Ding Yuzheng; Wang Taijie; Dai Guiliang
Because of Java's flexibility, portability, and relative simplicity, Java programming language has sparked considerable interest among software developers. The author presents the experience on converting a C++ off-line software prototype to Java. Some benefits of Java while converting the C++ prototype to Java and also some limitations of Java are described. Some of these limitations arise from the differences between Java and C++, Others are due to weakness of Java itself. The article also introduces some methods to work around Java's limitations
A currently available software solution to simulate neural development is Cx3D. However, this software is Java-based, and not ideal for high performance computing. This talk presents our step-by-step porting approach, that uses SWIG as a tool to interface C++ code from Java.
A software tool has been developed that will allow a user to estimate the toxicity for a variety of endpoints (such as acute aquatic toxicity). The software tool is coded in Java and can be accessed using a web browser (or alternatively downloaded and ran as a stand alone applic...
Titus Felix FURTUNĂ
Full Text Available Conceiving software solutions for statistical processing and algorithmic data analysis involves handling diverse data, fetched from various sources and in different formats, and presenting the results in a suggestive, tailorable manner. Our ongoing research aims to design programming technics for integrating R developing environment with Java programming language for interoperability at a source code level. The goal is to combine the intensive data processing capabilities of R programing language, along with the multitude of statistical function libraries, with the flexibility offered by Java programming language and platform, in terms of graphical user interface and mathematical function libraries. Both developing environments are multiplatform oriented, and can complement each other through interoperability. R is a comprehensive and concise programming language, benefiting from a continuously expanding and evolving set of packages for statistical analysis, developed by the open source community. While is a very efficient environment for statistical data processing, R platform lacks support for developing user friendly, interactive, graphical user interfaces (GUIs. Java on the other hand, is a high level object oriented programming language, which supports designing and developing performant and interactive frameworks for general purpose software solutions, through Java Foundation Classes, JavaFX and various graphical libraries. In this paper we treat both aspects of integration and interoperability that refer to integrating Java code into R applications, and bringing R processing sequences into Java driven software solutions. Our research has been conducted focusing on case studies concerning pattern recognition and cluster analysis.
Kan, Edwin P.; Uffelman, Hal; Wax, Allan H.
The software engineering design of the Flight Software Memory Tracker (FMT) Tool is discussed in this paper. FMT is a ground analysis software set, consisting of utilities and procedures, designed to track the flight software, i.e., images of memory load and updatable parameters of the computers on-board Cassini spacecraft. FMT is implemented in Java.
Gregersen, Allan Raundahl; Rasmussen, Michael; Jørgensen, Bo Nørregaard
The dynamic software updating system JRebel from Zeroturnaround has proven to be an efficient mean to improve developer productivity, as it allows developers to change the code of their applications while developing and testing them. Hence, developers no longer have to go through the tedious cycle......! with JRebel. The successful integration of these two systems will set a new standard for dynamic software updating in Java....
AN INTRODUCTION TO DESIGN PATTERNSDesign Patterns: Origin and HistoryArchitectural to Software Design PatternsWhat is a Design Pattern?More about Design PatternsAbout This BookUNIFIED MODELING LANGUAGE (UML)UML: A Quick ReferenceClass DiagramsSequence diagramsBASIC PATTERNSInterfaceDescriptionExamplePractice QuestionsAbstract Parent ClassDescriptionExamplePractice QuestionsPrivate MethodsDescriptionExamplePractice QuestionsAccessor MethodsDescriptionAccessor Method NomenclatureExampleDirect Reference versus Accessor MethodsPractice QuestionsConstant Data ManagerDescriptionExamplePractice Quest
The high-level contribution of this paper is to illustrate the development of generic solution strategies to remove software security vulnerabilities that could be identified using automated tools for source code analysis on software programs (developed in Java). We use the Source Code Analyzer and Audit Workbench automated tools, developed by HP Fortify Inc., for our testing purposes. We present case studies involving a file writer program embedded with features for password validation, and ...
Slamet, Isnandar; Agus Wibowo, Aryanto; Roswitha, Mania
The criteria for the domination of the distribution function has been used in the investment issues, momentum, agricultural production, and so on. One criteria of domination is stochastic dominance (SD). When this criteria is applied to the dominating area that has smaller value than the dominated area, then almost stochastic dominance (ASD) can be used. It this research, we apply the ASD criteria on data of expenditure per capita based on districts/cities in Central Java. Furthermore, we determine which year the expenditure per capita in the period 2009-2013 is the most dominating to know the level of poverty in Central Java. From the discussion, it can be concluded that the expenditure per capita in Central Java in 2013 dominates expenditure per capita in Central Java in 2009-2012. In other words, the level of poverty in Central Java in 2013 is lower than in 2009-2012.
Korsholm, Stephan Erbs
This thesis presents the analysis, design and implementation of the Hardware near Virtual Machine (HVM) - a Java virtual machine for embedded devices. The HVM supports the execution of Java programs on low-end embedded hard- ware environments with as little as a few kB of RAM and 32 kB of ROM....... The HVM is based on a Java-to-C translation mechanism and it produces selfcontained, strict ANSI-C code that has been specially crafted to allow it to be embedded into existing C based build and execution environments; environ- ments which may be based on non standard C compilers and libraries. The HVM...... does not require a POSIX-like OS, nor does it require a C runtime library to be present for the target. The main distinguishing feature of the HVM is to support the stepwise addition of Java into an existing C based build and execution environment for low-end embedded systems. This will allow...
This thesis presents the analysis, design and implementation of the Hardware near Virtual Machine (HVM) - a Java virtual machine for embedded devices. The HVM supports the execution of Java programs on low-end embedded hard- ware environments with as little as a few kB of RAM and 32 kB of ROM....... The HVM is based on a Java-to-C translation mechanism and it produces self- contained, strict ANSI-C code that has been specially crafted to allow it to be embedded into existing C based build and execution environments; environ- ments which may be based on non standard C compilers and libraries. The HVM...... does not require a POSIX-like OS, nor does it require a C runtime library to be present for the target. The main distinguishing feature of the HVM is to support the stepwise addition of Java into an existing C based build and execution environment for low-end embedded systems. This will allow...
Christensen, Aske Simon; Møller, Anders; Schwartzbach, Michael Ignatieff
We incorporate innovations from the project into the Java language to provide high-level features for Web service programming. The resulting language, JWIG, contains an advanced session model and a flexible mechanism for dynamic construction of XML documents, in particular XHTML. To support program...
Olszak, Andrzej; Jensen, Martin Lykke Rytter; Jørgensen, Bo Nørregaard
introduce the concept of runtime feature awareness that enables a running program to establish and make use of its own feature-code traceability links. We present an implementation of this idea, a dynamic-analysis Java library called JAwareness. JAwareness provides a meta-level architecture that can be non...
In the current object-oriented paradigm, software construction increasingly involves creating and utilizing "software components". These components can serve a variety of functions, from common algorithmic processes to database connectivity to graphical interfaces. The advantage of component architectures is that programmers can use pre-existing…
A computer software was written for the evaluation of mass attenuation coefficient (μ/ρ) and mass energy-absorption coefficient (μ /ρ) for body tissues and substitutes of arbitrary elemental composition and en percentage-by-weight of elemental constituents using the Java development platform which could run on any ...
Full Text Available The project follows the development of a Java Software Tool that extracts data from Flat File (Fixed Length Record Type, CSV (Comma Separated Values, and XLS (Microsoft Excel 97-2003 Worksheet file, apply transformation to those sources, and finally load the data into the end target RDBMS. The software refers to a process known as ETL (Extract Transform and Load. Those kinds of systems are called ETL systems.
QSPIN is a high level Java language API for experimentation in QC models used in the calculation of Ising spin glass ground states and related quadratic unconstrained binary optimization (QUBO) problems. The Java API is intended to facilitate research in advanced QC algorithms such as hybrid quantum-classical solvers, automatic selection of constraint and optimization parameters, and techniques for the correction and mitigation of model and solution errors. QSPIN includes high level solver objects tailored to the D-Wave quantum annealing architecture that implement hybrid quantum-classical algorithms [Booth et al.] for solving large problems on small quantum devices, elimination of variables via roof duality, and classical computing optimization methods such as GPU accelerated simulated annealing and tabu search for comparison. A test suite of documented NP-complete applications ranging from graph coloring, covering, and partitioning to integer programming and scheduling are provided to demonstrate current capabilities.
A. Yu. Bykov
Full Text Available Currently, in simulation there is a trend towards using the distributed software tools, particularly ones, which are using cloud technologies and the Internet. The article considers a simulation educational tool, implemented as a web application using the Java language with special Java class library developed for simulation. It is focused on a discrete event approach to modeling, similarly to the GPSS language, and intended for queuing systems simulation.The structure of the models obtained using this class library is similar to that of the GPSS language models. Also, the simulation language interpreter similar to GPSS is created using this class library, with some differences in the individual statements.Simulation experiments are performed on the server-side, and on client-side you must use a browser with standard functions to enter the source code into HTML-created form. Mobile devices can be used as clients. The source code of a model can be represented both in the Java language using a class library and in the language similar to GPSS.The simulation system implements functions especially for educational process. For example, there is possibility for a student to upload learning materials on the server, send developed software and reports of test control to the teacher via the Internet, and receive a detailed assessment of their results from the teacher. Also detailed results of passed tests in learning modules are entered, and some other functions are implemented in the system.As examples, the article considers models of the m/M/n/0 type queuing system in Java with a class library, and in the language similar to GPSS, shows simulation results, and presents the analytical model and calculations for this system. Analytical calculations proved that the modeling system is useful, as it overlaps simulation results with the acceptable error. Some approaches to the interaction with students through the Internet, used in modeling environment, can
The Matlab software is a one of the most advanced development tool for application in engineering practice. From our point of view the most important is the image processing toolbox, offering many built-in functions, including mathematical morphology, and implementation of a many artificial neural networks as AI. It is very popular platform for creation of the specialized program for image analysis, also in pathology. Based on the latest version of Matlab Builder Java toolbox, it is possible to create the software, serving as a remote system for image analysis in pathology via internet communication. The internet platform can be realized based on Java Servlet Pages with Tomcat server as servlet container. In presented software implementation we propose remote image analysis realized by Matlab algorithms. These algorithms can be compiled to executable jar file with the help of Matlab Builder Java toolbox. The Matlab function must be declared with the set of input data, output structure with numerical results and Matlab web figure. Any function prepared in that manner can be used as a Java function in Java Servlet Pages (JSP). The graphical user interface providing the input data and displaying the results (also in graphical form) must be implemented in JSP. Additionally the data storage to database can be implemented within algorithm written in Matlab with the help of Matlab Database Toolbox directly with the image processing. The complete JSP page can be run by Tomcat server. The proposed tool for remote image analysis was tested on the Computerized Analysis of Medical Images (CAMI) software developed by author. The user provides image and case information (diagnosis, staining, image parameter etc.). When analysis is initialized, input data with image are sent to servlet on Tomcat. When analysis is done, client obtains the graphical results as an image with marked recognized cells and also the quantitative output. Additionally, the results are stored in a server
Gu, Joyce Xiuweu-Xu; Wei, Michael Yang; Rao, Pulivarthi H; Lau, Ching C; Behl, Sanjiv; Man, Tsz-Kwong
With the increasing application of various genomic technologies in biomedical research, there is a need to integrate these data to correlate candidate genes/regions that are identified by different genomic platforms. Although there are tools that can analyze data from individual platforms, essential software for integration of genomic data is still lacking. Here, we present a novel Java-based program called CGI (Cytogenetics-Genomics Integrator) that matches the BAC clones from array-based comparative genomic hybridization (aCGH) to genes from RNA expression profiling datasets. The matching is computed via a fast, backend MySQL database containing UCSC Genome Browser annotations. This program also provides an easy-to-use graphical user interface for visualizing and summarizing the correlation of DNA copy number changes and RNA expression patterns from a set of experiments. In addition, CGI uses a Java applet to display the copy number values of a specific BAC clone in aCGH experiments side by side with the expression levels of genes that are mapped back to that BAC clone from the microarray experiments. The CGI program is built on top of extensible, reusable graphic components specifically designed for biologists. It is cross-platform compatible and the source code is freely available under the General Public License.
Joyce Xiuweu-Xu Gu
Full Text Available With the increasing application of various genomic technologies in biomedical research, there is a need to integrate these data to correlate candidate genes/regions that are identified by different genomic platforms. Although there are tools that can analyze data from individual platforms, essential software for integration of genomic data is still lacking. Here, we present a novel Java-based program called CGI (Cytogenetics-Genomics Integrator that matches the BAC clones from array-based comparative genomic hybridization (aCGH to genes from RNA expression profiling datasets. The matching is computed via a fast, backend MySQL database containing UCSC Genome Browser annotations. This program also provides an easy-to-use graphical user interface for visualizing and summarizing the correlation of DNA copy number changes and RNA expression patterns from a set of experiments. In addition, CGI uses a Java applet to display the copy number values of a specifi c BAC clone in aCGH experiments side by side with the expression levels of genes that are mapped back to that BAC clone from the microarray experiments. The CGI program is built on top of extensible, reusable graphic components specifically designed for biologists. It is cross-platform compatible and the source code is freely available under the General Public License.
McCullen, P.A.; Farthing, J.W.
The complex nature of the JET machine requires a large amount of control parameter preparation, selection and validation before a pulse may be started. Level-1 is defined as the centralized, cross-subsystem control of JET. Before it was introduced over 10 years ago, the Session Leader (SL) who is responsible for specifying the parameter settings for a JET pulse, had virtually no software available to help him except for a simple editor used for the creation of control waveforms. Most of the required parameter settings were calculated by hand and then passed on either verbally or via hand-written forms. These parameters were then set by a large number of people - Local Unit Responsible Officers (LUROs) and CODAS Duty Officers (CDOs) using a wide selection of dedicated software. At this time the Engineer in Charge (EiC) would largely depend on the LUROs to inform him that conditions were ready. He never set control parameters personally and had little or no software available to him to see what many of the settings were. The first implementation of Level-1 software went some way towards improving the task of pulse schedule preparation in that the SL could specify his requirements via a computer interface and store them in a database for later use. At that time the maximum number of parameters that could be handled was 500. (author)
Dhaliwal, Swarn S.
An investigation was undertaken to build the software foundation for the WHERE (Web-based Hyper-text Environment for Requirements Engineering) project. The TCM (Toolkit for Conceptual Modeling) was chosen as the foundation software for the WHERE project which aims to provide an environment for facilitating collaboration among geographically distributed people involved in the Requirements Engineering process. The TCM is a collection of diagram and table editors and has been implemented in the C++ programming language. The C++ implementation of the TCM was translated into Java in order to allow the editors to be used for building various functionality of the WHERE project; the WHERE project intends to use the Web as its communication back- bone. One of the limitations of the translated software (TcmJava), which militated against its use in the WHERE project, was persistent data management mechanisms which it inherited from the original TCM; it was designed to be used in standalone applications. Before TcmJava editors could be used as a part of the multi-user, geographically distributed applications of the WHERE project, a persistent storage mechanism must be built which would allow data communication over the Internet, using the capabilities of the Web. An approach involving features of Java, CORBA (Common Object Request Broker), the Web, a middle-ware (Java Relational Binding (JRB)), and a database server was used to build the persistent data management infrastructure for the WHERE project. The developed infrastructure allows a TcmJava editor to be downloaded and run from a network host by using a JDK 1.1 (Java Developer's Kit) compatible Web-browser. The aforementioned editor establishes connection with a server by using the ORB (Object Request Broker) software and stores/retrieves data in/from the server. The server consists of a CORBA object or objects depending upon whether the data is to be made persistent on a single server or multiple servers. The CORBA
Pro Java ME Apps gives you, the developer, the know-how required for writing sophisticated Java ME applications and for taking advantage of this huge potential market. Java ME is the largest mobile software platform in the world, supported by over 80% of all phones. You'll cover what Java ME is and how it compares to other mobile software platforms, how to properly design and structure Java ME applications, how to think like an experienced Java ME developer, what common problems and pitfalls you may run into, how to optimize your code, and many other key topics. Unlike other Java ME books out
S. Rehman; K. Mustafa
Several thousand software design vulnerabilities have been reported through established databases. But they need to be structured and classified to be optimally usable in the pursuit of minimal and effective mitigation mechanism. In order we developed a criterion set for a communicative description of the same to serve the purpose as a taxonomic description of security vulnerabilities, arising in the design phase of Software development lifecycle. This description is a part of an effort to id...
Deftereos, S; Lambrinoudakis, C; Andriopoulos, P; Farmakis, D; Aessopos, A
Beta-thalassaemia is a hereditary disease, the prevalence of which is high in persons of Mediterranean, African, and Southeast Asian ancestry. In Greece it constitutes an important public health problem. Beta-thalassaemia necessitates continuous and complicated health care procedures such as daily chelation; biweekly transfusions; and periodic cardiology, endocrinology, and hepatology evaluations. Typically, different care items are offered in different, often-distant, health care units, which leads to increased patient mobility. This is especially true in rural areas. Medical records of patients suffering from beta-thalassaemia are inevitably complex and grow in size very fast. They are currently paper-based, scattered over all units involved in the care process. This hinders communication of information between health care professionals and makes processing of the medical records difficult, thus impeding medical research. Our objective is to provide an electronic means for recording, communicating, and processing all data produced in the context of the care process of patients suffering from beta-thalassaemia. We have developed - and we present in this paper - Java-based Electronic Healthcare Record (EHCR) software, called JAnaemia. JAnaemia is a general-purpose EHCR application, which can be customized for use in all medical specialties. Customization for beta-thalassaemia has been performed in collaboration with 4 Greek hospitals. To be capable of coping with patient record diversity, JAnaemia has been based on the EHCR architecture proposed in the ENV 13606:1999 standard, published by the CEN/TC251 committee. Compliance with the CEN architecture also ensures that several additional requirements are fulfilled in relation to clinical comprehensiveness; to record sharing and communication; and to ethical, medico-legal, and computational issues. Special care has been taken to provide a user-friendly, form-based interface for data entry and processing. The
Probandari, Ari; Arcita, Akhda; Kothijah, Kothijah; Pamungkasari, Eti Poncorini
Maternal health remains a persisting public health challenge in Indonesia. Postnatal complications, in particular, are considered as maternal health problems priority that should be addressed. Conducting adequate care for postnatal complications will improve the quality of life of mothers and babies. With the universal health coverage implementation, the Indonesian government provides free maternal and child health services close to clients at the village level, which include postnatal care. Our study aimed to explore barriers to utilization of postnatal care at the village level in Klaten district, Central Java Province, Indonesia. A qualitative study was conducted in March 2015 - June 2016 in Klaten district, Central Java, Indonesia. We selected a total of 19 study participants, including eight mothers with postnatal complications, six family members, and five village midwives for in-depth interviews. We conducted a content analysis technique on verbatim transcripts of the interviews using open code software. This study found three categories of barriers to postnatal care utilization in villages: mother and family members' health literacy on postnatal care, sociocultural beliefs and practices, and health service responses. Most mothers did not have adequate knowledge and skills regarding postnatal care that reflected how they lacked awareness and practice of postnatal care. Inter-generational norms and myths hindered mothers from utilizing postnatal care and from having adequate nutritional intake during the postnatal period. Mothers and family members conducted unsafe self-treatment to address perceived minor postnatal complication. Furthermore, social power from extended family influenced the postnatal care health literacy for mother and family members. Postnatal care in the village lacked patient-centered care practices. Additionally, midwives' workloads and capacities to conduct postnatal information, education and counseling were also issues. Despite the
Full Text Available Abstract: Rural Bank (BPR was an important part of financial service industry in Indonesia.Their pivotal role on lending to SMEs in the rural area made their existence very strategic torural development. However, due to its operational scale, rural bank charged higher interestrate than commercial bank. The study estimated the cost efficiency of rural banks usingparametric approach. The result found that rural bank efficiency was very high. The two yearcost efficiency estimated using frontier 4.1 was 95% and median was 100%. The lowest of costefficiency level was 32%. It meant cost inefficiency of the banks under investigated was around10%. The cost efficiency level in 2006 was on average 95% and the median was 100%. It meantthat 50% or more of the observation enjoyed 100% cost efficiency. The minimum was only67%. It meant they operated at very efficient level, leaving only 5% inefficiency. In 2007, adramatic change on efficiency level was going on. The average efficiency was dropped from11% to 89.9% due to increase on interest rate and price level.
Pilgrim, Peter A
Java EE 7 Handbook is an example based tutorial with descriptions and explanations.""Java EE 7 Handbook"" is for the developer, designer, and architect aiming to get acquainted with the Java EE platform in its newest edition. This guide will enhance your knowledge about the Java EE 7 platform. Whether you are a long-term Java EE (J2EE) developer or an intermediate level engineer on the JVM with just Java SE behind you, this handbook is for you, the new contemporary Java EE 7 developer!
of software programs such as XCOM(Berger and. Hubbell,1987 ... programming language used in the design of the software are as ... interfaces (GUIs) and adding rich graphics functionality ... program at the first launching of the application. It.
Nurwahyudi Ragil; Maryono Maryono
Based on the Indonesia Disaster Prone Index 2013, Pati Regency is a high risk area of disaster and is ranked 11th level Central Java province while nationally ranked 156. Babalan Village located on the edge of Juwana River has disaster history from 2006-2014 shows flood disaster Giving the greatest probability and impact followed by rat pest, tornado, drought, fire. The public recognizes the signs of a continuous flooding of heavy rains accompanied by clouds all over the edge, the continuous ...
Alkhalid, A.; Alshayeb, M.; Mahmoud, S. A.
Enhancing, modifying or adapting the software to new requirements increases the internal software complexity. Software with high level of internal complexity is difficult to maintain. Software refactoring reduces software complexity and hence
Eichler, Marcelo Leandro; Xavier, Paulo Rafael; Araujo, Roberto Costa; Forte, Rafael Castro; Del Pino, Jose Claudio
The goals of this paper are to describe some characteristics of the pedagogical project of the "Carbopolis" software and some programming solutions that were found during the computational implementation of this software. Relative to the first goal, some pedagogical features that are considered necessary to developing computerized learning…
Possani, Rafael Guedes
Recent treatment planning systems depend strongly on CT images and the tendency is that the internal dosimetry procedures in nuclear medicine therapy be also based on images, such as magnetic resonance imaging (MRI) and computed tomography (CT), to extract anatomical and histological information, as well as, functional imaging or activities map as PET and SPECT. This information associated with a radiation transport simulation software is used to estimate internal dose in patients undergoing treatment in nuclear medicine. This work aims to re-engineer the software SCMS, which is an interface software between the Monte Carlo code MCNP, and the medical images, that carry information from the patient in treatment. In other words, the necessary information contained in the images are interpreted and presented in a specific format to the Monte Carlo MCNP code to perform the simulation of radiation transport. Therefore, the user does not need to understand the complex process of inputting data on MCNP, as the SCMS is responsible for automatically constructing anatomical data from the patient, as well as the radioactive source data. The SCMS was originally developed in Fortran-77. In this work it was rewritten in an object-oriented language (JAVA). New features and data options have also been incorporated into the software. Thus, the new software has a number of improvements, such as intuitive GUI and a menu for the selection of the energy spectra correspondent to a specific radioisotope stored in a XML data bank. The new version also supports new materials and the user can specify an image region of interest for the calculation of absorbed dose. (author)
Robot Arms Simulation Software development using Structured Programming Languages, Third Party Language, and Artificial Intelligence Programming Language are the common techniques in simulating robot arms movement. Those three techniques are having its strengths and weaknesses depend on several constraints such as robot type, degree of operation complexity to be simulated, operator skills, and also computer capability. This paper will discuss on Robot Arms Simulation Software (RSS) developmen...
