WorldWideScience

Sample records for linear mixed effect

  1. Application of Hierarchical Linear Models/Linear Mixed-Effects Models in School Effectiveness Research

    Science.gov (United States)

    Ker, H. W.

    2014-01-01

    Multilevel data are very common in educational research. Hierarchical linear models/linear mixed-effects models (HLMs/LMEs) are often utilized to analyze multilevel data nowadays. This paper discusses the problems of utilizing ordinary regressions for modeling multilevel educational data, compare the data analytic results from three regression…

  2. Non-linear mixed-effects pharmacokinetic/pharmacodynamic modelling in NLME using differential equations

    DEFF Research Database (Denmark)

    Tornøe, Christoffer Wenzel; Agersø, Henrik; Madsen, Henrik

    2004-01-01

    The standard software for non-linear mixed-effect analysis of pharmacokinetic/phar-macodynamic (PK/PD) data is NONMEM while the non-linear mixed-effects package NLME is an alternative as tong as the models are fairly simple. We present the nlmeODE package which combines the ordinary differential...... equation (ODE) solver package odesolve and the non-Linear mixed effects package NLME thereby enabling the analysis of complicated systems of ODEs by non-linear mixed-effects modelling. The pharmacokinetics of the anti-asthmatic drug theophylline is used to illustrate the applicability of the nlme...

  3. Linear and Generalized Linear Mixed Models and Their Applications

    CERN Document Server

    Jiang, Jiming

    2007-01-01

    This book covers two major classes of mixed effects models, linear mixed models and generalized linear mixed models, and it presents an up-to-date account of theory and methods in analysis of these models as well as their applications in various fields. The book offers a systematic approach to inference about non-Gaussian linear mixed models. Furthermore, it has included recently developed methods, such as mixed model diagnostics, mixed model selection, and jackknife method in the context of mixed models. The book is aimed at students, researchers and other practitioners who are interested

  4. Generalized, Linear, and Mixed Models

    CERN Document Server

    McCulloch, Charles E; Neuhaus, John M

    2011-01-01

    An accessible and self-contained introduction to statistical models-now in a modernized new editionGeneralized, Linear, and Mixed Models, Second Edition provides an up-to-date treatment of the essential techniques for developing and applying a wide variety of statistical models. The book presents thorough and unified coverage of the theory behind generalized, linear, and mixed models and highlights their similarities and differences in various construction, application, and computational aspects.A clear introduction to the basic ideas of fixed effects models, random effects models, and mixed m

  5. An R2 statistic for fixed effects in the linear mixed model.

    Science.gov (United States)

    Edwards, Lloyd J; Muller, Keith E; Wolfinger, Russell D; Qaqish, Bahjat F; Schabenberger, Oliver

    2008-12-20

    Statisticians most often use the linear mixed model to analyze Gaussian longitudinal data. The value and familiarity of the R(2) statistic in the linear univariate model naturally creates great interest in extending it to the linear mixed model. We define and describe how to compute a model R(2) statistic for the linear mixed model by using only a single model. The proposed R(2) statistic measures multivariate association between the repeated outcomes and the fixed effects in the linear mixed model. The R(2) statistic arises as a 1-1 function of an appropriate F statistic for testing all fixed effects (except typically the intercept) in a full model. The statistic compares the full model with a null model with all fixed effects deleted (except typically the intercept) while retaining exactly the same covariance structure. Furthermore, the R(2) statistic leads immediately to a natural definition of a partial R(2) statistic. A mixed model in which ethnicity gives a very small p-value as a longitudinal predictor of blood pressure (BP) compellingly illustrates the value of the statistic. In sharp contrast to the extreme p-value, a very small R(2) , a measure of statistical and scientific importance, indicates that ethnicity has an almost negligible association with the repeated BP outcomes for the study.

  6. Extending the linear model with R generalized linear, mixed effects and nonparametric regression models

    CERN Document Server

    Faraway, Julian J

    2005-01-01

    Linear models are central to the practice of statistics and form the foundation of a vast range of statistical methodologies. Julian J. Faraway''s critically acclaimed Linear Models with R examined regression and analysis of variance, demonstrated the different methods available, and showed in which situations each one applies. Following in those footsteps, Extending the Linear Model with R surveys the techniques that grow from the regression model, presenting three extensions to that framework: generalized linear models (GLMs), mixed effect models, and nonparametric regression models. The author''s treatment is thoroughly modern and covers topics that include GLM diagnostics, generalized linear mixed models, trees, and even the use of neural networks in statistics. To demonstrate the interplay of theory and practice, throughout the book the author weaves the use of the R software environment to analyze the data of real examples, providing all of the R commands necessary to reproduce the analyses. All of the ...

  7. Valid statistical approaches for analyzing sholl data: Mixed effects versus simple linear models.

    Science.gov (United States)

    Wilson, Machelle D; Sethi, Sunjay; Lein, Pamela J; Keil, Kimberly P

    2017-03-01

    The Sholl technique is widely used to quantify dendritic morphology. Data from such studies, which typically sample multiple neurons per animal, are often analyzed using simple linear models. However, simple linear models fail to account for intra-class correlation that occurs with clustered data, which can lead to faulty inferences. Mixed effects models account for intra-class correlation that occurs with clustered data; thus, these models more accurately estimate the standard deviation of the parameter estimate, which produces more accurate p-values. While mixed models are not new, their use in neuroscience has lagged behind their use in other disciplines. A review of the published literature illustrates common mistakes in analyses of Sholl data. Analysis of Sholl data collected from Golgi-stained pyramidal neurons in the hippocampus of male and female mice using both simple linear and mixed effects models demonstrates that the p-values and standard deviations obtained using the simple linear models are biased downwards and lead to erroneous rejection of the null hypothesis in some analyses. The mixed effects approach more accurately models the true variability in the data set, which leads to correct inference. Mixed effects models avoid faulty inference in Sholl analysis of data sampled from multiple neurons per animal by accounting for intra-class correlation. Given the widespread practice in neuroscience of obtaining multiple measurements per subject, there is a critical need to apply mixed effects models more widely. Copyright © 2017 Elsevier B.V. All rights reserved.

  8. Statistical Tests for Mixed Linear Models

    CERN Document Server

    Khuri, André I; Sinha, Bimal K

    2011-01-01

    An advanced discussion of linear models with mixed or random effects. In recent years a breakthrough has occurred in our ability to draw inferences from exact and optimum tests of variance component models, generating much research activity that relies on linear models with mixed and random effects. This volume covers the most important research of the past decade as well as the latest developments in hypothesis testing. It compiles all currently available results in the area of exact and optimum tests for variance component models and offers the only comprehensive treatment for these models a

  9. Multivariate generalized linear mixed models using R

    CERN Document Server

    Berridge, Damon Mark

    2011-01-01

    Multivariate Generalized Linear Mixed Models Using R presents robust and methodologically sound models for analyzing large and complex data sets, enabling readers to answer increasingly complex research questions. The book applies the principles of modeling to longitudinal data from panel and related studies via the Sabre software package in R. A Unified Framework for a Broad Class of Models The authors first discuss members of the family of generalized linear models, gradually adding complexity to the modeling framework by incorporating random effects. After reviewing the generalized linear model notation, they illustrate a range of random effects models, including three-level, multivariate, endpoint, event history, and state dependence models. They estimate the multivariate generalized linear mixed models (MGLMMs) using either standard or adaptive Gaussian quadrature. The authors also compare two-level fixed and random effects linear models. The appendices contain additional information on quadrature, model...

  10. Detecting treatment-subgroup interactions in clustered data with generalized linear mixed-effects model trees.

    Science.gov (United States)

    Fokkema, M; Smits, N; Zeileis, A; Hothorn, T; Kelderman, H

    2017-10-25

    Identification of subgroups of patients for whom treatment A is more effective than treatment B, and vice versa, is of key importance to the development of personalized medicine. Tree-based algorithms are helpful tools for the detection of such interactions, but none of the available algorithms allow for taking into account clustered or nested dataset structures, which are particularly common in psychological research. Therefore, we propose the generalized linear mixed-effects model tree (GLMM tree) algorithm, which allows for the detection of treatment-subgroup interactions, while accounting for the clustered structure of a dataset. The algorithm uses model-based recursive partitioning to detect treatment-subgroup interactions, and a GLMM to estimate the random-effects parameters. In a simulation study, GLMM trees show higher accuracy in recovering treatment-subgroup interactions, higher predictive accuracy, and lower type II error rates than linear-model-based recursive partitioning and mixed-effects regression trees. Also, GLMM trees show somewhat higher predictive accuracy than linear mixed-effects models with pre-specified interaction effects, on average. We illustrate the application of GLMM trees on an individual patient-level data meta-analysis on treatments for depression. We conclude that GLMM trees are a promising exploratory tool for the detection of treatment-subgroup interactions in clustered datasets.

  11. Estimation and Inference for Very Large Linear Mixed Effects Models

    OpenAIRE

    Gao, K.; Owen, A. B.

    2016-01-01

    Linear mixed models with large imbalanced crossed random effects structures pose severe computational problems for maximum likelihood estimation and for Bayesian analysis. The costs can grow as fast as $N^{3/2}$ when there are N observations. Such problems arise in any setting where the underlying factors satisfy a many to many relationship (instead of a nested one) and in electronic commerce applications, the N can be quite large. Methods that do not account for the correlation structure can...

  12. Modelling subject-specific childhood growth using linear mixed-effect models with cubic regression splines.

    Science.gov (United States)

    Grajeda, Laura M; Ivanescu, Andrada; Saito, Mayuko; Crainiceanu, Ciprian; Jaganath, Devan; Gilman, Robert H; Crabtree, Jean E; Kelleher, Dermott; Cabrera, Lilia; Cama, Vitaliano; Checkley, William

    2016-01-01

    Childhood growth is a cornerstone of pediatric research. Statistical models need to consider individual trajectories to adequately describe growth outcomes. Specifically, well-defined longitudinal models are essential to characterize both population and subject-specific growth. Linear mixed-effect models with cubic regression splines can account for the nonlinearity of growth curves and provide reasonable estimators of population and subject-specific growth, velocity and acceleration. We provide a stepwise approach that builds from simple to complex models, and account for the intrinsic complexity of the data. We start with standard cubic splines regression models and build up to a model that includes subject-specific random intercepts and slopes and residual autocorrelation. We then compared cubic regression splines vis-à-vis linear piecewise splines, and with varying number of knots and positions. Statistical code is provided to ensure reproducibility and improve dissemination of methods. Models are applied to longitudinal height measurements in a cohort of 215 Peruvian children followed from birth until their fourth year of life. Unexplained variability, as measured by the variance of the regression model, was reduced from 7.34 when using ordinary least squares to 0.81 (p linear mixed-effect models with random slopes and a first order continuous autoregressive error term. There was substantial heterogeneity in both the intercept (p modeled with a first order continuous autoregressive error term as evidenced by the variogram of the residuals and by a lack of association among residuals. The final model provides a parametric linear regression equation for both estimation and prediction of population- and individual-level growth in height. We show that cubic regression splines are superior to linear regression splines for the case of a small number of knots in both estimation and prediction with the full linear mixed effect model (AIC 19,352 vs. 19

  13. Para-mixed linear spaces

    Directory of Open Access Journals (Sweden)

    Crasmareanu Mircea

    2017-12-01

    Full Text Available We consider the paracomplex version of the notion of mixed linear spaces introduced by M. Jurchescu in [4] by replacing the complex unit i with the paracomplex unit j, j2 = 1. The linear algebra of these spaces is studied with a special view towards their morphisms.

  14. Effect of correlation on covariate selection in linear and nonlinear mixed effect models.

    Science.gov (United States)

    Bonate, Peter L

    2017-01-01

    The effect of correlation among covariates on covariate selection was examined with linear and nonlinear mixed effect models. Demographic covariates were extracted from the National Health and Nutrition Examination Survey III database. Concentration-time profiles were Monte Carlo simulated where only one covariate affected apparent oral clearance (CL/F). A series of univariate covariate population pharmacokinetic models was fit to the data and compared with the reduced model without covariate. The "best" covariate was identified using either the likelihood ratio test statistic or AIC. Weight and body surface area (calculated using Gehan and George equation, 1970) were highly correlated (r = 0.98). Body surface area was often selected as a better covariate than weight, sometimes as high as 1 in 5 times, when weight was the covariate used in the data generating mechanism. In a second simulation, parent drug concentration and three metabolites were simulated from a thorough QT study and used as covariates in a series of univariate linear mixed effects models of ddQTc interval prolongation. The covariate with the largest significant LRT statistic was deemed the "best" predictor. When the metabolite was formation-rate limited and only parent concentrations affected ddQTc intervals the metabolite was chosen as a better predictor as often as 1 in 5 times depending on the slope of the relationship between parent concentrations and ddQTc intervals. A correlated covariate can be chosen as being a better predictor than another covariate in a linear or nonlinear population analysis by sheer correlation These results explain why for the same drug different covariates may be identified in different analyses. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  15. Skew-t partially linear mixed-effects models for AIDS clinical studies.

    Science.gov (United States)

    Lu, Tao

    2016-01-01

    We propose partially linear mixed-effects models with asymmetry and missingness to investigate the relationship between two biomarkers in clinical studies. The proposed models take into account irregular time effects commonly observed in clinical studies under a semiparametric model framework. In addition, commonly assumed symmetric distributions for model errors are substituted by asymmetric distribution to account for skewness. Further, informative missing data mechanism is accounted for. A Bayesian approach is developed to perform parameter estimation simultaneously. The proposed model and method are applied to an AIDS dataset and comparisons with alternative models are performed.

  16. Linear mixed models for longitudinal data

    CERN Document Server

    Molenberghs, Geert

    2000-01-01

    This paperback edition is a reprint of the 2000 edition. This book provides a comprehensive treatment of linear mixed models for continuous longitudinal data. Next to model formulation, this edition puts major emphasis on exploratory data analysis for all aspects of the model, such as the marginal model, subject-specific profiles, and residual covariance structure. Further, model diagnostics and missing data receive extensive treatment. Sensitivity analysis for incomplete data is given a prominent place. Several variations to the conventional linear mixed model are discussed (a heterogeity model, conditional linear mixed models). This book will be of interest to applied statisticians and biomedical researchers in industry, public health organizations, contract research organizations, and academia. The book is explanatory rather than mathematically rigorous. Most analyses were done with the MIXED procedure of the SAS software package, and many of its features are clearly elucidated. However, some other commerc...

  17. Generalized linear longitudinal mixed models with linear covariance structure and multiplicative random effects

    DEFF Research Database (Denmark)

    Holst, René; Jørgensen, Bent

    2015-01-01

    The paper proposes a versatile class of multiplicative generalized linear longitudinal mixed models (GLLMM) with additive dispersion components, based on explicit modelling of the covariance structure. The class incorporates a longitudinal structure into the random effects models and retains...... a marginal as well as a conditional interpretation. The estimation procedure is based on a computationally efficient quasi-score method for the regression parameters combined with a REML-like bias-corrected Pearson estimating function for the dispersion and correlation parameters. This avoids...... the multidimensional integral of the conventional GLMM likelihood and allows an extension of the robust empirical sandwich estimator for use with both association and regression parameters. The method is applied to a set of otholit data, used for age determination of fish....

  18. Analysis of baseline, average, and longitudinally measured blood pressure data using linear mixed models.

    Science.gov (United States)

    Hossain, Ahmed; Beyene, Joseph

    2014-01-01

    This article compares baseline, average, and longitudinal data analysis methods for identifying genetic variants in genome-wide association study using the Genetic Analysis Workshop 18 data. We apply methods that include (a) linear mixed models with baseline measures, (b) random intercept linear mixed models with mean measures outcome, and (c) random intercept linear mixed models with longitudinal measurements. In the linear mixed models, covariates are included as fixed effects, whereas relatedness among individuals is incorporated as the variance-covariance structure of the random effect for the individuals. The overall strategy of applying linear mixed models decorrelate the data is based on Aulchenko et al.'s GRAMMAR. By analyzing systolic and diastolic blood pressure, which are used separately as outcomes, we compare the 3 methods in identifying a known genetic variant that is associated with blood pressure from chromosome 3 and simulated phenotype data. We also analyze the real phenotype data to illustrate the methods. We conclude that the linear mixed model with longitudinal measurements of diastolic blood pressure is the most accurate at identifying the known single-nucleotide polymorphism among the methods, but linear mixed models with baseline measures perform best with systolic blood pressure as the outcome.

  19. A Multiphase Non-Linear Mixed Effects Model: An Application to Spirometry after Lung Transplantation

    Science.gov (United States)

    Rajeswaran, Jeevanantham; Blackstone, Eugene H.

    2014-01-01

    In medical sciences, we often encounter longitudinal temporal relationships that are non-linear in nature. The influence of risk factors may also change across longitudinal follow-up. A system of multiphase non-linear mixed effects model is presented to model temporal patterns of longitudinal continuous measurements, with temporal decomposition to identify the phases and risk factors within each phase. Application of this model is illustrated using spirometry data after lung transplantation using readily available statistical software. This application illustrates the usefulness of our flexible model when dealing with complex non-linear patterns and time varying coefficients. PMID:24919830

  20. Partially linear mixed-effects joint models for skewed and missing longitudinal competing risks outcomes.

    Science.gov (United States)

    Lu, Tao; Lu, Minggen; Wang, Min; Zhang, Jun; Dong, Guang-Hui; Xu, Yong

    2017-12-18

    Longitudinal competing risks data frequently arise in clinical studies. Skewness and missingness are commonly observed for these data in practice. However, most joint models do not account for these data features. In this article, we propose partially linear mixed-effects joint models to analyze skew longitudinal competing risks data with missingness. In particular, to account for skewness, we replace the commonly assumed symmetric distributions by asymmetric distribution for model errors. To deal with missingness, we employ an informative missing data model. The joint models that couple the partially linear mixed-effects model for the longitudinal process, the cause-specific proportional hazard model for competing risks process and missing data process are developed. To estimate the parameters in the joint models, we propose a fully Bayesian approach based on the joint likelihood. To illustrate the proposed model and method, we implement them to an AIDS clinical study. Some interesting findings are reported. We also conduct simulation studies to validate the proposed method.

  1. From linear to generalized linear mixed models: A case study in repeated measures

    Science.gov (United States)

    Compared to traditional linear mixed models, generalized linear mixed models (GLMMs) can offer better correspondence between response variables and explanatory models, yielding more efficient estimates and tests in the analysis of data from designed experiments. Using proportion data from a designed...

  2. Longitudinal mathematics development of students with learning disabilities and students without disabilities: a comparison of linear, quadratic, and piecewise linear mixed effects models.

    Science.gov (United States)

    Kohli, Nidhi; Sullivan, Amanda L; Sadeh, Shanna; Zopluoglu, Cengiz

    2015-04-01

    Effective instructional planning and intervening rely heavily on accurate understanding of students' growth, but relatively few researchers have examined mathematics achievement trajectories, particularly for students with special needs. We applied linear, quadratic, and piecewise linear mixed-effects models to identify the best-fitting model for mathematics development over elementary and middle school and to ascertain differences in growth trajectories of children with learning disabilities relative to their typically developing peers. The analytic sample of 2150 students was drawn from the Early Childhood Longitudinal Study - Kindergarten Cohort, a nationally representative sample of United States children who entered kindergarten in 1998. We first modeled students' mathematics growth via multiple mixed-effects models to determine the best fitting model of 9-year growth and then compared the trajectories of students with and without learning disabilities. Results indicate that the piecewise linear mixed-effects model captured best the functional form of students' mathematics trajectories. In addition, there were substantial achievement gaps between students with learning disabilities and students with no disabilities, and their trajectories differed such that students without disabilities progressed at a higher rate than their peers who had learning disabilities. The results underscore the need for further research to understand how to appropriately model students' mathematics trajectories and the need for attention to mathematics achievement gaps in policy. Copyright © 2015 Society for the Study of School Psychology. Published by Elsevier Ltd. All rights reserved.

  3. A Second-Order Conditionally Linear Mixed Effects Model with Observed and Latent Variable Covariates

    Science.gov (United States)

    Harring, Jeffrey R.; Kohli, Nidhi; Silverman, Rebecca D.; Speece, Deborah L.

    2012-01-01

    A conditionally linear mixed effects model is an appropriate framework for investigating nonlinear change in a continuous latent variable that is repeatedly measured over time. The efficacy of the model is that it allows parameters that enter the specified nonlinear time-response function to be stochastic, whereas those parameters that enter in a…

  4. Linear mixed-effects models for central statistical monitoring of multicenter clinical trials

    OpenAIRE

    Desmet, L.; Venet, D.; Doffagne, E.; Timmermans, C.; BURZYKOWSKI, Tomasz; LEGRAND, Catherine; BUYSE, Marc

    2014-01-01

    Multicenter studies are widely used to meet accrual targets in clinical trials. Clinical data monitoring is required to ensure the quality and validity of the data gathered across centers. One approach to this end is central statistical monitoring, which aims at detecting atypical patterns in the data by means of statistical methods. In this context, we consider the simple case of a continuous variable, and we propose a detection procedure based on a linear mixed-effects model to detect locat...

  5. Spatial variability in floodplain sedimentation: the use of generalized linear mixed-effects models

    Directory of Open Access Journals (Sweden)

    A. Cabezas

    2010-08-01

    Full Text Available Sediment, Total Organic Carbon (TOC and total nitrogen (TN accumulation during one overbank flood (1.15 y return interval were examined at one reach of the Middle Ebro River (NE Spain for elucidating spatial patterns. To achieve this goal, four areas with different geomorphological features and located within the study reach were examined by using artificial grass mats. Within each area, 1 m2 study plots consisting of three pseudo-replicates were placed in a semi-regular grid oriented perpendicular to the main channel. TOC, TN and Particle-Size composition of deposited sediments were examined and accumulation rates estimated. Generalized linear mixed-effects models were used to analyze sedimentation patterns in order to handle clustered sampling units, specific-site effects and spatial self-correlation between observations. Our results confirm the importance of channel-floodplain morphology and site micro-topography in explaining sediment, TOC and TN deposition patterns, although the importance of other factors as vegetation pattern should be included in further studies to explain small-scale variability. Generalized linear mixed-effect models provide a good framework to deal with the high spatial heterogeneity of this phenomenon at different spatial scales, and should be further investigated in order to explore its validity when examining the importance of factors such as flood magnitude or suspended sediment concentration.

  6. Linear mixed-effects modeling approach to FMRI group analysis.

    Science.gov (United States)

    Chen, Gang; Saad, Ziad S; Britton, Jennifer C; Pine, Daniel S; Cox, Robert W

    2013-06-01

    Conventional group analysis is usually performed with Student-type t-test, regression, or standard AN(C)OVA in which the variance-covariance matrix is presumed to have a simple structure. Some correction approaches are adopted when assumptions about the covariance structure is violated. However, as experiments are designed with different degrees of sophistication, these traditional methods can become cumbersome, or even be unable to handle the situation at hand. For example, most current FMRI software packages have difficulty analyzing the following scenarios at group level: (1) taking within-subject variability into account when there are effect estimates from multiple runs or sessions; (2) continuous explanatory variables (covariates) modeling in the presence of a within-subject (repeated measures) factor, multiple subject-grouping (between-subjects) factors, or the mixture of both; (3) subject-specific adjustments in covariate modeling; (4) group analysis with estimation of hemodynamic response (HDR) function by multiple basis functions; (5) various cases of missing data in longitudinal studies; and (6) group studies involving family members or twins. Here we present a linear mixed-effects modeling (LME) methodology that extends the conventional group analysis approach to analyze many complicated cases, including the six prototypes delineated above, whose analyses would be otherwise either difficult or unfeasible under traditional frameworks such as AN(C)OVA and general linear model (GLM). In addition, the strength of the LME framework lies in its flexibility to model and estimate the variance-covariance structures for both random effects and residuals. The intraclass correlation (ICC) values can be easily obtained with an LME model with crossed random effects, even at the presence of confounding fixed effects. The simulations of one prototypical scenario indicate that the LME modeling keeps a balance between the control for false positives and the sensitivity

  7. Model Selection with the Linear Mixed Model for Longitudinal Data

    Science.gov (United States)

    Ryoo, Ji Hoon

    2011-01-01

    Model building or model selection with linear mixed models (LMMs) is complicated by the presence of both fixed effects and random effects. The fixed effects structure and random effects structure are codependent, so selection of one influences the other. Most presentations of LMM in psychology and education are based on a multilevel or…

  8. A Note on the Identifiability of Generalized Linear Mixed Models

    DEFF Research Database (Denmark)

    Labouriau, Rodrigo

    2014-01-01

    I present here a simple proof that, under general regularity conditions, the standard parametrization of generalized linear mixed model is identifiable. The proof is based on the assumptions of generalized linear mixed models on the first and second order moments and some general mild regularity...... conditions, and, therefore, is extensible to quasi-likelihood based generalized linear models. In particular, binomial and Poisson mixed models with dispersion parameter are identifiable when equipped with the standard parametrization...

  9. A simulation-based goodness-of-fit test for random effects in generalized linear mixed models

    DEFF Research Database (Denmark)

    Waagepetersen, Rasmus

    2006-01-01

    The goodness-of-fit of the distribution of random effects in a generalized linear mixed model is assessed using a conditional simulation of the random effects conditional on the observations. Provided that the specified joint model for random effects and observations is correct, the marginal...... distribution of the simulated random effects coincides with the assumed random effects distribution. In practice, the specified model depends on some unknown parameter which is replaced by an estimate. We obtain a correction for this by deriving the asymptotic distribution of the empirical distribution...

  10. A simulation-based goodness-of-fit test for random effects in generalized linear mixed models

    DEFF Research Database (Denmark)

    Waagepetersen, Rasmus Plenge

    The goodness-of-fit of the distribution of random effects in a generalized linear mixed model is assessed using a conditional simulation of the random effects conditional on the observations. Provided that the specified joint model for random effects and observations is correct, the marginal...... distribution of the simulated random effects coincides with the assumed random effects distribution. In practice the specified model depends on some unknown parameter which is replaced by an estimate. We obtain a correction for this by deriving the asymptotic distribution of the empirical distribution function...

  11. Bayesian quantile regression-based partially linear mixed-effects joint models for longitudinal data with multiple features.

    Science.gov (United States)

    Zhang, Hanze; Huang, Yangxin; Wang, Wei; Chen, Henian; Langland-Orban, Barbara

    2017-01-01

    In longitudinal AIDS studies, it is of interest to investigate the relationship between HIV viral load and CD4 cell counts, as well as the complicated time effect. Most of common models to analyze such complex longitudinal data are based on mean-regression, which fails to provide efficient estimates due to outliers and/or heavy tails. Quantile regression-based partially linear mixed-effects models, a special case of semiparametric models enjoying benefits of both parametric and nonparametric models, have the flexibility to monitor the viral dynamics nonparametrically and detect the varying CD4 effects parametrically at different quantiles of viral load. Meanwhile, it is critical to consider various data features of repeated measurements, including left-censoring due to a limit of detection, covariate measurement error, and asymmetric distribution. In this research, we first establish a Bayesian joint models that accounts for all these data features simultaneously in the framework of quantile regression-based partially linear mixed-effects models. The proposed models are applied to analyze the Multicenter AIDS Cohort Study (MACS) data. Simulation studies are also conducted to assess the performance of the proposed methods under different scenarios.

  12. A method for fitting regression splines with varying polynomial order in the linear mixed model.

    Science.gov (United States)

    Edwards, Lloyd J; Stewart, Paul W; MacDougall, James E; Helms, Ronald W

    2006-02-15

    The linear mixed model has become a widely used tool for longitudinal analysis of continuous variables. The use of regression splines in these models offers the analyst additional flexibility in the formulation of descriptive analyses, exploratory analyses and hypothesis-driven confirmatory analyses. We propose a method for fitting piecewise polynomial regression splines with varying polynomial order in the fixed effects and/or random effects of the linear mixed model. The polynomial segments are explicitly constrained by side conditions for continuity and some smoothness at the points where they join. By using a reparameterization of this explicitly constrained linear mixed model, an implicitly constrained linear mixed model is constructed that simplifies implementation of fixed-knot regression splines. The proposed approach is relatively simple, handles splines in one variable or multiple variables, and can be easily programmed using existing commercial software such as SAS or S-plus. The method is illustrated using two examples: an analysis of longitudinal viral load data from a study of subjects with acute HIV-1 infection and an analysis of 24-hour ambulatory blood pressure profiles.

  13. Some consequences of assuming simple patterns for the treatment effect over time in a linear mixed model.

    Science.gov (United States)

    Bamia, Christina; White, Ian R; Kenward, Michael G

    2013-07-10

    Linear mixed models are often used for the analysis of data from clinical trials with repeated quantitative outcomes. This paper considers linear mixed models where a particular form is assumed for the treatment effect, in particular constant over time or proportional to time. For simplicity, we assume no baseline covariates and complete post-baseline measures, and we model arbitrary mean responses for the control group at each time. For the variance-covariance matrix, we consider an unstructured model, a random intercepts model and a random intercepts and slopes model. We show that the treatment effect estimator can be expressed as a weighted average of the observed time-specific treatment effects, with weights depending on the covariance structure and the magnitude of the estimated variance components. For an assumed constant treatment effect, under the random intercepts model, all weights are equal, but in the random intercepts and slopes and the unstructured models, we show that some weights can be negative: thus, the estimated treatment effect can be negative, even if all time-specific treatment effects are positive. Our results suggest that particular models for the treatment effect combined with particular covariance structures may result in estimated treatment effects of unexpected magnitude and/or direction. Methods are illustrated using a Parkinson's disease trial. Copyright © 2012 John Wiley & Sons, Ltd.

  14. Linear mixed models a practical guide using statistical software

    CERN Document Server

    West, Brady T; Galecki, Andrzej T

    2014-01-01

    Highly recommended by JASA, Technometrics, and other journals, the first edition of this bestseller showed how to easily perform complex linear mixed model (LMM) analyses via a variety of software programs. Linear Mixed Models: A Practical Guide Using Statistical Software, Second Edition continues to lead readers step by step through the process of fitting LMMs. This second edition covers additional topics on the application of LMMs that are valuable for data analysts in all fields. It also updates the case studies using the latest versions of the software procedures and provides up-to-date information on the options and features of the software procedures available for fitting LMMs in SAS, SPSS, Stata, R/S-plus, and HLM.New to the Second Edition A new chapter on models with crossed random effects that uses a case study to illustrate software procedures capable of fitting these models Power analysis methods for longitudinal and clustered study designs, including software options for power analyses and suggest...

  15. Confidence Intervals for Assessing Heterogeneity in Generalized Linear Mixed Models

    Science.gov (United States)

    Wagler, Amy E.

    2014-01-01

    Generalized linear mixed models are frequently applied to data with clustered categorical outcomes. The effect of clustering on the response is often difficult to practically assess partly because it is reported on a scale on which comparisons with regression parameters are difficult to make. This article proposes confidence intervals for…

  16. Markov and semi-Markov switching linear mixed models used to identify forest tree growth components.

    Science.gov (United States)

    Chaubert-Pereira, Florence; Guédon, Yann; Lavergne, Christian; Trottier, Catherine

    2010-09-01

    Tree growth is assumed to be mainly the result of three components: (i) an endogenous component assumed to be structured as a succession of roughly stationary phases separated by marked change points that are asynchronous among individuals, (ii) a time-varying environmental component assumed to take the form of synchronous fluctuations among individuals, and (iii) an individual component corresponding mainly to the local environment of each tree. To identify and characterize these three components, we propose to use semi-Markov switching linear mixed models, i.e., models that combine linear mixed models in a semi-Markovian manner. The underlying semi-Markov chain represents the succession of growth phases and their lengths (endogenous component) whereas the linear mixed models attached to each state of the underlying semi-Markov chain represent-in the corresponding growth phase-both the influence of time-varying climatic covariates (environmental component) as fixed effects, and interindividual heterogeneity (individual component) as random effects. In this article, we address the estimation of Markov and semi-Markov switching linear mixed models in a general framework. We propose a Monte Carlo expectation-maximization like algorithm whose iterations decompose into three steps: (i) sampling of state sequences given random effects, (ii) prediction of random effects given state sequences, and (iii) maximization. The proposed statistical modeling approach is illustrated by the analysis of successive annual shoots along Corsican pine trunks influenced by climatic covariates. © 2009, The International Biometric Society.

  17. Log-normal frailty models fitted as Poisson generalized linear mixed models.

    Science.gov (United States)

    Hirsch, Katharina; Wienke, Andreas; Kuss, Oliver

    2016-12-01

    The equivalence of a survival model with a piecewise constant baseline hazard function and a Poisson regression model has been known since decades. As shown in recent studies, this equivalence carries over to clustered survival data: A frailty model with a log-normal frailty term can be interpreted and estimated as a generalized linear mixed model with a binary response, a Poisson likelihood, and a specific offset. Proceeding this way, statistical theory and software for generalized linear mixed models are readily available for fitting frailty models. This gain in flexibility comes at the small price of (1) having to fix the number of pieces for the baseline hazard in advance and (2) having to "explode" the data set by the number of pieces. In this paper we extend the simulations of former studies by using a more realistic baseline hazard (Gompertz) and by comparing the model under consideration with competing models. Furthermore, the SAS macro %PCFrailty is introduced to apply the Poisson generalized linear mixed approach to frailty models. The simulations show good results for the shared frailty model. Our new %PCFrailty macro provides proper estimates, especially in case of 4 events per piece. The suggested Poisson generalized linear mixed approach for log-normal frailty models based on the %PCFrailty macro provides several advantages in the analysis of clustered survival data with respect to more flexible modelling of fixed and random effects, exact (in the sense of non-approximate) maximum likelihood estimation, and standard errors and different types of confidence intervals for all variance parameters. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  18. Linear mixed models a practical guide using statistical software

    CERN Document Server

    West, Brady T; Galecki, Andrzej T

    2006-01-01

    Simplifying the often confusing array of software programs for fitting linear mixed models (LMMs), Linear Mixed Models: A Practical Guide Using Statistical Software provides a basic introduction to primary concepts, notation, software implementation, model interpretation, and visualization of clustered and longitudinal data. This easy-to-navigate reference details the use of procedures for fitting LMMs in five popular statistical software packages: SAS, SPSS, Stata, R/S-plus, and HLM. The authors introduce basic theoretical concepts, present a heuristic approach to fitting LMMs based on bo

  19. Linear models for sound from supersonic reacting mixing layers

    Science.gov (United States)

    Chary, P. Shivakanth; Samanta, Arnab

    2016-12-01

    We perform a linearized reduced-order modeling of the aeroacoustic sound sources in supersonic reacting mixing layers to explore their sensitivities to some of the flow parameters in radiating sound. Specifically, we investigate the role of outer modes as the effective flow compressibility is raised, when some of these are expected to dominate over the traditional Kelvin-Helmholtz (K-H) -type central mode. Although the outer modes are known to be of lesser importance in the near-field mixing, how these radiate to the far-field is uncertain, on which we focus. On keeping the flow compressibility fixed, the outer modes are realized via biasing the respective mean densities of the fast (oxidizer) or slow (fuel) side. Here the mean flows are laminar solutions of two-dimensional compressible boundary layers with an imposed composite (turbulent) spreading rate, which we show to significantly alter the growth of instability waves by saturating them earlier, similar to in nonlinear calculations, achieved here via solving the linear parabolized stability equations. As the flow parameters are varied, instability of the slow modes is shown to be more sensitive to heat release, potentially exceeding equivalent central modes, as these modes yield relatively compact sound sources with lesser spreading of the mixing layer, when compared to the corresponding fast modes. In contrast, the radiated sound seems to be relatively unaffected when the mixture equivalence ratio is varied, except for a lean mixture which is shown to yield a pronounced effect on the slow mode radiation by reducing its modal growth.

  20. Modeling containment of large wildfires using generalized linear mixed-model analysis

    Science.gov (United States)

    Mark Finney; Isaac C. Grenfell; Charles W. McHugh

    2009-01-01

    Billions of dollars are spent annually in the United States to contain large wildland fires, but the factors contributing to suppression success remain poorly understood. We used a regression model (generalized linear mixed-model) to model containment probability of individual fires, assuming that containment was a repeated-measures problem (fixed effect) and...

  1. Functional Mixed Effects Model for Small Area Estimation.

    Science.gov (United States)

    Maiti, Tapabrata; Sinha, Samiran; Zhong, Ping-Shou

    2016-09-01

    Functional data analysis has become an important area of research due to its ability of handling high dimensional and complex data structures. However, the development is limited in the context of linear mixed effect models, and in particular, for small area estimation. The linear mixed effect models are the backbone of small area estimation. In this article, we consider area level data, and fit a varying coefficient linear mixed effect model where the varying coefficients are semi-parametrically modeled via B-splines. We propose a method of estimating the fixed effect parameters and consider prediction of random effects that can be implemented using a standard software. For measuring prediction uncertainties, we derive an analytical expression for the mean squared errors, and propose a method of estimating the mean squared errors. The procedure is illustrated via a real data example, and operating characteristics of the method are judged using finite sample simulation studies.

  2. Linear mixed-effects models for within-participant psychology experiments: an introductory tutorial and free, graphical user interface (LMMgui).

    Science.gov (United States)

    Magezi, David A

    2015-01-01

    Linear mixed-effects models (LMMs) are increasingly being used for data analysis in cognitive neuroscience and experimental psychology, where within-participant designs are common. The current article provides an introductory review of the use of LMMs for within-participant data analysis and describes a free, simple, graphical user interface (LMMgui). LMMgui uses the package lme4 (Bates et al., 2014a,b) in the statistical environment R (R Core Team).

  3. Short communication: Alteration of priors for random effects in Gaussian linear mixed model

    DEFF Research Database (Denmark)

    Vandenplas, Jérémie; Christensen, Ole Fredslund; Gengler, Nicholas

    2014-01-01

    such alterations. Therefore, the aim of this study was to propose a method to alter both the mean and (co)variance of the prior multivariate normal distributions of random effects of linear mixed models while using currently available software packages. The proposed method was tested on simulated examples with 3......, multiple-trait predictions of lactation yields, and Bayesian approaches integrating external information into genetic evaluations) need to alter both the mean and (co)variance of the prior distributions and, to our knowledge, most software packages available in the animal breeding community do not permit...... different software packages available in animal breeding. The examples showed the possibility of the proposed method to alter both the mean and (co)variance of the prior distributions with currently available software packages through the use of an extended data file and a user-supplied (co)variance matrix....

  4. A novel mixed-synchronization phenomenon in coupled Chua's circuits via non-fragile linear control

    International Nuclear Information System (INIS)

    Wang Jun-Wei; Ma Qing-Hua; Zeng Li

    2011-01-01

    Dynamical variables of coupled nonlinear oscillators can exhibit different synchronization patterns depending on the designed coupling scheme. In this paper, a non-fragile linear feedback control strategy with multiplicative controller gain uncertainties is proposed for realizing the mixed-synchronization of Chua's circuits connected in a drive-response configuration. In particular, in the mixed-synchronization regime, different state variables of the response system can evolve into complete synchronization, anti-synchronization and even amplitude death simultaneously with the drive variables for an appropriate choice of scaling matrix. Using Lyapunov stability theory, we derive some sufficient criteria for achieving global mixed-synchronization. It is shown that the desired non-fragile state feedback controller can be constructed by solving a set of linear matrix inequalities (LMIs). Numerical simulations are also provided to demonstrate the effectiveness of the proposed control approach. (general)

  5. Linear mixed-effects models to describe individual tree crown width for China-fir in Fujian Province, southeast China.

    Science.gov (United States)

    Hao, Xu; Yujun, Sun; Xinjie, Wang; Jin, Wang; Yao, Fu

    2015-01-01

    A multiple linear model was developed for individual tree crown width of Cunninghamia lanceolata (Lamb.) Hook in Fujian province, southeast China. Data were obtained from 55 sample plots of pure China-fir plantation stands. An Ordinary Linear Least Squares (OLS) regression was used to establish the crown width model. To adjust for correlations between observations from the same sample plots, we developed one level linear mixed-effects (LME) models based on the multiple linear model, which take into account the random effects of plots. The best random effects combinations for the LME models were determined by the Akaike's information criterion, the Bayesian information criterion and the -2logarithm likelihood. Heteroscedasticity was reduced by three residual variance functions: the power function, the exponential function and the constant plus power function. The spatial correlation was modeled by three correlation structures: the first-order autoregressive structure [AR(1)], a combination of first-order autoregressive and moving average structures [ARMA(1,1)], and the compound symmetry structure (CS). Then, the LME model was compared to the multiple linear model using the absolute mean residual (AMR), the root mean square error (RMSE), and the adjusted coefficient of determination (adj-R2). For individual tree crown width models, the one level LME model showed the best performance. An independent dataset was used to test the performance of the models and to demonstrate the advantage of calibrating LME models.

  6. Practical likelihood analysis for spatial generalized linear mixed models

    DEFF Research Database (Denmark)

    Bonat, W. H.; Ribeiro, Paulo Justiniano

    2016-01-01

    We investigate an algorithm for maximum likelihood estimation of spatial generalized linear mixed models based on the Laplace approximation. We compare our algorithm with a set of alternative approaches for two datasets from the literature. The Rhizoctonia root rot and the Rongelap are......, respectively, examples of binomial and count datasets modeled by spatial generalized linear mixed models. Our results show that the Laplace approximation provides similar estimates to Markov Chain Monte Carlo likelihood, Monte Carlo expectation maximization, and modified Laplace approximation. Some advantages...... of Laplace approximation include the computation of the maximized log-likelihood value, which can be used for model selection and tests, and the possibility to obtain realistic confidence intervals for model parameters based on profile likelihoods. The Laplace approximation also avoids the tuning...

  7. A property of assignment type mixed integer linear programming problems

    NARCIS (Netherlands)

    Benders, J.F.; van Nunen, J.A.E.E.

    1982-01-01

    In this paper we will proof that rather tight upper bounds can be given for the number of non-unique assignments that are achieved after solving the linear programming relaxation of some types of mixed integer linear assignment problems. Since in these cases the number of splitted assignments is

  8. Linear mixed-effects models to describe length-weight relationships for yellow croaker (Larimichthys Polyactis) along the north coast of China.

    Science.gov (United States)

    Ma, Qiuyun; Jiao, Yan; Ren, Yiping

    2017-01-01

    In this study, length-weight relationships and relative condition factors were analyzed for Yellow Croaker (Larimichthys polyactis) along the north coast of China. Data covered six regions from north to south: Yellow River Estuary, Coastal Waters of Northern Shandong, Jiaozhou Bay, Coastal Waters of Qingdao, Haizhou Bay, and South Yellow Sea. In total 3,275 individuals were collected during six years (2008, 2011-2015). One generalized linear model, two simply linear models and nine linear mixed effect models that applied the effects from regions and/or years to coefficient a and/or the exponent b were studied and compared. Among these twelve models, the linear mixed effect model with random effects from both regions and years fit the data best, with lowest Akaike information criterion value and mean absolute error. In this model, the estimated a was 0.0192, with 95% confidence interval 0.0178~0.0308, and the estimated exponent b was 2.917 with 95% confidence interval 2.731~2.945. Estimates for a and b with the random effects in intercept and coefficient from Region and Year, ranged from 0.013 to 0.023 and from 2.835 to 3.017, respectively. Both regions and years had effects on parameters a and b, while the effects from years were shown to be much larger than those from regions. Except for Coastal Waters of Northern Shandong, a decreased from north to south. Condition factors relative to reference years of 1960, 1986, 2005, 2007, 2008~2009 and 2010 revealed that the body shape of Yellow Croaker became thinner in recent years. Furthermore relative condition factors varied among months, years, regions and length. The values of a and relative condition factors decreased, when the environmental pollution became worse, therefore, length-weight relationships could be an indicator for the environment quality. Results from this study provided basic description of current condition of Yellow Croaker along the north coast of China.

  9. Stability Criterion of Linear Stochastic Systems Subject to Mixed H2/Passivity Performance

    Directory of Open Access Journals (Sweden)

    Cheung-Chieh Ku

    2015-01-01

    Full Text Available The H2 control scheme and passivity theory are applied to investigate the stability criterion of continuous-time linear stochastic system subject to mixed performance. Based on the stochastic differential equation, the stochastic behaviors can be described as multiplicative noise terms. For the considered system, the H2 control scheme is applied to deal with the problem on minimizing output energy. And the asymptotical stability of the system can be guaranteed under desired initial conditions. Besides, the passivity theory is employed to constrain the effect of external disturbance on the system. Moreover, the Itô formula and Lyapunov function are used to derive the sufficient conditions which are converted into linear matrix inequality (LMI form for applying convex optimization algorithm. Via solving the sufficient conditions, the state feedback controller can be established such that the asymptotical stability and mixed performance of the system are achieved in the mean square. Finally, the synchronous generator system is used to verify the effectiveness and applicability of the proposed design method.

  10. Mixed models, linear dependency, and identification in age-period-cohort models.

    Science.gov (United States)

    O'Brien, Robert M

    2017-07-20

    This paper examines the identification problem in age-period-cohort models that use either linear or categorically coded ages, periods, and cohorts or combinations of these parameterizations. These models are not identified using the traditional fixed effect regression model approach because of a linear dependency between the ages, periods, and cohorts. However, these models can be identified if the researcher introduces a single just identifying constraint on the model coefficients. The problem with such constraints is that the results can differ substantially depending on the constraint chosen. Somewhat surprisingly, age-period-cohort models that specify one or more of ages and/or periods and/or cohorts as random effects are identified. This is the case without introducing an additional constraint. I label this identification as statistical model identification and show how statistical model identification comes about in mixed models and why which effects are treated as fixed and which are treated as random can substantially change the estimates of the age, period, and cohort effects. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

  11. glmmTMB balances speed and flexibility among packages for Zero-inflated Generalized Linear Mixed Modeling

    DEFF Research Database (Denmark)

    Brooks, Mollie Elizabeth; Kristensen, Kasper; van Benthem, Koen J.

    2017-01-01

    Count data can be analyzed using generalized linear mixed models when observations are correlated in ways that require random effects. However, count data are often zero-inflated, containing more zeros than would be expected from the typical error distributions. We present a new package, glmm...

  12. Measuring the individual benefit of a medical or behavioral treatment using generalized linear mixed-effects models.

    Science.gov (United States)

    Diaz, Francisco J

    2016-10-15

    We propose statistical definitions of the individual benefit of a medical or behavioral treatment and of the severity of a chronic illness. These definitions are used to develop a graphical method that can be used by statisticians and clinicians in the data analysis of clinical trials from the perspective of personalized medicine. The method focuses on assessing and comparing individual effects of treatments rather than average effects and can be used with continuous and discrete responses, including dichotomous and count responses. The method is based on new developments in generalized linear mixed-effects models, which are introduced in this article. To illustrate, analyses of data from the Sequenced Treatment Alternatives to Relieve Depression clinical trial of sequences of treatments for depression and data from a clinical trial of respiratory treatments are presented. The estimation of individual benefits is also explained. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  13. Evaluation of a Linear Mixing Model to Retrieve Soil and Vegetation Temperatures of Land Targets

    International Nuclear Information System (INIS)

    Yang, Jinxin; Jia, Li; Cui, Yaokui; Zhou, Jie; Menenti, Massimo

    2014-01-01

    A simple linear mixing model of heterogeneous soil-vegetation system and retrieval of component temperatures from directional remote sensing measurements by inverting this model is evaluated in this paper using observations by a thermal camera. The thermal camera was used to obtain multi-angular TIR (Thermal Infra-Red) images over vegetable and orchard canopies. A whole thermal camera image was treated as a pixel of a satellite image to evaluate the model with the two-component system, i.e. soil and vegetation. The evaluation included two parts: evaluation of the linear mixing model and evaluation of the inversion of the model to retrieve component temperatures. For evaluation of the linear mixing model, the RMSE is 0.2 K between the observed and modelled brightness temperatures, which indicates that the linear mixing model works well under most conditions. For evaluation of the model inversion, the RMSE between the model retrieved and the observed vegetation temperatures is 1.6K, correspondingly, the RMSE between the observed and retrieved soil temperatures is 2.0K. According to the evaluation of the sensitivity of retrieved component temperatures on fractional cover, the linear mixing model gives more accurate retrieval accuracies for both soil and vegetation temperatures under intermediate fractional cover conditions

  14. An MCMC method for the evaluation of the Fisher information matrix for non-linear mixed effect models.

    Science.gov (United States)

    Riviere, Marie-Karelle; Ueckert, Sebastian; Mentré, France

    2016-10-01

    Non-linear mixed effect models (NLMEMs) are widely used for the analysis of longitudinal data. To design these studies, optimal design based on the expected Fisher information matrix (FIM) can be used instead of performing time-consuming clinical trial simulations. In recent years, estimation algorithms for NLMEMs have transitioned from linearization toward more exact higher-order methods. Optimal design, on the other hand, has mainly relied on first-order (FO) linearization to calculate the FIM. Although efficient in general, FO cannot be applied to complex non-linear models and with difficulty in studies with discrete data. We propose an approach to evaluate the expected FIM in NLMEMs for both discrete and continuous outcomes. We used Markov Chain Monte Carlo (MCMC) to integrate the derivatives of the log-likelihood over the random effects, and Monte Carlo to evaluate its expectation w.r.t. the observations. Our method was implemented in R using Stan, which efficiently draws MCMC samples and calculates partial derivatives of the log-likelihood. Evaluated on several examples, our approach showed good performance with relative standard errors (RSEs) close to those obtained by simulations. We studied the influence of the number of MC and MCMC samples and computed the uncertainty of the FIM evaluation. We also compared our approach to Adaptive Gaussian Quadrature, Laplace approximation, and FO. Our method is available in R-package MIXFIM and can be used to evaluate the FIM, its determinant with confidence intervals (CIs), and RSEs with CIs. © The Author 2016. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  15. Optimization of the time series NDVI-rainfall relationship using linear mixed-effects modeling for the anti-desertification area in the Beijing and Tianjin sandstorm source region

    Science.gov (United States)

    Wang, Jin; Sun, Tao; Fu, Anmin; Xu, Hao; Wang, Xinjie

    2018-05-01

    Degradation in drylands is a critically important global issue that threatens ecosystem and environmental in many ways. Researchers have tried to use remote sensing data and meteorological data to perform residual trend analysis and identify human-induced vegetation changes. However, complex interactions between vegetation and climate, soil units and topography have not yet been considered. Data used in the study included annual accumulated Moderate Resolution Imaging Spectroradiometer (MODIS) 250 m normalized difference vegetation index (NDVI) from 2002 to 2013, accumulated rainfall from September to August, digital elevation model (DEM) and soil units. This paper presents linear mixed-effect (LME) modeling methods for the NDVI-rainfall relationship. We developed linear mixed-effects models that considered the random effects of sample points nested in soil units for nested two-level modeling and single-level modeling of soil units and sample points, respectively. Additionally, three functions, including the exponential function (exp), the power function (power), and the constant plus power function (CPP), were tested to remove heterogeneity, and an additional three correlation structures, including the first-order autoregressive structure [AR(1)], a combination of first-order autoregressive and moving average structures [ARMA(1,1)] and the compound symmetry structure (CS), were used to address the spatiotemporal correlations. It was concluded that the nested two-level model considering both heteroscedasticity with (CPP) and spatiotemporal correlation with [ARMA(1,1)] showed the best performance (AMR = 0.1881, RMSE = 0.2576, adj- R 2 = 0.9593). Variations between soil units and sample points that may have an effect on the NDVI-rainfall relationship should be included in model structures, and linear mixed-effects modeling achieves this in an effective and accurate way.

  16. A Linear Mixed-Effects Model of Wireless Spectrum Occupancy

    Directory of Open Access Journals (Sweden)

    Pagadarai Srikanth

    2010-01-01

    Full Text Available We provide regression analysis-based statistical models to explain the usage of wireless spectrum across four mid-size US cities in four frequency bands. Specifically, the variations in spectrum occupancy across space, time, and frequency are investigated and compared between different sites within the city as well as with other cities. By applying the mixed-effects models, several conclusions are drawn that give the occupancy percentage and the ON time duration of the licensed signal transmission as a function of several predictor variables.

  17. Log-gamma linear-mixed effects models for multiple outcomes with application to a longitudinal glaucoma study

    Science.gov (United States)

    Zhang, Peng; Luo, Dandan; Li, Pengfei; Sharpsten, Lucie; Medeiros, Felipe A.

    2015-01-01

    Glaucoma is a progressive disease due to damage in the optic nerve with associated functional losses. Although the relationship between structural and functional progression in glaucoma is well established, there is disagreement on how this association evolves over time. In addressing this issue, we propose a new class of non-Gaussian linear-mixed models to estimate the correlations among subject-specific effects in multivariate longitudinal studies with a skewed distribution of random effects, to be used in a study of glaucoma. This class provides an efficient estimation of subject-specific effects by modeling the skewed random effects through the log-gamma distribution. It also provides more reliable estimates of the correlations between the random effects. To validate the log-gamma assumption against the usual normality assumption of the random effects, we propose a lack-of-fit test using the profile likelihood function of the shape parameter. We apply this method to data from a prospective observation study, the Diagnostic Innovations in Glaucoma Study, to present a statistically significant association between structural and functional change rates that leads to a better understanding of the progression of glaucoma over time. PMID:26075565

  18. Experimental Effects and Individual Differences in Linear Mixed Models: Estimating the Relationship between Spatial, Object, and Attraction Effects in Visual Attention

    Science.gov (United States)

    Kliegl, Reinhold; Wei, Ping; Dambacher, Michael; Yan, Ming; Zhou, Xiaolin

    2011-01-01

    Linear mixed models (LMMs) provide a still underused methodological perspective on combining experimental and individual-differences research. Here we illustrate this approach with two-rectangle cueing in visual attention (Egly et al., 1994). We replicated previous experimental cue-validity effects relating to a spatial shift of attention within an object (spatial effect), to attention switch between objects (object effect), and to the attraction of attention toward the display centroid (attraction effect), also taking into account the design-inherent imbalance of valid and other trials. We simultaneously estimated variance/covariance components of subject-related random effects for these spatial, object, and attraction effects in addition to their mean reaction times (RTs). The spatial effect showed a strong positive correlation with mean RT and a strong negative correlation with the attraction effect. The analysis of individual differences suggests that slow subjects engage attention more strongly at the cued location than fast subjects. We compare this joint LMM analysis of experimental effects and associated subject-related variances and correlations with two frequently used alternative statistical procedures. PMID:21833292

  19. A mixed integer linear program for an integrated fishery | Hasan ...

    African Journals Online (AJOL)

    ... and labour allocation of quota based integrated fisheries. We demonstrate the workability of our model with a numerical example and sensitivity analysis based on data obtained from one of the major fisheries in New Zealand. Keywords: mixed integer linear program, fishing, trawler scheduling, processing, quotas ORiON: ...

  20. Systematic analysis of the impact of mixing locality on Mixing-DAC linearity for multicarrier GSM

    NARCIS (Netherlands)

    Bechthum, E.; Radulov, G.I.; Briaire, J.; Geelen, G.; Roermund, van A.H.M.

    2012-01-01

    In an RF transmitter, the function of the mixer and the DAC can be combined in a single block: the Mixing-DAC. For the generation of multicarrier GSM signals in a basestation, high dynamic linearity is required, i.e. SFDR>85dBc, at high output signal frequency, i.e. ƒout ˜ 4GHz. This represents a

  1. Spatial generalised linear mixed models based on distances.

    Science.gov (United States)

    Melo, Oscar O; Mateu, Jorge; Melo, Carlos E

    2016-10-01

    Risk models derived from environmental data have been widely shown to be effective in delineating geographical areas of risk because they are intuitively easy to understand. We present a new method based on distances, which allows the modelling of continuous and non-continuous random variables through distance-based spatial generalised linear mixed models. The parameters are estimated using Markov chain Monte Carlo maximum likelihood, which is a feasible and a useful technique. The proposed method depends on a detrending step built from continuous or categorical explanatory variables, or a mixture among them, by using an appropriate Euclidean distance. The method is illustrated through the analysis of the variation in the prevalence of Loa loa among a sample of village residents in Cameroon, where the explanatory variables included elevation, together with maximum normalised-difference vegetation index and the standard deviation of normalised-difference vegetation index calculated from repeated satellite scans over time. © The Author(s) 2013.

  2. lmerTest Package: Tests in Linear Mixed Effects Models

    DEFF Research Database (Denmark)

    Kuznetsova, Alexandra; Brockhoff, Per B.; Christensen, Rune Haubo Bojesen

    2017-01-01

    One of the frequent questions by users of the mixed model function lmer of the lme4 package has been: How can I get p values for the F and t tests for objects returned by lmer? The lmerTest package extends the 'lmerMod' class of the lme4 package, by overloading the anova and summary functions...... by providing p values for tests for fixed effects. We have implemented the Satterthwaite's method for approximating degrees of freedom for the t and F tests. We have also implemented the construction of Type I - III ANOVA tables. Furthermore, one may also obtain the summary as well as the anova table using...

  3. Linear mixing model applied to AVHRR LAC data

    Science.gov (United States)

    Holben, Brent N.; Shimabukuro, Yosio E.

    1993-01-01

    A linear mixing model was applied to coarse spatial resolution data from the NOAA Advanced Very High Resolution Radiometer. The reflective component of the 3.55 - 3.93 microns channel was extracted and used with the two reflective channels 0.58 - 0.68 microns and 0.725 - 1.1 microns to run a Constraine Least Squares model to generate vegetation, soil, and shade fraction images for an area in the Western region of Brazil. The Landsat Thematic Mapper data covering the Emas National park region was used for estimating the spectral response of the mixture components and for evaluating the mixing model results. The fraction images were compared with an unsupervised classification derived from Landsat TM data acquired on the same day. The relationship between the fraction images and normalized difference vegetation index images show the potential of the unmixing techniques when using coarse resolution data for global studies.

  4. Mixed H∞ and passive control for linear switched systems via hybrid control approach

    Science.gov (United States)

    Zheng, Qunxian; Ling, Youzhu; Wei, Lisheng; Zhang, Hongbin

    2018-03-01

    This paper investigates the mixed H∞ and passive control problem for linear switched systems based on a hybrid control strategy. To solve this problem, first, a new performance index is proposed. This performance index can be viewed as the mixed weighted H∞ and passivity performance. Then, the hybrid controllers are used to stabilise the switched systems. The hybrid controllers consist of dynamic output-feedback controllers for every subsystem and state updating controllers at the switching instant. The design of state updating controllers not only depends on the pre-switching subsystem and the post-switching subsystem, but also depends on the measurable output signal. The hybrid controllers proposed in this paper can include some existing ones as special cases. Combine the multiple Lyapunov functions approach with the average dwell time technique, new sufficient conditions are obtained. Under the new conditions, the closed-loop linear switched systems are globally uniformly asymptotically stable with a mixed H∞ and passivity performance index. Moreover, the desired hybrid controllers can be constructed by solving a set of linear matrix inequalities. Finally, a numerical example and a practical example are given.

  5. Image quality optimization and evaluation of linearly mixed images in dual-source, dual-energy CT

    International Nuclear Information System (INIS)

    Yu Lifeng; Primak, Andrew N.; Liu Xin; McCollough, Cynthia H.

    2009-01-01

    In dual-source dual-energy CT, the images reconstructed from the low- and high-energy scans (typically at 80 and 140 kV, respectively) can be mixed together to provide a single set of non-material-specific images for the purpose of routine diagnostic interpretation. Different from the material-specific information that may be obtained from the dual-energy scan data, the mixed images are created with the purpose of providing the interpreting physician a single set of images that have an appearance similar to that in single-energy images acquired at the same total radiation dose. In this work, the authors used a phantom study to evaluate the image quality of linearly mixed images in comparison to single-energy CT images, assuming the same total radiation dose and taking into account the effect of patient size and the dose partitioning between the low-and high-energy scans. The authors first developed a method to optimize the quality of the linearly mixed images such that the single-energy image quality was compared to the best-case image quality of the dual-energy mixed images. Compared to 80 kV single-energy images for the same radiation dose, the iodine CNR in dual-energy mixed images was worse for smaller phantom sizes. However, similar noise and similar or improved iodine CNR relative to 120 kV images could be achieved for dual-energy mixed images using the same total radiation dose over a wide range of patient sizes (up to 45 cm lateral thorax dimension). Thus, for adult CT practices, which primarily use 120 kV scanning, the use of dual-energy CT for the purpose of material-specific imaging can also produce a set of non-material-specific images for routine diagnostic interpretation that are of similar or improved quality relative to single-energy 120 kV scans.

  6. Application of Linear Mixed-Effects Models in Human Neuroscience Research: A Comparison with Pearson Correlation in Two Auditory Electrophysiology Studies.

    Science.gov (United States)

    Koerner, Tess K; Zhang, Yang

    2017-02-27

    Neurophysiological studies are often designed to examine relationships between measures from different testing conditions, time points, or analysis techniques within the same group of participants. Appropriate statistical techniques that can take into account repeated measures and multivariate predictor variables are integral and essential to successful data analysis and interpretation. This work implements and compares conventional Pearson correlations and linear mixed-effects (LME) regression models using data from two recently published auditory electrophysiology studies. For the specific research questions in both studies, the Pearson correlation test is inappropriate for determining strengths between the behavioral responses for speech-in-noise recognition and the multiple neurophysiological measures as the neural responses across listening conditions were simply treated as independent measures. In contrast, the LME models allow a systematic approach to incorporate both fixed-effect and random-effect terms to deal with the categorical grouping factor of listening conditions, between-subject baseline differences in the multiple measures, and the correlational structure among the predictor variables. Together, the comparative data demonstrate the advantages as well as the necessity to apply mixed-effects models to properly account for the built-in relationships among the multiple predictor variables, which has important implications for proper statistical modeling and interpretation of human behavior in terms of neural correlates and biomarkers.

  7. Bayesian prediction of spatial count data using generalized linear mixed models

    DEFF Research Database (Denmark)

    Christensen, Ole Fredslund; Waagepetersen, Rasmus Plenge

    2002-01-01

    Spatial weed count data are modeled and predicted using a generalized linear mixed model combined with a Bayesian approach and Markov chain Monte Carlo. Informative priors for a data set with sparse sampling are elicited using a previously collected data set with extensive sampling. Furthermore, ...

  8. Analysis of 24-Hour Ambulatory Blood Pressure Monitoring Data using Orthonormal Polynomials in the Linear Mixed Model

    OpenAIRE

    Edwards, Lloyd J.; Simpson, Sean L.

    2010-01-01

    The use of 24-hour ambulatory blood pressure monitoring (ABPM) in clinical practice and observational epidemiological studies has grown considerably in the past 25 years. ABPM is a very effective technique for assessing biological, environmental, and drug effects on blood pressure. In order to enhance the effectiveness of ABPM for clinical and observational research studies via analytical and graphical results, developing alternative data analysis approaches are important. The linear mixed mo...

  9. Visual, Algebraic and Mixed Strategies in Visually Presented Linear Programming Problems.

    Science.gov (United States)

    Shama, Gilli; Dreyfus, Tommy

    1994-01-01

    Identified and classified solution strategies of (n=49) 10th-grade students who were presented with linear programming problems in a predominantly visual setting in the form of a computerized game. Visual strategies were developed more frequently than either algebraic or mixed strategies. Appendix includes questionnaires. (Contains 11 references.)…

  10. Linear dose dependence of ion beam mixing of metals on Si

    International Nuclear Information System (INIS)

    Poker, D.B.; Appleton, B.R.

    1985-01-01

    These experiments were conducted to determine the dose dependences of ion beam mixing of various metal-silicon couples. V/Si and Cr/Si were included because these couples were previously suspected of exhibiting a linear dose dependence. Pd/Si was chosen because it had been reported as exhibiting only the square root dependence. Samples were cut from wafers of (100) n-type Si. The samples were cleaned in organic solvents, etched in hydrofluoric acid, and rinsed with methanol before mounting in an oil-free vacuum system for thin-film deposition. Films of Au, V, Cr, or Pd were evaporated onto the Si samples with a nominal deposition rate of 10 A/s. The thicknesses were large compared with those usually used to measure ion beam mixing and were used to ensure that conditions of unlimited supply were met. Samples were mixed with Si ions ranging in energy from 300 to 375 keV, chosen to produce ion ranges that significantly exceeded the metal film depth. Si was used as the mixing ion to prevent impurity doping of the Si substrate and to exclude a background signal from the Rutherford backscattering (RBS) spectra. Samples were mixed at room temperature, with the exception of the Au/Si samples, which were mixed at liquid nitrogen temperature. The samples were alternately mixed and analyzed in situ without exposure to atmosphere between mixing doses. The compositional distributions after mixing were measured using RBS of 2.5-MeV 4 He atoms

  11. On the origin of the mixed alkali effect on indentation in silicate glasses

    DEFF Research Database (Denmark)

    Kjeldsen, Jonas; Smedskjær, Morten Mattrup; Mauro, J. C.

