mean temperature. I developed a generalized linear model (GLM) with a negative-binomial distribution from random plots that were surveyed for abundance to extrapolate a local breeding population size of 410 +/- 230 SE and density of 3.2 birds per square km +/- 1.8 SE. The result of my study suggests that other aspects of habitat not captured by the land cover categories may be more important to population dynamics.

Influence of habitat degradation on fish replenishment

Science.gov (United States)

McCormick, M. I.; Moore, J. A. Y.; Munday, P. L.

2010-09-01

Temperature-induced coral bleaching is a major threat to the biodiversity of coral reef ecosystems. While reductions in species diversity and abundance of fish communities have been documented following coral bleaching, the mechanisms that underlie these changes are poorly understood. The present study examined the impacts of coral bleaching on the early life-history processes of coral reef fishes. Daily monitoring of fish settlement patterns found that ten times as many fish settled to healthy coral than sub-lethally bleached coral. Species diversity of settling fishes was least on bleached coral and greatest on dead coral, with healthy coral having intermediate levels of diversity. Laboratory experiments using light-trap caught juveniles showed that different damselfish species chose among healthy, bleached and dead coral habitats using different combinations of visual and olfactory cues. The live coral specialist, Pomacentrus moluccensis, preferred live coral and avoided bleached and dead coral, using mostly visual cues to inform their habitat choice. The habitat generalist, Pomacentrus amboinensis, also preferred live coral and avoided bleached and dead coral but selected these habitats using both visual and olfactory cues. Trials with another habitat generalist, Dischistodus sp., suggested that vision played a significant role. A 20 days field experiment that manipulated densities of P. moluccensis on healthy and bleached coral heads found an influence of fish density on juvenile weight and growth, but no significant influence of habitat quality. These results suggests that coral bleaching will affect settlement patterns and species distributions by influencing the visual and olfactory cues that reef fish larvae use to make settlement choices. Furthermore, increased fish density within the remaining healthy coral habitats could play an important role in influencing population dynamics.

Global patterns of fragmentation and connectivity of mammalian carnivore habitat.

Science.gov (United States)

Crooks, Kevin R; Burdett, Christopher L; Theobald, David M; Rondinini, Carlo; Boitani, Luigi

2011-09-27

Although mammalian carnivores are vulnerable to habitat fragmentation and require landscape connectivity, their global patterns of fragmentation and connectivity have not been examined. We use recently developed high-resolution habitat suitability models to conduct comparative analyses and to identify global hotspots of fragmentation and connectivity for the world's terrestrial carnivores. Species with less fragmentation (i.e. more interior high-quality habitat) had larger geographical ranges, a greater proportion of habitat within their range, greater habitat connectivity and a lower risk of extinction. Species with higher connectivity (i.e. less habitat isolation) also had a greater proportion of high-quality habitat, but had smaller, not larger, ranges, probably reflecting shorter distances between habitat patches for species with restricted distributions; such species were also more threatened, as would be expected given the negative relationship between range size and extinction risk. Fragmentation and connectivity did not differ among Carnivora families, and body mass was associated with connectivity but not fragmentation. On average, only 54.3 per cent of a species' geographical range comprised high-quality habitat, and more troubling, only 5.2 per cent of the range comprised such habitat within protected areas. Identification of global hotspots of fragmentation and connectivity will help guide strategic priorities for carnivore conservation.