Lucas, Blake C.; Bogovic, John A.; Carass, Aaron; Bazin, Pierre-Louis; Prince, Jerry L.; Pham, Dzung
Non-invasive neuroimaging techniques enable extraordinarily sensitive and specific in vivo study of the structure, functional response and connectivity of biological mechanisms. With these advanced methods comes a heavy reliance on computer-based processing, analysis and interpretation. While the neuroimaging community has produced many excellent academic and commercial tool packages, new tools are often required to interpret new modalities and paradigms. Developing custom tools and ensuring interoperability with existing tools is a significant hurdle. To address these limitations, we present a new framework for algorithm development that implicitly ensures tool interoperability, generates graphical user interfaces, provides advanced batch processing tools, and, most importantly, requires minimal additional programming or computational overhead. Java-based rapid prototyping with this system is an efficient and practical approach to evaluate new algorithms since the proposed system ensures that rapidly constructed prototypes are actually fully-functional processing modules with support for multiple GUI's, a broad range of file formats, and distributed computation. Herein, we demonstrate MRI image processing with the proposed system for cortical surface extraction in large cross-sectional cohorts, provide a system for fully automated diffusion tensor image analysis, and illustrate how the system can be used as a simulation framework for the development of a new image analysis method. The system is released as open source under the Lesser GNU Public License (LGPL) through the Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). PMID:20077162
Lucas, Blake C; Bogovic, John A; Carass, Aaron; Bazin, Pierre-Louis; Prince, Jerry L; Pham, Dzung L; Landman, Bennett A
Non-invasive neuroimaging techniques enable extraordinarily sensitive and specific in vivo study of the structure, functional response and connectivity of biological mechanisms. With these advanced methods comes a heavy reliance on computer-based processing, analysis and interpretation. While the neuroimaging community has produced many excellent academic and commercial tool packages, new tools are often required to interpret new modalities and paradigms. Developing custom tools and ensuring interoperability with existing tools is a significant hurdle. To address these limitations, we present a new framework for algorithm development that implicitly ensures tool interoperability, generates graphical user interfaces, provides advanced batch processing tools, and, most importantly, requires minimal additional programming or computational overhead. Java-based rapid prototyping with this system is an efficient and practical approach to evaluate new algorithms since the proposed system ensures that rapidly constructed prototypes are actually fully-functional processing modules with support for multiple GUI's, a broad range of file formats, and distributed computation. Herein, we demonstrate MRI image processing with the proposed system for cortical surface extraction in large cross-sectional cohorts, provide a system for fully automated diffusion tensor image analysis, and illustrate how the system can be used as a simulation framework for the development of a new image analysis method. The system is released as open source under the Lesser GNU Public License (LGPL) through the Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC).
Ignatchenko, Vladimir; Ignatchenko, Alexandr; Sinha, Ankit; Boutros, Paul C; Kislinger, Thomas
Venn diagrams are graphical representations of the relationships among multiple sets of objects and are often used to illustrate similarities and differences among genomic and proteomic datasets. All currently existing tools for producing Venn diagrams evince one of two traits; they require expertise in specific statistical software packages (such as R), or lack the flexibility required to produce publication-quality figures. We describe a simple tool that addresses both shortcomings, Venn Diagram Interactive Software (VennDIS), a JavaFX-based solution for producing highly customizable, publication-quality Venn, and Euler diagrams of up to five sets. The strengths of VennDIS are its simple graphical user interface and its large array of customization options, including the ability to modify attributes such as font, style and position of the labels, background color, size of the circle/ellipse, and outline color. It is platform independent and provides real-time visualization of figure modifications. The created figures can be saved as XML files for future modification or exported as high-resolution images for direct use in publications. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Java Pathfinder (JPF) is a verification and testing environment for Java that integrates model checking, program analysis, and testing. JPF consists of a custom-made Java Virtual Machine (JVM) that interprets bytecode, combined with a search interface to allow the complete behavior of a Java program to be analyzed, including interleavings of concurrent programs. JPF is implemented in Java, and its architecture is highly modular to support rapid prototyping of new features. JPF is an explicit-state model checker, because it enumerates all visited states and, therefore, suffers from the state-explosion problem inherent in analyzing large programs. It is suited to analyzing programs less than 10kLOC, but has been successfully applied to finding errors in concurrent programs up to 100kLOC. When an error is found, a trace from the initial state to the error is produced to guide the debugging. JPF works at the bytecode level, meaning that all of Java can be model-checked. By default, the software checks for all runtime errors (uncaught exceptions), assertions violations (supports Java s assert), and deadlocks. JPF uses garbage collection and symmetry reductions of the heap during model checking to reduce state-explosion, as well as dynamic partial order reductions to lower the number of interleavings analyzed. JPF is capable of symbolic execution of Java programs, including symbolic execution of complex data such as linked lists and trees. JPF is extensible as it allows for the creation of listeners that can subscribe to events during searches. The creation of dedicated code to be executed in place of regular classes is supported and allows users to easily handle native calls and to improve the efficiency of the analysis.
Full Text Available RNA editing is one of the post- or co-transcriptional processes that can lead to amino acid substitutions in protein sequences, alternative pre-mRNA splicing, and changes in gene expression levels. Although several methods have been suggested to identify RNA editing sites, there remains challenges to be addressed in distinguishing true RNA editing sites from its counterparts on genome and technical artifacts. In addition, there lacks a software framework to identify and visualize potential RNA editing sites. Here, we presented a software - 'RED' (RNA Editing sites Detector - for the identification of RNA editing sites by integrating multiple rule-based and statistical filters. The potential RNA editing sites can be visualized at the genome and the site levels by graphical user interface (GUI. To improve performance, we used MySQL database management system (DBMS for high-throughput data storage and query. We demonstrated the validity and utility of RED by identifying the presence and absence of C→U RNA-editing sites experimentally validated, in comparison with REDItools, a command line tool to perform high-throughput investigation of RNA editing. In an analysis of a sample data-set with 28 experimentally validated C→U RNA editing sites, RED had sensitivity and specificity of 0.64 and 0.5. In comparison, REDItools had a better sensitivity (0.75 but similar specificity (0.5. RED is an easy-to-use, platform-independent Java-based software, and can be applied to RNA-seq data without or with DNA sequencing data. The package is freely available under the GPLv3 license at http://github.com/REDetector/RED or https://sourceforge.net/projects/redetector.
Sun, Yongmei; Li, Xing; Wu, Di; Pan, Qi; Ji, Yuefeng; Ren, Hong; Ding, Keyue
RNA editing is one of the post- or co-transcriptional processes that can lead to amino acid substitutions in protein sequences, alternative pre-mRNA splicing, and changes in gene expression levels. Although several methods have been suggested to identify RNA editing sites, there remains challenges to be addressed in distinguishing true RNA editing sites from its counterparts on genome and technical artifacts. In addition, there lacks a software framework to identify and visualize potential RNA editing sites. Here, we presented a software - 'RED' (RNA Editing sites Detector) - for the identification of RNA editing sites by integrating multiple rule-based and statistical filters. The potential RNA editing sites can be visualized at the genome and the site levels by graphical user interface (GUI). To improve performance, we used MySQL database management system (DBMS) for high-throughput data storage and query. We demonstrated the validity and utility of RED by identifying the presence and absence of C→U RNA-editing sites experimentally validated, in comparison with REDItools, a command line tool to perform high-throughput investigation of RNA editing. In an analysis of a sample data-set with 28 experimentally validated C→U RNA editing sites, RED had sensitivity and specificity of 0.64 and 0.5. In comparison, REDItools had a better sensitivity (0.75) but similar specificity (0.5). RED is an easy-to-use, platform-independent Java-based software, and can be applied to RNA-seq data without or with DNA sequencing data. The package is freely available under the GPLv3 license at http://github.com/REDetector/RED or https://sourceforge.net/projects/redetector.
Olszak, Andrzej; Jørgensen, Bo Nørregaard
Feature-centric comprehension of source code is necessary for incorporating user-requested modifications during software evolution and maintenance. However, such comprehension is difficult to achieve in case of large object-oriented programs due to the size, complexity, and implicit character...... of mappings between features and source code. To support programmers in overcoming these difficulties, we present a feature-centric analysis tool, Featureous. Our tool extends the NetBeans IDE with mechanisms for efficient location of feature implementations in legacy source code, and an extensive analysis...
Fredy Pachón Barbera
Full Text Available En la simulación de una red de datos, se trata de evaluar, investigar y/o analizar su comportamiento en un ambiente real, siempre buscando la optimización los recursos. El análisis de la información es un punto clave para conocer fortalezas y debilidades de la red simulada. El objetivo de este artículo es mostrar el desarrollo de una herramienta de interpretación de trazas generadas por NS-2 basado en el lenguaje de programación Java y las variables estadísticas que se tuvieron en cuenta para la implementación, con el fin de facilitar el análisis de redes simuladas con la herramienta network simluator. Finalmente se logra la construcción del software, logrando determinar los cálculos de jitter, throughput y bytes enviados por cada nodo, a partir de las trazas generadas por NS-2.
Horstmann, Cay S
Big Java: Late Objects is a comprehensive introduction to Java and computer programming, which focuses on the principles of programming, software engineering, and effective learning. It is designed for a two-semester first course in programming for computer science students.
Java SOA Cookbook offers practical solutions and advice to programmers charged with implementing a service-oriented architecture (SOA) in their organization. Instead of providing another conceptual, high-level view of SOA, this cookbook shows you how to make SOA work. It's full of Java and XML code you can insert directly into your applications and recipes you can apply right away. The book focuses primarily on the use of free and open source Java Web Services technologies -- including Java SE 6 and Java EE 5 tools -- but you'll find tips for using commercially available tools as well. Jav
Full Text Available We present a multi-level formation model for complex software systems. The previous works extract the software systems to software networks for further studies, but usually investigate the software networks at the class level. In contrast to these works, our treatment of software systems as multi-level networks is more realistic. In particular, the software networks are organized by three levels of granularity, which represents the modularity and hierarchy in the formation process of real-world software systems. More importantly, simulations based on this model have generated more realistic structural properties of software networks, such as power-law, clustering and modularization. On the basis of this model, how the structure of software systems effects software design principles is then explored, and it could be helpful for understanding software evolution and software engineering practices.
Handayani, Trisakti; Widodo, Wahyu
General purpose of this research are: assessing the implementation of Permendagri no. 15 year 2008 about Gender Mainstreaming on Basic Education Levels in the East Java Province, analyze the problem of the implementation of Permendagri no. 15 year 2008 about Gender Mainstreaming on Basic Education Levels in the East Java Province and analyze the…
A software system is comprised of parts, which interact through shared interfaces. Certain qualities of integration, such as loose-coupling, requiring minimal changes to the software and fine-grained localisation of dependencies, have impact on the overall software quality. Current general-purpose
Nurwahyudi, Ragil; Maryono
Based on the Indonesia Disaster Prone Index 2013, Pati Regency is a high risk area of disaster and is ranked 11th level Central Java province while nationally ranked 156. Babalan Village located on the edge of Juwana River has disaster history from 2006-2014 shows flood disaster Giving the greatest probability and impact followed by rat pest, tornado, drought, fire. The public recognizes the signs of a continuous flooding of heavy rains accompanied by clouds all over the edge, the continuous rise of the Juwana River surface to overflow, ants, isoptera, and animals out of its nest, "Yuyu Bule", earthworms out, clear water for "Rowo floods ", Brownish water for the flash floods. Most residents have boats and can make rafts from makeshift materials (jerry cans, bamboo, banana stems). Make "Ranggon" at home for those who do not evacuate for a place to stay during the flood. Citizens elevate the kitchen (to evacuate people and goods / household furniture). Breeding Tyto Alba owl for rats pest control post-flood and controllers in the fields. Develop vegetable crops in the yard with viticulture pattern (upstairs) if flood can be moved and can eat vegetables during flood. Have food reserves for stock before outside help comes. Citizens initiate "Water Bath honesty" to meet the water needs during the dry season.
Full Text Available Based on the Indonesia Disaster Prone Index 2013, Pati Regency is a high risk area of disaster and is ranked 11th level Central Java province while nationally ranked 156. Babalan Village located on the edge of Juwana River has disaster history from 2006-2014 shows flood disaster Giving the greatest probability and impact followed by rat pest, tornado, drought, fire. The public recognizes the signs of a continuous flooding of heavy rains accompanied by clouds all over the edge, the continuous rise of the Juwana River surface to overflow, ants, isoptera, and animals out of its nest, “Yuyu Bule”, earthworms out, clear water for “Rowo floods ”, Brownish water for the flash floods. Most residents have boats and can make rafts from makeshift materials (jerry cans, bamboo, banana stems. Make “Ranggon” at home for those who do not evacuate for a place to stay during the flood. Citizens elevate the kitchen (to evacuate people and goods / household furniture. Breeding Tyto Alba owl for rats pest control post-flood and controllers in the fields. Develop vegetable crops in the yard with viticulture pattern (upstairs if flood can be moved and can eat vegetables during flood. Have food reserves for stock before outside help comes. Citizens initiate “Water Bath honesty” to meet the water needs during the dry season.
Ruan Guanglin; Huang Xianguo; Xing Shixiong
The difficulty in using fashion γ analysis software in low level measurement is discussed. The ROI report file of ORTEC operation system has been chosen as interface file to write γ analysis software for low-level measurement. The author gives software flowchart and applied example and discusses the existent problems
Version 5.0 of the Java 2 Standard Edition SDK is the most important upgrade since Java first appeared a decade ago. With Java 5.0, you'll not only find substantial changes in the platform, but to the language itself-something that developers of Java took five years to complete. The main goal of Java 5.0 is to make it easier for you to develop safe, powerful code, but none of these improvements makes Java any easier to learn, even if you've programmed with Java for years. And that means our bestselling hands-on tutorial takes on even greater significance. Learning Java is the most widely sou
Schoeberl, Martin; Thalinger, Christian; Korsholm, Stephan
Java, as a safe and platform independent language, avoids access to low-level I/O devices or direct memory access. In standard Java, low-level I/O it not a concern; it is handled by the operating system. However, in the embedded domain resources are scarce and a Java virtual machine (JVM) without...... an underlying middleware is an attractive architecture. When running the JVM on bare metal, we need access to I/O devices from Java; therefore we investigate a safe and efficient mechanism to represent I/O devices as first class Java objects, where device registers are represented by object fields. Access...... to those registers is safe as Java’s type system regulates it. The access is also fast as it is directly performed by the bytecodes getfield and putfield. Hardware objects thus provide an object-oriented abstraction of low-level hardware devices. As a proof of concept, we have implemented hardware objects...
Valtonen, Teemu; Kontkanen, Sini; Dillon, Patrick; Kukkonen, Jari; Väisänen, Pertti
This study focuses on upper secondary and vocational level teachers as users of social software i.e. what software they use during their leisure and work and for what purposes they use software in teaching. The study is theorised within a technological pedagogical content knowledge framework, the emphasis is especially on technological knowledge…
Reese, Richard M
If you are a Java programmer who wants to learn about the fundamental tasks underlying natural language processing, this book is for you. You will be able to identify and use NLP tasks for many common problems, and integrate them in your applications to solve more difficult problems. Readers should be familiar/experienced with Java software development.
Søndergaard, Hans; Thomsen, Bent; Ravn, Anders Peter
Just like other software, Java profiles benefits from refactoring when they have been used and have evolved for some time. This paper presents a refactoring of the Real-Time Specification for Java (RTSJ) and the Safety Critical Java (SCJ) profile (JSR-302). It highlights core concepts and makes...
Enhancing, modifying or adapting the software to new requirements increases the internal software complexity. Software with high level of internal complexity is difficult to maintain. Software refactoring reduces software complexity and hence decreases the maintenance effort. However, software refactoring becomes quite challenging task as the software evolves. The authors use clustering as a pattern recognition technique to assist in software refactoring activities at the package level. The approach presents a computer aided support for identifying ill-structured packages and provides suggestions for software designer to balance between intra-package cohesion and inter-package coupling. A comparative study is conducted applying three different clustering techniques on different software systems. In addition, the application of refactoring at the package level using an adaptive k-nearest neighbour (A-KNN) algorithm is introduced. The authors compared A-KNN technique with the other clustering techniques (viz. single linkage algorithm, complete linkage algorithm and weighted pair-group method using arithmetic averages). The new technique shows competitive performance with lower computational complexity. © 2011 The Institution of Engineering and Technology.
JPF is an explicit state software model checker for Java bytecode. Today, JPF is a swiss army knife for all sort of runtime based verification purposes. This basically means JPF is a Java virtual machine that executes your program not just once (like a normal VM), but theoretically in all possible ways, checking for property violations like deadlocks or unhandled exceptions along all potential execution paths. If it finds an error, JPF reports the whole execution that leads to it. Unlike a normal debugger, JPF keeps track of every step how it got to the defect.
Agten , Pieter; Nikiforakis , Nick; Strackx , Raoul; Groef , Willem ,; Piessens , Frank
Part 1: Keynotes; International audience; An important objective for low-level software security research is to develop techniques that make it harder to launch attacks that exploit implementation details of the system under attack. Baltopoulos and Gordon have summarized this as the principle of source-based reasoning for security: security properties of a software system should follow from review of the source code and its source-level semantics, and should not depend on details of the compi...
Loy, Marc; Eckstein, Robert; Elliott, James; Wood, Dave
Swing is a fully-featured user interface development kit for Java applications. Building on the foundations of the Abstract Window Toolkit (AWT), Swing enables cross-platform applications to use any of several pluggable look-and-feels. Swing developers can take advantage of its rich, flexible features and modular components, building elegant user interfaces with very little code. This second edition of Java Swing thoroughly covers all the features available in Java 2 SDK 1.3 and 1.4. More than simply a reference, this new edition takes a practical approach. It is a book by developers for
Java RMI contains a wealth of experience in designing and implementing Java's Remote Method Invocation. If you're a novice reader, you will quickly be brought up to speed on why RMI is such a powerful yet easy to use tool for distributed programming, while experts can gain valuable experience for constructing their own enterprise and distributed systems. With Java RMI, you'll learn tips and tricks for making your RMI code excel. The book also provides strategies for working with serialization, threading, the RMI registry, sockets and socket factories, activation, dynamic class downloading,
This software accepts the EOS MLS calibrated measurements of microwave radiances products and operational meteorological data, and produces a set of estimates of atmospheric temperature and composition. This version has been designed to be as flexible as possible. The software is controlled by a Level 2 Configuration File that controls all aspects of the software: defining the contents of state and measurement vectors, defining the configurations of the various forward models available, reading appropriate a priori spectroscopic and calibration data, performing retrievals, post-processing results, computing diagnostics, and outputting results in appropriate files. In production mode, the software operates in a parallel form, with one instance of the program acting as a master, coordinating the work of multiple slave instances on a cluster of computers, each computing the results for individual chunks of data. In addition, to do conventional retrieval calculations and producing geophysical products, the Level 2 Configuration File can instruct the software to produce files of simulated radiances based on a state vector formed from a set of geophysical product files taken as input. Combining both the retrieval and simulation tasks in a single piece of software makes it far easier to ensure that identical forward model algorithms and parameters are used in both tasks. This also dramatically reduces the complexity of the code maintenance effort.
Full Text Available As a high level development environment, the Java technologies offer support to the development of distributed applications, independent of the platform, providing a robust set of methods to access the databases, used to create software components on the server side, as well as on the client side. Analyzing the evolution of Java tools to access data, we notice that these tools evolved from simple methods that permitted the queries, the insertion, the update and the deletion of the data to advanced implementations such as distributed transactions, cursors and batch files. The client-server architectures allows through JDBC (the Java Database Connectivity the execution of SQL (Structured Query Language instructions and the manipulation of the results in an independent and consistent manner. The JDBC API (Application Programming Interface creates the level of abstractization needed to allow the call of SQL queries to any DBMS (Database Management System. In JDBC the native driver and the ODBC (Open Database Connectivity-JDBC bridge and the classes and interfaces of the JDBC API will be described. The four steps needed to build a JDBC driven application are presented briefly, emphasizing on the way each step has to be accomplished and the expected results. In each step there are evaluations on the characteristics of the database systems and the way the JDBC programming interface adapts to each one. The data types provided by SQL2 and SQL3 standards are analyzed by comparison with the Java data types, emphasizing on the discrepancies between those and the SQL types, but also the methods that allow the conversion between different types of data through the methods of the ResultSet object. Next, starting from the metadata role and studying the Java programming interfaces that allow the query of result sets, we will describe the advanced features of the data mining with JDBC. As alternative to result sets, the Rowsets add new functionalities that
Schoeberl, Martin; Dalsgaard, Andreas Engelbredt; Hansen, Rene Rydhof
The Certifiable Java for Embedded Systems (CJ4ES) project aimed to develop a prototype development environment and platform for safety-critical software for embedded applications. There are three core constituents: A profile of the Java programming language that is tailored for safety......-critical applications, a predictable Java processor built with FPGA technology, and an Eclipse based application development environment that binds the profile and the platform together and provides analyses that help to provide evidence that can be used as part of a safety case. This paper summarizes key contributions...
Mariano, Carl Lawrence
Lawall, Julia Laetitia; Muller, Gilles
This paper investigates the optimization of language-level checkpointing of Java programs. First, we describe how to systematically associate incremental checkpoints with Java classes. While being safe, the genericness of this solution induces substantial execution overhead. Second, to solve...
Avtonomov, Dmitry M; Raskind, Alexander; Nesvizhskii, Alexey I
Mass spectrometry (MS) coupled to liquid chromatography (LC) is a commonly used technique in metabolomic and proteomic research. As the size and complexity of LC-MS-based experiments grow, it becomes increasingly more difficult to perform quality control of both raw data and processing results. In a practical setting, quality control steps for raw LC-MS data are often overlooked, and assessment of an experiment's success is based on some derived metrics such as "the number of identified compounds". The human brain interprets visual data much better than plain text, hence the saying "a picture is worth a thousand words". Here, we present the BatMass software package, which allows for performing quick quality control of raw LC-MS data through its fast visualization capabilities. It also serves as a testbed for developers of LC-MS data processing algorithms by providing a data access library for open mass spectrometry file formats and a means of visually mapping processing results back to the original data. We illustrate the utility of BatMass with several use cases of quality control and data exploration.
This toolkit provides a common interface for displaying graphical user interface (GUI) components in stereo using either specialized stereo display hardware (e.g., liquid crystal shutter or polarized glasses) or anaglyph display (red/blue glasses) on standard workstation displays. An application using this toolkit will work without modification in either environment, allowing stereo software to reach a wider audience without sacrificing high-quality display on dedicated hardware. The toolkit is written in Java for use with the Swing GUI Toolkit and has cross-platform compatibility. It hooks into the graphics system, allowing any standard Swing component to be displayed in stereo. It uses the OpenGL graphics library to control the stereo hardware and to perform the rendering. It also supports anaglyph and special stereo hardware using the same API (application-program interface), and has the ability to simulate color stereo in anaglyph mode by combining the red band of the left image with the green/blue bands of the right image. This is a low-level toolkit that accomplishes simply the display of components (including the JadeDisplay image display component). It does not include higher-level functions such as disparity adjustment, 3D cursor, or overlays all of which can be built using this toolkit.
Hartel, Pieter H.; Moreau, Luc
We review the existing literature on Java safety, emphasizing formal approaches, and the impact of Java safety on small footprint devices such as smart cards. The conclusion is that while a lot of good work has been done, a more concerted effort is needed to build a coherent set of machine readable formal models of the whole of Java and its implementation. This is a formidable task but we believe it is essential to building trust in Java safety, and thence to achieve ITSEC level 6 or Common C...
Eppinger, Mark; Radnedge, Lyndsay; Andersen, Gary; Vietri, Nicholas; Severson, Grant; Mou, Sherry; Ravel, Jacques; Worsham, Patricia L
Growing evidence suggests that the plasmid repertoire of Yersinia pestis is not restricted to the three classical virulence plasmids. The Java 9 strain of Y. pestis is a biovar Orientalis isolate obtained from a rat in Indonesia. Although it lacks the Y. pestis-specific plasmid pMT, which encodes the F1 capsule, it retains virulence in mouse and non-human primate animal models. While comparing diverse Y. pestis strains using subtractive hybridization, we identified sequences in Java 9 that were homologous to a Y. enterocolitica strain carrying the transposon Tn2502, which is known to encode arsenic resistance. Here we demonstrate that Java 9 exhibits high levels of arsenic and arsenite resistance mediated by a novel promiscuous class II transposon, named Tn2503. Arsenic resistance was self-transmissible from Java 9 to other Y. pestis strains via conjugation. Genomic analysis of the atypical plasmid inventory of Java 9 identified pCD and pPCP plasmids of atypical size and two previously uncharacterized cryptic plasmids. Unlike the Tn2502-mediated arsenic resistance encoded on the Y. enterocolitica virulence plasmid; the resistance loci in Java 9 are found on all four indigenous plasmids, including the two novel cryptic plasmids. This unique mobilome introduces more than 105 genes into the species gene pool. The majority of these are encoded by the two entirely novel self-transmissible plasmids, which show partial homology and synteny to other enterics. In contrast to the reductive evolution in Y. pestis, this study underlines the major impact of a dynamic mobilome and lateral acquisition in the genome evolution of the plague bacterium.
Full Text Available Growing evidence suggests that the plasmid repertoire of Yersinia pestis is not restricted to the three classical virulence plasmids. The Java 9 strain of Y. pestis is a biovar Orientalis isolate obtained from a rat in Indonesia. Although it lacks the Y. pestis-specific plasmid pMT, which encodes the F1 capsule, it retains virulence in mouse and non-human primate animal models. While comparing diverse Y. pestis strains using subtractive hybridization, we identified sequences in Java 9 that were homologous to a Y. enterocolitica strain carrying the transposon Tn2502, which is known to encode arsenic resistance. Here we demonstrate that Java 9 exhibits high levels of arsenic and arsenite resistance mediated by a novel promiscuous class II transposon, named Tn2503. Arsenic resistance was self-transmissible from Java 9 to other Y. pestis strains via conjugation. Genomic analysis of the atypical plasmid inventory of Java 9 identified pCD and pPCP plasmids of atypical size and two previously uncharacterized cryptic plasmids. Unlike the Tn2502-mediated arsenic resistance encoded on the Y. enterocolitica virulence plasmid; the resistance loci in Java 9 are found on all four indigenous plasmids, including the two novel cryptic plasmids. This unique mobilome introduces more than 105 genes into the species gene pool. The majority of these are encoded by the two entirely novel self-transmissible plasmids, which show partial homology and synteny to other enterics. In contrast to the reductive evolution in Y. pestis, this study underlines the major impact of a dynamic mobilome and lateral acquisition in the genome evolution of the plague bacterium.