    2014-01-01

    The compositional scaling of Vickers hardness (Hv) in mixed alkali oxide glasses manifests itself as a positive deviation from linearity as a function of the network modifier/modifier ratio, with a maximum deviation at the ratio of 1:1. In this work, we investigate the link between the indentation...... deformation processes (elastic deformation, plastic deformation, and densification) and Hv in two mixed sodium–potassium silicate glass series. We show that the mixed alkali effect in Hv originates from the nonlinear scaling of the resistance to plastic deformation. We thus confirm a direct relation between...... the resistance to plastic flow and Hv in mixed modifier glasses. Furthermore, we find that the mixed alkali effect also manifests itself as a positive deviation from linearity in the compositional scaling of density for glasses with high alumina content. This trend could be linked to a compaction of the network...

  12. Mixed integer linear programming model for dynamic supplier selection problem considering discounts

    Directory of Open Access Journals (Sweden)

    Adi Wicaksono Purnawan

    2018-01-01

    Full Text Available Supplier selection is one of the most important elements in supply chain management. This function involves evaluation of many factors such as, material costs, transportation costs, quality, delays, supplier capacity, storage capacity and others. Each of these factors varies with time, therefore, supplier identified for one period is not necessarily be same for the next period to supply the same product. So, mixed integer linear programming (MILP was developed to overcome the dynamic supplier selection problem (DSSP. In this paper, a mixed integer linear programming model is built to solve the lot-sizing problem with multiple suppliers, multiple periods, multiple products and quantity discounts. The buyer has to make a decision for some products which will be supplied by some suppliers for some periods cosidering by discount. To validate the MILP model with randomly generated data. The model is solved by Lingo 16.

  13. The Solution Set Characterization and Error Bound for the Extended Mixed Linear Complementarity Problem

    Directory of Open Access Journals (Sweden)

    Hongchun Sun

    2012-01-01

    Full Text Available For the extended mixed linear complementarity problem (EML CP, we first present the characterization of the solution set for the EMLCP. Based on this, its global error bound is also established under milder conditions. The results obtained in this paper can be taken as an extension for the classical linear complementarity problems.

  14. Predicting the multi-domain progression of Parkinson's disease: a Bayesian multivariate generalized linear mixed-effect model.

    Science.gov (United States)

    Wang, Ming; Li, Zheng; Lee, Eun Young; Lewis, Mechelle M; Zhang, Lijun; Sterling, Nicholas W; Wagner, Daymond; Eslinger, Paul; Du, Guangwei; Huang, Xuemei

    2017-09-25

    It is challenging for current statistical models to predict clinical progression of Parkinson's disease (PD) because of the involvement of multi-domains and longitudinal data. Past univariate longitudinal or multivariate analyses from cross-sectional trials have limited power to predict individual outcomes or a single moment. The multivariate generalized linear mixed-effect model (GLMM) under the Bayesian framework was proposed to study multi-domain longitudinal outcomes obtained at baseline, 18-, and 36-month. The outcomes included motor, non-motor, and postural instability scores from the MDS-UPDRS, and demographic and standardized clinical data were utilized as covariates. The dynamic prediction was performed for both internal and external subjects using the samples from the posterior distributions of the parameter estimates and random effects, and also the predictive accuracy was evaluated based on the root of mean square error (RMSE), absolute bias (AB) and the area under the receiver operating characteristic (ROC) curve. First, our prediction model identified clinical data that were differentially associated with motor, non-motor, and postural stability scores. Second, the predictive accuracy of our model for the training data was assessed, and improved prediction was gained in particularly for non-motor (RMSE and AB: 2.89 and 2.20) compared to univariate analysis (RMSE and AB: 3.04 and 2.35). Third, the individual-level predictions of longitudinal trajectories for the testing data were performed, with ~80% observed values falling within the 95% credible intervals. Multivariate general mixed models hold promise to predict clinical progression of individual outcomes in PD. The data was obtained from Dr. Xuemei Huang's NIH grant R01 NS060722 , part of NINDS PD Biomarker Program (PDBP). All data was entered within 24 h of collection to the Data Management Repository (DMR), which is publically available ( https://pdbp.ninds.nih.gov/data-management ).

  15. Evaluating significance in linear mixed-effects models in R.

    Science.gov (United States)

    Luke, Steven G

    2017-08-01

    Mixed-effects models are being used ever more frequently in the analysis of experimental data. However, in the lme4 package in R the standards for evaluating significance of fixed effects in these models (i.e., obtaining p-values) are somewhat vague. There are good reasons for this, but as researchers who are using these models are required in many cases to report p-values, some method for evaluating the significance of the model output is needed. This paper reports the results of simulations showing that the two most common methods for evaluating significance, using likelihood ratio tests and applying the z distribution to the Wald t values from the model output (t-as-z), are somewhat anti-conservative, especially for smaller sample sizes. Other methods for evaluating significance, including parametric bootstrapping and the Kenward-Roger and Satterthwaite approximations for degrees of freedom, were also evaluated. The results of these simulations suggest that Type 1 error rates are closest to .05 when models are fitted using REML and p-values are derived using the Kenward-Roger or Satterthwaite approximations, as these approximations both produced acceptable Type 1 error rates even for smaller samples.

  16. Monte Carlo simulation of OLS and linear mixed model inference of phenotypic effects on gene expression.

    Science.gov (United States)

    Walker, Jeffrey A

    2016-01-01

    downward biased standard errors and inflated coefficients. The Monte Carlo simulation of error rates shows highly inflated Type I error from the GLS test and slightly inflated Type I error from the GEE test. By contrast, Type I error for all OLS tests are at the nominal level. The permutation F -tests have ∼1.9X the power of the other OLS tests. This increased power comes at a cost of high sign error (∼10%) if tested on small effects. The apparently replicated pattern of well-being effects on gene expression is most parsimoniously explained as "correlated noise" due to the geometry of multiple regression. The GLS for fixed effects with correlated error, or any linear mixed model for estimating fixed effects in designs with many repeated measures or outcomes, should be used cautiously because of the inflated Type I and M error. By contrast, all OLS tests perform well, and the permutation F -tests have superior performance, including moderate power for very small effects.

  17. Monte Carlo simulation of OLS and linear mixed model inference of phenotypic effects on gene expression

    Directory of Open Access Journals (Sweden)

    Jeffrey A. Walker

    2016-10-01

    distributions suggest that the GLS results in downward biased standard errors and inflated coefficients. The Monte Carlo simulation of error rates shows highly inflated Type I error from the GLS test and slightly inflated Type I error from the GEE test. By contrast, Type I error for all OLS tests are at the nominal level. The permutation F-tests have ∼1.9X the power of the other OLS tests. This increased power comes at a cost of high sign error (∼10% if tested on small effects. Discussion The apparently replicated pattern of well-being effects on gene expression is most parsimoniously explained as “correlated noise” due to the geometry of multiple regression. The GLS for fixed effects with correlated error, or any linear mixed model for estimating fixed effects in designs with many repeated measures or outcomes, should be used cautiously because of the inflated Type I and M error. By contrast, all OLS tests perform well, and the permutation F-tests have superior performance, including moderate power for very small effects.

  18. An SDP Approach for Multiperiod Mixed 0–1 Linear Programming Models with Stochastic Dominance Constraints for Risk Management

    DEFF Research Database (Denmark)

    Escudero, Laureano F.; Monge, Juan Francisco; Morales, Dolores Romero

    2015-01-01

    In this paper we consider multiperiod mixed 0–1 linear programming models under uncertainty. We propose a risk averse strategy using stochastic dominance constraints (SDC) induced by mixed-integer linear recourse as the risk measure. The SDC strategy extends the existing literature to the multist...

  19. Non-linear mixed effects modeling - from methodology and software development to driving implementation in drug development science.

    Science.gov (United States)

    Pillai, Goonaseelan Colin; Mentré, France; Steimer, Jean-Louis

    2005-04-01

    Few scientific contributions have made significant impact unless there was a champion who had the vision to see the potential for its use in seemingly disparate areas-and who then drove active implementation. In this paper, we present a historical summary of the development of non-linear mixed effects (NLME) modeling up to the more recent extensions of this statistical methodology. The paper places strong emphasis on the pivotal role played by Lewis B. Sheiner (1940-2004), who used this statistical methodology to elucidate solutions to real problems identified in clinical practice and in medical research and on how he drove implementation of the proposed solutions. A succinct overview of the evolution of the NLME modeling methodology is presented as well as ideas on how its expansion helped to provide guidance for a more scientific view of (model-based) drug development that reduces empiricism in favor of critical quantitative thinking and decision making.

  20. Effects of the ρ - ω mixing interaction in relativistic models

    International Nuclear Information System (INIS)

    Menezes, D.P.; Providencia, C.

    2003-01-01

    The effects of the ρ-ω mixing term in infinite nuclear matter and in finite nuclei are investigated with the non-linear Walecka model in a Thomas-Fermi approximation. For infinite nuclear matter the influence of the mixing term in the binding energy calculated with the NL3 and TM1 parametrizations can be neglected. Its influence on the symmetry energy is only felt for the TM1 with a unrealistically large value for the mixing term strength. For finite nuclei the contribution of the isospin mixing term is very large as compared with the expected value to solve the Nolen-Schiffer anomaly

  1. Linear Optimization Techniques for Product-Mix of Paints Production in Nigeria

    Directory of Open Access Journals (Sweden)

    Sulaimon Olanrewaju Adebiyi

    2014-02-01

    Full Text Available Many paint producers in Nigeria do not lend themselves to flexible production process which is important for them to manage the use of resources for effective optimal production. These goals can be achieved through the application of optimization models in their resources allocation and utilisation. This research focuses on linear optimization for achieving product- mix optimization in terms of the product identification and the right quantity in paint production in Nigeria for better profit and optimum firm performance. The computational experiments in this research contains data and information on the units item costs, unit contribution margin, maximum resources capacity, individual products absorption rate and other constraints that are particular to each of the five products produced in the company employed as case study. In data analysis, linear programming model was employed with the aid LINDO 11 software to analyse the data. The result has showed that only two out of the five products under consideration are profitable. It also revealed the rate to which the company needs to reduce cost incurred on the three other products before making them profitable for production.

  2. Spoofing cyber attack detection in probe-based traffic monitoring systems using mixed integer linear programming

    KAUST Repository

    Canepa, Edward S.

    2013-01-01

    Traffic sensing systems rely more and more on user generated (insecure) data, which can pose a security risk whenever the data is used for traffic flow control. In this article, we propose a new formulation for detecting malicious data injection in traffic flow monitoring systems by using the underlying traffic flow model. The state of traffic is modeled by the Lighthill-Whitham- Richards traffic flow model, which is a first order scalar conservation law with concave flux function. Given a set of traffic flow data, we show that the constraints resulting from this partial differential equation are mixed integer linear inequalities for some decision variable. We use this fact to pose the problem of detecting spoofing cyber-attacks in probe-based traffic flow information systems as mixed integer linear feasibility problem. The resulting framework can be used to detect spoofing attacks in real time, or to evaluate the worst-case effects of an attack offline. A numerical implementation is performed on a cyber-attack scenario involving experimental data from the Mobile Century experiment and the Mobile Millennium system currently operational in Northern California. © 2013 IEEE.

  3. Spoofing cyber attack detection in probe-based traffic monitoring systems using mixed integer linear programming

    KAUST Repository

    Canepa, Edward S.

    2013-09-01

    Traffic sensing systems rely more and more on user generated (insecure) data, which can pose a security risk whenever the data is used for traffic flow control. In this article, we propose a new formulation for detecting malicious data injection in traffic flow monitoring systems by using the underlying traffic flow model. The state of traffic is modeled by the Lighthill- Whitham-Richards traffic flow model, which is a first order scalar conservation law with concave flux function. Given a set of traffic flow data generated by multiple sensors of different types, we show that the constraints resulting from this partial differential equation are mixed integer linear inequalities for a specific decision variable. We use this fact to pose the problem of detecting spoofing cyber attacks in probe-based traffic flow information systems as mixed integer linear feasibility problem. The resulting framework can be used to detect spoofing attacks in real time, or to evaluate the worst-case effects of an attack offliine. A numerical implementation is performed on a cyber attack scenario involving experimental data from the Mobile Century experiment and the Mobile Millennium system currently operational in Northern California. © American Institute of Mathematical Sciences.

  4. Light Scattering Study of Mixed Micelles Made from Elastin-Like Polypeptide Linear Chains and Trimers

    Science.gov (United States)

    Terrano, Daniel; Tsuper, Ilona; Maraschky, Adam; Holland, Nolan; Streletzky, Kiril

    Temperature sensitive nanoparticles were generated from a construct (H20F) of three chains of elastin-like polypeptides (ELP) linked to a negatively charged foldon domain. This ELP system was mixed at different ratios with linear chains of ELP (H40L) which lacks the foldon domain. The mixed system is soluble at room temperature and at a transition temperature (Tt) will form swollen micelles with the hydrophobic linear chains hidden inside. This system was studied using depolarized dynamic light scattering (DDLS) and static light scattering (SLS) to determine the size, shape, and internal structure of the mixed micelles. The mixed micelle in equal parts of H20F and H40L show a constant apparent hydrodynamic radius of 40-45 nm at the concentration window from 25:25 to 60:60 uM (1:1 ratio). At a fixed 50 uM concentration of the H20F, varying H40L concentration from 5 to 80 uM resulted in a linear growth in the hydrodynamic radius from about 11 to about 62 nm, along with a 1000-fold increase in VH signal. A possible simple model explaining the growth of the swollen micelles is considered. Lastly, the VH signal can indicate elongation in the geometry of the particle or could possibly be a result from anisotropic properties from the core of the micelle. SLS was used to study the molecular weight, and the radius of gyration of the micelle to help identify the structure and morphology of mixed micelles and the tangible cause of the VH signal.

  5. Multi-disease analysis of maternal antibody decay using non-linear mixed models accounting for censoring.

    Science.gov (United States)

    Goeyvaerts, Nele; Leuridan, Elke; Faes, Christel; Van Damme, Pierre; Hens, Niel

    2015-09-10

    Biomedical studies often generate repeated measures of multiple outcomes on a set of subjects. It may be of interest to develop a biologically intuitive model for the joint evolution of these outcomes while assessing inter-subject heterogeneity. Even though it is common for biological processes to entail non-linear relationships, examples of multivariate non-linear mixed models (MNMMs) are still fairly rare. We contribute to this area by jointly analyzing the maternal antibody decay for measles, mumps, rubella, and varicella, allowing for a different non-linear decay model for each infectious disease. We present a general modeling framework to analyze multivariate non-linear longitudinal profiles subject to censoring, by combining multivariate random effects, non-linear growth and Tobit regression. We explore the hypothesis of a common infant-specific mechanism underlying maternal immunity using a pairwise correlated random-effects approach and evaluating different correlation matrix structures. The implied marginal correlation between maternal antibody levels is estimated using simulations. The mean duration of passive immunity was less than 4 months for all diseases with substantial heterogeneity between infants. The maternal antibody levels against rubella and varicella were found to be positively correlated, while little to no correlation could be inferred for the other disease pairs. For some pairs, computational issues occurred with increasing correlation matrix complexity, which underlines the importance of further developing estimation methods for MNMMs. Copyright © 2015 John Wiley & Sons, Ltd.

  6. Linear and Weakly Nonlinear Instability of Shallow Mixing Layers with Variable Friction

    Directory of Open Access Journals (Sweden)

    Irina Eglite

    2018-01-01

    Full Text Available Linear and weakly nonlinear instability of shallow mixing layers is analysed in the present paper. It is assumed that the resistance force varies in the transverse direction. Linear stability problem is solved numerically using collocation method. It is shown that the increase in the ratio of the friction coefficients in the main channel to that in the floodplain has a stabilizing influence on the flow. The amplitude evolution equation for the most unstable mode (the complex Ginzburg–Landau equation is derived from the shallow water equations under the rigid-lid assumption. Results of numerical calculations are presented.

  7. Estimating a graphical intra-class correlation coefficient (GICC) using multivariate probit-linear mixed models.

    Science.gov (United States)

    Yue, Chen; Chen, Shaojie; Sair, Haris I; Airan, Raag; Caffo, Brian S

    2015-09-01

    Data reproducibility is a critical issue in all scientific experiments. In this manuscript, the problem of quantifying the reproducibility of graphical measurements is considered. The image intra-class correlation coefficient (I2C2) is generalized and the graphical intra-class correlation coefficient (GICC) is proposed for such purpose. The concept for GICC is based on multivariate probit-linear mixed effect models. A Markov Chain Monte Carlo EM (mcm-cEM) algorithm is used for estimating the GICC. Simulation results with varied settings are demonstrated and our method is applied to the KIRBY21 test-retest dataset.

  8. Phase mixing of transverse oscillations in the linear and nonlinear regimes for IFR relativistic electron beam propagation

    International Nuclear Information System (INIS)

    Shokair, I.R.

    1991-01-01

    Phase mixing of transverse oscillations changes the nature of the ion hose instability from an absolute to a convective instability. The stronger the phase mixing, the faster an electron beam reaches equilibrium with the guiding ion channel. This is important for long distance propagation of relativistic electron beams where it is desired that transverse oscillations phase mix within a few betatron wavelengths of injection and subsequently an equilibrium is reached with no further beam emittance growth. In the linear regime phase mixing is well understood and results in asymptotic decay of transverse oscillations as 1/Z 2 for a Gaussian beam and channel system, Z being the axial distance measured in betatron wavelengths. In the nonlinear regime (which is likely mode of propagation for long pulse beams) results of the spread mass model indicate that phase mixing is considerably weaker than in the regime. In this paper we consider this problem of phase mixing in the nonlinear regime. Results of the spread mass model will be shown along with a simple analysis of phase mixing for multiple oscillator models. Particle simulations also indicate that phase mixing is weaker in nonlinear regime than in the linear regime. These results will also be shown. 3 refs., 4 figs

  9. Superradiance Effects in the Linear and Nonlinear Optical Response of Quantum Dot Molecules

    Science.gov (United States)

    Sitek, A.; Machnikowski, P.

    2008-11-01

    We calculate the linear optical response from a single quantum dot molecule and the nonlinear, four-wave-mixing response from an inhomogeneously broadened ensemble of such molecules. We show that both optical signals are affected by the coupling-dependent superradiance effect and by optical interference between the two polarizations. As a result, the linear and nonlinear responses are not identical.

  10. Low-sensitivity, low-bounce, high-linearity current-controlled oscillator suitable for single-supply mixed-mode instrumentation system.

    Science.gov (United States)

    Hwang, Yuh-Shyan; Kung, Che-Min; Lin, Ho-Cheng; Chen, Jiann-Jong

    2009-02-01

    A low-sensitivity, low-bounce, high-linearity current-controlled oscillator (CCO) suitable for a single-supply mixed-mode instrumentation system is designed and proposed in this paper. The designed CCO can be operated at low voltage (2 V). The power bounce and ground bounce generated by this CCO is less than 7 mVpp when the power-line parasitic inductance is increased to 100 nH to demonstrate the effect of power bounce and ground bounce. The power supply noise caused by the proposed CCO is less than 0.35% in reference to the 2 V supply voltage. The average conversion ratio KCCO is equal to 123.5 GHz/A. The linearity of conversion ratio is high and its tolerance is within +/-1.2%. The sensitivity of the proposed CCO is nearly independent of the power supply voltage, which is less than a conventional current-starved oscillator. The performance of the proposed CCO has been compared with the current-starved oscillator. It is shown that the proposed CCO is suitable for single-supply mixed-mode instrumentation systems.

  11. Estimate the time varying brain receptor occupancy in PET imaging experiments using non-linear fixed and mixed effect modeling approach

    International Nuclear Information System (INIS)

    Zamuner, Stefano; Gomeni, Roberto; Bye, Alan

    2002-01-01

    Positron-Emission Tomography (PET) is an imaging technology currently used in drug development as a non-invasive measure of drug distribution and interaction with biochemical target system. The level of receptor occupancy achieved by a compound can be estimated by comparing time-activity measurements in an experiment done using tracer alone with the activity measured when the tracer is given following administration of unlabelled compound. The effective use of this surrogate marker as an enabling tool for drug development requires the definition of a model linking the brain receptor occupancy with the fluctuation of plasma concentrations. However, the predictive performance of such a model is strongly related to the precision on the estimate of receptor occupancy evaluated in PET scans collected at different times following drug treatment. Several methods have been proposed for the analysis and the quantification of the ligand-receptor interactions investigated from PET data. The aim of the present study is to evaluate alternative parameter estimation strategies based on the use of non-linear mixed effect models allowing to account for intra and inter-subject variability on the time-activity and for covariates potentially explaining this variability. A comparison of the different modeling approaches is presented using real data. The results of this comparison indicates that the mixed effect approach with a primary model partitioning the variance in term of Inter-Individual Variability (IIV) and Inter-Occasion Variability (IOV) and a second stage model relating the changes on binding potential to the dose of unlabelled drug is definitely the preferred approach

  12. Analysis of correlated count data using generalised linear mixed models exemplified by field data on aggressive behaviour of boars

    Directory of Open Access Journals (Sweden)

    N. Mielenz

    2015-01-01

    Full Text Available Population-averaged and subject-specific models are available to evaluate count data when repeated observations per subject are present. The latter are also known in the literature as generalised linear mixed models (GLMM. In GLMM repeated measures are taken into account explicitly through random animal effects in the linear predictor. In this paper the relevant GLMMs are presented based on conditional Poisson or negative binomial distribution of the response variable for given random animal effects. Equations for the repeatability of count data are derived assuming normal distribution and logarithmic gamma distribution for the random animal effects. Using count data on aggressive behaviour events of pigs (barrows, sows and boars in mixed-sex housing, we demonstrate the use of the Poisson »log-gamma intercept«, the Poisson »normal intercept« and the »normal intercept« model with negative binomial distribution. Since not all count data can definitely be seen as Poisson or negative-binomially distributed, questions of model selection and model checking are examined. Emanating from the example, we also interpret the least squares means, estimated on the link as well as the response scale. Options provided by the SAS procedure NLMIXED for estimating model parameters and for estimating marginal expected values are presented.

  13. Mixed problems for linear symmetric hyperbolic systems with characteristic boundary conditions

    International Nuclear Information System (INIS)

    Secchi, P.

    1994-01-01

    We consider the initial-boundary value problem for symmetric hyperbolic systems with characteristic boundary of constant multiplicity. In the linear case we give some results about the existence of regular solutions in suitable functions spaces which take in account the loss of regularity in the normal direction to the characteristic boundary. We also consider the equations of ideal magneto-hydrodynamics under perfectly conducting wall boundary conditions and give some results about the solvability of such mixed problem. (author). 16 refs

  14. Analyzing longitudinal data with the linear mixed models procedure in SPSS.

    Science.gov (United States)

    West, Brady T

    2009-09-01

    Many applied researchers analyzing longitudinal data share a common misconception: that specialized statistical software is necessary to fit hierarchical linear models (also known as linear mixed models [LMMs], or multilevel models) to longitudinal data sets. Although several specialized statistical software programs of high quality are available that allow researchers to fit these models to longitudinal data sets (e.g., HLM), rapid advances in general purpose statistical software packages have recently enabled analysts to fit these same models when using preferred packages that also enable other more common analyses. One of these general purpose statistical packages is SPSS, which includes a very flexible and powerful procedure for fitting LMMs to longitudinal data sets with continuous outcomes. This article aims to present readers with a practical discussion of how to analyze longitudinal data using the LMMs procedure in the SPSS statistical software package.

  15. Mixed-Integer-Linear-Programming-Based Energy Management System for Hybrid PV-Wind-Battery Microgrids

    DEFF Research Database (Denmark)

    Hernández, Adriana Carolina Luna; Aldana, Nelson Leonardo Diaz; Graells, Moises

    2017-01-01

    -side strategy, defined as a general mixed-integer linear programming by taking into account two stages for proper charging of the storage units. This model is considered as a deterministic problem that aims to minimize operating costs and promote self-consumption based on 24-hour ahead forecast data...

  16. Response Surface Method and Linear Programming in the development of mixed nectar of acceptability high and minimum cost

    Directory of Open Access Journals (Sweden)

    Enrique López Calderón

    2012-06-01

    Full Text Available The aim of this study was to develop a high acceptability mixed nectar and low cost. To obtain the nectar mixed considered different amounts of passion fruit, sweet pepino, sucrose, and completing 100% with water, following a two-stage design: screening (using a design of type 2 3 + 4 center points and optimization (using a design of type 2 2 + 2*2 + 4 center points; stages that allow explore a high acceptability formulation. Then we used the technique of Linear Programming to minimize the cost of high acceptability nectar. Result of this process was obtained a mixed nectar optimal acceptability (score of 7, when the formulation is between 9 and 14% of passion fruit, 4 and 5% of sucrose, 73.5% of sweet pepino juice and filling with water to the 100%. Linear Programming possible reduced the cost of nectar mixed with optimal acceptability at S/.174 for a production of 1000 L/day.

  17. Longitudinal Data Analyses Using Linear Mixed Models in SPSS: Concepts, Procedures and Illustrations

    Directory of Open Access Journals (Sweden)

    Daniel T. L. Shek

    2011-01-01

    Full Text Available Although different methods are available for the analyses of longitudinal data, analyses based on generalized linear models (GLM are criticized as violating the assumption of independence of observations. Alternatively, linear mixed models (LMM are commonly used to understand changes in human behavior over time. In this paper, the basic concepts surrounding LMM (or hierarchical linear models are outlined. Although SPSS is a statistical analyses package commonly used by researchers, documentation on LMM procedures in SPSS is not thorough or user friendly. With reference to this limitation, the related procedures for performing analyses based on LMM in SPSS are described. To demonstrate the application of LMM analyses in SPSS, findings based on six waves of data collected in the Project P.A.T.H.S. (Positive Adolescent Training through Holistic Social Programmes in Hong Kong are presented.

  18. Longitudinal data analyses using linear mixed models in SPSS: concepts, procedures and illustrations.

    Science.gov (United States)

    Shek, Daniel T L; Ma, Cecilia M S

    2011-01-05

    Although different methods are available for the analyses of longitudinal data, analyses based on generalized linear models (GLM) are criticized as violating the assumption of independence of observations. Alternatively, linear mixed models (LMM) are commonly used to understand changes in human behavior over time. In this paper, the basic concepts surrounding LMM (or hierarchical linear models) are outlined. Although SPSS is a statistical analyses package commonly used by researchers, documentation on LMM procedures in SPSS is not thorough or user friendly. With reference to this limitation, the related procedures for performing analyses based on LMM in SPSS are described. To demonstrate the application of LMM analyses in SPSS, findings based on six waves of data collected in the Project P.A.T.H.S. (Positive Adolescent Training through Holistic Social Programmes) in Hong Kong are presented.

  19. Speed Sensorless mixed sensitivity linear parameter variant H_inf control of the induction motor

    NARCIS (Netherlands)

    Toth, R.; Fodor, D.

    2004-01-01

    The paper shows the design of a robust control structure for the speed sensorless vector control of the IM, based on the mixed sensitivity (MS) linear parameter variant (LPV) H8 control theory. The controller makes possible the direct control of the flux and speed of the motor with torque adaptation

  20. Use of non-linear mixed-effects modelling and regression analysis to predict the number of somatic coliphages by plaque enumeration after 3 hours of incubation.

    Science.gov (United States)

    Mendez, Javier; Monleon-Getino, Antonio; Jofre, Juan; Lucena, Francisco

    2017-10-01

    The present study aimed to establish the kinetics of the appearance of coliphage plaques using the double agar layer titration technique to evaluate the feasibility of using traditional coliphage plaque forming unit (PFU) enumeration as a rapid quantification method. Repeated measurements of the appearance of plaques of coliphages titrated according to ISO 10705-2 at different times were analysed using non-linear mixed-effects regression to determine the most suitable model of their appearance kinetics. Although this model is adequate, to simplify its applicability two linear models were developed to predict the numbers of coliphages reliably, using the PFU counts as determined by the ISO after only 3 hours of incubation. One linear model, when the number of plaques detected was between 4 and 26 PFU after 3 hours, had a linear fit of: (1.48 × Counts 3 h + 1.97); and the other, values >26 PFU, had a fit of (1.18 × Counts 3 h + 2.95). If the number of plaques detected was PFU after 3 hours, we recommend incubation for (18 ± 3) hours. The study indicates that the traditional coliphage plating technique has a reasonable potential to provide results in a single working day without the need to invest in additional laboratory equipment.

  1. A Mixed Integer Linear Programming Model for the North Atlantic Aircraft Trajectory Planning

    OpenAIRE

    Sbihi , Mohammed; Rodionova , Olga; Delahaye , Daniel; Mongeau , Marcel

    2015-01-01

    International audience; This paper discusses the trajectory planning problem for ights in the North Atlantic oceanic airspace (NAT). We develop a mathematical optimization framework in view of better utilizing available capacity by re-routing aircraft. The model is constructed by discretizing the problem parameters. A Mixed integer linear program (MILP) is proposed. Based on the MILP a heuristic to solve real-size instances is also introduced

  2. A Comparative Theoretical and Computational Study on Robust Counterpart Optimization: I. Robust Linear Optimization and Robust Mixed Integer Linear Optimization

    Science.gov (United States)

    Li, Zukui; Ding, Ran; Floudas, Christodoulos A.

    2011-01-01

    Robust counterpart optimization techniques for linear optimization and mixed integer linear optimization problems are studied in this paper. Different uncertainty sets, including those studied in literature (i.e., interval set; combined interval and ellipsoidal set; combined interval and polyhedral set) and new ones (i.e., adjustable box; pure ellipsoidal; pure polyhedral; combined interval, ellipsoidal, and polyhedral set) are studied in this work and their geometric relationship is discussed. For uncertainty in the left hand side, right hand side, and objective function of the optimization problems, robust counterpart optimization formulations induced by those different uncertainty sets are derived. Numerical studies are performed to compare the solutions of the robust counterpart optimization models and applications in refinery production planning and batch process scheduling problem are presented. PMID:21935263

  3. Evaluation of a Linear Mixing Model to Retrieve Soil and Vegetation Temperatures of Land Targets

    NARCIS (Netherlands)

    Yang, J.; Jia, L.; Cui, Y.; Zhou, J.; Menenti, M.

    2014-01-01

    A simple linear mixing model of heterogeneous soil-vegetation system and retrieval of component temperatures from directional remote sensing measurements by inverting this model is evaluated in this paper using observations by a thermal camera. The thermal camera was used to obtain multi-angular TIR

  4. Simultaneous inference for multilevel linear mixed models - with an application to a large-scale school meal study

    DEFF Research Database (Denmark)

    Ritz, Christian; Laursen, Rikke Pilmann; Damsgaard, Camilla Trab

    2017-01-01

    of a school meal programme. We propose a novel and versatile framework for simultaneous inference on parameters estimated from linear mixed models that were fitted separately for several outcomes from the same study, but did not necessarily contain the same fixed or random effects. By combining asymptotic...... sizes of practical relevance we studied simultaneous coverage through simulation, which showed that the approach achieved acceptable coverage probabilities even for small sample sizes (10 clusters) and for 2–16 outcomes. The approach also compared favourably with a joint modelling approach. We also...

  5. Model and measurements of linear mixing in thermal IR ground leaving radiance spectra

    Science.gov (United States)

    Balick, Lee; Clodius, William; Jeffery, Christopher; Theiler, James; McCabe, Matthew; Gillespie, Alan; Mushkin, Amit; Danilina, Iryna

    2007-10-01

    Hyperspectral thermal IR remote sensing is an effective tool for the detection and identification of gas plumes and solid materials. Virtually all remotely sensed thermal IR pixels are mixtures of different materials and temperatures. As sensors improve and hyperspectral thermal IR remote sensing becomes more quantitative, the concept of homogeneous pixels becomes inadequate. The contributions of the constituents to the pixel spectral ground leaving radiance are weighted by their spectral emissivities and their temperature, or more correctly, temperature distributions, because real pixels are rarely thermally homogeneous. Planck's Law defines a relationship between temperature and radiance that is strongly wavelength dependent, even for blackbodies. Spectral ground leaving radiance (GLR) from mixed pixels is temperature and wavelength dependent and the relationship between observed radiance spectra from mixed pixels and library emissivity spectra of mixtures of 'pure' materials is indirect. A simple model of linear mixing of subpixel radiance as a function of material type, the temperature distribution of each material and the abundance of the material within a pixel is presented. The model indicates that, qualitatively and given normal environmental temperature variability, spectral features remain observable in mixtures as long as the material occupies more than roughly 10% of the pixel. Field measurements of known targets made on the ground and by an airborne sensor are presented here and serve as a reality check on the model. Target spectral GLR from mixtures as a function of temperature distribution and abundance within the pixel at day and night are presented and compare well qualitatively with model output.

  6. Linear matrix inequality approach for synchronization control of fuzzy cellular neural networks with mixed time delays

    International Nuclear Information System (INIS)

    Balasubramaniam, P.; Kalpana, M.; Rakkiyappan, R.

    2012-01-01

    Fuzzy cellular neural networks (FCNNs) are special kinds of cellular neural networks (CNNs). Each cell in an FCNN contains fuzzy operating abilities. The entire network is governed by cellular computing laws. The design of FCNNs is based on fuzzy local rules. In this paper, a linear matrix inequality (LMI) approach for synchronization control of FCNNs with mixed delays is investigated. Mixed delays include discrete time-varying delays and unbounded distributed delays. A dynamic control scheme is proposed to achieve the synchronization between a drive network and a response network. By constructing the Lyapunov—Krasovskii functional which contains a triple-integral term and the free-weighting matrices method an improved delay-dependent stability criterion is derived in terms of LMIs. The controller can be easily obtained by solving the derived LMIs. A numerical example and its simulations are presented to illustrate the effectiveness of the proposed method. (interdisciplinary physics and related areas of science and technology)

  7. A vine copula mixed effect model for trivariate meta-analysis of diagnostic test accuracy studies accounting for disease prevalence.

    Science.gov (United States)

    Nikoloulopoulos, Aristidis K

    2017-10-01

    A bivariate copula mixed model has been recently proposed to synthesize diagnostic test accuracy studies and it has been shown that it is superior to the standard generalized linear mixed model in this context. Here, we call trivariate vine copulas to extend the bivariate meta-analysis of diagnostic test accuracy studies by accounting for disease prevalence. Our vine copula mixed model includes the trivariate generalized linear mixed model as a special case and can also operate on the original scale of sensitivity, specificity, and disease prevalence. Our general methodology is illustrated by re-analyzing the data of two published meta-analyses. Our study suggests that there can be an improvement on trivariate generalized linear mixed model in fit to data and makes the argument for moving to vine copula random effects models especially because of their richness, including reflection asymmetric tail dependence, and computational feasibility despite their three dimensionality.

  8. Comparing a single case to a control group - Applying linear mixed effects models to repeated measures data.

    Science.gov (United States)

    Huber, Stefan; Klein, Elise; Moeller, Korbinian; Willmes, Klaus

    2015-10-01

    In neuropsychological research, single-cases are often compared with a small control sample. Crawford and colleagues developed inferential methods (i.e., the modified t-test) for such a research design. In the present article, we suggest an extension of the methods of Crawford and colleagues employing linear mixed models (LMM). We first show that a t-test for the significance of a dummy coded predictor variable in a linear regression is equivalent to the modified t-test of Crawford and colleagues. As an extension to this idea, we then generalized the modified t-test to repeated measures data by using LMMs to compare the performance difference in two conditions observed in a single participant to that of a small control group. The performance of LMMs regarding Type I error rates and statistical power were tested based on Monte-Carlo simulations. We found that starting with about 15-20 participants in the control sample Type I error rates were close to the nominal Type I error rate using the Satterthwaite approximation for the degrees of freedom. Moreover, statistical power was acceptable. Therefore, we conclude that LMMs can be applied successfully to statistically evaluate performance differences between a single-case and a control sample. Copyright © 2015 Elsevier Ltd. All rights reserved.

  9. An Efficient Test for Gene-Environment Interaction in Generalized Linear Mixed Models with Family Data.

    Science.gov (United States)

    Mazo Lopera, Mauricio A; Coombes, Brandon J; de Andrade, Mariza

    2017-09-27

    Gene-environment (GE) interaction has important implications in the etiology of complex diseases that are caused by a combination of genetic factors and environment variables. Several authors have developed GE analysis in the context of independent subjects or longitudinal data using a gene-set. In this paper, we propose to analyze GE interaction for discrete and continuous phenotypes in family studies by incorporating the relatedness among the relatives for each family into a generalized linear mixed model (GLMM) and by using a gene-based variance component test. In addition, we deal with collinearity problems arising from linkage disequilibrium among single nucleotide polymorphisms (SNPs) by considering their coefficients as random effects under the null model estimation. We show that the best linear unbiased predictor (BLUP) of such random effects in the GLMM is equivalent to the ridge regression estimator. This equivalence provides a simple method to estimate the ridge penalty parameter in comparison to other computationally-demanding estimation approaches based on cross-validation schemes. We evaluated the proposed test using simulation studies and applied it to real data from the Baependi Heart Study consisting of 76 families. Using our approach, we identified an interaction between BMI and the Peroxisome Proliferator Activated Receptor Gamma ( PPARG ) gene associated with diabetes.

  10. Linearity and Non-linearity of Photorefractive effect in Materials ...

    African Journals Online (AJOL)

    In this paper we have studied the Linearity and Non-linearity of Photorefractive effect in materials using the band transport model. For low light beam intensities the change in the refractive index is proportional to the electric field for linear optics while for non- linear optics the change in refractive index is directly proportional ...

  11. A Nonlinear Mixed Effects Model for the Prediction of Natural Gas Consumption by Individual Customers

    Czech Academy of Sciences Publication Activity Database

    Brabec, Marek; Konár, Ondřej; Pelikán, Emil; Malý, Marek

    2008-01-01

    Roč. 24, č. 4 (2008), s. 659-678 ISSN 0169-2070 R&D Projects: GA AV ČR 1ET400300513 Institutional research plan: CEZ:AV0Z10300504 Keywords : individual gas consumption * nonlinear mixed effects model * ARIMAX * ARX * generalized linear mixed model * conditional modeling Subject RIV: JE - Non-nuclear Energetics, Energy Consumption ; Use Impact factor: 1.685, year: 2008

  12. Linear mixing model applied to coarse resolution satellite data

    Science.gov (United States)

    Holben, Brent N.; Shimabukuro, Yosio E.

    1992-01-01

    A linear mixing model typically applied to high resolution data such as Airborne Visible/Infrared Imaging Spectrometer, Thematic Mapper, and Multispectral Scanner System is applied to the NOAA Advanced Very High Resolution Radiometer coarse resolution satellite data. The reflective portion extracted from the middle IR channel 3 (3.55 - 3.93 microns) is used with channels 1 (0.58 - 0.68 microns) and 2 (0.725 - 1.1 microns) to run the Constrained Least Squares model to generate fraction images for an area in the west central region of Brazil. The derived fraction images are compared with an unsupervised classification and the fraction images derived from Landsat TM data acquired in the same day. In addition, the relationship betweeen these fraction images and the well known NDVI images are presented. The results show the great potential of the unmixing techniques for applying to coarse resolution data for global studies.

  13. Optimising the selection of food items for food frequency questionnaires using Mixed Integer Linear Programming

    NARCIS (Netherlands)

    Lemmen-Gerdessen, van J.C.; Souverein, O.W.; Veer, van 't P.; Vries, de J.H.M.

    2015-01-01

    Objective To support the selection of food items for FFQs in such a way that the amount of information on all relevant nutrients is maximised while the food list is as short as possible. Design Selection of the most informative food items to be included in FFQs was modelled as a Mixed Integer Linear

  14. A Comparison of Two-Stage Approaches for Fitting Nonlinear Ordinary Differential Equation Models with Mixed Effects.

    Science.gov (United States)

    Chow, Sy-Miin; Bendezú, Jason J; Cole, Pamela M; Ram, Nilam

    2016-01-01

    Several approaches exist for estimating the derivatives of observed data for model exploration purposes, including functional data analysis (FDA; Ramsay & Silverman, 2005 ), generalized local linear approximation (GLLA; Boker, Deboeck, Edler, & Peel, 2010 ), and generalized orthogonal local derivative approximation (GOLD; Deboeck, 2010 ). These derivative estimation procedures can be used in a two-stage process to fit mixed effects ordinary differential equation (ODE) models. While the performance and utility of these routines for estimating linear ODEs have been established, they have not yet been evaluated in the context of nonlinear ODEs with mixed effects. We compared properties of the GLLA and GOLD to an FDA-based two-stage approach denoted herein as functional ordinary differential equation with mixed effects (FODEmixed) in a Monte Carlo (MC) study using a nonlinear coupled oscillators model with mixed effects. Simulation results showed that overall, the FODEmixed outperformed both the GLLA and GOLD across all the embedding dimensions considered, but a novel use of a fourth-order GLLA approach combined with very high embedding dimensions yielded estimation results that almost paralleled those from the FODEmixed. We discuss the strengths and limitations of each approach and demonstrate how output from each stage of FODEmixed may be used to inform empirical modeling of young children's self-regulation.

  15. Optimal placement of capacitors in a radial network using conic and mixed integer linear programming

    Energy Technology Data Exchange (ETDEWEB)

    Jabr, R.A. [Electrical, Computer and Communication Engineering Department, Notre Dame University, P.O. Box: 72, Zouk Mikhael, Zouk Mosbeh (Lebanon)

    2008-06-15

    This paper considers the problem of optimally placing fixed and switched type capacitors in a radial distribution network. The aim of this problem is to minimize the costs associated with capacitor banks, peak power, and energy losses whilst satisfying a pre-specified set of physical and technical constraints. The proposed solution is obtained using a two-phase approach. In phase-I, the problem is formulated as a conic program in which all nodes are candidates for placement of capacitor banks whose sizes are considered as continuous variables. A global solution of the phase-I problem is obtained using an interior-point based conic programming solver. Phase-II seeks a practical optimal solution by considering capacitor sizes as discrete variables. The problem in this phase is formulated as a mixed integer linear program based on minimizing the L1-norm of deviations from the phase-I state variable values. The solution to the phase-II problem is obtained using a mixed integer linear programming solver. The proposed method is validated via extensive comparisons with previously published results. (author)

  16. The transition model test for serial dependence in mixed-effects models for binary data

    DEFF Research Database (Denmark)

    Breinegaard, Nina; Rabe-Hesketh, Sophia; Skrondal, Anders

    2017-01-01

    Generalized linear mixed models for longitudinal data assume that responses at different occasions are conditionally independent, given the random effects and covariates. Although this assumption is pivotal for consistent estimation, violation due to serial dependence is hard to assess by model...

  17. A D-vine copula-based model for repeated measurements extending linear mixed models with homogeneous correlation structure.

    Science.gov (United States)

    Killiches, Matthias; Czado, Claudia

    2018-03-22

    We propose a model for unbalanced longitudinal data, where the univariate margins can be selected arbitrarily and the dependence structure is described with the help of a D-vine copula. We show that our approach is an extremely flexible extension of the widely used linear mixed model if the correlation is homogeneous over the considered individuals. As an alternative to joint maximum-likelihood a sequential estimation approach for the D-vine copula is provided and validated in a simulation study. The model can handle missing values without being forced to discard data. Since conditional distributions are known analytically, we easily make predictions for future events. For model selection, we adjust the Bayesian information criterion to our situation. In an application to heart surgery data our model performs clearly better than competing linear mixed models. © 2018, The International Biometric Society.

  18. Modelling lactation curve for milk fat to protein ratio in Iranian buffaloes (Bubalus bubalis) using non-linear mixed models.

    Science.gov (United States)

    Hossein-Zadeh, Navid Ghavi

    2016-08-01

    The aim of this study was to compare seven non-linear mathematical models (Brody, Wood, Dhanoa, Sikka, Nelder, Rook and Dijkstra) to examine their efficiency in describing the lactation curves for milk fat to protein ratio (FPR) in Iranian buffaloes. Data were 43 818 test-day records for FPR from the first three lactations of Iranian buffaloes which were collected on 523 dairy herds in the period from 1996 to 2012 by the Animal Breeding Center of Iran. Each model was fitted to monthly FPR records of buffaloes using the non-linear mixed model procedure (PROC NLMIXED) in SAS and the parameters were estimated. The models were tested for goodness of fit using Akaike's information criterion (AIC), Bayesian information criterion (BIC) and log maximum likelihood (-2 Log L). The Nelder and Sikka mixed models provided the best fit of lactation curve for FPR in the first and second lactations of Iranian buffaloes, respectively. However, Wood, Dhanoa and Sikka mixed models provided the best fit of lactation curve for FPR in the third parity buffaloes. Evaluation of first, second and third lactation features showed that all models, except for Dijkstra model in the third lactation, under-predicted test time at which daily FPR was minimum. On the other hand, minimum FPR was over-predicted by all equations. Evaluation of the different models used in this study indicated that non-linear mixed models were sufficient for fitting test-day FPR records of Iranian buffaloes.

  19. A Mixed Integer Linear Programming Approach to Electrical Stimulation Optimization Problems.

    Science.gov (United States)

    Abouelseoud, Gehan; Abouelseoud, Yasmine; Shoukry, Amin; Ismail, Nour; Mekky, Jaidaa

    2018-02-01

    Electrical stimulation optimization is a challenging problem. Even when a single region is targeted for excitation, the problem remains a constrained multi-objective optimization problem. The constrained nature of the problem results from safety concerns while its multi-objectives originate from the requirement that non-targeted regions should remain unaffected. In this paper, we propose a mixed integer linear programming formulation that can successfully address the challenges facing this problem. Moreover, the proposed framework can conclusively check the feasibility of the stimulation goals. This helps researchers to avoid wasting time trying to achieve goals that are impossible under a chosen stimulation setup. The superiority of the proposed framework over alternative methods is demonstrated through simulation examples.

  20. Efficient multiple-trait association and estimation of genetic correlation using the matrix-variate linear mixed model.

    Science.gov (United States)

    Furlotte, Nicholas A; Eskin, Eleazar

    2015-05-01

    Multiple-trait association mapping, in which multiple traits are used simultaneously in the identification of genetic variants affecting those traits, has recently attracted interest. One class of approaches for this problem builds on classical variance component methodology, utilizing a multitrait version of a linear mixed model. These approaches both increase power and provide insights into the genetic architecture of multiple traits. In particular, it is possible to estimate the genetic correlation, which is a measure of the portion of the total correlation between traits that is due to additive genetic effects. Unfortunately, the practical utility of these methods is limited since they are computationally intractable for large sample sizes. In this article, we introduce a reformulation of the multiple-trait association mapping approach by defining the matrix-variate linear mixed model. Our approach reduces the computational time necessary to perform maximum-likelihood inference in a multiple-trait model by utilizing a data transformation. By utilizing a well-studied human cohort, we show that our approach provides more than a 10-fold speedup, making multiple-trait association feasible in a large population cohort on the genome-wide scale. We take advantage of the efficiency of our approach to analyze gene expression data. By decomposing gene coexpression into a genetic and environmental component, we show that our method provides fundamental insights into the nature of coexpressed genes. An implementation of this method is available at http://genetics.cs.ucla.edu/mvLMM. Copyright © 2015 by the Genetics Society of America.

  1. An A Posteriori Error Analysis of Mixed Finite Element Galerkin Approximations to Second Order Linear Parabolic Problems

    KAUST Repository

    Memon, Sajid; Nataraj, Neela; Pani, Amiya Kumar

    2012-01-01

    In this article, a posteriori error estimates are derived for mixed finite element Galerkin approximations to second order linear parabolic initial and boundary value problems. Using mixed elliptic reconstructions, a posteriori error estimates in L∞(L2)- and L2(L2)-norms for the solution as well as its flux are proved for the semidiscrete scheme. Finally, based on a backward Euler method, a completely discrete scheme is analyzed and a posteriori error bounds are derived, which improves upon earlier results on a posteriori estimates of mixed finite element approximations to parabolic problems. Results of numerical experiments verifying the efficiency of the estimators have also been provided. © 2012 Society for Industrial and Applied Mathematics.

  2. Quadratic temporal finite element method for linear elastic structural dynamics based on mixed convolved action

    International Nuclear Information System (INIS)

    Kim, Jin Kyu; Kim, Dong Keon

    2016-01-01

    A common approach for dynamic analysis in current practice is based on a discrete time-integration scheme. This approach can be largely attributed to the absence of a true variational framework for initial value problems. To resolve this problem, a new stationary variational principle was recently established for single-degree-of-freedom oscillating systems using mixed variables, fractional derivatives and convolutions of convolutions. In this mixed convolved action, all the governing differential equations and initial conditions are recovered from the stationarity of a single functional action. Thus, the entire description of linear elastic dynamical systems is encapsulated. For its practical application to structural dynamics, this variational formalism is systemically extended to linear elastic multidegree- of-freedom systems in this study, and a corresponding weak form is numerically implemented via a quadratic temporal finite element method. The developed numerical method is symplectic and unconditionally stable with respect to a time step for the underlying conservative system. For the forced-damped vibration, a three-story shear building is used as an example to investigate the performance of the developed numerical method, which provides accurate results with good convergence characteristics

  3. Quadratic temporal finite element method for linear elastic structural dynamics based on mixed convolved action

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jin Kyu [School of Architecture and Architectural Engineering, Hanyang University, Ansan (Korea, Republic of); Kim, Dong Keon [Dept. of Architectural Engineering, Dong A University, Busan (Korea, Republic of)

    2016-09-15

    A common approach for dynamic analysis in current practice is based on a discrete time-integration scheme. This approach can be largely attributed to the absence of a true variational framework for initial value problems. To resolve this problem, a new stationary variational principle was recently established for single-degree-of-freedom oscillating systems using mixed variables, fractional derivatives and convolutions of convolutions. In this mixed convolved action, all the governing differential equations and initial conditions are recovered from the stationarity of a single functional action. Thus, the entire description of linear elastic dynamical systems is encapsulated. For its practical application to structural dynamics, this variational formalism is systemically extended to linear elastic multidegree- of-freedom systems in this study, and a corresponding weak form is numerically implemented via a quadratic temporal finite element method. The developed numerical method is symplectic and unconditionally stable with respect to a time step for the underlying conservative system. For the forced-damped vibration, a three-story shear building is used as an example to investigate the performance of the developed numerical method, which provides accurate results with good convergence characteristics.

  4. An overview of solution methods for multi-objective mixed integer linear programming programs

    DEFF Research Database (Denmark)

    Andersen, Kim Allan; Stidsen, Thomas Riis

    Multiple objective mixed integer linear programming (MOMIP) problems are notoriously hard to solve to optimality, i.e. finding the complete set of non-dominated solutions. We will give an overview of existing methods. Among those are interactive methods, the two phases method and enumeration...... methods. In particular we will discuss the existing branch and bound approaches for solving multiple objective integer programming problems. Despite the fact that branch and bound methods has been applied successfully to integer programming problems with one criterion only a few attempts has been made...

  5. Deliberate practice predicts performance throughout time in adolescent chess players and dropouts: A linear mixed models analysis.

    NARCIS (Netherlands)

    de Bruin, A.B.H.; Smits, N.; Rikers, R.M.J.P.; Schmidt, H.G.

    2008-01-01

    In this study, the longitudinal relation between deliberate practice and performance in chess was examined using a linear mixed models analysis. The practice activities and performance ratings of young elite chess players, who were either in, or had dropped out of the Dutch national chess training,

  6. Compressibility effects on turbulent mixing

    Science.gov (United States)

    Panickacheril John, John; Donzis, Diego

    2016-11-01

    We investigate the effect of compressibility on passive scalar mixing in isotropic turbulence with a focus on the fundamental mechanisms that are responsible for such effects using a large Direct Numerical Simulation (DNS) database. The database includes simulations with Taylor Reynolds number (Rλ) up to 100, turbulent Mach number (Mt) between 0.1 and 0.6 and Schmidt number (Sc) from 0.5 to 1.0. We present several measures of mixing efficiency on different canonical flows to robustly identify compressibility effects. We found that, like shear layers, mixing is reduced as Mach number increases. However, data also reveal a non-monotonic trend with Mt. To assess directly the effect of dilatational motions we also present results with both dilatational and soleniodal forcing. Analysis suggests that a small fraction of dilatational forcing decreases mixing time at higher Mt. Scalar spectra collapse when normalized by Batchelor variables which suggests that a compressive mechanism similar to Batchelor mixing in incompressible flows might be responsible for better mixing at high Mt and with dilatational forcing compared to pure solenoidal mixing. We also present results on scalar budgets, in particular on production and dissipation. Support from NSF is gratefully acknowledged.

  7. Linearity and Non-linearity of Photorefractive effect in Materials ...

    African Journals Online (AJOL)

    Linearity and Non-linearity of Photorefractive effect in Materials using the Band transport ... For low light beam intensities the change in the refractive index is ... field is spatially phase shifted by /2 relative to the interference fringe pattern, which ...

  8. Calculation of mixed depth for some metal-Si systems

    International Nuclear Information System (INIS)

    Poker, D.B.

    1986-01-01

    The linearity of mixing during ion beam mixing of metals on Si has been found to depend critically upon the method by which the mixed depth is determined. For nonstoichiometric, diffuse mixing, several methods of calculating the mixed depth may be used, namely: integrated area, moment, error function, and 10%-90%. For stoichiometric mixing, the determination of the mixed depth is somewhat more straightforward, and several of the same methods may be used. Some of these methods suffer from the exhibition of an initial offset due to the finite detector resolution. An empirical method of removing the offset using a cubic correction is an improvement, but adds a nonlinear perturbation to the power law dependence on dose, approaching 2/3 for small depths. The effect of detector resolution on the measured depth of mixing is given for several methods, using simulated data with a linear increase in depth as a function of dose. The results effect on the exponent of a power law fit to the dose dependence is given. Only the moment method is immune to the resolution effects

  9. Enriching an effect calculus with linear types

    DEFF Research Database (Denmark)

    Egger, Jeff; Møgelberg, Rasmus Ejlers; Simpson, Alex

    2009-01-01

    We define an ``enriched effect calculus'' by conservatively extending  a type theory for computational effects with primitives from linear logic. By doing so, we obtain a generalisation of linear type theory, intended as a formalism for expressing linear aspects of effects. As a worked example, we...... formulate  linearly-used continuations in the enriched effect calculus. These are captured by a fundamental translation of the enriched effect calculus into itself, which extends existing call-by-value and call-by-name linearly-used CPS translations. We show that our translation is involutive. Full...... completeness results for the various linearly-used CPS translations  follow. Our main results, the conservativity of enriching the effect calculus with linear primitives, and the involution property of the fundamental translation, are proved using a category-theoretic semantics for the enriched effect calculus...

  10. Mixed Integer Linear Programming model for Crude Palm Oil Supply Chain Planning

    Science.gov (United States)

    Sembiring, Pasukat; Mawengkang, Herman; Sadyadharma, Hendaru; Bu'ulolo, F.; Fajriana

    2018-01-01

    The production process of crude palm oil (CPO) can be defined as the milling process of raw materials, called fresh fruit bunch (FFB) into end products palm oil. The process usually through a series of steps producing and consuming intermediate products. The CPO milling industry considered in this paper does not have oil palm plantation, therefore the FFB are supplied by several public oil palm plantations. Due to the limited availability of FFB, then it is necessary to choose from which plantations would be appropriate. This paper proposes a mixed integer linear programming model the supply chain integrated problem, which include waste processing. The mathematical programming model is solved using neighborhood search approach.

  11. Multivariate mixed linear model analysis of longitudinal data: an information-rich statistical technique for analyzing disease resistance data

    Science.gov (United States)

    The mixed linear model (MLM) is currently among the most advanced and flexible statistical modeling techniques and its use in tackling problems in plant pathology has begun surfacing in the literature. The longitudinal MLM is a multivariate extension that handles repeatedly measured data, such as r...

  12. Impacto não Linear do Marketing Mix no Desempenho em Vendas de Marcas

    Directory of Open Access Journals (Sweden)

    Rafael Barreiros Porto

    2015-01-01

    Full Text Available O padrão de impacto que as atividades de marketingexercem nas vendas não tem sido evidenciado na literatura. Muitas pesquisas adotam perspectivas lineares restritas, desconsiderando as evidências empíricas. Este trabalho investigou o impacto não linear do marketingmixno volume em vendas e no volume de consumidores e de compra por consumidor. Realizou-se um estudo longitudinal em painel de marcas e de consumidores simultâneos. Analisaram-se 121 marcas durante 13 meses, com 793 compras/mês feitas pelos consumidores por meio de três equações de estimativas generalizadas. Os resultados apontam que o marketing mix, em especial brandinge precificação, impacta fortemente todas as dependentes em formato não linear, com bons ajustes dos parâmetros. Oefeito conjunto gera economias de escala para as marcas, enquanto, para cada consumidor, o efeito conjunto estimula-o a adquirir maiores quantidades gradativamente. A pesquisa demonstra oito padrões impactantes do marketingmixsobre os indicadores investigados, com alterações de sua ordem e de seu peso para marcas e consumidores.

  13. Solving large mixed linear models using preconditioned conjugate gradient iteration.

    Science.gov (United States)

    Strandén, I; Lidauer, M

    1999-12-01

    Continuous evaluation of dairy cattle with a random regression test-day model requires a fast solving method and algorithm. A new computing technique feasible in Jacobi and conjugate gradient based iterative methods using iteration on data is presented. In the new computing technique, the calculations in multiplication of a vector by a matrix were recorded to three steps instead of the commonly used two steps. The three-step method was implemented in a general mixed linear model program that used preconditioned conjugate gradient iteration. Performance of this program in comparison to other general solving programs was assessed via estimation of breeding values using univariate, multivariate, and random regression test-day models. Central processing unit time per iteration with the new three-step technique was, at best, one-third that needed with the old technique. Performance was best with the test-day model, which was the largest and most complex model used. The new program did well in comparison to other general software. Programs keeping the mixed model equations in random access memory required at least 20 and 435% more time to solve the univariate and multivariate animal models, respectively. Computations of the second best iteration on data took approximately three and five times longer for the animal and test-day models, respectively, than did the new program. Good performance was due to fast computing time per iteration and quick convergence to the final solutions. Use of preconditioned conjugate gradient based methods in solving large breeding value problems is supported by our findings.

  14. A Bayesian Framework for Generalized Linear Mixed Modeling Identifies New Candidate Loci for Late-Onset Alzheimer's Disease.

    Science.gov (United States)

    Wang, Xulong; Philip, Vivek M; Ananda, Guruprasad; White, Charles C; Malhotra, Ankit; Michalski, Paul J; Karuturi, Krishna R Murthy; Chintalapudi, Sumana R; Acklin, Casey; Sasner, Michael; Bennett, David A; De Jager, Philip L; Howell, Gareth R; Carter, Gregory W

    2018-03-05

    Recent technical and methodological advances have greatly enhanced genome-wide association studies (GWAS). The advent of low-cost whole-genome sequencing facilitates high-resolution variant identification, and the development of linear mixed models (LMM) allows improved identification of putatively causal variants. While essential for correcting false positive associations due to sample relatedness and population stratification, LMMs have commonly been restricted to quantitative variables. However, phenotypic traits in association studies are often categorical, coded as binary case-control or ordered variables describing disease stages. To address these issues, we have devised a method for genomic association studies that implements a generalized linear mixed model (GLMM) in a Bayesian framework, called Bayes-GLMM Bayes-GLMM has four major features: (1) support of categorical, binary and quantitative variables; (2) cohesive integration of previous GWAS results for related traits; (3) correction for sample relatedness by mixed modeling; and (4) model estimation by both Markov chain Monte Carlo (MCMC) sampling and maximal likelihood estimation. We applied Bayes-GLMM to the whole-genome sequencing cohort of the Alzheimer's Disease Sequencing Project (ADSP). This study contains 570 individuals from 111 families, each with Alzheimer's disease diagnosed at one of four confidence levels. With Bayes-GLMM we identified four variants in three loci significantly associated with Alzheimer's disease. Two variants, rs140233081 and rs149372995 lie between PRKAR1B and PDGFA The coded proteins are localized to the glial-vascular unit, and PDGFA transcript levels are associated with AD-related neuropathology. In summary, this work provides implementation of a flexible, generalized mixed model approach in a Bayesian framework for association studies. Copyright © 2018, Genetics.

  15. Visualizing multifactorial and multi-attribute effect sizes in linear mixed models with a view towards sensometrics

    DEFF Research Database (Denmark)

    and straightforward idea is to interpret effects relative to the residual error and to choose the proper effect size measure. For multi-attribute bar plots of F-statistics this amounts, in balanced settings, to a simple transformation of the bar heights to get them transformed into depicting what can be seen...... on a multifactorial sensory profile data set and compared to actual d-prime calculations based on ordinal regression modelling through the ordinal package. A generic ``plug-in'' implementation of the method is given in the SensMixed package, which again depends on the lmerTest package. We discuss and clarify the bias...

  16. A brief introduction to regression designs and mixed-effects modelling by a recent convert

    OpenAIRE

    Balling, Laura Winther

    2008-01-01

    This article discusses the advantages of multiple regression designs over the factorial designs traditionally used in many psycholinguistic experiments. It is shown that regression designs are typically more informative, statistically more powerful and better suited to the analysis of naturalistic tasks. The advantages of including both fixed and random effects are demonstrated with reference to linear mixed-effects models, and problems of collinearity, variable distribution and variable sele...

  17. Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming.

    Science.gov (United States)

    Baran, Richard; Northen, Trent R

    2013-10-15

    Untargeted metabolite profiling using liquid chromatography and mass spectrometry coupled via electrospray ionization is a powerful tool for the discovery of novel natural products, metabolic capabilities, and biomarkers. However, the elucidation of the identities of uncharacterized metabolites from spectral features remains challenging. A critical step in the metabolite identification workflow is the assignment of redundant spectral features (adducts, fragments, multimers) and calculation of the underlying chemical formula. Inspection of the data by experts using computational tools solving partial problems (e.g., chemical formula calculation for individual ions) can be performed to disambiguate alternative solutions and provide reliable results. However, manual curation is tedious and not readily scalable or standardized. Here we describe an automated procedure for the robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming optimization (RAMSI). Chemical rules among related ions are expressed as linear constraints and both the spectra interpretation and chemical formula calculation are performed in a single optimization step. This approach is unbiased in that it does not require predefined sets of neutral losses and positive and negative polarity spectra can be combined in a single optimization. The procedure was evaluated with 30 experimental mass spectra and was found to effectively identify the protonated or deprotonated molecule ([M + H](+) or [M - H](-)) while being robust to the presence of background ions. RAMSI provides a much-needed standardized tool for interpreting ions for subsequent identification in untargeted metabolomics workflows.

  18. Effect of Mixing Process on Polypropylene Modified Bituminous Concrete Mix Properties

    OpenAIRE

    Noor Zainab Habib; Ibrahim Kamaruddin; Madzalan Napiah; Isa Mohd Tan

    2011-01-01

    This paper presents a research conducted to investigate the effect of mixing process on polypropylene (PP) modified bitumen mixed with well graded aggregate to form modified bituminous concrete mix. Two mode of mixing, namely dry and wet with different concentration of polymer polypropylene was used with 80/100 pen bitumen, to evaluate the bituminous concrete mix properties. Three percentages of polymer varying from 1-3% by the weight of bitumen was used in this study. Three mixes namely cont...

  19. Effect of Mixing Condition on Rheological Behavior of Epoxy-Clay Nanocomposites

    Directory of Open Access Journals (Sweden)

    Gholamhossein Sodeifian

    2012-12-01

    Full Text Available The effect of mixing on rheological behavior of 6% wt epoxy-clay nanocomposites was studied. The mixing processes were carried out by low shear mixer, homogenizer and ultrasonic and combination of different mixing techniques at medium and maximum power. All these methods led to intercalated structure. The XRD results showed that the ultrasonic has the best effect on dispersion while a low shear mixer has the least positive effect. Opposite to an ultrasonic mixing method, the homogenization process through maximum power does not change the dispersion state significantly. The best condition would be to use an ultrasonic mixer after a homogenizer, otherwise the reverse process may result in lower dispersion. Small amplitude oscillatory measurements were carried out on linear regime over 0.1-100 Hz. According to the fact that rheological responses are very sensitive to polymerparticle interactions and accessible surface area, the slope of storage modulus and shear thinning exponent of viscosity are proportional to the level of dispersion. This implies that more increases in intergallary height may lead to less terminal slope. The continuous relaxation profile and zero shear viscosity were generated by experimental data via computer software based on neural network approach. To check the validity of software, the experimental data were recovered with very low deviation using relaxation spectrum. The experimental observations showed that a solid-like behavior, as a result of better dispersion, can prevent the profile from falling especially at longertimes.

  20. Actuarial statistics with generalized linear mixed models

    NARCIS (Netherlands)

    Antonio, K.; Beirlant, J.

    2007-01-01

    Over the last decade the use of generalized linear models (GLMs) in actuarial statistics has received a lot of attention, starting from the actuarial illustrations in the standard text by McCullagh and Nelder [McCullagh, P., Nelder, J.A., 1989. Generalized linear models. In: Monographs on Statistics

  1. Topics in computational linear optimization

    DEFF Research Database (Denmark)

    Hultberg, Tim Helge

    2000-01-01

    Linear optimization has been an active area of research ever since the pioneering work of G. Dantzig more than 50 years ago. This research has produced a long sequence of practical as well as theoretical improvements of the solution techniques avilable for solving linear optimization problems...... of high quality solvers and the use of algebraic modelling systems to handle the communication between the modeller and the solver. This dissertation features four topics in computational linear optimization: A) automatic reformulation of mixed 0/1 linear programs, B) direct solution of sparse unsymmetric...... systems of linear equations, C) reduction of linear programs and D) integration of algebraic modelling of linear optimization problems in C++. Each of these topics is treated in a separate paper included in this dissertation. The efficiency of solving mixed 0-1 linear programs by linear programming based...

  2. Warped linear mixed models for the genetic analysis of transformed phenotypes.

    Science.gov (United States)

    Fusi, Nicolo; Lippert, Christoph; Lawrence, Neil D; Stegle, Oliver

    2014-09-19

    Linear mixed models (LMMs) are a powerful and established tool for studying genotype-phenotype relationships. A limitation of the LMM is that the model assumes Gaussian distributed residuals, a requirement that rarely holds in practice. Violations of this assumption can lead to false conclusions and loss in power. To mitigate this problem, it is common practice to pre-process the phenotypic values to make them as Gaussian as possible, for instance by applying logarithmic or other nonlinear transformations. Unfortunately, different phenotypes require different transformations, and choosing an appropriate transformation is challenging and subjective. Here we present an extension of the LMM that estimates an optimal transformation from the observed data. In simulations and applications to real data from human, mouse and yeast, we show that using transformations inferred by our model increases power in genome-wide association studies and increases the accuracy of heritability estimation and phenotype prediction.

  3. Delta-tilde interpretation of standard linear mixed model results

    DEFF Research Database (Denmark)

    Brockhoff, Per Bruun; Amorim, Isabel de Sousa; Kuznetsova, Alexandra

    2016-01-01

    effects relative to the residual error and to choose the proper effect size measure. For multi-attribute bar plots of F-statistics this amounts, in balanced settings, to a simple transformation of the bar heights to get them transformed into depicting what can be seen as approximately the average pairwise...... data set and compared to actual d-prime calculations based on Thurstonian regression modeling through the ordinal package. For more challenging cases we offer a generic "plug-in" implementation of a version of the method as part of the R-package SensMixed. We discuss and clarify the bias mechanisms...

  4. Non-Linear Fibres for Widely Tunable Femtosecond Fibre Lasers

    DEFF Research Database (Denmark)

    Pedersen, Martin Erland Vestergaard

    and numerically. For the intermodal four-wave mixing experiment an alternative version of the Generalised Non-Linear Schrödinger Equation is derived, which includes the correct dispersion of the transverse field. It is observed that the alternative version of the Generalised Non-Linear Schrödinger Equation......, as opposed to the commonly used version, is able to reproduce the intermodal four-wave mixing experiment. The relation between the intramodal self-phase modulation and the intramodal Raman effect is determined from experimental measurements on a number of step-index fibres. The Raman fraction is found...

  5. Using empirical Bayes predictors from generalized linear mixed models to test and visualize associations among longitudinal outcomes.

    Science.gov (United States)

    Mikulich-Gilbertson, Susan K; Wagner, Brandie D; Grunwald, Gary K; Riggs, Paula D; Zerbe, Gary O

    2018-01-01

    Medical research is often designed to investigate changes in a collection of response variables that are measured repeatedly on the same subjects. The multivariate generalized linear mixed model (MGLMM) can be used to evaluate random coefficient associations (e.g. simple correlations, partial regression coefficients) among outcomes that may be non-normal and differently distributed by specifying a multivariate normal distribution for their random effects and then evaluating the latent relationship between them. Empirical Bayes predictors are readily available for each subject from any mixed model and are observable and hence, plotable. Here, we evaluate whether second-stage association analyses of empirical Bayes predictors from a MGLMM, provide a good approximation and visual representation of these latent association analyses using medical examples and simulations. Additionally, we compare these results with association analyses of empirical Bayes predictors generated from separate mixed models for each outcome, a procedure that could circumvent computational problems that arise when the dimension of the joint covariance matrix of random effects is large and prohibits estimation of latent associations. As has been shown in other analytic contexts, the p-values for all second-stage coefficients that were determined by naively assuming normality of empirical Bayes predictors provide a good approximation to p-values determined via permutation analysis. Analyzing outcomes that are interrelated with separate models in the first stage and then associating the resulting empirical Bayes predictors in a second stage results in different mean and covariance parameter estimates from the maximum likelihood estimates generated by a MGLMM. The potential for erroneous inference from using results from these separate models increases as the magnitude of the association among the outcomes increases. Thus if computable, scatterplots of the conditionally independent empirical Bayes

  6. Bayesian inference for two-part mixed-effects model using skew distributions, with application to longitudinal semicontinuous alcohol data.

    Science.gov (United States)

    Xing, Dongyuan; Huang, Yangxin; Chen, Henian; Zhu, Yiliang; Dagne, Getachew A; Baldwin, Julie

    2017-08-01

    Semicontinuous data featured with an excessive proportion of zeros and right-skewed continuous positive values arise frequently in practice. One example would be the substance abuse/dependence symptoms data for which a substantial proportion of subjects investigated may report zero. Two-part mixed-effects models have been developed to analyze repeated measures of semicontinuous data from longitudinal studies. In this paper, we propose a flexible two-part mixed-effects model with skew distributions for correlated semicontinuous alcohol data under the framework of a Bayesian approach. The proposed model specification consists of two mixed-effects models linked by the correlated random effects: (i) a model on the occurrence of positive values using a generalized logistic mixed-effects model (Part I); and (ii) a model on the intensity of positive values using a linear mixed-effects model where the model errors follow skew distributions including skew- t and skew-normal distributions (Part II). The proposed method is illustrated with an alcohol abuse/dependence symptoms data from a longitudinal observational study, and the analytic results are reported by comparing potential models under different random-effects structures. Simulation studies are conducted to assess the performance of the proposed models and method.

  7. Random effects coefficient of determination for mixed and meta-analysis models.

    Science.gov (United States)

    Demidenko, Eugene; Sargent, James; Onega, Tracy

    2012-01-01

    The key feature of a mixed model is the presence of random effects. We have developed a coefficient, called the random effects coefficient of determination, [Formula: see text], that estimates the proportion of the conditional variance of the dependent variable explained by random effects. This coefficient takes values from 0 to 1 and indicates how strong the random effects are. The difference from the earlier suggested fixed effects coefficient of determination is emphasized. If [Formula: see text] is close to 0, there is weak support for random effects in the model because the reduction of the variance of the dependent variable due to random effects is small; consequently, random effects may be ignored and the model simplifies to standard linear regression. The value of [Formula: see text] apart from 0 indicates the evidence of the variance reduction in support of the mixed model. If random effects coefficient of determination is close to 1 the variance of random effects is very large and random effects turn into free fixed effects-the model can be estimated using the dummy variable approach. We derive explicit formulas for [Formula: see text] in three special cases: the random intercept model, the growth curve model, and meta-analysis model. Theoretical results are illustrated with three mixed model examples: (1) travel time to the nearest cancer center for women with breast cancer in the U.S., (2) cumulative time watching alcohol related scenes in movies among young U.S. teens, as a risk factor for early drinking onset, and (3) the classic example of the meta-analysis model for combination of 13 studies on tuberculosis vaccine.

  8. Linear Magnetochiral effect in Weyl Semimetals

    Science.gov (United States)

    Cortijo, Alberto

    We describe the presence of a linear magnetochiral effect in time reversal breaking Weyl semimetals. The magnetochiral effect consists in a simultaneous linear dependence of the magnetotransport coefficients with the magnetic field and a momentum vector. This simultaneous dependence is allowed by the Onsager reciprocity relations, being the separation vector between the Weyl nodes the vector that plays such role. This linear magnetochiral effect constitutes a new transport effect associated to the topological structures linked to time reversal breaking Weyl semimetals. European Union structural funds and the Comunidad de Madrid MAD2D-CM Program (S2013/MIT-3007) and MINECO (Spain) Grant No. FIS2015-73454-JIN.

  9. Mixed-effects and fMRI studies

    DEFF Research Database (Denmark)

    Friston, K.J; Stephan, K.E; Ellegaard Lund, Torben

    2005-01-01

    This note concerns mixed-effect (MFX) analyses in multisession functional magnetic resonance imaging (fMRI) studies. It clarifies the relationship between mixed-effect analyses and the two-stage 'summary statistics' procedure (Holmes, A.P., Friston, K.J., 1998. Generalisability, random effects...

  10. Linear mixing model applied to coarse spatial resolution data from multispectral satellite sensors

    Science.gov (United States)

    Holben, Brent N.; Shimabukuro, Yosio E.

    1993-01-01

    A linear mixing model was applied to coarse spatial resolution data from the NOAA Advanced Very High Resolution Radiometer. The reflective component of the 3.55-3.95 micron channel was used with the two reflective channels 0.58-0.68 micron and 0.725-1.1 micron to run a constrained least squares model to generate fraction images for an area in the west central region of Brazil. The fraction images were compared with an unsupervised classification derived from Landsat TM data acquired on the same day. The relationship between the fraction images and normalized difference vegetation index images show the potential of the unmixing techniques when using coarse spatial resolution data for global studies.

  11. Turbulence closure for mixing length theories

    Science.gov (United States)

    Jermyn, Adam S.; Lesaffre, Pierre; Tout, Christopher A.; Chitre, Shashikumar M.

    2018-05-01

    We present an approach to turbulence closure based on mixing length theory with three-dimensional fluctuations against a two-dimensional background. This model is intended to be rapidly computable for implementation in stellar evolution software and to capture a wide range of relevant phenomena with just a single free parameter, namely the mixing length. We incorporate magnetic, rotational, baroclinic, and buoyancy effects exactly within the formalism of linear growth theories with non-linear decay. We treat differential rotation effects perturbatively in the corotating frame using a novel controlled approximation, which matches the time evolution of the reference frame to arbitrary order. We then implement this model in an efficient open source code and discuss the resulting turbulent stresses and transport coefficients. We demonstrate that this model exhibits convective, baroclinic, and shear instabilities as well as the magnetorotational instability. It also exhibits non-linear saturation behaviour, and we use this to extract the asymptotic scaling of various transport coefficients in physically interesting limits.

  12. Influence assessment in censored mixed-effects models using the multivariate Student’s-t distribution

    Science.gov (United States)

    Matos, Larissa A.; Bandyopadhyay, Dipankar; Castro, Luis M.; Lachos, Victor H.

    2015-01-01

    In biomedical studies on HIV RNA dynamics, viral loads generate repeated measures that are often subjected to upper and lower detection limits, and hence these responses are either left- or right-censored. Linear and non-linear mixed-effects censored (LMEC/NLMEC) models are routinely used to analyse these longitudinal data, with normality assumptions for the random effects and residual errors. However, the derived inference may not be robust when these underlying normality assumptions are questionable, especially the presence of outliers and thick-tails. Motivated by this, Matos et al. (2013b) recently proposed an exact EM-type algorithm for LMEC/NLMEC models using a multivariate Student’s-t distribution, with closed-form expressions at the E-step. In this paper, we develop influence diagnostics for LMEC/NLMEC models using the multivariate Student’s-t density, based on the conditional expectation of the complete data log-likelihood. This partially eliminates the complexity associated with the approach of Cook (1977, 1986) for censored mixed-effects models. The new methodology is illustrated via an application to a longitudinal HIV dataset. In addition, a simulation study explores the accuracy of the proposed measures in detecting possible influential observations for heavy-tailed censored data under different perturbation and censoring schemes. PMID:26190871

  13. A novel methodology for energy performance benchmarking of buildings by means of Linear Mixed Effect Model: The case of space and DHW heating of out-patient Healthcare Centres

    International Nuclear Information System (INIS)

    Capozzoli, Alfonso; Piscitelli, Marco Savino; Neri, Francesco; Grassi, Daniele; Serale, Gianluca

    2016-01-01

    Highlights: • 100 Healthcare Centres were analyzed to assess energy consumption reference values. • A novel robust methodology for energy benchmarking process was proposed. • A Linear Mixed Effect estimation Model was used to treat heterogeneous datasets. • A nondeterministic approach was adopted to consider the uncertainty in the process. • The methodology was developed to be upgradable and generalizable to other datasets. - Abstract: The current EU energy efficiency directive 2012/27/EU defines the existing building stocks as one of the most promising potential sector for achieving energy saving. Robust methodologies aimed to quantify the potential reduction of energy consumption for large building stocks need to be developed. To this purpose, a benchmarking analysis is necessary in order to support public planners in determining how well a building is performing, in setting credible targets for improving performance or in detecting abnormal energy consumption. In the present work, a novel methodology is proposed to perform a benchmarking analysis particularly suitable for heterogeneous samples of buildings. The methodology is based on the estimation of a statistical model for energy consumption – the Linear Mixed Effects Model –, so as to account for both the fixed effects shared by all individuals within a dataset and the random effects related to particular groups/classes of individuals in the population. The groups of individuals within the population have been classified by resorting to a supervised learning technique. Under this backdrop, a Monte Carlo simulation is worked out to compute the frequency distribution of annual energy consumption and identify a reference value for each group/class of buildings. The benchmarking analysis was tested for a case study of 100 out-patient Healthcare Centres in Northern Italy, finally resulting in 12 different frequency distributions for space and Domestic Hot Water heating energy consumption, one for

  14. Transient effects in unstable ablation fronts and mixing layers in HEDP

    International Nuclear Information System (INIS)

    Clarisse, J-M; Gauthier, S; Dastugue, L; Vallet, A; Schneider, N

    2016-01-01

    We report results obtained for two elementary unstable flow configurations relevant to high energy density physics: the ablation front instability and the Rayleigh–Taylor -instability induced mixing layer. These two flows are characterized by a transience of their perturbation dynamics. In the ablative flow case, this perturbation dynamics transience takes the form of finite-durations of successive linear-perturbation evolution phases until reaching regimes of decaying oscillations. This behaviour is observed in various regimes: weakly or strongly accelerated ablation fronts, irradiation asymmetries or initial external-surface defects, and is a result of the mean-flow unsteadiness and stretching. In the case of the Rayleigh–Taylor-instability induced mixing layer, perturbation dynamics transience manifests itself through the extinction of turbulence and mixing as the flow reaches a stable state made of two stably stratified layers of pure fluids separated by an unstratified mixing layer. A second feature, also due to compressibility, takes the form of an intense acoustic wave production, mainly localized in the heavy fluid. Finally, we point out that a systematic short-term linear-perturbation dynamics analysis should be undertaken within the framework of non-normal stability theory. (paper)

  15. A brief introduction to regression designs and mixed-effects modelling by a recent convert

    DEFF Research Database (Denmark)

    Balling, Laura Winther

    2008-01-01

    This article discusses the advantages of multiple regression designs over the factorial designs traditionally used in many psycholinguistic experiments. It is shown that regression designs are typically more informative, statistically more powerful and better suited to the analysis of naturalistic...... tasks. The advantages of including both fixed and random effects are demonstrated with reference to linear mixed-effects models, and problems of collinearity, variable distribution and variable selection are discussed. The advantages of these techniques are exemplified in an analysis of a word...

  16. The mixing effects for real gases and their mixtures

    Science.gov (United States)

    Gong, M. Q.; Luo, E. C.; Wu, J. F.

    2004-10-01

    The definitions of the adiabatic and isothermal mixing effects in the mixing processes of real gases were presented in this paper. Eight substances with boiling-point temperatures from cryogenic temperature to the ambient temperature were selected from the interest of low temperature refrigeration to study their binary and multicomponent mixing effects. Detailed analyses were made on the parameters of the mixing process to know their influences on mixing effects. Those parameters include the temperatures, pressures, and mole fraction ratios of pure substances before mixing. The results show that the maximum temperature variation occurs at the saturation state of each component in the mixing process. Those components with higher boiling-point temperatures have higher isothermal mixing effects. The maximum temperature variation which is defined as the adiabatic mixing effect can even reach up to 50 K, and the isothermal mixing effect can reach about 20 kJ/mol. The possible applications of the mixing cooling effect in both open cycle and closed cycle refrigeration systems were also discussed.

  17. Local hyperspectral data multisharpening based on linear/linear-quadratic nonnegative matrix factorization by integrating lidar data

    Science.gov (United States)

    Benhalouche, Fatima Zohra; Karoui, Moussa Sofiane; Deville, Yannick; Ouamri, Abdelaziz

    2015-10-01

    In this paper, a new Spectral-Unmixing-based approach, using Nonnegative Matrix Factorization (NMF), is proposed to locally multi-sharpen hyperspectral data by integrating a Digital Surface Model (DSM) obtained from LIDAR data. In this new approach, the nature of the local mixing model is detected by using the local variance of the object elevations. The hyper/multispectral images are explored using small zones. In each zone, the variance of the object elevations is calculated from the DSM data in this zone. This variance is compared to a threshold value and the adequate linear/linearquadratic spectral unmixing technique is used in the considered zone to independently unmix hyperspectral and multispectral data, using an adequate linear/linear-quadratic NMF-based approach. The obtained spectral and spatial information thus respectively extracted from the hyper/multispectral images are then recombined in the considered zone, according to the selected mixing model. Experiments based on synthetic hyper/multispectral data are carried out to evaluate the performance of the proposed multi-sharpening approach and literature linear/linear-quadratic approaches used on the whole hyper/multispectral data. In these experiments, real DSM data are used to generate synthetic data containing linear and linear-quadratic mixed pixel zones. The DSM data are also used for locally detecting the nature of the mixing model in the proposed approach. Globally, the proposed approach yields good spatial and spectral fidelities for the multi-sharpened data and significantly outperforms the used literature methods.

  18. Behaviour of Lagrangian triangular mixed fluid finite elements

    Indian Academy of Sciences (India)

    The behaviour of mixed fluid finite elements, formulated based on the Lagrangian frame of reference, is investigated to understand the effects of locking due to incompressibility and irrotational constraints. For this purpose, both linear and quadratic mixed triangular fluid elements are formulated. It is found that there exists a ...

  19. Mixed-effects regression models in linguistics

    CERN Document Server

    Heylen, Kris; Geeraerts, Dirk

    2018-01-01

    When data consist of grouped observations or clusters, and there is a risk that measurements within the same group are not independent, group-specific random effects can be added to a regression model in order to account for such within-group associations. Regression models that contain such group-specific random effects are called mixed-effects regression models, or simply mixed models. Mixed models are a versatile tool that can handle both balanced and unbalanced datasets and that can also be applied when several layers of grouping are present in the data; these layers can either be nested or crossed.  In linguistics, as in many other fields, the use of mixed models has gained ground rapidly over the last decade. This methodological evolution enables us to build more sophisticated and arguably more realistic models, but, due to its technical complexity, also introduces new challenges. This volume brings together a number of promising new evolutions in the use of mixed models in linguistics, but also addres...

  20. Optimal Airport Surface Traffic Planning Using Mixed-Integer Linear Programming

    Directory of Open Access Journals (Sweden)

    P. C. Roling

    2008-01-01

    Full Text Available We describe an ongoing research effort pertaining to the development of a surface traffic automation system that will help controllers to better coordinate surface traffic movements related to arrival and departure traffic. More specifically, we describe the concept for a taxi-planning support tool that aims to optimize the routing and scheduling of airport surface traffic in such a way as to deconflict the taxi plans while optimizing delay, total taxi-time, or some other airport efficiency metric. Certain input parameters related to resource demand, such as the expected landing times and the expected pushback times, are rather difficult to predict accurately. Due to uncertainty in the input data driving the taxi-planning process, the taxi-planning tool is designed such that it produces solutions that are robust to uncertainty. The taxi-planning concept presented herein, which is based on mixed-integer linear programming, is designed such that it is able to adapt to perturbations in these input conditions, as well as to account for failure in the actual execution of surface trajectories. The capabilities of the tool are illustrated in a simple hypothetical airport.

  1. Learning oncogenetic networks by reducing to mixed integer linear programming.

    Science.gov (United States)

    Shahrabi Farahani, Hossein; Lagergren, Jens

    2013-01-01

    Cancer can be a result of accumulation of different types of genetic mutations such as copy number aberrations. The data from tumors are cross-sectional and do not contain the temporal order of the genetic events. Finding the order in which the genetic events have occurred and progression pathways are of vital importance in understanding the disease. In order to model cancer progression, we propose Progression Networks, a special case of Bayesian networks, that are tailored to model disease progression. Progression networks have similarities with Conjunctive Bayesian Networks (CBNs) [1],a variation of Bayesian networks also proposed for modeling disease progression. We also describe a learning algorithm for learning Bayesian networks in general and progression networks in particular. We reduce the hard problem of learning the Bayesian and progression networks to Mixed Integer Linear Programming (MILP). MILP is a Non-deterministic Polynomial-time complete (NP-complete) problem for which very good heuristics exists. We tested our algorithm on synthetic and real cytogenetic data from renal cell carcinoma. We also compared our learned progression networks with the networks proposed in earlier publications. The software is available on the website https://bitbucket.org/farahani/diprog.

  2. Mixed Integer Linear Programming based machine learning approach identifies regulators of telomerase in yeast.

    Science.gov (United States)

    Poos, Alexandra M; Maicher, André; Dieckmann, Anna K; Oswald, Marcus; Eils, Roland; Kupiec, Martin; Luke, Brian; König, Rainer

    2016-06-02

    Understanding telomere length maintenance mechanisms is central in cancer biology as their dysregulation is one of the hallmarks for immortalization of cancer cells. Important for this well-balanced control is the transcriptional regulation of the telomerase genes. We integrated Mixed Integer Linear Programming models into a comparative machine learning based approach to identify regulatory interactions that best explain the discrepancy of telomerase transcript levels in yeast mutants with deleted regulators showing aberrant telomere length, when compared to mutants with normal telomere length. We uncover novel regulators of telomerase expression, several of which affect histone levels or modifications. In particular, our results point to the transcription factors Sum1, Hst1 and Srb2 as being important for the regulation of EST1 transcription, and we validated the effect of Sum1 experimentally. We compiled our machine learning method leading to a user friendly package for R which can straightforwardly be applied to similar problems integrating gene regulator binding information and expression profiles of samples of e.g. different phenotypes, diseases or treatments. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  3. Estimating linear effects in ANOVA designs: the easy way.

    Science.gov (United States)

    Pinhas, Michal; Tzelgov, Joseph; Ganor-Stern, Dana

    2012-09-01

    Research in cognitive science has documented numerous phenomena that are approximated by linear relationships. In the domain of numerical cognition, the use of linear regression for estimating linear effects (e.g., distance and SNARC effects) became common following Fias, Brysbaert, Geypens, and d'Ydewalle's (1996) study on the SNARC effect. While their work has become the model for analyzing linear effects in the field, it requires statistical analysis of individual participants and does not provide measures of the proportions of variability accounted for (cf. Lorch & Myers, 1990). In the present methodological note, using both the distance and SNARC effects as examples, we demonstrate how linear effects can be estimated in a simple way within the framework of repeated measures analysis of variance. This method allows for estimating effect sizes in terms of both slope and proportions of variability accounted for. Finally, we show that our method can easily be extended to estimate linear interaction effects, not just linear effects calculated as main effects.

  4. A mixed-effects model approach for the statistical analysis of vocal fold viscoelastic shear properties.

    Science.gov (United States)

    Xu, Chet C; Chan, Roger W; Sun, Han; Zhan, Xiaowei

    2017-11-01

    A mixed-effects model approach was introduced in this study for the statistical analysis of rheological data of vocal fold tissues, in order to account for the data correlation caused by multiple measurements of each tissue sample across the test frequency range. Such data correlation had often been overlooked in previous studies in the past decades. The viscoelastic shear properties of the vocal fold lamina propria of two commonly used laryngeal research animal species (i.e. rabbit, porcine) were measured by a linear, controlled-strain simple-shear rheometer. Along with published canine and human rheological data, the vocal fold viscoelastic shear moduli of these animal species were compared to those of human over a frequency range of 1-250Hz using the mixed-effects models. Our results indicated that tissues of the rabbit, canine and porcine vocal fold lamina propria were significantly stiffer and more viscous than those of human. Mixed-effects models were shown to be able to more accurately analyze rheological data generated from repeated measurements. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. A Mixed-Integer Linear Programming approach to wind farm layout and inter-array cable routing

    DEFF Research Database (Denmark)

    Fischetti, Martina; Leth, John-Josef; Borchersen, Anders Bech

    2015-01-01

    A Mixed-Integer Linear Programming (MILP) approach is proposed to optimize the turbine allocation and inter-array offshore cable routing. The two problems are considered with a two steps strategy, solving the layout problem first and then the cable problem. We give an introduction to both problems...... and present the MILP models we developed to solve them. To deal with interference in the onshore cases, we propose an adaptation of the standard Jensen’s model, suitable for 3D cases. A simple Stochastic Programming variant of our model allows us to consider different wind scenarios in the optimization...

  6. Translational mixed-effects PKPD modelling of recombinant human growth hormone - from hypophysectomized rat to patients

    DEFF Research Database (Denmark)

    Thorsted, A; Thygesen, P; Agersø, H

    2016-01-01

    BACKGROUND AND PURPOSE: We aimed to develop a mechanistic mixed-effects pharmacokinetic (PK)-pharmacodynamic (PD) (PKPD) model for recombinant human growth hormone (rhGH) in hypophysectomized rats and to predict the human PKPD relationship. EXPERIMENTAL APPROACH: A non-linear mixed-effects model...... was developed from experimental PKPD studies of rhGH and effects of long-term treatment as measured by insulin-like growth factor 1 (IGF-1) and bodyweight gain in rats. Modelled parameter values were scaled to human values using the allometric approach with fixed exponents for PKs and unscaled for PDs...... s.c. administration was over predicted. After correction of the human s.c. absorption model, the induction model for IGF-1 well described the human PKPD data. CONCLUSIONS: A translational mechanistic PKPD model for rhGH was successfully developed from experimental rat data. The model links...

  7. Extended Mixed-Efects Item Response Models with the MH-RM Algorithm

    Science.gov (United States)

    Chalmers, R. Philip

    2015-01-01

    A mixed-effects item response theory (IRT) model is presented as a logical extension of the generalized linear mixed-effects modeling approach to formulating explanatory IRT models. Fixed and random coefficients in the extended model are estimated using a Metropolis-Hastings Robbins-Monro (MH-RM) stochastic imputation algorithm to accommodate for…

  8. An update on modeling dose-response relationships: Accounting for correlated data structure and heterogeneous error variance in linear and nonlinear mixed models.

    Science.gov (United States)

    Gonçalves, M A D; Bello, N M; Dritz, S S; Tokach, M D; DeRouchey, J M; Woodworth, J C; Goodband, R D

    2016-05-01

    Advanced methods for dose-response assessments are used to estimate the minimum concentrations of a nutrient that maximizes a given outcome of interest, thereby determining nutritional requirements for optimal performance. Contrary to standard modeling assumptions, experimental data often present a design structure that includes correlations between observations (i.e., blocking, nesting, etc.) as well as heterogeneity of error variances; either can mislead inference if disregarded. Our objective is to demonstrate practical implementation of linear and nonlinear mixed models for dose-response relationships accounting for correlated data structure and heterogeneous error variances. To illustrate, we modeled data from a randomized complete block design study to evaluate the standardized ileal digestible (SID) Trp:Lys ratio dose-response on G:F of nursery pigs. A base linear mixed model was fitted to explore the functional form of G:F relative to Trp:Lys ratios and assess model assumptions. Next, we fitted 3 competing dose-response mixed models to G:F, namely a quadratic polynomial (QP) model, a broken-line linear (BLL) ascending model, and a broken-line quadratic (BLQ) ascending model, all of which included heteroskedastic specifications, as dictated by the base model. The GLIMMIX procedure of SAS (version 9.4) was used to fit the base and QP models and the NLMIXED procedure was used to fit the BLL and BLQ models. We further illustrated the use of a grid search of initial parameter values to facilitate convergence and parameter estimation in nonlinear mixed models. Fit between competing dose-response models was compared using a maximum likelihood-based Bayesian information criterion (BIC). The QP, BLL, and BLQ models fitted on G:F of nursery pigs yielded BIC values of 353.7, 343.4, and 345.2, respectively, thus indicating a better fit of the BLL model. The BLL breakpoint estimate of the SID Trp:Lys ratio was 16.5% (95% confidence interval [16.1, 17.0]). Problems with

  9. Identification of hydrometeor mixtures in polarimetric radar measurements and their linear de-mixing

    Science.gov (United States)

    Besic, Nikola; Ventura, Jordi Figueras i.; Grazioli, Jacopo; Gabella, Marco; Germann, Urs; Berne, Alexis

    2017-04-01

    The issue of hydrometeor mixtures affects radar sampling volumes without a clear dominant hydrometeor type. Containing a number of different hydrometeor types which significantly contribute to the polarimetric variables, these volumes are likely to occur in the vicinity of the melting layer and mainly, at large distance from a given radar. Motivated by potential benefits for both quantitative and qualitative applications of dual-pol radar, we propose a method for the identification of hydrometeor mixtures and their subsequent linear de-mixing. This method is intrinsically related to our recently proposed semi-supervised approach for hydrometeor classification. The mentioned classification approach [1] performs labeling of radar sampling volumes by using as a criterion the Euclidean distance with respect to five-dimensional centroids, depicting nine hydrometeor classes. The positions of the centroids in the space formed by four radar moments and one external parameter (phase indicator), are derived through a technique of k-medoids clustering, applied on a selected representative set of radar observations, and coupled with statistical testing which introduces the assumed microphysical properties of the different hydrometeor types. Aside from a hydrometeor type label, each radar sampling volume is characterized by an entropy estimate, indicating the uncertainty of the classification. Here, we revisit the concept of entropy presented in [1], in order to emphasize its presumed potential for the identification of hydrometeor mixtures. The calculation of entropy is based on the estimate of the probability (pi ) that the observation corresponds to the hydrometeor type i (i = 1,ṡṡṡ9) . The probability is derived from the Euclidean distance (di ) of the observation to the centroid characterizing the hydrometeor type i . The parametrization of the d → p transform is conducted in a controlled environment, using synthetic polarimetric radar datasets. It ensures balanced

  10. Axial displacement of external and internal implant-abutment connection evaluated by linear mixed model analysis.

    Science.gov (United States)

    Seol, Hyon-Woo; Heo, Seong-Joo; Koak, Jai-Young; Kim, Seong-Kyun; Kim, Shin-Koo

    2015-01-01

    To analyze the axial displacement of external and internal implant-abutment connection after cyclic loading. Three groups of external abutments (Ext group), an internal tapered one-piece-type abutment (Int-1 group), and an internal tapered two-piece-type abutment (Int-2 group) were prepared. Cyclic loading was applied to implant-abutment assemblies at 150 N with a frequency of 3 Hz. The amount of axial displacement, the Periotest values (PTVs), and the removal torque values(RTVs) were measured. Both a repeated measures analysis of variance and pattern analysis based on the linear mixed model were used for statistical analysis. Scanning electron microscopy (SEM) was used to evaluate the surface of the implant-abutment connection. The mean axial displacements after 1,000,000 cycles were 0.6 μm in the Ext group, 3.7 μm in the Int-1 group, and 9.0 μm in the Int-2 group. Pattern analysis revealed a breakpoint at 171 cycles. The Ext group showed no declining pattern, and the Int-1 group showed no declining pattern after the breakpoint (171 cycles). However, the Int-2 group experienced continuous axial displacement. After cyclic loading, the PTV decreased in the Int-2 group, and the RTV decreased in all groups. SEM imaging revealed surface wear in all groups. Axial displacement and surface wear occurred in all groups. The PTVs remained stable, but the RTVs decreased after cyclic loading. Based on linear mixed model analysis, the Ext and Int-1 groups' axial displacements plateaued after little cyclic loading. The Int-2 group's rate of axial displacement slowed after 100,000 cycles.

  11. Spatiotemporal chaos in mixed linear-nonlinear two-dimensional coupled logistic map lattice

    Science.gov (United States)

    Zhang, Ying-Qian; He, Yi; Wang, Xing-Yuan

    2018-01-01

    We investigate a new spatiotemporal dynamics with mixing degrees of nonlinear chaotic maps for spatial coupling connections based on 2DCML. Here, the coupling methods are including with linear neighborhood coupling and the nonlinear chaotic map coupling of lattices, and the former 2DCML system is only a special case in the proposed system. In this paper the criteria such Kolmogorov-Sinai entropy density and universality, bifurcation diagrams, space-amplitude and snapshot pattern diagrams are provided in order to investigate the chaotic behaviors of the proposed system. Furthermore, we also investigate the parameter ranges of the proposed system which holds those features in comparisons with those of the 2DCML system and the MLNCML system. Theoretical analysis and computer simulation indicate that the proposed system contains features such as the higher percentage of lattices in chaotic behaviors for most of parameters, less periodic windows in bifurcation diagrams and the larger range of parameters for chaotic behaviors, which is more suitable for cryptography.

  12. Non-linear Growth Models in Mplus and SAS

    Science.gov (United States)

    Grimm, Kevin J.; Ram, Nilam

    2013-01-01

    Non-linear growth curves or growth curves that follow a specified non-linear function in time enable researchers to model complex developmental patterns with parameters that are easily interpretable. In this paper we describe how a variety of sigmoid curves can be fit using the Mplus structural modeling program and the non-linear mixed-effects modeling procedure NLMIXED in SAS. Using longitudinal achievement data collected as part of a study examining the effects of preschool instruction on academic gain we illustrate the procedures for fitting growth models of logistic, Gompertz, and Richards functions. Brief notes regarding the practical benefits, limitations, and choices faced in the fitting and estimation of such models are included. PMID:23882134

  13. Generalized linear mixed models modern concepts, methods and applications

    CERN Document Server

    Stroup, Walter W

    2012-01-01

    PART I The Big PictureModeling BasicsWhat Is a Model?Two Model Forms: Model Equation and Probability DistributionTypes of Model EffectsWriting Models in Matrix FormSummary: Essential Elements for a Complete Statement of the ModelDesign MattersIntroductory Ideas for Translating Design and Objectives into ModelsDescribing ""Data Architecture"" to Facilitate Model SpecificationFrom Plot Plan to Linear PredictorDistribution MattersMore Complex Example: Multiple Factors with Different Units of ReplicationSetting the StageGoals for Inference with Models: OverviewBasic Tools of InferenceIssue I: Data

  14. Spatial generalized linear mixed models of electric power outages due to hurricanes and ice storms

    International Nuclear Information System (INIS)

    Liu Haibin; Davidson, Rachel A.; Apanasovich, Tatiyana V.

    2008-01-01

    This paper presents new statistical models that predict the number of hurricane- and ice storm-related electric power outages likely to occur in each 3 kmx3 km grid cell in a region. The models are based on a large database of recent outages experienced by three major East Coast power companies in six hurricanes and eight ice storms. A spatial generalized linear mixed modeling (GLMM) approach was used in which spatial correlation is incorporated through random effects. Models were fitted using a composite likelihood approach and the covariance matrix was estimated empirically. A simulation study was conducted to test the model estimation procedure, and model training, validation, and testing were done to select the best models and assess their predictive power. The final hurricane model includes number of protective devices, maximum gust wind speed, hurricane indicator, and company indicator covariates. The final ice storm model includes number of protective devices, ice thickness, and ice storm indicator covariates. The models should be useful for power companies as they plan for future storms. The statistical modeling approach offers a new way to assess the reliability of electric power and other infrastructure systems in extreme events

  15. Advantage of make-to-stock strategy based on linear mixed-effect model: a comparison with regression, autoregressive, times series, and exponential smoothing models

    Directory of Open Access Journals (Sweden)

    Yu-Pin Liao

    2017-11-01

    Full Text Available In the past few decades, demand forecasting has become relatively difficult due to rapid changes in the global environment. This research illustrates the use of the make-to-stock (MTS production strategy in order to explain how forecasting plays an essential role in business management. The linear mixed-effect (LME model has been extensively developed and is widely applied in various fields. However, no study has used the LME model for business forecasting. We suggest that the LME model be used as a tool for prediction and to overcome environment complexity. The data analysis is based on real data in an international display company, where the company needs accurate demand forecasting before adopting a MTS strategy. The forecasting result from the LME model is compared to the commonly used approaches, including the regression model, autoregressive model, times series model, and exponential smoothing model, with the results revealing that prediction performance provided by the LME model is more stable than using the other methods. Furthermore, product types in the data are regarded as a random effect in the LME model, hence demands of all types can be predicted simultaneously using a single LME model. However, some approaches require splitting the data into different type categories, and then predicting the type demand by establishing a model for each type. This feature also demonstrates the practicability of the LME model in real business operations.

  16. Analog and mixed-signal electronics

    CERN Document Server

    Stephan, Karl

    2015-01-01

    A practical guide to analog and mixed-signal electronics, with an emphasis on design problems and applications This book provides an in-depth coverage of essential analog and mixed-signal topics such as power amplifiers, active filters, noise and dynamic range, analog-to-digital and digital-to-analog conversion techniques, phase-locked loops, and switching power supplies. Readers will learn the basics of linear systems, types of nonlinearities and their effects, op-amp circuits, the high-gain analog filter-amplifier, and signal generation. The author uses system design examples to motivate

  17. Model Predictive Control for Linear Complementarity and Extended Linear Complementarity Systems

    Directory of Open Access Journals (Sweden)

    Bambang Riyanto

    2005-11-01

    Full Text Available In this paper, we propose model predictive control method for linear complementarity and extended linear complementarity systems by formulating optimization along prediction horizon as mixed integer quadratic program. Such systems contain interaction between continuous dynamics and discrete event systems, and therefore, can be categorized as hybrid systems. As linear complementarity and extended linear complementarity systems finds applications in different research areas, such as impact mechanical systems, traffic control and process control, this work will contribute to the development of control design method for those areas as well, as shown by three given examples.

  18. Controlling attribute effect in linear regression

    KAUST Repository

    Calders, Toon; Karim, Asim A.; Kamiran, Faisal; Ali, Wasif Mohammad; Zhang, Xiangliang

    2013-01-01

    In data mining we often have to learn from biased data, because, for instance, data comes from different batches or there was a gender or racial bias in the collection of social data. In some applications it may be necessary to explicitly control this bias in the models we learn from the data. This paper is the first to study learning linear regression models under constraints that control the biasing effect of a given attribute such as gender or batch number. We show how propensity modeling can be used for factoring out the part of the bias that can be justified by externally provided explanatory attributes. Then we analytically derive linear models that minimize squared error while controlling the bias by imposing constraints on the mean outcome or residuals of the models. Experiments with discrimination-aware crime prediction and batch effect normalization tasks show that the proposed techniques are successful in controlling attribute effects in linear regression models. © 2013 IEEE.

  19. Controlling attribute effect in linear regression

    KAUST Repository

    Calders, Toon

    2013-12-01

    In data mining we often have to learn from biased data, because, for instance, data comes from different batches or there was a gender or racial bias in the collection of social data. In some applications it may be necessary to explicitly control this bias in the models we learn from the data. This paper is the first to study learning linear regression models under constraints that control the biasing effect of a given attribute such as gender or batch number. We show how propensity modeling can be used for factoring out the part of the bias that can be justified by externally provided explanatory attributes. Then we analytically derive linear models that minimize squared error while controlling the bias by imposing constraints on the mean outcome or residuals of the models. Experiments with discrimination-aware crime prediction and batch effect normalization tasks show that the proposed techniques are successful in controlling attribute effects in linear regression models. © 2013 IEEE.

  20. Non Linear Analyses for the Evaluation of Seismic Behavior of Mixed R.C.-Masonry Structures

    International Nuclear Information System (INIS)

    Liberatore, Laura; Tocci, Cesare; Masiani, Renato

    2008-01-01

    In this work the seismic behavior of masonry buildings with mixed structural system, consisting of perimeter masonry walls and internal r.c. frames, is studied by means of non linear static (pushover) analyses. Several aspects, like the distribution of seismic action between masonry and r.c. elements, the local and global behavior of the structure, the crisis of the connections and the attainment of the ultimate strength of the whole structure are examined. The influence of some parameters, such as the masonry compressive and tensile strength, on the structural behavior is investigated. The numerical analyses are also repeated on a building in which the r.c. internal frames are replaced with masonry walls

  1. From diets to foods: using linear programming to formulate a nutritious, minimum-cost porridge mix for children aged 1 to 2 years.

    Science.gov (United States)

    De Carvalho, Irene Stuart Torrié; Granfeldt, Yvonne; Dejmek, Petr; Håkansson, Andreas

    2015-03-01

    Linear programming has been used extensively as a tool for nutritional recommendations. Extending the methodology to food formulation presents new challenges, since not all combinations of nutritious ingredients will produce an acceptable food. Furthermore, it would help in implementation and in ensuring the feasibility of the suggested recommendations. To extend the previously used linear programming methodology from diet optimization to food formulation using consistency constraints. In addition, to exemplify usability using the case of a porridge mix formulation for emergency situations in rural Mozambique. The linear programming method was extended with a consistency constraint based on previously published empirical studies on swelling of starch in soft porridges. The new method was exemplified using the formulation of a nutritious, minimum-cost porridge mix for children aged 1 to 2 years for use as a complete relief food, based primarily on local ingredients, in rural Mozambique. A nutritious porridge fulfilling the consistency constraints was found; however, the minimum cost was unfeasible with local ingredients only. This illustrates the challenges in formulating nutritious yet economically feasible foods from local ingredients. The high cost was caused by the high cost of mineral-rich foods. A nutritious, low-cost porridge that fulfills the consistency constraints was obtained by including supplements of zinc and calcium salts as ingredients. The optimizations were successful in fulfilling all constraints and provided a feasible porridge, showing that the extended constrained linear programming methodology provides a systematic tool for designing nutritious foods.

  2. Non-linear effects in the Boltzmann equation

    International Nuclear Information System (INIS)

    Barrachina, R.O.

    1985-01-01

    The Boltzmann equation is studied by defining an integral transformation of the energy distribution function for an isotropic and homogeneous gas. This transformation may be interpreted as a linear superposition of equilibrium states with variable temperatures. It is shown that the temporal evolution features of the distribution function are determined by the singularities of said transformation. This method is applied to Maxwell and Very Hard Particle interaction models. For the latter, the solution of the Boltzmann equation with the solution of its linearized version is compared, finding out many basic discrepancies and non-linear effects. This gives a hint to propose a new rational approximation method with a clear physical meaning. Applying this technique, the relaxation features of the BKW (Bobylev, Krook anf Wu) mode is analyzed, finding a conclusive counter-example for the Krook and Wu conjecture. The anisotropic Boltzmann equation for Maxwell models is solved as an expansion in terms of the eigenfunctions of the corresponding linearized collision operator, finding interesting transient overpopulation and underpopulation effects at thermal energies as well as a new preferential spreading effect. By analyzing the initial collision, a criterion is established to deduce the general features of the final approach to equilibrium. Finally, it is shown how to improve the convergence of the eigenfunction expansion for high energy underpopulated distribution functions. As an application of this theory, the linear cascade model for sputtering is analyzed, thus finding out that many differences experimentally observed are due to non-linear effects. (M.E.L.) [es

  3. Comparison of height-diameter models based on geographically weighted regressions and linear mixed modelling applied to large scale forest inventory data

    Energy Technology Data Exchange (ETDEWEB)

    Quirós Segovia, M.; Condés Ruiz, S.; Drápela, K.

    2016-07-01

    Aim of the study: The main objective of this study was to test Geographically Weighted Regression (GWR) for developing height-diameter curves for forests on a large scale and to compare it with Linear Mixed Models (LMM). Area of study: Monospecific stands of Pinus halepensis Mill. located in the region of Murcia (Southeast Spain). Materials and Methods: The dataset consisted of 230 sample plots (2582 trees) from the Third Spanish National Forest Inventory (SNFI) randomly split into training data (152 plots) and validation data (78 plots). Two different methodologies were used for modelling local (Petterson) and generalized height-diameter relationships (Cañadas I): GWR, with different bandwidths, and linear mixed models. Finally, the quality of the estimated models was compared throughout statistical analysis. Main results: In general, both LMM and GWR provide better prediction capability when applied to a generalized height-diameter function than when applied to a local one, with R2 values increasing from around 0.6 to 0.7 in the model validation. Bias and RMSE were also lower for the generalized function. However, error analysis showed that there were no large differences between these two methodologies, evidencing that GWR provides results which are as good as the more frequently used LMM methodology, at least when no additional measurements are available for calibrating. Research highlights: GWR is a type of spatial analysis for exploring spatially heterogeneous processes. GWR can model spatial variation in tree height-diameter relationship and its regression quality is comparable to LMM. The advantage of GWR over LMM is the possibility to determine the spatial location of every parameter without additional measurements. Abbreviations: GWR (Geographically Weighted Regression); LMM (Linear Mixed Model); SNFI (Spanish National Forest Inventory). (Author)

  4. Comparison of linear and non-linear models for predicting energy expenditure from raw accelerometer data.

    Science.gov (United States)

    Montoye, Alexander H K; Begum, Munni; Henning, Zachary; Pfeiffer, Karin A

    2017-02-01

    This study had three purposes, all related to evaluating energy expenditure (EE) prediction accuracy from body-worn accelerometers: (1) compare linear regression to linear mixed models, (2) compare linear models to artificial neural network models, and (3) compare accuracy of accelerometers placed on the hip, thigh, and wrists. Forty individuals performed 13 activities in a 90 min semi-structured, laboratory-based protocol. Participants wore accelerometers on the right hip, right thigh, and both wrists and a portable metabolic analyzer (EE criterion). Four EE prediction models were developed for each accelerometer: linear regression, linear mixed, and two ANN models. EE prediction accuracy was assessed using correlations, root mean square error (RMSE), and bias and was compared across models and accelerometers using repeated-measures analysis of variance. For all accelerometer placements, there were no significant differences for correlations or RMSE between linear regression and linear mixed models (correlations: r  =  0.71-0.88, RMSE: 1.11-1.61 METs; p  >  0.05). For the thigh-worn accelerometer, there were no differences in correlations or RMSE between linear and ANN models (ANN-correlations: r  =  0.89, RMSE: 1.07-1.08 METs. Linear models-correlations: r  =  0.88, RMSE: 1.10-1.11 METs; p  >  0.05). Conversely, one ANN had higher correlations and lower RMSE than both linear models for the hip (ANN-correlation: r  =  0.88, RMSE: 1.12 METs. Linear models-correlations: r  =  0.86, RMSE: 1.18-1.19 METs; p  linear models for the wrist-worn accelerometers (ANN-correlations: r  =  0.82-0.84, RMSE: 1.26-1.32 METs. Linear models-correlations: r  =  0.71-0.73, RMSE: 1.55-1.61 METs; p  models offer a significant improvement in EE prediction accuracy over linear models. Conversely, linear models showed similar EE prediction accuracy to machine learning models for hip- and thigh

  5. Mixed mobile ion effect in fluorozincate glasses

    International Nuclear Information System (INIS)

    Ghosh, S; Ghosh, A

    2005-01-01

    The mixed mobile ion effect has been investigated for the first time in zinc fluoride glasses where in addition to alkali cations fluorine anions also participate in the diffusion process, unlike mixed alkali oxide glasses. The minimum in the conductivity, conductivity relaxation frequency, crossover frequency and decoupling index indicates the existence of the mixed mobile ion effect in these fluoride glasses. It has been observed that the non-exponential parameter and the frequency exponent are independent of temperature. It has been established that alkali ions and fluorine anions exhibit lower dimensionality of the conduction pathways in mixed alkali zinc fluoride glasses than that in the single alkali lithium based zinc fluoride glasses while they are migrating. From the scaling of the conductivity spectra, it has been established that the relaxation dynamics in mixed alkali zinc fluoride glasses is independent of temperature and composition

  6. Linear mixed models in sensometrics

    DEFF Research Database (Denmark)

    Kuznetsova, Alexandra

    quality of decision making in Danish as well as international food companies and other companies using the same methods. The two open-source R packages lmerTest and SensMixed implement and support the methodological developments in the research papers as well as the ANOVA modelling part of the Consumer...... an open-source software tool ConsumerCheck was developed in this project and now is available for everyone. will represent a major step forward when concerns this important problem in modern consumer driven product development. Standard statistical software packages can be used for some of the purposes......Today’s companies and researchers gather large amounts of data of different kind. In consumer studies the objective is the collection of the data to better understand consumer acceptance of products. In such studies a number of persons (generally not trained) are selected in order to score products...

  7. Application of mixed-integer linear programming in a car seats assembling process

    Directory of Open Access Journals (Sweden)

    Jorge Iván Perez Rave

    2011-12-01

    Full Text Available In this paper, a decision problem involving a car parts manufacturing company is modeled in order to prepare the company for an increase in demand. Mixed-integer linear programming was used with the following decision variables: creating a second shift, purchasing additional equipment, determining the required work force, and other alternatives involving new manners of work distribution that make it possible to separate certain operations from some workplaces and integrate them into others to minimize production costs. The model was solved using GAMS. The solution consisted of programming 19 workers under a configuration that merges two workplaces and separates some operations from some workplaces. The solution did not involve purchasing additional machinery or creating a second shift. As a result, the manufacturing paradigms that had been valid in the company for over 14 years were broken. This study allowed the company to increase its productivity and obtain significant savings. It also shows the benefits of joint work between academia and companies, and provides useful information for professors, students and engineers regarding production and continuous improvement.

  8. Entropic effects, shape, and size of mixed micelles formed by copolymers with complex architectures

    Science.gov (United States)

    Kalogirou, Andreas; Gergidis, Leonidas N.; Moultos, Othonas; Vlahos, Costas

    2015-11-01

    The entropic effects in the comicellization behavior of amphiphilic A B copolymers differing in the chain size of solvophilic A parts were studied by means of molecular dynamics simulations. In particular, mixtures of miktoarm star copolymers differing in the molecular weight of solvophilic arms were investigated. We found that the critical micelle concentration values show a positive deviation from the analytical predictions of the molecular theory of comicellization for chemically identical copolymers. This can be attributed to the effective interactions between copolymers originated from the arm size asymmetry. The effective interactions induce a very small decrease in the aggregation number of preferential micelles triggering the nonrandom mixing between the solvophilic moieties in the corona. Additionally, in order to specify how the chain architecture affects the size distribution and the shape of mixed micelles we studied star-shaped, H-shaped, and homo-linked-rings-linear mixtures. In the first case the individual constituents form micelles with preferential and wide aggregation numbers and in the latter case the individual constituents form wormlike and spherical micelles.

  9. Energy mix and employment effects

    International Nuclear Information System (INIS)

    Wodopia, F.J.

    2005-01-01

    ''Energy Mix and Employment Effects'' is a subject not to be reduced to the so-called ''job argument''. It also involves the question whether it will be possible to achieve consensus again about the composition of a balanced sustainable energy mix. This term must not be interpreted in a static sense; after all, the framework conditions of energy policy are changing. However, this must not render energy policy unsteady. This requirement should be imposed on economic policy in general, i.e. political interventions, it they are really unavoidable, must be predictable on a long term. This contribution also examines the meaning of the term ''energy mix.'' Aspects of the debate about the climate, especially potential factors influencing the climate, are discussed against the backdrop of scientific validity. Other key points covered are the description and analysis of the energy policy framework. One major aspect under study are all kinds of ''subsidies'' of energy resources and the consequences to the whole economy arising from these financial support mechanisms. The findings are projected onto the employment effects. Finally, the question is raised how to design an energy mix sustainable for the future, and how to achieve it politically and in society. (orig.)

  10. Testing effects in mixed- versus pure-list designs.

    Science.gov (United States)

    Rowland, Christopher A; Littrell-Baez, Megan K; Sensenig, Amanda E; DeLosh, Edward L

    2014-08-01

    In the present study, we investigated the role of list composition in the testing effect. Across three experiments, participants learned items through study and initial testing or study and restudy. List composition was manipulated, such that tested and restudied items appeared either intermixed in the same lists (mixed lists) or in separate lists (pure lists). In Experiment 1, half of the participants received mixed lists and half received pure lists. In Experiment 2, all participants were given both mixed and pure lists. Experiment 3 followed Erlebacher's (Psychological Bulletin, 84, 212-219, 1977) method, such that mixed lists, pure tested lists, and pure restudied lists were given to independent groups. Across all three experiments, the final recall results revealed significant testing effects for both mixed and pure lists, with no reliable difference in the magnitude of the testing advantage across list designs. This finding suggests that the testing effect is not subject to a key boundary condition-list design-that impacts other memory phenomena, including the generation effect.

  11. Generalized Linear Mixed Model Analysis of Urban-Rural Differences in Social and Behavioral Factors for Colorectal Cancer Screening

    Science.gov (United States)

    Wang, Ke-Sheng; Liu, Xuefeng; Ategbole, Muyiwa; Xie, Xin; Liu, Ying; Xu, Chun; Xie, Changchun; Sha, Zhanxin

    2017-09-27

    Objective: Screening for colorectal cancer (CRC) can reduce disease incidence, morbidity, and mortality. However, few studies have investigated the urban-rural differences in social and behavioral factors influencing CRC screening. The objective of the study was to investigate the potential factors across urban-rural groups on the usage of CRC screening. Methods: A total of 38,505 adults (aged ≥40 years) were selected from the 2009 California Health Interview Survey (CHIS) data - the latest CHIS data on CRC screening. The weighted generalized linear mixed-model (WGLIMM) was used to deal with this hierarchical structure data. Weighted simple and multiple mixed logistic regression analyses in SAS ver. 9.4 were used to obtain the odds ratios (ORs) and their 95% confidence intervals (CIs). Results: The overall prevalence of CRC screening was 48.1% while the prevalence in four residence groups - urban, second city, suburban, and town/rural, were 45.8%, 46.9%, 53.7% and 50.1%, respectively. The results of WGLIMM analysis showed that there was residence effect (pregression analysis revealed that age, race, marital status, education level, employment stats, binge drinking, and smoking status were associated with CRC screening (p<0.05). Stratified by residence regions, age and poverty level showed associations with CRC screening in all four residence groups. Education level was positively associated with CRC screening in second city and suburban. Infrequent binge drinking was associated with CRC screening in urban and suburban; while current smoking was a protective factor in urban and town/rural groups. Conclusions: Mixed models are useful to deal with the clustered survey data. Social factors and behavioral factors (binge drinking and smoking) were associated with CRC screening and the associations were affected by living areas such as urban and rural regions. Creative Commons Attribution License

  12. The effect of non-uniform mass loading on the linear, temporal development of particle-laden shear layers

    Energy Technology Data Exchange (ETDEWEB)

    Senatore, Giacomo [Department of Aerospace Engineering, Universita di Pisa, Pisa 56122 (Italy); Davis, Sean; Jacobs, Gustaaf, E-mail: gjacobs@mail.sdsu.edu [Department of Aerospace Engineering and Engineering Mechanics, San Diego State University, San Diego, 92182 California (United States)

    2015-03-15

    The effect of non-uniformity in bulk particle mass loading on the linear development of a particle-laden shear layer is analyzed by means of a stochastic Eulerian-Eulerian model. From the set of governing equations of the two-fluid model, a modified Rayleigh equation is derived that governs the linear growth of a spatially periodic disturbance. Eigenvalues for this Rayleigh equation are determined numerically using proper conditions at the co-flowing gas and particle interface locations. For the first time, it is shown that non-uniform loading of small-inertia particles (Stokes number (St) <0.2) may destabilize the inviscid mixing layer development as compared to the pure-gas flow. The destabilization is triggered by an energy transfer rate that globally flows from the particle phase to the gas phase. For intermediate St (1 < St < 10), a maximum stabilizing effect is computed, while at larger St, two unstable modes may coexist. The growth rate computations from linear stability analysis are verified numerically through simulations based on an Eulerian-Lagrangian (EL) model based on the inviscid Euler equations and a point particle model. The growth rates found in numerical experiments using the EL method are in very good agreement with growth rates from the linear stability analysis and validate the destabilizing effect induced by the presence of particles with low St.

  13. Effects of socioeconomic position and social mobility on linear growth from early childhood until adolescence.

    Science.gov (United States)

    Muraro, Ana Paula; Souza, Rita Adriana Gomes de; Rodrigues, Paulo Rogério Melo; Ferreira, Márcia Gonçalves; Sichieri, Rosely

    2017-01-01

    To assess the effect of socioeconomic position (SEP) in childhood and social mobility on linear growth through adolescence in a population-based cohort. Children born in Cuiabá-MT, central-western Brazil, were evaluated during 1994 - 1999. They were first assessed during 1999 - 2000 (0 - 5 years) and again during 2009 - 2011 (10 - 17 years), and their height-for-age was evaluated during these two periods.Awealth index was used to classify the SEP of each child's family as low, medium, or high. Social mobility was categorized as upward mobility or no upward mobility. Linear mixed models were used. We evaluated 1,716 children (71.4% of baseline) after 10 years, and 60.6% of the families showed upward mobility, with a higher percentage among the lowest economic classes. A higher height-for-age was also observed among those from families with a high SEP both in childhood (low SEP= -0.35 z-score; high SEP= 0.15 z-score, p childhood and social mobility did not greatly influence linear growth through childhood in this central-western Brazilian cohort.

  14. European mixed forests

    DEFF Research Database (Denmark)

    Bravo-Oviedo, Andres; Pretzsch, Hans; Ammer, Christian

    2014-01-01

    Aim of study: We aim at (i) developing a reference definition of mixed forests in order to harmonize comparative research in mixed forests and (ii) review the research perspectives in mixed forests. Area of study: The definition is developed in Europe but can be tested worldwide. Material...... and Methods: Review of existent definitions of mixed forests based and literature review encompassing dynamics, management and economic valuation of mixed forests. Main results: A mixed forest is defined as a forest unit, excluding linear formations, where at least two tree species coexist at any...... density in mixed forests, (iii) conversion of monocultures to mixed-species forest and (iv) economic valuation of ecosystem services provided by mixed forests. Research highlights: The definition is considered a high-level one which encompasses previous attempts to define mixed forests. Current fields...

  15. Mixed alkaline earth effect in sodium aluminosilicate glasses

    DEFF Research Database (Denmark)

    Kjeldsen, Jonas; Smedskjær, Morten Mattrup; Mauro, John C.

    2013-01-01

    While the mixed alkali effect has received significant attention in the glass literature, the mixed alkaline earth effect has not been thoroughly studied. Here, we investigate the latter effect by partial substitution of magnesium for calcium in sodium aluminosilicate glasses. We use Raman and NMR...

  16. Visualizing Statistical Mix Effects and Simpson's Paradox.

    Science.gov (United States)

    Armstrong, Zan; Wattenberg, Martin

    2014-12-01

    We discuss how "mix effects" can surprise users of visualizations and potentially lead them to incorrect conclusions. This statistical issue (also known as "omitted variable bias" or, in extreme cases, as "Simpson's paradox") is widespread and can affect any visualization in which the quantity of interest is an aggregated value such as a weighted sum or average. Our first contribution is to document how mix effects can be a serious issue for visualizations, and we analyze how mix effects can cause problems in a variety of popular visualization techniques, from bar charts to treemaps. Our second contribution is a new technique, the "comet chart," that is meant to ameliorate some of these issues.

  17. Mixed Alkali Effect in (40-x)K2O-xLi2O-10Na2O-50B2O3 Glasses - Physical and Optical Absorption Studies

    Science.gov (United States)

    Samee, M. A.; Ahmmad, Shaikh Kareem; Taqiullah, Sair. Md.; Edukondalu, A.; Bale, Shashidhar; Rahman, Syed

    So far only a handful of publications have been concerned with the study of the mixed alkali effect in borate glasses containing three types of alkali ions. In the present work, the mixed alkali effect (MAE) has been investigated in the glass system (40-x) K2O-x Li2O -10Na2O-50B2O3.(0≤x≤40 mol%) through density and modulated DSC studies. The density and glass transition temperature of the present glasses varies non-linearly exhibiting mixed alkali effect. We report the mixed alkali effect in the present glasses through optical properties. From the absorption edge studies, the various values of optical band gap (Eo) and Urbach energy (ΔE) have been evaluated. The values of Eo and ΔE show non-linear behavior with compositional parameter showing the mixed alkali effect. The band gap energy based average electronic polarizability of oxide ions αO2-(Eo), optical basicity A(Eo), and Yamashita-Kurosawa’s interaction parameter A(Eo) have been examined to check the correlations among them and bonding character. Based on good correlation among electronic polarizability of oxide ions, optical basicity and interaction parameter, the present K2O- Li2O-Na2O-B2O3 glasses are classified as normal ionic (basic) oxides.

  18. Deliberate practice predicts performance over time in adolescent chess players and drop-outs: a linear mixed models analysis.

    Science.gov (United States)

    de Bruin, Anique B H; Smits, Niels; Rikers, Remy M J P; Schmidt, Henk G

    2008-11-01

    In this study, the longitudinal relation between deliberate practice and performance in chess was examined using a linear mixed models analysis. The practice activities and performance ratings of young elite chess players, who were either in, or had dropped out of the Dutch national chess training, were analysed since they had started playing chess seriously. The results revealed that deliberate practice (i.e. serious chess study alone and serious chess play) strongly contributed to chess performance. The influence of deliberate practice was not only observable in current performance, but also over chess players' careers. Moreover, although the drop-outs' chess ratings developed more slowly over time, both the persistent and drop-out chess players benefited to the same extent from investments in deliberate practice. Finally, the effect of gender on chess performance proved to be much smaller than the effect of deliberate practice. This study provides longitudinal support for the monotonic benefits assumption of deliberate practice, by showing that over chess players' careers, deliberate practice has a significant effect on performance, and to the same extent for chess players of different ultimate performance levels. The results of this study are not in line with critique raised against the deliberate practice theory that the factors deliberate practice and talent could be confounded.

  19. Further Improvements to Linear Mixed Models for Genome-Wide Association Studies

    Science.gov (United States)

    Widmer, Christian; Lippert, Christoph; Weissbrod, Omer; Fusi, Nicolo; Kadie, Carl; Davidson, Robert; Listgarten, Jennifer; Heckerman, David

    2014-11-01

    We examine improvements to the linear mixed model (LMM) that better correct for population structure and family relatedness in genome-wide association studies (GWAS). LMMs rely on the estimation of a genetic similarity matrix (GSM), which encodes the pairwise similarity between every two individuals in a cohort. These similarities are estimated from single nucleotide polymorphisms (SNPs) or other genetic variants. Traditionally, all available SNPs are used to estimate the GSM. In empirical studies across a wide range of synthetic and real data, we find that modifications to this approach improve GWAS performance as measured by type I error control and power. Specifically, when only population structure is present, a GSM constructed from SNPs that well predict the phenotype in combination with principal components as covariates controls type I error and yields more power than the traditional LMM. In any setting, with or without population structure or family relatedness, a GSM consisting of a mixture of two component GSMs, one constructed from all SNPs and another constructed from SNPs that well predict the phenotype again controls type I error and yields more power than the traditional LMM. Software implementing these improvements and the experimental comparisons are available at http://microsoft.com/science.

  20. Kriging with mixed effects models

    Directory of Open Access Journals (Sweden)

    Alessio Pollice

    2007-10-01

    Full Text Available In this paper the effectiveness of the use of mixed effects models for estimation and prediction purposes in spatial statistics for continuous data is reviewed in the classical and Bayesian frameworks. A case study on agricultural data is also provided.