Cordelières, Fabrice P; Petit, Valérie; Kumasaka, Mayuko; Debeir, Olivier; Letort, Véronique; Gallagher, Stuart J; Larue, Lionel
Cell migration is a key biological process with a role in both physiological and pathological conditions. Locomotion of cells during embryonic development is essential for their correct positioning in the organism; immune cells have to migrate and circulate in response to injury. Failure of cells to migrate or an inappropriate acquisition of migratory capacities can result in severe defects such as altered pigmentation, skull and limb abnormalities during development, and defective wound repair, immunosuppression or tumor dissemination. The ability to accurately analyze and quantify cell migration is important for our understanding of development, homeostasis and disease. In vitro cell tracking experiments, using primary or established cell cultures, are often used to study migration as cells can quickly and easily be genetically or chemically manipulated. Images of the cells are acquired at regular time intervals over several hours using microscopes equipped with CCD camera. The locations (x,y,t) of each cell on the recorded sequence of frames then need to be tracked. Manual computer-assisted tracking is the traditional method for analyzing the migratory behavior of cells. However, this processing is extremely tedious and time-consuming. Most existing tracking algorithms require experience in programming languages that are unfamiliar to most biologists. We therefore developed an automated cell tracking program, written in Java, which uses a mean-shift algorithm and ImageJ as a library. iTrack4U is a user-friendly software. Compared to manual tracking, it saves considerable amount of time to generate and analyze the variables characterizing cell migration, since they are automatically computed with iTrack4U. Another major interest of iTrack4U is the standardization and the lack of inter-experimenter differences. Finally, iTrack4U is adapted for phase contrast and fluorescent cells.
Fabrice P Cordelières
Full Text Available Cell migration is a key biological process with a role in both physiological and pathological conditions. Locomotion of cells during embryonic development is essential for their correct positioning in the organism; immune cells have to migrate and circulate in response to injury. Failure of cells to migrate or an inappropriate acquisition of migratory capacities can result in severe defects such as altered pigmentation, skull and limb abnormalities during development, and defective wound repair, immunosuppression or tumor dissemination. The ability to accurately analyze and quantify cell migration is important for our understanding of development, homeostasis and disease. In vitro cell tracking experiments, using primary or established cell cultures, are often used to study migration as cells can quickly and easily be genetically or chemically manipulated. Images of the cells are acquired at regular time intervals over several hours using microscopes equipped with CCD camera. The locations (x,y,t of each cell on the recorded sequence of frames then need to be tracked. Manual computer-assisted tracking is the traditional method for analyzing the migratory behavior of cells. However, this processing is extremely tedious and time-consuming. Most existing tracking algorithms require experience in programming languages that are unfamiliar to most biologists. We therefore developed an automated cell tracking program, written in Java, which uses a mean-shift algorithm and ImageJ as a library. iTrack4U is a user-friendly software. Compared to manual tracking, it saves considerable amount of time to generate and analyze the variables characterizing cell migration, since they are automatically computed with iTrack4U. Another major interest of iTrack4U is the standardization and the lack of inter-experimenter differences. Finally, iTrack4U is adapted for phase contrast and fluorescent cells.
This paper assesses the presence of navigational hazards due to underestimation of charted depths originated from an establishment of a sea-level-related reference plane, i.e. datum. The study domain is situated in one of Indonesia's densest marine traffic, SW Java Sea, Indonesia. The assessment is based on the comparison of the authorized Chart Datum (CD), being uniformly located at 0.6 m below Mean Sea Level (MSL), and a spatially varying Lowest Astronomical Tide (LAT) generated for the purpose of this research. Hazards are considered here as the deviation of LAT from CD and quantified as the ratio of LAT -CD deviation with respect to the allowable Total Vertical Uncertainty (TVU), i.e. the international standard for accuracy of depth information on nautical charts. Underestimation of charted depth is expected for the case that LAT falls below CD. Such a risk magnifies with decreasing depths, as well as the increasing volume of traffic and draught of the vessel. It is found that most of the domain is in the interior of risk-free zone from using uniform CD. As much as 0.08 and 0.19 parts of the area are in zones where the uncertainty of CD contributes respectively to 50% and 30% of Total Vertical Uncertainty. These are zones where the hazard of navigation is expected to increase due to underestimated lowest tidal level.
Full Text Available FPGAs are an attractive platform for applications with high computation demand and low energy consumption requirements. However, design effort for FPGA implementations remains high—often an order of magnitude larger than design effort using high-level languages. Instead of this time-consuming process, high-level synthesis (HLS tools generate hardware implementations from algorithm descriptions in languages such as C/C++ and SystemC. Such tools reduce design effort: high-level descriptions are more compact and less error prone. HLS tools promise hardware development abstracted from software designer knowledge of the implementation platform. In this paper, we present an unbiased study of the performance, usability and productivity of HLS using AutoPilot (a state-of-the-art HLS tool. In particular, we first evaluate AutoPilot using the popular embedded benchmark kernels. Then, to evaluate the suitability of HLS on real-world applications, we perform a case study of stereo matching, an active area of computer vision research that uses techniques also common for image denoising, image retrieval, feature matching, and face recognition. Based on our study, we provide insights on current limitations of mapping general-purpose software to hardware using HLS and some future directions for HLS tool development. We also offer several guidelines for hardware-friendly software design. For popular embedded benchmark kernels, the designs produced by HLS achieve 4X to 126X speedup over the software version. The stereo matching algorithms achieve between 3.5X and 67.9X speedup over software (but still less than manual RTL design with a fivefold reduction in design effort versus manual RTL design.
Dräger, Andreas; Rodriguez, Nicolas; Dumousseau, Marine; Dörr, Alexander; Wrzodek, Clemens; Le Novère, Nicolas; Zell, Andreas; Hucka, Michael
The specifications of the Systems Biology Markup Language (SBML) define standards for storing and exchanging computer models of biological processes in text files. In order to perform model simulations, graphical visualizations and other software manipulations, an in-memory representation of SBML is required. We developed JSBML for this purpose. In contrast to prior implementations of SBML APIs, JSBML has been designed from the ground up for the Java programming language, and can therefore be used on all platforms supported by a Java Runtime Environment. This offers important benefits for Java users, including the ability to distribute software as Java Web Start applications. JSBML supports all SBML Levels and Versions through Level 3 Version 1, and we have strived to maintain the highest possible degree of compatibility with the popular library libSBML. JSBML also supports modules that can facilitate the development of plugins for end user applications, as well as ease migration from a libSBML-based backend. Source code, binaries and documentation for JSBML can be freely obtained under the terms of the LGPL 2.1 from the website http://sbml.org/Software/JSBML.
Full Text Available This paper describes the design and implementation of high performance numerical software in Java. Our primary goals are to characterize the performance of object‐oriented numerical software written in Java and to investigate whether Java is a suitable language for such endeavors. We have implemented JLAPACK, a subset of the LAPACK library in Java. LAPACK is a high‐performance Fortran 77 library used to solve common linear algebra problems. JLAPACK is an object‐oriented library, using encapsulation, inheritance, and exception handling. It performs within a factor of four of the optimized Fortran version for certain platforms and test cases. When used with the native BLAS library, JLAPACK performs comparably with the Fortran version using the native BLAS library. We conclude that high‐performance numerical software could be written in Java if a handful of concerns about language features and compilation strategies are adequately addressed.
Perun, Vincent S.; Jarnot, Robert F.; Wagner, Paul A.; Cofield, Richard E., IV; Nguyen, Honghanh T.; Vuu, Christina
This software is an improvement on Version 2, which was described in EOS MLS Level 1B Data Processing, Version 2.2, NASA Tech Briefs, Vol. 33, No. 5 (May 2009), p. 34. It accepts the EOS MLS Level 0 science/engineering data, and the EOS Aura spacecraft ephemeris/attitude data, and produces calibrated instrument radiances and associated engineering and diagnostic data. This version makes the code more robust, improves calibration, provides more diagnostics outputs, defines the Galactic core more finely, and fixes the equator crossing. The Level 1 processing software manages several different tasks. It qualifies each data quantity using instrument configuration and checksum data, as well as data transmission quality flags. Statistical tests are applied for data quality and reasonableness. The instrument engineering data (e.g., voltages, currents, temperatures, and encoder angles) is calibrated by the software, and the filter channel space reference measurements are interpolated onto the times of each limb measurement with the interpolates being differenced from the measurements. Filter channel calibration target measurements are interpolated onto the times of each limb measurement, and are used to compute radiometric gain. The total signal power is determined and analyzed by each digital autocorrelator spectrometer (DACS) during each data integration. The software converts each DACS data integration from an autocorrelation measurement in the time domain into a spectral measurement in the frequency domain, and estimates separately the spectrally, smoothly varying and spectrally averaged components of the limb port signal arising from antenna emission and scattering effects. Limb radiances are also calibrated.
Java Enterprise Edition (Java EE) continues to be one of the leading Java technologies and platforms. Beginning Java EE 7 is the first tutorial book on Java EE 7. Step by step and easy to follow, this book describes many of the Java EE 7 specifications and reference implementations, and shows them in action using practical examples. This definitive book also uses the newest version of GlassFish to deploy and administer the code examples. Written by an expert member of the Java EE specification request and review board in the Java Community Process (JCP), this book contains the best information possible, from an expert’s perspective on enterprise Java technologies.
In the continually changing and uncertain world of low level waste management, many generators in the US are faced with the prospect of having to store their waste on site for the indefinite future. This consequently increases the set of tasks performed by the generators in the areas of packaging, characterizing, classifying, screening (if a set of acceptance criteria applies), and managing the inventory for the duration of onsite storage. When disposal sites become available, it is expected that the work will require re-evaluating the waste packages, including possible re-processing, re-packaging, or re-classifying in preparation for shipment for disposal under the regulatory requirements of the time. In this day and age, when there is wide use of computers and computer literacy is at high levels, an important waste management tool would be an integrated software system that aids waste management personnel in conducting these tasks quickly and accurately. It has become evident that such an integrated radwaste management software system offers great benefits to radwaste generators both in the US and other countries. This paper discusses one such approach to integrated radwaste management utilizing some globally accepted radiological assessment software applications
Full Text Available Java applications are diverse, depending by use case, exist application that use small amount of memory till application that use huge amount, tens or hundreds of gigabits. Java Virtual Machine is designed to automatically manage memory for applications. Even in this case due diversity of hardware, software that coexist on the same system and applications itself, these automatic decision need to be accompanied by developer or system administrator to triage optimal memory use. After developer big role to write optimum code from memory allocation perspective , optimizing memory use at Java Virtual Machine and application level become in last year's one of the most important task. This is explained in special due increased demand in applications scalability.
Liqat, Umer; Georgiou, Kyriakos; Kerrison, Steve
The static estimation of the energy consumed by program executions is an important challenge, which has applications in program optimization and verification, and is instrumental in energy-aware software development. Our objective is to estimate such energy consumption in the form of functions...... on the input data sizes of programs. We have developed a tool for experimentation with static analysis which infers such energy functions at two levels, the instruction set architecture (ISA) and the intermediate code (LLVM IR) levels, and reflects it upwards to the higher source code level. This required...... the development of a translation from LLVM IR to an intermediate representation and its integration with existing components, a translation from ISA to the same representation, a resource analyzer, an ISA-level energy model, and a mapping from this model to LLVM IR. The approach has been applied to programs...
Løvengreen, Hans Henrik; Schwarzer, Jens Christian
We present an implementation of Ada 95's notion of protected objects in Java. The implementation comprises a class library supporting entry queues and a (pre-) compiler translating slightly decorated Java classes to pure Java classes utilizing the library.......We present an implementation of Ada 95's notion of protected objects in Java. The implementation comprises a class library supporting entry queues and a (pre-) compiler translating slightly decorated Java classes to pure Java classes utilizing the library....
Van Groningen, C. N.; Blachowicz, D.; Braun, M. D.; Simunich, K. L.; Widing, M. A.
Planning for the transportation of large amounts of equipment, troops, and supplies presents a complex problem. Many options, including modes of transportation, vehicles, facilities, routes, and timing, must be considered. The amount of data involved in generating and analyzing a course of action (e.g., detailed information about military units, logistical infrastructures, and vehicles) is enormous. Software tools are critical in defining and analyzing these plans. Argonne National Laboratory has developed ELIST (Enhanced Logistics Intra-theater Support Tool), a simulation-based decision support system, to assist military planners in determining the logistical feasibility of an intra-theater course of action. The current version of ELIST (v.8) contains a discrete event simulation developed using the Java programming language. Argonne selected Java because of its object-oriented framework, which has greatly facilitated entity and process development within the simulation, and because it fulfills a primary requirement for multi-platform execution. This paper describes the model, including setup and analysis, a high-level architectural design, and an evaluation of Java
Poirier, Diane; Smith, Charles A. (Technical Monitor)
The "CFD General Notation System" (CGNS) consists of a collection of conventions, and conforming software, for the storage and retrieval of Computational Fluid Dynamics (CFD) data. It facilitates the exchange of data between sites and applications, and helps stabilize the archiving of aerodynamic data. This effort was initiated in order to streamline the procedures in exchanging data and software between NASA and its customers, but the goal is to develop CGNS into a National Standard for the exchange of aerodynamic data. The CGNS development team is comprised of members from Boeing Commercial Airplane Group, NASA-Ames, NASA-Langley, NASA-Lewis, McDonnell-Douglas Corporation (now Boeing-St. Louis), Air Force-Wright Lab., and ICEM-CFD Engineering. The elements of CGNS address all activities associated with the storage of data on external media and its movement to and from application programs. These elements include: - The Advanced Data Format (ADF) Database manager, consisting of both a file format specification and its I/O software, which handles the actual reading and writing of data from and to external storage media; - The Standard Interface Data Structures (SIDS), which specify the intellectual content of CFD data and the conventions governing naming and terminology; - The SIDS-to-ADF File Mapping conventions, which specify the exact location where the CFD data defined by the SIDS is to be stored within the ADF file(s); and - The CGNS Mid-level Library, which provides CFD-knowledgeable routines suitable for direct installation into application codes. The CGNS Mid-level Library was designed to ease the implementation of CGNS by providing developers with a collection of handy I/O functions. Since knowledge of the ADF core is not required to use this library, it will greatly facilitate the task of interfacing with CGNS. There are currently 48 user callable functions that comprise the Mid-level library and are described in the Users Guide. The library is written in
Lindstrom, Gary; Mehlitz, Peter C.; Visser, Willem
The Real Time Specification for Java (RTSJ) is an augmentation of Java for real time applications of various degrees of hardness. The central features of RTSJ are real time threads; user defined schedulers; asynchronous events, handlers, and control transfers; a priority inheritance based default scheduler; non-heap memory areas such as immortal and scoped, and non-heap real time threads whose execution is not impeded by garbage collection. The Robust Software Systems group at NASA Ames Research Center has JAVA PATHFINDER (JPF) under development, a Java model checker. JPF at its core is a state exploring JVM which can examine alternative paths in a Java program (e.g., via backtracking) by trying all nondeterministic choices, including thread scheduling order. This paper describes our implementation of an RTSJ profile (subset) in JPF, including requirements, design decisions, and current implementation status. Two examples are analyzed: jobs on a multiprogramming operating system, and a complex resource contention example involving autonomous vehicles crossing an intersection. The utility of JPF in finding logic and timing errors is illustrated, and the remaining challenges in supporting all of RTSJ are assessed.
Sasaki, Akira; Suto, Keiko
Method of visualization programs using Java for the PC with the graphical user interface (GUI) is discussed, and applied to the visualization and analysis of 1D and 2D data from experiments and numerical simulations. Based on an investigation of programming techniques such as drawing graphics and event driven program, example codes are provided in which GUI is implemented using the Abstract Window Toolkit (AWT). The marked advantage of Java comes from the inclusion of library routines for graphics and networking as its language specification, which enables ordinary scientific programmers to make interactive visualization a part of their simulation codes. Moreover, the Java programs are machine independent at the source level. Object oriented programming (OOP) methods used in Java programming will be useful for developing large scientific codes which includes number of modules with better maintenance ability. (author)
The top-selling beginning Java book is now fully updated for Java 7! Java is the platform-independent, object-oriented programming language used for developing web and mobile applications. The revised version offers new functionality and features that have programmers excited, and this popular guide covers them all. This book helps programmers create basic Java objects and learn when they can reuse existing code. It's just what inexperienced Java developers need to get going quickly with Java 2 Standard Edition 7.0 (J2SE 7.0) and Java Development Kit 7.0 (JDK 7). Explores how the new version o
The open source JavaFX platform offers a Java-based approach to rich Internet application (RIA) development - an alternative to Adobe Flash/Flex and Microsoft Silverlight. At over 100 million downloads, the new JavaFX is poised to be a significant player now. Written by a JavaFX engineer and developer, this book is one of the first on the new JavaFX platform to give you the following: * The fundamentals of JavaFX scripting on desktop and mobile platforms * Examples of RIAs using JavaFX Graphics * Media and animation using JavaFX See how JavaFX gives you dynamic Java effects in your RIA applica
The LHCb experiment is a spectrometer dedicated to the study of heavy flavor at the LHC. The rate of proton-proton collisions at the LHC is 15 MHz, but disk space limitations mean that only 3 kHz can be written to tape for offline processing. For this reason the LHCb data acquisition system -- trigger -- plays a key role in selecting signal events and rejecting background. In contrast to previous experiments at hadron colliders like for example CDF or D0, the bulk of the LHCb trigger is implemented in software and deployed on a farm of 20k parallel processing nodes. This system, called the High Level Trigger (HLT) is responsible for reducing the rate from the maximum at which the detector can be read out, 1.1 MHz, to the 3 kHz which can be processed offline,and has 20 ms in which to process and accept/reject each event. In order to minimize systematic uncertainties, the HLT was designed from the outset to reuse the offline reconstruction and selection code, and is based around multiple independent and redunda...
Macedo, R.; Budd, G.; Ross, E.; Wells, P.
The software section of this journal presented new software programs that have been developed to help in the exploration and development of hydrocarbon resources. Software provider IHS Inc. has made additions to its geological and engineering analysis software tool, IHS PETRA, a product used by geoscientists and engineers to visualize, analyze and manage well production, well log, drilling, reservoir, seismic and other related information. IHS PETRA also includes a directional well module and a decline curve analysis module to improve analysis capabilities in unconventional reservoirs. Petris Technology Inc. has developed a software to help manage the large volumes of data. PetrisWinds Enterprise (PWE) helps users find and manage wellbore data, including conventional wireline and MWD core data; analysis core photos and images; waveforms and NMR; and external files documentation. Ottawa-based Ambercore Software Inc. has been collaborating with Nexen on the Petroleum iQ software for steam assisted gravity drainage (SAGD) producers. Petroleum iQ integrates geology and geophysics data with engineering data in 3D and 4D. Calgary-based Envirosoft Corporation has developed a software that reduces the costly and time-consuming effort required to comply with Directive 39 of the Alberta Energy Resources Conservation Board. The product includes an emissions modelling software. Houston-based Seismic Micro-Technology (SMT) has developed the Kingdom software that features the latest in seismic interpretation. Holland-based Joa Oil and Gas and Calgary-based Computer Modelling Group have both supplied the petroleum industry with advanced reservoir simulation software that enables reservoir interpretation. The 2010 software survey included a guide to new software applications designed to facilitate petroleum exploration, drilling and production activities. Oil and gas producers can use the products for a range of functions, including reservoir characterization and accounting. In
Havelund, Klaus; Rosu, Grigore; Clancy, Daniel (Technical Monitor)
We present recent work on the development Java PathExplorer (JPAX), a tool for monitoring the execution of Java programs. JPAX can be used during program testing to gain increased information about program executions, and can potentially furthermore be applied during operation to survey safety critical systems. The tool facilitates automated instrumentation of a program's late code which will then omit events to an observer during its execution. The observer checks the events against user provided high level requirement specifications, for example temporal logic formulae, and against lower level error detection procedures, for example concurrency related such as deadlock and data race algorithms. High level requirement specifications together with their underlying logics are defined in the Maude rewriting logic, and then can either be directly checked using the Maude rewriting engine, or be first translated to efficient data structures and then checked in Java.
Abi-Antoun, Marwan; Aldrich, Jonathan
.... As a result, none of the tool support for Java programs is available for AliasJava programs, making it harder to justify the case that Java programs are easier to evolve with Alias-Java annotations than without...
Rodgers, R P
Java, a new object-oriented computing language related to C++, is receiving considerable attention due to its use in creating network-sharable, platform-independent software modules (known as "applets") that can be used with the World Wide Web. The Web has rapidly become the most commonly used information-retrieval tool associated with the global computer network known as the Internet, and Java has the potential to further accelerate the Web's application to medical problems. Java's potentially wide acceptance due to its Web association and its own technical merits also suggests that it may become a popular language for non-Web-based, object-oriented computing. PMID:8880677
Find out why thousands have turned to Ivor Horton for learning Java Ivor Horton's approach is teaching Java is so effective and popular that he is one of the leading authors of introductory programming tutorials, with over 160,000 copies of his Java books sold. In this latest edition, whether you're a beginner or an experienced programmer switching to Java, you'll learn how to build real-world Java applications using Java SE 7. The author thoroughly covers the basics as well as new features such as extensions and classes; extended coverage of the Swing Application Framework; and he does it all
Goodman, Danny; Novitski, Paul; Rayl, Tia Gustaffl
Rios Rivas, Juan Ricardo
for Java aims at providing a reduced set of the Java programming language that can be used for systems that need to be certified at the highest levels of criticality. Safety-critical Java (SCJ) restricts how a developer can structure an application by providing a specific programming model...... and by restricting the set of methods and libraries that can be used. Furthermore, its memory model do not use a garbage-collected heap but scoped memories. In this thesis we examine the use of the SCJ specification through an implementation in a time-predictable, FPGA-based Java processor. The specification is now...
Buckley, Cathal; Mechan, Sarah; Macken-Walsh, Aine; Heanue, Kevin
Over the last number of decades intensification in the use nitrogen (N) and phosphorus (P) in agricultural production has lead to excessive accumulations of these nutrients in soils, groundwaters and surface water bodies (Sutton et al., 2011). According to the European Environment Agency (2012) despite some progress diffuse pollution from agriculture is still significant in more than 40% of Europe's water bodies in rivers and coastal waters, and in one third of the water bodies in lakes and transitional waters. Recently it was estimated that approximately 29% of monitored river channel length is polluted to some degree across the Republic of Ireland. Agricultural sources were suspected in 47 per cent of cases (EPA, 2012). Farm level management practices to reduce nutrient transfers from agricultural land to watercourses can be divided into source reduction and source interception approaches (Ribaudo et al., 2001). Source interception approaches involve capturing nutrients post mobilisation through policy instruments such as riparian buffer zones or wetlands. Conversely, the source reduction approach is preventative in nature and promotes strict management of nutrient at farm and field level to reduce risk of mobilisation in the first instance. This has the potential to deliver a double dividend of reduced nutrient loss to the wider ecosystem while maximising economic return to agricultural production at the field and farm levels. Adoption and use of nutrient management plans among farmers is far from the norm. This research engages key farmer and extension stakeholders to explore how current nutrient management planning software and outputs should be developed to make it more user friendly and usable in a practical way. An open innovation technology co-development approach was adopted to investigate what is demanded by the end users - farm advisors and farmers. Open innovation is a knowledge management strategy that uses the input of stakeholders to improve
Miller, Philip; Powers, Edward I. (Technical Monitor)
This session describes the architecture of Java Application Shell (JAS), a Swing-based framework for developing interactive Java applications. Java Application Shell is being developed by Commerce One, Inc. for NASA Goddard Space Flight Center Code 588. The purpose of JAS is to provide a framework for the development of Java applications, providing features that enable the development process to be more efficient, consistent and flexible. Fundamentally, JAS is based upon an architecture where an application is considered a collection of 'plugins'. In turn, a plug-in is a collection of Swing actions defined using XML and packaged in a jar file. Plug-ins may be local to the host platform or remotely-accessible through HTTP. Local and remote plugins are automatically discovered by JAS upon application startup; plugins may also be loaded dynamically without having to re-start the application. Using Extensible Markup Language (XML) to define actions, as opposed to hardcoding them in application logic, allows easier customization of application-specific operations by separating application logic from presentation. Through XML, a developer defines an action that may appear on any number of menus, toolbars, and buttons. Actions maintain and propagate enable/disable states and specify icons, tool-tips, titles, etc. Furthermore, JAS allows actions to be implemented using various scripting languages through the use of IBM's Bean Scripting Framework. Scripted action implementation is seamless to the end-user. In addition to action implementation, scripts may be used for application and unit-level testing. In the case of application-level testing, JAS has hooks to assist a script in simulating end-user input. JAS also provides property and user preference management, JavaHelp, Undo/Redo, Multi-Document Interface, Single-Document Interface, printing, and logging. Finally, Jini technology has also been included into the framework by means of a Jini services browser and the
The book is written in a Cookbook format with practical recipes aimed at helping you extend BPEL capabilities with Java.This book is aimed at Java developers who use BPEL programming to develop web services in SOA development. It is assumed that the readers are experienced with Java programming and SOA, but knowledge of BPEL is not necessarily required.