  1. Marketing mix effects on private labels brand equity

    OpenAIRE

    Abril, Carmen; Rodriguez-Cánovas, Belén

    2017-01-01

    The present study explores some marketing mix effects on private labels brand equity creation. The research aims to study the effect of some elements under retailer's direct control such as in-store communications, in-store promotions and distribution intensity as well as other general marketing mix levers such as advertising, perceived price, and monetary promotions. The results indicate that the most efficient marketing mix tools for private label brand equity creation are private labels in...

  2. Mixed models for predictive modeling in actuarial science

    NARCIS (Netherlands)

    Antonio, K.; Zhang, Y.

    2012-01-01

    We start with a general discussion of mixed (also called multilevel) models and continue with illustrating specific (actuarial) applications of this type of models. Technical details on (linear, generalized, non-linear) mixed models follow: model assumptions, specifications, estimation techniques

  3. Spillways Scheduling for Flood Control of Three Gorges Reservoir Using Mixed Integer Linear Programming Model

    Directory of Open Access Journals (Sweden)

    Maoyuan Feng

    2014-01-01

    Full Text Available This study proposes a mixed integer linear programming (MILP model to optimize the spillways scheduling for reservoir flood control. Unlike the conventional reservoir operation model, the proposed MILP model specifies the spillways status (including the number of spillways to be open and the degree of the spillway opened instead of reservoir release, since the release is actually controlled by using the spillway. The piecewise linear approximation is used to formulate the relationship between the reservoir storage and water release for a spillway, which should be open/closed with a status depicted by a binary variable. The control order and symmetry rules of spillways are described and incorporated into the constraints for meeting the practical demand. Thus, a MILP model is set up to minimize the maximum reservoir storage. The General Algebraic Modeling System (GAMS and IBM ILOG CPLEX Optimization Studio (CPLEX software are used to find the optimal solution for the proposed MILP model. The China’s Three Gorges Reservoir, whose spillways are of five types with the total number of 80, is selected as the case study. It is shown that the proposed model decreases the flood risk compared with the conventional operation and makes the operation more practical by specifying the spillways status directly.

  4. ALPS: A Linear Program Solver

    Science.gov (United States)

    Ferencz, Donald C.; Viterna, Larry A.

    1991-01-01

    ALPS is a computer program which can be used to solve general linear program (optimization) problems. ALPS was designed for those who have minimal linear programming (LP) knowledge and features a menu-driven scheme to guide the user through the process of creating and solving LP formulations. Once created, the problems can be edited and stored in standard DOS ASCII files to provide portability to various word processors or even other linear programming packages. Unlike many math-oriented LP solvers, ALPS contains an LP parser that reads through the LP formulation and reports several types of errors to the user. ALPS provides a large amount of solution data which is often useful in problem solving. In addition to pure linear programs, ALPS can solve for integer, mixed integer, and binary type problems. Pure linear programs are solved with the revised simplex method. Integer or mixed integer programs are solved initially with the revised simplex, and the completed using the branch-and-bound technique. Binary programs are solved with the method of implicit enumeration. This manual describes how to use ALPS to create, edit, and solve linear programming problems. Instructions for installing ALPS on a PC compatible computer are included in the appendices along with a general introduction to linear programming. A programmers guide is also included for assistance in modifying and maintaining the program.

  5. The Capability Portfolio Analysis Tool (CPAT): A Mixed Integer Linear Programming Formulation for Fleet Modernization Analysis (Version 2.0.2).

    Energy Technology Data Exchange (ETDEWEB)

    Waddell, Lucas [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Muldoon, Frank [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Henry, Stephen Michael [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Hoffman, Matthew John [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Zwerneman, April Marie [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Backlund, Peter [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Melander, Darryl J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Lawton, Craig R. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Rice, Roy Eugene [Teledyne Brown Engineering, Huntsville, AL (United States)

    2017-09-01

    In order to effectively plan the management and modernization of their large and diverse fleets of vehicles, Program Executive Office Ground Combat Systems (PEO GCS) and Program Executive Office Combat Support and Combat Service Support (PEO CS&CSS) commis- sioned the development of a large-scale portfolio planning optimization tool. This software, the Capability Portfolio Analysis Tool (CPAT), creates a detailed schedule that optimally prioritizes the modernization or replacement of vehicles within the fleet - respecting numerous business rules associated with fleet structure, budgets, industrial base, research and testing, etc., while maximizing overall fleet performance through time. This paper contains a thor- ough documentation of the terminology, parameters, variables, and constraints that comprise the fleet management mixed integer linear programming (MILP) mathematical formulation. This paper, which is an update to the original CPAT formulation document published in 2015 (SAND2015-3487), covers the formulation of important new CPAT features.

  6. Modelling the multilevel structure and mixed effects of the factors influencing the energy consumption of electric vehicles

    International Nuclear Information System (INIS)

    Liu, Kai; Wang, Jiangbo; Yamamoto, Toshiyuki; Morikawa, Takayuki

    2016-01-01

    Highlights: • The impacts of driving heterogeneity on EVs’ energy efficiency are examined. • Several multilevel mixed-effects regression models are proposed and compared. • The most reasonable nested structure is extracted from the long term GPS data. • Proposed model improves the energy estimation accuracy by 7.5%. - Abstract: To improve the accuracy of estimation of the energy consumption of electric vehicles (EVs) and to enable the alleviation of range anxiety through the introduction of EV charging stations at suitable locations for the near future, multilevel mixed-effects linear regression models were used in this study to estimate the actual energy efficiency of EVs. The impacts of the heterogeneity in driving behaviour among various road environments and traffic conditions on EV energy efficiency were extracted from long-term daily trip-based energy consumption data, which were collected over 12 months from 68 in-use EVs in Aichi Prefecture in Japan. Considering the variations in energy efficiency associated with different types of EV ownership, different external environments, and different driving habits, a two-level random intercept model, three two-level mixed-effects models, and two three-level mixed-effects models were developed and compared. The most reasonable nesting structure was determined by comparing the models, which were designed with different nesting structures and different random variance component specifications, thereby revealing the potential correlations and non-constant variability of the energy consumption per kilometre (ECPK) and improving the estimation accuracy by 7.5%.

  7. Tutorial on Biostatistics: Linear Regression Analysis of Continuous Correlated Eye Data.

    Science.gov (United States)

    Ying, Gui-Shuang; Maguire, Maureen G; Glynn, Robert; Rosner, Bernard

    2017-04-01

    To describe and demonstrate appropriate linear regression methods for analyzing correlated continuous eye data. We describe several approaches to regression analysis involving both eyes, including mixed effects and marginal models under various covariance structures to account for inter-eye correlation. We demonstrate, with SAS statistical software, applications in a study comparing baseline refractive error between one eye with choroidal neovascularization (CNV) and the unaffected fellow eye, and in a study determining factors associated with visual field in the elderly. When refractive error from both eyes were analyzed with standard linear regression without accounting for inter-eye correlation (adjusting for demographic and ocular covariates), the difference between eyes with CNV and fellow eyes was 0.15 diopters (D; 95% confidence interval, CI -0.03 to 0.32D, p = 0.10). Using a mixed effects model or a marginal model, the estimated difference was the same but with narrower 95% CI (0.01 to 0.28D, p = 0.03). Standard regression for visual field data from both eyes provided biased estimates of standard error (generally underestimated) and smaller p-values, while analysis of the worse eye provided larger p-values than mixed effects models and marginal models. In research involving both eyes, ignoring inter-eye correlation can lead to invalid inferences. Analysis using only right or left eyes is valid, but decreases power. Worse-eye analysis can provide less power and biased estimates of effect. Mixed effects or marginal models using the eye as the unit of analysis should be used to appropriately account for inter-eye correlation and maximize power and precision.

  8. Guidance for the utility of linear models in meta-analysis of genetic association studies of binary phenotypes.

    Science.gov (United States)

    Cook, James P; Mahajan, Anubha; Morris, Andrew P

    2017-02-01

    Linear mixed models are increasingly used for the analysis of genome-wide association studies (GWAS) of binary phenotypes because they can efficiently and robustly account for population stratification and relatedness through inclusion of random effects for a genetic relationship matrix. However, the utility of linear (mixed) models in the context of meta-analysis of GWAS of binary phenotypes has not been previously explored. In this investigation, we present simulations to compare the performance of linear and logistic regression models under alternative weighting schemes in a fixed-effects meta-analysis framework, considering designs that incorporate variable case-control imbalance, confounding factors and population stratification. Our results demonstrate that linear models can be used for meta-analysis of GWAS of binary phenotypes, without loss of power, even in the presence of extreme case-control imbalance, provided that one of the following schemes is used: (i) effective sample size weighting of Z-scores or (ii) inverse-variance weighting of allelic effect sizes after conversion onto the log-odds scale. Our conclusions thus provide essential recommendations for the development of robust protocols for meta-analysis of binary phenotypes with linear models.

  9. Effect of mixing method on the mixing degree during the preparation of triturations.

    Science.gov (United States)

    Nakamura, Hitoshi; Yanagihara, Yoshitsugu; Sekiguchi, Hiroko; Komada, Fusao; Kawabata, Haruno; Ohtani, Michiteru; Saitoh, Yukiya; Kariya, Satoru; Suzuki, Hiroshi; Uchino, Katsuyoshi; Iga, Tatsuji

    2004-03-01

    By using lactose colored with erythrocin, we investigated the effects of mixing methods on mixing degree during the preparation of trituration with a mortar and pestle. The extent of powder dilution was set to 4 to 64 fold in the experiments. We compared the results obtained by using two methods: (1) one-step mixing of powders after addition of diluents and (2) gradual mixing of powders after addition of diluents. As diluents, we used crystallized lactose and powdered lactose for the preparation of trituration. In the preparation of 64-fold trituration, an excellent degree of mixing was obtained, with CV values of less than 6.08%, for both preparation methods and for the two kinds of diluents. The mixing of two kinds of powders whose distributions of particle sizes were similar resulted in much better degree of mixing, with CV values of less than 3.0%. However, the concentration of principal agents in 64-fold trituration was reduced by 20% due to the adsorption of dye to the apparatus. Under conditions in which a much higher dilution rate and/or much better degree of dilution was required, it must be necessary to dilute powders with considering their physicality and to determine the concentrations of principal agents after the mixing.

  10. Functional linear models for association analysis of quantitative traits.

    Science.gov (United States)

    Fan, Ruzong; Wang, Yifan; Mills, James L; Wilson, Alexander F; Bailey-Wilson, Joan E; Xiong, Momiao

    2013-11-01

    Functional linear models are developed in this paper for testing associations between quantitative traits and genetic variants, which can be rare variants or common variants or the combination of the two. By treating multiple genetic variants of an individual in a human population as a realization of a stochastic process, the genome of an individual in a chromosome region is a continuum of sequence data rather than discrete observations. The genome of an individual is viewed as a stochastic function that contains both linkage and linkage disequilibrium (LD) information of the genetic markers. By using techniques of functional data analysis, both fixed and mixed effect functional linear models are built to test the association between quantitative traits and genetic variants adjusting for covariates. After extensive simulation analysis, it is shown that the F-distributed tests of the proposed fixed effect functional linear models have higher power than that of sequence kernel association test (SKAT) and its optimal unified test (SKAT-O) for three scenarios in most cases: (1) the causal variants are all rare, (2) the causal variants are both rare and common, and (3) the causal variants are common. The superior performance of the fixed effect functional linear models is most likely due to its optimal utilization of both genetic linkage and LD information of multiple genetic variants in a genome and similarity among different individuals, while SKAT and SKAT-O only model the similarities and pairwise LD but do not model linkage and higher order LD information sufficiently. In addition, the proposed fixed effect models generate accurate type I error rates in simulation studies. We also show that the functional kernel score tests of the proposed mixed effect functional linear models are preferable in candidate gene analysis and small sample problems. The methods are applied to analyze three biochemical traits in data from the Trinity Students Study. © 2013 WILEY

  11. Efficient and robust estimation for longitudinal mixed models for binary data

    DEFF Research Database (Denmark)

    Holst, René

    2009-01-01

    This paper proposes a longitudinal mixed model for binary data. The model extends the classical Poisson trick, in which a binomial regression is fitted by switching to a Poisson framework. A recent estimating equations method for generalized linear longitudinal mixed models, called GEEP, is used...... as a vehicle for fitting the conditional Poisson regressions, given a latent process of serial correlated Tweedie variables. The regression parameters are estimated using a quasi-score method, whereas the dispersion and correlation parameters are estimated by use of bias-corrected Pearson-type estimating...... equations, using second moments only. Random effects are predicted by BLUPs. The method provides a computationally efficient and robust approach to the estimation of longitudinal clustered binary data and accommodates linear and non-linear models. A simulation study is used for validation and finally...

  12. Effects of socioeconomic position and social mobility on linear growth from early childhood until adolescence

    Directory of Open Access Journals (Sweden)

    Ana Paula Muraro

    Full Text Available ABSTRACT: Objective: To assess the effect of socioeconomic position (SEP in childhood and social mobility on linear growth through adolescence in a population-based cohort. Methods: Children born in Cuiabá-MT, central-western Brazil, were evaluated during 1994 - 1999. They were first assessed during 1999 - 2000 (0 - 5 years and again during 2009 - 2011 (10 - 17 years, and their height-for-age was evaluated during these two periods.Awealth index was used to classify the SEP of each child’s family as low, medium, or high. Social mobility was categorized as upward mobility or no upward mobility. Linear mixed models were used. Results: We evaluated 1,716 children (71.4% of baseline after 10 years, and 60.6% of the families showed upward mobility, with a higher percentage among the lowest economic classes. A higher height-for-age was also observed among those from families with a high SEP both in childhood (low SEP= -0.35 z-score; high SEP= 0.15 z-score, p < 0.01 and adolescence (low SEP= -0.01 z-score; high SEP= 0.45 z-score, p < 0.01, whereas upward mobility did not affect their linear growth. Conclusion: Expressive social mobility was observed, but SEP in childhood and social mobility did not greatly influence linear growth through childhood in this central-western Brazilian cohort.

  13. The effect of skill mix in non-nursing assistants on work engagements among home visiting nurses in Japan.

    Science.gov (United States)

    Naruse, Takashi; Taguchi, Atsuko; Kuwahara, Yuki; Nagata, Satoko; Sakai, Mahiro; Watai, Izumi; Murashima, Sachiyo

    2015-05-01

    This study evaluated the effect of a skill-mix programme intervention on work engagement in home visiting nurses. A skill-mix programme in which home visiting nurses are assisted by non-nursing workers is assumed to foster home visiting nurses' work engagement. Pre- and post-intervention evaluations of work engagement were conducted using self-administered questionnaires. A skill-mix programme was introduced in the intervention group of home visiting nurses. After 6 months, their pre- and post-intervention work engagement ratings were compared with those of a control group. Baseline questionnaires were returned by 174 home visiting nurses (44 in the intervention group, 130 in the control group). Post-intervention questionnaires were returned by 38 and 97 home visiting nurses from each group. The intervention group's average work engagement scores were 2.2 at baseline and 2.3 at post-intervention; the control group's were 3.3 and 2.6. Generalised linear regression showed significant between-group differences in score changes. The skill-mix programme might foster home visiting nurses' work engagement by improving the quality of care for each client. Future research is needed to explain the exact mechanisms that underlie its effectiveness. In order to improve the efficiency of services provided by home visiting nurses and foster their work engagement, skill-mix programmes might be beneficial. © 2014 John Wiley & Sons Ltd.

  14. Jet mixing long horizontal storage tanks

    International Nuclear Information System (INIS)

    Perona, J.J.; Hylton, T.D.; Youngblood, E.L.; Cummins, R.L.

    1994-12-01

    Large storage tanks may require mixing to achieve homogeneity of contents for several reasons: prior to sampling for mass balance purposes, for blending in reagents, for suspending settled solids for removal, or for use as a feed tank to a process. At ORNL, mixed waste evaporator concentrates are stored in 50,000-gal tanks, about 12 ft in diameter and 60 ft long. This tank configuration has the advantage of permitting transport by truck and therefore fabrication in the shop rather than in the field. Jet mixing experiments were carried out on two model tanks: a 230-gal (1/6-linear-scale) Plexiglas tank and a 25,000-gal tank (about 2/3 linear scale). Mixing times were measured using sodium chloride tracer and several conductivity probes distributed through the tanks. Several jet sizes and configurations were tested. One-directional and two-directional jets were tested in both tanks. Mixing times for each tank were correlated with the jet Reynolds number. Mixing times were correlated for the two tank sizes using the recirculation time for the developed jet. When the recirculation times were calculated using the distance from the nozzle to the end of the tank as the length of the developed jet, the correlation was only marginally successful. Data for the two tank sizes were correlated empirically using a modified effective jet length expressed as a function of the Reynolds number raised to the 1/3 power. Mixing experiments were simulated using the TEMTEST computer program. The simulations predicted trends correctly and were within the scatter of the experimental data with the lower jet Reynolds numbers. Agreement was not as good at high Reynolds numbers except for single nozzles in the 25,000-gal tank, where agreement was excellent over the entire range

  15. Diode array pumped, non-linear mirror Q-switched and mode-locked ...

    Indian Academy of Sciences (India)

    A non-linear mirror consisting of a lithium triborate crystal and a dichroic ... effects such as all-optical switching [7,8], nearly degenerate four-wave mixing [9,10], .... is driven by a radio frequency signal of 27.2MHz with a modulation available in.

  16. Effect of Different Concrete Grade on Radiation Linear Attenuation Coefficient (μ)

    International Nuclear Information System (INIS)

    Noor Azreen Masenwat; Mohammad Shahrizan Samsu; Mohamad Pauzi Ismail; Suhairy Sani; Ismail Mustapha; Nasharuddin Isa; Mohamad Haniza Mahmud

    2014-01-01

    In calculating the quantity of absorption of radiation and its relationship with the thickness of a material, linear attenuation coefficient (μ) of the material is one of the parameters to be taken into account. For normal concrete, the (μ) varies depending on the type of radiation used, 0.105 cm -1 for Co-60 and 0.123 cm -1 for Cs-137. Value (μ) is used in the calculation of the radiation absorption for concrete material does not take into account factors such concrete grades. In this research, concrete with different grades (Grade 15, Grade 20, Grade 25, Grade 30, Grade 35, Grade 40) are designed and manufactured with reference to the mixing method described in British Standard. Then, the linear attenuation (μ) for each grade are measured using the radiation from the source Co-60 and Cs-137 sources. This paper describes and discusses the impact of differences in concrete grade of linear attenuation (μ) for Co-60 source/ source Cs-137 and its relationship with the compressive strength. (author)

  17. ρ - ω Mixing Effects in Relativistic Heavy-Ion Collisions

    International Nuclear Information System (INIS)

    Broniowski, W.; Florkowski, W.

    1999-01-01

    Full text: We have shown that even moderate excess of neutrons over protons in nuclear matter, such as in 208 Pb, can lead to large ρ - ω mixing at densities of the order of twice the nuclear saturation density and higher. The typical mixing angle is of the order of 10 o . The mixing may result in noticeable shifts of the positions and widths of resonances. We also analyze temperature effects and find that temperatures up to 50 MeV have practically no effect on the mixing. The results have relevance for the explanation of dilepton production in relativistic heavy-ion collisions. (author)

  18. Suppression of chaos at slow variables by rapidly mixing fast dynamics through linear energy-preserving coupling

    Science.gov (United States)

    Abramov, R. V.

    2011-12-01

    Chaotic multiscale dynamical systems are common in many areas of science, one of the examples being the interaction of the low-frequency dynamics in the atmosphere with the fast turbulent weather dynamics. One of the key questions about chaotic multiscale systems is how the fast dynamics affects chaos at the slow variables, and, therefore, impacts uncertainty and predictability of the slow dynamics. Here we demonstrate that the linear slow-fast coupling with the total energy conservation property promotes the suppression of chaos at the slow variables through the rapid mixing at the fast variables, both theoretically and through numerical simulations. A suitable mathematical framework is developed, connecting the slow dynamics on the tangent subspaces to the infinite-time linear response of the mean state to a constant external forcing at the fast variables. Additionally, it is shown that the uncoupled dynamics for the slow variables may remain chaotic while the complete multiscale system loses chaos and becomes completely predictable at the slow variables through increasing chaos and turbulence at the fast variables. This result contradicts the common sense intuition, where, naturally, one would think that coupling a slow weakly chaotic system with another much faster and much stronger chaotic system would result in general increase of chaos at the slow variables.

  19. Reynolds number effects on mixing due to topological chaos.

    Science.gov (United States)

    Smith, Spencer A; Warrier, Sangeeta

    2016-03-01

    Topological chaos has emerged as a powerful tool to investigate fluid mixing. While this theory can guarantee a lower bound on the stretching rate of certain material lines, it does not indicate what fraction of the fluid actually participates in this minimally mandated mixing. Indeed, the area in which effective mixing takes place depends on physical parameters such as the Reynolds number. To help clarify this dependency, we numerically simulate the effects of a batch stirring device on a 2D incompressible Newtonian fluid in the laminar regime. In particular, we calculate the finite time Lyapunov exponent (FTLE) field for three different stirring protocols, one topologically complex (pseudo-Anosov) and two simple (finite-order), over a range of viscosities. After extracting appropriate measures indicative of both the amount of mixing and the area of effective mixing from the FTLE field, we see a clearly defined Reynolds number range in which the relative efficacy of the pseudo-Anosov protocol over the finite-order protocols justifies the application of topological chaos. More unexpectedly, we see that while the measures of effective mixing area increase with increasing Reynolds number for the finite-order protocols, they actually exhibit non-monotonic behavior for the pseudo-Anosov protocol.

  20. Extending existing structural identifiability analysis methods to mixed-effects models.

    Science.gov (United States)

    Janzén, David L I; Jirstrand, Mats; Chappell, Michael J; Evans, Neil D

    2018-01-01

    The concept of structural identifiability for state-space models is expanded to cover mixed-effects state-space models. Two methods applicable for the analytical study of the structural identifiability of mixed-effects models are presented. The two methods are based on previously established techniques for non-mixed-effects models; namely the Taylor series expansion and the input-output form approach. By generating an exhaustive summary, and by assuming an infinite number of subjects, functions of random variables can be derived which in turn determine the distribution of the system's observation function(s). By considering the uniqueness of the analytical statistical moments of the derived functions of the random variables, the structural identifiability of the corresponding mixed-effects model can be determined. The two methods are applied to a set of examples of mixed-effects models to illustrate how they work in practice. Copyright © 2017 Elsevier Inc. All rights reserved.

  1. No Mikheyev-Smirnov-Wolfenstein Effect in Maximal Mixing

    OpenAIRE

    Harrison, P. F.; Perkins, D. H.; Scott, W. G.

    1996-01-01

    We investigate the possible influence of the MSW effect on the expectations for the solar neutrino experiments in the maximal mixing scenario suggested by the atmospheric neutrino data. A direct numerical calculation of matter induced effects in the Sun shows that the naive vacuum predictions are left completely undisturbed in the particular case of maximal mixing, so that the MSW effect turns out to be unobservable. We give a qualitative explanation of this result.

  2. lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals.

    Science.gov (United States)

    Ziyatdinov, Andrey; Vázquez-Santiago, Miquel; Brunel, Helena; Martinez-Perez, Angel; Aschard, Hugues; Soria, Jose Manuel

    2018-02-27

    Quantitative trait locus (QTL) mapping in genetic data often involves analysis of correlated observations, which need to be accounted for to avoid false association signals. This is commonly performed by modeling such correlations as random effects in linear mixed models (LMMs). The R package lme4 is a well-established tool that implements major LMM features using sparse matrix methods; however, it is not fully adapted for QTL mapping association and linkage studies. In particular, two LMM features are lacking in the base version of lme4: the definition of random effects by custom covariance matrices; and parameter constraints, which are essential in advanced QTL models. Apart from applications in linkage studies of related individuals, such functionalities are of high interest for association studies in situations where multiple covariance matrices need to be modeled, a scenario not covered by many genome-wide association study (GWAS) software. To address the aforementioned limitations, we developed a new R package lme4qtl as an extension of lme4. First, lme4qtl contributes new models for genetic studies within a single tool integrated with lme4 and its companion packages. Second, lme4qtl offers a flexible framework for scenarios with multiple levels of relatedness and becomes efficient when covariance matrices are sparse. We showed the value of our package using real family-based data in the Genetic Analysis of Idiopathic Thrombophilia 2 (GAIT2) project. Our software lme4qtl enables QTL mapping models with a versatile structure of random effects and efficient computation for sparse covariances. lme4qtl is available at https://github.com/variani/lme4qtl .

  3. Uniqueness theorems in linear elasticity

    CERN Document Server

    Knops, Robin John

    1971-01-01

    The classical result for uniqueness in elasticity theory is due to Kirchhoff. It states that the standard mixed boundary value problem for a homogeneous isotropic linear elastic material in equilibrium and occupying a bounded three-dimensional region of space possesses at most one solution in the classical sense, provided the Lame and shear moduli, A and J1 respectively, obey the inequalities (3 A + 2 J1) > 0 and J1>O. In linear elastodynamics the analogous result, due to Neumann, is that the initial-mixed boundary value problem possesses at most one solution provided the elastic moduli satisfy the same set of inequalities as in Kirchhoffs theorem. Most standard textbooks on the linear theory of elasticity mention only these two classical criteria for uniqueness and neglect altogether the abundant literature which has appeared since the original publications of Kirchhoff. To remedy this deficiency it seems appropriate to attempt a coherent description ofthe various contributions made to the study of uniquenes...

  4. Effect of mix parameters on longevity of bituminous mixtures

    Science.gov (United States)

    Reichle, Clayton Matthew

    This study was performed to evaluate the effects of varying aggregate sources, aggregate gradations on the stripping and rutting potential of bituminous based plant mixes specified by the Missouri Department of Transportation. The different aggregate combinations included two different aggregate sources (Potosi Dolomite and Jefferson City Dolomite) including two variations for the Jefferson City Dolomite mix to simulate a marginally in-specification mix and an out-of-specification but in-field tolerance mix. The "field" mix simulated the marginal mix where field tolerance of high dust and low binder content were maximized. All three mixes were evaluated for stripping susceptibility using the Tensile Strength Ratio (TSR) test and the Hamburg Wheel Tracking Device (HWTD). The mix characteristics (unit weight, effective binder content, and air voids) were used for a Level 3 analysis in the Mechanistic-Empirical Pavement Design Guide (MEPDG) to determine long term pavement distress conditions such as fatigue cracking, rutting, and IRI (smoothness). The Potosi mix exhibited the best resistance to rutting and stripping during both the TSR testing as well as the Hamburg testing. The Jefferson City In-Spec and Out-of-Spec mixes showed less resistance to rutting and stripping in order, respectively. This was expected for the Jefferson City mixes where the aggregate was of lower quality (higher Los Angeles Abrasion, Micro Deval loss, absorption, and deleterious materials). Also, in the case of the Jefferson City Out-of-Spec mix, the binder content was lower. Upon evaluating the mixes using the MEPDG software, it was shown that mix characteristics such as air voids, VMA, and VFA influenced the fatigue cracking, rutting, and IRI predictions to a minor degree.

  5. The salinity effect in a mixed layer ocean model

    Science.gov (United States)

    Miller, J. R.

    1976-01-01

    A model of the thermally mixed layer in the upper ocean as developed by Kraus and Turner and extended by Denman is further extended to investigate the effects of salinity. In the tropical and subtropical Atlantic Ocean rapid increases in salinity occur at the bottom of a uniformly mixed surface layer. The most significant effects produced by the inclusion of salinity are the reduction of the deepening rate and the corresponding change in the heating characteristics of the mixed layer. If the net surface heating is positive, but small, salinity effects must be included to determine whether the mixed layer temperature will increase or decrease. Precipitation over tropical oceans leads to the development of a shallow stable layer accompanied by a decrease in the temperature and salinity at the sea surface.

  6. MetabR: an R script for linear model analysis of quantitative metabolomic data

    Directory of Open Access Journals (Sweden)

    Ernest Ben

    2012-10-01

    Full Text Available Abstract Background Metabolomics is an emerging high-throughput approach to systems biology, but data analysis tools are lacking compared to other systems level disciplines such as transcriptomics and proteomics. Metabolomic data analysis requires a normalization step to remove systematic effects of confounding variables on metabolite measurements. Current tools may not correctly normalize every metabolite when the relationships between each metabolite quantity and fixed-effect confounding variables are different, or for the effects of random-effect confounding variables. Linear mixed models, an established methodology in the microarray literature, offer a standardized and flexible approach for removing the effects of fixed- and random-effect confounding variables from metabolomic data. Findings Here we present a simple menu-driven program, “MetabR”, designed to aid researchers with no programming background in statistical analysis of metabolomic data. Written in the open-source statistical programming language R, MetabR implements linear mixed models to normalize metabolomic data and analysis of variance (ANOVA to test treatment differences. MetabR exports normalized data, checks statistical model assumptions, identifies differentially abundant metabolites, and produces output files to help with data interpretation. Example data are provided to illustrate normalization for common confounding variables and to demonstrate the utility of the MetabR program. Conclusions We developed MetabR as a simple and user-friendly tool for implementing linear mixed model-based normalization and statistical analysis of targeted metabolomic data, which helps to fill a lack of available data analysis tools in this field. The program, user guide, example data, and any future news or updates related to the program may be found at http://metabr.r-forge.r-project.org/.

  7. Optimising the selection of food items for FFQs using Mixed Integer Linear Programming.

    Science.gov (United States)

    Gerdessen, Johanna C; Souverein, Olga W; van 't Veer, Pieter; de Vries, Jeanne Hm

    2015-01-01

    To support the selection of food items for FFQs in such a way that the amount of information on all relevant nutrients is maximised while the food list is as short as possible. Selection of the most informative food items to be included in FFQs was modelled as a Mixed Integer Linear Programming (MILP) model. The methodology was demonstrated for an FFQ with interest in energy, total protein, total fat, saturated fat, monounsaturated fat, polyunsaturated fat, total carbohydrates, mono- and disaccharides, dietary fibre and potassium. The food lists generated by the MILP model have good performance in terms of length, coverage and R 2 (explained variance) of all nutrients. MILP-generated food lists were 32-40 % shorter than a benchmark food list, whereas their quality in terms of R 2 was similar to that of the benchmark. The results suggest that the MILP model makes the selection process faster, more standardised and transparent, and is especially helpful in coping with multiple nutrients. The complexity of the method does not increase with increasing number of nutrients. The generated food lists appear either shorter or provide more information than a food list generated without the MILP model.

  8. Menu-Driven Solver Of Linear-Programming Problems

    Science.gov (United States)

    Viterna, L. A.; Ferencz, D.

    1992-01-01

    Program assists inexperienced user in formulating linear-programming problems. A Linear Program Solver (ALPS) computer program is full-featured LP analysis program. Solves plain linear-programming problems as well as more-complicated mixed-integer and pure-integer programs. Also contains efficient technique for solution of purely binary linear-programming problems. Written entirely in IBM's APL2/PC software, Version 1.01. Packed program contains licensed material, property of IBM (copyright 1988, all rights reserved).

  9. Effect of mixing on properties of SCC

    DEFF Research Database (Denmark)

    Geiker, Mette Rica; Ekstrand, John Peter; Hansen, Rune

    2007-01-01

    agglomerates will remain. The paper focuses on the effect of mixing schedule on self-compacting concrete properties. Workability and micro structure of a typical Danish self-compacting concrete mixed at varying intensity and with addition of superplasticizer in either one or two batches are described....... The observations indicate that the most homogeneous concrete does not necessarily exhibit the lowest rheological properties....

  10. The coefficient of determination R2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and expanded.

    Science.gov (United States)

    Nakagawa, Shinichi; Johnson, Paul C D; Schielzeth, Holger

    2017-09-01

    The coefficient of determination R 2 quantifies the proportion of variance explained by a statistical model and is an important summary statistic of biological interest. However, estimating R 2 for generalized linear mixed models (GLMMs) remains challenging. We have previously introduced a version of R 2 that we called [Formula: see text] for Poisson and binomial GLMMs, but not for other distributional families. Similarly, we earlier discussed how to estimate intra-class correlation coefficients (ICCs) using Poisson and binomial GLMMs. In this paper, we generalize our methods to all other non-Gaussian distributions, in particular to negative binomial and gamma distributions that are commonly used for modelling biological data. While expanding our approach, we highlight two useful concepts for biologists, Jensen's inequality and the delta method, both of which help us in understanding the properties of GLMMs. Jensen's inequality has important implications for biologically meaningful interpretation of GLMMs, whereas the delta method allows a general derivation of variance associated with non-Gaussian distributions. We also discuss some special considerations for binomial GLMMs with binary or proportion data. We illustrate the implementation of our extension by worked examples from the field of ecology and evolution in the R environment. However, our method can be used across disciplines and regardless of statistical environments. © 2017 The Author(s).

  11. Linearization Method and Linear Complexity

    Science.gov (United States)

    Tanaka, Hidema

    We focus on the relationship between the linearization method and linear complexity and show that the linearization method is another effective technique for calculating linear complexity. We analyze its effectiveness by comparing with the logic circuit method. We compare the relevant conditions and necessary computational cost with those of the Berlekamp-Massey algorithm and the Games-Chan algorithm. The significant property of a linearization method is that it needs no output sequence from a pseudo-random number generator (PRNG) because it calculates linear complexity using the algebraic expression of its algorithm. When a PRNG has n [bit] stages (registers or internal states), the necessary computational cost is smaller than O(2n). On the other hand, the Berlekamp-Massey algorithm needs O(N2) where N(≅2n) denotes period. Since existing methods calculate using the output sequence, an initial value of PRNG influences a resultant value of linear complexity. Therefore, a linear complexity is generally given as an estimate value. On the other hand, a linearization method calculates from an algorithm of PRNG, it can determine the lower bound of linear complexity.

  12. Mixed H2/Hinfinity output-feedback control of second-order neutral systems with time-varying state and input delays.

    Science.gov (United States)

    Karimi, Hamid Reza; Gao, Huijun

    2008-07-01

    A mixed H2/Hinfinity output-feedback control design methodology is presented in this paper for second-order neutral linear systems with time-varying state and input delays. Delay-dependent sufficient conditions for the design of a desired control are given in terms of linear matrix inequalities (LMIs). A controller, which guarantees asymptotic stability and a mixed H2/Hinfinity performance for the closed-loop system of the second-order neutral linear system, is then developed directly instead of coupling the model to a first-order neutral system. A Lyapunov-Krasovskii method underlies the LMI-based mixed H2/Hinfinity output-feedback control design using some free weighting matrices. The simulation results illustrate the effectiveness of the proposed methodology.

  13. Linear Text vs. Non-Linear Hypertext in Handheld Computers: Effects on Declarative and Structural Knowledge, and Learner Motivation

    Science.gov (United States)

    Son, Chanhee; Park, Sanghoon; Kim, Minjeong

    2011-01-01

    This study compared linear text-based and non-linear hypertext-based instruction in a handheld computer regarding effects on two different levels of knowledge (declarative and structural knowledge) and learner motivation. Forty four participants were randomly assigned to one of three experimental conditions: linear text, hierarchical hypertext,…

  14. Three novel approaches to structural identifiability analysis in mixed-effects models.

    Science.gov (United States)

    Janzén, David L I; Jirstrand, Mats; Chappell, Michael J; Evans, Neil D

    2016-05-06

    Structural identifiability is a concept that considers whether the structure of a model together with a set of input-output relations uniquely determines the model parameters. In the mathematical modelling of biological systems, structural identifiability is an important concept since biological interpretations are typically made from the parameter estimates. For a system defined by ordinary differential equations, several methods have been developed to analyse whether the model is structurally identifiable or otherwise. Another well-used modelling framework, which is particularly useful when the experimental data are sparsely sampled and the population variance is of interest, is mixed-effects modelling. However, established identifiability analysis techniques for ordinary differential equations are not directly applicable to such models. In this paper, we present and apply three different methods that can be used to study structural identifiability in mixed-effects models. The first method, called the repeated measurement approach, is based on applying a set of previously established statistical theorems. The second method, called the augmented system approach, is based on augmenting the mixed-effects model to an extended state-space form. The third method, called the Laplace transform mixed-effects extension, is based on considering the moment invariants of the systems transfer function as functions of random variables. To illustrate, compare and contrast the application of the three methods, they are applied to a set of mixed-effects models. Three structural identifiability analysis methods applicable to mixed-effects models have been presented in this paper. As method development of structural identifiability techniques for mixed-effects models has been given very little attention, despite mixed-effects models being widely used, the methods presented in this paper provides a way of handling structural identifiability in mixed-effects models previously not

  15. Initial condition effects on large scale structure in numerical simulations of plane mixing layers

    Science.gov (United States)

    McMullan, W. A.; Garrett, S. J.

    2016-01-01

    In this paper, Large Eddy Simulations are performed on the spatially developing plane turbulent mixing layer. The simulated mixing layers originate from initially laminar conditions. The focus of this research is on the effect of the nature of the imposed fluctuations on the large-scale spanwise and streamwise structures in the flow. Two simulations are performed; one with low-level three-dimensional inflow fluctuations obtained from pseudo-random numbers, the other with physically correlated fluctuations of the same magnitude obtained from an inflow generation technique. Where white-noise fluctuations provide the inflow disturbances, no spatially stationary streamwise vortex structure is observed, and the large-scale spanwise turbulent vortical structures grow continuously and linearly. These structures are observed to have a three-dimensional internal geometry with branches and dislocations. Where physically correlated provide the inflow disturbances a "streaky" streamwise structure that is spatially stationary is observed, with the large-scale turbulent vortical structures growing with the square-root of time. These large-scale structures are quasi-two-dimensional, on top of which the secondary structure rides. The simulation results are discussed in the context of the varying interpretations of mixing layer growth that have been postulated. Recommendations are made concerning the data required from experiments in order to produce accurate numerical simulation recreations of real flows.

  16. Non-linear mixing in coupled photonic crystal nanobeam cavities due to cross-coupling opto-mechanical mechanisms

    Energy Technology Data Exchange (ETDEWEB)

    Ramos, Daniel, E-mail: daniel.ramos@csic.es; Frank, Ian W.; Deotare, Parag B.; Bulu, Irfan; Lončar, Marko [School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138 (United States)

    2014-11-03

    We investigate the coupling between mechanical and optical modes supported by coupled, freestanding, photonic crystal nanobeam cavities. We show that localized cavity modes for a given gap between the nanobeams provide weak optomechanical coupling with out-of-plane mechanical modes. However, we show that the coupling can be significantly increased, more than an order of magnitude for the symmetric mechanical mode, due to optical resonances that arise from the interaction of the localized cavity modes with standing waves formed by the reflection from thesubstrate. Finally, amplification of motion for the symmetric mode has been observed and attributed to the strong optomechanical interaction of our hybrid system. The amplitude of these self-sustained oscillations is large enough to put the system into a non-linear oscillation regime where a mixing between the mechanical modes is experimentally observed and theoretically explained.

  17. A Mixed Integer Linear Programming Model for the Design of Remanufacturing Closed–loop Supply Chain Network

    Directory of Open Access Journals (Sweden)

    Mbarek Elbounjimi

    2015-11-01

    Full Text Available Closed-loop supply chain network design is a critical issue due to its impact on both economic and environmental performances of the supply chain. In this paper, we address the problem of designing a multi-echelon, multi-product and capacitated closed-loop supply chain network. First, a mixed-integer linear programming formulation is developed to maximize the total profit. The main contribution of the proposed model is addressing two economic viability issues of closed-loop supply chain. The first issue is the collection of sufficient quantity of end-of-life products are assured by retailers against an acquisition price. The second issue is exploiting the benefits of colocation of forward facilities and reverse facilities. The presented model is solved by LINGO for some test problems. Computational results and sensitivity analysis are conducted to show the performance of the proposed model.

  18. Automatic Design of Synthetic Gene Circuits through Mixed Integer Non-linear Programming

    Science.gov (United States)

    Huynh, Linh; Kececioglu, John; Köppe, Matthias; Tagkopoulos, Ilias

    2012-01-01

    Automatic design of synthetic gene circuits poses a significant challenge to synthetic biology, primarily due to the complexity of biological systems, and the lack of rigorous optimization methods that can cope with the combinatorial explosion as the number of biological parts increases. Current optimization methods for synthetic gene design rely on heuristic algorithms that are usually not deterministic, deliver sub-optimal solutions, and provide no guaranties on convergence or error bounds. Here, we introduce an optimization framework for the problem of part selection in synthetic gene circuits that is based on mixed integer non-linear programming (MINLP), which is a deterministic method that finds the globally optimal solution and guarantees convergence in finite time. Given a synthetic gene circuit, a library of characterized parts, and user-defined constraints, our method can find the optimal selection of parts that satisfy the constraints and best approximates the objective function given by the user. We evaluated the proposed method in the design of three synthetic circuits (a toggle switch, a transcriptional cascade, and a band detector), with both experimentally constructed and synthetic promoter libraries. Scalability and robustness analysis shows that the proposed framework scales well with the library size and the solution space. The work described here is a step towards a unifying, realistic framework for the automated design of biological circuits. PMID:22536398

  19. Non-linear mixed-effects modeling for photosynhetic response of Rosa hybrida L. under elevated CO2 in greenhouses - short communication

    DEFF Research Database (Denmark)

    Ozturk, I.; Ottosen, C.O.; Ritz, Christian

    2011-01-01

    conditions. Leaf gas exchanges were measured at 11 light intensities from 0 to 1,400 µmol/m2s, at 800 ppm CO2, 25°C, and 65 ± 5% relative humidity. In order to describe the data corresponding to diff erent measurement dates, the non-linear mixed-eff ects regression analysis was used. Th e model successfully...... effi ciency. Th e results suggested acclimation response, as carbon assimilation rates and stomatal conductance at each measurement date were higher for Escimo than Mercedes. Diff erences in photosynthesis rates were attributed to the adaptive capacity of the cultivars to light conditions at a specifi......Photosynthetic response to light was measured on the leaves of two cultivars of Rosa hybrida L. (Escimo and Mercedes) in the greenhouse to obtain light-response curves and their parameters. Th e aim was to use a model to simulate leaf photosynthetic carbon gain with respect to environmental...

  20. On the effect of mixing on property development of cement pastes

    DEFF Research Database (Denmark)

    Geiker, Mette Rica; Bøhm, Anja; Kjeldsen, Ane Mette

    2006-01-01

    by hand and in a high-speed mixer. Chemical shrinkage was measured to illustrate the effect of mixing on development of hydration. Chloride migration was measured on 28 days old pastes to illustrate the effect of mixing on the hydrated pastes. The present investigation of pastes of white Portland cement...... showed an effect of mixing on the development of chemical shrinkage, i.e. hydration, of pastes with superplasticizer, but without silica fume. Silica fume agglomerates were observed in thin sections of pastes with silica fume and mixed by hand; however no effect on the development of hydration...

  1. Effects of patient safety auditing in hospital care: results of a mixed-method evaluation (part 1).

    Science.gov (United States)

    Hanskamp-Sebregts, Mirelle; Zegers, Marieke; Westert, Gert P; Boeijen, Wilma; Teerenstra, Steven; van Gurp, Petra J; Wollersheim, Hub

    2018-06-15

    To evaluate the effectiveness of internal auditing in hospital care focussed on improving patient safety. A before-and-after mixed-method evaluation study was carried out in eight departments of a university medical center in the Netherlands. Internal auditing and feedback focussed on improving patient safety. The effect of internal auditing was assessed 15 months after the audit, using linear mixed models, on the patient, professional, team and departmental levels. The measurement methods were patient record review on adverse events (AEs), surveys regarding patient experiences, safety culture and team climate, analysis of administrative hospital data (standardized mortality rate, SMR) and safety walk rounds (SWRs) to observe frontline care processes on safety. The AE rate decreased from 36.1% to 31.3% and the preventable AE rate from 5.5% to 3.6%; however, the differences before and after auditing were not statistically significant. The patient-reported experience measures regarding patient safety improved slightly over time (P audit. The SWRs showed that medication safety and information security were improved (P auditing was associated with improved patient experiences and observed safety on wards. No effects were found on adverse outcomes, safety culture and team climate 15 months after the internal audit.

  2. CFD simulation on reactor flow mixing phenomena

    International Nuclear Information System (INIS)

    Kwon, T.S.; Kim, K.H.

    2016-01-01

    A pre-test calculation for multi-dimensional flow mixing in a reactor core and downcomer has been studied using a CFD code. To study the effects of Reactor Coolant Pump (RCP) and core zone on the boron mixing behaviors in a lower downcomer and core inlet, a 1/5-scale CFD model of flow mixing test facility for the APR+ reference plant was simulated. The flow paths of the 1/5-scale model were scaled down by the linear scaling method. The aspect ratio (L/D) of all flow paths was preserved to 1. To preserve a dynamic similarity, the ratio of Euler number was also preserved to 1. A single phase water flow at low pressure and temperature conditions was considered in this calculation. The calculation shows that the asymmetric effect driven by RCPs shifted the high velocity field to the failed pump's flow zone. The borated water flow zone at the core inlet was also shifted to the failed RCP side. (author)

  3. Physical and optical studies in mixed alkali borate glasses with three types of alkali ions

    International Nuclear Information System (INIS)

    Samee, M.A.; Awasthi, A.M.; Shripathi, T.; Bale, Shashidhar; Srinivasu, Ch.; Rahman, Syed

    2011-01-01

    Research highlights: → We report, for the first time, the mixed alkali effect in the (40-x)Li 2 O-xNa 2 O-10K 2 O-50B 2 O 3 glasses through optical properties, density and modulated DSC studies. → Optical band gap (E opt ) and Urbach energy (ΔE) have been evaluated. → The values of E opt and ΔE show non-linear behavior with compositional parameter showing the mixed alkali effect. → The glass stability S is observed to be less which may be important for the present glasses as promising material for non-optical applications. - Abstract: So far only a handful of publications have been concerned with the study of the mixed alkali effect in borate glasses containing three types of alkali ions. In the present work, the mixed alkali effect (MAE) has been investigated in the glass system (40-x)Li 2 O-xNa 2 O-10K 2 O-50B 2 O 3 . (0 ≤ x ≤ 40 mol%) through density and modulated DSC studies. The density and glass transition temperature of the present glasses varies non-linearly exhibiting mixed alkali effect. The glass stability is observed to be less which may be important for the present glasses as promising material for non-optical applications. We report, for the first time, the mixed alkali effect in the present glasses through optical properties. From the absorption edge studies, the values of indirect optical band gap (E opt ), direct optical band gap and Urbach energy (ΔE) have been evaluated. The values of E opt and ΔE show non-linear behavior with compositional parameter showing the mixed alkali effect. The average electronic polarizability of oxide ions α O 2- , optical basicity Λ, and Yamashita-Kurosawa's interaction parameter A have been examined to check the correlations among them and bonding character. Based on good correlation among electronic polarizability of oxide ions, optical basicity and interaction parameter, the present Li 2 O-Na 2 O-K 2 O-B 2 O 3 glasses are classified as normal ionic (basic) oxides.

  4. Isotope effects in ion-exchange equilibria in aqueous and mixed solvent systems

    International Nuclear Information System (INIS)

    Gupta, A.R.

    1979-01-01

    Isotope effects in ion-exchange equilibria in aqueous and mixed solvents are analyzed in terms of the general features of ion-exchange equilibria and of isotope effects in chemical equilibria. The special role of solvent fractionation effects in ion-exchange equilibria in mixed solvents is pointed out. The various situations arising in isotope fractionation in ion exchange in mixed solvents due to solvent fractionation effects are theoretically discussed. The experimental data on lithium isotope effects in ion-exchange equilibria in mixed solvents are shown to conform to the above situations. The limitations of ion-exchange equilibria in mixed solvents for isotope fractionation are pointed out. 3 tables

  5. Design and analysis of Q-RT-PCR assays for haematological malignancies using mixed effects models

    DEFF Research Database (Denmark)

    Bøgsted, Martin; Mandrup, Charlotte; Petersen, Anders

    2009-01-01

    research use and needs qualit control for accuracy and precision. Especially the identification of experimental variations and statistical analysis has recently created discussions. The standard analytical technique is to use the Delta-Delta-Ct method. Although this method accounts for sample specific...... developed based on a linear mixed effects model for factorial designs. The model consists of an analysis of variance where the variation of each fixed effect of interest and identified experimental and biological nuisance variations are split. Hereby it accounts for varying efficiency, inhomogeneous......The recent WHO classification of haematological malignancies includes detection of genetic abnormalities with rognostic significance. Consequently, an increasing number of specific real-time quantitative reverse transcription polymerase chain reaction (Q-RT-PCR) based assays are in clinical...

  6. Node-Splitting Generalized Linear Mixed Models for Evaluation of Inconsistency in Network Meta-Analysis.

    Science.gov (United States)

    Yu-Kang, Tu

    2016-12-01

    Network meta-analysis for multiple treatment comparisons has been a major development in evidence synthesis methodology. The validity of a network meta-analysis, however, can be threatened by inconsistency in evidence within the network. One particular issue of inconsistency is how to directly evaluate the inconsistency between direct and indirect evidence with regard to the effects difference between two treatments. A Bayesian node-splitting model was first proposed and a similar frequentist side-splitting model has been put forward recently. Yet, assigning the inconsistency parameter to one or the other of the two treatments or splitting the parameter symmetrically between the two treatments can yield different results when multi-arm trials are involved in the evaluation. We aimed to show that a side-splitting model can be viewed as a special case of design-by-treatment interaction model, and different parameterizations correspond to different design-by-treatment interactions. We demonstrated how to evaluate the side-splitting model using the arm-based generalized linear mixed model, and an example data set was used to compare results from the arm-based models with those from the contrast-based models. The three parameterizations of side-splitting make slightly different assumptions: the symmetrical method assumes that both treatments in a treatment contrast contribute to inconsistency between direct and indirect evidence, whereas the other two parameterizations assume that only one of the two treatments contributes to this inconsistency. With this understanding in mind, meta-analysts can then make a choice about how to implement the side-splitting method for their analysis. Copyright © 2016 International Society for Pharmacoeconomics and Outcomes Research (ISPOR). Published by Elsevier Inc. All rights reserved.

  7. Simulated mixed absorbers and effective atomic numbers for γ ...

    Indian Academy of Sciences (India)

    Keywords. γ-rays; γ attenuation; simulated mixed absorbers; effective atomic ... We have tried to simulate composite (mixed) absorbers ... Experimental method .... puter, Program manual, Centre for Radiation Research, National Bureau of ...

  8. Entropy correlation and entanglement for mixed states in an algebraic model

    International Nuclear Information System (INIS)

    Hou Xiwen; Chen Jinghua; Wan Mingfang; Ma Zhongqi

    2009-01-01

    As an alternative with potential connections to actual experiments, other than the systems more usually used in the field of entanglement, the dynamics of entropy correlation and entanglement between two anharmonic vibrations in a well-established algebraic model, with parameters extracted from fitting to highly excited spectral experimental results for molecules H 2 O and SO 2 , is studied in terms of the linear entropy and two negativities for various initial states that are respectively taken to be the mixed density matrices of thermal states and squeezed states on each mode. For a suitable parameter in initial states the entropies in two stretches can show positive correlation or anti-correlation. And the linear entropy of each mode is positively correlated with the negativities just for the mixed-squeezed states with small parameters in H 2 O while they do not display any correlation in other cases. For the mixed-squeezed states the negativities exhibit dominantly positive correlations with an effective mutual entropy. The differences in the linear entropy and the negativities between H 2 O and SO 2 are discussed as well. Those are useful for molecular quantum computing and quantum information processing

  9. Electron Cloud Effect in the Linear Colliders

    International Nuclear Information System (INIS)

    Pivi, M

    2004-01-01

    Beam induced multipacting, driven by the electric field of successive positively charged bunches, may arise from a resonant motion of electrons, generated by secondary emission, bouncing back and forth between opposite walls of the vacuum chamber. The electron-cloud effect (ECE) has been observed or is expected at many storage rings [1]. In the beam pipe of the Damping Ring (DR) of a linear collider, an electron cloud is produced initially by ionization of the residual gas and photoelectrons from the synchrotron radiation. The cloud is then sustained by secondary electron emission. This electron cloud can reach equilibrium after the passage of only a few bunches. The electron-cloud effect may be responsible for collective effects as fast coupled-bunch and single-bunch instability, emittance blow-up or incoherent tune shift when the bunch current exceeds a certain threshold, accompanied by a large number of electrons in the vacuum chamber. The ECE was identified as one of the most important R and D topics in the International Linear Collider Report [2]. Systematic studies on the possible electron-cloud effect have been initiated at SLAC for the GLC/NLC and TESLA linear colliders, with particular attention to the effect in the positron main damping ring (MDR) and the positron Low Emittance Transport which includes the bunch compressor system (BCS), the main linac, and the beam delivery system (BDS). We present recent computer simulation results for the main features of the electron cloud generation in both machine designs. Thus, single and coupled-bunch instability thresholds are estimated for the GLC/NLC design

  10. Nested generalized linear mixed model with ordinal response: Simulation and application on poverty data in Java Island

    Science.gov (United States)

    Widyaningsih, Yekti; Saefuddin, Asep; Notodiputro, Khairil A.; Wigena, Aji H.

    2012-05-01

    The objective of this research is to build a nested generalized linear mixed model using an ordinal response variable with some covariates. There are three main jobs in this paper, i.e. parameters estimation procedure, simulation, and implementation of the model for the real data. At the part of parameters estimation procedure, concepts of threshold, nested random effect, and computational algorithm are described. The simulations data are built for 3 conditions to know the effect of different parameter values of random effect distributions. The last job is the implementation of the model for the data about poverty in 9 districts of Java Island. The districts are Kuningan, Karawang, and Majalengka chose randomly in West Java; Temanggung, Boyolali, and Cilacap from Central Java; and Blitar, Ngawi, and Jember from East Java. The covariates in this model are province, number of bad nutrition cases, number of farmer families, and number of health personnel. In this modeling, all covariates are grouped as ordinal scale. Unit observation in this research is sub-district (kecamatan) nested in district, and districts (kabupaten) are nested in province. For the result of simulation, ARB (Absolute Relative Bias) and RRMSE (Relative Root of mean square errors) scale is used. They show that prov parameters have the highest bias, but more stable RRMSE in all conditions. The simulation design needs to be improved by adding other condition, such as higher correlation between covariates. Furthermore, as the result of the model implementation for the data, only number of farmer family and number of medical personnel have significant contributions to the level of poverty in Central Java and East Java province, and only district 2 (Karawang) of province 1 (West Java) has different random effect from the others. The source of the data is PODES (Potensi Desa) 2008 from BPS (Badan Pusat Statistik).

  11. Transformation of Summary Statistics from Linear Mixed Model Association on All-or-None Traits to Odds Ratio.

    Science.gov (United States)

    Lloyd-Jones, Luke R; Robinson, Matthew R; Yang, Jian; Visscher, Peter M

    2018-04-01

    Genome-wide association studies (GWAS) have identified thousands of loci that are robustly associated with complex diseases. The use of linear mixed model (LMM) methodology for GWAS is becoming more prevalent due to its ability to control for population structure and cryptic relatedness and to increase power. The odds ratio (OR) is a common measure of the association of a disease with an exposure ( e.g. , a genetic variant) and is readably available from logistic regression. However, when the LMM is applied to all-or-none traits it provides estimates of genetic effects on the observed 0-1 scale, a different scale to that in logistic regression. This limits the comparability of results across studies, for example in a meta-analysis, and makes the interpretation of the magnitude of an effect from an LMM GWAS difficult. In this study, we derived transformations from the genetic effects estimated under the LMM to the OR that only rely on summary statistics. To test the proposed transformations, we used real genotypes from two large, publicly available data sets to simulate all-or-none phenotypes for a set of scenarios that differ in underlying model, disease prevalence, and heritability. Furthermore, we applied these transformations to GWAS summary statistics for type 2 diabetes generated from 108,042 individuals in the UK Biobank. In both simulation and real-data application, we observed very high concordance between the transformed OR from the LMM and either the simulated truth or estimates from logistic regression. The transformations derived and validated in this study improve the comparability of results from prospective and already performed LMM GWAS on complex diseases by providing a reliable transformation to a common comparative scale for the genetic effects. Copyright © 2018 by the Genetics Society of America.

  12. Subpixel Mapping of Hyperspectral Image Based on Linear Subpixel Feature Detection and Object Optimization

    Science.gov (United States)

    Liu, Zhaoxin; Zhao, Liaoying; Li, Xiaorun; Chen, Shuhan

    2018-04-01

    Owing to the limitation of spatial resolution of the imaging sensor and the variability of ground surfaces, mixed pixels are widesperead in hyperspectral imagery. The traditional subpixel mapping algorithms treat all mixed pixels as boundary-mixed pixels while ignoring the existence of linear subpixels. To solve this question, this paper proposed a new subpixel mapping method based on linear subpixel feature detection and object optimization. Firstly, the fraction value of each class is obtained by spectral unmixing. Secondly, the linear subpixel features are pre-determined based on the hyperspectral characteristics and the linear subpixel feature; the remaining mixed pixels are detected based on maximum linearization index analysis. The classes of linear subpixels are determined by using template matching method. Finally, the whole subpixel mapping results are iteratively optimized by binary particle swarm optimization algorithm. The performance of the proposed subpixel mapping method is evaluated via experiments based on simulated and real hyperspectral data sets. The experimental results demonstrate that the proposed method can improve the accuracy of subpixel mapping.

  13. A multiple objective mixed integer linear programming model for power generation expansion planning

    Energy Technology Data Exchange (ETDEWEB)

    Antunes, C. Henggeler; Martins, A. Gomes [INESC-Coimbra, Coimbra (Portugal); Universidade de Coimbra, Dept. de Engenharia Electrotecnica, Coimbra (Portugal); Brito, Isabel Sofia [Instituto Politecnico de Beja, Escola Superior de Tecnologia e Gestao, Beja (Portugal)

    2004-03-01

    Power generation expansion planning inherently involves multiple, conflicting and incommensurate objectives. Therefore, mathematical models become more realistic if distinct evaluation aspects, such as cost and environmental concerns, are explicitly considered as objective functions rather than being encompassed by a single economic indicator. With the aid of multiple objective models, decision makers may grasp the conflicting nature and the trade-offs among the different objectives in order to select satisfactory compromise solutions. This paper presents a multiple objective mixed integer linear programming model for power generation expansion planning that allows the consideration of modular expansion capacity values of supply-side options. This characteristic of the model avoids the well-known problem associated with continuous capacity values that usually have to be discretized in a post-processing phase without feedback on the nature and importance of the changes in the attributes of the obtained solutions. Demand-side management (DSM) is also considered an option in the planning process, assuming there is a sufficiently large portion of the market under franchise conditions. As DSM full costs are accounted in the model, including lost revenues, it is possible to perform an evaluation of the rate impact in order to further inform the decision process (Author)

  14. Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations

    DEFF Research Database (Denmark)

    Sahana, Goutam; Mailund, Thomas; Lund, Mogens Sandø

    2011-01-01

    be extended to incorporate other effects in a straightforward and rigorous fashion. Here, we present a complementary approach, called ‘GENMIX (genealogy based mixed model)’ which combines advantages from two powerful GWAS methods: genealogy-based haplotype grouping and MMA. Subjects and Methods: We validated......Introduction: The state-of-the-art for dealing with multiple levels of relationship among the samples in genome-wide association studies (GWAS) is unified mixed model analysis (MMA). This approach is very flexible, can be applied to both family-based and population-based samples, and can...

  15. Effects of mixing on methane production during thermophilic anaerobic digestion of manure

    DEFF Research Database (Denmark)

    Kaparaju, Prasad Laxmi-Narasimha; Buendia, Inmaculada M.; Ellegaard, Lars

    2008-01-01

    The effect of mixing on anaerobic digestion of manure was evaluated in lab-scale and pilot-scale experiments at 55 °C. The effect of continuous (control), minimal (mixing for 10 min prior to extraction/feeding) and intermittent mixing (withholding mixing for 2 h prior to extraction/feeding) on me...

  16. Linear Magnetoelectric Effect by Orbital Magnetism

    NARCIS (Netherlands)

    Scaramucci, A.; Bousquet, E.; Fechner, M.; Mostovoy, M.; Spaldin, N. A.

    2012-01-01

    We use symmetry analysis and first-principles calculations to show that the linear magnetoelectric effect can originate from the response of orbital magnetic moments to the polar distortions induced by an applied electric field. Using LiFePO4 as a model compound we show that spin-orbit coupling

  17. Theory of fidelity measure in degenerate four-wave mixing

    International Nuclear Information System (INIS)

    Bochove, E.J.

    1983-01-01

    Phase-conjugate beam fidelity is studied in degenerate four-wave mixing with spatially varying pump beams. The analysis includes the effects of probe depletion, diffracting non-linear phase variation focussing, and finally that of losses. Relatively simple algebraic expressions are found for the phase conjugate reflectivity for the cases of collinear and near-collinear beam gemetries. It is found that by focussing the probe beam into the mixing medium, the fraction of energy in the phase conjugate beam which was transferred to other modes, may typically be reduced by one order of magnitude. (Author) [pt

  18. Effect of Image Linearization on Normalized Compression Distance

    Science.gov (United States)

    Mortensen, Jonathan; Wu, Jia Jie; Furst, Jacob; Rogers, John; Raicu, Daniela

    Normalized Information Distance, based on Kolmogorov complexity, is an emerging metric for image similarity. It is approximated by the Normalized Compression Distance (NCD) which generates the relative distance between two strings by using standard compression algorithms to compare linear strings of information. This relative distance quantifies the degree of similarity between the two objects. NCD has been shown to measure similarity effectively on information which is already a string: genomic string comparisons have created accurate phylogeny trees and NCD has also been used to classify music. Currently, to find a similarity measure using NCD for images, the images must first be linearized into a string, and then compared. To understand how linearization of a 2D image affects the similarity measure, we perform four types of linearization on a subset of the Corel image database and compare each for a variety of image transformations. Our experiment shows that different linearization techniques produce statistically significant differences in NCD for identical spatial transformations.

  19. Comparison of linear, mixed integer and non-linear programming methods in energy system dispatch modelling

    DEFF Research Database (Denmark)

    Ommen, Torben Schmidt; Markussen, Wiebke Brix; Elmegaard, Brian

    2014-01-01

    In the paper, three frequently used operation optimisation methods are examined with respect to their impact on operation management of the combined utility technologies for electric power and DH (district heating) of eastern Denmark. The investigation focusses on individual plant operation...... differences and differences between the solution found by each optimisation method. One of the investigated approaches utilises LP (linear programming) for optimisation, one uses LP with binary operation constraints, while the third approach uses NLP (non-linear programming). The LP model is used...... as a benchmark, as this type is frequently used, and has the lowest amount of constraints of the three. A comparison of the optimised operation of a number of units shows significant differences between the three methods. Compared to the reference, the use of binary integer variables, increases operation...

  20. The effects of mixing on age of air

    OpenAIRE

    Garny, H.; Birner, T.; Bönisch, H.; Bunzel, F.

    2014-01-01

    Mean age of air (AoA) measures the mean transit time of air parcels along the Brewer-Dobson circulation (BDC) starting from their entry into the stratosphere. AoA is determined both by transport along the residual circulation and by two-way mass exchange (mixing). The relative roles of residual circulation transport and two-way mixing for AoA, and for projected AoA changes are not well understood. Here effects of mixing on AoA are quantified by contrasting AoA with the transit time of hypothe...

  1. Non-linear thermal engineering, chaotic advection and mixing; Thermique non-lineaire, melange et advection chaotique

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1999-12-31

    This conference day was jointly organized by the `university group of thermal engineering (GUT)` and the French association of thermal engineers. This book of proceedings contains 7 papers entitled: `energy spectra of a passive scalar undergoing advection by a chaotic flow`; `analysis of chaotic behaviours: from topological characterization to modeling`; `temperature homogeneity by Lagrangian chaos in a direct current flow heat exchanger: numerical approach`; ` thermal instabilities in a mixed convection phenomenon: nonlinear dynamics`; `experimental characterization study of the 3-D Lagrangian chaos by thermal analogy`; `influence of coherent structures on the mixing of a passive scalar`; `evaluation of the performance index of a chaotic advection effect heat exchanger for a wide range of Reynolds numbers`. (J.S.)

  2. Non-linear thermal engineering, chaotic advection and mixing; Thermique non-lineaire, melange et advection chaotique

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-12-31

    This conference day was jointly organized by the `university group of thermal engineering (GUT)` and the French association of thermal engineers. This book of proceedings contains 7 papers entitled: `energy spectra of a passive scalar undergoing advection by a chaotic flow`; `analysis of chaotic behaviours: from topological characterization to modeling`; `temperature homogeneity by Lagrangian chaos in a direct current flow heat exchanger: numerical approach`; ` thermal instabilities in a mixed convection phenomenon: nonlinear dynamics`; `experimental characterization study of the 3-D Lagrangian chaos by thermal analogy`; `influence of coherent structures on the mixing of a passive scalar`; `evaluation of the performance index of a chaotic advection effect heat exchanger for a wide range of Reynolds numbers`. (J.S.)

  3. Modeling Learning in Doubly Multilevel Binary Longitudinal Data Using Generalized Linear Mixed Models: An Application to Measuring and Explaining Word Learning.

    Science.gov (United States)

    Cho, Sun-Joo; Goodwin, Amanda P

    2016-04-01

    When word learning is supported by instruction in experimental studies for adolescents, word knowledge outcomes tend to be collected from complex data structure, such as multiple aspects of word knowledge, multilevel reader data, multilevel item data, longitudinal design, and multiple groups. This study illustrates how generalized linear mixed models can be used to measure and explain word learning for data having such complexity. Results from this application provide deeper understanding of word knowledge than could be attained from simpler models and show that word knowledge is multidimensional and depends on word characteristics and instructional contexts.

  4. Variable Selection in Heterogeneous Datasets: A Truncated-rank Sparse Linear Mixed Model with Applications to Genome-wide Association Studies.

    Science.gov (United States)

    Wang, Haohan; Aragam, Bryon; Xing, Eric P

    2018-04-26

    A fundamental and important challenge in modern datasets of ever increasing dimensionality is variable selection, which has taken on renewed interest recently due to the growth of biological and medical datasets with complex, non-i.i.d. structures. Naïvely applying classical variable selection methods such as the Lasso to such datasets may lead to a large number of false discoveries. Motivated by genome-wide association studies in genetics, we study the problem of variable selection for datasets arising from multiple subpopulations, when this underlying population structure is unknown to the researcher. We propose a unified framework for sparse variable selection that adaptively corrects for population structure via a low-rank linear mixed model. Most importantly, the proposed method does not require prior knowledge of sample structure in the data and adaptively selects a covariance structure of the correct complexity. Through extensive experiments, we illustrate the effectiveness of this framework over existing methods. Further, we test our method on three different genomic datasets from plants, mice, and human, and discuss the knowledge we discover with our method. Copyright © 2018. Published by Elsevier Inc.

  5. A guide to developing resource selection functions from telemetry data using generalized estimating equations and generalized linear mixed models

    Directory of Open Access Journals (Sweden)

    Nicola Koper

    2012-03-01

    Full Text Available Resource selection functions (RSF are often developed using satellite (ARGOS or Global Positioning System (GPS telemetry datasets, which provide a large amount of highly correlated data. We discuss and compare the use of generalized linear mixed-effects models (GLMM and generalized estimating equations (GEE for using this type of data to develop RSFs. GLMMs directly model differences among caribou, while GEEs depend on an adjustment of the standard error to compensate for correlation of data points within individuals. Empirical standard errors, rather than model-based standard errors, must be used with either GLMMs or GEEs when developing RSFs. There are several important differences between these approaches; in particular, GLMMs are best for producing parameter estimates that predict how management might influence individuals, while GEEs are best for predicting how management might influence populations. As the interpretation, value, and statistical significance of both types of parameter estimates differ, it is important that users select the appropriate analytical method. We also outline the use of k-fold cross validation to assess fit of these models. Both GLMMs and GEEs hold promise for developing RSFs as long as they are used appropriately.

  6. Sensitivity studies of different aerosol indirect effects in mixed-phase clouds

    Science.gov (United States)

    Lohmann, U.; Hoose, C.

    2009-11-01

    Aerosols affect the climate system by changing cloud characteristics. Using the global climate model ECHAM5-HAM, we investigate different aerosol effects on mixed-phase clouds: The glaciation effect, which refers to a more frequent glaciation due to anthropogenic aerosols, versus the de-activation effect, which suggests that ice nuclei become less effective because of an anthropogenic sulfate coating. The glaciation effect can partly offset the indirect aerosol effect on warm clouds and thus causes the total anthropogenic aerosol effect to be smaller. It is investigated by varying the parameterization for the Bergeron-Findeisen process and the threshold coating thickness of sulfate (SO4-crit), which is required to convert an externally mixed aerosol particle into an internally mixed particle. Differences in the net radiation at the top-of-the-atmosphere due to anthropogenic aerosols between the different sensitivity studies amount up to 0.5 W m-2. This suggests that the investigated mixed-phase processes have a major effect on the total anthropogenic aerosol effect.

  7. Non-linear effects in the Snoek relaxation of Nb-O

    International Nuclear Information System (INIS)

    Hermida, E.B.; Povolo, F.

    1996-01-01

    Internal friction peaks measured as a function of temperature or frequency have been associated to non-linear processes only after studying how the amplitude of the applied stress affects the relaxation process. Here it is demonstrated that the partial derivative of the internal friction with respect to the frequency at constant temperature is a useful tool to determine that non-linear effects are involved. This analysis applied to actual data of the Snoek relaxation in Nb-O, reveals that at high interstitial contents non-linear effects appear. (orig.)

  8. Effects of mixing and stirring on the critical behaviour

    International Nuclear Information System (INIS)

    Antonov, N V; Hnatich, Michal; Honkonen, Juha

    2006-01-01

    Stochastic dynamics of a nonconserved scalar order parameter near its critical point, subject to random stirring and mixing, is studied using the field-theoretic renormalization group. The stirring and mixing are modelled by a random external Gaussian noise with the correlation function ∼δ(t - t')k 4-d-y and the divergence-free (due to incompressibility) velocity field, governed by the stochastic Navier-Stokes equation with a random Gaussian force with the correlation function ∝ δ(t-t')k 4-d-y' . Depending on the relations between the exponents y and y' and the space dimensionality d, the model reveals several types of scaling regimes. Some of them are well known (model A of equilibrium critical dynamics and linear passive scalar field advected by a random turbulent flow), but there are three new non-equilibrium regimes (universality classes) associated with new nontrivial fixed points of the renormalization group equations. The corresponding critical dimensions are calculated in the two-loop approximation (second order of the triple expansion in y, y' and ε = 4 - d)

  9. Stability analysis of linear switching systems with time delays

    International Nuclear Information System (INIS)

    Li Ping; Zhong Shouming; Cui Jinzhong

    2009-01-01

    The issue of stability analysis of linear switching system with discrete and distributed time delays is studied in this paper. An appropriate switching rule is applied to guarantee the stability of the whole switching system. Our results use a Riccati-type Lyapunov functional under a condition on the time delay. So, switching systems with mixed delays are developed. A numerical example is given to illustrate the effectiveness of our results.

  10. Mixed-Integer Conic Linear Programming: Challenges and Perspectives

    Science.gov (United States)

    2013-10-01

    The novel DCCs for MISOCO may be used in branch- and-cut algorithms when solving MISOCO problems. The experimental software CICLO was developed to...perform limited, but rigorous computational experiments. The CICLO solver utilizes continuous SOCO solvers, MOSEK, CPLES or SeDuMi, builds on the open...submitted Fall 2013. Software: 1. CICLO : Integer conic linear optimization package. Authors: J.C. Góez, T.K. Ralphs, Y. Fu, and T. Terlaky

  11. Non-linear effects in transition edge sensors for X-ray detection

    International Nuclear Information System (INIS)

    Bandler, S.R.; Figueroa-Feliciano, E.; Iyomoto, N.; Kelley, R.L.; Kilbourne, C.A.; Murphy, K.D.; Porter, F.S.; Saab, T.; Sadleir, J.

    2006-01-01

    In a microcalorimeter that uses a transition-edge sensor to detect energy depositions, the small signal energy resolution improves with decreasing heat capacity. This improvement remains true up to the point where non-linear and saturation effects become significant. This happens when the energy deposition causes a significant change in the sensor resistance. Not only does the signal size become a non-linear function of the energy deposited, but also the noise becomes non-stationary over the duration of the pulse. Algorithms have been developed that can calculate the optimal performance given this non-linear behavior that typically requires significant processing and calibration work-both of which are impractical for space missions. We have investigated the relative importance of the various non-linear effects, with the hope that a computationally simple transformation can overcome the largest of the non-linear and non-stationary effects, producing a highly linear 'gain' for pulse-height versus energy, and close to the best energy resolution at all energies when using a Wiener filter

  12. Efficient non-linear two-photon effects from the Cesium 6D manifold

    Science.gov (United States)

    Haluska, Nathan D.; Perram, Glen P.; Rice, Christopher A.

    2018-02-01

    We report several non-linear process that occur when two-photon pumping the cesium 6D states. Cesium vapor possess some of the largest two-photon pump cross sections in nature. Pumping these cross sections leads to strong amplified spontaneous emission that we observe on over 17 lasing lines. These new fields are strong enough to couple with the pump to create additional tunable lines. We use a heat pipe with cesium densities of 1014 to 1016 cm-3 and 0 to 5 Torr of helium buffer gas. The cesium 6D States are interrogated by both high energy pulses and low power CW sources. We observe four-wave mixing, six-wave mixing, potential two-photon lasing, other unknown nonlinear processes, and the persistence of some processes at low thresholds. This system is also uniquely qualified to support two-photon lasing under the proper conditions.

  13. The Effects of Fat Structures and Ice Cream Mix Viscosity on Physical and Sensory Properties of Ice Cream.

    Science.gov (United States)

    Amador, Julia; Hartel, Rich; Rankin, Scott

    2017-08-01

    The purpose of this work was to investigate iciness perception and other sensory textural attributes of ice cream due to ice and fat structures and mix viscosity. Two studies were carried out varying processing conditions and mix formulation. In the 1st study, ice creams were collected at -3, -5, and -7.5 °C draw temperatures. These ice creams contained 0%, 0.1%, or 0.2% emulsifier, an 80:20 blend of mono- and diglycerides: polysorbate 80. In the 2nd study, ice creams were collected at -3 °C draw temperature and contained 0%, 0.2%, or 0.4% stabilizer, a blend of guar gum, locust bean gum, and carrageenan. Multiple linear regressions were used to determine relationships between ice crystal size, destabilized fat, and sensory iciness. In the ice and fat structure study, an inverse correlation was found between fat destabilization and sensory iciness. Ice creams with no difference in ice crystal size were perceived to be less icy with increasing amounts of destabilized fat. Destabilized fat correlated inversely with drip-through rate and sensory greasiness. In the ice cream mix viscosity study, an inverse correlation was found between mix viscosity and sensory iciness. Ice creams with no difference in ice crystal size were perceived to be less icy when formulated with higher mix viscosity. A positive correlation was found between mix viscosity and sensory greasiness. These results indicate that fat structures and mix viscosity have significant effects on ice cream microstructure and sensory texture including the reduction of iciness perception. © 2017 Institute of Food Technologists®.

  14. Effect of Genetic and Environmental Factors on Linear Udder ...

    African Journals Online (AJOL)

    The effects of evaluators, sex of calf, breed, sire, parity, month of calving and season of lactation on linear udder conformation traits and milk yield was investigated in the dairy herd of the National Animal Production Research Institute, Shika, Zaria, Nigeria. Seven linear udder conformation traits coupled with milk yield of 25 ...

  15. Sensitivity studies of different aerosol indirect effects in mixed-phase clouds

    Directory of Open Access Journals (Sweden)

    C. Hoose

    2009-11-01

    Full Text Available Aerosols affect the climate system by changing cloud characteristics. Using the global climate model ECHAM5-HAM, we investigate different aerosol effects on mixed-phase clouds: The glaciation effect, which refers to a more frequent glaciation due to anthropogenic aerosols, versus the de-activation effect, which suggests that ice nuclei become less effective because of an anthropogenic sulfate coating. The glaciation effect can partly offset the indirect aerosol effect on warm clouds and thus causes the total anthropogenic aerosol effect to be smaller. It is investigated by varying the parameterization for the Bergeron-Findeisen process and the threshold coating thickness of sulfate (SO4-crit, which is required to convert an externally mixed aerosol particle into an internally mixed particle. Differences in the net radiation at the top-of-the-atmosphere due to anthropogenic aerosols between the different sensitivity studies amount up to 0.5 W m−2. This suggests that the investigated mixed-phase processes have a major effect on the total anthropogenic aerosol effect.

  16. Generating synthetic wave climates for coastal modelling: a linear mixed modelling approach

    Science.gov (United States)

    Thomas, C.; Lark, R. M.

    2013-12-01

    Numerical coastline morphological evolution models require wave climate properties to drive morphological change through time. Wave climate properties (typically wave height, period and direction) may be temporally fixed, culled from real wave buoy data, or allowed to vary in some way defined by a Gaussian or other pdf. However, to examine sensitivity of coastline morphologies to wave climate change, it seems desirable to be able to modify wave climate time series from a current to some new state along a trajectory, but in a way consistent with, or initially conditioned by, the properties of existing data, or to generate fully synthetic data sets with realistic time series properties. For example, mean or significant wave height time series may have underlying periodicities, as revealed in numerous analyses of wave data. Our motivation is to develop a simple methodology to generate synthetic wave climate time series that can change in some stochastic way through time. We wish to use such time series in a coastline evolution model to test sensitivities of coastal landforms to changes in wave climate over decadal and centennial scales. We have worked initially on time series of significant wave height, based on data from a Waverider III buoy located off the coast of Yorkshire, England. The statistical framework for the simulation is the linear mixed model. The target variable, perhaps after transformation (Box-Cox), is modelled as a multivariate Gaussian, the mean modelled as a function of a fixed effect, and two random components, one of which is independently and identically distributed (iid) and the second of which is temporally correlated. The model was fitted to the data by likelihood methods. We considered the option of a periodic mean, the period either fixed (e.g. at 12 months) or estimated from the data. We considered two possible correlation structures for the second random effect. In one the correlation decays exponentially with time. In the second

  17. A turbulent mixing Reynolds stress model fitted to match linear interaction analysis predictions

    International Nuclear Information System (INIS)

    Griffond, J; Soulard, O; Souffland, D

    2010-01-01

    To predict the evolution of turbulent mixing zones developing in shock tube experiments with different gases, a turbulence model must be able to reliably evaluate the production due to the shock-turbulence interaction. In the limit of homogeneous weak turbulence, 'linear interaction analysis' (LIA) can be applied. This theory relies on Kovasznay's decomposition and allows the computation of waves transmitted or produced at the shock front. With assumptions about the composition of the upstream turbulent mixture, one can connect the second-order moments downstream from the shock front to those upstream through a transfer matrix, depending on shock strength. The purpose of this work is to provide a turbulence model that matches LIA results for the shock-turbulent mixture interaction. Reynolds stress models (RSMs) with additional equations for the density-velocity correlation and the density variance are considered here. The turbulent states upstream and downstream from the shock front calculated with these models can also be related through a transfer matrix, provided that the numerical implementation is based on a pseudo-pressure formulation. Then, the RSM should be modified in such a way that its transfer matrix matches the LIA one. Using the pseudo-pressure to introduce ad hoc production terms, we are able to obtain a close agreement between LIA and RSM matrices for any shock strength and thus improve the capabilities of the RSM.

  18. Ultrafast Single-Shot Optical Oscilloscope based on Time-to-Space Conversion due to Temporal and Spatial Walk-Off Effects in Nonlinear Mixing Crystal

    Science.gov (United States)

    Takagi, Yoshihiro; Yamada, Yoshifumi; Ishikawa, Kiyoshi; Shimizu, Seiji; Sakabe, Shuji

    2005-09-01

    A simple method for single-shot sub-picosecond optical pulse diagnostics has been demonstrated by imaging the time evolution of the optical mixing onto the beam cross section of the sum-frequency wave when the interrogating pulse passes over the tested pulse in the mixing crystal as a result of the combined effect of group-velocity difference and walk-off beam propagation. A high linearity of the time-to-space projection is deduced from the process solely dependent upon the spatial uniformity of the refractive indices. A snap profile of the accidental coincidence between asynchronous pulses from separate mode-locked lasers has been detected, which demonstrates the single-shot ability.

  19. Effect of precession on the mixing of a jet

    Energy Technology Data Exchange (ETDEWEB)

    Nobes, D.S. [Alberta Univ., Edmonton, AB (Canada). Dept. of Mechanical Engineering; Nathan, G.J. [Adelaide Univ., Adelaide (Australia). Dept. of Mechanical Engineering

    2007-07-01

    The mixing of fuel and oxidant are fundamentally linked to the performance characteristics of a diffusion flame, including radiant emissions, flame stability, pollutant emissions and overall dimensions such as flame length and width. Modification of these characteristics through the mixing field can be achieved by appropriate nozzle design. One method is to precess the nozzle fluid which can be gained by fluidic or mechanical means. This paper described the effect of precession on the mixing field from a mechanical nozzle using a two-dimensional imaging technique based on Mie scattering. The paper discussed the experimental technique as well as the results and discussion. The effect of precessing the jet was to create a large scale helix in the near field that contained two counter-rotating vortices within it. This flow supplied high concentration fluid to a region above the nozzle exit that had low momentum and low shear. The resulting flow field had scale mixing larger than the local length scales of the flow in a region close to the nozzle exit. It was found that the flow field beyond this region had low rate of mixing similar to the far field of a jet. 11 refs., 5 figs.

  20. Mixed and mixed-hybrid elements for the diffusion equation

    International Nuclear Information System (INIS)

    Coulomb, F.; Fedon-Magnaud, C.

    1987-04-01

    To solve the diffusion equation, one often uses a Lagrangian finite element method. We want to introduce the mixed elements which allow a simultaneous approximation of the same order for the flux and its gradient. Though the linear systems are not positive definite, it is possible to make them so by eliminating some of the unknowns

  1. Experimental study of laminar mixed convection in a rod bundle with mixing vane spacer grids

    Energy Technology Data Exchange (ETDEWEB)

    Mohanta, Lokanath, E-mail: lxm971@psu.edu [Department of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, PA 16802 (United States); Cheung, Fan-Bill [Department of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, PA 16802 (United States); Bajorek, Stephen M.; Tien, Kirk; Hoxie, Chris L. [Office of Nuclear Regulatory Research, U.S. Nuclear Regulatory Commission, Washington, DC 20555-0001 (United States)

    2017-02-15

    Highlights: • Investigated the heat transfer during mixed laminar convection in a rod bundle with linearly varying heat flux. • The Nusselt number increases downstream of the inlet with increasing Richardson number. • Developed an enhancement factor to account for the effects of mixed convection over the forced laminar heat transfer. - Abstract: Heat transfer by mixed convection in a rod bundle occurs when convection is affected by both the buoyancy and inertial forces. Mixed convection can be assumed when the Richardson number (Ri = Gr/Re{sup 2}) is on the order of unity, indicating that both forced and natural convection are important contributors to heat transfer. In the present study, data obtained from the Rod Bundle Heat Transfer (RBHT) facility was used to determine the heat transfer coefficient in the mixed convection regime, which was found to be significantly larger than those expected assuming purely forced convection based on the inlet flow rate. The inlet Reynolds (Re) number for the tests ranged from 500 to 1300, while the Grashof (Gr) number varied from 1.5 × 10{sup 5} to 3.8 × 10{sup 6} yielding 0.25 < Ri < 4.3. Using results from RBHT test along with the correlation from the FLECHT-SEASET test program for laminar forced convection, a new correlation ​is proposed for mixed convection in a rod bundle. The new correlation accounts for the enhancement of heat transfer relative to laminar forced convection.

  2. Vectorized Matlab Codes for Linear Two-Dimensional Elasticity

    Directory of Open Access Journals (Sweden)

    Jonas Koko

    2007-01-01

    Full Text Available A vectorized Matlab implementation for the linear finite element is provided for the two-dimensional linear elasticity with mixed boundary conditions. Vectorization means that there is no loop over triangles. Numerical experiments show that our implementation is more efficient than the standard implementation with a loop over all triangles.

  3. THE EFFECT OF SOLAR RADIATION ON AUTOMOBILE ENVIRONMENT THROUGH NATURAL CONVECTION AND MIXED CONVECTION

    Directory of Open Access Journals (Sweden)

    MD. FAISAL KADER

    2012-10-01

    Full Text Available In the present paper, the effect of solar radiation on automobiles has been studied by both experimentally and numerically. The numerical solution is done by an operation friendly and fast CFD code – SC/Tetra with a full scale model of a SM3 car and turbulence is modeled by the standard k-ε equation. Numerical analysis of the three-dimensional model predicts a detailed description of fluid flow and temperature distribution in the passenger compartment during both the natural convection due to the incoming solar radiation and mixed convection due to the flow from defrost nozzle and radiation. It can be seen that solar radiation is an important parameter to raise the compartment temperature above the ambient temperature during summer. During natural convection, the rate of heat transfer is fast at the initial period. In the mixed convection analyses, it is found that the temperature drops down to a comfortable range almost linearly at the initial stage. Experimental investigations are performed to determine the temperature contour on the windshield and the local temperature at a particular point for further validation of the numerical results.

  4. Half-trek criterion for generic identifiability of linear structural equation models

    NARCIS (Netherlands)

    Foygel, R.; Draisma, J.; Drton, M.

    2012-01-01

    A linear structural equation model relates random variables of interest and corresponding Gaussian noise terms via a linear equation system. Each such model can be represented by a mixed graph in which directed edges encode the linear equations, and bidirected edges indicate possible correlations

  5. Half-trek criterion for generic identifiability of linear structural equation models

    NARCIS (Netherlands)

    Foygel, R.; Draisma, J.; Drton, M.

    2011-01-01

    A linear structural equation model relates random variables of interest and corresponding Gaussian noise terms via a linear equation system. Each such model can be represented by a mixed graph in which directed edges encode the linear equations, and bidirected edges indicate possible correlations

  6. Solving a mixed-integer linear programming model for a multi-skilled project scheduling problem by simulated annealing

    Directory of Open Access Journals (Sweden)

    H Kazemipoor

    2012-04-01

    Full Text Available A multi-skilled project scheduling problem (MSPSP has been generally presented to schedule a project with staff members as resources. Each activity in project network requires different skills and also staff members have different skills, too. This causes the MSPSP becomes a special type of a multi-mode resource-constrained project scheduling problem (MM-RCPSP with a huge number of modes. Given the importance of this issue, in this paper, a mixed integer linear programming for the MSPSP is presented. Due to the complexity of the problem, a meta-heuristic algorithm is proposed in order to find near optimal solutions. To validate performance of the algorithm, results are compared against exact solutions solved by the LINGO solver. The results are promising and show that optimal or near-optimal solutions are derived for small instances and good solutions for larger instances in reasonable time.

  7. Hybrid Spectral Unmixing: Using Artificial Neural Networks for Linear/Non-Linear Switching

    Directory of Open Access Journals (Sweden)

    Asmau M. Ahmed

    2017-07-01

    Full Text Available Spectral unmixing is a key process in identifying spectral signature of materials and quantifying their spatial distribution over an image. The linear model is expected to provide acceptable results when two assumptions are satisfied: (1 The mixing process should occur at macroscopic level and (2 Photons must interact with single material before reaching the sensor. However, these assumptions do not always hold and more complex nonlinear models are required. This study proposes a new hybrid method for switching between linear and nonlinear spectral unmixing of hyperspectral data based on artificial neural networks. The neural networks was trained with parameters within a window of the pixel under consideration. These parameters are computed to represent the diversity of the neighboring pixels and are based on the Spectral Angular Distance, Covariance and a non linearity parameter. The endmembers were extracted using Vertex Component Analysis while the abundances were estimated using the method identified by the neural networks (Vertex Component Analysis, Fully Constraint Least Square Method, Polynomial Post Nonlinear Mixing Model or Generalized Bilinear Model. Results show that the hybrid method performs better than each of the individual techniques with high overall accuracy, while the abundance estimation error is significantly lower than that obtained using the individual methods. Experiments on both synthetic dataset and real hyperspectral images demonstrated that the proposed hybrid switch method is efficient for solving spectral unmixing of hyperspectral images as compared to individual algorithms.

  8. Visualizing the flow of evidence in network meta-analysis and characterizing mixed treatment comparisons.

    Science.gov (United States)

    König, Jochem; Krahn, Ulrike; Binder, Harald

    2013-12-30

    Network meta-analysis techniques allow for pooling evidence from different studies with only partially overlapping designs for getting a broader basis for decision support. The results are network-based effect estimates that take indirect evidence into account for all pairs of treatments. The results critically depend on homogeneity and consistency assumptions, which are sometimes difficult to investigate. To support such evaluation, we propose a display of the flow of evidence and introduce new measures that characterize the structure of a mixed treatment comparison. Specifically, a linear fixed effects model for network meta-analysis is considered, where the network estimates for two treatments are linear combinations of direct effect estimates comparing these or other treatments. The linear coefficients can be seen as the generalization of weights known from classical meta-analysis. We summarize properties of these coefficients and display them as a weighted directed acyclic graph, representing the flow of evidence. Furthermore, measures are introduced that quantify the direct evidence proportion, the mean path length, and the minimal parallelism of mixed treatment comparisons. The graphical display and the measures are illustrated for two published network meta-analyses. In these applications, the proposed methods are seen to render transparent the process of data pooling in mixed treatment comparisons. They can be expected to be more generally useful for guiding and facilitating the validity assessment in network meta-analysis. Copyright © 2013 John Wiley & Sons, Ltd.

  9. Physiological effects of diet mixing on consumer fitness: a meta-analysis.

    Science.gov (United States)

    Lefcheck, Jonathan S; Whalen, Matthew A; Davenport, Theresa M; Stone, Joshua P; Duffy, J Emmett

    2013-03-01

    The degree of dietary generalism among consumers has important consequences for population, community, and ecosystem processes, yet the effects on consumer fitness of mixing food types have not been examined comprehensively. We conducted a meta-analysis of 161 peer-reviewed studies reporting 493 experimental manipulations of prey diversity to test whether diet mixing enhances consumer fitness based on the intrinsic nutritional quality of foods and consumer physiology. Averaged across studies, mixed diets conferred significantly higher fitness than the average of single-species diets, but not the best single prey species. More than half of individual experiments, however, showed maximal growth and reproduction on mixed diets, consistent with the predicted benefits of a balanced diet. Mixed diets including chemically defended prey were no better than the average prey type, opposing the prediction that a diverse diet dilutes toxins. Finally, mixed-model analysis showed that the effect of diet mixing was stronger for herbivores than for higher trophic levels. The generally weak evidence for the nutritional benefits of diet mixing in these primarily laboratory experiments suggests that diet generalism is not strongly favored by the inherent physiological benefits of mixing food types, but is more likely driven by ecological and environmental influences on consumer foraging.

  10. Lincx: A Linear Logical Framework with First-class Contexts

    DEFF Research Database (Denmark)

    Linn Georges, Aina; Murawska, Agata; Otis, Shawn

    2017-01-01

    Linear logic provides an elegant framework for modelling stateful, imperative and concurrent systems by viewing a context of assumptions as a set of resources. However, mechanizing the meta-theory of such systems remains a challenge, as we need to manage and reason about mixed contexts of linear...

  11. Ion effects in future circular and linear accelerators

    International Nuclear Information System (INIS)

    Raubenheimer, T.O.

    1995-05-01

    In this paper, the author discusses ion effects relevant to future storage rings and linear colliders. The author first reviews the conventional ion effects observed in present storage rings and then discusses how these effects will differ in the next generation of rings and linacs. These future accelerators operate in a new regime because of the high current long bunch trains and the very small transverse beam emittances. Usually, storage rings are designed with ion clearing gaps to prevent ion trapping between bunch trains or beam revolutions. Regardless, ions generated within a single bunch train can have significant effects. The same is true in transport lines and linacs, where typical vacuum pressures are relatively high. Amongst other effects, the author addresses the tune spreads due to the ions and the resulting filamentation which can severely limit emittance correction techniques in future linear colliders, the bunch-to-bunch coupling due to the ions which can cause a multi-bunch instability with fast growth rates, and the betatron coupling and beam halo creation which limit the vertical emittance and beam lifetimes

  12. Effect Displays in R for Generalised Linear Models

    Directory of Open Access Journals (Sweden)

    John Fox

    2003-07-01

    Full Text Available This paper describes the implementation in R of a method for tabular or graphical display of terms in a complex generalised linear model. By complex, I mean a model that contains terms related by marginality or hierarchy, such as polynomial terms, or main effects and interactions. I call these tables or graphs effect displays. Effect displays are constructed by identifying high-order terms in a generalised linear model. Fitted values under the model are computed for each such term. The lower-order "relatives" of a high-order term (e.g., main effects marginal to an interaction are absorbed into the term, allowing the predictors appearing in the high-order term to range over their values. The values of other predictors are fixed at typical values: for example, a covariate could be fixed at its mean or median, a factor at its proportional distribution in the data, or to equal proportions in its several levels. Variations of effect displays are also described, including representation of terms higher-order to any appearing in the model.

  13. Generalized linear mixed model for binary outcomes when covariates are subject to measurement errors and detection limits.

    Science.gov (United States)

    Xie, Xianhong; Xue, Xiaonan; Strickler, Howard D

    2018-01-15

    Longitudinal measurement of biomarkers is important in determining risk factors for binary endpoints such as infection or disease. However, biomarkers are subject to measurement error, and some are also subject to left-censoring due to a lower limit of detection. Statistical methods to address these issues are few. We herein propose a generalized linear mixed model and estimate the model parameters using the Monte Carlo Newton-Raphson (MCNR) method. Inferences regarding the parameters are made by applying Louis's method and the delta method. Simulation studies were conducted to compare the proposed MCNR method with existing methods including the maximum likelihood (ML) method and the ad hoc approach of replacing the left-censored values with half of the detection limit (HDL). The results showed that the performance of the MCNR method is superior to ML and HDL with respect to the empirical standard error, as well as the coverage probability for the 95% confidence interval. The HDL method uses an incorrect imputation method, and the computation is constrained by the number of quadrature points; while the ML method also suffers from the constrain for the number of quadrature points, the MCNR method does not have this limitation and approximates the likelihood function better than the other methods. The improvement of the MCNR method is further illustrated with real-world data from a longitudinal study of local cervicovaginal HIV viral load and its effects on oncogenic HPV detection in HIV-positive women. Copyright © 2017 John Wiley & Sons, Ltd.

  14. Estimation of non-linear effective permeability of magnetic materials with fine structure

    International Nuclear Information System (INIS)

    Waki, H.; Igarashi, H.; Honma, T.

    2006-01-01

    This paper describes a homogenization method for magnetic materials with fine structure. In this method, the structures of the magnetic materials are assumed to be periodic, and the unit cell is defined. The effective permeability is determined on the basis of magnetic energy balance in the unit cell. This method can be applied not only for linear problems but also for non-linear ones. In this paper, estimation of the effective permeability of non-linear magnetic materials by using the homogenization method is described in detail, and then the validity for the non-liner problems is tested for two-dimensional problems. It is shown that this homogenization method gives accurate non-linear effective permeability

  15. Mathematical modeling of the crack growth in linear elastic isotropic materials by conventional fracture mechanics approaches and by molecular dynamics method: crack propagation direction angle under mixed mode loading

    Science.gov (United States)

    Stepanova, Larisa; Bronnikov, Sergej

    2018-03-01

    The crack growth directional angles in the isotropic linear elastic plane with the central crack under mixed-mode loading conditions for the full range of the mixity parameter are found. Two fracture criteria of traditional linear fracture mechanics (maximum tangential stress and minimum strain energy density criteria) are used. Atomistic simulations of the central crack growth process in an infinite plane medium under mixed-mode loading using Large-scale Molecular Massively Parallel Simulator (LAMMPS), a classical molecular dynamics code, are performed. The inter-atomic potential used in this investigation is Embedded Atom Method (EAM) potential. The plane specimens with initial central crack were subjected to Mixed-Mode loadings. The simulation cell contains 400000 atoms. The crack propagation direction angles under different values of the mixity parameter in a wide range of values from pure tensile loading to pure shear loading in a wide diapason of temperatures (from 0.1 К to 800 К) are obtained and analyzed. It is shown that the crack propagation direction angles obtained by molecular dynamics method coincide with the crack propagation direction angles given by the multi-parameter fracture criteria based on the strain energy density and the multi-parameter description of the crack-tip fields.

  16. Mixing time effects on the dispersion performance of adhesive mixtures for inhalation.

    Directory of Open Access Journals (Sweden)

    Floris Grasmeijer

    Full Text Available This paper deals with the effects of mixing time on the homogeneity and dispersion performance of adhesive mixtures for inhalation. Interactions between these effects and the carrier size fraction, the type of drug and the inhalation flow rate were studied. Furthermore, it was examined whether or not changes in the dispersion performance as a result of prolonged mixing can be explained with a balance of three processes that occur during mixing, knowing drug redistribution over the lactose carrier; (de- agglomeration of the drug (and fine lactose particles; and compression of the drug particles onto the carrier surface. For this purpose, mixtures containing salmeterol xinafoate or fluticasone propionate were mixed for different periods of time with a fine or coarse crystalline lactose carrier in a Turbula mixer. Drug detachment experiments were performed using a classifier based inhaler at different flow rates. Scanning electron microscopy and laser diffraction techniques were used to measure drug distribution and agglomeration, whereas changes in the apparent solubility were measured as a means to monitor the degree of mechanical stress imparted on the drug particles. No clear trend between mixing time and content uniformity was observed. Quantitative and qualitative interactions between the effect of mixing time on drug detachment and the type of drug, the carrier size fraction and the flow rate were measured, which could be explained with the three processes mentioned. Generally, prolonged mixing caused drug detachment to decrease, with the strongest decline occurring in the first 120 minutes of mixing. For the most cohesive drug (salmeterol and the coarse carrier, agglomerate formation seemed to dominate the overall effect of mixing time at a low inhalation flow rate, causing drug detachment to increase with prolonged mixing. The optimal mixing time will thus depend on the formulation purpose and the choice for other, interacting variables.

  17. Mixing Time Effects on the Dispersion Performance of Adhesive Mixtures for Inhalation

    Science.gov (United States)

    Grasmeijer, Floris; Hagedoorn, Paul; Frijlink, Henderik W.; de Boer, H. Anne

    2013-01-01

    This paper deals with the effects of mixing time on the homogeneity and dispersion performance of adhesive mixtures for inhalation. Interactions between these effects and the carrier size fraction, the type of drug and the inhalation flow rate were studied. Furthermore, it was examined whether or not changes in the dispersion performance as a result of prolonged mixing can be explained with a balance of three processes that occur during mixing, knowing drug redistribution over the lactose carrier; (de-) agglomeration of the drug (and fine lactose) particles; and compression of the drug particles onto the carrier surface. For this purpose, mixtures containing salmeterol xinafoate or fluticasone propionate were mixed for different periods of time with a fine or coarse crystalline lactose carrier in a Turbula mixer. Drug detachment experiments were performed using a classifier based inhaler at different flow rates. Scanning electron microscopy and laser diffraction techniques were used to measure drug distribution and agglomeration, whereas changes in the apparent solubility were measured as a means to monitor the degree of mechanical stress imparted on the drug particles. No clear trend between mixing time and content uniformity was observed. Quantitative and qualitative interactions between the effect of mixing time on drug detachment and the type of drug, the carrier size fraction and the flow rate were measured, which could be explained with the three processes mentioned. Generally, prolonged mixing caused drug detachment to decrease, with the strongest decline occurring in the first 120 minutes of mixing. For the most cohesive drug (salmeterol) and the coarse carrier, agglomerate formation seemed to dominate the overall effect of mixing time at a low inhalation flow rate, causing drug detachment to increase with prolonged mixing. The optimal mixing time will thus depend on the formulation purpose and the choice for other, interacting variables. PMID:23844256

  18. Charge state distribution studies of pure and oxygen mixed krypton ECR plasma - signature of isotope anomaly and gas mixing effect.

    Science.gov (United States)

    Kumar, Pravin; Mal, Kedar; Rodrigues, G

    2016-11-01

    We report the charge state distributions of the pure, 25% and 50% oxygen mixed krypton plasma to shed more light on the understanding of the gas mixing and the isotope anomaly [A. G. Drentje, Rev. Sci. Instrum. 63 (1992) 2875 and Y Kawai, D Meyer, A Nadzeyka, U Wolters and K Wiesemann, Plasma Sources Sci. Technol. 10 (2001) 451] in the electron cyclotron resonance (ECR) plasmas. The krypton plasma was produced using a 10 GHz all-permanent-magnet ECR ion source. The intensities of the highly abundant four isotopes, viz. 82 Kr (~11.58%), 83 Kr (~11.49%), 84 Kr (~57%) and 86 Kr (17.3%) up to ~ +14 charge state have been measured by extracting the ions from the plasma and analysing them in the mass and the energy using a large acceptance analyzer-cum-switching dipole magnet. The influence of the oxygen gas mixing on the isotopic krypton ion intensities is clearly evidenced beyond +9 charge state. With and without oxygen mixing, the charge state distribution of the krypton ECR plasma shows the isotope anomaly with unusual trends. The anomaly in the intensities of the isotopes having quite closer natural abundance, viz. 82 Kr, 86 Kr and 83 Kr, 86 Kr is prominent, whereas the intensity ratio of 86 Kr to 84 Kr shows a weak signature of it. The isotope anomaly tends to disappear with increasing oxygen mixing in the plasma. The observed trends in the intensities of the krypton isotopes do not follow the prediction of linear Landau wave damping in the plasma. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  19. Mixed linear-nonlinear fault slip inversion: Bayesian inference of model, weighting, and smoothing parameters

    Science.gov (United States)

    Fukuda, J.; Johnson, K. M.

    2009-12-01

    Studies utilizing inversions of geodetic data for the spatial distribution of coseismic slip on faults typically present the result as a single fault plane and slip distribution. Commonly the geometry of the fault plane is assumed to be known a priori and the data are inverted for slip. However, sometimes there is not strong a priori information on the geometry of the fault that produced the earthquake and the data is not always strong enough to completely resolve the fault geometry. We develop a method to solve for the full posterior probability distribution of fault slip and fault geometry parameters in a Bayesian framework using Monte Carlo methods. The slip inversion problem is particularly challenging because it often involves multiple data sets with unknown relative weights (e.g. InSAR, GPS), model parameters that are related linearly (slip) and nonlinearly (fault geometry) through the theoretical model to surface observations, prior information on model parameters, and a regularization prior to stabilize the inversion. We present the theoretical framework and solution method for a Bayesian inversion that can handle all of these aspects of the problem. The method handles the mixed linear/nonlinear nature of the problem through combination of both analytical least-squares solutions and Monte Carlo methods. We first illustrate and validate the inversion scheme using synthetic data sets. We then apply the method to inversion of geodetic data from the 2003 M6.6 San Simeon, California earthquake. We show that the uncertainty in strike and dip of the fault plane is over 20 degrees. We characterize the uncertainty in the slip estimate with a volume around the mean fault solution in which the slip most likely occurred. Slip likely occurred somewhere in a volume that extends 5-10 km in either direction normal to the fault plane. We implement slip inversions with both traditional, kinematic smoothing constraints on slip and a simple physical condition of uniform stress

  20. Beam-beam instability driven by wakefield effects in linear colliders

    CERN Document Server

    Brinkmann, R; Schulte, Daniel

    2002-01-01

    The vertical beam profile distortions induced by wakefield effects in linear colliders (the so-called ``banana effect'') generate a beam-beam instability at the collision point when the vertical disruption parameter is large. We illustrate this effect in the case of the TESLA linear collider project. We specify the tolerance on the associated emittance growth, which translates into tolerances on injection jitter and, for a given tuning procedure, on structure misalignments. We look for possible cures based on fast orbit correction at the interaction point and using a fast luminosity monitor.

  1. Effective connectivity between superior temporal gyrus and Heschl's gyrus during white noise listening: linear versus non-linear models.

    Science.gov (United States)

    Hamid, Ka; Yusoff, An; Rahman, Mza; Mohamad, M; Hamid, Aia

    2012-04-01

    This fMRI study is about modelling the effective connectivity between Heschl's gyrus (HG) and the superior temporal gyrus (STG) in human primary auditory cortices. MATERIALS #ENTITYSTARTX00026; Ten healthy male participants were required to listen to white noise stimuli during functional magnetic resonance imaging (fMRI) scans. Statistical parametric mapping (SPM) was used to generate individual and group brain activation maps. For input region determination, two intrinsic connectivity models comprising bilateral HG and STG were constructed using dynamic causal modelling (DCM). The models were estimated and inferred using DCM while Bayesian Model Selection (BMS) for group studies was used for model comparison and selection. Based on the winning model, six linear and six non-linear causal models were derived and were again estimated, inferred, and compared to obtain a model that best represents the effective connectivity between HG and the STG, balancing accuracy and complexity. Group results indicated significant asymmetrical activation (p(uncorr) Model comparison results showed strong evidence of STG as the input centre. The winning model is preferred by 6 out of 10 participants. The results were supported by BMS results for group studies with the expected posterior probability, r = 0.7830 and exceedance probability, ϕ = 0.9823. One-sample t-tests performed on connection values obtained from the winning model indicated that the valid connections for the winning model are the unidirectional parallel connections from STG to bilateral HG (p model comparison between linear and non-linear models using BMS prefers non-linear connection (r = 0.9160, ϕ = 1.000) from which the connectivity between STG and the ipsi- and contralateral HG is gated by the activity in STG itself. We are able to demonstrate that the effective connectivity between HG and STG while listening to white noise for the respective participants can be explained by a non-linear dynamic causal model with

  2. Effect of strong-focusing field distortions on particle motion in a linear accelerator

    International Nuclear Information System (INIS)

    Bondarev, B.I.; Durkin, A.P.; Solov'ev, L.Yu.

    1979-01-01

    The increased sensitivity of quadrupole focusing channel used in the highenergetic part of the linear accelerator makes it necessary to pay serious attention to the effect of various distortions of focusing fields on the transverse motion of the beam. The distortions may cause the inadmissible losses of particles in the accelerator. To achieve this aim the main equation of disturbed motion of particles in the linear accelerator, obtained by analogy with the cyclic accelerator theory is presented. The investigation of the solutions of this equation has permitted to obtain the analytical formulas for the estimation of the beam size increase under the effect of focusing field distortions of various types, such as structural non-linearity, gradient errors, random non-linearity, channel axis deformation. While studying the effect of structural non-linearity considered are the resonance effects and obtained are the relations describing the maximum beam size increase in the channel of the linear accelerator in the presence and in the absence of the resonance

  3. Mixed integer linear programming for maximum-parsimony phylogeny inference.

    Science.gov (United States)

    Sridhar, Srinath; Lam, Fumei; Blelloch, Guy E; Ravi, R; Schwartz, Russell

    2008-01-01

    Reconstruction of phylogenetic trees is a fundamental problem in computational biology. While excellent heuristic methods are available for many variants of this problem, new advances in phylogeny inference will be required if we are to be able to continue to make effective use of the rapidly growing stores of variation data now being gathered. In this paper, we present two integer linear programming (ILP) formulations to find the most parsimonious phylogenetic tree from a set of binary variation data. One method uses a flow-based formulation that can produce exponential numbers of variables and constraints in the worst case. The method has, however, proven extremely efficient in practice on datasets that are well beyond the reach of the available provably efficient methods, solving several large mtDNA and Y-chromosome instances within a few seconds and giving provably optimal results in times competitive with fast heuristics than cannot guarantee optimality. An alternative formulation establishes that the problem can be solved with a polynomial-sized ILP. We further present a web server developed based on the exponential-sized ILP that performs fast maximum parsimony inferences and serves as a front end to a database of precomputed phylogenies spanning the human genome.

  4. Minimising negative externalities cost using 0-1 mixed integer linear programming model in e-commerce environment

    Directory of Open Access Journals (Sweden)

    Akyene Tetteh

    2017-04-01

    Full Text Available Background: Although the Internet boosts business profitability, without certain activities like efficient transportation, scheduling, products ordered via the Internet may reach their destination very late. The environmental problems (vehicle part disposal, carbon monoxide [CO], nitrogen oxide [NOx] and hydrocarbons [HC] associated with transportation are mostly not accounted for by industries. Objectives: The main objective of this article is to minimising negative externalities cost in e-commerce environments. Method: The 0-1 mixed integer linear programming (0-1 MILP model was used to model the problem statement. The result was further analysed using the externality percentage impact factor (EPIF. Results: The simulation results suggest that (1 The mode of ordering refined petroleum products does not impact on the cost of distribution, (2 an increase in private cost is directly proportional to the externality cost, (3 externality cost is largely controlled by the government and number of vehicles used in the distribution and this is in no way influenced by the mode of request (i.e. Internet or otherwise and (4 externality cost may be reduce by using more ecofriendly fuel system.

  5. Using mixed methods effectively in prevention science: designs, procedures, and examples.

    Science.gov (United States)

    Zhang, Wanqing; Watanabe-Galloway, Shinobu

    2014-10-01

    There is growing interest in using a combination of quantitative and qualitative methods to generate evidence about the effectiveness of health prevention, services, and intervention programs. With the emerging importance of mixed methods research across the social and health sciences, there has been an increased recognition of the value of using mixed methods for addressing research questions in different disciplines. We illustrate the mixed methods approach in prevention research, showing design procedures used in several published research articles. In this paper, we focused on two commonly used mixed methods designs: concurrent and sequential mixed methods designs. We discuss the types of mixed methods designs, the reasons for, and advantages of using a particular type of design, and the procedures of qualitative and quantitative data collection and integration. The studies reviewed in this paper show that the essence of qualitative research is to explore complex dynamic phenomena in prevention science, and the advantage of using mixed methods is that quantitative data can yield generalizable results and qualitative data can provide extensive insights. However, the emphasis of methodological rigor in a mixed methods application also requires considerable expertise in both qualitative and quantitative methods. Besides the necessary skills and effective interdisciplinary collaboration, this combined approach also requires an open-mindedness and reflection from the involved researchers.

  6. Ion beam mixing of titanium films on stainless steel

    International Nuclear Information System (INIS)

    Bolse, W.; Weber, T.

    1990-01-01

    The ion mixing of Ti-steel bilayers with N + , Ar + , Ti + , Kr + and Xe + ions was investigated by means of Rutherford backscattering spectroscopy (RBS). The mixing rates exhibit a linear scaling with the deposited damage energy F D . No correlation between the properties of the mixing ion and the mixing efficiency was found. The results are compared with the predictions of ballistic and thermal-spike models. (orig.)

  7. Comparing performance of standard and iterative linear unmixing methods for hyperspectral signatures

    Science.gov (United States)

    Gault, Travis R.; Jansen, Melissa E.; DeCoster, Mallory E.; Jansing, E. David; Rodriguez, Benjamin M.

    2016-05-01

    Linear unmixing is a method of decomposing a mixed signature to determine the component materials that are present in sensor's field of view, along with the abundances at which they occur. Linear unmixing assumes that energy from the materials in the field of view is mixed in a linear fashion across the spectrum of interest. Traditional unmixing methods can take advantage of adjacent pixels in the decomposition algorithm, but is not the case for point sensors. This paper explores several iterative and non-iterative methods for linear unmixing, and examines their effectiveness at identifying the individual signatures that make up simulated single pixel mixed signatures, along with their corresponding abundances. The major hurdle addressed in the proposed method is that no neighboring pixel information is available for the spectral signature of interest. Testing is performed using two collections of spectral signatures from the Johns Hopkins University Applied Physics Laboratory's Signatures Database software (SigDB): a hand-selected small dataset of 25 distinct signatures from a larger dataset of approximately 1600 pure visible/near-infrared/short-wave-infrared (VIS/NIR/SWIR) spectra. Simulated spectra are created with three and four material mixtures randomly drawn from a dataset originating from SigDB, where the abundance of one material is swept in 10% increments from 10% to 90%with the abundances of the other materials equally divided amongst the remainder. For the smaller dataset of 25 signatures, all combinations of three or four materials are used to create simulated spectra, from which the accuracy of materials returned, as well as the correctness of the abundances, is compared to the inputs. The experiment is expanded to include the signatures from the larger dataset of almost 1600 signatures evaluated using a Monte Carlo scheme with 5000 draws of three or four materials to create the simulated mixed signatures. The spectral similarity of the inputs to the

  8. Rheologic properties of fresh cement mixes for repository sealing applications: effects of superplasticizers, mixing procedures, and time

    International Nuclear Information System (INIS)

    Roy, D.M.; Asaga, K.

    1982-09-01

    As part of the design of optimally durable, hardened cementitious plugging materials for repository borheole plugging, shaft and tunnel sealing, detailed studies of rheological properties have been made. The effects of mixing procedures upon measured rheological properties of fresh cement mixes with and without superplasticizing admixtures condensates of sulfonated naphthalene- and melamine-formaldehyde have been investigated. Coaxial cylindrical viscometer measurements were made, recording shear stress-shear rate relationships and defining yield stress and plastic viscosity. In the absence of admixture, yield stress and plastic viscosity decreased substantially with increasing intensity of mixing, which caused a breakdown of particulate aggregates. However, with admixture present, the rheological properties of already well-dispersed mixes did not change significantly with increasingly intense mixing. The changes of the viscometric functions with time were investigated, and were related to admixture type and concentration, cement type, and volume concentration of cement. The mechanisms of action of the superplasticizers and their use in generating reliable workable low water/cement ratio mixes are discussed. 36 figures, 3 tables

  9. Effect of particle size on mixing degree in dispensation.

    Science.gov (United States)

    Nakamura, Hitoshi; Yanagihara, Yoshitsugu; Sekiguchi, Hiroko; Ohtani, Michiteru; Kariya, Satoru; Uchino, Katsuyoshi; Suzuki, Hiroshi; Iga, Tatsuji

    2004-03-01

    By using lactose colored with erythrocin, we examined the effect of particle size on mixing degree during the preparation of triturations with a mortar and pestle. We used powders with different distributions of particle sizes, i.e., powder that passed through 32-mesh but was trapped on a 42-mesh sieve (32/42-mesh powder), powder that passed through a 42-mesh sieve but was trapped on a 60-mesh sieve (42/60-mesh powder), powder that passed through a 60-mesh sieve but was trapped on a 100-mesh sieve (60/100-mesh powder), and powder that passes through a 100-mesh sieve (> 100-mesh powder). The mixing degree of colored powder and non-colored powder whose distribution of particle sizes was the same as that of the colored powder was excellent. The coefficient of variation (CV) value of the mixing degree was 6.08% after 40 rotations when colored powder was mixed with non-colored powder that both passed through a 100-mesh sieve. The CV value of the mixing degree was low in the case of mixing of colored and non-colored powders with different particle size distributions. After mixing, about 50% of 42/60-mesh powder had become smaller particles, whereas the distribution of particle sizes was not influenced by the mixing of 60/100-mesh powder. It was suggested that the mixing degree is affected by distribution of particle sizes. It may be important to determine the mixing degrees for drugs with narrow therapeutic ranges.

  10. Anisotropic p-f mixing mechanism explaining anomalous magnetic properties in Ce monopnictides

    International Nuclear Information System (INIS)

    Takahashi, H.; Kasuya, T.

    1985-01-01

    The indirect f-f-interaction derived from fourth-order perturbation theory with respect to the p-f mixing is calculated using the valence bands obtained by the APW band calculations. The type of the f-f-interactions is described as the coupling through the symmetry exchange under the cubic crystal field, which cannot be written as a simple bilinear type of 4f spin operator. It is necessary to consider the short-range-ordering effect as well as the non-linear effect of the p-f mixing to explain the fact that a type-I antiferromagnetic ordering is established by the second-order transition in CeBi. (author)

  11. Linear and non-linear optics of condensed matter

    International Nuclear Information System (INIS)

    McLean, T.P.

    1977-01-01

    Part I - Linear optics: 1. General introduction. 2. Frequency dependence of epsilon(ω, k vector). 3. Wave-vector dependence of epsilon(ω, k vector). 4. Tensor character of epsilon(ω, k vector). Part II - Non-linear optics: 5. Introduction. 6. A classical theory of non-linear response in one dimension. 7. The generalization to three dimensions. 8. General properties of the polarizability tensors. 9. The phase-matching condition. 10. Propagation in a non-linear dielectric. 11. Second harmonic generation. 12. Coupling of three waves. 13. Materials and their non-linearities. 14. Processes involving energy exchange with the medium. 15. Two-photon absorption. 16. Stimulated Raman effect. 17. Electro-optic effects. 18. Limitations of the approach presented here. (author)

  12. Effects of Temperature and Axial Strain on Four-Wave Mixing Parametric Frequencies in Microstructured Optical Fibers Pumped in the Normal Dispersion Regime

    Directory of Open Access Journals (Sweden)

    Javier Abreu-Afonso

    2014-10-01

    Full Text Available A study of the effect of temperature and axial strain on the parametric wavelengths produced by four-wave mixing in microstructured optical fibers is presented. Degenerate four-wave mixing was generated in the fibers by pumping at normal dispersion, near the zero-dispersion wavelength, causing the appearance of two widely-spaced four-wave mixing spectral bands. Temperature changes, and/or axial strain applied to the fiber, affects the dispersion characteristics of the fiber, which can result in the shift of the parametric wavelengths. We show that the increase of temperature causes the signal and idler wavelengths to shift linearly towards shorter and longer wavelengths, respectively. For the specific fiber of the experiment, the band shift at rates ­–0.04 nm/ºC and 0.3 nm/ºC, respectively. Strain causes the parametric bands to shift in the opposite way. The signal band shifted 2.8 nm/me and the idler -5.4 nm/me. Experimental observations are backed by numerical simulations.

  13. Density-ratio effects on buoyancy-driven variable-density turbulent mixing

    Science.gov (United States)

    Aslangil, Denis; Livescu, Daniel; Banerjee, Arindam

    2017-11-01

    Density-ratio effects on the turbulent mixing of two incompressible, miscible fluids with different densities subject to constant acceleration are studied by means of high-resolution Direct Numerical Simulations. In a triply periodic domain, turbulence is generated by stirring in response to the differential buoyancy forces within the flow. Later, as the fluids become molecularly mixed, dissipation starts to overcome turbulence generation by bouyancy. Thus, the flow evolution includes both turbulence growth and decay, and it displays features present in the core region of the mixing layer of the Rayleigh-Taylor as well as Richtmyer-Meshkov instabilities. We extend the previous studies by investigating a broad range of density-ratio, from 1-14.4:1, corresponding to Atwood numbers of 0.05-0.87. Here, we focus on the Atwood number dependence of mixing-efficiency, that is defined based on the energy-conversion ratios from potential energy to total and turbulent kinetic energies, the decay characteristics of buoyancy-assisted variable-density homogeneous turbulence, and the effects of high density-ratios on the turbulence structure and mixing process. Authors acknowledge financial support from DOE-SSAA (DE-NA0003195) and NSF CAREER (#1453056) awards.

  14. Constructing quantum dynamics from mixed quantum-classical descriptions

    International Nuclear Information System (INIS)

    Barsegov, V.; Rossky, P.J.

    2004-01-01

    The influence of quantum bath effects on the dynamics of a quantum two-level system linearly coupled to a harmonic bath is studied when the coupling is both diagonal and off-diagonal. It is shown that the pure dephasing kernel and the non-adiabatic quantum transition rate between Born-Oppenheimer states of the subsystem can be decomposed into a contribution from thermally excited bath modes plus a zero point energy contribution. This quantum rate can be modewise factorized exactly into a product of a mixed quantum subsystem-classical bath transition rate and a quantum correction factor. This factor determines dynamics of quantum bath correlations. Quantum bath corrections to both the transition rate and the pure dephasing kernel are shown to be readily evaluated via a mixed quantum-classical simulation. Hence, quantum dynamics can be recovered from a mixed quantum-classical counterpart by incorporating the missing quantum bath corrections. Within a mixed quantum-classical framework, a simple approach for evaluating quantum bath corrections in calculation of the non-adiabatic transition rate is presented

  15. Comparison of linear, skewed-linear, and proportional hazard models for the analysis of lambing interval in Ripollesa ewes.

    Science.gov (United States)

    Casellas, J; Bach, R

    2012-06-01

    Lambing interval is a relevant reproductive indicator for sheep populations under continuous mating systems, although there is a shortage of selection programs accounting for this trait in the sheep industry. Both the historical assumption of small genetic background and its unorthodox distribution pattern have limited its implementation as a breeding objective. In this manuscript, statistical performances of 3 alternative parametrizations [i.e., symmetric Gaussian mixed linear (GML) model, skew-Gaussian mixed linear (SGML) model, and piecewise Weibull proportional hazard (PWPH) model] have been compared to elucidate the preferred methodology to handle lambing interval data. More specifically, flock-by-flock analyses were performed on 31,986 lambing interval records (257.3 ± 0.2 d) from 6 purebred Ripollesa flocks. Model performances were compared in terms of deviance information criterion (DIC) and Bayes factor (BF). For all flocks, PWPH models were clearly preferred; they generated a reduction of 1,900 or more DIC units and provided BF estimates larger than 100 (i.e., PWPH models against linear models). These differences were reduced when comparing PWPH models with different number of change points for the baseline hazard function. In 4 flocks, only 2 change points were required to minimize the DIC, whereas 4 and 6 change points were needed for the 2 remaining flocks. These differences demonstrated a remarkable degree of heterogeneity across sheep flocks that must be properly accounted for in genetic evaluation models to avoid statistical biases and suboptimal genetic trends. Within this context, all 6 Ripollesa flocks revealed substantial genetic background for lambing interval with heritabilities ranging between 0.13 and 0.19. This study provides the first evidence of the suitability of PWPH models for lambing interval analysis, clearly discarding previous parametrizations focused on mixed linear models.

  16. Design of offline measuring system for radiation damage effects on linear CCD

    International Nuclear Information System (INIS)

    Zhang Yong; Tang Benqi; Xiao Zhigang; Wang Zujun; Huang Fang; Huang Shaoyan

    2004-01-01

    The paper discusses the hardware design of offline measuring system for radiation damage effects on linear CCD. Some credible results were achieved by using this system. The test results indicate that the system is available for the study of the radiation damage effects on linear CCD. (authors)

  17. Linear signal noise summer accurately determines and controls S/N ratio

    Science.gov (United States)

    Sundry, J. L.

    1966-01-01

    Linear signal noise summer precisely controls the relative power levels of signal and noise, and mixes them linearly in accurately known ratios. The S/N ratio accuracy and stability are greatly improved by this technique and are attained simultaneously.

  18. A mixed integer linear programming approach for optimal DER portfolio, sizing, and placement in multi-energy microgrids

    International Nuclear Information System (INIS)

    Mashayekh, Salman; Stadler, Michael; Cardoso, Gonçalo; Heleno, Miguel

    2017-01-01

    Highlights: • This paper presents a MILP model for optimal design of multi-energy microgrids. • Our microgrid design includes optimal technology portfolio, placement, and operation. • Our model includes microgrid electrical power flow and heat transfer equations. • The case study shows advantages of our model over aggregate single-node approaches. • The case study shows the accuracy of the integrated linearized power flow model. - Abstract: Optimal microgrid design is a challenging problem, especially for multi-energy microgrids with electricity, heating, and cooling loads as well as sources, and multiple energy carriers. To address this problem, this paper presents an optimization model formulated as a mixed-integer linear program, which determines the optimal technology portfolio, the optimal technology placement, and the associated optimal dispatch, in a microgrid with multiple energy types. The developed model uses a multi-node modeling approach (as opposed to an aggregate single-node approach) that includes electrical power flow and heat flow equations, and hence, offers the ability to perform optimal siting considering physical and operational constraints of electrical and heating/cooling networks. The new model is founded on the existing optimization model DER-CAM, a state-of-the-art decision support tool for microgrid planning and design. The results of a case study that compares single-node vs. multi-node optimal design for an example microgrid show the importance of multi-node modeling. It has been shown that single-node approaches are not only incapable of optimal DER placement, but may also result in sub-optimal DER portfolio, as well as underestimation of investment costs.

  19. Modeling Dynamic Effects of the Marketing Mix on Market Shares

    NARCIS (Netherlands)

    D. Fok (Dennis); R. Paap (Richard); Ph.H.B.F. Franses (Philip Hans)

    2003-01-01

    textabstractTo comprehend the competitive structure of a market, it is important to understand the short-run and long-run effects of the marketing mix on market shares. A useful model to link market shares with marketing-mix variables, like price and promotion, is the market share attraction model.

  20. A Cost-effective Method for Resolution Increase of the Twostage Piecewise Linear ADC Used for Sensor Linearization

    Directory of Open Access Journals (Sweden)

    Jovanović Jelena

    2016-02-01

    Full Text Available A cost-effective method for resolution increase of a two-stage piecewise linear analog-to-digital converter used for sensor linearization is proposed in this paper. In both conversion stages flash analog-to-digital converters are employed. Resolution increase by one bit per conversion stage is performed by introducing one additional comparator in front of each of two flash analog-to-digital converters, while the converters’ resolutions remain the same. As a result, the number of employed comparators, as well as the circuit complexity and the power consumption originating from employed comparators are for almost 50 % lower in comparison to the same parameters referring to the linearization circuit of the conventional design and of the same resolution. Since the number of employed comparators is significantly reduced according to the proposed method, special modifications of the linearization circuit are needed in order to properly adjust reference voltages of employed comparators.

  1. Two-dimensional linear and nonlinear Talbot effect from rogue waves.

    Science.gov (United States)

    Zhang, Yiqi; Belić, Milivoj R; Petrović, Milan S; Zheng, Huaibin; Chen, Haixia; Li, Changbiao; Lu, Keqing; Zhang, Yanpeng

    2015-03-01

    We introduce two-dimensional (2D) linear and nonlinear Talbot effects. They are produced by propagating periodic 2D diffraction patterns and can be visualized as 3D stacks of Talbot carpets. The nonlinear Talbot effect originates from 2D rogue waves and forms in a bulk 3D nonlinear medium. The recurrences of an input rogue wave are observed at the Talbot length and at the half-Talbot length, with a π phase shift; no other recurrences are observed. Differing from the nonlinear Talbot effect, the linear effect displays the usual fractional Talbot images as well. We also find that the smaller the period of incident rogue waves, the shorter the Talbot length. Increasing the beam intensity increases the Talbot length, but above a threshold this leads to a catastrophic self-focusing phenomenon which destroys the effect. We also find that the Talbot recurrence can be viewed as a self-Fourier transform of the initial periodic beam that is automatically performed during propagation. In particular, linear Talbot effect can be viewed as a fractional self-Fourier transform, whereas the nonlinear Talbot effect can be viewed as the regular self-Fourier transform. Numerical simulations demonstrate that the rogue-wave initial condition is sufficient but not necessary for the observation of the effect. It may also be observed from other periodic inputs, provided they are set on a finite background. The 2D effect may find utility in the production of 3D photonic crystals.

  2. Mixed alkali effect in glasses containing MnO2

    International Nuclear Information System (INIS)

    Reddy, M. Sudhakara; Rajiv, Asha; Veeranna Gowda, V. C.; Chakradhar, R. P. S.; Reddy, C. Narayana

    2013-01-01

    Glass systems of the composition xLi 2 O−(25−x)K 2 O−70(0.4ZnO+0.6P 2 O 5 )+5MnO 2 (x = 4,8,12,16 and 20 mol %) have been prepared by melt quenching technique. The thermal and mechanical properties of the glasses have been evaluated as a function of mixed alkali content. Glass transition temperature and Vickers’s hardness of the glasses show a pronounced deviation from linearity at 12 mol%Li 2 O. Theoretically estimated elastic moduli of the glasses show small positive deviations from linearity. MAE in these properties has been attributed to the localized changes in the glass network. The absorption spectra of Mn 2+ ions in these glasses showed strong broad absorption band at 514 nm corresponding to the transition 6 A 1g (S)→ 4 T 1g (G), characteristic of manganese ions in octahedral symmetry. The fundamental absorption edge in UV region is used to study the optical transitions and electronic band structure. From UV absorption edge, optical band gap energies have been evaluated. Band gap energies of the glasses have exhibited MAE and shows minimum value for 12 mol%Li 2 O glass.

  3. Heats of Mixing Using an Isothermal Titration Calorimeter: Associated Thermal Effects

    Directory of Open Access Journals (Sweden)

    Fabiola Socorro

    2009-06-01

    Full Text Available The correct determination of the energy generated or absorbed in the sample cell of an Isothermal Titration Calorimeter (ITC requires a thorough analysis of the calorimetric signal. This means the identification and quantification of any thermal effect inherent to the working method. In this work, it is carried out a review on several thermal effects, studied by us in previous work, and which appear when an ITC is used for measuring the heats of mixing of liquids in a continuous mode. These effects are due to: (i the difference between the temperature of the injected liquid and the temperature of the mixture during the mixing process, (ii the increase of the liquid volume located in the mixing cell and (iii the stirring velocity. Besides, methods for the identification and quantification of the mentioned effects are suggested.