The Java Legacy Interface is designed to use Java for encapsulating native legacy code on small embedded platforms. We discuss why existing technologies for encapsulating legacy code (JNI) is not sufficient for an important range of small embedded platforms, and we show how the Java Legacy...... Interface offers this previously missing functionality. We describe an implementation of the Java Legacy Interface for a particular virtual machine, and how we have used this virtual machine to integrate Java with an existing, commercial, soft real-time, C/C++ legacy platform....
Barana, O.; Luchetta, A.; Manduchi, G.; Taliercio, C.
This paper describes the new Java components of MDSplus. These tools represent the evolution of some MDSplus components (MDSplus Current Developments and Future Directions, this conference) previously written in C, taking advantage from the multiplatform interoperability provided by the Java framework. The use of Java in the development of these tools provided an impressive reduction in the coding and test time. This is mainly due to the large set of ready-to-use components of the Java framework, and to the effective code re-use which can be achieved in the organization of Java applications
What if you could condense Java down to its very best features and build better applications with that simpler version? In this book, veteran Sun Labs engineer Jim Waldo reveals which parts of Java are most useful, and why those features make Java among the best programming languages available. Every language eventually builds up crud, Java included. The core language has become increasingly large and complex, and the libraries associated with it have grown even more. Learn how to take advantage of Java's best features by working with an example application throughout the book. You may not l
The top-selling beginning Java book is now fully updated! As an unstoppably platform-independent, object-oriented programming language, Java is used for developing web and mobile applications. In this up-to-date bestselling book, veteran author Barry Burd shows you how to create basic Java objects and clearly explains when you should simply reuse existing code. Explores how the new version of Java offers more robust functionality and new features such as closures to keep Java competitive with more syntax-friendly languages like Python and Ruby Covers object-oriented programming basics with Ja
Winter, Victor [Univ. of Nebraska, Omaha, NE (United States); McCoy, James A. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Guerrero, Jonathan [Univ. of Nebraska, Omaha, NE (United States); Reinke, Carl Werner [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Perry, James Thomas [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
Embedded systems form an integral part of our technological infrastructure and oftentimes play a complex and critical role within larger systems. From the perspective of reliability, security, and safety, strong arguments can be made favoring the use of Java over C in such systems. In part, this argument is based on the assumption that suitable subsets of Java’s APIs and extension libraries are available to embedded software developers. In practice, a number of Java-based embedded processors do not support the full features of the JVM. For such processors, source code migration is a mechanism by which key abstractions offered by APIs and extension libraries can made available to embedded software developers. The analysis required for Java source code-level library migration is based on the ability to correctly resolve element references to their corresponding element declarations. A key challenge in this setting is how to perform analysis for incomplete source-code bases (e.g., subsets of libraries) from which types and packages have been omitted. This article formalizes an approach that can be used to extend code bases targeted for migration in such a manner that the threats associated the analysis of incomplete code bases are eliminated.
.... One of the greatest challenges to the successful development of truly autonomous vehicles is the ability to link logically based high-level mission planning with low-level vehicle control software...
Yusof, Norliza Muhamad; Anuar, Aini Hayati; Isa, Norsyaheeda Natasha; Zulkafli, Sharifah Nursyuhada Syed; Sapini, Muhamad Luqman
This paper presents a developed java android application for KMV-Merton model in predicting the defaut rate of a firm. Predicting default rate is essential in the risk management area as default risk can be immediately transmitted from one entity to another entity. This is the reason default risk is known as a global risk. Although there are several efforts, instruments and methods used to manage the risk, it is said to be insufficient. To the best of our knowledge, there has been limited innovation in developing the default risk mathematical model into a mobile application. Therefore, through this study, default risk is predicted quantitatively using the KMV-Merton model. The KMV-Merton model has been integrated in the form of java program using the Android Studio Software. The developed java android application is tested by predicting the levels of default risk of the three different rated companies. It is found that the levels of default risk are equivalent to the ratings of the respective companies. This shows that the default rate predicted by the KMV-Merton model using the developed java android application can be a significant tool to the risk mangement field. The developed java android application grants users an alternative to predict level of default risk within less procedure.
De Beer, R.; Van Ormondt, D.
This work was done in the context of FP7 - PEOPLE Marie Curie Initial Training Network Project PITN-GA-2012-316679-TRANSACT. This report describes the development, installation and usage of the HSVD and HLSVD plugin for the jMRUI software system. The latter system is maintained by the TRANSACT EU
Kalendar, Ruslan; Tselykh, Timofey V; Khassenov, Bekbolat; Ramanculov, Erlan M
This chapter introduces the FastPCR software as an integrated tool environment for PCR primer and probe design, which predicts properties of oligonucleotides based on experimental studies of the PCR efficiency. The software provides comprehensive facilities for designing primers for most PCR applications and their combinations. These include the standard PCR as well as the multiplex, long-distance, inverse, real-time, group-specific, unique, overlap extension PCR for multi-fragments assembling cloning and loop-mediated isothermal amplification (LAMP). It also contains a built-in program to design oligonucleotide sets both for long sequence assembly by ligase chain reaction and for design of amplicons that tile across a region(s) of interest. The software calculates the melting temperature for the standard and degenerate oligonucleotides including locked nucleic acid (LNA) and other modifications. It also provides analyses for a set of primers with the prediction of oligonucleotide properties, dimer and G/C-quadruplex detection, linguistic complexity as well as a primer dilution and resuspension calculator. The program consists of various bioinformatical tools for analysis of sequences with the GC or AT skew, CG% and GA% content, and the purine-pyrimidine skew. It also analyzes the linguistic sequence complexity and performs generation of random DNA sequence as well as restriction endonucleases analysis. The program allows to find or create restriction enzyme recognition sites for coding sequences and supports the clustering of sequences. It performs efficient and complete detection of various repeat types with visual display. The FastPCR software allows the sequence file batch processing that is essential for automation. The program is available for download at http://primerdigital.com/fastpcr.html , and its online version is located at http://primerdigital.com/tools/pcr.html .
Glossner III, C.J.
In this dissertation, we describe the DELFT-JAVA engine - a 32-bit RISC-based architecture that provides high performance JAVA program execution. More specifically we describe a microarchitecture that accelerates JAVA execution and provide details of the DELFT-JAVA architecture for executing JAVA
Dea, Carl; Guime, Freddy; OConner, John; Juneau, Josh
Java 8 Recipes offers solutions to common programming problems encountered while developing Java-based applications. Fully updated with the newest features and techniques available, Java 8 Recipes provides code examples involving Lambdas, embedded scripting with Nashorn, the new date-time API, stream support, functional interfaces, and much more. Especial emphasis is given to features such as lambdas that are newly introduced in Java 8. Content is presented in the popular problem-solution format: Look up the programming problem that you want to solve. Read the solution. Apply the solution dir
Bøgholm, Thomas; Hansen, Rene Rydhof; Ravn, Anders Peter
A Java profile suitable for development of high integrity embedded systems is presented. It is based on event handlers which are grouped in missions and equipped with respectively private handler memory and shared mission memory. This is a result of our previous work on developing a Java profile......, and is directly inspired by interactions with the Open Group on their on-going work on a safety critical Java profile (JSR-302). The main contribution is an arrangement of the class hierarchy such that the proposal is a generalization of Real-Time Specification for Java (RTSJ). A further contribution...
This step-by-step guide is full of easy-to-follow code taken from real-world examples explaining the migration and integration of Scala in a Java project. If you are a Java developer or a Java architect, working in Java EE-based solutions and want to start using Scala in your daily programming, this book is ideal for you. This book will get you up and running quickly by adopting a pragmatic approach with real-world code samples. No prior knowledge of Scala is required.
Servlets are an exciting and important technology that ties Java to the Web, allowing programmers to write Java programs that create dynamic web content. Java Servlet Programming covers everything Java developers need to know to write effective servlets. It explains the servlet lifecycle, showing how to use servlets to maintain state information effortlessly. It also describes how to serve dynamic web content, including both HTML pages and multimedia data, and explores more advanced topics like integrated session tracking, efficient database connectivity using JDBC, applet-servlet communicat
Hartel, Pieter H.; de Jong, E.; de Jong, Eduard; Attali, Isabelle; Jensen, Thomas
Java Card Technology has provided a huge step forward in programming smart cards: from assembler to using a high level Object Oriented language. However, the authors have found some differences between the current Java Card version (2.1) and main stream Java that may restrict the benefits of using Java achievable in smartcard programming. In particular, efforts towards evaluating Java Card implementations at a high level of assurance may be hampered by the presence of these differences as wel...
Strøm, Tórur Biskopstø; Schoeberl, Martin
there exist several safety-critical Java framework implementations, there is a lack of safety-critical use cases implemented according to the specification. In this paper we present a 3D printer and its safety-critical Java level 1 implementation as a use case. With basis in the implementation we evaluate......It is desirable to bring Java technology to safety-critical systems. To this end The Open Group has created the safety-critical Java specification, which will allow Java applications, written according to the specification, to be certifiable in accordance with safety-critical standards. Although...
.... The experiment focused on the use of Java and Common Object Request Broker (CORBA) technologies as used in the development of a software visualization demonstrator application (the Attribute Cafe...
McInerney, Tim; Akhavan Sharif, M. Reza; Pashotanizadeh, Nasrin
Snakes (Active Contour Models) are powerful model-based image segmentation tools. Although researchers have proven them especially useful in medical image analysis over the past decade, Snakes have remained primarily in the academic world and they have not become widely used in clinical practice or widely available in commercial packages. A number of confusing and specialized variants exist and there has been no standard open-source implementation available. To address this problem, we present a Java Extensible Snakes System (JESS) that is general, portable, and extensible. The system uses Java Swing classes to allow for the rapid development of custom graphical user interfaces (GUI's). It also incorporates the Java Advanced Imaging(JAI) class library, which provide custom image preprocessing, image display and general image I/O. The Snakes algorithm itself is written in a hierarchical fashion, consisting of a general Snake class and several subclasses that span the main variants of Snakes including a new, powerful, robust subdivision-curve Snake. These subclasses can be easily and quickly extended and customized for any specific segmentation and analysis task. We demonstrate the utility of these classes for segmenting various anatomical structures from 2D medical images. We also demonstrate the effectiveness of JESS by using it to rapidly build a prototype semi-automatic sperm analysis system. The JESS software will be made publicly available in early 2005.
This article discusses web frameworks that are available to a software developer in Java language. It introduces MVC paradigm and some frameworks that implement it. The article presents an overview of Struts, Spring MVC, JSF Frameworks, as well as guidelines for selecting one of them as development environment.
Course Sessions (October 2006-March 2007) The Software and System Technologies Curriculum of the CERN Technical Training Programme offers comprehensive training in C++, Java, Perl, Python, XML, OO programming, JCOP/PVSS, database design and Oracle. In the PERL, C++, OO and Java course series there are some places available on the following course sessions, currently scheduled until March 2007: Object-Oriented Analysis and Design using UML: 17-19 October 2006 (3 days) JAVA 2 Enterprise Edition - Part 1: Web Applications: 19-20 October 2006 (2 days) JAVA - Level 1: 30 October -1 November 2006 (3 days) PERL 5 - Advanced Aspects: 2 November 2006 (1 day) C++ Programming Part 1 - Introduction to Object-Oriented Design and Programming: 14-16 November 2006 (3 days) JAVA - Level 2: 4-7 December 2006 (4 days) C++ Programming Part 2 - Advanced C++ and its Traps and Pitfalls: 12-15 December 2006 (4 days) JAVA 2 Enterprise Edition - Part 2: Enterprise JavaBeans: 18-20 December 2006 (3 days) C++ for Particle Physicists:...
A Java class library was developed to be able to access the data of the treatment planning system Varian Cadplan which was decommissioned in 2005. The library reads and encapsulates the most important patient data. It facilitates creating viewing software for CT slices, contours and isodoses. Keeping alive old Cadplan hardware is no longer necessary. The files can be stored on any server in the network of a department and they can be accessed from any workstation capable of running Java software. (orig.)
Conclusion: LabVIEW programming capabilities in the field of sound can be referred to the measurement of sound, frequency analysis, and sound control that actually the software acts like a sound level meter and sound analyzer. According to the mentioned features, we can use this software to analyze and process sound and vibration as a monitoring system.
Havelund, Klaus; Pressburger, Thomas
This paper describes a translator called JAVA PATHFINDER from JAVA to PROMELA, the "programming language" of the SPIN model checker. The purpose is to establish a framework for verification and debugging of JAVA programs based on model checking. This work should be seen in a broader attempt to make formal methods applicable "in the loop" of programming within NASA's areas such as space, aviation, and robotics. Our main goal is to create automated formal methods such that programmers themselves can apply these in their daily work (in the loop) without the need for specialists to manually reformulate a program into a different notation in order to analyze the program. This work is a continuation of an effort to formally verify, using SPIN, a multi-threaded operating system programmed in Lisp for the Deep-Space 1 spacecraft, and of previous work in applying existing model checkers and theorem provers to real applications.
Brito, Aline; Xavier, Laerte; Hora, Andre; Valente, Marco Tulio
Modern software development depends on APIs to reuse code and increase productivity. As most software systems, these libraries and frameworks also evolve, which may break existing clients. However, the main reasons to introduce breaking changes in APIs are unclear. Therefore, in this paper, we report the results of an almost 4-month long field study with the developers of 400 popular Java libraries and frameworks. We configured an infrastructure to observe all changes in these libraries and t...
Mann, H.; Bickert, M.
In almost all industrial branches radiometric measuring systems are being used today for a lot of different tasks. The most common field of this application are level gauging measurements by use of gamma radiation, i.e. for level detection as well as for level gauging over ranges of up to several meters. For our level gauge measuring system LB440 we developed a clearly arranged PC software, which allows starting, measuring and service of the level gauge. Over the RS232-interface the industrial computer can be connected with a Laptop or PC. The software is a supplemental or even a substitute for the operation over the frontpanel. The measuring system can be completely controlled by the Unibert PC-Software, realised by LabVIEW 5.1.1, which offers an interactive graphical user interface. The same functionality as in the ''embedded - software'' is available, completed with some additional functions. (orig.) [de
Empowering developers with the flexibility and power to start building Java applications for their Java-enabled mobile device or cell phone, this book covers sound HTTPS support, user interface API enhancements, the Mobile Media API, the Game API, and more.
de Mol, M.J.; Rensink, Arend; Hunt, James J.
This paper introduces an approach for adding graph transformation-based functionality to existing JAVA programs. The approach relies on a set of annotations to identify the intended graph structure, as well as on user methods to manipulate that structure, within the user’s own JAVA class
Hilderink, G.H.; Broenink, Johannes F.; Vervoort, Wiek; Bakkers, André; Bakkers, A.
The incorporation of multithreading in Java may be considered a significant part of the Java language, because it provides udimentary facilities for concurrent programming. However, we belief that the use of channels is a fundamental concept for concurrent programming. The channel approach as
Event selection in the Atlas High Level Trigger is accomplished to a large extent by reusing software components and event selection algorithms developed and tested in an offline environment. Many of these offline software modules are not specifically designed to run in a heavily multi-threaded online data flow environment. The Atlas High Level Trigger (HLT) framework based on the Gaudi and Atlas Athena frameworks, forms the interface layer, which allows the execution of the HLT selection and monitoring code within the online run control and data flow software. While such an approach provides a unified environment for trigger event selection across all of Atlas, it also poses strict requirements on the reused software components in terms of performance, memory usage and stability. Experience of running the HLT selection software in the different environments and especially on large multi-node trigger farms has been gained in several commissioning periods using preloaded Monte Carlo events, in data taking peri...
Glenstrup, Arne John; Nielsen, Michael; Skytte, Frederik
We present BEDnet, a Java based middleware for creating and maintaining a Bluetooth based mobile ad-hoc network (MANET). MANETs are key to nomadic computing: Mobile units can set up spontaneous local networks when needed, removing the need for fixed network infrastructure, either as wireless access....... Based on the Java JSR-82 specification, BEDnet is portable to a wide selection of mobile phones, and is publicly available as open source software. Experiments show that e.g. media streaming over Bluetooth is feasible, and that BEDnet is able to set up a scatternet within a couple of minutes...
Olszak, Andrzej; Jørgensen, Bo Nørregaard
. In absence of these mechanisms, feature implementations tend to be scattered and tangled in terms of object-oriented abstractions, making the code implementing features difficult to locate and comprehend. In this paper we present a semi-automatic method for feature-oriented remodularization of Java programs....... Our method uses execution traces to locate implementations of features, and Java packages to establish explicit feature modules. To evaluate usefulness of the approach, we present a case study where we apply our method to two real-world software systems. The obtained results indicate a significant...
Persson, John Stouby; Schlichter, Bjarne Rerup
Software companies are increasingly offshoring development to countries with high expertise at lower cost. Offshoring involves particular risk areas that if ignored increase the likelihood of failure. However, the offshoring client’s maturity level may influence the management of these risk areas....... Against this backdrop, we present an interpretive case study of how managers perceive and mitigate the risk areas in software development offshoring with a mature CMMI level 5 (Capability Maturity Model, Integrated) software company as the client. We find that managers perceive and mitigate most...
Riley, Christopher; Chatterjee, Siddhartha; Biswas, Rupak; Biegel, Bryan (Technical Monitor)
The computational science community is reluctant to write large-scale computationally -intensive applications in Java due to concerns over Java's poor performance, despite the claimed software engineering advantages of its object-oriented features. Naive Java implementations of numerical algorithms can perform poorly compared to corresponding Fortran or C implementations. To achieve high performance, Java applications must be designed with good performance as a primary goal. This paper presents the object-oriented design and implementation of two real-world applications from the field of Computational Fluid Dynamics (CFD): a finite-volume fluid flow solver (LAURA, from NASA Langley Research Center), and an unstructured mesh adaptation algorithm (2D_TAG, from NASA Ames Research Center). This work builds on our previous experience with the design of high-performance numerical libraries in Java. We examine the performance of the applications using the currently available Java infrastructure and show that the Java version of the flow solver LAURA performs almost within a factor of 2 of the original procedural version. Our Java version of the mesh adaptation algorithm 2D_TAG performs within a factor of 1.5 of its original procedural version on certain platforms. Our results demonstrate that object-oriented software design principles are not necessarily inimical to high performance.
Sekiyama, Makiko; Roosita, Katrin; Ohtsuka, Ryutaro
School lunch is not provided in public elementary schools in Indonesia, and students frequently buy and eat snacks at school. We hypothesized that providing a traditional Sundanese meal as school lunch would be beneficial for children in rural West Java. To test this hypothesis, we evaluated the effect of a 1-month school lunch intervention aiming at sustainability and based on children’s nutritional intake, hemoglobin and hematocrit levels, and body mass index (BMI). A lunch (including rice, vegetable dish, animal protein dish, plant protein dish, and fruit) containing one-third of the recommended daily allowance of energy was offered every school day for 1 month, targeting 68 fourth-grade elementary schoolchildren. At baseline, the prevalence of anemia was 33.3%. The prevalence of stunting and underweight were 32.4% and 2.9%, respectively, whereas that of overweight and obesity combined was 17.6%, indicating a double burden of malnutrition among the subjects. During the intervention, intakes of protein (p nutritional intakes and health statuses, implying its potential for reducing anemia and resolving the double burden of malnutrition among rural Indonesian schoolchildren. PMID:28805668
Melyana Nurul Widyawati
Full Text Available Background: Exclusive breastfeeding in Semarang during the past five years remains low. Only 20 to 64% of mothers were breastfed exclusively in 2010-2012. The incidence of postpartum blues was reported by 29.9% mothers, and mostly (56.6% was primiparous. Objective: This study aims to determine the effect of Loving Massage, aromatherapy, and a combination of Loving Massage and aromatherapy on stress levels, and changes in levels of prolactin in primiparous puerperal in Semarang. Method: A true experimental study with a randomized pretest-posttest control group design. Cluster random sampling was used to select 12 health centers from the 37 health centers in Semarang. A random assignment with a sealed envelope was performed to divide study participants into four groups; loving massage group, aromatherapy group, and a combination group of loving massage and aromatherapy, and a control group. A total of 52 primiparous puerperal mothers was involved, with 13 mothers were distributed equally in each group. Results: Loving Massage, aromatherapy, and a combination of Loving Massage and aromatherapy effectively changed mother’s stress and prolactin levels. Effectiveness of each treatment assessed from the average difference in scores before and after treatment. Combination of Loving Massage and aromatherapy had proven as the most effective treatment in reducing stress levels (11.61 ± 6.76, and increasing prolactin level (83.13 ± 6.41 ng/ml. Conclusions: Loving Massage & Aromatherapy shown to lower the levels of stress, and can increase the levels prolactin in postpartum primiparous. Therefore, it is recommended to provide Loving Massage therapy and aromatherapy to postpartum primiparous mothers.
Performance has been an important issue for Java developers ever since the first version hit the streets. Over the years, Java performance has improved dramatically, but tuning is essential to get the best results, especially for J2EE applications. You can never have code that runs too fast. Java Peformance Tuning, 2nd edition provides a comprehensive and indispensable guide to eliminating all types of performance problems. Using many real-life examples to work through the tuning process in detail, JPT shows how tricks such as minimizing object creation and replacing strings with arrays can
Ronan, M.; Kirkby, D.; Johnson, A.S.; Groot, D. de
An online monitoring framework has been written in the Java Language Environment to develop applications for monitoring special purpose detectors during commissioning of the PEP-II Interaction Region. PEP-II machine parameters and signals from several of the commissioning detectors are logged through VxWorks/EPICS and displayed by Java display applications. Remote clients are able to monitor the machine and detector performance using graphical displays and analysis histogram packages. In this paper, the design and implementation of the object-oriented Java framework is described. Illustrations of data acquisition, display and histograming applications are also given
The benefits of automatic-application code generation are widely accepted within the software engineering community. These benefits include raised abstraction level of application programming, shorter product development time, lower maintenance costs, and increased code quality and consistency. Surprisingly, code generation concepts have not yet found wide acceptance and use in the field of programmable logic controller (PLC) software development. Software engineers at Kennedy Space Center recognized the need for PLC code generation while developing the new ground checkout and launch processing system, called the Launch Control System (LCS). Engineers developed a process and a prototype software tool that automatically translates a high-level representation or specification of application software into ladder logic that executes on a PLC. All the computer hardware in the LCS is planned to be commercial off the shelf (COTS), including industrial controllers or PLCs that are connected to the sensors and end items out in the field. Most of the software in LCS is also planned to be COTS, with only small adapter software modules that must be developed in order to interface between the various COTS software products. A domain-specific language (DSL) is a programming language designed to perform tasks and to solve problems in a particular domain, such as ground processing of launch vehicles. The LCS engineers created a DSL for developing test sequences of ground checkout and launch operations of future launch vehicle and spacecraft elements, and they are developing a tabular specification format that uses the DSL keywords and functions familiar to the ground and flight system users. The tabular specification format, or tabular spec, allows most ground and flight system users to document how the application software is intended to function and requires little or no software programming knowledge or experience. A small sample from a prototype tabular spec application is
An easy-to-follow guide to reveal the new features of Java EE 7 and how to efficiently utilize them.Given the main objectives pursued, this book targets three groups of people with a knowledge of the Java language. They are:Beginners in the Java EE platform who would like to have an idea about the main specifications of Java EE 7.Developers who have experimented with previous versions of Java EE and who would like to explore the new features of Java EE 7.Building architects who want to learn how to put together the various Java EE 7 specifications for building robust and secure enterprise appl
Rios Rivas, Juan Ricardo; Schoeberl, Martin
The safety-critical Java (SCJ) specification provides a restricted set of the Java language intended for applications that require certification. In order to test the specification, implementations are emerging and the need to evaluate those implementations in a systematic way is becoming important....... In this paper we evaluate our SCJ implementation which is based on the Java Optimized Processor JOP and we measure different performance and timeliness criteria relevant to hard real-time systems. Our implementation targets Level 0 and Level1 of the specification and to test it we use a series of micro...