  4. Solar neutrinos and the MSW effect for three-neutrino mixing

    Science.gov (United States)

    Shi, X.; Schramm, David N.

    1991-01-01

    Researchers considered three-neutrino Mikheyev-Smirnov-Wolfenstein (MSW) mixing, assuming m sub 3 is much greater than m sub 2 is greater than m sub 1 as expected from theoretical consideration if neutrinos have mass. They calculated the corresponding mixing parameter space allowed by the Cl-37 and Kamiokande 2 experiments. They also calculated the expected depletion for the Ga-71 experiment. They explored a range of theoretical uncertainty due to possible astrophysical effects by varying the B-8 neutrino flux and redoing the MSW mixing calculation.

  5. Mixed noble gas effect on cut green peppers

    Science.gov (United States)

    Raymond, L. V.; Zhang, M.; Karangwa, E.; Chesereka, M. J.

    2013-01-01

    Increasing attempts at using gas which leads to hydrate formation as a preservative tool in fresh-cut fruits and vegetables have been reported. In this study, changes in some physical and biochemical properties of fresh-cut green peppers under compressed noble gas treatments were examined. Mixed argonkrypton and argon treatments were performed before cold storage at 5°C for 15 days. Mass loss and cell membrane permeability were found to be the lowest in mixed argon-krypton samples. Besides, a lower CO2 concentration and vitamin C loss were detected in gastreated samples compared to untreated samples (control). While the total phenol degradation was moderately reduced, the effect of the treatment on polyphenoloxidase activity was better at the beginning of the storage period. The minimum changes in quality observed in cut peppers resulted from both mixed and gas treatment alone.

  6. An Introduction to the Use of Linear Models with Correlated Data

    Directory of Open Access Journals (Sweden)

    Benoît Laplante

    2001-12-01

    conventional methods for estimating the variances of these estimates may yield biased results. These two problems are different, but they are related. This paper provides an introduction to the problems caused by correlated data and to possible solutions to these problems. First, we present the two problems and try to specify the relations between the two as clearly as possible. Second, we provide a critical presentation of random effects, mixed effects and hierarchical models that would help researchers to see their relevance in other kinds of linear models, particularly the so-called measurement models.

  7. Dispersion of the linear and nonlinear optical susceptibilities of the CuAl(S1−xSex)2 mixed chaclcopyrite compounds

    International Nuclear Information System (INIS)

    Reshak, A. H.; Brik, M. G.; Auluck, S.

    2014-01-01

    Based on the electronic band structure, we have calculated the dispersion of the linear and nonlinear optical susceptibilities for the mixed CuAl(S 1−x Se x ) 2 chaclcopyrite compounds with x = 0.0, 0.25, 0.5, 0.75, and 1.0. Calculations are performed within the Perdew-Becke-Ernzerhof general gradient approximation. The investigated compounds possess a direct band gap of about 2.2 eV (CuAlS 2 ), 1.9 eV (CuAl(S 0.75 Se 0.25 ) 2 ), 1.7 eV (CuAl(S 0.5 Se 0.5 ) 2 ), 1.5 eV (CuAl(S 0.25 Se 0.75 ) 2 ), and 1.4 eV (CuAlSe 2 ) which tuned to make them optically active for the optoelectronics and photovoltaic applications. These results confirm that substituting S by Se causes significant band gaps' reduction. The optical function's dispersion ε 2 xx (ω) and ε 2 zz (ω)/ε 2 xx (ω), ε 2 yy (ω), and ε 2 zz (ω) was calculated and discussed in detail. To demonstrate the effect of substituting S by Se on the complex second-order nonlinear optical susceptibility tensors, we performed detailed calculations for the complex second-order nonlinear optical susceptibility tensors, which show that the neat parents compounds CuAlS 2 and CuAlSe 2 exhibit | χ 123 (2) (−2ω;ω;ω) | as the dominant component, while the mixed alloys exhibit | χ 111 (2) (−2ω;ω;ω) | as the dominant component. The features of | χ 123 (2) (−2ω;ω;ω) | and | χ 111 (2) (−2ω;ω;ω) | spectra were analyzed on the basis of the absorptive part of the corresponding dielectric function ε 2 (ω) as a function of both ω/2 and ω.

  8. Effects of Physically Effective Neutral Detergent Fiber Content on Intake, Digestibility, and Chewing Activity in Fattening Heifer Fed Total Mixed Ration

    Directory of Open Access Journals (Sweden)

    Mi Rae Oh

    2016-12-01

    Full Text Available The objective of this study was to determine the effects of physically effective neutral detergent fiber (peNDF content in total mixed ration (TMR on dry matter intake, digestibility, and chewing activity in fattening Hanwoo (Bos taurus coreanae heifers. The experiment was designed as a replicated 3×3 Latin square using 12 heifers. Fattening heifers were offered one of three diets [high (T1, medium (T2, and low (T3 peNDF] obtained by different mixing times (3, 10, and 25 min for the same TMR feed. The peNDF content of TMR was determined by multiplying the proportion of dry matter retained by a 1.18 mm-screen in a Penn State Particle Separator by the dietary NDF content. The peNDF1.18 content was 30.36%, 29.20%, and 27.50% for the T1, T2, and T3 diets, respectively (p<0.05. Dry matter intake was not affected by peNDF content in TMR. Total weight gain in T1 group was significantly higher (p<0.05 than in T2 and T3 groups. However, weight gain did not differ between T2 and T3 groups. The feed conversion ratio decreased with an increase in the peNDF content (T1: 12.18, T2: 14.17, and T3: 14.01 g/g. An increase in the peNDF content of TMR was associated with a linear increase in the digestibility of dry matter, crude protein, crude fiber, neutral detergent fiber, and acid detergent fiber (p<0.05. Also, an increase in peNDF content of the TMR resulted in a linear increase in the number of chews in eating and ruminating (p<0.05, and consequently in the number of total chews (p<0.05. These results indicate that peNDF content affects digestibility and chewing activity. Consequently, the peNDF content of TMR should be considered for improving feed efficiency, digestibility, body weight gain, and performance in fattening heifers.

  9. Z-Z' mixing effects in W±-boson pair production processes at hadron and lepton high-energy colliders

    International Nuclear Information System (INIS)

    Bobovnikov, I.D.; Pankov, A.A.

    2016-01-01

    The potential to search for Z−Z' mixing in the W ± -boson pair production processes in proton-proton and electron-positron collisions at the Large Hadron Collider (LHC) and International Linear Collider (ILC), respectively, was studied. We found that the W ± -boson pair production processes are very sensitive to Z−Z' mixing angle, and their measurements at current and future collider experiments allow one to improve the present limits on Z−Z' mixing for the investigated models with extended gauge sector. The LHC at nominal energy and integrated luminosity, 14 TeV and 100 fb -1 , can provide a much more precise information on Z-Z' mixing and Z 2 mass, M 2 , with respect to those which can be obtained at the lepton collider ILC (0.5 TeV)

  10. Performance evaluation of coherent WDM PS-QPSK (HEXA) accounting for non-linear fiber propagation effects.

    Science.gov (United States)

    Poggiolini, P; Bosco, G; Carena, A; Curri, V; Forghieri, F

    2010-05-24

    Coherent-detection (CoD) permits to fully exploit the four-dimensional (4D) signal space consisting of the in-phase and quadrature components of the two fiber polarizations. A well-known and successful format exploiting such 4D space is Polarization-multiplexed QPSK (PM-QPSK). Recently, new signal constellations specifically designed and optimized in 4D space have been proposed, among which polarization-switched QPSK (PS-QPSK), consisting of a 8-point constellation at the vertices of a 4D polychoron called hexadecachoron. We call it HEXA because of its geometrical features and to avoid acronym mix-up with PM-QPSK, as well as with other similar acronyms. In this paper we investigate the performance of HEXA in direct comparison with PM-QPSK, addressing non-linear propagation over realistic links made up of 20 spans of either standard single mode fiber (SSMF) or non-zero dispersion-shifted fiber (NZDSF). We show that HEXA not only confirms its theoretical sensitivity advantage over PM-QPSK in back-to-back, but also shows a greater resilience to non-linear effects, allowing for substantially increased span loss margins. As a consequence, HEXA appears as an interesting option for dual-format transceivers capable to switch on-the-fly between PM-QPSK and HEXA when channel propagation degrades. It also appears as a possible direct competitor of PM-QPSK, especially over NZDSF fiber and uncompensated links.

  11. Linear and non-linear simulation of joints contact surface using ...

    African Journals Online (AJOL)

    The joint modelling including non-linear effects needs accurate and precise study of their behaviors. When joints are under the dynamic loading, micro, macro- slip happens in contact surface which is non-linear reason of the joint contact surface. The non-linear effects of joint contact surface on total behavior of structure are ...

  12. A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks.

    Science.gov (United States)

    Röhl, Annika; Bockmayr, Alexander

    2017-01-03

    Constraint-based analysis has become a widely used method to study metabolic networks. While some of the associated algorithms can be applied to genome-scale network reconstructions with several thousands of reactions, others are limited to small or medium-sized models. In 2015, Erdrich et al. introduced a method called NetworkReducer, which reduces large metabolic networks to smaller subnetworks, while preserving a set of biological requirements that can be specified by the user. Already in 2001, Burgard et al. developed a mixed-integer linear programming (MILP) approach for computing minimal reaction sets under a given growth requirement. Here we present an MILP approach for computing minimum subnetworks with the given properties. The minimality (with respect to the number of active reactions) is not guaranteed by NetworkReducer, while the method by Burgard et al. does not allow specifying the different biological requirements. Our procedure is about 5-10 times faster than NetworkReducer and can enumerate all minimum subnetworks in case there exist several ones. This allows identifying common reactions that are present in all subnetworks, and reactions appearing in alternative pathways. Applying complex analysis methods to genome-scale metabolic networks is often not possible in practice. Thus it may become necessary to reduce the size of the network while keeping important functionalities. We propose a MILP solution to this problem. Compared to previous work, our approach is more efficient and allows computing not only one, but even all minimum subnetworks satisfying the required properties.

  13. High linearity current communicating passive mixer employing a simple resistor bias

    International Nuclear Information System (INIS)

    Liu Rongjiang; Guo Guiliang; Yan Yuepeng

    2013-01-01

    A high linearity current communicating passive mixer including the mixing cell and transimpedance amplifier (TIA) is introduced. It employs the resistor in the TIA to reduce the source voltage and the gate voltage of the mixing cell. The optimum linearity and the maximum symmetric switching operation are obtained at the same time. The mixer is implemented in a 0.25 μm CMOS process. The test shows that it achieves an input third-order intercept point of 13.32 dBm, conversion gain of 5.52 dB, and a single sideband noise figure of 20 dB. (semiconductor integrated circuits)

  14. Ship track observations of a reduced shortwave aerosol indirect effect in mixed-phase clouds

    Science.gov (United States)

    Christensen, M. W.; Suzuki, K.; Zambri, B.; Stephens, G. L.

    2014-10-01

    Aerosol influences on clouds are a major source of uncertainty to our understanding of forced climate change. Increased aerosol can enhance solar reflection from clouds countering greenhouse gas warming. Recently, this indirect effect has been extended from water droplet clouds to other types including mixed-phase clouds. Aerosol effects on mixed-phase clouds are important because of their fundamental role on sea ice loss and polar climate change, but very little is known about aerosol effects on these clouds. Here we provide the first analysis of the effects of aerosol emitted from ship stacks into mixed-phase clouds. Satellite observations of solar reflection in numerous ship tracks reveal that cloud albedo increases 5 times more in liquid clouds when polluted and persist 2 h longer than in mixed-phase clouds. These results suggest that seeding mixed-phase clouds via shipping aerosol is unlikely to provide any significant counterbalancing solar radiative cooling effects in warming polar regions.

  15. Density effect on the mixing efficiency and flow modes in T-shaped micromixers

    Directory of Open Access Journals (Sweden)

    Lobasov Alexander

    2017-01-01

    Full Text Available Flow patterns and mixing of liquids with different densities in T-shaped micromixers are numerically investigated at Reynolds number range from 1 to 250. The density ratio of the mixing media varies from 1 to 2; its effect on the flow structure and the mixing is studied. The dependences of the mixing efficiency and the pressure difference in this mixer on the density ratio and the Reynolds number are obtained. It is shown that the density ratio has a considerable effect on the flow structure, especially before the transition from the symmetric to the asymmetric flow pattern.

  16. Dual and mixed nonsymmetric stress-based variational formulations for coupled thermoelastodynamics with second sound effect

    Science.gov (United States)

    Tóth, Balázs

    2018-03-01

    Some new dual and mixed variational formulations based on a priori nonsymmetric stresses will be developed for linearly coupled irreversible thermoelastodynamic problems associated with second sound effect according to the Lord-Shulman theory. Having introduced the entropy flux vector instead of the entropy field and defining the dissipation and the relaxation potential as the function of the entropy flux, a seven-field dual and mixed variational formulation will be derived from the complementary Biot-Hamilton-type variational principle, using the Lagrange multiplier method. The momentum-, the displacement- and the infinitesimal rotation vector, and the a priori nonsymmetric stress tensor, the temperature change, the entropy field and its flux vector are considered as the independent field variables of this formulation. In order to handle appropriately the six different groups of temporal prescriptions in the relaxed- and/or the strong form, two variational integrals will be incorporated into the seven-field functional. Then, eliminating the entropy from this formulation through the strong fulfillment of the constitutive relation for the temperature change with the use of the Legendre transformation between the enthalpy and Gibbs potential, a six-field dual and mixed action functional is obtained. As a further development, the elimination of the momentum- and the velocity vector from the six-field principle through the a priori satisfaction of the kinematic equation and the constitutive relation for the momentum vector leads to a five-field variational formulation. These principles are suitable for the transient analyses of the structures exposed to a thermal shock of short temporal domain or a large heat flux.

  17. Local genealogies in a linear mixed model for genome-wide association mapping in complex pedigreed populations.

    Directory of Open Access Journals (Sweden)

    Goutam Sahana

    Full Text Available INTRODUCTION: The state-of-the-art for dealing with multiple levels of relationship among the samples in genome-wide association studies (GWAS is unified mixed model analysis (MMA. This approach is very flexible, can be applied to both family-based and population-based samples, and can be extended to incorporate other effects in a straightforward and rigorous fashion. Here, we present a complementary approach, called 'GENMIX (genealogy based mixed model' which combines advantages from two powerful GWAS methods: genealogy-based haplotype grouping and MMA. SUBJECTS AND METHODS: We validated GENMIX using genotyping data of Danish Jersey cattle and simulated phenotype and compared to the MMA. We simulated scenarios for three levels of heritability (0.21, 0.34, and 0.64, seven levels of MAF (0.05, 0.10, 0.15, 0.20, 0.25, 0.35, and 0.45 and five levels of QTL effect (0.1, 0.2, 0.5, 0.7 and 1.0 in phenotypic standard deviation unit. Each of these 105 possible combinations (3 h(2 x 7 MAF x 5 effects of scenarios was replicated 25 times. RESULTS: GENMIX provides a better ranking of markers close to the causative locus' location. GENMIX outperformed MMA when the QTL effect was small and the MAF at the QTL was low. In scenarios where MAF was high or the QTL affecting the trait had a large effect both GENMIX and MMA performed similarly. CONCLUSION: In discovery studies, where high-ranking markers are identified and later examined in validation studies, we therefore expect GENMIX to enrich candidates brought to follow-up studies with true positives over false positives more than the MMA would.

  18. Faraday effect on stimulated Raman scattering in the linear region

    Science.gov (United States)

    Liu, Z. J.; Li, B.; Xiang, J.; Cao, L. H.; Zheng, C. Y.; Hao, L.

    2018-04-01

    The paper presents the effect of Faraday rotation on stimulated Raman scattering (SRS). When light propagates along the magnetic field upon plasma, Faraday rotation occurs. The rotation angle can be expressed as {{d}}θ /{{d}}{s}=2.93× {10}-4B\\tfrac{{n}e/{n}c}{\\sqrt{1-{n}e/{n}c}} {cm}}-1 approximately, where θ is the rotation angle and s is distance, n e is the electron density, n c is the critical density and B is magnetic field in unit of Gauss. Both the incident light and Raman light have Faraday effects. The angle between the polarization directions of incident light and Raman light changes with position. The driven force of electron plasma wave also reduces, and then SRS scattering level is reduced. Faraday rotation effect can increase the laser intensity threshold of Raman scattering, even if the magnetic field strength is small. The circularly polarized light incident case is also compared with that of the linearly polarized light incident. The Raman scattering level of linearly polarized light is much smaller than that of circularly polarized light in the magnetized plasma. The difference between linearly and circularly polarized lights is also discussed.

  19. Modeling Linguistic Variables With Regression Models: Addressing Non-Gaussian Distributions, Non-independent Observations, and Non-linear Predictors With Random Effects and Generalized Additive Models for Location, Scale, and Shape

    Directory of Open Access Journals (Sweden)

    Christophe Coupé

    2018-04-01

    Full Text Available As statistical approaches are getting increasingly used in linguistics, attention must be paid to the choice of methods and algorithms used. This is especially true since they require assumptions to be satisfied to provide valid results, and because scientific articles still often fall short of reporting whether such assumptions are met. Progress is being, however, made in various directions, one of them being the introduction of techniques able to model data that cannot be properly analyzed with simpler linear regression models. We report recent advances in statistical modeling in linguistics. We first describe linear mixed-effects regression models (LMM, which address grouping of observations, and generalized linear mixed-effects models (GLMM, which offer a family of distributions for the dependent variable. Generalized additive models (GAM are then introduced, which allow modeling non-linear parametric or non-parametric relationships between the dependent variable and the predictors. We then highlight the possibilities offered by generalized additive models for location, scale, and shape (GAMLSS. We explain how they make it possible to go beyond common distributions, such as Gaussian or Poisson, and offer the appropriate inferential framework to account for ‘difficult’ variables such as count data with strong overdispersion. We also demonstrate how they offer interesting perspectives on data when not only the mean of the dependent variable is modeled, but also its variance, skewness, and kurtosis. As an illustration, the case of phonemic inventory size is analyzed throughout the article. For over 1,500 languages, we consider as predictors the number of speakers, the distance from Africa, an estimation of the intensity of language contact, and linguistic relationships. We discuss the use of random effects to account for genealogical relationships, the choice of appropriate distributions to model count data, and non-linear relationships

  20. Modeling Linguistic Variables With Regression Models: Addressing Non-Gaussian Distributions, Non-independent Observations, and Non-linear Predictors With Random Effects and Generalized Additive Models for Location, Scale, and Shape.

    Science.gov (United States)

    Coupé, Christophe

    2018-01-01

    As statistical approaches are getting increasingly used in linguistics, attention must be paid to the choice of methods and algorithms used. This is especially true since they require assumptions to be satisfied to provide valid results, and because scientific articles still often fall short of reporting whether such assumptions are met. Progress is being, however, made in various directions, one of them being the introduction of techniques able to model data that cannot be properly analyzed with simpler linear regression models. We report recent advances in statistical modeling in linguistics. We first describe linear mixed-effects regression models (LMM), which address grouping of observations, and generalized linear mixed-effects models (GLMM), which offer a family of distributions for the dependent variable. Generalized additive models (GAM) are then introduced, which allow modeling non-linear parametric or non-parametric relationships between the dependent variable and the predictors. We then highlight the possibilities offered by generalized additive models for location, scale, and shape (GAMLSS). We explain how they make it possible to go beyond common distributions, such as Gaussian or Poisson, and offer the appropriate inferential framework to account for 'difficult' variables such as count data with strong overdispersion. We also demonstrate how they offer interesting perspectives on data when not only the mean of the dependent variable is modeled, but also its variance, skewness, and kurtosis. As an illustration, the case of phonemic inventory size is analyzed throughout the article. For over 1,500 languages, we consider as predictors the number of speakers, the distance from Africa, an estimation of the intensity of language contact, and linguistic relationships. We discuss the use of random effects to account for genealogical relationships, the choice of appropriate distributions to model count data, and non-linear relationships. Relying on GAMLSS, we

  1. Robust stability of uncertain Markovian jumping Cohen-Grossberg neural networks with mixed time-varying delays

    International Nuclear Information System (INIS)

    Sheng Li; Yang Huizhong

    2009-01-01

    This paper considers the robust stability of a class of uncertain Markovian jumping Cohen-Grossberg neural networks (UMJCGNNs) with mixed time-varying delays. The parameter uncertainties are norm-bounded and the mixed time-varying delays comprise discrete and distributed time delays. Based on the Lyapunov stability theory and linear matrix inequality (LMI) technique, some robust stability conditions guaranteeing the global robust convergence of the equilibrium point are derived. An example is given to show the effectiveness of the proposed results.

  2. Simultaneous injection effective mixing flow analysis of urinary albumin using dye-binding reaction.

    Science.gov (United States)

    Ratanawimarnwong, Nuanlaor; Ponhong, Kraingkrai; Teshima, Norio; Nacapricha, Duangjai; Grudpan, Kate; Sakai, Tadao; Motomizu, Shoji

    2012-07-15

    A new four-channel simultaneous injection effective mixing flow analysis (SIEMA) system has been assembled for the determination of urinary albumin. The SIEMA system consisted of a syringe pump, two 5-way cross connectors, four holding coils, five 3-way solenoid valves, a 50-cm long mixing coil and a spectrophotometer. Tetrabromophenol blue anion (TBPB) in Triton X-100 micelle reacted with albumin at pH 3.2 to form a blue ion complex with a λ(max) 625nm. TBPB, Triton X-100, acetate buffer and albumin standard solutions were aspirated into four individual holding coils by a syringe pump and then the aspirated zones were simultaneously pushed in the reverse direction to the detector flow cell. Baseline drift, due to adsorption of TBPB-albumin complex on the wall of the hydrophobic PTFE tubing, was minimized by aspiration of Triton X-100 and acetate buffer solutions between samples. The calibration graph was linear in the range of 10-50μg/mL and the detection limit for albumin (3σ) was 0.53μg/mL. The RSD (n=11) at 30μg/mL was 1.35%. The sample throughput was 37/h. With a 10-fold dilution, interference from urine matrix was removed. The proposed method has advantages in terms of simple automation operation and short analysis time. Copyright © 2012 Elsevier B.V. All rights reserved.

  3. The effect of systematic light exposure on sleep and sleep quality in a mixed group of fatigued cancer survivors

    DEFF Research Database (Denmark)

    Wu, Lisa; Amidi, Ali; Valdimarsdottir, Heiddis

    2018-01-01

    Study objectives: Sleep disturbances are commonly reported by cancer survivors. Systematic light exposure using bright light has been used to improve sleep in other populations. In this secondary data analysis, the effect of morning administration of bright light on sleep and sleep quality....... Wrist actigraphy and the Pittsburgh Sleep Quality Index were administered at 4 time points: prior to light treatment (baseline), 2 weeks into the intervention, during the last week of the intervention, and 3 weeks post-intervention. Thirty-seven participants completed the end-of-intervention assessment....... Results: Repeated measures linear mixed models indicated a statistically significant time by treatment group interaction effect with sleep efficiency improving more in the bright light condition over time compared with the dim light condition [F(3,42)=5.55; p=0.003] with a large effect size (eta2...

  4. Effect of Integral Non-Linearity on Energy Calibration of ...

    African Journals Online (AJOL)

    The integral non-linearity (INL) of four spectroscopy systems, two integrated (A1 and A2) and two classical (B1 and B2) systems was determined using pulses from a random pulse generator. The effect of INL on the system's energy calibration was also determined. The effect is minimal in the classical system at high ...

  5. Effect of CSR shielding in the compact linear collider

    CERN Document Server

    Esberg, J; Apsimon, R; Schulte, D

    2014-01-01

    The Drive Beam complex of the Compact Linear Collider must use short bunches with a large charge making beam transport susceptible to unwanted effects of Coherent Synchrotron Radiation emitted in the dipole magnets. We present the effects of transporting the beam within a limited aperture which decreases the magnitude of the CSR wake. The effect, known as CSR shielding, eases the design of key components of the facility.

  6. Nitrile rubber - based nanocomposites prepared by melt mixing: effect of the mixing parameters on mechanical, dynamic-mechanical and creep behavior

    Directory of Open Access Journals (Sweden)

    Bluma G. Soares

    2010-01-01

    Full Text Available Nanocomposites constituted by nitrile rubber matrix and Cloisite 15A (OC15A as the organoclay were prepared by melt blending and cured with the m-phenylene-bis-maleimide (BMI/dicumyl peroxide (DCP system. The effect of mixing parameters on the clay dispersion was evaluated, including mixing temperature and time, and rotor speed of the internal mixer. The organoclay effectively accelerated the vulcanization reaction of NBR, which was attributed to the presence of the alkylammonium salt as the intercalant. All nanocomposites displayed improved tensile properties indicating a good reinforcing action of the clay. Also, the creep compliance was substantially reduced with the incorporation of the clay. X-ray diffraction studies showed the presence of intercalated and deintercalated clay population. The mixing parameters did not have an important effect on clay dispersion and properties of NBR-clay nanocomposites, except for the creep behavior.

  7. On the hyperbolicity condition in linear elasticity

    Directory of Open Access Journals (Sweden)

    Remigio Russo

    1991-05-01

    Full Text Available This talk, which is mainly expository and based on [2-5], discusses the hyperbolicity conditions in linear elastodynamics. Particular emphasis is devoted to the key role it plays in the uniqueness questions associated with the mixed boundary-initial value problem in unbounded domains.

  8. Effect of spacer grid mixing vanes on coolant outlet temperature distribution

    Energy Technology Data Exchange (ETDEWEB)

    Raemae, Tommi; Lahtinen, Tuukka; Brandt, Tellervo; Toppila, Timo [Fortum Power and Heat, Fortum (Finland). Nuclear Competence Center

    2012-08-15

    In Loviisa VVER-440-type NPP the coolant outlet temperature of the hot subchannel is constantly monitored during the operation. According to the authority requirement the maximum subchannel outlet temperature must not exceed the saturation temperature. Coolant temperature distribution inside the fuel assembly is affected by the efficiency of the coolant mixing. In order to enhance the coolant mixing the fuel manufacturer is introducing the additional mixing vanes on the fuel bundle spacer grids. In the paper the effect of the different mixing vane modifications is studied with computational fluid dynamics (CFD) simulation. Goal of the modelling is to find vane modifications with which sufficient mixing is reached with acceptable increase in the spacer grid pressure loss. The results of the studies are discussed in the paper. (orig.)

  9. Goodness-of-fit tests in mixed models

    KAUST Repository

    Claeskens, Gerda

    2009-05-12

    Mixed models, with both random and fixed effects, are most often estimated on the assumption that the random effects are normally distributed. In this paper we propose several formal tests of the hypothesis that the random effects and/or errors are normally distributed. Most of the proposed methods can be extended to generalized linear models where tests for non-normal distributions are of interest. Our tests are nonparametric in the sense that they are designed to detect virtually any alternative to normality. In case of rejection of the null hypothesis, the nonparametric estimation method that is used to construct a test provides an estimator of the alternative distribution. © 2009 Sociedad de Estadística e Investigación Operativa.

  10. Quantum Effects in Nanoantennas and Their Applications in Tunability, Mixing, and Rectification

    KAUST Repository

    Chen, Pai-Yen

    2015-08-04

    It has been recently shown that optical nanoantennas made of single or paired metallic nanoparticles can efficiently couple the propagating light into and from deeply subwavelength volumes. The strong light-matter interaction mediated by surface plasmons in metallic nanostructures allows for localizing optical fields to a subdiffraction-limited region, thereby enhancing emission of nanoemitters and offering the flexible control of nanofocused radiation. Here we theoretically study the nanodipole antennas with submicroscopic gaps, i.e. a few nanometers, for which there exists linear and high-order nonlinear quantum conductivities due to the photon-assisted tunneling effect. Noticeably, these quantum conductivities induced at the nanogap are enhanced by several orders of magnitude, due to the strongly localized optical fields associated with the plasmonic resonance.In this talk, we will show that by tailoring the geometry of nanoantennas and the quantum well structure, a quantum nanodipole antenna with a gap size of few nanometers can induce linear, high-order quantum conductivities that are considerably enhanced by the surface plasmon resonance. We envisage here a number of intriguing nanophotonic applications of these quantum nanoantennas, including (i) modulatable and switchable radiators and metamaterials, with electronic and all-optical tuning (which is related to the two photon absorption), (ii) optical rectification for detection and energy harvesting of infrared and visible light, which are related to the relevant second-order quantum conductivity, (iii) harmonic sensing for the work function and the optical index of nanoparticle, e.g. DNA and molecules, loaded inside the nanogap, and (iv) high harmonic generation and wave mixing with nonlinear quantum conductivities.

  11. Three-Dimensional Effects of Artificial Mixing in a Shallow Drinking-Water Reservoir

    Science.gov (United States)

    Chen, Shengyang; Little, John C.; Carey, Cayelan C.; McClure, Ryan P.; Lofton, Mary E.; Lei, Chengwang

    2018-01-01

    Studies that examine the effects of artificial mixing for water-quality mitigation in lakes and reservoirs often view a water column with a one-dimensional (1-D) perspective (e.g., homogenized epilimnetic and hypolimnetic layers). Artificial mixing in natural water bodies, however, is inherently three dimensional (3-D). Using a 3-D approach experimentally and numerically, the present study visualizes thermal structure and analyzes constituent transport under the influence of artificial mixing in a shallow drinking-water reservoir. The purpose is to improve the understanding of artificial mixing, which may help to better design and operate mixing systems. In this reservoir, a side-stream supersaturation (SSS) hypolimnetic oxygenation system and an epilimnetic bubble-plume mixing (EM) system were concurrently deployed in the deep region. The present study found that, while the mixing induced by the SSS system does not have a distinct 3-D effect on the thermal structure, epilimnetic mixing by the EM system causes 3-D heterogeneity. In the experiments, epilimnetic mixing deepened the lower metalimnetic boundary near the diffuser by about 1 m, with 55% reduction of the deepening rate at 120 m upstream of the diffuser. In a tracer study using a 3-D hydrodynamic model, the operational flow rate of the EM system is found to be an important short-term driver of constituent transport in the reservoir, whereas the duration of the EM system operation is the dominant long-term driver. The results suggest that artificial mixing substantially alters both 3-D thermal structure and constituent transport, and thus needs to be taken into account for reservoir management.

  12. Hyperbolicity and constrained evolution in linearized gravity

    International Nuclear Information System (INIS)

    Matzner, Richard A.

    2005-01-01

    Solving the 4-d Einstein equations as evolution in time requires solving equations of two types: the four elliptic initial data (constraint) equations, followed by the six second order evolution equations. Analytically the constraint equations remain solved under the action of the evolution, and one approach is to simply monitor them (unconstrained evolution). Since computational solution of differential equations introduces almost inevitable errors, it is clearly 'more correct' to introduce a scheme which actively maintains the constraints by solution (constrained evolution). This has shown promise in computational settings, but the analysis of the resulting mixed elliptic hyperbolic method has not been completely carried out. We present such an analysis for one method of constrained evolution, applied to a simple vacuum system, linearized gravitational waves. We begin with a study of the hyperbolicity of the unconstrained Einstein equations. (Because the study of hyperbolicity deals only with the highest derivative order in the equations, linearization loses no essential details.) We then give explicit analytical construction of the effect of initial data setting and constrained evolution for linearized gravitational waves. While this is clearly a toy model with regard to constrained evolution, certain interesting features are found which have relevance to the full nonlinear Einstein equations

  13. An overview of collective effects in circular and linear accelerators

    International Nuclear Information System (INIS)

    Ruth, R.D.

    1989-04-01

    The purpose of both linear and circular accelerator is, of course, to accelerate beams of charged particles. In order to do this it is necessary not only to accelerate particles but also to confine them transversely so that they remain in the vacuum environment. Originally, as accelerators were developed, the intensity of the beams was rather low and so the external fields could be applied without regard to the effects of the space-charge forces of the beams. However, as the demand for high intensity increased, collective effects that are due to the space-charge forces became increasingly important. In order to control a beam of particles we apply external fields. These focus the beam transversely and accelerate it and focus it longitudinally. In addition to these externally applied fields a particle within the beam feels a field due to the charge and current of all the other particles in the beam. By collective effects, we mean all those modifications to the beam behavior which are due to these beam-induced forces. The first two major topics discussed are linear and circular accelerators. In the linear accelerator case, we will consider as examples only electron linacs that have relatively high energy and so particles will have ν ≅ c. For circular accelerators we'll consider both protons and electrons or their anti-particles. The next two topics are single bunches and multi-bunches. In both linear accelerators and circular accelerators the particles have a bunched character because they are accelerated by an RF system, and the RF has a natural wavelength. The next two topics arise from the natural separation of longitudinal and transverse effects. 40 refs., 30 figs., 1 tab

  14. Longitudinal mixed-effects models for latent cognitive function

    NARCIS (Netherlands)

    van den Hout, Ardo; Fox, Gerardus J.A.; Muniz-Terrera, Graciela

    2015-01-01

    A mixed-effects regression model with a bent-cable change-point predictor is formulated to describe potential decline of cognitive function over time in the older population. For the individual trajectories, cognitive function is considered to be a latent variable measured through an item response

  15. [Growth effect of eucalyptus-acacia mixed plantation in South China].

    Science.gov (United States)

    Yang, Zeng-Jiang; Xu, Da-Ping; Chen, Wen-Ping; Huang, Lie-Jian; Li, Shang-Jun; Chen, Yuan

    2009-10-01

    Eucalyptus U6 and Acacia crassicarpa were mixed planted with different ratios and modes to investigate the growth parameters of the two tree species. In the 2-3 years old mixed plantation, the wind-throw of A. crassicarpa decreased markedly with increasing ratio of Eucalyptus U6, the decrement being 26.14% when the Eucalyptus U6/A. crassicarpa ratio was 3 : 1, but the survival rates of Eucalyptus U6 and A. crassicarpa had no significant difference under different planting modes. Mixed planting retarded the A. crassicarpa growth to some extent, with the DBH being 90% of that in pure A. crassicarpa stand. The mixed planting had little effects on the height growth of Eucalyptus U6, but promoted its DBH growth markedly, and the beneficial effect increased with increasing ratio of A. crassicarpa. In the 6 years old 1 : 1 Eucalyptus U6/A. crassicarpa plantation, the Eucalyptus U6 individuals with DBH > 15 cm occupied 32.1%; while in pure Eucalyptus U6 stand, they only accounted for 5.83%. Mixed planting with 2 : 1 Eucalyptus U6/A. crassicarpa could obtain a maximum total biomass of 198.8 m3 x hm(-2), which was 118.8% of the total biomass in pure Eucalyptus U6 stand, or 169.9% of that in pure A. crassicarpa stand. Mixture of Eucalyptus with Acacia would be a good choice to produce Eucalyptus trees with larger DBH.

  16. Growth of KNN thin films for non-linear optical applications

    International Nuclear Information System (INIS)

    Sharma, Shweta; Gupta, Reema; Gupta, Vinay; Tomar, Monika

    2018-01-01

    Two-wave mixing is a remarkable area of research in the field of non-linear optics, finding various applications in the development of opto-electronic devices, photorefractive waveguides, real time holography, etc. Non-linear optical properties of ferroelectric potassium sodium niobate (KNN) thin films have been interrogated using two-wave mixing phenomenon. Regarding this, a-axis oriented K 0.35 Na (1-0.35) NbO 3 thin films were successfully grown on epitaxial matched (100) SrTiO 3 substrate using pulsed laser deposition (PLD) technique. The uniformly distributed Au micro-discs of 200 μm diameter were integrated with KNN/STO thin film to study the plasmonic enhancement in the optical response. Beam amplification has been observed as a result of the two-wave mixing. This is due to the alignment of ferroelectric domains in KNN films and the excitement of plasmons at the metal-dielectric (Au-KNN) interface. (copyright 2017 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  17. Growth of KNN thin films for non-linear optical applications

    Energy Technology Data Exchange (ETDEWEB)

    Sharma, Shweta; Gupta, Reema; Gupta, Vinay [Department of Physics and Astrophysics, University of Delhi (India); Tomar, Monika [Department of Physics, Miranda House University of Delhi (India)

    2018-02-15

    Two-wave mixing is a remarkable area of research in the field of non-linear optics, finding various applications in the development of opto-electronic devices, photorefractive waveguides, real time holography, etc. Non-linear optical properties of ferroelectric potassium sodium niobate (KNN) thin films have been interrogated using two-wave mixing phenomenon. Regarding this, a-axis oriented K{sub 0.35}Na{sub (1-0.35)}NbO{sub 3} thin films were successfully grown on epitaxial matched (100) SrTiO{sub 3} substrate using pulsed laser deposition (PLD) technique. The uniformly distributed Au micro-discs of 200 μm diameter were integrated with KNN/STO thin film to study the plasmonic enhancement in the optical response. Beam amplification has been observed as a result of the two-wave mixing. This is due to the alignment of ferroelectric domains in KNN films and the excitement of plasmons at the metal-dielectric (Au-KNN) interface. (copyright 2017 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  18. Amplitudes for multiphoton quantum processes in linear optics

    International Nuclear Information System (INIS)

    UrIas, Jesus

    2011-01-01

    The prominent role that linear optical networks have acquired in the engineering of photon states calls for physically intuitive and automatic methods to compute the probability amplitudes for the multiphoton quantum processes occurring in linear optics. A version of Wick's theorem for the expectation value, on any vector state, of products of linear operators, in general, is proved. We use it to extract the combinatorics of any multiphoton quantum processes in linear optics. The result is presented as a concise rule to write down directly explicit formulae for the probability amplitude of any multiphoton process in linear optics. The rule achieves a considerable simplification and provides an intuitive physical insight about quantum multiphoton processes. The methodology is applied to the generation of high-photon-number entangled states by interferometrically mixing coherent light with spontaneously down-converted light.

  19. Amplitudes for multiphoton quantum processes in linear optics

    Science.gov (United States)

    Urías, Jesús

    2011-07-01

    The prominent role that linear optical networks have acquired in the engineering of photon states calls for physically intuitive and automatic methods to compute the probability amplitudes for the multiphoton quantum processes occurring in linear optics. A version of Wick's theorem for the expectation value, on any vector state, of products of linear operators, in general, is proved. We use it to extract the combinatorics of any multiphoton quantum processes in linear optics. The result is presented as a concise rule to write down directly explicit formulae for the probability amplitude of any multiphoton process in linear optics. The rule achieves a considerable simplification and provides an intuitive physical insight about quantum multiphoton processes. The methodology is applied to the generation of high-photon-number entangled states by interferometrically mixing coherent light with spontaneously down-converted light.

  20. Biological vs. physical mixing effects on benthic food web dynamics.

    Directory of Open Access Journals (Sweden)

    Ulrike Braeckman

    Full Text Available Biological particle mixing (bioturbation and solute transfer (bio-irrigation contribute extensively to ecosystem functioning in sediments where physical mixing is low. Macrobenthos transports oxygen and organic matter deeper into the sediment, thereby likely providing favourable niches to lower trophic levels (i.e., smaller benthic animals such as meiofauna and bacteria and thus stimulating mineralisation. Whether this biological transport facilitates fresh organic matter assimilation by the metazoan lower part of the food web through niche establishment (i.e., ecosystem engineering or rather deprives them from food sources, is so far unclear. We investigated the effects of the ecosystem engineers Lanice conchilega (bio-irrigator and Abra alba (bioturbator compared to abiotic physical mixing events on survival and food uptake of nematodes after a simulated phytoplankton bloom. The (13C labelled diatom Skeletonema costatum was added to 4 treatments: (1 microcosms containing the bioturbator, (2 microcosms containing the bio-irrigator, (3 control microcosms and (4 microcosms with abiotic manual surface mixing. Nematode survival and subsurface peaks in nematode density profiles were most pronounced in the bio-irrigator treatment. However, nematode specific uptake (Δδ(13C of the added diatoms was highest in the physical mixing treatment, where macrobenthos was absent and the diatom (13C was homogenised. Overall, nematodes fed preferentially on bulk sedimentary organic material rather than the added diatoms. The total C budget (µg C m(-2, which included TO(13C remaining in the sediment, respiration, nematode and macrobenthic uptake, highlighted the limited assimilation by the metazoan benthos and the major role of bacterial respiration. In summary, bioturbation and especially bio-irrigation facilitated the lower trophic levels mainly over the long-term through niche establishment. Since the freshly added diatoms represented only a limited food

  1. Badly approximable systems of linear forms in absolute value

    DEFF Research Database (Denmark)

    Hussain, M.; Kristensen, Simon

    In this paper we show that the set of mixed type badly approximable simultaneously small linear forms is of maximal dimension. As a consequence of this theorem we settle the conjecture stated in [9]....

  2. A large mixing effect on eta,eta' and iota

    International Nuclear Information System (INIS)

    Kawai, E.

    1983-01-01

    We quantitatively investigate a possible large mixing effect on eta(549), eta'(958) and iota(1440) in a phenomenological way, taking both SU(3) symmetry breaking and gluon intervention into due account. (orig.)

  3. A unified frame of predicting side effects of drugs by using linear neighborhood similarity.

    Science.gov (United States)

    Zhang, Wen; Yue, Xiang; Liu, Feng; Chen, Yanlin; Tu, Shikui; Zhang, Xining

    2017-12-14

    Drug side effects are one of main concerns in the drug discovery, which gains wide attentions. Investigating drug side effects is of great importance, and the computational prediction can help to guide wet experiments. As far as we known, a great number of computational methods have been proposed for the side effect predictions. The assumption that similar drugs may induce same side effects is usually employed for modeling, and how to calculate the drug-drug similarity is critical in the side effect predictions. In this paper, we present a novel measure of drug-drug similarity named "linear neighborhood similarity", which is calculated in a drug feature space by exploring linear neighborhood relationship. Then, we transfer the similarity from the feature space into the side effect space, and predict drug side effects by propagating known side effect information through a similarity-based graph. Under a unified frame based on the linear neighborhood similarity, we propose method "LNSM" and its extension "LNSM-SMI" to predict side effects of new drugs, and propose the method "LNSM-MSE" to predict unobserved side effect of approved drugs. We evaluate the performances of LNSM and LNSM-SMI in predicting side effects of new drugs, and evaluate the performances of LNSM-MSE in predicting missing side effects of approved drugs. The results demonstrate that the linear neighborhood similarity can improve the performances of side effect prediction, and the linear neighborhood similarity-based methods can outperform existing side effect prediction methods. More importantly, the proposed methods can predict side effects of new drugs as well as unobserved side effects of approved drugs under a unified frame.

  4. Evaluation of non-linear blending in dual-energy computed tomography

    International Nuclear Information System (INIS)

    Holmes, David R.; Fletcher, Joel G.; Apel, Anja; Huprich, James E.; Siddiki, Hassan; Hough, David M.; Schmidt, Bernhard; Flohr, Thomas G.; Robb, Richard; McCollough, Cynthia; Wittmer, Michael; Eusemann, Christian

    2008-01-01

    Dual-energy CT scanning has significant potential for disease identification and classification. However, it dramatically increases the amount of data collected and therefore impacts the clinical workflow. One way to simplify image review is to fuse CT datasets of different tube energies into a unique blended dataset with desirable properties. A non-linear blending method based on a modified sigmoid function was compared to a standard 0.3 linear blending method. The methods were evaluated in both a liver phantom and patient study. The liver phantom contained six syringes of known CT contrast which were placed in a bovine liver. After scanning at multiple tube currents (45, 55, 65, 75, 85, 95, 105, and 115 mAs for the 140-kV tube), the datasets were blended using both methods. A contrast-to-noise (CNR) measure was calculated for each syringe. In addition, all eight scans were normalized using the effective dose and statistically compared. In the patient study, 45 dual-energy CT scans were retrospectively mixed using the 0.3 linear blending and modified sigmoid blending functions. The scans were compared visually by two radiologists. For the 15, 45, and 64 HU syringes, the non-linear blended images exhibited similar CNR to the linear blended images; however, for the 79, 116, and 145 HU syringes, the non-linear blended images consistently had a higher CNR across dose settings. The radiologists qualitatively preferred the non-linear blended images of the phantom. In the patient study, the radiologists preferred non-linear blending in 31 of 45 cases with a strong preference in bowel and liver cases. Non-linear blending of dual energy data can provide an improvement in CNR over linear blending and is accompanied by a visual preference for non-linear blended images. Further study on selection of blending parameters and lesion conspicuity in non-linear blended images is being pursued

  5. Hydrostatic pressure effects on the {gamma}-X conduction band mixing and the binding energy of a donor impurity in GaAs-Ga{sub 1-x}Al{sub x}As quantum wells

    Energy Technology Data Exchange (ETDEWEB)

    Duque, C.A. [Instituto de Fisica, Universidad de Antioquia, AA 1226, Medellin (Colombia); Lopez, S.Y. [Facultad de Educacion, Universidad de Antioquia, AA 1226, Medellin (Colombia); Mora-Ramos, M.E. [Facultad de Ciencias, Universidad Autonoma del Estado de Morelos, Av. Universidad 1001, C.P. 62210, Cuernavaca (Mexico)

    2007-06-15

    Mixing between {gamma} and X valleys of the conduction band in GaAs-Ga{sub 1-x}Al{sub x}As quantum wells is investigated taken into account the effect of applied hydrostatic pressure. This effect is introduced via the pressure-dependent values of the corresponding energy gaps and the main band parameters. The mixing is considered along the lines of a phenomenological model. Variation of the confined ground state in the well as a function of the pressure is reported. The dependencies of the variationally calculated binding energy of a donor impurity with the hydrostatic pressure and well width are also presented. It is shown that the inclusion of the {gamma}-X mixing explains the non-linear behavior in the photoluminescence peak of confined exciton states that has been observed for pressures above 20 kbar. (copyright 2007 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  6. Effects of partitioned enthalpy of mixing on glass-forming ability

    Energy Technology Data Exchange (ETDEWEB)

    Song, Wen-Xiong; Zhao, Shi-Jin, E-mail: shijin.zhao@shu.edu.cn [Institute of Materials Science, Shanghai University, Shanghai 200072 (China)

    2015-04-14

    We explore the inherent reason at atomic level for the glass-forming ability of alloys by molecular simulation, in which the effect of partitioned enthalpy of mixing is studied. Based on Morse potential, we divide the enthalpy of mixing into three parts: the chemical part (Δ E{sub nn}), strain part (Δ E{sub strain}), and non-bond part (Δ E{sub nnn}). We find that a large negative Δ E{sub nn} value represents strong AB chemical bonding in AB alloy and is the driving force to form a local ordered structure, meanwhile the transformed local ordered structure needs to satisfy the condition (Δ E{sub nn}/2 + Δ E{sub strain}) < 0 to be stabilized. Understanding the chemical and strain parts of enthalpy of mixing is helpful to design a new metallic glass with a good glass forming ability. Moreover, two types of metallic glasses (i.e., “strain dominant” and “chemical dominant”) are classified according to the relative importance between chemical effect and strain effect, which enriches our knowledge of the forming mechanism of metallic glass. Finally, a soft sphere model is established, different from the common hard sphere model.

  7. The sky pattern of the linearized gravitational memory effect

    International Nuclear Information System (INIS)

    Mädler, Thomas; Winicour, Jeffrey

    2016-01-01

    The gravitational memory effect leads to a net displacement in the relative positions of test particles. This memory is related to the change in the strain of the gravitational radiation field between infinite past and infinite future retarded times. There are three known sources of the memory effect: (i) the loss of energy to future null infinity by massless fields or particles, (ii) the ejection of massive particles to infinity from a bound system and (iii) homogeneous, source-free gravitational waves. In the context of linearized theory, we show that asymptotic conditions controlling these known sources of the gravitational memory effect rule out any other possible sources with physically reasonable stress–energy tensors. Except for the source-free gravitational waves, the two other known sources produce gravitational memory with E -mode radiation strain, characterized by a certain curl-free sky pattern of their polarization. Thus our results show that the only known source of B -mode gravitational memory is of primordial origin, corresponding in the linearized theory to a homogeneous wave entering from past null infinity. (paper)

  8. Unique heavy lepton signature at e+e- linear collider with polarized beams

    International Nuclear Information System (INIS)

    Moortgat-Pick, G.; Osland, P.; Pankov, A.A.; Tsytrinov, A.V.

    2013-03-01

    We explore the effects of neutrino and electron mixing with exotic heavy leptons in the process e + e - →W + W - within E 6 models. We examine the possibility of uniquely distinguishing and identifying such effects of heavy neutral lepton exchange from Z-Z' mixing within the same class of models and also from analogous ones due to competitor models with anomalous trilinear gauge couplings (AGC) that can lead to very similar experimental signatures at the e + e - International Linear Collider (ILC) for √(s)=350, 500 GeV and 1 TeV. Such clear identification of the model is possible by using a certain double polarization asymmetry. The availability of both beams being polarized plays a crucial role in identifying such exotic-lepton admixture. In addition, the sensitivity of the ILC for probing exotic-lepton admixture is substantially enhanced when the polarization of the produced W ± bosons is considered.

  9. Twice random, once mixed: applying mixed models to simultaneously analyze random effects of language and participants.

    Science.gov (United States)

    Janssen, Dirk P

    2012-03-01

    Psychologists, psycholinguists, and other researchers using language stimuli have been struggling for more than 30 years with the problem of how to analyze experimental data that contain two crossed random effects (items and participants). The classical analysis of variance does not apply; alternatives have been proposed but have failed to catch on, and a statistically unsatisfactory procedure of using two approximations (known as F(1) and F(2)) has become the standard. A simple and elegant solution using mixed model analysis has been available for 15 years, and recent improvements in statistical software have made mixed models analysis widely available. The aim of this article is to increase the use of mixed models by giving a concise practical introduction and by giving clear directions for undertaking the analysis in the most popular statistical packages. The article also introduces the DJMIXED: add-on package for SPSS, which makes entering the models and reporting their results as straightforward as possible.

  10. Emergence of Griffiths phase and glassy mixed phase in Sm0.5Ca0.5MnO3 nanomanganites

    International Nuclear Information System (INIS)

    Giri, S.K.; Yusuf, S.M.; Mukadam, M.D.; Nath, T.K.

    2014-01-01

    Graphical abstract: A detailed investigation on the effect of grain size on formation of Griffiths phase, and glassy mixed phase in CE-type antiferromagnetic Sm 0.5 Ca 0.5 MnO 3 manganite are carried out. A rigorous measurement of linear and non-linear ac magnetic susceptibilities, time dependent relaxation and aging phenomena in Sm 0.5 Ca 0.5 MnO 3 nanomanganite confirm the existence of a glassy mixed phase in the low temperature regime. The signature of Griffiths phase in nanosized manganite has been confirmed from the detailed ac and dc magnetization studies. The existence of Griffiths phase is verified through the anomalous behavior of the low field temperature dependent an inverse ac and dc magnetic susceptibility. Based on experimental results, the glassy phase of nanomanganites has been attributed to the phase separation effect and interaction between the ferromagnetic clusters. A phenomenological core/shell model has also been proposed based on the surface disorder to explain the observed Griffiths phase in these nanosized manganites. Fig. 1: (Left) The plot of inverse of ac susceptibility χ ac -1 measured at f = 1 Hz and H ac = 2 Oe as a function of temperature for S750 sample. Inset shows the same for S550 sample. (Right) A schematic of the proposed model to describe the magnetic state of the Sm 0.5 Ca 0.5 MnO 3 system at different average sizes. Highlights: • Effect of grain size on Griffiths phase and glassy mixed phase is discussed. • GP is confirmed by dc, linear and non-linear ac magnetization in nanomanganites. • Glassy mixed phase is discussed by time dependent relaxation and aging phenomena. • The existence of GP is verified through an inverse ac and dc magnetic susceptibility. • A phenomenological core/shell model has been proposed based on surface disorder. -- Abstract: A detailed investigation on the effect of grain size on formation of Griffiths phase (GP), and glassy mixed phase in CE-type antiferromagnetic Sm 0.5 Ca 0.5 MnO 3

  11. Variable-property effects in laminar aiding and opposing mixed convection of air in vertical tubes

    International Nuclear Information System (INIS)

    Nesreddine, H.; Galanis, N.; Nguyen, C.T.

    1997-01-01

    Mixed convection flow in tubes is encountered in many engineering applications, such as solar collectors, nuclear reactors, and compact heat exchangers. Here, a numerical investigation has been conducted in order to determine the effects of variable properties on the flow pattern and heat transfer performances in laminar developing ascending flow with mixed convection for two cases: in case 1 the fluid is heated, and in case 2 it is cooled. Calculations are performed for air at various Grashof numbers with a fixed entrance Reynolds number of 500 using both the Boussinesq approximation (constant-property model) and a variable-property model. In the latter case, the fluid viscosity and thermal conductivity are allowed to vary with absolute temperature according to simple power laws, while the density varies linearly with the temperature, and the heat capacity is assumed to be constant. The comparison between constant- and variable-property models shows a substantial difference in the temperature and velocity fields when the Grashof number |Gr| is increased. The friction factor is seen to be underpredicted by the Boussinesq approximation when the fluid is heated (case 1), while it is overpredicted for the cooling case (case 2). However, the effects on the heat transfer performance remain negligible except for cases with reverse flow. On the whole, the variable-property model predicts flow reversal at lower values of |Gr|, especially for flows with opposing buoyancy forces. The deviation in results is associated to the difference between the fluid bulk and the wall temperature

  12. Non-linear effective Lagrangian treatment of 'Penguin' interaction

    International Nuclear Information System (INIS)

    Pham, T.N.

    1984-01-01

    Using the non-linear effective lagrangian technique, we show explicitly that only derivative coupling is allowed for the K - π, K -> 2 π and K -> 3 π transitions induced by the ΔS = 1 Penguin operator of SVZ in agreement with chiral symmetry requirements. From a derivative coupling (3, anti 3) mass term and the SU(3) breaking effect for fsub(K)/fsub(π), we estimate the strength of the Penguin interactions and find it too small to account for the ΔI = 1/2 amplitude. (orig.)

  13. Effect of mixing techniques on bacterial attachment and disinfection time of polyether impression material.

    Science.gov (United States)

    Guler, Umut; Budak, Yasemin; Ruh, Emrah; Ocal, Yesim; Canay, Senay; Akyon, Yakut

    2013-09-01

    The aim of this study was 2-fold. The first aim was to evaluate the effects of mixing technique (hand-mixing or auto-mixing) on bacterial attachment to polyether impression materials. The second aim was to determine whether bacterial attachment to these materials was affected by length of exposure to disinfection solutions. Polyether impression material samples (n = 144) were prepared by hand-mixing or auto-mixing. Escherichia coli, Staphylococcus aureus and Pseudomonas aeruginosa were used in testing. After incubation, the bacterial colonies were counted and then disinfectant solution was applied. The effect of disinfection solution was evaluated just after the polymerization of impression material and 30 min after polymerization. Differences in adherence of bacteria to the samples prepared by hand-mixing and to those prepared by auto-mixing were assessed by Kruskal-Wallis and Mann-Whitney U-tests. For evaluating the efficiency of the disinfectant, Kruskal-Wallis multiple comparisons test was used. E. coli counts were higher in hand-mixed materials (P 2.394). The methods used for mixing polyether impression material did not affect bacterial attachment to impression surfaces. In contrast, the disinfection procedure greatly affects decontamination of the impression surface.

  14. Mixed Beam Murine Harderian Gland Tumorigenesis: Predicted Dose-Effect Relationships if neither Synergism nor Antagonism Occurs

    Energy Technology Data Exchange (ETDEWEB)

    Siranart, Nopphon; Blakely, Eleanor A.; Cheng, Alden; Handa, Naval; Sachs, Rainer K.

    2016-12-01

    Complex mixed radiation fields exist in interplanetary space, and not much is known about their latent effects on space travelers. In silico synergy analysis default predictions are useful when planning relevant mixed-ion-beam experiments and interpreting their results. These predictions are based on individual dose-effect relationships (IDER) for each component of the mixed-ion beam, assuming no synergy or antagonism. For example, a default hypothesis of simple effect additivity has often been used throughout the study of biology. However, for more than a century pharmacologists interested in mixtures of therapeutic drugs have analyzed conceptual, mathematical and practical questions similar to those that arise when analyzing mixed radiation fields, and have shown that simple effect additivity often gives unreasonable predictions when the IDER are curvilinear. Various alternatives to simple effect additivity proposed in radiobiology, pharmacometrics, toxicology and other fields are also known to have important limitations. In this work, we analyze upcoming murine Harderian gland (HG) tumor prevalence mixed-beam experiments, using customized open-source software and published IDER from past single-ion experiments. The upcoming experiments will use acute irradiation and the mixed beam will include components of high atomic number and energy (HZE). We introduce a new alternative to simple effect additivity, "incremental effect additivity", which is more suitable for the HG analysis and perhaps for other end points. We use incremental effect additivity to calculate default predictions for mixture dose-effect relationships, including 95% confidence intervals. We have drawn three main conclusions from this work. 1. It is important to supplement mixed-beam experiments with single-ion experiments, with matching end point(s), shielding and dose timing. 2. For HG tumorigenesis due to a mixed beam, simple effect additivity and incremental effect additivity sometimes give

  15. Effect of Variable Viscosity on Vortex Instability of Non-Darcy Mixed Convection Boundary Layer Flow Adjacent to a Nonisothermal Horizontal Surface in a Porous Medium

    Directory of Open Access Journals (Sweden)

    A. M. Elaiw

    2012-01-01

    Full Text Available We study the effect of variable viscosity on the flow and vortex instability for non-Darcy mixed convection boundary layer flow on a nonisothermal horizontal plat surface in a saturated porous medium. The variation of viscosity is expressed as an exponential function of temperature. The analysis of the disturbance flow is based on linear stability theory. The base flow equations and the resulting eigenvalue problem are solved using finite difference schemes. It is found that the variable viscosity effect enhances the heat transfer rate and destabilizes the flow for liquid heating, while the opposite trend is true for gas heating.

  16. Large Spatial and Temporal Separations of Cause and Effect in Policy Making - Dealing with Non-linear Effects

    Science.gov (United States)

    McCaskill, John

    There can be large spatial and temporal separation of cause and effect in policy making. Determining the correct linkage between policy inputs and outcomes can be highly impractical in the complex environments faced by policy makers. In attempting to see and plan for the probable outcomes, standard linear models often overlook, ignore, or are unable to predict catastrophic events that only seem improbable due to the issue of multiple feedback loops. There are several issues with the makeup and behaviors of complex systems that explain the difficulty many mathematical models (factor analysis/structural equation modeling) have in dealing with non-linear effects in complex systems. This chapter highlights those problem issues and offers insights to the usefulness of ABM in dealing with non-linear effects in complex policy making environments.

  17. Effects of internal mixing and aggregate morphology on optical properties of black carbon using a discrete dipole approximation model

    Directory of Open Access Journals (Sweden)

    B. V. Scarnato

    2013-05-01

    Full Text Available According to recent studies, internal mixing of black carbon (BC with other aerosol materials in the atmosphere alters its aggregate shape, absorption of solar radiation, and radiative forcing. These mixing state effects are not yet fully understood. In this study, we characterize the morphology and mixing state of bare BC and BC internally mixed with sodium chloride (NaCl using electron microscopy and examine the sensitivity of optical properties to BC mixing state and aggregate morphology using a discrete dipole approximation model (DDSCAT. DDSCAT is flexible in simulating the geometry and refractive index of particle aggregates. DDSCAT predicts a higher mass absorption coefficient (MAC, lower single scattering albedo (SSA, and higher absorption Angstrom exponent (AAE for bare BC aggregates that are lacy rather than compact. Predicted values of SSA at 550 nm range between 0.16 and 0.27 for lacy and compact aggregates, respectively, in agreement with reported experimental values of 0.25 ± 0.05. The variation in absorption with wavelength does not adhere precisely to a power law relationship over the 200 to 1000 nm range. Consequently, AAE values depend on the wavelength region over which they are computed. The MAC of BC (averaged over the 200–1000 nm range is amplified when internally mixed with NaCl (100–300 nm in radius by factors ranging from 1.0 for lacy BC aggregates partially immersed in NaCl to 2.2 for compact BC aggregates fully immersed in NaCl. The SSA of BC internally mixed with NaCl is higher than for bare BC and increases with the embedding in the NaCl. Internally mixed BC SSA values decrease in the 200–400 nm wavelength range, a feature also common to the optical properties of dust and organics. Linear polarization features are also predicted in DDSCAT and are dependent on particle size and morphology. This study shows that DDSCAT predicts complex morphology and mixing state dependent aerosol optical properties that have

  18. Multivariate covariance generalized linear models

    DEFF Research Database (Denmark)

    Bonat, W. H.; Jørgensen, Bent

    2016-01-01

    are fitted by using an efficient Newton scoring algorithm based on quasi-likelihood and Pearson estimating functions, using only second-moment assumptions. This provides a unified approach to a wide variety of types of response variables and covariance structures, including multivariate extensions......We propose a general framework for non-normal multivariate data analysis called multivariate covariance generalized linear models, designed to handle multivariate response variables, along with a wide range of temporal and spatial correlation structures defined in terms of a covariance link...... function combined with a matrix linear predictor involving known matrices. The method is motivated by three data examples that are not easily handled by existing methods. The first example concerns multivariate count data, the second involves response variables of mixed types, combined with repeated...

  19. Effect of using fly ash as alternative filler in hot mix asphalt

    Directory of Open Access Journals (Sweden)

    Raja Mistry

    2016-09-01

    Full Text Available This study investigates the effect of using fly ash (FA in asphalt mixture as replacement of common filler. In view of the same, samples were prepared for different bitumen content (3.5−6.5% at 0.5% increments by using 2% hydrated lime (HL in control mix as well as varying percentage of FA ranging from 2 to 8% as alternative filler in modified mixes. The optimum bitumen content (OBC was then determined for all the mix by Marshall mix design. Experimental results indicated higher stability value with lower OBC for the mixture having 4% FA as optimum filler content in comparison with conventional mix and standard specification. So this study discuss the feasibility of using FA as alternative filler instead of HL in asphalt concrete mix by satisfying the standard specification.

  20. The linear-non-linear frontier for the Goldstone Higgs

    International Nuclear Information System (INIS)

    Gavela, M.B.; Saa, S.; Kanshin, K.; Machado, P.A.N.

    2016-01-01

    The minimal SO(5)/SO(4) σ-model is used as a template for the ultraviolet completion of scenarios in which the Higgs particle is a low-energy remnant of some high-energy dynamics, enjoying a (pseudo) Nambu-Goldstone-boson ancestry. Varying the σ mass allows one to sweep from the perturbative regime to the customary non-linear implementations. The low-energy benchmark effective non-linear Lagrangian for bosons and fermions is obtained, determining as well the operator coefficients including linear corrections. At first order in the latter, three effective bosonic operators emerge which are independent of the explicit soft breaking assumed. The Higgs couplings to vector bosons and fermions turn out to be quite universal: the linear corrections are proportional to the explicit symmetry-breaking parameters. Furthermore, we define an effective Yukawa operator which allows a simple parametrization and comparison of different heavy-fermion ultraviolet completions. In addition, one particular fermionic completion is explored in detail, obtaining the corresponding leading low-energy fermionic operators. (orig.)

  1. The linear-non-linear frontier for the Goldstone Higgs

    Energy Technology Data Exchange (ETDEWEB)

    Gavela, M.B.; Saa, S. [IFT-UAM/CSIC, Universidad Autonoma de Madrid, Departamento de Fisica Teorica y Instituto de Fisica Teorica, Madrid (Spain); Kanshin, K. [Universita di Padova, Dipartimento di Fisica e Astronomia ' G. Galilei' , Padua (Italy); INFN, Padova (Italy); Machado, P.A.N. [IFT-UAM/CSIC, Universidad Autonoma de Madrid, Departamento de Fisica Teorica y Instituto de Fisica Teorica, Madrid (Spain); Fermi National Accelerator Laboratory, Theoretical Physics Department, Batavia, IL (United States)

    2016-12-15

    The minimal SO(5)/SO(4) σ-model is used as a template for the ultraviolet completion of scenarios in which the Higgs particle is a low-energy remnant of some high-energy dynamics, enjoying a (pseudo) Nambu-Goldstone-boson ancestry. Varying the σ mass allows one to sweep from the perturbative regime to the customary non-linear implementations. The low-energy benchmark effective non-linear Lagrangian for bosons and fermions is obtained, determining as well the operator coefficients including linear corrections. At first order in the latter, three effective bosonic operators emerge which are independent of the explicit soft breaking assumed. The Higgs couplings to vector bosons and fermions turn out to be quite universal: the linear corrections are proportional to the explicit symmetry-breaking parameters. Furthermore, we define an effective Yukawa operator which allows a simple parametrization and comparison of different heavy-fermion ultraviolet completions. In addition, one particular fermionic completion is explored in detail, obtaining the corresponding leading low-energy fermionic operators. (orig.)