Event selection in the ATLAS High Level Trigger is accomplished to a large extent by reusing software components and event selection algorithms developed and tested in an offline environment. Many of these offline software modules are not specifically designed to run in a heavily multi-threaded online data flow environment. The ATLAS High Level Trigger (HLT) framework based on the GAUDI and ATLAS ATHENA frameworks, forms the interface layer, which allows the execution of the HLT selection and monitoring code within the online run control and data flow software. While such an approach provides a unified environment for trigger event selection across all of ATLAS, it also poses strict requirements on the reused software components in terms of performance, memory usage and stability. Experience of running the HLT selection software in the different environments and especially on large multi-node trigger farms has been gained in several commissioning periods using preloaded Monte Carlo events, in data taking periods with cosmic events and in a short period with proton beams from LHC. The contribution discusses the architectural aspects of the HLT framework, its performance and its software environment within the ATLAS computing, trigger and data flow projects. Emphasis is also put on the architectural implications for the software by the use of multi-core processors in the computing farms and the experiences gained with multi-threading and multi-process technologies.
Bigelow, Roberta; Moloney, Michael J.; Philpott, John; Rothberg, Joseph
The Consortium for Upper Level Physics Software (CUPS) has developed a comprehensive series of Nine Book/Software packages that Wiley will publish in FY `95 and `96. CUPS is an international group of 27 physicists, all with extensive backgrounds in the research, teaching, and development of instructional software. The project is being supported by the National Science Foundation (PHY-9014548), and it has received other support from the IBM Corp., Apple Computer Corp., and George Mason University. The Simulations being developed are: Astrophysics, Classical Mechanics, Electricity & Magnetism, Modern Physics, Nuclear and Particle Physics, Quantum Mechanics, Solid State, Thermal and Statistical, and Wave and Optics.
The general Java runtime environment is resource hungry and unfriendly for real-time systems. To reduce the resource consumption of Java in embedded systems, direct hardware support of the language is a valuable option. Furthermore, an implementation of the Java virtual machine in hardware enables...... worst-case execution time analysis of Java programs. This chapter gives an overview of current approaches to hardware support for embedded and real-time Java....
Shaykhian, Gholam Ali
The Java seminar covers the fundamentals of Java programming language. No prior programming experience is required for participation in the seminar. The first part of the seminar covers introductory concepts in Java programming including data types (integer, character, ..), operators, functions and constants, casts, input, output, control flow, scope, conditional statements, and arrays. Furthermore, introduction to Object-Oriented programming in Java, relationships between classes, using packages, constructors, private data and methods, final instance fields, static fields and methods, and overloading are explained. The second part of the seminar covers extending classes, inheritance hierarchies, polymorphism, dynamic binding, abstract classes, protected access. The seminar conclude by introducing interfaces, properties of interfaces, interfaces and abstract classes, interfaces and cailbacks, basics of event handling, user interface components with swing, applet basics, converting applications to applets, the applet HTML tags and attributes, exceptions and debugging.
The contributions of this paper are (1 Observing Java performance mysteries in the cloud, (2 Identifying the sources of performance mysteries, and (3 Obtaining optimal and reproducible performance data.
If you are an experienced Java developer, reactive programming will give you a new way to approach scalability and concurrency in your backend systems, without forcing you to switch programming languages.
Samuel, Putra A.; Widyaningsih, Yekti; Lestari, Dian
The objective of this study is modeling the Unemployment Rate (UR) in West Java, Central Java, and East Java, with rate of disease, infant mortality rate, educational level, population size, proportion of married people, and GDRP as the explanatory variables. Spatial factors are also considered in the modeling since the closer the distance, the higher the correlation. This study uses the secondary data from BPS (Badan Pusat Statistik). The data will be analyzed using Moran I test, to obtain the information about spatial dependence, and using Spatial Autoregressive modeling to obtain the information, which variables are significant affecting UR and how great the influence of the spatial factors. The result is, variables proportion of married people, rate of disease, and population size are related significantly to UR. In all three regions, the Hotspot of unemployed will also be detected districts/cities using Spatial Scan Statistics Method. The results are 22 districts/cities as a regional group with the highest unemployed (Most likely cluster) in the study area; 2 districts/cities as a regional group with the highest unemployed in West Java; 1 district/city as a regional groups with the highest unemployed in Central Java; 15 districts/cities as a regional group with the highest unemployed in East Java.
Supriyantini, E.; Santoso, A.; Soenardjo, N.
Mangrove Park waters area of Pekalongan City, Central Java, used to be an aquaculture field, now turning the function into a restoration-based mangrove area, and now it has undergone rehabilitation. The conditions may affect the distribution of nitrate and phosphate content. The objective of this study was to determine the content of nitrates and phosphates in sediments related to the density levels of mangrove Rhizophora sp. The method used in this research was a descriptive method, and sampling was done by purposive sampling method. Water and sediment sampling were conducted at three stations respectively, representing: no mangrove area but used as a residential and tourist area (station 1); less dense mangrove (station 2); and, the previously aquaculture field - or medium dense mangrove (station 3). The results showed that the content of nitrate and phosphate in the whole sediment showed a low fertility rate. Average nitrate content for station 1, station 2 and station 3 were 0.86 mg/100 g, 0.94 mg/100 g and 0.81 mg/100 g, respectively. The average phosphate content at each station were 1.14 mg/100 g, 0.04 mg/100 g and 0.05 mg/100 g, respectively. Except to the station 1 that was no vegetation anymore, the mangrove density levels at two other stations at study sites were relatively low to medium; at station 2 was 0.8 ind/10 m2 and at station 3 was 1.2 ind/10 m2. The role of nitrate and phosphate were for mangrove growth at the site.
Kono, Yuriko; Rahajoe, Joeni S; Hidayati, Nuril; Kodamatani, Hitoshi; Tomiyasu, Takashi
Mercury pollution is caused by artisanal and small-scale gold mining (ASGM) operations along the Cikaniki River (West Java, Indonesia). The atmosphere is one of the primary media through which mercury can disperse. In this study, atmospheric mercury levels are estimated using the native epiphytic fern Asplenium nidus complex (A. nidus) as a biomonitor; these estimates shed light on the atmospheric dispersion of mercury released during mining. Samples were collected from 8 sites along the Cikaniki Basin during September-November, 2008 and September-November, 2009. The A. nidus fronds that were attached to tree trunks 1-3m above the ground were collected and measured for total mercury concentration using cold vapor atomic absorption spectrometry (CVAAS) after acid-digestion. The atmospheric mercury was collected using porous gold collectors, and the concentrations were determined using double-amalgam CVAAS. The highest atmospheric mercury concentration, 1.8 × 10(3) ± 1.6 × 10(3) ngm(-3), was observed at the mining hot spot, and the lowest concentration of mercury, 5.6 ± 2.0 ngm(-3), was observed at the remote site from the Cikaniki River in 2009. The mercury concentrations in A. nidus were higher at the mining village (5.4 × 10(3) ± 1.6 × 10(3) ngg(-1)) than at the remote site (70 ± 30 ngg(-1)). The distribution of mercury in A. nidus was similar to that in the atmosphere; a significant correlation was observed between the mercury concentrations in the air and in A. nidus (r=0.895, P<0.001, n=14). The mercury levels in the atmosphere can be estimated from the mercury concentration in A. nidus using a regression equation: log (Hg(A.nidu)/ngg(-1))=0.740 log (Hg(Air)/ngm (-3)) - 1.324. Copyright © 2012 Elsevier Ltd. All rights reserved.
Sekiyama, Makiko; Roosita, Katrin; Ohtsuka, Ryutaro
School lunch is not provided in public elementary schools in Indonesia, and students frequently buy and eat snacks at school. We hypothesized that providing a traditional Sundanese meal as school lunch would be beneficial for children in rural West Java. To test this hypothesis, we evaluated the effect of a 1-month school lunch intervention aiming at sustainability and based on children's nutritional intake, hemoglobin and hematocrit levels, and body mass index (BMI). A lunch (including rice, vegetable dish, animal protein dish, plant protein dish, and fruit) containing one-third of the recommended daily allowance of energy was offered every school day for 1 month, targeting 68 fourth-grade elementary schoolchildren. At baseline, the prevalence of anemia was 33.3%. The prevalence of stunting and underweight were 32.4% and 2.9%, respectively, whereas that of overweight and obesity combined was 17.6%, indicating a double burden of malnutrition among the subjects. During the intervention, intakes of protein ( p < 0.05), calcium ( p < 0.05), and vitamin C ( p < 0.001) significantly increased, while that of fat significantly decreased ( p < 0.001). After the intervention, hemoglobin ( p < 0.05) and hematocrit ( p < 0.05) levels were significantly improved, thereby almost halving the rate of anemia. These changes were significantly larger in the baseline anemic group than the non-anemic group ( p < 0.01). BMI significantly increased in the baseline underweight/normal group ( p < 0.001) but not in the overweight/obese group. The school lunch intervention significantly improved nutritional intakes and health statuses, implying its potential for reducing anemia and resolving the double burden of malnutrition among rural Indonesian schoolchildren.
A package of computer codes has been developed to process and display nuclear structure and decay data stored in the ENSDF (Evaluated Nuclear Structure Data File) library. The codes were written in an object-oriented fashion using the java language. This allows for an easy implementation across multiple platforms as well as deployment on web pages. The structure of the different java classes that make up the package is discussed as well as several different implementations
This Short Cut tells you about tools that will improve the quality of your Java code, using checking above and beyond what the standard tools do, including: Using javac options, JUnit and assertions Making your IDE work harder Checking your source code with PMD Checking your compiled code (.class files) with FindBugs Checking your program's run-time behavior with Java PathFinder
Full Text Available Despite the code is rarely self-explanatory, the imperative programming languages are the most commonly used in our days by the programmers all over the world and Java is definitely the lead language in popularity. This paper tries to conclude if there are any chances to use the most popular programming language of the moment in a declarative manner, even if Java itself is an intrinsic imperative language.
Lassen, Kristian Bisgaard; Tjell, Simon
In this paper, we present a method for developing Java applications from Colored Control Flow Nets (CCFNs), which is a special kind of Colored Petri Nets (CPNs) that we introduce. CCFN makes an explicit distinction between the representation of: The system, the environment of the system, and the ......In this paper, we present a method for developing Java applications from Colored Control Flow Nets (CCFNs), which is a special kind of Colored Petri Nets (CPNs) that we introduce. CCFN makes an explicit distinction between the representation of: The system, the environment of the system......, and the interface between the system and the environment. Our translation maps CCFNs into Anno- tated Java Workflow Nets (AJWNs) as an intermediate step, and these AJWNs are finally mapped to Java. CCFN is intended to enforce the modeler to describe the system in an imperative manner which makes the subsequent...... translation to Java easier to define. The translation to Java preserves data dependencies and control-flow aspects of the source CCFN. This paper contributes to the model-driven software development paradigm, by showing how to model a system, environment, and their interface, as a CCFN and presenting a fully...
Ein praxisorientiertes Lehrbuch zur JEE 7 und zugleich ein Standardwerk, das Sie auf Ihrem Weg zum Enterprise-Entwickler begleitet. Inklusive Best Practices für leichtgewichtige Enterprise Applications, Standards zu servicebasierten Anwendungen, Persistence API, Dependency Injection, HTML5 und Performance-Tuning. Aus dem Inhalt: Grundlagen und Installation Software-Architektur mit Java EE Webanwendungen mit HTML5 und CSS3 Java Standard Tag Library Asynchrone Servlets und Non-blocking I/O Datenbanken anbinden mit der JDBC API Java Server Faces Datenbank-Organisation Java Persistence API Objektrelationales Mapping Transaktionssicherheit Performance-Tuning Internationalisierung Enterprise Java Beans WebSockets PrimeFaces Deployment Galileo Press heißt von jetzt an Rheinwerk Verlag.
Mitchell, Susan Marie
Uncontrollable costs, schedule overruns, and poor end product quality continue to plague the software engineering field. Innovations formulated with the expectation to minimize or eliminate cost, schedule, and quality problems have generally fallen into one of three categories: programming paradigms, software tools, and software process…
Han, Sang Hoon; Lim, Hogon; Ahn, Kwang Il
CONPAS (CONtainment Performance Analysis System) utilizes a methodology to treat containment phenomena in detail like APET but in simple way. In mid 2000's, KAERI has developed very fast cut set generator FTREX and PC's OS (Operating system) has changed into Windows 95. Thus, KAERI has developed new Level-1 PSA software, called AIMS-PSA (Advanced Information Management System for PSA) to replace KIRAP. Recently, KAERI has been developing an integrated PSA platform, called OCEANS (On-line Consolidator and Evaluator of All mode risk for Nuclear System), for the risk assessment of all power modes and all hazards. CONPAS for Level-2 PSA was developed in 1990's using the Visual Basic 6.0 compiler which is not supported any more. It needs to be updated for the integrated PSA software framework. This paper describes a study to incorporate the features of CONPAS into AIMS-PSA. The basic idea is to follow the approach of CONPAS, but in the integrated way. Various approaches for Level-2 PSA have been used since WASH-1400. APET approach of NUREG-1150 study would be most comprehensive and complex methodology for containment event tree analysis. CONPAS is the Level-2 PSA software to utilize an approach to treat containment phenomena in detail like APET but in simple way. But, new Level-2 PSA software is required to develop more integrated PSA framework. A modified approach of CONPAS is developed and incorporated in AIMS-PSA software that can handle Level-1 and Level-2 PSA in the integrated way (from the viewpoint of event tree and fault tree). AIMS-PSA combines whole Level-2 PSA model to produce a One Top fault tree and to generate cut sets in the same way as Level-1 PSA. Quantification results of Level-2 PSA such as frequency for each STC can be calculated from the minimal cut sets
Bart Pedersen, S.; Bozyigit, S.; Jackson, S.
The CERN Beam Instrumentation Group's software section has recently performed a study of the tools used to produce Java expert GUI (Graphical User Interface) applications. This paper will present the analysis that was made to understand the requirements for generic components and the resulting tools including a collection of Java components that have been made available for a wider audience. The new expert GUI has already given very good results. Users can easily and quickly create a Java project with a pre-defined structure that will allow them to run an application in two mouse clicks. At the same time, they are able to add whatever components they need to libraries that are now common to all. The use of Maven is not completed and has led to some integration problems for our Java software architecture. Nevertheless, the handling of the library dependencies and the archetypes are very useful
York, David W.; Ponyik, Joseph G.
A new software design and development effort has produced a Java (Sun Microsystems, Inc.) version of the award-winning Tempest software (refs. 1 and 2). In 1999, the Embedded Web Technology (EWT) team received a prestigious R&D 100 Award for Tempest, Java Version. In this article, "Tempest" will refer to the Java version of Tempest, a World Wide Web server for desktop or embedded systems. Tempest was designed at the NASA Glenn Research Center at Lewis Field to run on any platform for which a Java Virtual Machine (JVM, Sun Microsystems, Inc.) exists. The JVM acts as a translator between the native code of the platform and the byte code of Tempest, which is compiled in Java. These byte code files are Java executables with a ".class" extension. Multiple byte code files can be zipped together as a "*.jar" file for more efficient transmission over the Internet. Today's popular browsers, such as Netscape (Netscape Communications Corporation) and Internet Explorer (Microsoft Corporation) have built-in Virtual Machines to display Java applets.
Luckow, Kasper Søe; Thomsen, Bent; Frost, Christian
We present a novel tool for statically determining the Worst Case Execution Time (WCET) of Java Bytecode-based programs called Tool for Execution Time Analysis of Java bytecode (TetaJ). This tool differentiates itself from existing tools by separating the individual constituents of the execution...... environment into independent components. The prime benefit is that it can be used for execution environments featuring common embedded processors and software implementations of the JVM. TetaJ employs a model checking approach for statically determining WCET where the Java program, the JVM, and the hardware...
Utomo, Wiranto Herry; Istiyanto, Jazi Eko
Seam is based on Java EE, so it satisfies its framework duties in two fundamental ways: 1) Seam simplifies Java EE: Seam provides a number of shortcuts and simplifications to the standard Java EE framework, making it even easier to effectively use Java EE web and business components, 2) Seam extends Java EE: Seam integrates a number of new concepts and tools into the Java EE framework. These extensions b...
Andrade, M.A.; Silva, A.M. Marques da
The aim of this study is to implement a software for tomographic reconstruction of SPECT data from Nuclear Medicine with a flexible interface design, cross-platform, written in Java. Validation tests were performed based on SPECT simulated data. The results showed that the implemented algorithms and filters agree with the theoretical context. We intend to extend the system by implementing additional tomographic reconstruction techniques and Java threads, in order to provide simultaneously image processing. (author)
Bart Pedersen, S; Jackson, S
The CERN Beam Instrumentation Group’s software section has recently performed a study of the tools used to produce Java expert GUI applications. This paper will present the analysis that was made to understand the requirements for generic components and the resulting tools including a collection of Java components that have been made available for a wider audience. The paper will also discuss the prospect of using Maven as the deployment tool with its implications for developers and users.
Christensen, Henrik Bærbak
In the short time span available in a software architecture course, it is difficult to find a software system that is both interesting from an architectural perspective and so small that it does not overwhelm the students.We present TS-05 which is a bare 150 line Java "toy-system" that never...
Caska, James; Schoeberl, Martin
Java is slowly being accepted as a language and platform for embedded devices. However, the memory requirements of the Java library and runtime are still troublesome. A Java system is considered small when it requires less than 1 MB, and within the embedded domain small microcontollers with a few...... KB on-chip Flash memory and even less on-chip RAM are very common. For such small devices Java is a clearly challenging. In this paper we present the combination of the Java compiler Muvium for microcontrollers with the tiny soft-core Leros for an FPGA. To the best of our knowledge, the presented...... embedded Java system is the smallest Java system available. The Leros processor consumes less than 5% of the logic cells of the smallest FPGA from Altera and the Muvium compiler produces a JVM, including the Java application, that can execute in a few KB ROM and less than 1 KB RAM. The Leros processor...
Jackson, S; CERN. Geneva. AB Department
The AB/BDI software section is responsible for providing all the software necessary to develop, test, diagnose and maintain the different instruments produced by the group. Almost all graphical user interface applications produced by the group are written in Java and the Java Web Start architecture is used to launch these applications. Java Web Start provides a solid basis for application deployment, but lacks several key features essential for ensuring a proper and easily manageable working environment. This note describes an internally developed tool, which extends the Java Web Start functionality in order to provide these missing features.
Korsholm, Stephan; Schoeberl, Martin; Ravn, Anders Peter
An important part of implementing device drivers is to control the interrupt facilities of the hardware platform and to program interrupt handlers. Current methods for handling interrupts in Java use a server thread waiting for the VM to signal an interrupt occurrence. It means that the interrupt...... is handled at a later time, which has some disadvantages. We present constructs that allow interrupts to be handled directly and not at a later point decided by a scheduler. A desirable feature of our approach is that we do not require a native middleware layer but can handle interrupts entirely with Java...... code. We have implemented our approach using an interpreter and a Java processor, and give an example demonstrating its use....
Oostdam, M.; Verburg, R.M.; Lobbezoo, M.
Software service firms are challenged to maintain high service levels and to innovate at the same time. Therefore, valuable human resources need often to be balanced between innovation and operations related activities. In this paper we describe how such as a firm deals with these issues by
Harold, Elliotte Rusty
All of Java's Input/Output (I/O) facilities are based on streams, which provide simple ways to read and write data of different types. Java provides many different kinds of streams, each with its own application. The universe of streams is divided into four largecategories: input streams and output streams, for reading and writing binary data; and readers and writers, for reading and writing textual (character) data. You're almost certainly familiar with the basic kinds of streams--but did you know that there's a CipherInputStream for reading encrypted data? And a ZipOutputStream for automati
All true craftsmen need the best tools to do their finest work, and programmers are no different. Java Power Tools delivers 30 open source tools designed to improve the development practices of Java developers in any size team or organization. Each chapter includes a series of short articles about one particular tool -- whether it's for build systems, version control, or other aspects of the development process -- giving you the equivalent of 30 short reference books in one package. No matter which development method your team chooses, whether it's Agile, RUP, XP, SCRUM, or one of many other
Poll, Erik; Hartel, Pieter H.; de Jong, Eduard
Transacted Memory offers persistence, undoability and auditing. We present a Java/JML Reference Model of the Transacted Memory system on the basis of our earlier separate Z model and C implementation. We conclude that Java/JML combines the advantages of a high level specification in the JML part
Poll, Erik; Hartel, Pieter H.; de Jong, Eduard
Transacted Memory offers persistence, undoability and auditing. We present a Java/JML Reference Model of the Transacted Memory system on the basis of our earlier separate Z model and C implementation. We conclude that Java/JML combines the advantages of a high level specification in the JML part
Kim, Man Cheol
For the purpose of developing a consensus method for the reliability assessment of safety-critical digital instrumentation and control systems in nuclear power plants, several high level issues in reliability assessment of the safety-critical software based on Bayesian belief network modeling and statistical testing are discussed. Related to the Bayesian belief network modeling, the relation between the assessment approach and the sources of evidence, the relation between qualitative evidence and quantitative evidence, how to consider qualitative evidence, and the cause-consequence relation are discussed. Related to the statistical testing, the need of the consideration of context-specific software failure probabilities and the inability to perform a huge number of tests in the real world are discussed. The discussions in this paper are expected to provide a common basis for future discussions on the reliability assessment of safety-critical software. (author)
he Software and System Technologies Curriculum of the CERN Technical Training Programme offers comprehensive training in C++, Java, Perl, Python, XML, OO programming, JCOP/PVSS, database design and Oracle. In the PERL, C++, OO and Java course series there are some places available on the following course sessions, scheduled until the end of this year: Object-Oriented Analysis and Design using UML: 17-19 October 2006 (3 days) JAVA 2 Enterprise Edition - Part 1: Web Applications: 19-20 October 2006 (2 days) JAVA - Level 1: 30 Oct. -1 Nov. 2006 (3 days) PERL 5 - Advanced Aspects: 2 November 2006 (1 day) C++ Programming Part 1 - Introduction to Object-Oriented Design and Programming: 14-16 November 2006 (3 days) JAVA - Level 2: 4-7 December 2006 (4 days) C++ Programming Part 2 - Advanced C++ and its Traps and Pitfalls: 12-15 December 2006 (4 days) JAVA 2 Enterprise Edition - Part 2: Enterprise JavaBeans : 18.20 December 2006 (3 days) All the above sessions will be given in English, at the CERN Training Centre....
The Software and System Technologies Curriculum of the CERN Technical Training Programme offers comprehensive training in C++, Java, Perl, Python, XML, OO programming, JCOP/PVSS, database design and Oracle. In the PERL, C++, OO and Java course series there are some places available on the following course sessions, scheduled until the end of this year: PERL 5 - Introduction: 31.8-1.9.2006 (2 days) C++ for Particle Physicists: 16-20.10.2006 (6 half days, the popular course given by Paul Kunz) Object-Oriented Analysis and Design using UML: 17-19.10.2006 (3 days) JAVA 2 Enterprise Edition - Part 1: Web Applications: 19-20.10.2006 (2 days) JAVA - Level 1: 30.10-1.11.2006 (3 days) PERL 5 - Advanced Aspects: 2.11.2006 (1 day) C++ Programming Part 1 - Introduction to Object-Oriented Design and Programming: 14-16.11.2006 (3 days) JAVA - Level 2: 4-7.12.2006 (4 days) C++ Programming Part 2 - Advanced C++ and its Traps and Pitfalls: 12-15.12.2006 (4 days) JAVA 2 Enterprise Edition - Part 2: Enterprise JavaBea...
The Software and System Technologies Curriculum of the CERN Technical Training Programme offers comprehensive training in C++, Java, Perl, Python, XML, OO programming, JCOP/PVSS, database design and Oracle. In the Oracle, C++, OO and Java course series there are some places available on the following course sessions, currently scheduled until March 2007: Object-Oriented Analysis and Design using UML: 17-19 October 2006 (3 days) JAVA - Level 1: 30 October - 1 November 2006 (3 days) C++ Programming Part 1 - Introduction to Object-Oriented Design and Programming: 14-16 November 2006 (3 days) Oracle Database Server Administration: 23-29 November 2007 (5 days) JAVA - Level 2: 4-7 December 2006 (4 days) C++ Programming Part 2 - Advanced C++ and its Traps and Pitfalls: 12-15 December 2006 (4 days) JAVA 2 Enterprise Edition - Part 2: Enterprise JavaBeans: 18-20 December 2006 (3 days) JAVA 2 Enterprise Edition - Part 1: Web Applications: 15-16 January 2007 (2 days) C++ Programming Part 3 - Templates and the STL (St...
Knoll, P.; Hoell, K.; Koriska, K.; Mirzaei, S.; Koehn, H.
At present, medical applications applying World Wide Web (WWW) technology are mainly used to view static images and to retrieve some information. The Java platform is a relative new way of computing, especially designed for network computing and distributed applications which enables interactive connection between user and information via the WWW. The Java 2 Software Development Kit (SDK) including Java2D API, Java Remote Method Invocation (RMI) technology, Object Serialization and the Java Advanced Imaging (JAI) extension was used to achieve a robust, platform independent and network centric solution. Medical image processing software based on this technology is presented and adequate performance capability of Java is demonstrated by an iterative reconstruction algorithm for single photon emission computerized tomography (SPECT). (orig.)
Gal, Andreas; Probst, Christian; Franz, Michael
Existing Java verifiers perform an iterative data-flow analysis to discover the unambiguous type of values stored on the stack or in registers. Our novel verification algorithm uses abstract interpretation to obtain definition/use information for each register and stack location in the program...
Deil, Christoph; Boisson, Catherine; Kosack, Karl; Perkins, Jeremy; King, Johannes; Eger, Peter; Mayer, Michael; Wood, Matthew; Zabalza, Victor; Knödlseder, Jürgen; Hassan, Tarek; Mohrmann, Lars; Ziegler, Alexander; Khelifi, Bruno; Dorner, Daniela; Maier, Gernot; Pedaletti, Giovanna; Rosado, Jaime; Contreras, José Luis; Lefaucheur, Julien; Brügge, Kai; Servillat, Mathieu; Terrier, Régis; Walter, Roland; Lombardi, Saverio
In gamma-ray astronomy, a variety of data formats and proprietary software have been traditionally used, often developed for one specific mission or experiment. Especially for ground-based imaging atmospheric Cherenkov telescopes (IACTs), data and software are mostly private to the collaborations operating the telescopes. However, there is a general movement in science towards the use of open data and software. In addition, the next-generation IACT instrument, the Cherenkov Telescope Array (CTA), will be operated as an open observatory. We have created a Github organisation at https://github.com/open-gamma-ray-astro where we are developing high-level data format specifications. A public mailing list was set up at https://lists.nasa.gov/mailman/listinfo/open-gamma-ray-astro and a first face-to-face meeting on the IACT high-level data model and formats took place in April 2016 in Meudon (France). This open multi-mission effort will help to accelerate the development of open data formats and open-source software for gamma-ray astronomy, leading to synergies in the development of analysis codes and eventually better scientific results (reproducible, multi-mission). This write-up presents this effort for the first time, explaining the motivation and context, the available resources and process we use, as well as the status and planned next steps for the data format specifications. We hope that it will stimulate feedback and future contributions from the gamma-ray astronomy community.
Wang, Dongyan; Lin, Bo; Zhang, Jun
In this paper, we present JIP - Java Image Processing on the Internet, a new Internet based application for remote education and software presentation. JIP offers an integrate learning environment on the Internet where remote users not only can share static HTML documents and lectures notes, but also can run and reuse dynamic distributed software components, without having the source code or any extra work of software compilation, installation and configuration. By implementing a platform-independent distributed computational model, local computational resources are consumed instead of the resources on a central server. As an extended Java applet, JIP allows users to selected local image files on their computers or specify any image on the Internet using an URL as input. Multimedia lectures such as streaming video/audio and digital images are integrated into JIP and intelligently associated with specific image processing functions. Watching demonstrations an practicing the functions with user-selected input data dramatically encourages leaning interest, while promoting the understanding of image processing theory. The JIP framework can be easily applied to other subjects in education or software presentation, such as digital signal processing, business, mathematics, physics, or other areas such as employee training and charged software consumption.
Wang Liang; Chinese Academy of Sciences, Beijing; Zhu Kejun; Zhao Jingwei
Online single event monitoring is important to BESIII DAQ System. Java3D is extension of Java Language in 3D technology, XML data binding is more efficient to handle XML document than SAX and DOM. This paper mainly introduce the implementation of BESIII single event monitoring system with Java3D and XML data binding, and interface for track fitting software with JNI technology. (authors)
Full Text Available Adaptive domain decomposition exemplifies the problem of integrating heterogeneous software components with intermediate coupling granularity. This paper describes an experiment where a data‐parallel (HPF client interfaces with a sequential computation server through Java. We show that seamless integration of data‐parallelism is possible, but requires most of the tools from the Java palette: Java Native Interface (JNI, Remote Method Invocation (RMI, callbacks and threads.
Davis, T Gene
Learn the guidelines of integrating Java with native Mac OS X applications with this Devloper Reference book. Java is used to create nearly every type of application that exists and is one of the most required skills of employers seeking computer programmers. Java code and its libraries can be integrated with Mac OS X features, and this book shows you how to do just that. You'll learn to write Java programs on OS X and you'll even discover how to integrate them with the Cocoa APIs.: Shows how Java programs can be integrated with any Mac OS X feature, such as NSView widgets or screen savers; Re
Quick and painless Java programming with expert multimedia instruction Java Programming 24-Hour Trainer, 2nd Edition is your complete beginner's guide to the Java programming language, with easy-to-follow lessons and supplemental exercises that help you get up and running quickly. Step-by-step instruction walks you through the basics of object-oriented programming, syntax, interfaces, and more, before building upon your skills to develop games, web apps, networks, and automations. This second edition has been updated to align with Java SE 8 and Java EE 7, and includes new information on GUI b
O'Mullane, William; Luri, Xavier; Parsons, Paul; Lammers, Uwe; Hoar, John; Hernandez, Jose
In recent years Java has matured to a stable easy-to-use language with the flexibility of an interpreter (for reflection etc.) but the performance and type checking of a compiled language. When we started using Java for astronomical applications around 1999 they were the first of their kind in astronomy. Now a great deal of astronomy software is written in Java as are many business applications. We discuss the current environment and trends concerning the language and present an actual example of scientific use of Java for high-performance distributed computing: ESA's mission Gaia. The Gaia scanning satellite will perform a galactic census of about 1,000 million objects in our galaxy. The Gaia community has chosen to write its processing software in Java. We explore the manifold reasons for choosing Java for this large science collaboration. Gaia processing is numerically complex but highly distributable, some parts being embarrassingly parallel. We describe the Gaia processing architecture and its realisation in Java. We delve into the astrometric solution which is the most advanced and most complex part of the processing. The Gaia simulator is also written in Java and is the most mature code in the system. This has been successfully running since about 2005 on the supercomputer "Marenostrum" in Barcelona. We relate experiences of using Java on a large shared machine. Finally we discuss Java, including some of its problems, for scientific computing.
Hartel, Pieter H.; de Jong, E.; de Jong, Eduard; Attali, Isabelle; Jensen, Thomas
Java Card Technology has provided a huge step forward in programming smart cards: from assembler to using a high level Object Oriented language. However, the authors have found some differences between the current Java Card version (2.1) and main stream Java that may restrict the benefits of using
Hubert, Laurent; Barré, Nicolas; Besson, Frédéric; Demange, Delphine; Jensen, Thomas; Monfort, Vincent; Pichardie, David; Turpin, Tiphaine
Static analysis is a powerful technique for automatic verification of programs but raises major engineering challenges when developing a full-fledged analyzer for a realistic language such as Java. Efficiency and precision of such a tool rely partly on low level components which only depend on the syntactic structure of the language and therefore should not be redesigned for each implementation of a new static analysis. This paper describes the Sawja library: a static analysis workshop fully compliant with Java 6 which provides OCaml modules for efficiently manipulating Java bytecode programs. We present the main features of the library, including i) efficient functional data-structures for representing a program with implicit sharing and lazy parsing, ii) an intermediate stack-less representation, and iii) fast computation and manipulation of complete programs. We provide experimental evaluations of the different features with respect to time, memory and precision.
Full Text Available La Ingeniería de Software Basada en Componentes (CBSE pretende mejorar la modularización del software y la inserción de preocupaciones arquitecturales. Refactorizar código Java legado con CBSE en mente requiere evaluar primero el cumplimiento del código legado con los principios de la programación por componentes. En este artículo presentamos un portafolio de reglas para evaluar el cumplimiento de la propiedad de Integridad de Comunicación en código Java legado; esta propiedad es una de las mayores fortalezas del enfoque CBSE. Proponemos estas reglas para identificar tipos componente y así proveer una medida de la construcción de componentes CBSE de una aplicación. Con el objetivo de ayudar a los desarrolladores y al personal responsable del mantenimiento de código legado cuando se hace necesario refactorizar sus aplicaciones, nuestro trabajo nos lleva a definir un conjunto de acciones de refactorización. En este artículo también presentamos resultados de pruebas, comparaciones y análisis de las salidas logradas luego de refactorizar varias aplicaciones Java.
Korten, M.; Becks, B.; Blom, H.; Busch, P.; Kemmerling, G.; Kooijman, W.; Krom, J.G.; Laat, C.T.A.M. de; Lourens, W.; Meer, E. van der; Nideroest, B.; Oomens, A.A.M.; Wijnoltz, F.; Samm, U.
The partners in the Trilateral Euregio Cluster (TEC) are implementing and developing Remote Participation technologies that are expected to support a joint research programme on the experimental facility TEXTOR-94. A common TEC architecture for our heterogeneous data acquisition and storage systems is seen to be one of the major issues. As a consequence, legacy systems will be affected and have to be upgraded for optimised wide area network communication, platform independent data access and display. The object oriented redesign of the system to be described follows theses guidelines. The architecture of the system under development uses Java as programming environment and CORBA as Client/Server communication standard. It is described in this paper, how an operational Data Acquisition CAMAC subsystem of TEXTOR-94 based on OpenVMS and Decnet communications could be redesigned into an open, object oriented architecture in a platform independent way. A suitable Web Browser is required on the client side without further installation of application software to run the server. CORBA static method invocations are used for the communication between the client and server. At the server side, there is only Java code on top of the existing commercial OpenVMS CAMAC device driver. A modular object oriented software design permitted to eliminate dependencies of the generic module levels from the underlying bus systems. Porting of the Java code to other platforms like Windows NT and Linux has proven to be successful
Aslanides, E.; Cachemiche, J. P.; Cogan, J.; Duval, P. Y.; Le Gac, R.; Hachon, F.; Leroy, O.; Liotard, P. L.; Marin, F.; Tsaregorodtsev, A.
The Level-0 muon trigger processor of the LHCb experiment looks for straight particles crossing muon detector and measures their transverse momentum. It processes 40*10 6 proton-proton collisions per second. The tracking uses a road algorithm relying on the projectivity of the muon detector (the logical layout in the 5 muon station is projective in y to the interaction point and it is also projective in x when the bending in the horizontal direction introduced by the magnetic field is ignored). The architecture of the Level-0 muon trigger is complex with a dense network of data interconnections. The design and validation of such an intricate system has only been possible with intense use of software tools for the detector simulation, the modelling of the hardware components behaviour and the validation. A database describing the data-flow is the corner stone between the software and hardware components. (authors)
Pasareanu, Corina; Visser, Willem
Software verification is recognized as an important and difficult problem. We present a norel framework, based on symbolic execution, for the automated verification of software. The framework uses annotations in the form of method specifications an3 loop invariants. We present a novel iterative technique that uses invariant strengthening and approximation for discovering these loop invariants automatically. The technique handles different types of data (e.g. boolean and numeric constraints, dynamically allocated structures and arrays) and it allows for checking universally quantified formulas. Our framework is built on top of the Java PathFinder model checking toolset and it was used for the verification of several non-trivial Java programs.
I. Deloose; J. Cuperus; P. Charrue; F. DiMaio; K. Kostro; M. Vanden Eynden; W. Watson
The PS/SL Convergence Project was launched in March 1998. Its objective is to deliver a common control as infrastructure for the CERN accelerators by year 2001. In the framework of this convergence activity, a project was launched to develop a Java Application Programming Interface (API) between programs written in the Java language and the PS and SL accelerator equipment. This Java API was specified and developed in collaboration with TJNAF. It is based on the Java CDEV  package that has been extended in order to end up with a CERN/TJNAF common product. It implements a detailed model composed of devices organized in named classes that provide a property-based interface. It supports data subscription and introspection facilities. The device model is presented and the capabilities of the API are described with syntax examples. The software architecture is also described
Ram, D; Breitner, T; Szostak, A
The ALICE High-Level Trigger (HLT) has a large high-performance computing cluster at CERN whose main objective is to perform real-time analysis on the data generated by the ALICE experiment and scale it down to at-most 4GB/sec - which is the current maximum mass-storage bandwidth available. Data-flow in this cluster is controlled by a custom designed software framework. It consists of a set of components which can communicate with each other via a common control interface. The software framework also supports the creation of different configurations based on the detectors participating in the HLT. These configurations define a logical data processing “chain” of detector data-analysis components. Data flows through this software chain in a pipelined fashion so that several events can be processed at the same time. An instance of such a chain can run and manage a few thousand physics analysis and data-flow components. The HLT software and the configuration scheme used in the 2011 heavy-ion runs of ALICE, has been discussed in this contribution.
Kirkegaard, Christian; Møller, Anders; Schwartzbach, Michael I.
of XML documents to be defined, there are generally no automatic mechanisms for statically checking that a program transforms from one class to another as intended. We introduce Xact, a high-level approach for Java using XML templates as a first-class data type with operations for manipulating XML values...
Molinaro, Marco; Cepparo, Francesco; De Marco, Marco; Knapic, Cristina; Apollo, Pietro; Smareglia, Riccardo
The International Virtual Observatory Alliance (IVOA) has produced many standards and recommendations whose aim is to generate an architecture that starts from astrophysical resources, in a general sense, and ends up in deployed consumable services (that are themselves astrophysical resources). Focusing on the Data Access Layer (DAL) system architecture, that these standards define, in the last years a web based application has been developed and maintained at INAF-OATs IA2 (Italian National institute for Astrophysics - Astronomical Observatory of Trieste, Italian center of Astronomical Archives) to try to deploy and manage multiple VO (Virtual Observatory) services in a uniform way: VO-Dance. However a set of criticalities have arisen since when the VO-Dance idea has been produced, plus some major changes underwent and are undergoing at the IVOA DAL layer (and related standards): this urged IA2 to identify a new solution for its own service layer. Keeping on the basic ideas from VO-Dance (simple service configuration, service instantiation at call time and modularity) while switching to different software technologies (e.g. dismissing Java Reflection in favour of Enterprise Java Bean, EJB, based solution), the new solution has been sketched out and tested for feasibility. Here we present the results originating from this test study. The main constraints for this new project come from various fields. A better homogenized solution rising from IVOA DAL standards: for example the new DALI (Data Access Layer Interface) specification that acts as a common interface system for previous and oncoming access protocols. The need for a modular system where each component is based upon a single VO specification allowing services to rely on common capabilities instead of homogenizing them inside service components directly. The search for a scalable system that takes advantage from distributed systems. The constraints find answer in the adopted solutions hereafter sketched. The
Tso, Kam S.; Pajevski, Michael J.; Johnson, Bryan
Cyber security has gained national and international attention as a result of near continuous headlines from financial institutions, retail stores, government offices and universities reporting compromised systems and stolen data. Concerns continue to rise as threats of service interruption, and spreading of viruses become ever more prevalent and serious. Controlling access to application layer resources is a critical component in a layered security solution that includes encryption, firewalls, virtual private networks, antivirus, and intrusion detection. In this paper we discuss the development of an application-level access control solution, based on an open-source access manager augmented with custom software components, to provide protection to both Web-based and Java-based client and server applications.
This tutorial will show how Java uses important language constructs, and the set of classes typically used in common tasks. It will briefly show conditional and loops structures and then will introduce the most significative classes included in the java.util package, such as vectors, collections, enumeration, etc. It will finally explain the usage and handling of exceptions in Java.Organiser(s): M.Marquina and R.Ramos /IT-User Support
Full Text Available Resumen: Las facilidades e independencia de plataforma de Java han generado un gran interés en la comunidad de tiempo real. Dicho interés se ha reflejado en la especificación RTSJ (Real-Time Specification for Java, que extiende y adapta el lenguaje Java para permitir el desarrollo de sistemas de tiempo real. Adicionalmente, se han desarrollado perfiles de RTSJ para garantizar la predecibilidad en sistemas de tiempo real críticos. Sin embargo, RTSJ y sus perfiles no proporcionan facilidades para sistemas distribuidos. El objetivo de este trabajo es afrontar dicha limitación definiendo un nuevo modelo de RMI (Remote Method Invocation basado en los principales perfiles de RTSJ para sistemas de tiempo real crítico. Este trabajo presenta el diseño y la implementación de RMI-HRT (RMI-Hard Real-Time que está enfocado a sistemas de tiempo real crítico con requisitos de alta integridad. Abstract: Distributed real-time embedded systems are becoming increasingly important to society. More demands will be made on them and greater reliance will be placed on the delivery of their services. A relevant subset of them is high-integrity or hard real-time systems, where failure can cause loss of life, environmental harm, or significant financial loss.Additionally, the evolution of communication networks and paradigms as well as the necessity of demanding processing power and fault tolerance, motivated the interconnection between electronic devices; many of the communications have the possibility of transferring data at a high speed. The concept of distributed systems emerged as systems where different parts are executed on several nodes that interact with each other via a communication network.Java's popularity, facilities and platform independence have made it an interesting language for the real-time and embedded community. This was the motivation for the development of RTSJ (Real-Time Specification for Java, which is a language extension intended to
Lazaridis, Christos; Bunkowski, Karol; Codispoti, Giuseppe; Dirkx, Glenn; Ghabrous Larrea, Carlos; Lingemann, Joschka; Kreczko, Lukasz; Thea, Alessandro; Williams, Tom
The Large Hadron Collider at CERN restarted in 2015 with a higher centre-of-mass energy of 13 TeV. The instantaneous luminosity is expected to increase significantly in the coming years. An upgraded Level-1 trigger system is being deployed in the CMS experiment in order to maintain the same efficiencies for searches and precision measurements as those achieved in the previous run. This system must be controlled and monitored coherently through software, with high operational efficiency.The legacy system is composed of approximately 4000 data processor boards, of several custom application-specific designs. These boards are organised into several subsystems; each subsystem receives data from different detector systems (calorimeters, barrel/endcap muon detectors), or with differing granularity. These boards have been controlled and monitored by a medium-sized distributed system of over 40 computers and 200 processes. Only a small fraction of the control and monitoring software was common between the different s...
Software development today is embracing functional programming (FP), whether it's for writing concurrent programs or for managing Big Data. Where does that leave Java developers? This concise book offers a pragmatic, approachable introduction to FP for Java developers or anyone who uses an object-oriented language. Dean Wampler, Java expert and author of Programming Scala (O'Reilly), shows you how to apply FP principles such as immutability, avoidance of side-effects, and higher-order functions to your Java code. Each chapter provides exercises to help you practice what you've learned. Once
Full Text Available Although there are a lot of robust and effective scientific libraries in Java, the utilization of these libraries in pure Java is difficult and cumbersome, especially for the average scientist that does not expertise in software development. We illustrate that ScalaLab presents an easier and productive MATLAB like front end. Also, the main strengths and weaknesses of the core Java libraries of ScalaLab are elaborated. Since performance is of paramount importance for scientific computation, the article discusses extensively performance aspects of the ScalaLab environment. Also, Java bytecode performance is compared to native code.
Bøgholm, Thomas; Hansen, Rene Rydhof; Søndergaard, Hans
Java finalizers perform clean-up and finalisation of objects at garbage collection time. In real-time Java profiles the use of finalizers is either discouraged (RTSJ, Ravenscar Java) or even disallowed (JSR-302), mainly because of the unpredictability of finalizers and in particular their impact...... on the schedulability analysis. In this paper we show that a controlled scoped memory model results in a structured and predictable execution of finalizers, more reminiscent of C++ destructors than Java finalizers. Furthermore, we incorporate finalizers into a (conservative) schedulability analysis for Predictable Java...... programs. Finally, we extend the SARTS tool for automated schedulability analysis of Java bytecode programs to handle finalizers in a fully automated way....
The purpose of this study is to consider the content and key points for inclusion in a Java programming course for beginners. The Java programming language has a variety of functions and has the largest application field of all such languages, containing many themes that are appropriate for any such programming course. The multifunctional and wide-ranging functions of Java, however, may actually act as a barrier to study for beginners. The core content of a programming class for beginners sho...
Wiedenmann, W; Baines, J T M; Bee, C P; Biglietti, M; Bogaerts, A; Boisvert, V; Bosman, M; Brandt, S; Caron, B; Casado, M P; Cataldi, G; Cavalli, D; Cervetto, M; Comune, G; Corso-Radu, A; Di Mattia, A; Díaz-Gómez, M; Dos Anjos, A; Drohan, J; Ellis, Nick; Elsing, M; Epp, B; Etienne, F; Falciano, S; Farilla, A; George, S; Ghete, V M; González, S; Grothe, M; Kaczmarska, A; Karr, K M; Khomich, A; Konstantinidis, N P; Krasny, W; Li, W; Lowe, A; Luminari, L; Meessen, C; Mello, A G; Merino, G; Morettini, P; Moyse, E; Nairz, A; Negri, A; Nikitin, N V; Nisati, A; Padilla, C; Parodi, F; Pérez-Réale, V; Pinfold, J L; Pinto, P; Polesello, G; Qian, Z; Resconi, S; Rosati, S; Scannicchio, D A; Schiavi, C; Schörner-Sadenius, T; Segura, E; De Seixas, J M; Shears, T G; Sivoklokov, S Yu; Smizanska, M; Soluk, R A; Stanescu, C; Tapprogge, Stefan; Touchard, F; Vercesi, V; Watson, A T; Wengler, T; Werner, P; Wheeler, S; Wickens, F J; Wielers, M; Zobernig, G; NSS-MIC 2003 - IEEE Nuclear Science Symposium and Medical Imaging Conference, Part 1
The Atlas High Level Trigger's primary function of event selection will be accomplished with a Level-2 trigger farm and an Event Filter farm, both running software components developed in the Atlas offline reconstruction framework. While this approach provides a unified software framework for event selection, it poses strict requirements on offline components critical for the Level-2 trigger. A Level-2 decision in Atlas must typically be accomplished within 10 ms and with multiple event processing in concurrent threads. In order to address these constraints, prototypes have been developed that incorporate elements of the Atlas Data Flow -, High Level Trigger -, and offline framework software. To realize a homogeneous software environment for offline components in the High Level Trigger, the Level-2 Steering Controller was developed. With electron/gamma- and muon-selection slices it has been shown that the required performance can be reached, if the offline components used are carefully designed and optimized ...
Di Guardo, Andrea; Finizio, Antonio
The groundwater VULnerability to PESticide software system (VULPES) is a user-friendly, GIS-based and client-server software developed to identify vulnerable areas to pesticides at regional level making use of pesticide fate models. It is a Decision Support System aimed to assist the public policy makers to investigate areas sensitive to specific substances and to propose limitations of use or mitigation measures. VULPES identify the so-called Uniform Geographical Unit (UGU) which are areas characterised by the same agro-environmental conditions. In each UGU it applies the PELMO model obtaining the 80th percentile of the substance concentration at 1 metre depth; then VULPES creates a vulnerability map in shapefile format which classifies the outputs comparing them with the lower threshold set to the legal limit concentration in groundwater (0.1 μg/l). This paper describes the software structure in details and a case study with the application of the terbuthylazine herbicide on the Lombardy region territory. Three zones with different degrees of vulnerabilities has been identified and described. Copyright © 2015 Elsevier B.V. All rights reserved.
The Large Hadron Collider restarted in 2015 with a higher centre-of-mass energy of 13 TeV. The instantaneous luminosity is expected to increase significantly in the coming years. An upgraded Level-1 trigger system was deployed in the CMS experiment in order to maintain the same efficiencies for searches and precision measurements as those achieved in 2012. This system must be controlled and monitored coherently through software, with high operational efficiency.The legacy system was composed of a large number of custom data processor boards; correspondingly, only a small fraction of the software was common between the different subsystems. The upgraded system is composed of a set of general purpose boards, that follow the MicroTCA specification, and transmit data over optical links, resulting in a more homogeneous system. The associated software is based on generic components corresponding to the firmware blocks that are shared across different cards, regardless of the role that the card plays in the system. ...