  2. Using a generalized linear mixed model approach to explore the role of age, motor proficiency, and cognitive styles in children's reach estimation accuracy.

    Science.gov (United States)

    Caçola, Priscila M; Pant, Mohan D

    2014-10-01

    The purpose was to use a multi-level statistical technique to analyze how children's age, motor proficiency, and cognitive styles interact to affect accuracy on reach estimation tasks via Motor Imagery and Visual Imagery. Results from the Generalized Linear Mixed Model analysis (GLMM) indicated that only the 7-year-old age group had significant random intercepts for both tasks. Motor proficiency predicted accuracy in reach tasks, and cognitive styles (object scale) predicted accuracy in the motor imagery task. GLMM analysis is suitable to explore age and other parameters of development. In this case, it allowed an assessment of motor proficiency interacting with age to shape how children represent, plan, and act on the environment.

  3. Genetic design of interpolated non-linear controllers for linear plants

    International Nuclear Information System (INIS)

    Ajlouni, N.

    2000-01-01

    The techniques of genetic algorithms are proposed as a means of designing non-linear PID control systems. It is shown that the use of genetic algorithms for this purpose results in highly effective non-linear PID control systems. These results are illustrated by using genetic algorithms to design a non-linear PID control system and contrasting the results with an optimally tuned linear PID controller. (author)

  4. Wakefield effects in a linear collider

    International Nuclear Information System (INIS)

    Bane, K.L.F.

    1986-12-01

    In this paper the wakefields for the Stanford Linear Accelerator Center (SLAC) accelerating structure are first discussed, and then some considerations dealing with the longitudinal wakefields are described. The main focus is on the effects of the transverse wakefield on the beam, including the case when there is an energy variation along the bunch. The use of an energy spread to inhibit emittance growth in a linac, indeed to damp the oscillations of the core of the bunch to below the unperturbed betatron oscillations, (in a process that is similar to Landau Damping) is qualitatively detailed. The example of the SLC, including errors, is also in detail

  5. Effects of collisions on linear and non-linear spectroscopic line shapes

    International Nuclear Information System (INIS)

    Berman, P.R.

    1978-01-01

    A fundamental physical problem is the determination of atom-atom, atom-molecule and molecule-molecule differential and total scattering cross sections. In this work, a technique for studying atomic and molecular collisions using spectroscopic line shape analysis is discussed. Collisions occurring within an atomic or molecular sample influence the sample's absorptive or emissive properties. Consequently the line shapes associated with the linear or non-linear absorption of external fields by an atomic system reflect the collisional processes occurring in the gas. Explicit line shape expressions are derived characterizing linear or saturated absorption by two-or three-level 'active' atoms which are undergoing collisions with perturber atoms. The line shapes may be broadened, shifted, narrowed, or distorted as a result of collisions which may be 'phase-interrupting' or 'velocity-changing' in nature. Systematic line shape studies can be used to obtain information on both the differential and total active atom-perturber scattering cross sections. (Auth.)

  6. Composition and structure of Pinus koraiensis mixed forest respond to spatial climatic changes.

    Science.gov (United States)

    Zhang, Jingli; Zhou, Yong; Zhou, Guangsheng; Xiao, Chunwang

    2014-01-01

    Although some studies have indicated that climate changes can affect Pinus koraiensis mixed forest, the responses of composition and structure of Pinus koraiensis mixed forests to climatic changes are unknown and the key climatic factors controlling the composition and structure of Pinus koraiensis mixed forest are uncertain. Field survey was conducted in the natural Pinus koraiensis mixed forests along a latitudinal gradient and an elevational gradient in Northeast China. In order to build the mathematical models for simulating the relationships of compositional and structural attributes of the Pinus koraiensis mixed forest with climatic and non-climatic factors, stepwise linear regression analyses were performed, incorporating 14 dependent variables and the linear and quadratic components of 9 factors. All the selected new models were computed under the +2°C and +10% precipitation and +4°C and +10% precipitation scenarios. The Max Temperature of Warmest Month, Mean Temperature of Warmest Quarter and Precipitation of Wettest Month were observed to be key climatic factors controlling the stand densities and total basal areas of Pinus koraiensis mixed forest. Increased summer temperatures and precipitations strongly enhanced the stand densities and total basal areas of broadleaf trees but had little effect on Pinus koraiensis under the +2°C and +10% precipitation scenario and +4°C and +10% precipitation scenario. These results show that the Max Temperature of Warmest Month, Mean Temperature of Warmest Quarter and Precipitation of Wettest Month are key climatic factors which shape the composition and structure of Pinus koraiensis mixed forest. Although the Pinus koraiensis would persist, the current forests dominated by Pinus koraiensis in the region would all shift and become broadleaf-dominated forests due to the dramatic increase of broadleaf trees under the future global warming and increased precipitation.

  7. Effects of mixing on resolved and unresolved scales on stratospheric age of air

    Directory of Open Access Journals (Sweden)

    S. Dietmüller

    2017-06-01

    Full Text Available Mean age of air (AoA is a widely used metric to describe the transport along the Brewer–Dobson circulation. We seek to untangle the effects of different processes on the simulation of AoA, using the chemistry–climate model EMAC (ECHAM/MESSy Atmospheric Chemistry and the Chemical Lagrangian Model of the Stratosphere (CLaMS. Here, the effects of residual transport and two-way mixing on AoA are calculated. To do so, we calculate the residual circulation transit time (RCTT. The difference of AoA and RCTT is defined as aging by mixing. However, as diffusion is also included in this difference, we further use a method to directly calculate aging by mixing on resolved scales. Comparing these two methods of calculating aging by mixing allows for separating the effect of unresolved aging by mixing (which we term aging by diffusion in the following in EMAC and CLaMS. We find that diffusion impacts AoA by making air older, but its contribution plays a minor role (order of 10 % in all simulations. However, due to the different advection schemes of the two models, aging by diffusion has a larger effect on AoA and mixing efficiency in EMAC, compared to CLaMS. Regarding the trends in AoA, in CLaMS the AoA trend is negative throughout the stratosphere except in the Northern Hemisphere middle stratosphere, consistent with observations. This slight positive trend is neither reproduced in a free-running nor in a nudged simulation with EMAC – in both simulations the AoA trend is negative throughout the stratosphere. Trends in AoA are mainly driven by the contributions of RCTT and aging by mixing, whereas the contribution of aging by diffusion plays a minor role.

  8. Granular boycott effect: How to mix granulates

    Science.gov (United States)

    Duran, J.; Mazozi, T.

    1999-11-01

    Granular material can display the basic features of the Boycott effect in sedimentation. A simple experiment shows that granular material falls faster in an inclined tube than in a vertical tube, in analogy with the Boycott effect. As long as the inclination of the tube is above the avalanche threshold, descent of granular material in the tube causes internal convection which in turn results in an efficient mixture of the granular components. By contrast, as in analogous experiments in two dimensions, a vertical fall of granular material occurs via successive block fragmentation, resulting in poor mixing.

  9. Linear IgA bullous dermatosis in a neonate.

    Science.gov (United States)

    Hruza, L L; Mallory, S B; Fitzgibbons, J; Mallory, G B

    1993-06-01

    A newborn black boy had two facial blisters at birth that progressed to bullous lesions over the trunk, genitals, extremities, and oral and tracheal mucosa. A biopsy specimen demonstrated a subepidermal bulla with mixed eosinophilic and neutrophilic, inflammatory infiltrate. Direct immunofluorescence showed linear IgA, IgG, and C3 depositions along the basement membrane zone, consistent with a diagnosis of childhood linear IgA bullous dermatosis (chronic bullous dermatosis of childhood). The skin disease was controlled with combined prednisone and dapsone. This is the youngest reported patient with the disease. Linear IgA bullous dermatosis should be considered in the differential diagnosis of blistering diseases of the newborn, and immunofluorescence should be performed on a skin biopsy specimen.

  10. Synergistic effect of mixed neutron and gamma irradiation in bipolar operational amplifier OP07

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Liu, E-mail: liuyan@nint.ac.cn [State Key Laboratory of Intense Pulsed Irradiation Simulation and Effect, Northwest Institute of Nuclear Technology, P.O.Box 69-10, Xi’an 710024 (China); School of Nuclear Science and Technology, Xi’an Jiaotong University, Xi’an 710049 (China); Wei, Chen; Shanchao, Yang; Xiaoming, Jin [State Key Laboratory of Intense Pulsed Irradiation Simulation and Effect, Northwest Institute of Nuclear Technology, P.O.Box 69-10, Xi’an 710024 (China); Chaohui, He [School of Nuclear Science and Technology, Xi’an Jiaotong University, Xi’an 710049 (China)

    2016-09-21

    This paper presents the synergistic effects in bipolar operational amplifier OP07. The radiation effects are studied by neutron beam, gamma ray, and mixed neutron/gamma ray environments. The characterateristics of the synergistic effects are studied through comparison of different experiment results. The results show that the bipolar operational amplifier OP07 exhibited significant synergistic effects in the mixed neutron and gamma irradiation. The bipolar transistor is identified as the most radiation sensitive unit of the operational amplifier. In this paper, a series of simulations are performed on bipolar transistors in different radiation environments. In the theoretical simulation, the geometric model and calculations based on the Medici toolkit are built to study the radiation effects in bipolar components. The effect of mixed neutron and gamma irradiation is simulated based on the understanding of the underlying mechanisms of radiation effects in bipolar transistors. The simulated results agree well with the experimental data. The results of the experiments and simulation indicate that the radiation effects in the bipolar devices subjected to mixed neutron and gamma environments is not a simple combination of total ionizing dose (TID) effects and displacement damage. The data suggests that the TID effect could enhance the displacement damage. The synergistic effect should not be neglected in complex radiation environments.

  11. Effect of mixing rule boundary conditions on high pressure (liquid + liquid) equilibrium prediction

    International Nuclear Information System (INIS)

    Hsieh, Min-Kang; Lin, Shiang-Tai

    2012-01-01

    Highlights: ► Prediction of LLE from the combined use of EOS and liquid model are examined. ► The mixing rule used affects the predicted pressure dependence of LLE. ► MHV1 mixing rule predicts decent LLE at low pressures. ► WS mixing rule predicts more accurate excess volume and LLE at high pressures. ► The hybrid of MHV1 and WS mixing rule gives overall the best predictions. - Abstract: We examine the prediction of high pressure (liquid + liquid) equilibrium (LLE) from the Peng–Robinson equation with three excess Gibbs free energy (G ex )-based mixing rules (MR): the first order modified Huron–Vidal (MHV1), the Wong–Sandler (WS), and a hybrid of these two (referred to as G ex B 2 ). These mixing rules differ by the boundary conditions used for determination of the temperature and composition dependence of parameters a and b in the PR EOS. The condition of matching the excess Gibbs free energy from the EOS at zero pressure to that from the G ex model, used in MHV1 and G ex B 2 MR, leads to a similar miscibility gap from PR EOS and the G ex model used. On the other hand, the condition of matching excess Helmholtz energy from the EOS at infinite pressure to that from the G ex model, used in the WS MR, shows remarkable deviations. The condition of quadratic composition dependence in the second virial coefficient (B 2 ), used in WS and G ex B 2 MR, allows for both positive and negative values in the molar excess volume. Depending on the mixture, either the increase or decrease of the miscibility gap with pressure can be observed when the WS or the G ex B 2 MR is used. The condition of linear combination of molecular sizes of each component used in the MHV1 MR, however, often leads to small, positive molar excess volumes. As a consequence, the predicted LLE from using the MHV1 MR are insensitive to pressure. Therefore, we find that the G ex B 2 mixing rule provides the best predictive power for the LLE over a wide range of temperature and pressure.

  12. Multi-objective parametric optimization of powder mixed electro ...

    Indian Academy of Sciences (India)

    Multiple linear regression models have ... surface optimization scheme to select the parameters in powder mixed EDM process. Keskin ... Genetic algorithm (GA) is a subclass of population based stochastic search procedure which is.

  13. Dynamical Casimir effect on a cavity with mixed boundary conditions

    International Nuclear Information System (INIS)

    Alves, Danilo T.; Farina, Carlos; Maia Neto, Paulo Americo

    2002-01-01

    The most well-known mechanical effect related to the quantum vacuum is the Casimir force between two mirrors at rest. A new effect appears when the mirrors are set to move. In this case, the vacuum field may exert a dissipative force, damping the motion. As a consequence of energy conservation, there will be creation of real particles. If the motion is non-relativistic and has a small amplitude, the dynamical Casimir force can be found via a perturbative method proposed by Ford and Vilenkin. Using their technique, the electromagnetic dynamical Casimir problem, considered when the oscillating cavity is formed by two parallel plates of the same nature (perfectly conducting or perfectly permeable), can be divided into two separated boundary condition problems, namely: one involving Dirichlet BC, related to the transverse electric polarization and the other involving a Neumann BC, related to the transverse magnetic mode. The case of conducting plates can be found in the literature. However, another interesting case, the mixed oscillating cavity where the plates are of different nature, namely, a perfectly conducting plate and a perfectly permeable one (Boyer plates), has not been studied yet. We show that,for this case, the transverse electric models will be related to mixed boundary conditions: Dirichlet-like BC at the conducting plate and Neumann-like BC at the permeable plate. Analogously, the magnetic modes are related to a Neumann BC at the conducting plate and to a Dirichlet BC at the permeable one. As a first step before attacking the three-dimensional electromagnetic problem with mixed BC, we present here a simpler model: a one-dimensional cavity, where a massless scalar field is submitted to mixed (Dirichlet-Neumann) BC. For simplicity, we consider a non-relativistic motion for the conducting wall (Dirichlet BC) and suppose that the perfectly permeable wall (Neumann BC) is at rest. From this model we can extract insights about the dynamical Casimir

  14. Linear stability analysis and nonlinear simulation of the channeling effect on viscous fingering instability in miscible displacement

    Science.gov (United States)

    Shahnazari, M. R.; Maleka Ashtiani, I.; Saberi, A.

    2018-03-01

    In this paper, the effect of channeling on viscous fingering instability of miscible displacement in porous media is studied. In fact, channeling is introduced as a solution to stabilize the viscous fingering instability. In this solution, narrow channels were placed next to the walls, and by considering an exponential function to model the channeling effect, a heterogeneous media is assumed. In linear stability analysis, the governing equations are transferred to Fourier space, and by introducing a novel numerical method, the transferred equations are analyzed. The growth rate based on the wave number diagram has been drawn up in three sections of the medium. It is found that the flow becomes more stable at the center and unstable along the walls when the permeability ratio is increased. Also when the permeability ratio is approximately equal to one, the channeling has no significant effect. In nonlinear simulations, by using stream function and vortices, new equations have been rewritten and it is shown that channeling has a profound effect on the growth of the fingers and mechanisms. In addition to the superposition of velocity vectors and concentration contours, the development of instability is investigated using the mixing length and sweep efficiency diagram. The results show that although channeling reduces instability, it increases the displacement process time.

  15. A note on the use of multiple linear regression in molecular ecology.

    Science.gov (United States)

    Frasier, Timothy R

    2016-03-01

    Multiple linear regression analyses (also often referred to as generalized linear models--GLMs, or generalized linear mixed models--GLMMs) are widely used in the analysis of data in molecular ecology, often to assess the relative effects of genetic characteristics on individual fitness or traits, or how environmental characteristics influence patterns of genetic differentiation. However, the coefficients resulting from multiple regression analyses are sometimes misinterpreted, which can lead to incorrect interpretations and conclusions within individual studies, and can propagate to wider-spread errors in the general understanding of a topic. The primary issue revolves around the interpretation of coefficients for independent variables when interaction terms are also included in the analyses. In this scenario, the coefficients associated with each independent variable are often interpreted as the independent effect of each predictor variable on the predicted variable. However, this interpretation is incorrect. The correct interpretation is that these coefficients represent the effect of each predictor variable on the predicted variable when all other predictor variables are zero. This difference may sound subtle, but the ramifications cannot be overstated. Here, my goals are to raise awareness of this issue, to demonstrate and emphasize the problems that can result and to provide alternative approaches for obtaining the desired information. © 2015 John Wiley & Sons Ltd.

  16. Mixed emotions across the adult life span in the United States

    Science.gov (United States)

    Schneider, Stefan; Stone, Arthur A.

    2015-01-01

    Mixed emotions involve the co-occurrence of positive and negative affect, such that people feel happy and sad at the same time. The purpose of the present study was to investigate age-related differences in the experience of mixed emotions across the adult life span in two nationally representative samples of U.S. residents. Data collected by the Princeton Affect and Time Survey (PATS, n = 3,948) and by the 2010 Wellbeing Module of the American Time Use Survey (ATUS, n = 12,828) were analyzed. In both surveys, respondents (aged 15 years or older) provided a detailed time diary about the preceding day and rated their happiness and sadness for three of the day's episodes. From these reports, three different indices of mixed emotions were derived. Results indicated small, but robust, increases in mixed emotions with age. Linear age increases were consistently evident in both PATS and ATUS, and replicated across the different indices of mixed emotions. There was no significant evidence for curvilinear age trends in either study. Several sociodemographic factors that could plausibly explain age-differences in mixed emotions (e.g., retirement, disability) did not alter the age-effects. The present study adds to the growing literature documenting vital changes in the complexity of emotional experience over the lifespan. PMID:25894487

  17. Direct and Maternal Additive Effects on Rabbit Growth and Linear ...

    African Journals Online (AJOL)

    Growth and linear body measurements of rabbits which consisted of 17 ew Zealand White (ZW), 19 Chinchilla (CH), 29 ZW x CH and 33 CH x ZW kittens were compared. The aim of the experiment was to evaluate the crossbreeding effects (i.e direct and maternal additive effect) for growth (individual body weight, IBW) and ...

  18. Analysis of oligonucleotide array experiments with repeated measures using mixed models

    Directory of Open Access Journals (Sweden)

    Getchell Thomas V

    2004-12-01

    Full Text Available Abstract Background Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients with Alzheimer's disease or absence (Control of the disease, and brain regions including olfactory bulb (OB or cerebellum (CER. In the design considered in this manuscript, OB and CER are repeated measurements from the same subject and, hence, are correlated. It is critical to identify sources of variability in the analysis of oligonucleotide array experiments with repeated measures and correlations among data points have to be considered. In addition, multiple testing problems are more complicated in experiments with multi-level treatments or treatment combinations. Results In this study we adopted a linear mixed model to analyze oligonucleotide array experiments with repeated measures. We first construct a generalized F test to select differentially expressed genes. The Benjamini and Hochberg (BH procedure of controlling false discovery rate (FDR at 5% was applied to the P values of the generalized F test. For those genes with significant generalized F test, we then categorize them based on whether the interaction terms were significant or not at the α-level (αnew = 0.0033 determined by the FDR procedure. Since simple effects may be examined for the genes with significant interaction effect, we adopt the protected Fisher's least significant difference test (LSD procedure at the level of αnew to control the family-wise error rate (FWER for each gene examined. Conclusions A linear mixed model is appropriate for analysis of oligonucleotide array experiments with repeated measures. We constructed a generalized F test to select differentially expressed genes, and then applied a specific sequence of tests to identify factorial effects. This sequence of tests applied was designed to control for gene based FWER.

  19. The effect of state medicaid case-mix payment on nursing home resident acuity.

    Science.gov (United States)

    Feng, Zhanlian; Grabowski, David C; Intrator, Orna; Mor, Vincent

    2006-08-01

    To examine the relationship between Medicaid case-mix payment and nursing home resident acuity. Longitudinal Minimum Data Set (MDS) resident assessments from 1999 to 2002 and Online Survey Certification and Reporting (OSCAR) data from 1996 to 2002, for all freestanding nursing homes in the 48 contiguous U.S. states. We used a facility fixed-effects model to examine the effect of introducing state case-mix payment on changes in nursing home case-mix acuity. Facility acuity was measured by aggregating the nursing case-mix index (NCMI) from the MDS using the Resource Utilization Group (Version III) resident classification system, separately for new admits and long-stay residents, and by an OSCAR-derived index combining a range of activity of daily living dependencies and special treatment measures. We followed facilities over the study period to create a longitudinal data file based on the MDS and OSCAR, respectively, and linked facilities with longitudinal data on state case-mix payment policies for the same period. Across three acuity measures and two data sources, we found that states shifting to case-mix payment increased nursing home acuity levels over the study period. Specifically, we observed a 2.5 percent increase in the average acuity of new admits and a 1.3 to 1.4 percent increase in the acuity of long-stay residents, following the introduction of case-mix payment. The adoption of case-mix payment increased access to care for higher acuity Medicaid residents.

  20. Determining influence of four-wave mixing effect on quantum key distribution

    International Nuclear Information System (INIS)

    Vavulin, D N; Egorov, V I; Gleim, A V; Chivilikhin, S A

    2014-01-01

    We consider the possibility of multiplexing the classical and quantum signals in a quantum cryptography system with optical fiber used as a transmission medium. If the quantum signal is located at a frequency close to the frequency of classical signals, a set of nonlinear effects such as FWM (four-wave mixing) and Raman scattering is observed. The impact of four-wave mixing (FWM) effect on error level is described and analyzed in this work in case of large frequency diversity between classical and quantum signals. It is shown that the influence of FWM is negligible for convenient quantum key distribution

  1. Linear and non-linear energy barriers in systems of interacting single-domain ferromagnetic particles

    International Nuclear Information System (INIS)

    Petrila, Iulian; Bodale, Ilie; Rotarescu, Cristian; Stancu, Alexandru

    2011-01-01

    A comparative analysis between linear and non-linear energy barriers used for modeling statistical thermally-excited ferromagnetic systems is presented. The linear energy barrier is obtained by new symmetry considerations about the anisotropy energy and the link with the non-linear energy barrier is also presented. For a relevant analysis we compare the effects of linear and non-linear energy barriers implemented in two different models: Preisach-Neel and Ising-Metropolis. The differences between energy barriers which are reflected in different coercive field dependence of the temperature are also presented. -- Highlights: → The linear energy barrier is obtained from symmetry considerations. → The linear and non-linear energy barriers are calibrated and implemented in Preisach-Neel and Ising-Metropolis models. → The temperature and time effects of the linear and non-linear energy barriers are analyzed.

  2. effects of mixed of mixed of mixed alkaline earth oxides in potash

    African Journals Online (AJOL)

    eobe

    Si, P) are network formers, and that materials whose. Nigerian ... made by mixing sand (SiO2), potassium carbonates. (K2Co3) .... The edges of the glass were grounded using ..... surface energies of minerals; theoritical estimate for oxides ...

  3. Predictors for physical activity in adolescent girls using statistical shrinkage techniques for hierarchical longitudinal mixed effects models.

    Directory of Open Access Journals (Sweden)

    Edward M Grant

    Full Text Available We examined associations among longitudinal, multilevel variables and girls' physical activity to determine the important predictors for physical activity change at different adolescent ages. The Trial of Activity for Adolescent Girls 2 study (Maryland contributed participants from 8th (2009 to 11th grade (2011 (n=561. Questionnaires were used to obtain demographic, and psychosocial information (individual- and social-level variables; height, weight, and triceps skinfold to assess body composition; interviews and surveys for school-level data; and self-report for neighborhood-level variables. Moderate to vigorous physical activity minutes were assessed from accelerometers. A doubly regularized linear mixed effects model was used for the longitudinal multilevel data to identify the most important covariates for physical activity. Three fixed effects at the individual level and one random effect at the school level were chosen from an initial total of 66 variables, consisting of 47 fixed effects and 19 random effects variables, in additional to the time effect. Self-management strategies, perceived barriers, and social support from friends were the three selected fixed effects, and whether intramural or interscholastic programs were offered in middle school was the selected random effect. Psychosocial factors and friend support, plus a school's physical activity environment, affect adolescent girl's moderate to vigorous physical activity longitudinally.

  4. Global non-linear effect of temperature on economic production.

    Science.gov (United States)

    Burke, Marshall; Hsiang, Solomon M; Miguel, Edward

    2015-11-12

    Growing evidence demonstrates that climatic conditions can have a profound impact on the functioning of modern human societies, but effects on economic activity appear inconsistent. Fundamental productive elements of modern economies, such as workers and crops, exhibit highly non-linear responses to local temperature even in wealthy countries. In contrast, aggregate macroeconomic productivity of entire wealthy countries is reported not to respond to temperature, while poor countries respond only linearly. Resolving this conflict between micro and macro observations is critical to understanding the role of wealth in coupled human-natural systems and to anticipating the global impact of climate change. Here we unify these seemingly contradictory results by accounting for non-linearity at the macro scale. We show that overall economic productivity is non-linear in temperature for all countries, with productivity peaking at an annual average temperature of 13 °C and declining strongly at higher temperatures. The relationship is globally generalizable, unchanged since 1960, and apparent for agricultural and non-agricultural activity in both rich and poor countries. These results provide the first evidence that economic activity in all regions is coupled to the global climate and establish a new empirical foundation for modelling economic loss in response to climate change, with important implications. If future adaptation mimics past adaptation, unmitigated warming is expected to reshape the global economy by reducing average global incomes roughly 23% by 2100 and widening global income inequality, relative to scenarios without climate change. In contrast to prior estimates, expected global losses are approximately linear in global mean temperature, with median losses many times larger than leading models indicate.

  5. Global non-linear effect of temperature on economic production

    Science.gov (United States)

    Burke, Marshall; Hsiang, Solomon M.; Miguel, Edward

    2015-11-01

    Growing evidence demonstrates that climatic conditions can have a profound impact on the functioning of modern human societies, but effects on economic activity appear inconsistent. Fundamental productive elements of modern economies, such as workers and crops, exhibit highly non-linear responses to local temperature even in wealthy countries. In contrast, aggregate macroeconomic productivity of entire wealthy countries is reported not to respond to temperature, while poor countries respond only linearly. Resolving this conflict between micro and macro observations is critical to understanding the role of wealth in coupled human-natural systems and to anticipating the global impact of climate change. Here we unify these seemingly contradictory results by accounting for non-linearity at the macro scale. We show that overall economic productivity is non-linear in temperature for all countries, with productivity peaking at an annual average temperature of 13 °C and declining strongly at higher temperatures. The relationship is globally generalizable, unchanged since 1960, and apparent for agricultural and non-agricultural activity in both rich and poor countries. These results provide the first evidence that economic activity in all regions is coupled to the global climate and establish a new empirical foundation for modelling economic loss in response to climate change, with important implications. If future adaptation mimics past adaptation, unmitigated warming is expected to reshape the global economy by reducing average global incomes roughly 23% by 2100 and widening global income inequality, relative to scenarios without climate change. In contrast to prior estimates, expected global losses are approximately linear in global mean temperature, with median losses many times larger than leading models indicate.

  6. Mixtures of Berkson and classical covariate measurement error in the linear mixed model: Bias analysis and application to a study on ultrafine particles.

    Science.gov (United States)

    Deffner, Veronika; Küchenhoff, Helmut; Breitner, Susanne; Schneider, Alexandra; Cyrys, Josef; Peters, Annette

    2018-03-13

    The ultrafine particle measurements in the Augsburger Umweltstudie, a panel study conducted in Augsburg, Germany, exhibit measurement error from various sources. Measurements of mobile devices show classical possibly individual-specific measurement error; Berkson-type error, which may also vary individually, occurs, if measurements of fixed monitoring stations are used. The combination of fixed site and individual exposure measurements results in a mixture of the two error types. We extended existing bias analysis approaches to linear mixed models with a complex error structure including individual-specific error components, autocorrelated errors, and a mixture of classical and Berkson error. Theoretical considerations and simulation results show, that autocorrelation may severely change the attenuation of the effect estimations. Furthermore, unbalanced designs and the inclusion of confounding variables influence the degree of attenuation. Bias correction with the method of moments using data with mixture measurement error partially yielded better results compared to the usage of incomplete data with classical error. Confidence intervals (CIs) based on the delta method achieved better coverage probabilities than those based on Bootstrap samples. Moreover, we present the application of these new methods to heart rate measurements within the Augsburger Umweltstudie: the corrected effect estimates were slightly higher than their naive equivalents. The substantial measurement error of ultrafine particle measurements has little impact on the results. The developed methodology is generally applicable to longitudinal data with measurement error. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. The roll-up and merging of coherent structures in shallow mixing layers

    International Nuclear Information System (INIS)

    Lam, M. Y.; Ghidaoui, M. S.; Kolyshkin, A. A.

    2016-01-01

    The current study seeks a fundamental explanation to the development of two-dimensional coherent structures (2DCSs) in shallow mixing layers. A nonlinear numerical model based on the depth-averaged shallow water equations is used to investigate the temporal evolution of shallow mixing layers, where the mapping from temporal to spatial results is made using the velocity at the center of the mixing layers. The flow is periodic in the streamwise direction. Transmissive boundary conditions are used in the cross-stream boundaries to prevent reflections. Numerical results are compared to linear stability analysis, mean-field theory, and secondary stability analysis. Results suggest that the onset and development of 2DCS in shallow mixing layers are the result of a sequence of instabilities governed by linear theory, mean-field theory, and secondary stability theory. The linear instability of the shearing velocity gradient gives the onset of 2DCS. When the perturbations reach a certain amplitude, the flow field of the perturbations changes from a wavy shape to a vortical (2DCS) structure because of nonlinearity. The development of the vertical 2DCS does not appear to follow weakly nonlinear theory; instead, it follows mean-field theory. After the formation of 2DCS, separate 2DCSs merge to form larger 2DCS. In this way, 2DCSs grow and shallow mixing layers develop and grow in scale. The merging of 2DCS in shallow mixing layers is shown to be caused by the secondary instability of the 2DCS. Eventually 2DCSs are dissipated by bed friction. The sequence of instabilities can cause the upscaling of the turbulent kinetic energy in shallow mixing layers.

  8. Effect of Low-Energy Linear Shockwave Therapy on Erectile Dysfunction

    DEFF Research Database (Denmark)

    Fojecki, Grzegorz L; Thiessen, Stefan; Osther, Palle Jørn Sloth

    2017-01-01

    INTRODUCTION: Previous studies have shown that focal low-energy extracorporeal shockwave therapy (Li-ESWT) can have a positive effect in men with erectile dysfunction (ED). Linear Li-ESWT (LLi-ESWT) for ED has not been previously assessed in a randomized trial. AIM: To evaluate the treatment...... MEASURES: The primary outcome measurement was an increase of at least five points on the IIEF-EF score. The secondary outcome measurement was an increased EHS score to at least 3 in men with a score no higher than 2 at baseline. Data were analyzed by linear and logistic regression. RESULTS: Mean IIEF...

  9. Chaotic mixing by microswimmers moving on quasiperiodic orbits

    Science.gov (United States)

    Jalali, Mir Abbas; Khoshnood, Atefeh; Alam, Mohammad-Reza

    2015-11-01

    Life on the Earth is strongly dependent upon mixing across a vast range of scales. For example, mixing distributes nutrients for microorganisms in aquatic environments, and balances the spatial energy distribution in the oceans and the atmosphere. From industrial point of view, mixing is essential in many microfluidic processes and lab-on-a-chip operations, polymer engineering, pharmaceutics, food engineering, petroleum engineering, and biotechnology. Efficient mixing, typically characterized by chaotic advection, is hard to achieve in low Reynolds number conditions because of the linear nature of the Stokes equation that governs the motion. We report the first demonstration of chaotic mixing induced by a microswimmer that strokes on quasiperiodic orbits with multi-loop turning paths. Our findings can be utilized to understand the interactions of microorganisms with their environments, and to design autonomous robotic mixers that can sweep and mix an entire volume of complex-geometry containers.

  10. Effect of waste plastic bottles on the stiffness and fatigue properties of modified asphalt mixes

    International Nuclear Information System (INIS)

    Modarres, Amir; Hamedi, Hamidreza

    2014-01-01

    Highlights: • PET reduced the mix stiffness at both temperatures of 5 and 25 °C. • PET improved the fatigue behavior at both testing temperatures. • At more than 210 microstrain, adding temperature resulted in higher fatigue life. • SBS modified mixes showed better fatigue behavior than PET modified ones. • Overall PET had comparable effects to SBS on the stiffness and fatigue behavior. - Abstract: Nowadays, the use of recycled waste materials as modifier additives in asphalt mixes could have several economic and environmental benefits. The main purpose of this research was to investigate the effect of waste plastic bottles (Polyethylene Terephthalate (PET)) on the stiffness and specially fatigue properties of asphalt mixes at two different temperatures of 5 and 20 °C. Likewise, the effect of PET was compared to styrene butadiene styrene (SBS) which is a conventional polymer additive which has been vastly used to modify asphalt mixes. Different PET contents (2–10% by weight of bitumen) were added directly to mixture as the method of dry process. Then the resilient modulus and fatigue tests were performed on cylindrical specimens with indirect tensile loading procedure. Overall, the mix stiffness reduced by increasing the PET content. Although stiffness of asphalt mix initially increased by adding lower amount of PET. Based on the results of resilient modulus test, the stiffness of PET modified mix was acceptable and warranted the proper deformation characteristics of these mixes at heavy loading conditions. At both temperatures, PET improved the fatigue behavior of studied mixes. PET modified mixes revealed comparable stiffness and fatigue behavior to SBS at 20 °C. However, at 5 °C the fatigue life of SBS modified mixes was to some extent higher than that of PET modified ones especially at higher strain levels of 200 microstrain

  11. Effect of Linear and Non-linear Resistance Exercise on Anaerobic Performance among Young Women

    OpenAIRE

    Homa Esmaeili; Ali Reza Amani; Taher Afsharnezhad

    2015-01-01

    The main goals of strength training are improving muscle strength, power and muscle endurance. The objective of the current study is to compare two popular linear and nonlinear resistance exercises interventions on the anaerobic power.  Previous research has shown differences intervention by the linear and non-linear resistance exercise in performance and strength in male athletes. By the way there are not enough data regarding female subjects. Eighteen young women subjects participated in th...

  12. The Non-Linear Effect of Corporate Taxes on Economic Growth

    Directory of Open Access Journals (Sweden)

    Huňady Ján

    2015-03-01

    Full Text Available The paper deals with the problem of taxation and its potential impact on economic growth and presents some new empirical insights into this topic. The main aim of the paper is to verify an assumed nonlinear impact of corporate tax rates on economic growth. Based on the theory of public finance and taxation, we hypothesize that at relatively low tax rates it is possible that the impact of taxation on economic growth become slightly positive. On the other hand when the tax rates are higher a negative impact of taxation on economic growth could be expected. Despite the fact that the most of the existing studies find a negative linear relationship between these variables, we can also find strong support for a non-linear relationship from several theoretical models as well as some empirical studies. Based on panel data fixed-effects econometric models, we, as well, find empirical evidence for a non-linear relationship between nominal and effective corporate tax rates and economic growth. Our data consists of annual observations for the period 1999 to 2011 for EU Member States. Based on the results, we also estimated the optimal level of the corporate tax rate in terms of maximizing economic growth in the average of the EU countries.

  13. Effect of Consuming Oat Bran Mixed in Water before a Meal on Glycemic Responses in Healthy Humans—A Pilot Study

    Directory of Open Access Journals (Sweden)

    Robert E. Steinert

    2016-08-01

    Full Text Available Background: Viscous dietary fibers including oat β-glucan are one of the most effective classes of functional food ingredients for reducing postprandial blood glucose. The mechanism of action is thought to be via an increase in viscosity of the stomach contents that delays gastric emptying and reduces mixing of food with digestive enzymes, which, in turn, retards glucose absorption. Previous studies suggest that taking viscous fibers separate from a meal may not be effective in reducing postprandial glycemia. Methods: We aimed to re-assess the effect of consuming a preload of a commercially available oat-bran (4.5, 13.6 or 27.3 g containing 22% of high molecular weight oat β-glucan (O22 (OatWell®22 mixed in water before a test-meal of white bread on glycemic responses in 10 healthy humans. Results: We found a significant effect of dose on blood glucose area under the curve (AUC (p = 0.006 with AUC after 27.3 g of O22 being significantly lower than white bread only. Linear regression analysis showed that each gram of oat β-glucan reduced glucose AUC by 4.35% ± 1.20% (r = 0.507, p = 0.0008, n = 40 and peak rise by 6.57% ± 1.49% (r = 0.582, p < 0.0001. Conclusion: These data suggest the use of oat bran as nutritional preload strategy in the management of postprandial glycemia.

  14. Linearization Technologies for Broadband Radio-Over-Fiber Transmission Systems

    Directory of Open Access Journals (Sweden)

    Xiupu Zhang

    2014-11-01

    Full Text Available Linearization technologies that can be used for linearizing RoF transmission are reviewed. Three main linearization methods, i.e. electrical analog linearization, optical linearization, and electrical digital linearization are presented and compared. Analog linearization can be achieved using analog predistortion circuits, and can be used for suppression of odd order nonlinear distortion components, such as third and fifth order. Optical linearization includes mixed-polarization, dual-wavelength, optical channelization and the others, implemented in optical domain, to suppress both even and odd order nonlinear distortion components, such as second and third order. Digital predistortion has been a widely used linearization method for RF power amplifiers. However, digital linearization that requires analog to digital converter is severely limited to hundreds of MHz bandwidth. Instead, analog and optical linearization provide broadband linearization with up to tens of GHz. Therefore, for broadband radio over fiber transmission that can be used for future broadband cloud radio access networks, analog and optical linearization are more appropriate than digital linearization. Generally speaking, both analog and optical linearization are able to improve spur-free dynamic range greater than 10 dB over tens of GHz. In order for current digital linearization to be used for broadband radio over fiber transmission, the reduced linearization complexity and increased linearization bandwidth are required. Moreover, some digital linearization methods in which the complexity can be reduced, such as Hammerstein type, may be more promising and require further investigation.

  15. Experiments on scalar mixing and transport

    International Nuclear Information System (INIS)

    Warhaft, Z.

    1993-01-01

    The author provides an overview of his recent work on passive (temperature) scalar mixing in both homogeneous and inhomogeneous turbulent flows. He shows that for homogeneous grid generated turbulence, in the presence of a linear temperature profile, the probability density function (pdf) of the temperature fluctuations has broad exponential tails, while the pdf of velocity is Gaussian. However, in the absence of a scalar gradient the pdf of temperature is Gaussian. This new result sheds insight into the fundamentals of turbulent mixing as well as to the nature of the velocity field. It is also shown that the spectrum of the temperature fluctuations has a scaling region that is consistent with Kolmogorov scaling although a similar scaling region is absent for the velocity field in this low Reynolds number flow. Finally, results concerning the mixing and dispersion of scalars in a jet are shown. Although initially the scalar mixing is strongly dependent on input conditions, the mixing is shown to be rapid and the correlation coefficient asymptotes to unity by x/D ∼ 20

  16. Impact of Grain Shape and Multiple Black Carbon Internal Mixing on Snow Albedo: Parameterization and Radiative Effect Analysis

    Science.gov (United States)

    He, Cenlin; Liou, Kuo-Nan; Takano, Yoshi; Yang, Ping; Qi, Ling; Chen, Fei

    2018-01-01

    We quantify the effects of grain shape and multiple black carbon (BC)-snow internal mixing on snow albedo by explicitly resolving shape and mixing structures. Nonspherical snow grains tend to have higher albedos than spheres with the same effective sizes, while the albedo difference due to shape effects increases with grain size, with up to 0.013 and 0.055 for effective radii of 1,000 μm at visible and near-infrared bands, respectively. BC-snow internal mixing reduces snow albedo at wavelengths external mixing, internal mixing enhances snow albedo reduction by a factor of 1.2-2.0 at visible wavelengths depending on BC concentration and snow shape. The opposite effects on albedo reductions due to snow grain nonsphericity and BC-snow internal mixing point toward a careful investigation of these two factors simultaneously in climate modeling. We further develop parameterizations for snow albedo and its reduction by accounting for grain shape and BC-snow internal/external mixing. Combining the parameterizations with BC-in-snow measurements in China, North America, and the Arctic, we estimate that nonspherical snow grains reduce BC-induced albedo radiative effects by up to 50% compared with spherical grains. Moreover, BC-snow internal mixing enhances the albedo effects by up to 30% (130%) for spherical (nonspherical) grains relative to external mixing. The overall uncertainty induced by snow shape and BC-snow mixing state is about 21-32%.

  17. Effect of high shear mixing parameters and degassing temperature on the morphology of epoxy-clay nanocomposites

    KAUST Repository

    Al-Qadhi, Muneer; Merah, N.; Mezghani, Khaled S.; Khan, Zafarullah; Gasem, Zuhair Mattoug Asad; Sougrat, Rachid

    2013-01-01

    Epoxy-clay nanocomposites were prepared by high shear mixing method using Nanomer I.30E nanoclay as nano-reinforcement in diglycidyl ether of bisphenol A (DGEBA). The effect of mixing speed and time on the nature and degree of clay dispersion were investigated by varying the mixing speed in the range of 500-8000 RPM and mixing time in the range of 15-90 minutes. The effect of degassing temperature on the morphology of the resultant nanocomposites was also studied. Scanning and transmission microscopy (SEM and TEM) along with x-ray diffraction (XRD) have been used to characterize the effect of shear mixing speed, mixing time and degassing temperature on the structure of the resultant nanocomposites. The SEM, TEM and XRD examinations demonstrated that the degree of clay dispersion was improved with increasing the high shear mixing speed and mixing time. The results showed that the optimum high shear mixing speed and mixing time were 6000 rpm and 60 min, respectively. It was observed that the structure of the nanocomposites that have been degassed at 65°C was dominated by ordered intercalated morphology while disordered intercalated with some exfoliated morphology was found for the sample degassed at 100°C for the first 2 hours of the degassing process. © (2013) Trans Tech Publications, Switzerland.

  18. Effect of flow rate distribution at the inlet on hydrodynamic mixing in narrow rectangular multi-channel

    International Nuclear Information System (INIS)

    Xu Jianjun; Chen Bingde; Wang Xiaojun

    2008-01-01

    Flow and heat transfer in the narrow rectangular multi-channel is widely en- countered in the engineering application, hydrodynamic mixing in the narrow rectangular multi-channel is one of the important concerns. With the help of the Computational Fluid Dynamics code CFX, the effect of flow rate distribution of the main channel at the inlet on hydrodynamic mixing in the narrow rectangular multi-channel is numerical simulated. The results show that the flow rate distributions at the inlet have a great effect on hydrodynamics mixing in multi-channel, the flow rate in the main channel doesn't change with increasing the axial mixing section when the average flow rate at the inlet is set. Hydrodynamic mixing will arise in the mixing section when the different ratio of the flow rate distribution at the inlet is set, and hydrodynamic mixing increases with the difference of the flow rate distribution at the inlet increase. The trend of the flow rate distribution of the main channel is consistent during the whole axial mixing section, and hydrodynamic mixing in former 4 mixing section is obvious. (authors)

  19. The Effect of Mixed-Age Classes in Sweden

    Science.gov (United States)

    Lindstrom, Elly-Ann; Lindahl, Erica

    2011-01-01

    Mixed-aged (MA) classes are a common phenomenon around the world. In Sweden, these types of classes increased rapidly during the 1980s and 1990s, despite the fact that existing empirical support for MA classes is weak. In this paper, the effect of attending an MA class during grades 4-6 on students' cognitive skills is estimated. Using a unique…

  20. Tests of the linearity assumption in the dose-effect relationship for radiation-induced cancer

    International Nuclear Information System (INIS)

    Cohen, A.F.; Cohen, B.L.

    1980-01-01

    The validity of the BEIR linear extrapolation to low doses of the dose-effect relationship for radiation induced cancer is tested by use of natural radiation making use of selectivity on type of cancer, smoking habits, sex, age group, geographic area and/or time period. For lung cancer, a linear interpolation between zero dose-zero effect and the data from radon-induced cancers in miners implies that the majority of all lung cancers among non-smokers are due to radon; since lung cancers in miners are mostly small-cell undifferentiated (SCU), a rather rare type in general, linearity over predicts the frequency of SCU lung cancers among non smokers by a factor of 10, and among non-smoking females age 25-44 by a factor of 24. Similarly, linearity predicts that the majority of all lung cancers early in this century were due to radon even after due consideration is given to cases missed by poor diagnostic efficiency (this matter is considered in some detail). For the 30-40 age range, linearity over predicts the total lung cancer rate at that time by a factor of 3-6; for SCU lung cancer, the over-prediction is by at least a factor of 10. Other causes of lung cancer are considered which further enhance the degree to which the linearity assumption over-estimates the effects of low level radiation. A similar analysis is applied to leukemia induced by natural radiation. It is concluded that the upper limit for this is not higher than estimates from the linearity hypothesis. (author)

  1. Effect of carbon on ion beam mixing of Fe-Ti bilayers

    Energy Technology Data Exchange (ETDEWEB)

    Hirvonen, J.P.; Nastasi, M.; Lappalainen, R.; Sickafus, K. (Los Alamos National Lab., NM (USA); Helsinki Univ. (Finland). Dept. of Physics; Los Alamos National Lab., NM (USA))

    1989-01-01

    The influence of implanted carbon on ion beam mixing of a Fe-Ti system was investigated. Carbon was introduced into bilayer samples by implanting {sup 13}C isotopes. The implantation energies were selected to set the mean range of carbon ions in either the iron or titanium layer. The effect of implanted carbon on 400 keV Ar ion mixing in the temperature range from 0 to 300{degree}C was studied using Rutherford backscattering spectroscopy at the energy of 5 MeV. Changes in carbon concentration profiles were probed utilizing the resonance of the nuclear reaction {sup 13}C(p,{gamma}){sup 14}N at the proton energy of 1.748 MeV. The measurements revealed that mixing was not affected by carbon implanted into the titanium layer. However, carbon in the iron layer remarkably retarded mixing at all temperatures investigated. Significant changes in carbon depth distributions were observed only when the sample with implanted carbon in the iron layer was mixed at 300{degree}C. These results are explained in terms of the enhanced mobility of carbon in an evaporated iron film which allows segregation to the interface. At low temperatures, however, vacancy-carbon interaction in iron may have a contribution to the retarded ion beam mixing. 19 refs., 3 figs.

  2. Non-linear effects and plasma heating by lower-hybrid waves in the Petula tokamak

    International Nuclear Information System (INIS)

    Briand, P.; Dupas, L.; Golovato, S.N.; Singh, C.M.; Melin, G.; Grelot, P.; Legardeur, R.; Zymanski, S.

    1979-01-01

    Lower hybrid waves were excited by a two-waveguide 'grill' (nsub(parallel) approximately 1-10, Esub(grill) approximately 3kVcm -1 , Psub(grill) approximately 5kWcm -2 ) at 1.25GHz, 3ms, 600kW. Plasma heating was observed separately as due to non-linear effects alone as well as to a combination of linear and non-linear mechanisms. (author)

  3. A Mathematical Programming Approach to the Optimal Sustainable Product Mix for the Process Industry

    Directory of Open Access Journals (Sweden)

    Noha M. Galal

    2015-09-01

    Full Text Available The increasing concerns about the environment and the depletion of natural resources are the main drivers for the growing interest in sustainability. Manufacturing operations are frequently considered to have an adverse effect on the environment. Hence, the sustainable operation of manufacturing facilities is a vital practice to ensure sustainability. The aim of this paper is to find the optimum product mix of a manufacturing facility to maximize its sustainability. A mixed integer non-linear programming model is developed to specify the product mix in order to maximize a proposed sustainability index (SI of a manufacturing facility. The sustainability index comprises the economic, environmental and social pillars of sustainability in a weighted form using the analytic hierarchy process (AHP. The model results allow the identification of the prospective improvements of manufacturing sustainability.

  4. New Delay-Dependent Robust Exponential Stability Criteria of LPD Neutral Systems with Mixed Time-Varying Delays and Nonlinear Perturbations

    Directory of Open Access Journals (Sweden)

    Sirada Pinjai

    2013-01-01

    Full Text Available This paper is concerned with the problem of robust exponential stability for linear parameter-dependent (LPD neutral systems with mixed time-varying delays and nonlinear perturbations. Based on a new parameter-dependent Lyapunov-Krasovskii functional, Leibniz-Newton formula, decomposition technique of coefficient matrix, free-weighting matrices, Cauchy’s inequality, modified version of Jensen’s inequality, model transformation, and linear matrix inequality technique, new delay-dependent robust exponential stability criteria are established in terms of linear matrix inequalities (LMIs. Numerical examples are given to show the effectiveness and less conservativeness of the proposed methods.

  5. Fuel-steel mixing and radial mesh effects in power excursion simulations

    International Nuclear Information System (INIS)

    Chen, X.-N.; Rineiski, A.; Gabrielli, F.; Andriolo, L.; Vezzoni, B.; Li, R.; Maschek, W.; Kiefhaber, E.

    2016-01-01

    Highlights: • Fuel-steel mixing and radial mesh effects are significant on power excursion. • The earliest power peak is reduced and retarded by these two effects. • Unprotected loss of coolant transients in ESFR core are calculated. - Abstract: This paper deals with SIMMER-III once-through simulations of the earliest power excursion initiated by an unprotected loss of flow (ULOF) in the Working Horse design of the European Sodium Cooled Fast Reactor (ESFR). Since the sodium void effect is strictly positive in this core and dominant in the transient, a power excursion is initiated by sodium boiling in the ULOF case. Two major effects, namely (1) reactivity effects due to fuel-steel mixing after melting and (2) the radial mesh size, which were not considered originally in SIMMER simulations for ESFR, are studied. The first effect concerns the reactivity difference between the heterogeneous fuel/clad/wrapper configuration and the homogeneous mixture of steel and fuel. The full core homogenization (due to melting) effect is −2 $, though a smaller effect takes place in case of partial core melting. The second effect is due to the SIMMER sub-assembly (SA) coarse mesh treatment, where a simultaneous sodium boiling onset in all SAs belonging to one ring leads to an overestimated reactivity ramp. For investigating the influence of fuel/steel mixing effects, a lumped “homogenization” reactivity feedback has been introduced, being proportional to the molten steel mass. For improving the coarse mesh treatment, we employ finer radial meshes to take the subchannel effects into account, where the side and interior channels have different coolant velocities and temperatures. The simulation results show that these two effects have significant impacts on the earliest power excursion after the sodium boiling.

  6. A comment on framing effects in linear public good games

    OpenAIRE

    Cartwright, Edward

    2016-01-01

    A number of recent papers have looked at framing effects in linear public good games. In this comment, I argue that, within this literature, the distinction between give-take and positive–negative framing effects has become blurred, and that this is a barrier towards understanding the experimental evidence on framing effects. To make these points, I first illustrate that frames can differ along both an externality and choice dimension. I then argue that the existing evidence is consistent wit...

  7. Dark matter as a non-linear effect of gravitation

    International Nuclear Information System (INIS)

    Maia, M.D.; Capistrano, A.J.S.

    2006-01-01

    The rotation curves of stars in disk galaxies are calculated with the Newtonian law of motion applied to a scalar potential derived from the geodesic equation, only, under the slow motion condition, the so-called Nearly Newtonian Gravity (NNG). A nearly Newtonian gravitational potential, Φ NN = -1/2 c 2 (1+g 44 ), is obtained, characterized by an exact solution of Einsteins equations, with the non-linear effects present in the component g 44 . This gravitational field lies somewhere between General Relativity and Newtonian Gravity. Therefore, Einsteins equations and the equivalence principle are preserved, but the general covariance is broken. The resulting curves are remarkably close to the observed rotation curves in spiral galaxies, suggesting that a substantial component of dark matter may be explained by the non-linearity of Einsteins equations. (author)

  8. Dose Rate Effects in Linear Bipolar Transistors

    Science.gov (United States)

    Johnston, Allan; Swimm, Randall; Harris, R. D.; Thorbourn, Dennis

    2011-01-01

    Dose rate effects are examined in linear bipolar transistors at high and low dose rates. At high dose rates, approximately 50% of the damage anneals at room temperature, even though these devices exhibit enhanced damage at low dose rate. The unexpected recovery of a significant fraction of the damage after tests at high dose rate requires changes in existing test standards. Tests at low temperature with a one-second radiation pulse width show that damage continues to increase for more than 3000 seconds afterward, consistent with predictions of the CTRW model for oxides with a thickness of 700 nm.

  9. A new algorithm for extended nonequilibrium molecular dynamics simulations of mixed flow

    NARCIS (Netherlands)

    Hunt, T.A.; Hunt, Thomas A.; Bernardi, Stefano; Todd, B.D.

    2010-01-01

    In this work, we develop a new algorithm for nonequilibrium molecular dynamics of fluids under planar mixed flow, a linear combination of planar elongational flow and planar Couette flow. To date, the only way of simulating mixed flow using nonequilibrium molecular dynamics techniques was to impose

  10. Disorder effects on free excitons in CdSsub(1-x)Sesub(x) mixed crystals

    International Nuclear Information System (INIS)

    Goede, O.; Hennig, D.; John, L.

    1979-01-01

    In CdSsub(1-x)Sesub(x) mixed crystals the energies and transition probability ratios for free A, B, and C excitons are obtained as a function of the composition x by reflection and emission measurements at 77 K. The observation of the disorder-allowed A(GAMMA 6 ) exciton transition, the bowing of the energy difference between A and C exciton, and the broadening of the exciton lines clearly demonstrate the importance of disorder effects in these mixed crystals. This conclusion is further supported by the stress-induced enhancement of the A(GAMMA 6 ) exciton transition probability by uniaxial stress parallel to the c-axis of the mixed crystals. The experimental results are discussed on the basis of an effective exciton Hamiltonian consisting of a quasi-cubic VCA-Hamiltonian for wurtzite-type mixed crystals and an additional lower-symmetric term which describes the disorder effects phenomenologically by two fluctuating crystal fields parallel and perpendicular to the c-axis, respectively. (author)

  11. A simulated Linear Mixture Model to Improve Classification Accuracy of Satellite Data Utilizing Degradation of Atmospheric Effect

    Directory of Open Access Journals (Sweden)

    WIDAD Elmahboub

    2005-02-01

    Full Text Available Researchers in remote sensing have attempted to increase the accuracy of land cover information extracted from remotely sensed imagery. Factors that influence the supervised and unsupervised classification accuracy are the presence of atmospheric effect and mixed pixel information. A linear mixture simulated model experiment is generated to simulate real world data with known end member spectral sets and class cover proportions (CCP. The CCP were initially generated by a random number generator and normalized to make the sum of the class proportions equal to 1.0 using MATLAB program. Random noise was intentionally added to pixel values using different combinations of noise levels to simulate a real world data set. The atmospheric scattering error is computed for each pixel value for three generated images with SPOT data. Accuracy can either be classified or misclassified. Results portrayed great improvement in classified accuracy, for example, in image 1, misclassified pixels due to atmospheric noise is 41 %. Subsequent to the degradation of atmospheric effect, the misclassified pixels were reduced to 4 %. We can conclude that accuracy of classification can be improved by degradation of atmospheric noise.

  12. Examples of mixed-effects modeling with crossed random effects and with binomial data

    NARCIS (Netherlands)

    Quené, H.; van den Bergh, H.

    2008-01-01

    Psycholinguistic data are often analyzed with repeated-measures analyses of variance (ANOVA), but this paper argues that mixed-effects (multilevel) models provide a better alternative method. First, models are discussed in which the two random factors of participants and items are crossed, and not

  13. Role of Statistical Random-Effects Linear Models in Personalized Medicine.

    Science.gov (United States)

    Diaz, Francisco J; Yeh, Hung-Wen; de Leon, Jose

    2012-03-01

    Some empirical studies and recent developments in pharmacokinetic theory suggest that statistical random-effects linear models are valuable tools that allow describing simultaneously patient populations as a whole and patients as individuals. This remarkable characteristic indicates that these models may be useful in the development of personalized medicine, which aims at finding treatment regimes that are appropriate for particular patients, not just appropriate for the average patient. In fact, published developments show that random-effects linear models may provide a solid theoretical framework for drug dosage individualization in chronic diseases. In particular, individualized dosages computed with these models by means of an empirical Bayesian approach may produce better results than dosages computed with some methods routinely used in therapeutic drug monitoring. This is further supported by published empirical and theoretical findings that show that random effects linear models may provide accurate representations of phase III and IV steady-state pharmacokinetic data, and may be useful for dosage computations. These models have applications in the design of clinical algorithms for drug dosage individualization in chronic diseases; in the computation of dose correction factors; computation of the minimum number of blood samples from a patient that are necessary for calculating an optimal individualized drug dosage in therapeutic drug monitoring; measure of the clinical importance of clinical, demographic, environmental or genetic covariates; study of drug-drug interactions in clinical settings; the implementation of computational tools for web-site-based evidence farming; design of pharmacogenomic studies; and in the development of a pharmacological theory of dosage individualization.

  14. Sfermion Precision Measurements at a Linear Collider

    CERN Document Server

    Freitas, A.; Ananthanarayan, B.; Bartl, A.; Blair, G.A.; Blochinger, C.; Boos, E.; Brandenburg, A.; Datta, A.; Djouadi, A.; Fraas, H.; Guasch, J.; Hesselbach, S.; Hidaka, K.; Hollik, W.; Kernreiter, T.; Maniatis, M.; von Manteuffel, A.; Martyn, H.U.; Miller, D.J.; Moortgat-Pick, Gudrid A.; Muhlleitner, M.; Nauenberg, U.; Kluge, Hannelies; Porod, W.; Sola, J.; Sopczak, A.; Stahl, A.; Weber, M.M.; Zerwas, P.M.

    2002-01-01

    At future e+- e- linear colliders, the event rates and clean signals of scalar fermion production - in particular for the scalar leptons - allow very precise measurements of their masses and couplings and the determination of their quantum numbers. Various methods are proposed for extracting these parameters from the data at the sfermion thresholds and in the continuum. At the same time, NLO radiative corrections and non-zero width effects have been calculated in order to match the experimental accuracy. The substantial mixing expected for the third generation sfermions opens up additional opportunities. Techniques are presented for determining potential CP-violating phases and for extracting tan(beta) from the stau sector, in particular at high values. The consequences of possible large mass differences in the stop and sbottom system are explored in dedicated analyses.

  15. Sfermion precision measurements at a linear collider

    International Nuclear Information System (INIS)

    Freitas, A.; Ananthanarayan, B.; Bartl, A.; Blair, G.; Bloechinger, C.; Boos, E.; Brandenburg, A.; Datta, A.; Djouadi, A.; Fraas, H.; Guasch, J.; Hesselbach, S.; Hidaka, K.; Hollik, W.; Kernreiter, T.; Maniatis, M.; Manteuffel, A. von; Martyn, H.-U.; Miller, D.J.; Moortgat-Pick, G.; Muehlleitner, M.; Nauenberg, U.; Nowak, H.; Porod, W.; Sola, J.; Sopczak, A.; Stahl, A.; Weber, M.M.; Zerwas, P.M.

    2003-01-01

    At prospective e ± e - linear colliders, the large cross-sections and clean signals of scalar fermion production--in particular for the scalar leptons - allow very precise measurements of their masses and couplings and the determination of their quantum numbers. Various methods are proposed for extracting these parameters from the data at the sfermion thresholds and in the continuum. At the same time, NLO radiative corrections and non-zero width effects have been calculated in order to match the experimental accuracy. The substantial mixing expected in the third generation opens up additional opportunities. Techniques are presented for determining potential CP-violating phases and for extracting tan β from the stau sector, in particular at high values. The consequences of possible large mass differences in the stop and sbottom system are explored in dedicated analyses

  16. Sfermion precision measurements at a linear collider

    International Nuclear Information System (INIS)

    Freitas, A.

    2003-01-01

    At future e + e - linear colliders, the event rates and clean signals of scalar fermion production--in particular for the scalar leptons--allow very precise measurements of their masses and couplings and the determination of their quantum numbers. Various methods are proposed for extracting these parameters from the data at the sfermion thresholds and in the continuum. At the same time, NLO radiative corrections and non-zero width effects have been calculated in order to match the experimental accuracy. The substantial mixing expected for the third generation sfermions opens up additional opportunities. Techniques are presented for determining potential CP-violating phases and for extracting tan β from the stau sector, in particular at high values. The consequences of possible large mass differences in the stop and sbottom system are explored in dedicated analyses

  17. Rehearsal Strategies Can Enlarge or Diminish the Spacing Effect: Pure versus Mixed Lists and Encoding Strategy

    Science.gov (United States)

    Delaney, Peter F.; Verkoeijen, Peter P. J. L.

    2009-01-01

    Using 5 experiments, the authors explored the dependency of spacing effects on rehearsal patterns. Encouraging rehearsal borrowing produced opposing effects on mixed lists (containing both spaced and massed repetitions) and pure lists (containing only one or the other), magnifying spacing effects on mixed lists but diminishing spacing effects on…

  18. A brief introduction to mixed effects modelling and multi-model inference in ecology.

    Science.gov (United States)

    Harrison, Xavier A; Donaldson, Lynda; Correa-Cano, Maria Eugenia; Evans, Julian; Fisher, David N; Goodwin, Cecily E D; Robinson, Beth S; Hodgson, David J; Inger, Richard

    2018-01-01

    The use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference requires that practitioners know how and when to apply these tools. Here, we provide a general overview of current methods for the application of LMMs to biological data, and highlight the typical pitfalls that can be encountered in the statistical modelling process. We tackle several issues regarding methods of model selection, with particular reference to the use of information theory and multi-model inference in ecology. We offer practical solutions and direct the reader to key references that provide further technical detail for those seeking a deeper understanding. This overview should serve as a widely accessible code of best practice for applying LMMs to complex biological problems and model structures, and in doing so improve the robustness of conclusions drawn from studies investigating ecological and evolutionary questions.

  19. Social mix policies in Paris: discourses, policies and social effects.

    Science.gov (United States)

    Bacqué, Marie-Hélène; Fijalkow, Yankel; Launay, Lydie; Vermeersch, Stéphanie

    2011-01-01

    Since the 1980s, the issue of social mix has become a public policy category in France. Enshrined in legislation, yet remaining controversial, it represents a major premise on which housing policies have been reconfigured. The concept of social mix is essentially based on who lives where, but it is also evoked in the context of urban renewal schemes for social housing estates, as well as in relation to new-build developments. A study of the bases of social mix policies conducted in Paris since 2001 in the context of the embourgeoisement of the capital shows the fundamental role of social housing stock. The City Council has become involved in policy decisions about both the location and the allocation of social housing. Particular attention has been paid to the middle classes in the name of the principle of ‘balancing the population’. In order to measure the effects of the policy, this article relies on an analysis of two City of Paris schemes that have the stated intent of creating social mix. One of these schemes consists of redeveloping a working-class neighbourhood, Goutte d'Or, while the other involves the new acquisition of social housing in various more affluent neighbourhoods in the capital. This comparative study of the population shows that, whether in a neighbourhood poised for gentrification or in a more affluent neighbourhood, this policy has major effects on forms of local social cohesion, setting in motion individual trajectories and reshaping social and/or ethnic identities.

  20. Influence of thermal effects induced by nonlinear absorption on four-wave mixing in silicon waveguides

    DEFF Research Database (Denmark)

    Pu, Minhao; Chen, Yaohui; Yvind, Kresten

    2014-01-01

    Influence of thermal effects induced by nonlinear absorption on four-wave mixing in silicon waveguides is investigated. A conversion bandwidth reduction up to 63% is observed in simulation due to the thermal effects.......Influence of thermal effects induced by nonlinear absorption on four-wave mixing in silicon waveguides is investigated. A conversion bandwidth reduction up to 63% is observed in simulation due to the thermal effects....

  1. Effect on Non-Newtonian Rheology on Mixing in Taylor-Couette Flow

    Science.gov (United States)

    Cagney, Neil; Balabani, Stavroula

    2017-11-01

    Mixing processes within many industry applications are strongly affected by the rheology of the working fluid. This is particularly relevant for pharmaceutical, food and waste treatment industries, where the working fluids are often strongly non-Newtonian, and significant variations in rheology between batches may occur. We approach the question of how rheology affects mixing by focussing on a the classical case of Taylor-Couette flow, which exhibits a number of instabilities and flow regimes as a function of Reynolds number. We examine Taylor-Couette flow generated for a range of aqueous solutions of xantham gum or corn starch, such that the rheology varies from shear-thinning to shear-thickening. For each case, we measure the power consumption using a torque meter and the flow field using high speed, time-resolved Particle-Image Velocimetry. The mixing characteristics are quantified using a number of Lagrangian and Eulerian approaches, including the coarse grained density method and vortex strength. By comparing these metrics to the power number, we discuss how the mixing efficiency (ratio of mixing effectiveness to power input) varies with the flow index of the fluid.