This book is full of short, concise recipes to learn a variety of useful web scraping techniques using Java. You will start with a simple basic recipe of setting up your Java environment and gradually learn some more advanced recipes such as using complex Scrapers.Instant Web Scraping with Java is aimed at developers who, while not necessarily familiar with Java, are at least ready to dive into the complexities of this language with simple, step-by-step instructions leading the way. It is assumed that you have at least an intermediate knowledge of HTML, some knowledge of MySQL, and access to a
A Books24x7's TOP 10 title for 4 consecutive years! Java is an easy language to learn. However, you need to master more than the language syntax to be a professional Java programmer. For one, object-oriented programming (OOP) skill is key to developing robust and effective Java applications. In addition, knowing how to use the vast collection of libraries makes development more rapid. This book introduces you to important programming concepts and teaches how to use the Java core libraries. It is a guide to building real-world applications, both desktop and Web-based. The coverage is the
Master Java EE design pattern implementation to improve your design skills and your application's architecture Professional Java EE Design Patterns is the perfect companion for anyone who wants to work more effectively with Java EE, and the only resource that covers both the theory and application of design patterns in solving real-world problems. The authors guide readers through both the fundamental and advanced features of Java EE 7, presenting patterns throughout, and demonstrating how they are used in day-to-day problem solving. As the most popular programming language in community-dri
Sredojević, Dejan; Vidaković, Milan; Okanović, Dušan; Mitrović, Dejan; Ivanović, Mirjana
Georg, Dietmar; Nyholm, Tufve; Olofsson, Joergen; Kjaer-Kristoffersen, Flemming; Schnekenburger, Bruno; Winkler, Peter; Nystroem, Hakan; Ahnesjoe, Anders; Karlsson, Mikael
Purpose: The aim of this study was the clinical evaluation of an independent dose and monitor unit verification (MUV) software which is based on sophisticated semi-analytical modelling. The software was developed within the framework of an ESTRO project. Finally, consistent handling of dose calculation deviations applying individual action levels is discussed. Materials and methods: A Matlab-based software ('MUV') was distributed to five well-established treatment centres in Europe (Vienna, Graz, Basel, Copenhagen, and Umea) and evaluated as a quality assurance (QA) tool in clinical routine. Results were acquired for 226 individual treatment plans including a total of 815 radiation fields. About 150 beam verification measurements were performed for a portion of the individual treatment plans, mainly with time variable fluence patterns. The deviations between dose calculations performed with a treatment planning system (TPS) and the MUV software were scored with respect to treatment area, treatment technique, geometrical depth, radiological depth, etc. Results: In general good agreement was found between calculations performed with the different TPSs and MUV, with a mean deviation per field of 0.2 ± 3.5% (1 SD) and mean deviations of 0.2 ± 2.2% for composite treatment plans. For pelvic treatments less than 10% of all fields showed deviations larger than 3%. In general, when using the radiological depth for verification calculations the results and the spread in the results improved significantly, especially for head-and-neck and for thorax treatments. For IMRT head-and-neck beams, mean deviations between MUV and the local TPS were -1.0 ± 7.3% for dynamic, and -1.3 ± 3.2% for step-and-shoot IMRT delivery. For dynamic IMRT beams in the pelvis good agreement was obtained between MUV and the local TPS (mean: -1.6 ± 1.5%). Treatment site and treatment technique dependent action levels between ±3% and ±5% seem to be clinically realistic if a radiological depth
Phynx: an open source software solution supporting data management and web-based patient-level data review for drug safety studies in the general practice research database and other health care databases.
Egbring, Marco; Kullak-Ublick, Gerd A; Russmann, Stefan
To develop a software solution that supports management and clinical review of patient data from electronic medical records databases or claims databases for pharmacoepidemiological drug safety studies. We used open source software to build a data management system and an internet application with a Flex client on a Java application server with a MySQL database backend. The application is hosted on Amazon Elastic Compute Cloud. This solution named Phynx supports data management, Web-based display of electronic patient information, and interactive review of patient-level information in the individual clinical context. This system was applied to a dataset from the UK General Practice Research Database (GPRD). Our solution can be setup and customized with limited programming resources, and there is almost no extra cost for software. Access times are short, the displayed information is structured in chronological order and visually attractive, and selected information such as drug exposure can be blinded. External experts can review patient profiles and save evaluations and comments via a common Web browser. Phynx provides a flexible and economical solution for patient-level review of electronic medical information from databases considering the individual clinical context. It can therefore make an important contribution to an efficient validation of outcome assessment in drug safety database studies.
Full Text Available In this paper, two of the widely used distributed object system standards which are CORBA and Java RMI has been compared from different perspectives. These perspectives are performance, distributed programming and system level services.
Achenbach, R; Aharrouche, M; Andrei, V; Åsman, B; Barnett, B M; Bauss, B; Bendel, M; Bohm, C; Booth, J R A; Bracinik, J; Brawn, I P; Charlton, D G; Childers, J T; Collins, N J; Curtis, C J; Davis, A O; Eckweiler, S; Eisenhandler, E F; Faulkner, P J W; Fleckner, J; Föhlisch, F; Gee, C N P; Gillman, A R; Goringer, C; Groll, M; Hadley, D R; Hanke, P; Hellman, S; Hidvegi, A; Hillier, S J; Johansen, M; Kluge, E E; Kühl, T; Landon, M; Lendermann, V; Lilley, J N; Mahboubi, K; Mahout, G; Meier, K; Middleton, R P; Moa, T; Morris, J D; Müller, F; Neusiedl, A; Ohm, C; Oltmann, B; Perera, V J O; Prieur, D P F; Qian, W; Rieke, S; Rühr, F; Sankey, D P C; Schäfer, U; Schmitt, K; Schultz-Coulon, H C; Silverstein, S; Sjölin, J; Staley, R J; Stamen, R; Stockton, M C; Tan, C L A; Tapprogge, S; Thomas, J P; Thompson, P D; Watkins, P M; Watson, A; Weber, P; Wessels, M; Wildt, M
The ATLAS first-level calorimeter trigger is a hardware-based system designed to identify high-pT jets, electron/photon and tau candidates and to measure total and missing ET in the ATLAS calorimeters. The complete trigger system consists of over 300 customdesignedVME modules of varying complexity. These modules are based around FPGAs or ASICs with many configurable parameters, both to initialize the system with correct calibrations and timings and to allow flexibility in the trigger algorithms. The control, testing and monitoring of these modules requires a comprehensive, but well-designed and modular, software framework, which we will describe in this paper.
Oliveira Damazio, Denis; The ATLAS collaboration
The ATLAS detector is undergoing intense commissioning effort with cosmic rays preparing for the first LHC collisions next spring. Combined runs with all of the ATLAS subsystems are being taken in order to evaluate the detector performance. This is an unique opportunity also for the trigger system to be studied with different detector operation modes, such as different event rates and detector configuration. The ATLAS trigger starts with a hardware based system which tries to identify detector regions where interesting physics objects may be found (eg: large energy depositions in the calorimeter system). An approved event will be further processed by more complex software algorithms at the second level where detailed features are extracted (full detector granularity data for small portions of the detector is available). Events accepted at this level will be further processed at the so-called event filter level. Full detector data at full granularity is available for offline like processing with complete calib...
Research on real-time Java technology has been prolific over the past decade, leading to a large number of corresponding hardware and software solutions, and frameworks for distributed and embedded real-time Java systems. This book is aimed primarily at researchers in real-time embedded systems, particularly those who wish to understand the current state of the art in using Java in this domain. Much of the work in real-time distributed, embedded and real-time Java has focused on the Real-time Specification for Java (RTSJ) as the underlying base technology, and consequently many of the Chapters in this book address issues with, or solve problems using, this framework. Describes innovative techniques in: scheduling, memory management, quality of service and communication systems supporting real-time Java applications; Includes coverage of multiprocessor embedded systems and parallel programming; Discusses state-of-the-art resource management for embedded systems, including Java’s real-time garbage collect...
Jäger, Marten; Wang, Kai; Bauer, Sebastian; Smedley, Damian; Krawitz, Peter; Robinson, Peter N
Transcript-based annotation and pedigree analysis are two basic steps in the computational analysis of whole-exome sequencing experiments in genetic diagnostics and disease-gene discovery projects. Here, we present Jannovar, a stand-alone Java application as well as a Java library designed to be used in larger software frameworks for exome and genome analysis. Jannovar uses an interval tree to identify all transcripts affected by a given variant, and provides Human Genome Variation Society-compliant annotations both for variants affecting coding sequences and splice junctions as well as untranslated regions and noncoding RNA transcripts. Jannovar can also perform family-based pedigree analysis with Variant Call Format (VCF) files with data from members of a family segregating a Mendelian disorder. Using a desktop computer, Jannovar requires a few seconds to annotate a typical VCF file with exome data. Jannovar is freely available under the BSD2 license. Source code as well as the Java application and library file can be downloaded from http://compbio.charite.de (with tutorial) and https://github.com/charite/jannovar. © 2014 WILEY PERIODICALS, INC.
West African Journal of Industrial and Academic Research ... In addition to the obvious security implications, businesses and the wider software engineering community also risk widespread IP theft - proprietary algorithms, for example, that might be implemented in Java could be easily reverse-engineered and copied.
Barter, R; Vinzant, A.
Systems Engineers are required to deal with complex sets of data. To be useful, the data must be managed effectively, and presented in meaningful terms to a wide variety of information consumers. Two software patterns are presented as the basis for exploring the visualization of systems engineering data. The Model, View, Controller pattern defines an information management system architecture. The Entity, Relation, Attribute pattern defines the information model. MVC Views then form the basis for the user interface between the information consumer and the MVC Controller/Model combination. A Java tool set is described for exploring alternative views into the underlying complex data structures encountered in systems engineering
Full Text Available In this paper realism in computer graphics and components providing realism are discussed at first. It is mentioned about illumination models, surface rendering methods and light sources for this aim. After that, ray tracing which is a technique for creating two dimensional image of a three-dimensional virtual environment is explained briefly. A simple ray tracing algorithm was given. "SahneIzle" which is a ray tracing program implemented in Java programming language which can be used on the internet is introduced. As a result, importance of network-centric ray tracing software is discussed.
Zaenuri; Dwidayati, N.
This research was intended to: (1) explore the forms of ethnomathematics and (2) analyze the integration of ethnomathematic at elementary and intermediate educations. This research used surveys as the main method. The data were collected by means of questionnaires, observations and documentation as well as literature reviews. The data were then analyzed descriptively and qualitatively. The analyses showed the following results: (1) ethnomathematics within the cultures of communities in northern coastal areas of Java Island were in the forms of: (a) cultural buildings (Menara Kudus), (b) non-cultural buildings, traditional foods and (c) batik motifs, and (2) various forms of ethnomathematics in the communities studied relate to the concepts of mathematics that they could be integrated into mathematic learning-teaching activities both in elementary and intermediate levels.
Søndergaard, Hans; Korsholm, Stephan E.; Ravn, Anders Peter
We present an implementation of the Safety-Critical Java profile (SCJ), targeted for low-end embedded platforms with as little as 16 kB RAM and 256 kB flash. The distinctive features of the implementation are a combination of a lean Java virtual machine (HVM), with a bare metal kernel implementing...... hardware objects, first level interrupt handlers, and native variables, and an infrastructure written in Java which is minimized through program specialization. The HVM allows the implementation to be easily ported to embedded platforms which have a C compiler as part of the development environment...
Juneau, Josh; Ng, Victor; Soto, Leo; Wierzbicki, Frank
Jython is an open source implementation of the high-level, dynamic, object-oriented scripting language Python seamlessly integrated with the Java platform. The predecessor to Jython, JPython, is certified as 100% Pure Java. Jython is freely available for both commercial and noncommercial use and is distributed with source code. Jython is complementary to Java. The Definitive Guide to Jython, written by the official Jython team leads, covers the latest Jython 2.5 (or 2.5.x) from the basics to the advanced features. This book begins with a brief introduction to the language and then journeys thr
Hartel, Pieter H.; Domingo-Ferrer, J; Chan, D.; Watson, A.
We review the existing literature on Java safety, emphasizing formal approaches, and the impact of Java safety on small footprint devices such as smart cards. The conclusion is that while a lot of good work has been done, a more concerted effort is needed to build a coherent set of machine readable
Wilde, de Rugayah; Wilde, de W.J.J.O.
As compared with the treatment in the Flora of Java (Backer in Backer & Bakhuizen van den Brink, 1963) with 8 species, a recent review of the genus Trichosanthes in Java resulted in the acceptance of 10 species for this island. Important changes are: the name T. trifolia has to be replaced by a
de Siqueira, Alexandre Fioravante; Cabrera, Flávio Camargo; Nakasuga, Wagner Massayuki; Pagamisse, Aylton; Job, Aldo Eloizo
Image segmentation, the process of separating the elements within a picture, is frequently used for obtaining information from photomicrographs. Segmentation methods should be used with reservations, since incorrect results can mislead when interpreting regions of interest (ROI). This decreases the success rate of extra procedures. Multi-Level Starlet Segmentation (MLSS) and Multi-Level Starlet Optimal Segmentation (MLSOS) were developed to be an alternative for general segmentation tools. These methods gave rise to Jansen-MIDAS, an open-source software. A scientist can use it to obtain several segmentations of hers/his photomicrographs. It is a reliable alternative to process different types of photomicrographs: previous versions of Jansen-MIDAS were used to segment ROI in photomicrographs of two different materials, with an accuracy superior to 89%. © 2017 Wiley Periodicals, Inc.
Full Text Available This paper aims to study the spatial analysis macroeconomics condition in central Java from 1993-2001 base on PDRB analysis. Central Java stands in the last position in the economic in Central Java based on PDRB variable and economic growth is in the lowest category in the comparation with another provinces in Java. This is reason why Central Java is categorized as "LL" (Low low. One of the prime sectors in Central Java is small medium scale enterprises which is dominated 30% of national market, but since the economic crisis stroke in 1997 the manufacture sector, especially industry and processing had collapse. In 1996-1997, the level of manufacture growth increased to 14.4% but then decreased until minus 19.3%. This condition caused by bankruptcy to many of the industries. The poverty profile in Central Java from 1999-2003 is average 23.3% from the total population every years. Central Java stepping to number 2 in level of poverty absolute number 1. In poverty relativity level, Central Java became number 1 in Java from 2002-2003 with the level of poverty reached above the national average. This fact shows the unsuccessfully effort in reducing the poverty level.
Full Text Available Due to the preeminent work of the real-time specification for Java (RTSJ, Java is increasingly expected to become the leading programming language in real-time systems. To provide a Java platform suitable for real-time applications, a Java processor which can execute Java bytecode is directly proposed in this paper. It provides efficient support in hardware for some mechanisms specified in the RTSJ and offers a simpler programming model through ameliorating the scoped memory of the RTSJ. The worst case execution time (WCET of the bytecodes implemented in this processor is predictable by employing the optimization method proposed in our previous work, in which all the processing interfering predictability is handled before bytecode execution. Further advantage of this method is to make the implementation of the processor simpler and suited to a low-cost FPGA chip.
Full Text Available Multiple software programs are available for designing and running large scale system-level pharmacology models used in the drug development process. Depending on the problem, scientists may be forced to use several modeling tools that could increase model development time, IT costs and so on. Therefore it is desirable to have a single platform that allows setting up and running large-scale simulations for the models that have been developed with different modeling tools. We developed a workflow and a software platform in which a model file is compiled into a self-contained executable that is no longer dependent on the software that was used to create the model. At the same time the full model specifics is preserved by presenting all model parameters as input parameters for the executable. This platform was implemented as a model agnostic, therapeutic area agnostic and web-based application with a database back-end that can be used to configure, manage and execute large-scale simulations for multiple models by multiple users. The user interface is designed to be easily configurable to reflect the specifics of the model and the user’s particular needs and the back-end database has been implemented to store and manage all aspects of the systems, such as Models, Virtual Patients, User Interface Settings, and Results. The platform can be adapted and deployed on an existing cluster or cloud computing environment. Its use was demonstrated with a metabolic disease systems pharmacology model that simulates the effects of two antidiabetic drugs, metformin and fasiglifam, in type 2 diabetes mellitus patients.
Conforti, V.; Tosti, G.; Schwarz, J.; Bruno, P.; Cefal‘A, M.; Paola, A. D.; Gianotti, F.; Grillo, A.; Russo, F.; Tanci, C.; Testa, V.; Antonelli, L. A.; Canestrari, R.; Catalano, O.; Fiorini, M.; Gallozzi, S.; Giro, E.; Palombara, N. L.; Leto, G.; Maccarone, M. C.; Pareschi, G.; Stringhetti, L.; Trifoglio, M.; Vercellone, S.; Astri Collaboration; Cta Consortium
ASTRI (Astrofisica con Specchi a Tecnologia Replicante Italiana) is a Flagship Project funded by the Italian Ministry of Education, University and Research, and led by INAF, the Italian National Institute of Astrophysics. Within this framework, INAF is currently developing an end-to-end prototype, named ASTRI SST-2M, of a Small Size Dual-Mirror Telescope for the Cherenkov Telescope Array, CTA. A second goal of the project is the realization of the ASTRI/CTA mini-array, which will be composed of seven SST-2M telescopes placed at the CTA Southern Site. The ASTRI Mini Array Software System (MASS) is designed to support the ASTRI/CTA mini-array operations. MASS is being built on top of the ALMA Common Software (ACS) framework, which provides support for the implementation of distributed data acquisition and control systems, and functionality for log and alarm management, message driven communication and hardware devices management. The first version of the MASS system, which will comply with the CTA requirements and guidelines, will be tested on the ASTRI SST-2M prototype. In this contribution we present the interface definitions of the MASS high level components in charge of the ASTRI SST-2M observation scheduling, telescope control and monitoring, and data taking. Particular emphasis is given to their potential reuse for the ASTRI/CTA mini-array.
Full Text Available Large-scale deployments of mission-critical services have led to stringent demands on Internet routing, but frequently occurring network failures can dramatically degrade the network performance. However, Border Gateway Protocol (BGP can not react quickly to recover from them. Although extensive research has been conducted to deal with the problem, the multiple failure scenarios have never been properly addressed due to the limit of distributed control plane. In this paper, we propose a local fast reroute approach to effectively recover from multiple link failures in one administrative domain. The principle of Software Defined Networking (SDN is used to achieve the software defined AS-level fast rerouting. Considering AS relationships, efficient algorithms are proposed to automatically and dynamically find protection paths for multiple link failures; then OpenFlow forwarding rules are installed on routers to provide data forwarding continuity. Our approach is able to ensure applicability to ASes with flexibility and adaptability to multiple link failures, contributing toward improving the network performance. Through experimental results, we show that our proposal provides effective failure recovery and does not introduce significant control overhead to the network.
O'Mullane, William; Lammers, Uwe; Lindegren, Lennart; Hernandez, Jose; Hobbs, David
This paper provides a description of the Java software framework which has been constructed to run the Astrometric Global Iterative Solution for the Gaia mission. This is the mathematical framework to provide the rigid reference frame for Gaia observations from the Gaia data itself. This process makes Gaia a self calibrated, and input catalogue independent, mission. The framework is highly distributed typically running on a cluster of machines with a database back end. All code is written in the Java language. We describe the overall architecture and some of the details of the implementation.
Oikonomou, Theofanis; Votis, Konstantinos; Korn, Peter; Tzovaras, Dimitrios; Likothanasis, Spriridon
A lot of work has been done lately in an attempt to assess accessibility. For the case of web rich-client applications several tools exist that simulate how a vision impaired or colour-blind person would perceive this content. In this work we propose a simulation tool for non-web JavaTM Swing applications. Developers and designers face a real challenge when creating software that has to cope with a lot of interaction situations, as well as specific directives for ensuring an accessible interaction. The proposed standalone tool will assist them to explore user-centered design and important accessibility issues for their JavaTM Swing implementations.
Hartel, Pieter H.; Moreau, Luc
We review the existing literature on Java safety, emphasizing formal approaches, and the impact of Java safety on small footprint devices such as smart cards. The conclusion is that while a lot of good work has been done, a more concerted effort is needed to build a coherent set of machine readable
Schoeberl, Martin; Rios Rivas, Juan Ricardo
The safety-critical Java (SCJ) specification is developed within the Java Community Process under specification request number JSR 302. The specification is available as public draft, but details are still discussed by the expert group. In this stage of the specification we need prototype...... implementations of SCJ and first test applications that are written with SCJ, even when the specification is not finalized. The feedback from those prototype implementations is needed for final decisions. To help the SCJ expert group, a prototype implementation of SCJ on top of the Java optimized processor...
Gaines, Leonard T; Michael, James B
... to support quality and process control throughout the entire lifecycle of a software-intensive system. This article defines SLAs, discusses software quality and describes how SLAS can be utilized to incorporate requirements pertaining to product, process, project, and deployment quality throughout the software lifecycle.
Marson, Guilherme A.; Torres, Bayardo B.
This work presents a convenient framework for developing interactive chemical education software to facilitate the integration of macroscopic, microscopic, and symbolic dimensions of chemical concepts--specifically, via the development of software for gel permeation chromatography. The instructional role of the software was evaluated in a study…
Is it any better than a textbook and a pad of A4 paper? That's the question we have to ask if we consider investing in a `Revision' CD-ROM. Of course, nothing, in our lifetimes, will quite replace the students' own notes, some paper and a pencil. But, so far as private study is concerned, the computer offers a number of potential advantages: sound, animation, hyperlinks, interactivity, a calculator and a clock. For those with a modem, we can add Internet connections too. A few years ago the only revision materials available for computers were simply electronic versions of textbooks: a few animations and voice commentaries, with maybe a few multiple choice tests was the best you could expect. I was universally disappointed with all such CD-ROMs; they were a waste of money. At last things are changing and theseOxford Personal Revision Guides are definitely software of the new generation: there is commentary, there are animated diagrams (ripple tanks, Hertzsprung-Russell diagrams, falling stones...), there are plenty of hyperlinks to other sections of the CD, and to exam board websites on the Internet, so that students can check their own syllabus.... This CD is not a rip-off! The software uses Microscoft Internet Explorer to produce a screen that looks as if you are connected to the Internet. Few students will have any problems in navigating the system. It is a massive piece of programming requiring a fairly modern PC (Pentium 166, 32 MB RAM, quad-speed CD-ROM drive and a good monitor and sound card really are the minimum; I loaded the programme on an older machine and it struggled!). Installation took a good while because the software insists on installing/updating Internet Explorer to 5.0 and checking for, and loading if necessary, Real Player 7, Microsoft Java Virtual Machine and Macromedia Shockwave 7.0.2 Player. Once all this was loaded it worked extremely well, and at first I kept imagining that I was in fact connected to a fantastic educational site on the web
Ahm, Malte; Thorndahl, Søren; Nielsen, Jesper E; Rasmussen, Michael R
Combined sewer overflow (CSO) structures are constructed to effectively discharge excess water during heavy rainfall, to protect the urban drainage system from hydraulic overload. Consequently, most CSO structures are not constructed according to basic hydraulic principles for ideal measurement weirs. It can, therefore, be a challenge to quantify the discharges from CSOs. Quantification of CSO discharges are important in relation to the increased environmental awareness of the receiving water bodies. Furthermore, CSO discharge quantification is essential for closing the rainfall-runoff mass-balance in combined sewer catchments. A closed mass-balance is an advantage for calibration of all urban drainage models based on mass-balance principles. This study presents three different software sensor concepts based on local water level sensors, which can be used to estimate CSO discharge volumes from hydraulic complex CSO structures. The three concepts were tested and verified under real practical conditions. All three concepts were accurate when compared to electromagnetic flow measurements.
This Software Requirements Specification (SRS) is an as-built document that presents the Tank Waste Remediation System (TWRS) Controlled Baseline Database (TCBD) in its current state. It was originally known as the Performance Measurement Control System (PMCS). Conversion to the new system name has not occurred within the current production system. Therefore, for simplicity, all references to TCBD are equivalent to PMCS references. This SRS will reference the PMCS designator from this point forward to capture the as-built SRS. This SRS is written at a high-level and is intended to provide the design basis for the PMCS. The PMCS was first released as the electronic data repository for cost, schedule, and technical administrative baseline information for the TAAS Program. During its initial development, the PMCS was accepted by the customer, TARS Business Management, with no formal documentation to capture the initial requirements
Yachdav, Guy; Wilzbach, Sebastian; Rauscher, Benedikt; Sheridan, Robert; Sillitoe, Ian; Procter, James; Lewis, Suzanna E; Rost, Burkhard; Goldberg, Tatyana
A reference that answers your questions as you move through your coding The demand for Android programming and web apps continues to grow at an unprecedented pace and Java is the preferred language for both. Java For Dummies Quick Reference keeps you moving through your coding while you solve a problem, look up a command or syntax, or search for a programming tip. Whether you're a Java newbie or a seasoned user, this fast reference offers you quick access to solutions without requiring that you wade through pages of tutorial material. Leverages the true reference format that is organized with
McDowell, Charlie; Villadsen, Jørgen
This book is designed to be used as a quick introduction to C for programmers already familiar with Java. It is not a replacement for a reference book on C but is instead a supplement. For the programmer already familiar with Java, the typical book on C requires the reader to wade through many...... details of already-familiar material. In this book, we quickly present the main concepts needed to begin writing serious programs in C, highlighting the differences between C and Java....
Android development is hot, and many programmers are interested in joining the fun. However, because this technology is based on Java, you should first obtain a solid grasp of the Java language and its foundational APIs to improve your chances of succeeding as an Android app developer. After all, you will be busy learning the architecture of an Android app, the various Android-specific APIs, and Android-specific tools. If you do not already know Java fundamentals, you will probably end up with a massive headache from also having to quickly cram those fundamentals into your knowledge base. Lear
Safety-Critical Java (SCJ) is based on the Real-Time Specification for Java. To simplify the certification of Java programs, SCJ supports only a restricted scoped memory model. Individual threads share only immortal memory and the newly introduced mission memory. All other scoped memories...... implementation is evaluated on an embedded Java processor....