  2. CFD simulation for thermal mixing of a SMART flow mixing header assembly

    International Nuclear Information System (INIS)

    Kim, Young In; Bae, Youngmin; Chung, Young Jong; Kim, Keung Koo

    2015-01-01

    Highlights: • Thermal mixing performance of a FMHA installed in SMART is investigated numerically. • Effects of operating condition and discharge hole configuration are examined. • FMHA performance satisfies the design requirements under various abnormal conditions. - Abstract: A flow mixing header assembly (FMHA) is installed in a system-integrated modular advanced reactor (SMART) to enhance the thermal mixing capability and create a uniform core flow distribution under both normal operation and accident conditions. In this study, the thermal mixing characteristics of the FMHA are investigated for various steam generator conditions using a commercial CFD code. Simulations include investigations for the effects of FMHA discharge flow rate differences, turbulence models, and steam generator conditions. The results of the analysis show that the FMHA works effectively for thermal mixing in various conditions and makes the temperature difference at the core inlet decrease noticeably. We verified that the mixing capability of the FMHA is excellent and satisfies the design requirement in all simulation cases tested here

  3. Simulated mixed absorbers and effective atomic numbers for γ ...

    Indian Academy of Sciences (India)

    The total -ray interaction crosss-sections on mixed absorbers were determined at 662 keV with a view to study the effective atomic numbers for -ray absorption under narrow beam good geometry set-up. The measurements were taken for the combination of metallic absorbers like aluminium, copper, lead and mercury ...

  4. Resolving Mixed Algal Species in Hyperspectral Images

    Directory of Open Access Journals (Sweden)

    Mehrube Mehrubeoglu

    2013-12-01

    Full Text Available We investigated a lab-based hyperspectral imaging system’s response from pure (single and mixed (two algal cultures containing known algae types and volumetric combinations to characterize the system’s performance. The spectral response to volumetric changes in single and combinations of algal mixtures with known ratios were tested. Constrained linear spectral unmixing was applied to extract the algal content of the mixtures based on abundances that produced the lowest root mean square error. Percent prediction error was computed as the difference between actual percent volumetric content and abundances at minimum RMS error. Best prediction errors were computed as 0.4%, 0.4% and 6.3% for the mixed spectra from three independent experiments. The worst prediction errors were found as 5.6%, 5.4% and 13.4% for the same order of experiments. Additionally, Beer-Lambert’s law was utilized to relate transmittance to different volumes of pure algal suspensions demonstrating linear logarithmic trends for optical property measurements.

  5. Numerical solution of a non-linear conservation law applicable to the interior dynamics of partially molten planets

    Science.gov (United States)

    Bower, Dan J.; Sanan, Patrick; Wolf, Aaron S.

    2018-01-01

    The energy balance of a partially molten rocky planet can be expressed as a non-linear diffusion equation using mixing length theory to quantify heat transport by both convection and mixing of the melt and solid phases. Crucially, in this formulation the effective or eddy diffusivity depends on the entropy gradient, ∂S / ∂r , as well as entropy itself. First we present a simplified model with semi-analytical solutions that highlights the large dynamic range of ∂S / ∂r -around 12 orders of magnitude-for physically-relevant parameters. It also elucidates the thermal structure of a magma ocean during the earliest stage of crystal formation. This motivates the development of a simple yet stable numerical scheme able to capture the large dynamic range of ∂S / ∂r and hence provide a flexible and robust method for time-integrating the energy equation. Using insight gained from the simplified model, we consider a full model, which includes energy fluxes associated with convection, mixing, gravitational separation, and conduction that all depend on the thermophysical properties of the melt and solid phases. This model is discretised and evolved by applying the finite volume method (FVM), allowing for extended precision calculations and using ∂S / ∂r as the solution variable. The FVM is well-suited to this problem since it is naturally energy conserving, flexible, and intuitive to incorporate arbitrary non-linear fluxes that rely on lookup data. Special attention is given to the numerically challenging scenario in which crystals first form in the centre of a magma ocean. The computational framework we devise is immediately applicable to modelling high melt fraction phenomena in Earth and planetary science research. Furthermore, it provides a template for solving similar non-linear diffusion equations that arise in other science and engineering disciplines, particularly for non-linear functional forms of the diffusion coefficient.

  6. Intermittency and Topology of Shock Induced Mixing

    Science.gov (United States)

    Tellez, Jackson; Redondo, Jose M.; Ben Mahjoub, Otman; Malik, Nadeem; Vila, Teresa

    2016-04-01

    The advance of a Rayleigh-Taylor front is described in Linden & Redondo (1991),[1-3] and may be shown to follow a quadratic law in time where the width of the growing region of instability depends on the local mixing efficiency of the different density fluids that accelerate against each other g is the acceleration and A is the Atwood number defined as the diference of densities divided by their sum. This results show the independence of the large amplitude structures on the initial conditions the width of the mixing region depends also on the intermittency of the turbulence. Then dimensional analysis may also depend on the relevant reduced acceleration driven time and the molecular reactive time akin to Damkholer number and the fractal structure of the contact zone [2,4]. Detailed experiments and simulations on RT and RM shock induced fronts analized with respect to structure functions are able to determine which mechanisms are most effective in local mixing which increase the effective fractal dimension, as well as the effect of higher order geometrical parameters, such as the structure functions, in non-homogeneous fluids (Mahjoub et al 1998)[5]. The structure of a Mixing blob shows a relatively sharp head with most of the mixing taking place at the sides due to what seems to be shear instability very similar to the Kelvin-Helmholtz instabilities, but with sideways accelerations. The formation of the blobs and spikes with their secondary instabilities produces a turbulent cascade, evident just after about 1 non-dimensional time unit, from a virtual time origin that takes into account the linear growth phase, as can be seen by the growth of the fractal dimension for different volume fractions. Two-dimensional cuts of the 3D flow also show that vortex flows have closed or spiral streamlines around their core. Examples of such flows can be also seen in the laboratory, for example at the interface of atwo-layer stratified fluid in a tank in which case streamlines

  7. Effect of Genotype and Age on Some Morphometric, Body Linear ...

    African Journals Online (AJOL)

    A population of 231 roosters of the Nigerian indigenous chickens of normal feathered frizzle feathered and naked neck genotypes was evaluated for the effect of genotype and age on some morphometric body linear measurements and semen characteristics of three Nigerian chicken genotypes. 20 roosters from each ...

  8. Inactivation of E.coli in pre-cut mixed vegetables and S. typhimirium in mixed fruits by gamma radiation : Determination of D”10 Value

    International Nuclear Information System (INIS)

    Tolentino, Levelyn Mitos; De Guzman, Zenaida M.; Cobar, Ma. Lucia C.; Abrera, Gina B.; Diano, Gilbert T.

    2015-01-01

    Raw fruits and vegetables have been known to harbor pathogenic microorganisms such as Escherichia coli and Salmonella typhimurium. Associated diseases upon ingestion of contaminated fruits and vegetables include, but not limited to stomach cramps, diarrhea, vomiting and even kidney failure. Irradiation technology was proven to be an effective way of reducing and controlling pathogenic microorganisms in fruits and vegetables. The study was conducted to determine the D10 value of E.coli and S. typhimurium in pre-cut mixed vegetables and pre-cut mixed fruits, respectively, as an indicator of the effectiveness of gamma irradiation as an alternative treatment to improve the microbial safety and quality of fresh vegetables and fruits E. coli ATCC no.25922 and S. typhimurium ATCC No. 14028 were inoculated separately in ten (10) mL tryptic soy broth and incubated for 24 hrs at 37oC. Twenty five (25) grams of fresh pre-cut vegetables and pre-cut mixed fruits were inoculated separately with 0.5 mL cultured E. coli and 0.2 mL cultured S. typhimurium, respectively. The E. coli strains in fresh vegetable were exposed to irradiation doses of 0.2 to 0.8kGy. The samples were analyzed by making serial dilutions in sterile phosphate buffer using a petrifilm and tryptic soy agar according to the standards methodology describe in Bacteriological Analytical Manual (BAM). The D10 value of E. coli and S. typhimurium in fresh vegetables and mixed fruits were determined using linear regression analysis of the radiation dose with the log cfu/gm. The calculated D10 value ranged from 0.19 ± 0.02kGy and 0.22 ± 0.01kGy for pre-cut mixed vegetables and pre-cut mixed fruits, respectively. The results translate to irradiation dose of 1.0 kGy (5D10) to inactivate E. coli and S. typhimurium in mixed vegetables and fruits. (author)

  9. Effect of linear and non-linear components in the temperature dependences of thermoelectric properties on the energy conversion efficiency

    International Nuclear Information System (INIS)

    Yamashita, Osamu

    2009-01-01

    The new thermal rate equations were built up by taking the linear and non-linear components in the temperature dependences of the Seebeck coefficient α, the electrical resistivity ρ and thermal conductivity κ of a thermoelectric (TE) material into the thermal rate equations on the assumption that their temperature dependences are expressed by a quadratic function of temperature T. The energy conversion efficiency η for a single TE element was formulated using the new thermal rate ones proposed here. By applying it to the high-performance half-Heusler compound, the non-linear component in the temperature dependence of α among those of the TE properties has the greatest effect on η, so that η/η 0 was increased by 11% under the condition of T = 510 K and ΔT = 440 K, where η 0 is a well-known conventional energy conversion efficiency. It was thus found that the temperature dependences of TE properties have a significant influence on η. When one evaluates the accurate achievement rate of η exp obtained experimentally for a TE generator, therefore, η exp should be compared with η the estimated from the theoretical expression proposed here, not with η 0 , particularly when there is a strong non-linearity in the temperature dependence of TE properties.

  10. The Value of Mixed Methods Research: A Mixed Methods Study

    Science.gov (United States)

    McKim, Courtney A.

    2017-01-01

    The purpose of this explanatory mixed methods study was to examine the perceived value of mixed methods research for graduate students. The quantitative phase was an experiment examining the effect of a passage's methodology on students' perceived value. Results indicated students scored the mixed methods passage as more valuable than those who…

  11. Optimization Research of Generation Investment Based on Linear Programming Model

    Science.gov (United States)

    Wu, Juan; Ge, Xueqian

    Linear programming is an important branch of operational research and it is a mathematical method to assist the people to carry out scientific management. GAMS is an advanced simulation and optimization modeling language and it will combine a large number of complex mathematical programming, such as linear programming LP, nonlinear programming NLP, MIP and other mixed-integer programming with the system simulation. In this paper, based on the linear programming model, the optimized investment decision-making of generation is simulated and analyzed. At last, the optimal installed capacity of power plants and the final total cost are got, which provides the rational decision-making basis for optimized investments.

  12. Doubly stratified mixed convection flow of Maxwell nanofluid with heat generation/absorption

    Energy Technology Data Exchange (ETDEWEB)

    Abbasi, F.M., E-mail: abbasisarkar@gmail.com [Department of Mathematics, Comsats Institute of Information Technology, Islamabad 44000 (Pakistan); Shehzad, S.A. [Department of Mathematics, Comsats Institute of Information Technology, Sahiwal 57000 (Pakistan); Hayat, T. [Department of Mathematics, Quaid-i-Azam University, 45320, Islamabad 44000 (Pakistan); NAAM Research Group, Department of Mathematics, Faculty of Science, King Abdulaziz University, Jeddah 21589 (Saudi Arabia); Ahmad, B. [NAAM Research Group, Department of Mathematics, Faculty of Science, King Abdulaziz University, Jeddah 21589 (Saudi Arabia)

    2016-04-15

    Magnetohydrodynamic (MHD) doubly stratified flow of Maxwell nanofluid in presence of mixed convection is analyzed in this article. Effects of thermophoresis, Brownian motion and heat generation/absorption are present. The flow is induced due to linear stretching of sheet. Mathematical formulation is made under boundary layer approach. Expressions of velocity, temperature and nanoparticles concentration are developed. The obtained results are plotted and discussed to examine the variations in temperature and nanoparticles concentration due to different physical parameters. Numerical computations are made to obtain the values of local Nusselt and Sherwood numbers. Impact of sundry parameters on the flow quantities is analyzed graphically. - Highlights: • Double stratified flow of Maxwell nanofluid with mixed convection is modeled. • Thermophoresis and Brownian motion effects are encountered. • Computations are made to obtain the solution expressions. • Numerical values of local Nusselt and Sherwood numbers are computed and examined.

  13. Effect of prolonged mixing time on concrete properties

    International Nuclear Information System (INIS)

    Mohd Noorul Ikhsan Mohamed; Sidek, H.A.A.; Wahab, Z.A.

    2009-01-01

    The correlation between workability, compressive strength and mixing time of fresh concrete has been studied. The concrete samples used in the study are normal concrete of grade 30. The mix design of the concrete samples was estimated using software called Calcrete. Three concrete cubes of 150 mm size were cast immediately after mixing. The same grade of concrete was prepared with the mixing time of 30 minutes to 5 hours. All of the concrete samples were cured for 28 days under room temperature before they were compressed using a compression machine. Result shows that the compressive strength of concrete decreases when mixing time is increased. (author)

  14. Growth effects on mixed culture of Dunaliella salina and ...

    African Journals Online (AJOL)

    Dunaliella salina and Phaeodactylum tricornutum are two important marine microalgae rich in bioactive substances and other high-value constituents. In this study, growth effects on mixed culture of these two microalgae were studied under different inoculation proportions (10:0, 7:3, 5:5, 3:7, 0:10) and low, medium and high ...

  15. Mixed Linear/Square-Root Encoded Single Slope Ramp Provides a Fast, Low Noise Analog to Digital Converter with Very High Linearity for Focal Plane Arrays

    Science.gov (United States)

    Wrigley, Christopher James (Inventor); Hancock, Bruce R. (Inventor); Newton, Kenneth W. (Inventor); Cunningham, Thomas J. (Inventor)

    2014-01-01

    An analog-to-digital converter (ADC) converts pixel voltages from a CMOS image into a digital output. A voltage ramp generator generates a voltage ramp that has a linear first portion and a non-linear second portion. A digital output generator generates a digital output based on the voltage ramp, the pixel voltages, and comparator output from an array of comparators that compare the voltage ramp to the pixel voltages. A return lookup table linearizes the digital output values.

  16. Thermodynamics of mixing of sodium naproxen and procaine hydrochloride in ethanol + water cosolvent mixtures

    OpenAIRE

    Mora Guerrero, Carolina Del Pilar

    2010-01-01

    Thermodynamic functions Gibbs energy, enthalpy, and entropy of mixing of sodium naproxen and procaine hydrochloride were evaluated. Mixing quantities were calculated based on fusion calorimetric values obtained from differential scanning calorimetry measurements and equilibrium solubility values reported in the literature for both drugs in ethanol + water mixtures. By means of enthalpy-entropy compensation analysis, non-linear ΔH°mix vs. ΔG°mix plots were obtained which indicates different me...

  17. Modelling female fertility traits in beef cattle using linear and non-linear models.

    Science.gov (United States)

    Naya, H; Peñagaricano, F; Urioste, J I

    2017-06-01

    Female fertility traits are key components of the profitability of beef cattle production. However, these traits are difficult and expensive to measure, particularly under extensive pastoral conditions, and consequently, fertility records are in general scarce and somehow incomplete. Moreover, fertility traits are usually dominated by the effects of herd-year environment, and it is generally assumed that relatively small margins are kept for genetic improvement. New ways of modelling genetic variation in these traits are needed. Inspired in the methodological developments made by Prof. Daniel Gianola and co-workers, we assayed linear (Gaussian), Poisson, probit (threshold), censored Poisson and censored Gaussian models to three different kinds of endpoints, namely calving success (CS), number of days from first calving (CD) and number of failed oestrus (FE). For models involving FE and CS, non-linear models overperformed their linear counterparts. For models derived from CD, linear versions displayed better adjustment than the non-linear counterparts. Non-linear models showed consistently higher estimates of heritability and repeatability in all cases (h 2  linear models; h 2  > 0.23 and r > 0.24, for non-linear models). While additive and permanent environment effects showed highly favourable correlations between all models (>0.789), consistency in selecting the 10% best sires showed important differences, mainly amongst the considered endpoints (FE, CS and CD). In consequence, endpoints should be considered as modelling different underlying genetic effects, with linear models more appropriate to describe CD and non-linear models better for FE and CS. © 2017 Blackwell Verlag GmbH.

  18. Group-Level EEG-Processing Pipeline for Flexible Single Trial-Based Analyses Including Linear Mixed Models.

    Science.gov (United States)

    Frömer, Romy; Maier, Martin; Abdel Rahman, Rasha

    2018-01-01

    Here we present an application of an EEG processing pipeline customizing EEGLAB and FieldTrip functions, specifically optimized to flexibly analyze EEG data based on single trial information. The key component of our approach is to create a comprehensive 3-D EEG data structure including all trials and all participants maintaining the original order of recording. This allows straightforward access to subsets of the data based on any information available in a behavioral data structure matched with the EEG data (experimental conditions, but also performance indicators, such accuracy or RTs of single trials). In the present study we exploit this structure to compute linear mixed models (LMMs, using lmer in R) including random intercepts and slopes for items. This information can easily be read out from the matched behavioral data, whereas it might not be accessible in traditional ERP approaches without substantial effort. We further provide easily adaptable scripts for performing cluster-based permutation tests (as implemented in FieldTrip), as a more robust alternative to traditional omnibus ANOVAs. Our approach is particularly advantageous for data with parametric within-subject covariates (e.g., performance) and/or multiple complex stimuli (such as words, faces or objects) that vary in features affecting cognitive processes and ERPs (such as word frequency, salience or familiarity), which are sometimes hard to control experimentally or might themselves constitute variables of interest. The present dataset was recorded from 40 participants who performed a visual search task on previously unfamiliar objects, presented either visually intact or blurred. MATLAB as well as R scripts are provided that can be adapted to different datasets.

  19. Modeling and simulation of protein elution in linear pH and salt gradients on weak, strong and mixed cation exchange resins applying an extended Donnan ion exchange model.

    Science.gov (United States)

    Wittkopp, Felix; Peeck, Lars; Hafner, Mathias; Frech, Christian

    2018-04-13

    Process development and characterization based on mathematic modeling provides several advantages and has been applied more frequently over the last few years. In this work, a Donnan equilibrium ion exchange (DIX) model is applied for modelling and simulation of ion exchange chromatography of a monoclonal antibody in linear chromatography. Four different cation exchange resin prototypes consisting of weak, strong and mixed ligands are characterized using pH and salt gradient elution experiments applying the extended DIX model. The modelling results are compared with the results using a classic stoichiometric displacement model. The Donnan equilibrium model is able to describe all four prototype resins while the stoichiometric displacement model fails for the weak and mixed weak/strong ligands. Finally, in silico chromatogram simulations of pH and pH/salt dual gradients are performed to verify the results and to show the consistency of the developed model. Copyright © 2018 Elsevier B.V. All rights reserved.

  20. Effect of mixing on the rheology and particle characteristics of tungsten-based powder injection molding feedstock

    International Nuclear Information System (INIS)

    Suri, Pavan; Atre, Sundar V.; German, Randall M.; Souza, Jupiter P. de

    2003-01-01

    This study investigates the effect of mixing technique and particle characteristics on the rheology and agglomerate dispersion of tungsten-based powder injection molding (PIM) feedstock. Experiments were conducted with as-received (agglomerated) and rod-milled (deagglomerated) tungsten powder mixed in a paraffin wax-polypropylene binder. Increase in the mixing shear rate decreased the agglomerate size of the agglomerated tungsten powder, decreased the viscosity, and improved the flow stability of the feedstock, interpreted as increased homogeneity of the feedstock. Higher solids volume fraction, lower mixing torques, and improved homogeneity were observed with deagglomerated tungsten powder, emphasizing the importance of particle characteristics and mixing procedures in the PIM process. Hydrodynamic stress due to mixing and the cohesive strength of the tungsten agglomerate were calculated to understand the mechanism of deagglomeration and quantify the effect of mixing. It was concluded that deagglomeration occurs due to a combination of rupture and erosion with the local hydrodynamic stresses exceeding the cohesive strength of the agglomerate

  1. Mixed heavy–light matching in the Universal One-Loop Effective Action

    International Nuclear Information System (INIS)

    Ellis, Sebastian A.R.; Quevillon, Jérémie; You, Tevong; Zhang, Zhengkang

    2016-01-01

    Recently, a general result for evaluating the path integral at one loop was obtained in the form of the Universal One-Loop Effective Action. It may be used to derive effective field theory operators of dimensions up to six, by evaluating the traces of matrices in this expression, with the mass dependence encapsulated in the universal coefficients. Here we show that it can account for loops of mixed heavy–light particles in the matching procedure. Our prescription for computing these mixed contributions to the Wilson coefficients is conceptually simple. Moreover it has the advantage of maintaining the universal structure of the effective action, which we illustrate using the example of integrating out a heavy electroweak triplet scalar coupling to a light Higgs doublet. Finally we also identify new structures that were previously neglected in the universal results.

  2. EFFECTS OF OXYGEN AND AIR MIXING ON VOID FRACTIONS IN A LARGE SCALE SYSTEM

    International Nuclear Information System (INIS)

    Leishear, R; Hector Guerrero, H; Michael Restivo, M

    2008-01-01

    Oxygen and air mixing with spargers was performed in a 30 foot tall by 30 inch diameter column, to investigate mass transfer as air sparged up through the column and removed saturated oxygen from solution. The mixing techniques required to support this research are the focus of this paper. The fluids tested included water, water with an antifoam agent (AFA), and a high, solids content, Bingham plastic, nuclear waste simulant with AFA, referred to as AZ01 simulant, which is non-radioactive. Mixing of fluids in the column was performed using a recirculation system and an air sparger. The re-circulation system consisted of the column, a re-circulating pump, and associated piping. The air sparger was fabricated from a two inch diameter pipe concentrically installed in the column and open near the bottom of the column. The column contents were slowly re-circulated while fluids were mixed with the air sparger. Samples were rheologically tested to ensure effective mixing, as required. Once the fluids were adequately mixed, oxygen was homogeneously added through the re-circulation loop using a sintered metal oxygen sparger followed by a static mixer. Then the air sparger was re-actuated to remove oxygen from solution as air bubbled up through solution. To monitor mixing effectiveness several variables were monitored, which included flow rates, oxygen concentration, differential pressures along the column height, fluid levels, and void fractions, which are defined as the percent of dissolved gas divided by the total volume of gas and liquid. Research showed that mixing was uniform for water and water with AFA, but mixing for the AZ101 fluid was far more complex. Although mixing of AZ101 was uniform throughout most of the column, gas entrapment and settling of solids significantly affected test results. The detailed test results presented here provide some insight into the complexities of mixing and void fractions for different fluids and how the mixing process itself

  3. EFFECTS OF OXYGEN AND AIR MIXING ON VOID FRACTIONS IN A LARGE SCALE SYSTEM

    Energy Technology Data Exchange (ETDEWEB)

    Leishear, R; Hector Guerrero, H; Michael Restivo, M

    2008-09-11

    Oxygen and air mixing with spargers was performed in a 30 foot tall by 30 inch diameter column, to investigate mass transfer as air sparged up through the column and removed saturated oxygen from solution. The mixing techniques required to support this research are the focus of this paper. The fluids tested included water, water with an antifoam agent (AFA), and a high, solids content, Bingham plastic, nuclear waste simulant with AFA, referred to as AZ01 simulant, which is non-radioactive. Mixing of fluids in the column was performed using a recirculation system and an air sparger. The re-circulation system consisted of the column, a re-circulating pump, and associated piping. The air sparger was fabricated from a two inch diameter pipe concentrically installed in the column and open near the bottom of the column. The column contents were slowly re-circulated while fluids were mixed with the air sparger. Samples were rheologically tested to ensure effective mixing, as required. Once the fluids were adequately mixed, oxygen was homogeneously added through the re-circulation loop using a sintered metal oxygen sparger followed by a static mixer. Then the air sparger was re-actuated to remove oxygen from solution as air bubbled up through solution. To monitor mixing effectiveness several variables were monitored, which included flow rates, oxygen concentration, differential pressures along the column height, fluid levels, and void fractions, which are defined as the percent of dissolved gas divided by the total volume of gas and liquid. Research showed that mixing was uniform for water and water with AFA, but mixing for the AZ101 fluid was far more complex. Although mixing of AZ101 was uniform throughout most of the column, gas entrapment and settling of solids significantly affected test results. The detailed test results presented here provide some insight into the complexities of mixing and void fractions for different fluids and how the mixing process itself

  4. Single-event effects in analog and mixed-signal integrated circuits

    International Nuclear Information System (INIS)

    Turflinger, T.L.

    1996-01-01

    Analog and mixed-signal integrated circuits are also susceptible to single-event effects, but they have rarely been tested. Analog circuit single-particle transients require modified test techniques and data analysis. Existing work is reviewed and future concerns are outlined

  5. Effect of Hand Mixing on the Compressive Strength of Concrete

    Directory of Open Access Journals (Sweden)

    James Isiwu AGUWA

    2010-12-01

    Full Text Available This paper presents the effect of hand mixing on the compressive strength of concrete. Before designing the concrete mix, sieve analysis of sharp sand and chippings was carried out and their fineness moduli were determined. Also the dry weight of chippings and the specific gravities of both sand and chippings were determined. A designed concrete mix of 1:2:4 was used and the number of turnings of the mixture over from one end to another by hand mixing was varying from one time up to and including seven times. The strengths were measured at the curing ages of 7, 14, 21 and 28 days respectively using 150mm concrete cubes cast, cured and crushed. The results revealed that the compressive strengths of concrete cubes appreciably increased with increase in number of turnings from one to four times but remained almost constant beyond four times of turning for all the ages tested. For example, at 1, 2, and 3 times turning; the compressive strengths at 28 days were 4.67, 13.37 and 20.28N/mm2 respectively while at 4, 5 and 6 times turning; the compressive strengths at 28 days were 21.15, 21.34 and 21.69N/mm2. From the data, adequate strengths were not developed at turnings below three times of hand mixing, concluding that a minimum of three times turning is required to produce concrete with satisfactory strength.

  6. Linear models for joint association and linkage QTL mapping

    Directory of Open Access Journals (Sweden)

    Fernando Rohan L

    2009-09-01

    Full Text Available Abstract Background Populational linkage disequilibrium and within-family linkage are commonly used for QTL mapping and marker assisted selection. The combination of both results in more robust and accurate locations of the QTL, but models proposed so far have been either single marker, complex in practice or well fit to a particular family structure. Results We herein present linear model theory to come up with additive effects of the QTL alleles in any member of a general pedigree, conditional to observed markers and pedigree, accounting for possible linkage disequilibrium among QTLs and markers. The model is based on association analysis in the founders; further, the additive effect of the QTLs transmitted to the descendants is a weighted (by the probabilities of transmission average of the substitution effects of founders' haplotypes. The model allows for non-complete linkage disequilibrium QTL-markers in the founders. Two submodels are presented: a simple and easy to implement Haley-Knott type regression for half-sib families, and a general mixed (variance component model for general pedigrees. The model can use information from all markers. The performance of the regression method is compared by simulation with a more complex IBD method by Meuwissen and Goddard. Numerical examples are provided. Conclusion The linear model theory provides a useful framework for QTL mapping with dense marker maps. Results show similar accuracies but a bias of the IBD method towards the center of the region. Computations for the linear regression model are extremely simple, in contrast with IBD methods. Extensions of the model to genomic selection and multi-QTL mapping are straightforward.

  7. Cortical Contribution to Linear, Non-linear and Frequency Components of Motor Variability Control during Standing.

    Science.gov (United States)

    König Ignasiak, Niklas; Habermacher, Lars; Taylor, William R; Singh, Navrag B

    2017-01-01

    Motor variability is an inherent feature of all human movements and reflects the quality of functional task performance. Depending on the requirements of the motor task, the human sensory-motor system is thought to be able to flexibly govern the appropriate level of variability. However, it remains unclear which neurophysiological structures are responsible for the control of motor variability. In this study, we tested the contribution of cortical cognitive resources on the control of motor variability (in this case postural sway) using a dual-task paradigm and furthermore observed potential changes in control strategy by evaluating Ia-afferent integration (H-reflex). Twenty healthy subjects were instructed to stand relaxed on a force plate with eyes open and closed, as well as while trying to minimize sway magnitude and performing a "subtracting-sevens" cognitive task. In total 25 linear and non-linear parameters were used to evaluate postural sway, which were combined using a Principal Components procedure. Neurophysiological response of Ia-afferent reflex loop was quantified using the Hoffman reflex. In order to assess the contribution of the H-reflex on the sway outcome in the different standing conditions multiple mixed-model ANCOVAs were performed. The results suggest that subjects were unable to further minimize their sway, despite actively focusing to do so. The dual-task had a destabilizing effect on PS, which could partly (by 4%) be counter-balanced by increasing reliance on Ia-afferent information. The effect of the dual-task was larger than the protective mechanism of increasing Ia-afferent information. We, therefore, conclude that cortical structures, as compared to peripheral reflex loops, play a dominant role in the control of motor variability.

  8. CFD simulations to study the effects of wall protrusions on microfluidic mixing

    Science.gov (United States)

    Sarkar, Sourav; Singh, K. K.; Shankar, V.; Shenoy, K. T.

    2015-08-01

    In this study the effects of different types of wall protrusions on microfluidic mixing are studied using computational fluid dynamics (CFD) simulations. Two new protrusions, single first bracket protrusions and double opposite first bracket protrusions (DOFBPs), are conceptualized, evaluated through CFD simulations and compared to protrusions having standard geometrical shapes, e.g. rectangular protrusions, triangular protrusions and semicircular protrusions. In the range of Reynolds numbers covered in this study, the microchannel having an opposed T-junction and DOFBPs is found to provide good mixing. A hybrid approach relying on the modification of microfluidic junctions as well as wall protrusions for enhancing microfluidic mixing is also evaluated. The microchannel based on the hybrid approach of an OA 10°-20°-165° WY-junction and DOFBPs is also found to provide very good mixing for a wide range of Reynolds numbers.

  9. Localized chaoticity in two linearly coupled inverted double-well ...

    African Journals Online (AJOL)

    Two linearly coupled inverted double-well oscillators for a fixed energy and varying coupling strength were studied. The dynamics yielded a chaotic system in which the Poincare surface was characterised by two non-mixing regions, one of regular motion and the other region that became chaotic as the coupling increased.

  10. Stochastic Mixed-Effects Parameters Bertalanffy Process, with Applications to Tree Crown Width Modeling

    Directory of Open Access Journals (Sweden)

    Petras Rupšys

    2015-01-01

    Full Text Available A stochastic modeling approach based on the Bertalanffy law gained interest due to its ability to produce more accurate results than the deterministic approaches. We examine tree crown width dynamic with the Bertalanffy type stochastic differential equation (SDE and mixed-effects parameters. In this study, we demonstrate how this simple model can be used to calculate predictions of crown width. We propose a parameter estimation method and computational guidelines. The primary goal of the study was to estimate the parameters by considering discrete sampling of the diameter at breast height and crown width and by using maximum likelihood procedure. Performance statistics for the crown width equation include statistical indexes and analysis of residuals. We use data provided by the Lithuanian National Forest Inventory from Scots pine trees to illustrate issues of our modeling technique. Comparison of the predicted crown width values of mixed-effects parameters model with those obtained using fixed-effects parameters model demonstrates the predictive power of the stochastic differential equations model with mixed-effects parameters. All results were implemented in a symbolic algebra system MAPLE.

  11. Recursive and non-linear logistic regression: moving on from the original EuroSCORE and EuroSCORE II methodologies.

    Science.gov (United States)

    Poullis, Michael

    2014-11-01

    EuroSCORE II, despite improving on the original EuroSCORE system, has not solved all the calibration and predictability issues. Recursive, non-linear and mixed recursive and non-linear regression analysis were assessed with regard to sensitivity, specificity and predictability of the original EuroSCORE and EuroSCORE II systems. The original logistic EuroSCORE, EuroSCORE II and recursive, non-linear and mixed recursive and non-linear regression analyses of these risk models were assessed via receiver operator characteristic curves (ROC) and Hosmer-Lemeshow statistic analysis with regard to the accuracy of predicting in-hospital mortality. Analysis was performed for isolated coronary artery bypass grafts (CABGs) (n = 2913), aortic valve replacement (AVR) (n = 814), mitral valve surgery (n = 340), combined AVR and CABG (n = 517), aortic (n = 350), miscellaneous cases (n = 642), and combinations of the above cases (n = 5576). The original EuroSCORE had an ROC below 0.7 for isolated AVR and combined AVR and CABG. None of the methods described increased the ROC above 0.7. The EuroSCORE II risk model had an ROC below 0.7 for isolated AVR only. Recursive regression, non-linear regression, and mixed recursive and non-linear regression all increased the ROC above 0.7 for isolated AVR. The original EuroSCORE had a Hosmer-Lemeshow statistic that was above 0.05 for all patients and the subgroups analysed. All of the techniques markedly increased the Hosmer-Lemeshow statistic. The EuroSCORE II risk model had a Hosmer-Lemeshow statistic that was significant for all patients (P linear regression failed to improve on the original Hosmer-Lemeshow statistic. The mixed recursive and non-linear regression using the EuroSCORE II risk model was the only model that produced an ROC of 0.7 or above for all patients and procedures and had a Hosmer-Lemeshow statistic that was highly non-significant. The original EuroSCORE and the EuroSCORE II risk models do not have adequate ROC and Hosmer

  12. Relative entropy, mixed gauge-gravitational anomaly and causality

    Energy Technology Data Exchange (ETDEWEB)

    Bhattacharyya, Arpan [Department of Physics and Center for Field Theory and Particle Physics, Fudan University,220 Handan Road, 200433 Shanghai (China); Centre For High Energy Phsyics, Indian Institute of Science,560012 Bangalore (India); Cheng, Long [Department of Physics and Center for Field Theory and Particle Physics, Fudan University,220 Handan Road, 200433 Shanghai (China); Hung, Ling-Yan [Department of Physics and Center for Field Theory and Particle Physics, Fudan University,220 Handan Road, 200433 Shanghai (China); Collaborative Innovation Center of Advanced Microstructures, Fudan University,220 Handan Road, 200433 Shanghai (China)

    2016-07-25

    In this note we explored the holographic relative entropy in the presence of the 5d Chern-Simons term, which introduces a mixed gauge-gravity anomaly to the dual CFT. The theory trivially satisfies an entanglement first law. However, to quadratic order in perturbations of the stress tensor T and current density J, there is a mixed contribution to the relative entropy bi-linear in T and J, signalling a potential violation of the positivity of the relative entropy. Miraculously, the term vanishes up to linear order in a derivative expansion. This prompted a closer inspection on a different consistency check, that involves time-delay of a graviton propagating in a charged background, scattered via a coupling supplied by the Chern-Simons term. The analysis suggests that the time-delay can take either sign, potentially violating causality for any finite value of the CS coupling.

  13. Large electron transfer rate effects from the Duschinsky mixing of vibrations

    DEFF Research Database (Denmark)

    Sando, Gerald M.; Spears, Kenneth G; Hupp, Joseph T

    2001-01-01

    vibrations are very important. The Duschinsky effect arises when two electronic states have vibrational normal mode coordinate systems that are rotated and translated relative to each other. We use a conventional quantum rate model for ET, and the examples include 6-8 vibrations, where two vibrational modes...... are mixed with different amounts of coordinate rotation. The multidimensional Franck-Condon factors (FCF) are computed with standard algorithms and recently developed recursion relations. When displaced, totally symmetric modes are involved, rates with Duschinsky mixing can increase several orders...

  14. Linear and quasi-linear equations of parabolic type

    CERN Document Server

    Ladyženskaja, O A; Ural′ceva, N N; Uralceva, N N

    1968-01-01

    Equations of parabolic type are encountered in many areas of mathematics and mathematical physics, and those encountered most frequently are linear and quasi-linear parabolic equations of the second order. In this volume, boundary value problems for such equations are studied from two points of view: solvability, unique or otherwise, and the effect of smoothness properties of the functions entering the initial and boundary conditions on the smoothness of the solutions.

  15. Semiparametric mixed-effects analysis of PK/PD models using differential equations.

    Science.gov (United States)

    Wang, Yi; Eskridge, Kent M; Zhang, Shunpu

    2008-08-01

    Motivated by the use of semiparametric nonlinear mixed-effects modeling on longitudinal data, we develop a new semiparametric modeling approach to address potential structural model misspecification for population pharmacokinetic/pharmacodynamic (PK/PD) analysis. Specifically, we use a set of ordinary differential equations (ODEs) with form dx/dt = A(t)x + B(t) where B(t) is a nonparametric function that is estimated using penalized splines. The inclusion of a nonparametric function in the ODEs makes identification of structural model misspecification feasible by quantifying the model uncertainty and provides flexibility for accommodating possible structural model deficiencies. The resulting model will be implemented in a nonlinear mixed-effects modeling setup for population analysis. We illustrate the method with an application to cefamandole data and evaluate its performance through simulations.

  16. Unique heavy lepton signature at e{sup +}e{sup -} linear collider with polarized beams

    Energy Technology Data Exchange (ETDEWEB)

    Moortgat-Pick, G. [Hamburg Univ. (Germany). 2. Inst. fuer Theoretische Physik; Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Osland, P. [Univ. Bergen (Norway). Dept. of Physics and Technology; Pankov, A.A.; Tsytrinov, A.V. [Technical Univ. Gomel (Belarus). Abdus Salam ICTP Affliated Centre

    2013-03-15

    We explore the effects of neutrino and electron mixing with exotic heavy leptons in the process e{sup +}e{sup -}{yields}W{sup +}W{sup -} within E{sub 6} models. We examine the possibility of uniquely distinguishing and identifying such effects of heavy neutral lepton exchange from Z-Z' mixing within the same class of models and also from analogous ones due to competitor models with anomalous trilinear gauge couplings (AGC) that can lead to very similar experimental signatures at the e{sup +}e{sup -} International Linear Collider (ILC) for {radical}(s)=350, 500 GeV and 1 TeV. Such clear identification of the model is possible by using a certain double polarization asymmetry. The availability of both beams being polarized plays a crucial role in identifying such exotic-lepton admixture. In addition, the sensitivity of the ILC for probing exotic-lepton admixture is substantially enhanced when the polarization of the produced W{sup {+-}} bosons is considered.

  17. The effect of mixing method on tricalcium silicate-based cement.

    Science.gov (United States)

    Duque, J A; Fernandes, S L; Bubola, J P; Duarte, M A H; Camilleri, J; Marciano, M A

    2018-01-01

    To evaluate the effect of three methods of mixing on the physical and chemical properties of tricalcium silicate-based cements. The materials evaluated were MTA Angelus and Portland cement with 20% zirconium oxide (PC-20-Zr). The cements were mixed using a 3 : 1 powder-to-liquid ratio. The mixing methods were manual (m), trituration (tr) and ultrasonic (us) activation. The materials were characterized by means of scanning electron microscope (SEM) and energy dispersive X-ray spectroscopy. Flowability was analysed according to ANSI/ADA 57/2012. Initial and final setting times were assessed following ASTM C266/08. Volume change was evaluated using a micro-CT volumetric method. Solubility was analysed according to ADA 57/2012. pH and calcium ion release were measured after 3, 24, 72 and 168 h. Statistical analysis was performed using two-way analysis of variance. The level of significance was set at P = 0.05. The SEM analysis revealed that ultrasonic activation was associated with a homogeneous distribution of particles. Flowability, volume change and initial setting time were not influenced by the mixing method (P > 0.05). Solubility was influenced by the mixing method (P < 0.05). For pH, at 168 h, significant differences were found between MTA-m and PC-20-Zr-m (P < 0.05). For calcium ion release, PC-20-Zr-tr had higher values than MTA-m at 3 h, and MTA-tr had higher values than PC-20-Zr-m at 168 h (P < 0.05). The ultrasonic and trituration methods led to higher calcium ion release and pH compared with manual mixing for all cements, whilst the ultrasonic method produced smaller particles for the PC-20-Zr cement. Flow, setting times and volume change were not influenced by the mixing method used; however, it did have an impact on solubility. © 2017 International Endodontic Journal. Published by John Wiley & Sons Ltd.

  18. Hospital ownership and medical services: market mix, spillover effects, and nonprofit objectives.

    Science.gov (United States)

    Horwitz, Jill R; Nichols, Austin

    2009-09-01

    Hospitals operate in markets with varied demographic, competitive, and ownership characteristics, yet research on ownership tends to examine hospitals in isolation. Here we examine three hospital ownership types -- nonprofit, for-profit, and government -- and their spillover effects. We estimate the effects of for-profit market share in two ways, on the provision of medical services and on operating margins at the three types of hospitals. We find that nonprofit hospitals' medical service provision systematically varies by market mix. We find no significant effect of market mix on the operating margins of nonprofit hospitals, but find that for-profit hospitals have higher margins in markets with more for-profits. These results fit best with theories in which hospitals maximize their own output.

  19. The effect of high intensity mixing on the enzymatic hydrolysis of concentrated cellulose fiber suspensions

    Science.gov (United States)

    Joseph R. Samaniuk; C. Tim Scott; Thatcher W. Root; Daniel J. Klingenberg

    2011-01-01

    Enzymatic hydrolysis of lignocellulosic biomass in a high shear environment was examined. The conversion of cellulose to glucose in samples mixed in a torque rheometer producing shear flows similar to those found in twin screw extruders was greater than that of unmixed samples. In addition, there is a synergistic effect of mixing and enzymatic hydrolysis; mixing...

  20. The effectiveness of unguided internet cognitive behavioural therapy for mixed anxiety and depression

    Directory of Open Access Journals (Sweden)

    Carla Morgan

    2017-12-01

    Full Text Available Clinician-guided internet-delivered cognitive behavioral therapy (iCBT is an effective treatment for depression and anxiety disorders. However, few studies have examined the effectiveness of completely unguided iCBT. The current research investigated adherence to, and the effects of two brief unguided iCBT programs on depression and anxiety symptom severity, and psychological distress. Study 1 evaluated a four-lesson transdiagnostic iCBT program for anxiety and depression (N = 927. Study 2 then evaluated a three-lesson version of the same program (N = 5107 in order to determine whether reducing the duration of treatment would influence adherence and treatment effects. Cross-tabulations and independent t-tests were used to examine the extent to which users adhered and remitted with treatment. Linear mixed models were used to evaluate the effects of treatment in the entire sample, and stratified by gender and completer-type (e.g., users who completed some but not all lessons vs. those who completed all lessons of treatment. Among those who began treatment, 13.83% completed all four lessons in Study 1. Shortening the course to three lessons did not improve adherence (e.g., 13.11% in Study 2. In both studies, users, on average, experienced moderate to large effect size reductions in anxiety and depressive symptom severity, as well as psychological distress. This pattern of results was robust across gender and for those who did and did not complete treatment. Approximately two-thirds of those who completed treatment experienced remission. These data show that unguided iCBT programs, which have the capacity to attract large numbers of individuals with clinically significant symptoms of depression and anxiety, and psychological distress, can produce significant improvements in wellbeing.

  1. The effect of mixing on fermentation of primary solids, glycerol, and biodiesel waste.

    Science.gov (United States)

    Ghasemi, Marzieh; Randall, Andrew A

    2018-03-01

    In this study, the effect of mixing on volatile fatty acid (VFA) production and composition was investigated through running five identical bench-scale reactors that were filled with primary solid and dosed with either pure glycerol or biodiesel waste. Experimental results revealed that there was an inverse correlation between the mixing intensity and the VFA production. The total VFA production in the un-mixed reactor was 9,787 ± 3,601 mg COD/L, whereas in the reactor mixed at 100 rpm this dropped to 3,927 ± 1,175 mg COD/L, while both types of reactor were dosed with pure glycerol at the beginning of each cycle to reach the initial concentration of 1,000 mg/L (1,217 mg COD/L). Propionic acid was the dominant VFA in all the reactors except the reactor mixed at 30 rpm. It is hypothesized that low mixing facilitated hydrogen transfer between obligate hydrogen producing acetogens (OHPA) and hydrogen consuming acidogens in these non-methanogenic reactors. Also, in a narrower range of mixing (0 or 7 rpm), the total VFA production in biodiesel waste-fed reactors was considerably higher than that of pure glycerol-fed reactors.

  2. The effect of mixing order of fillers on the physical properties of EPDM

    International Nuclear Information System (INIS)

    Gul, J.; Saleemi, A.R.

    2007-01-01

    In this research the effect of mixing order of fillers on the physical properties of EPDM (Ethylene Propylene Diene Monomer) vulcanizates was studied. EPDM was compounded with other ingredients i.e. fillers, process aid, curing package etc in order to get the needed physical properties for thermal insulation. All the factors, which could affect the physical properties of EPDM vulcanizates such as quality and quantity of raw materials, storage conditions of ingredients and vulcanizates, compounding and testing facilities, mixing time, process parameters etc were kept constant except mixing order of addition of filler to EPDM. Different batches of EPDM vulcanizates with different mixing order/sequence of filler to EPDM were prepared and tested for physical properties like density, hardness, tensile strength and elongation. It was concluded that mixing order of filler to EPDM affects tensile strength, elongation and hardness and does not affect density of the EPDM vulcanizate. (author)

  3. Effects of elevated line sources on turbulent mixing in channel flow

    Science.gov (United States)

    Nguyen, Quoc; Papavassiliou, Dimitrios

    2016-11-01

    Fluids mixing in turbulent flows has been studied extensively, due to the importance of this phenomena in nature and engineering. Convection effects along with motion of three-dimensional coherent structures in turbulent flow disperse a substance more efficiently than molecular diffusion does on its own. We present here, however, a study that explores the conditions under which turbulent mixing does not happen, when different substances are released into the flow field from different vertical locations. The study uses a method which combines Direct Numerical Simulation (DNS) with Lagrangian Scalar Tracking (LST) to simulate a turbulent channel flow and track the motion of passive scalars with different Schmidt numbers (Sc). The particles are released from several instantaneous line sources, ranging from the wall to the center region of the channel. The combined effects of mean velocity difference, molecular diffusion and near-wall coherent structures lead to the observation of different concentrations of particles downstream from the source. We then explore in details the conditions under which particles mixing would not happen. Results from numerical simulation at friction Reynolds number of 300 and 600 will be discussed and for Sc ranging from 0.1 to 2,400.

  4. Effect of Alkaline Solution with Varying Mix Proportion on Geopolymer Mortar

    Science.gov (United States)

    Karuppuchamy, K.; Ananthkumar, M.; Raghavapriya, S. M.

    2018-02-01

    Cement production is attributed by emission of carbon dioxide which causes severe environmental impacts. This has led to the invention of special construction materials which can replace cement. On the other hand, these construction materials (like Fly ash, Metakaolin) also need to be inexpensive and should possess all the characteristics of cementitious materials. In this project, the effect of geopolymerization on the properties of the end product were studied with varying distillation of NaOH solution (10M, 12M and 15M) for different mix proportion (1:1, 1:2 and 1:3). Curing was done for 1 day at a temperature of 60°C and 80°C respectively. The densities, compressive strength, alkalinity, co-efficient of absorption were determined. As a result, the experiments showed the effect of factors such as mix proportion, curing temperature and curing day on the physical and mechanical properties such as mix proportion of the geopolymer concrete. Results of NaOH concentration of 12M concentration cured for 24 hours at 80°C and 60°C showed better mechanical performance than the rest of the concentrations.

  5. Modelling non-linear effects of dark energy

    Science.gov (United States)

    Bose, Benjamin; Baldi, Marco; Pourtsidou, Alkistis

    2018-04-01

    We investigate the capabilities of perturbation theory in capturing non-linear effects of dark energy. We test constant and evolving w models, as well as models involving momentum exchange between dark energy and dark matter. Specifically, we compare perturbative predictions at 1-loop level against N-body results for four non-standard equations of state as well as varying degrees of momentum exchange between dark energy and dark matter. The interaction is modelled phenomenologically using a time dependent drag term in the Euler equation. We make comparisons at the level of the matter power spectrum and the redshift space monopole and quadrupole. The multipoles are modelled using the Taruya, Nishimichi and Saito (TNS) redshift space spectrum. We find perturbation theory does very well in capturing non-linear effects coming from dark sector interaction. We isolate and quantify the 1-loop contribution coming from the interaction and from the non-standard equation of state. We find the interaction parameter ξ amplifies scale dependent signatures in the range of scales considered. Non-standard equations of state also give scale dependent signatures within this same regime. In redshift space the match with N-body is improved at smaller scales by the addition of the TNS free parameter σv. To quantify the importance of modelling the interaction, we create mock data sets for varying values of ξ using perturbation theory. This data is given errors typical of Stage IV surveys. We then perform a likelihood analysis using the first two multipoles on these sets and a ξ=0 modelling, ignoring the interaction. We find the fiducial growth parameter f is generally recovered even for very large values of ξ both at z=0.5 and z=1. The ξ=0 modelling is most biased in its estimation of f for the phantom w=‑1.1 case.

  6. "The Effects of Mixing Offenders with Non-Offenders: Findings from a Danish Quasi Experiment"

    DEFF Research Database (Denmark)

    Kjær Minke, Linda

    2011-01-01

    This study examines the effects of mixing offenders with nonoffenders at Skejby half-way house in Denmark. Skejby halfway house constitutes an outstanding social experiment, as offenders are deliberately mixed with non-offenders in order to reduce their risk of recidivism. The treatment group...

  7. Comparing the Effects of Negative and Mixed Emotional Messages on Predicted Occasional Excessive Drinking

    Directory of Open Access Journals (Sweden)

    Pilar Carrera

    2008-01-01

    Full Text Available In this work we present two types of emotional message, negative (sadness versus mixed (joy and sadness, with the aim of studying their differential effect on attitude change and the probability estimated by participants of repeating the behavior of occasional excessive drinking in the near future. The results show that for the group of participants with moderate experience in this behavior the negative message, compared to the mixed one, is associated with higher probability of repeating the risk behavior and a less negative attitude toward it. These results suggest that mixed emotional messages (e.g. joy and sadness messages could be more effective in campaigns for the prevention of this risk behavior.

  8. Comparing the effects of negative and mixed emotional messages on predicted occasional excessive drinking.

    Science.gov (United States)

    Carrera, Pilar; Caballero, Amparo; Muñoz, Dolores

    2008-01-01

    In this work we present two types of emotional message, negative (sadness) versus mixed (joy and sadness), with the aim of studying their differential effect on attitude change and the probability estimated by participants of repeating the behavior of occasional excessive drinking in the near future. The results show that for the group of participants with moderate experience in this behavior the negative message, compared to the mixed one, is associated with higher probability of repeating the risk behavior and a less negative attitude toward it. These results suggest that mixed emotional messages (e.g. joy and sadness messages) could be more effective in campaigns for the prevention of this risk behavior.

  9. Effective delayed neutron fraction and prompt neutron lifetime of Tehran research reactor mixed-core

    International Nuclear Information System (INIS)

    Lashkari, A.; Khalafi, H.; Kazeminejad, H.

    2013-01-01

    Highlights: ► Kinetic parameters of Tehran research reactor mixed-core have been calculated. ► Burn-up effect on TRR kinetics parameters has been studied. ► Replacement of LEU-CFE with HEU-CFE in the TRR core has been investigated. ► Results of each mixed core were compared to the reference core. ► Calculation of kinetic parameters are necessary for reactivity and power excursion transient analysis. - Abstract: In this work, kinetic parameters of Tehran research reactor (TRR) mixed cores have been calculated. The mixed core configurations are made by replacement of the low enriched uranium control fuel elements with highly enriched uranium control fuel elements in the reference core. The MTR P C package, a nuclear reactor analysis tool, is used to perform the analysis. Simulations were carried out to compute effective delayed neutron fraction and prompt neutron lifetime. Calculation of kinetic parameters is necessary for reactivity and power excursion transient analysis. The results of this research show that effective delayed neutron fraction decreases and prompt neutron lifetime increases with the fuels burn-up. Also, by increasing the number of highly enriched uranium control fuel elements in the reference core, the prompt neutron lifetime increases, but effective delayed neutron fraction does not show any considerable change

  10. Tests of the linearity assumption in the dose-effect relationship for radiation-induced cancer

    International Nuclear Information System (INIS)

    Cohen, A.F.; Cohen, B.L.

    1978-01-01

    The validity of the BEIR linear extrapolation to low doses of the dose-effect relationship for radiation induced cancer is tested by use of natural radiation making use of selectivity on type of cancer, sex, age group, geographic area, and time period. For lung cancer, a linear interpolation between zero dose-zero effect and the data from radon-induced cancers in miners over-estimates the total number of observed lung cancers in many countries in the early years of this century; the discrepancy is substantially increased if the 30-44 year age range and/or if only females are considered, and by the fact that many other causes of lung cancer are shown to have been important at that time. The degree to which changes of diagnostic efficiency with time can influence the analysis is considered at some length. It is concluded that the linear relationship substantially over-estimates effects of low radiation doses. A similar analysis is applied to leukemia induced by natural radiation, applying selectivity by age, sex, natural background level, and date, and considering other causes. It is concluded that effects substantially larger than those obtained from linear extrapolation are excluded. The use of the selectivities mentioned above is justified by the fact that the incidence of cancer or leukemia is an upper limit on the rate at which it is caused by radiation effects; in determining upper limits it is justifiable to select situations which minimize it. (author)

  11. IRON REDOX EQUILIBRIUM AND DIFFUSIVITY IN MIXED ALKALI-ALKALINE EARTH-SILICA GLASS MELTS

    Directory of Open Access Journals (Sweden)

    KI-DONG KIM

    2011-03-01

    Full Text Available Dependence of redox behavior and diffusivity of iron on temperature and composition was studied in mixed alkali-alkaline earth-silica glass melts by means of square wave voltammetry (SWV. The voltammograms showed that irrespective of K2O/(Na2O+K2O the peak potential due to Fe3+/Fe2+ moved toward negative direction with temperature decrease and the peak current showed a strong dependence on frequency at constant temperature. Iron diffusion coefficient versus melt viscosity showed a good linearity. The compositional dependence showed that the peak potential shifted to the positive direction with increase of K2O but a typical mixed alkali effect occurred in iron diffusion either at constant temperature or at constant viscosity.

  12. Effect of mixing methods and aggregate type on strength of hardened concrete

    International Nuclear Information System (INIS)

    Elhadi, S.

    2006-01-01

    The objective of the research contained in this paper is to study the effect on strength of concrete which can be caused by changing method of concrete mix with or without changing aggregate crushing value under hand or mechanical compaction, and to compare results obtained when nondestructive testing techniques are used. It has been found that all methods of mix design are nearly identical in predicting the strength under a known value of w/c ratio. Up to strength of about 30 N/mm 2 , hand and mechanical compaction seems to be identical in all methods of concrete mixing. Important results regarding destructive and non-destructive testing has been drawn from the study.(Author)

  13. Linear and nonlinear symmetrically loaded shells of revolution approximated with the finite element method

    International Nuclear Information System (INIS)

    Cook, W.A.

    1978-10-01

    Nuclear Material shipping containers have shells of revolution as a basic structural component. Analytically modeling the response of these containers to severe accident impact conditions requires a nonlinear shell-of-revolution model that accounts for both geometric and material nonlinearities. Present models are limited to large displacements, small rotations, and nonlinear materials. This report discusses a first approach to developing a finite element nonlinear shell of revolution model that accounts for these nonlinear geometric effects. The approach uses incremental loads and a linear shell model with equilibrium iterations. Sixteen linear models are developed, eight using the potential energy variational principle and eight using a mixed variational principle. Four of these are suitable for extension to nonlinear shell theory. A nonlinear shell theory is derived, and a computational technique used in its solution is presented

  14. Association between chewing-stimulated salivary flow under the effects of atropine and mixing ability assessed using a color-changeable chewing gum.

    Science.gov (United States)

    Kubota, Chieko; Kanazawa, Manabu; Hama, Yohei; Komagamine, Yuriko; Minakuchi, Shunsuke

    2017-10-01

    To assess the time course of chewing-stimulated salivary flow after oral atropine administration, and determine the association between chewing-stimulated salivary flow and mixing ability using color-changeable chewing gum in dentate adults. Ten healthy dentate adults were administered 1mg oral atropine to induce mouth dryness. The subjects' chewing-stimulated salivary flow was assessed using the Saxon test. They were then asked to rinse their mouth with tap water for 15s, and to chew on color-changeable chewing gum for 60s at a constant rate of 60 cycles per min. This procedure was performed before, and at 10-min intervals for up to 120min after the atropine administration. The experiment was repeated after 1 week. Steel's test was used to compare the chewing-stimulated salivary flow rates at each time point after atropine administration with the baseline value. The effect of the stimulated salivary flow rates on the degree of color change was analyzed using linear mixed effects models, with the stimulated salivary flow rates as fixed factors and subjects as the random factor. Chewing-stimulated salivary flow showed a significant decrease from 50 to 120min after oral atropine administration (Pchewing-stimulated salivary flow had a significant effect on the color change of the color-changeable chewing gum (Pchewing gum and chewing-stimulated salivary flow in dentate subjects. Copyright © 2017 Japan Prosthodontic Society. Published by Elsevier Ltd. All rights reserved.

  15. A Bayesian Approach to Functional Mixed Effect Modeling for Longitudinal Data with Binomial Outcomes

    Science.gov (United States)

    Kliethermes, Stephanie; Oleson, Jacob

    2014-01-01

    Longitudinal growth patterns are routinely seen in medical studies where individual and population growth is followed over a period of time. Many current methods for modeling growth presuppose a parametric relationship between the outcome and time (e.g., linear, quadratic); however, these relationships may not accurately capture growth over time. Functional mixed effects (FME) models provide flexibility in handling longitudinal data with nonparametric temporal trends. Although FME methods are well-developed for continuous, normally distributed outcome measures, nonparametric methods for handling categorical outcomes are limited. We consider the situation with binomially distributed longitudinal outcomes. Although percent correct data can be modeled assuming normality, estimates outside the parameter space are possible and thus estimated curves can be unrealistic. We propose a binomial FME model using Bayesian methodology to account for growth curves with binomial (percentage) outcomes. The usefulness of our methods is demonstrated using a longitudinal study of speech perception outcomes from cochlear implant users where we successfully model both the population and individual growth trajectories. Simulation studies also advocate the usefulness of the binomial model particularly when outcomes occur near the boundary of the probability parameter space and in situations with a small number of trials. PMID:24723495

  16. On Effective Radiative Forcing of Partial Internally and Externally Mixed Aerosols and Their Effects on Global Climate

    Science.gov (United States)

    Zhou, Chen; Zhang, Hua; Zhao, Shuyun; Li, Jiangnan

    2018-01-01

    The total effective radiative forcing (ERF) due to partial internally mixed (PIM) and externally mixed (EM) anthropogenic aerosols, as well as their climatic effects since the year of 1850, was evaluated and compared using the aerosol-climate online coupled model of BCC_AGCM2.0_CUACE/Aero. The influences of internal mixing (IM) on aerosol hygroscopicity parameter, optical properties, and concentration were considered. Generally, IM could markedly weaken the negative ERF and cooling effects of anthropogenic aerosols. The global annual mean ERF of EM anthropogenic aerosols from 1850 to 2010 was -1.87 W m-2, of which the aerosol-radiation interactive ERF (ERFari) and aerosol-cloud interactive ERF (ERFaci) were -0.49 and -1.38 W m-2, respectively. The global annual mean ERF due to PIM anthropogenic aerosols from 1850 to 2010 was -1.23 W m-2, with ERFari and ERFaci of -0.23 and -1.01 W m-2, respectively. The global annual mean surface temperature and water evaporation and precipitation were reduced by 1.74 K and 0.14 mm d-1 for EM scheme and 1.28 K and 0.11 mm d-1 for PIM scheme, respectively. However, the relative humidity near the surface was slightly increased for both mixing cases. The Intertropical Convergence Zone was southwardly shifted for both EM and PIM cases but was less southwardly shifted in PIM scheme due to the less reduction in atmospheric temperature in the midlatitude and low latitude of the Northern Hemisphere.

  17. Effects of seawater mixing on the mobility of trace elements in acid phosphogypsum leachates.

    Science.gov (United States)

    Papaslioti, Evgenia-Maria; Pérez-López, Rafael; Parviainen, Annika; Sarmiento, Aguasanta M; Nieto, José M; Marchesi, Claudio; Delgado-Huertas, Antonio; Garrido, Carlos J

    2018-02-01

    This research reports the effects of pH increase on contaminant mobility in phosphogypsum leachates by seawater mixing, as occurs with dumpings on marine environments. Acid leachates from a phosphogypsum stack located in the Estuary of Huelva (Spain) were mixed with seawater to achieve gradually pH7. Concentrations of Al, Fe, Cr, Pb and U in mixed solutions significantly decreased with increasing pH by sorption and/or precipitation processes. Nevertheless, this study provides insight into the high contribution of the phosphogypsum stack to the release of other toxic elements (Co, Ni, Cu, Zn, As, Cd and Sb) to the coastal areas, as 80-100% of their initial concentrations behaved conservatively in mixing solutions with no participation in sorption processes. Stable isotopes ruled out connexion between different phosphogypsum-related wastewaters and unveiled possible weathering inputs of estuarine waters to the stack. The urgency of adopting effective restoration measures in the study area is also stressed. Copyright © 2018 Elsevier Ltd. All rights reserved.

  18. Size effects in non-linear heat conduction with flux-limited behaviors

    Science.gov (United States)

    Li, Shu-Nan; Cao, Bing-Yang

    2017-11-01

    Size effects are discussed for several non-linear heat conduction models with flux-limited behaviors, including the phonon hydrodynamic, Lagrange multiplier, hierarchy moment, nonlinear phonon hydrodynamic, tempered diffusion, thermon gas and generalized nonlinear models. For the phonon hydrodynamic, Lagrange multiplier and tempered diffusion models, heat flux will not exist in problems with sufficiently small scale. The existence of heat flux needs the sizes of heat conduction larger than their corresponding critical sizes, which are determined by the physical properties and boundary temperatures. The critical sizes can be regarded as the theoretical limits of the applicable ranges for these non-linear heat conduction models with flux-limited behaviors. For sufficiently small scale heat conduction, the phonon hydrodynamic and Lagrange multiplier models can also predict the theoretical possibility of violating the second law and multiplicity. Comparisons are also made between these non-Fourier models and non-linear Fourier heat conduction in the type of fast diffusion, which can also predict flux-limited behaviors.

  19. Direction of Effects in Multiple Linear Regression Models.

    Science.gov (United States)

    Wiedermann, Wolfgang; von Eye, Alexander

    2015-01-01

    Previous studies analyzed asymmetric properties of the Pearson correlation coefficient using higher than second order moments. These asymmetric properties can be used to determine the direction of dependence in a linear regression setting (i.e., establish which of two variables is more likely to be on the outcome side) within the framework of cross-sectional observational data. Extant approaches are restricted to the bivariate regression case. The present contribution extends the direction of dependence methodology to a multiple linear regression setting by analyzing distributional properties of residuals of competing multiple regression models. It is shown that, under certain conditions, the third central moments of estimated regression residuals can be used to decide upon direction of effects. In addition, three different approaches for statistical inference are discussed: a combined D'Agostino normality test, a skewness difference test, and a bootstrap difference test. Type I error and power of the procedures are assessed using Monte Carlo simulations, and an empirical example is provided for illustrative purposes. In the discussion, issues concerning the quality of psychological data, possible extensions of the proposed methods to the fourth central moment of regression residuals, and potential applications are addressed.

  20. Generalized linear models with random effects unified analysis via H-likelihood

    CERN Document Server

    Lee, Youngjo; Pawitan, Yudi

    2006-01-01

    Since their introduction in 1972, generalized linear models (GLMs) have proven useful in the generalization of classical normal models. Presenting methods for fitting GLMs with random effects to data, Generalized Linear Models with Random Effects: Unified Analysis via H-likelihood explores a wide range of applications, including combining information over trials (meta-analysis), analysis of frailty models for survival data, genetic epidemiology, and analysis of spatial and temporal models with correlated errors.Written by pioneering authorities in the field, this reference provides an introduction to various theories and examines likelihood inference and GLMs. The authors show how to extend the class of GLMs while retaining as much simplicity as possible. By maximizing and deriving other quantities from h-likelihood, they also demonstrate how to use a single algorithm for all members of the class, resulting in a faster algorithm as compared to existing alternatives. Complementing theory with examples, many of...