Daly, Charles; Horgan, Jane; Power, James; Waldron, John
In this paper we present a platform independent analysis of the dynamic profiles of Java programs when executing on the Java Virtual Machine. The Java programs selected are taken from the Java Grande Forum benchmark suite, and five different Java-to-bytecode compilers are analysed. The results presented describe the dynamic instruction usage frequencies.
Korsholm, Stephan E.; Schoeberl, Martin; Puffitsch, Wolfgang
For real-time systems the whole execution stack needs to be time-predictable and analyzable for the worst-case execution time (WCET). This paper presents a time-predictable platform for safety-critical Java. The platform consists of (1) the Patmos processor, which is a time-predictable processor......; (2) a C compiler for Patmos with support for WCET analysis; (3) the HVM, which is a Java-to-C compiler; (4) the HVM-SCJ implementation which supports SCJ Level 0, 1, and 2 (for both single and multicore platforms); and (5) a WCET analysis tool. We show that real-time Java programs translated to C...... and compiled to a Patmos binary can be analyzed by the AbsInt aiT WCET analysis tool. To the best of our knowledge the presented system is the second WCET analyzable real-time Java system; and the first one on top of a RISC processor....
Rios Rivas, Juan Ricardo; Schoeberl, Martin
The large collection of Java class libraries is a main factor of the success of Java. However, these libraries assume that a garbage-collected heap is used. Safety-critical Java uses scope-based memory areas instead of a garbage-collected heap. Therefore, the Java class libraries are problematic...... to use in safety-critical Java. We have identified common programming patterns in the Java class libraries that make them unsuitable for safety-critical Java. We propose ways to improve the libraries to avoid the impact of the identified problematic patterns. We illustrate these changes by implementing...
Dylan Gregory Smith
Full Text Available The Java programming language provides a comprehensive set of multithreading programming techniques but currently lacks interprocess communication (IPC facilities, other than slow socket-based communication mechanisms (which are intended primarily for distributed systems, not interprocess communication on a multicore or multiprocessor system. This is problematic due to the ubiquity of modern multicore processors, and the widespread use of Java as a programming language throughout the software development industry. This work aimed to address this problem by utilising Microsoft Windows’ native IPC mechanisms through a framework known as the Java Native Interface. This enabled the use of native C code that invoked the IPC mechanisms provided by Windows, which allowed successful synchronous communication between separate Java processes. The results obtained illustrate the performance dichotomy between socket-based communication and native IPC facilities, with Windows’ facilities providing significantly faster communication. Ultimately, these results show that there are far more effective communication structures available. In addition, this work presents generic considerations that may aid in the eventual design of a generic, platform-independent IPC system for the Java programming language. The fundamental considerations include shared memory with semaphore synchronisation, named pipes and a socket communication model.
D.P. van der Nest; Louis Smidt; Dave Lubbe
This article explores the existing practices of internal audit functions in the locally controlled South African banking industry regarding the use of Generalised Audit Software (GAS), against a benchmark developed from recognised data analytic maturity models, in order to assess the current maturity levels of the locally controlled South African banks in the use of this software for tests of controls. The literature review indicates that the use of GAS by internal audit functions is still at...
Goran P, Šimić
Full Text Available The paper describes the self-directed problem-based learning system (PBL named Java PBL. The expert module is the kernel of Java PBL. It involves a specific domain model, a problem generator and a solution generator. The overall system architecture is represented in the paper. Java PBL can act as the stand-alone system, but it is also designed to provide support to learning management systems (LMSs. This is provided by a modular design of the system. An LMS can offer the declarative knowledge only. Java PBL offers the procedural knowledge and the progress of the learner programming skills. The free navigation, unlimited numbers of problems and recommendations represent the main pedagogical strategies and tactics implemented into the system.
Faghihi, F. [Department of Nuclear Engineering, School of Engineering, Shiraz University, 71348-51153 Shiraz (Iran, Islamic Republic of); Research Center for Radiation Protection, Shiraz University, Shiraz (Iran, Islamic Republic of); Nuclear Safety Research Center, Shiraz University, Shiraz (Iran, Islamic Republic of)], E-mail: email@example.com; Ramezani, E. [Department of Nuclear Engineering, School of Engineering, Shiraz University, 71348-51153 Shiraz (Iran, Islamic Republic of); Yousefpour, F. [Atomic Energy Organization of Iran (AEOI), Tehran (Iran, Islamic Republic of); Mirvakili, S.M. [Department of Nuclear Engineering, School of Engineering, Shiraz University, 71348-51153 Shiraz (Iran, Islamic Republic of)
The main goal of this review paper is to analyze the total frequency of the core damage of the Iranian Heavy Water Research Reactor (IHWRR) compared with standard criteria and to determine the strengths and the weaknesses of the reactor safety systems towards improving its design and operation. The PSA has been considered for full-power state of the reactor and this article represents a level-1 PSA analysis using System Analysis Programs for Hands-On Integrated Reliability Evaluations (SAPHIRE) software. It is specifically designed to permit a listing of the potential accident sequences, compute their frequencies of occurrence and assign each sequence to a consequence. The method used for modeling the systems and accident sequences, is Large Fault Tree/Small Event Tree method. This PSA level-1 for IHWRR indicates that, based on conservative assumptions, the total frequency of accidents that would lead to core damage from internal initiating events is 4.44E-05 per year of reactor operation.
Faghihi, F.; Ramezani, E.; Yousefpour, F.; Mirvakili, S.M.
The main goal of this review paper is to analyze the total frequency of the core damage of the Iranian Heavy Water Research Reactor (IHWRR) compared with standard criteria and to determine the strengths and the weaknesses of the reactor safety systems towards improving its design and operation. The PSA has been considered for full-power state of the reactor and this article represents a level-1 PSA analysis using System Analysis Programs for Hands-On Integrated Reliability Evaluations (SAPHIRE) software. It is specifically designed to permit a listing of the potential accident sequences, compute their frequencies of occurrence and assign each sequence to a consequence. The method used for modeling the systems and accident sequences, is Large Fault Tree/Small Event Tree method. This PSA level-1 for IHWRR indicates that, based on conservative assumptions, the total frequency of accidents that would lead to core damage from internal initiating events is 4.44E-05 per year of reactor operation
Møller, Anders; Schwartzbach, Michael Ignatieff
This slide collection about Java Web service programming, JSP, Servlets and JWIG is created by: Anders Møller and Michael I. Schwartzbach at the BRICS research center at University of Aarhus, Denmark.......This slide collection about Java Web service programming, JSP, Servlets and JWIG is created by: Anders Møller and Michael I. Schwartzbach at the BRICS research center at University of Aarhus, Denmark....
In Indonesia, achievements in food production have helped lower the country's deaths rates and increase life expectancy, making concern about the birthrate all the more critical, particularly in the already crowded Java. Indonesia's rice production in 1985 is expected to reach 26.3 million tons, 58% more than the 1975-79 average. With every country except Malaysia now self-sufficient or surplus in rice, the world market price for rice has dropped markedly. Indonesia's National Logistics Board (BULOG), which aims to establish a floor price for rice, has had to stockpile 3.5 million tons, double its normal reserve and enough for 3 years. Some of it has been kept 2 years already, but it cannot be exported as the quality is low and everybody else also has plenty of rice. Peasants and agriculture experts agree that alternatives to rice pose greater risks in terms of weather and disease. Whatever the government does, rice prices have dropped sharply and are likely to stay down. Fertilizer use can also be expected to decline for the 1st time in years. Indonesia is the scene of a scientific breakthrough, a new hybrid seed corn that grows in the tropics. If seed companies are able to sell seed for half of Indonesia's existing corn acreage, this would be an increase of 1.3 million tons, which would mostly be a surplus to be used for export, processing, or increased human or animal consumption. In revisiting Indonesia, the biggest dissapointment is the failure of family planning to slow the rate of population growth more drastically. 5 years ago, Indonesia's family planning program, started in 1970, appeared a great success. Countrywide, the proportion of women aged 15-44 using contraceptives increased from almost nothing to almost 40% and in Bali topped 60%. Indonesia's overall annual population growth rate had dropped to 1.7%, raising hopes it could be brought down to the 1.2% rate of East Java and Bali by 1985. What has happended instead is that an unexpectedly fast
Full Text Available Low-level bytecode instrumentation techniques are widely used in many software-engineering tools for the Java Virtual Machine (JVM, that perform some form of dynamic program analysis, such as profilers or debuggers. While program manipulation at the bytecode level is very flexible, because the possible bytecode transformations are not restricted, tool development based on this technique is tedious and error-prone. As a promising alternative, the specification of bytecode instrumentation at a higher level using aspect-oriented programming (AOP can reduce tool development time and cost. Unfortunately, prevailing AOP frameworks lack some features that are essential for certain dynamic analyses. In this article, we focus on three common shortcomings in AOP frameworks with respect to the development of aspect-based tools - (1 the lack of mechanisms for passing data between woven advices in local variables, (2 the support for user-defined static analyses at weaving time, and (3 the absence of pointcuts at the level of individual basic blocks of code. We propose @J, an annotation-based AOP language and weaver that integrates support for these three features. The benefits of the proposed features are illustrated with concrete examples.
Long-awaited revision to a unique guide that covers both compilers and interpreters Revised, updated, and now focusing on Java instead of C++, this long-awaited, latest edition of this popular book teaches programmers and software engineering students how to write compilers and interpreters using Java. You?ll write compilers and interpreters as case studies, generating general assembly code for a Java Virtual Machine that takes advantage of the Java Collections Framework to shorten and simplify the code. In addition, coverage includes Java Collections Framework, UML modeling, object-oriented p
D'Avolio, Leonard W; Nguyen, Thien M; Goryachev, Sergey; Fiore, Louis D
Despite at least 40 years of promising empirical performance, very few clinical natural language processing (NLP) or information extraction systems currently contribute to medical science or care. The authors address this gap by reducing the need for custom software and rules development with a graphical user interface-driven, highly generalizable approach to concept-level retrieval. A 'learn by example' approach combines features derived from open-source NLP pipelines with open-source machine learning classifiers to automatically and iteratively evaluate top-performing configurations. The Fourth i2b2/VA Shared Task Challenge's concept extraction task provided the data sets and metrics used to evaluate performance. Top F-measure scores for each of the tasks were medical problems (0.83), treatments (0.82), and tests (0.83). Recall lagged precision in all experiments. Precision was near or above 0.90 in all tasks. Discussion With no customization for the tasks and less than 5 min of end-user time to configure and launch each experiment, the average F-measure was 0.83, one point behind the mean F-measure of the 22 entrants in the competition. Strong precision scores indicate the potential of applying the approach for more specific clinical information extraction tasks. There was not one best configuration, supporting an iterative approach to model creation. Acceptable levels of performance can be achieved using fully automated and generalizable approaches to concept-level information extraction. The described implementation and related documentation is available for download.
Gille, Christoph; Birgit, Weyand; Gille, Andreas
Jones, Jeremy; Hostetter, Carl F.; Wheeler, Philip
The Java Application Shell (JAS) is a software framework that accelerates the development of Java graphical-user-interface (GUI) application programs by enabling the reuse of common, proven GUI elements, as distinguished from writing custom code for GUI elements. JAS is a software infrastructure upon which Java interactive application programs and graphical user interfaces (GUIs) for those programs can be built as sets of plug-ins. JAS provides an application- programming interface that is extensible by application-specific plugins that describe and encapsulate both specifications of a GUI and application-specific functionality tied to the specified GUI elements. The desired GUI elements are specified in Extensible Markup Language (XML) descriptions instead of in compiled code. JAS reads and interprets these descriptions, then creates and configures a corresponding GUI from a standard set of generic, reusable GUI elements. These elements are then attached (again, according to the XML descriptions) to application-specific compiled code and scripts. An application program constructed by use of JAS as its core can be extended by writing new plug-ins and replacing existing plug-ins. Thus, JAS solves many problems that Java programmers generally solve anew for each project, thereby reducing development and testing time.
Zaczek, Mariusz P.
Java Radar Analysis Tool (JRAT) is a computer program for analyzing two-dimensional (2D) scatter plots derived from radar returns showing pieces of the disintegrating Space Shuttle Columbia. JRAT can also be applied to similar plots representing radar returns showing aviation accidents, and to scatter plots in general. The 2D scatter plots include overhead map views and side altitude views. The superposition of points in these views makes searching difficult. JRAT enables three-dimensional (3D) viewing: by use of a mouse and keyboard, the user can rotate to any desired viewing angle. The 3D view can include overlaid trajectories and search footprints to enhance situational awareness in searching for pieces. JRAT also enables playback: time-tagged radar-return data can be displayed in time order and an animated 3D model can be moved through the scene to show the locations of the Columbia (or other vehicle) at the times of the corresponding radar events. The combination of overlays and playback enables the user to correlate a radar return with a position of the vehicle to determine whether the return is valid. JRAT can optionally filter single radar returns, enabling the user to selectively hide or highlight a desired radar return.
The tutorial will firstly give a very first general introduction of what is the JAVA programming language and an overview of what the Java Development environment consists of. It will briefly explain its relation to the Internet, Web browsers and Operating Systems and show how to access Java at CERN. Then, the tutorial will be centred on explaining the basic language constructs to create classes, instances, and implement inheritance, destroy objects, etc. It will show the usage of interfaces. The tutorial is open to everyone. Attendants are required to have a basic intuition on what Object Orientation is, or to have followed the previous tutorial on the Java Serires. Organiser(s): M.Marquina and R.Ramos /IT-User Support
Burckhart-Chromek, Doris; Adragna, P; Alexandrov, L; Amorim, A; Armstrong, S; Badescu, E; Baines, J T M; Barros, N; Beck, H P; Bee, C; Blair, R; Bogaerts, J A C; Bold, T; Bosman, M; Caprini, M; Caramarcu, C; Ciobotaru, M; Comune, G; Corso-Radu, A; Cranfield, R; Crone, G; Dawson, J; Della Pietra, M; Di Mattia, A; Dobinson, Robert W; Dobson, M; Dos Anjos, A; Dotti, A; Drake, G; Ellis, Nick; Ermoline, Y; Ertorer, E; Falciano, S; Ferrari, R; Ferrer, M L; Francis, D; Gadomski, S; Gameiro, S; Garitaonandia, H; Gaudio, G; George, S; Gesualdi-Mello, A; Gorini, B; Green, B; Haas, S; Haberichter, W N; Hadavand, H; Haeberli, C; Haller, J; Hansen, J; Hauser, R; Hillier, S J; Höcker, A; Hughes-Jones, R E; Joos, M; Kazarov, A; Kieft, G; Klous, S; Kohno, T; Kolos, S; Korcyl, K; Kordas, K; Kotov, V; Kugel, A; Landon, M; Lankford, A; Leahu, L; Leahu, M; Lehmann-Miotto, G; Le Vine, M J; Liu, W; Maeno, T; Männer, R; Mapelli, L; Martin, B; Masik, J; McLaren, R; Meessen, C; Meirosu, C; Mineev, M; Misiejuk, A; Morettini, P; Mornacchi, G; Müller, M; Garcia-Murillo, R; Nagasaka, Y; Negri, A; Padilla, C; Pasqualucci, E; Pauly, T; Perera, V; Petersen, J; Pope, B; Albuquerque-Portes, M; Pretzl, K; Prigent, D; Roda, C; Ryabov, Yu; Salvatore, D; Schiavi, C; Schlereth, J L; Scholtes, I; Sole-Segura, E; Seixas, M; Sloper, J; Soloviev, I; Spiwoks, R; Stamen, R; Stancu, S; Strong, S; Sushkov, S; Szymocha, T; Tapprogge, S; Teixeira-Dias, P; Torres, R; Touchard, F; Tremblet, L; Ünel, G; Van Wasen, J; Vandelli, W; Vaz-Gil-Lopes, L; Vermeulen, J C; von der Schmitt, H; Wengler, T; Werner, P; Wheeler, S; Wickens, F; Wiedenmann, W; Wiesmann, M; Wu, X; Yasu, Y; Yu, M; Zema, F; Zobernig, H; Computing In High Energy and Nuclear Physics
The ATLAS Data Acquisition (DAQ) and High Level Trigger (HLT) software system will be comprised initially of 2000 PC nodes which take part in the control, event readout, second level trigger and event filter operations. This high number of PCs will only be purchased before data taking in 2007. The large CERN IT LXBATCH facility provided the opportunity to run in July 2005 online functionality tests over a period of 5 weeks on a stepwise increasing farm size from 100 up to 700 PC dual nodes. The interplay between the control and monitoring software with the event readout, event building and the trigger software has been exercised the first time as an integrated system on this large scale. New was also to run algorithms in the online environment for the trigger selection and in the event filter processing tasks on a larger scale. A mechanism has been developed to package the offline software together with the DAQ/HLT software and to distribute it via peer-to-peer software efficiently to this large pc cluster. T...
Burckhart-Chromek, Doris; Adragna, P; Albuquerque-Portes, M; Alexandrov, L; Amorim, A; Armstrong, S; Badescu, E; Baines, J T M; Barros, N; Beck, H P; Bee, C; Blair, R; Bogaerts, J A C; Bold, T; Bosman, M; Caprini, M; Caramarcu, C; Ciobotaru, M; Comune, G; Corso-Radu, A; Cranfield, R; Crone, G; Dawson, J; Della Pietra, M; Di Mattia, A; Dobinson, Robert W; Dobson, M; Dos Anjos, A; Dotti, A; Drake, G; Ellis, Nick; Ermoline, Y; Ertorer, E; Falciano, S; Ferrari, R; Ferrer, M L; Francis, D; Gadomski, S; Gameiro, S; Garcia-Murillo, R; Garitaonandia, H; Gaudio, G; George, S; Gesualdi-Mello, A; Gorini, B; Green, B; Haas, S; Haberichter, W N; Hadavand, H; Haeberli, C; Haller, J; Hansen, J; Hauser, R; Hillier, S J; Hughes-Jones, R E; Höcker, A; Joos, M; Kazarov, A; Kieft, G; Klous, S; Kohno, T; Kolos, S; Korcyl, K; Kordas, K; Kotov, V; Kugel, A; Landon, M; Lankford, A; Le Vine, M J; Leahu, L; Leahu, M; Lehmann-Miotto, G; Liu, W; Maeno, T; Mapelli, L; Martin, B; Masik, J; McLaren, R; Meessen, C; Meirosu, C; Mineev, M; Misiejuk, A; Morettini, P; Mornacchi, G; Männer, R; Müller, M; Nagasaka, Y; Negri, A; Padilla, C; Pasqualucci, E; Pauly, T; Perera, V; Petersen, J; Pope, B; Pretzl, K; Prigent, D; Roda, C; Ryabov, Yu; Salvatore, D; Schiavi, C; Schlereth, J L; Scholtes, I; Seixas, M; Sloper, J; Sole-Segura, E; Soloviev, I; Spiwoks, R; Stamen, R; Stancu, S; Strong, S; Sushkov, S; Szymocha, T; Tapprogge, S; Teixeira-Dias, P; Torres, R; Touchard, F; Tremblet, L; Van Wasen, J; Vandelli, W; Vaz-Gil-Lopes, L; Vermeulen, J C; Wengler, T; Werner, P; Wheeler, S; Wickens, F; Wiedenmann, W; Wiesmann, M; Wu, X; Yasu, Y; Yu, M; Zema, F; Zobernig, H; von der Schmitt, H; Ünel, G; Computing In High Energy and Nuclear Physics
The ATLAS Data Acquisition (DAQ) and High Level Trigger (HLT) software system will be comprised initially of 2000 PC nodes which take part in the control, event readout, second level trigger and event filter operations. This high number of PCs will only be purchased before data taking in 2007. The large CERN IT LXBATCH facility provided the opportunity to run in July 2005 online functionality tests over a period of 5 weeks on a stepwise increasing farm size from 100 up to 700 PC dual nodes. The interplay between the control and monitoring software with the event readout, event building and the trigger software has been exercised the first time as an integrated system on this large scale. New was also to run algorithms in the online environment for the trigger selection and in the event filter processing tasks on a larger scale. A mechanism has been developed to package the offline software together with the DAQ/HLT software and to distribute it via peer-to-peer software efficiently to this large pc cluster. T...
AUTHOR|(CDS)2160814; Ruse, Laura Cristina; Vasilescu, Laura
CERN manages the largest scientific data archive in the HEP domain. The archive currently holds over 180 Petabytes, with forecasts of up to 100PB of new data added per year. Considering this numbers, the most cost-effective solution for storage in terms of capacity and maintenance is represented by magnetic tapes. The drawback of this solution is the access time which can raise to several minutes for a series of files. In an environment where very large volumes of physics data are being traded from tape to disk and vice versa, this issue becomes a serious performance bottleneck. This thesis introduces two low-level tape access optimizations: first, adding support for the Recommended Access Order (RAO), a mechanism offered by the tape hardware infrastructure to compute the file order corresponding to the minimum access time. We will present our solution for including RAO in the file retrieval operations in CERN tape archive software in order to benefit from the reduced reading time. The second optimization ...
Full Text Available Safety-Critical Java (SCJ is a version of Java whose goal is to support the development of real-time, embedded, safety-critical software. In particular, SCJ supports certification of such software by introducing abstractions that enforce a simpler architecture, and simpler concurrency and memory models. In this paper, we present SCJ-Circus, a refinement-oriented formal notation that supports the specification and verification of low-level programming models that include the new abstractions introduced by SCJ. SCJ-Circus is part of the family of state-rich process algebra Circus, as such, SCJ-Circus includes the Circus constructs for modelling sequential and concurrent behaviour, real-time and object orientation. We present here the syntax and semantics of SCJ-Circus, which is defined by mapping SCJ-Circus constructs to those of standard Circus. This is based on an existing approach for modelling SCJ programs. We also extend an existing Circus-based refinement strategy that targets SCJ programs to account for the generation of SCJ-Circus models close to implementations in SCJ.
Gaines, Leonard T
.... SLAs are typically used in outsourcing contracts for post-production support. We propose that SLAs be used in software acquisition to support quality and process control throughout the lifecycle...
many who believe that the quality of the development process is the best predictor of software product quality. ( Fenton ) Repeatable software processes...reduced errors per KLOC for small projects ( Fenton ), and the quality management metric (QMM) (Machniak, Osmundson). There are also numerous IEEE 14...attention to cosmetic user interface issues and any problems that may arise with the prototype. (Sawyer) The validation process is also another check
Niessner, Albert F.
Two independent coronagraph experiments that require 24/7 availability with different optical layouts and different motion control requirements are commanded and controlled with the same Java software system executing on many geographically scattered computer systems interconnected via TCP/IP. High availability of a distributed system requires that the computers have a robust communication messaging system making the mix of TCP/IP (a robust transport), and XML (a robust message) a natural choice. XML also adds the configuration flexibility. Java then adds object-oriented paradigms, exception handling, heavily tested libraries, and many third party tools for implementation robustness. The result is a software system that provides users 24/7 access to two diverse experiments with XML files defining the differences
Soppera, N.; Henriksson, H.; Nagel, P.; Nouri, A.; Dupont, E.
JANIS (JAva-based Nuclear Information Software) is a display program designed to facilitate the visualisation and manipulation of nuclear data. Its objective is to allow the user of nuclear data to access numerical and graphical representations without prior knowledge of the storage format. It offers maximum flexibility for the comparison of different nuclear data sets. Features included in the latest release are described such as direct access to centralised databases through JAVA Servlet technology
Billingsley, B. W.; Brodzik, M.; Collins, J. A.
NSIDC has created a new data discovery and access system, Searchlight, to provide users with the data they want in the format they want. NSIDC Searchlight supports discovery and access to disparate data types with on-the-fly reprojection, regridding and reformatting. Architected to both reuse open source systems and be reused itself, Searchlight reuses GDAL and Proj4 for manipulating data and format conversions, the netCDF Java library for creating netCDF output, MapServer and OpenLayers for defining spatial criteria and the JTS Topology Suite (JTS) in conjunction with Hibernate Spatial for database interaction and rich OGC-compliant spatial objects. The application reuses popular Java and Java Script libraries including Struts 2, Spring, JPA (Hibernate), Sitemesh, JFreeChart, JQuery, DOJO and a PostGIS PostgreSQL database. Future reuse of Searchlight components is supported at varying architecture levels, ranging from the database and model components to web services. We present the tools, libraries and programs that Searchlight has reused. We describe the architecture of Searchlight and explain the strategies deployed for reusing existing software and how Searchlight is built for reuse. We will discuss NSIDC reuse of the Searchlight components to support rapid development of new data delivery systems.
Kostka, M.; Koning, N.; Shand, Z.; Ouyed, R.; Jaikumar, P.
Aims: We present r-Java 2.0, a nucleosynthesis code for open use that performs r-process calculations, along with a suite of other analysis tools. Methods: Equipped with a straightforward graphical user interface, r-Java 2.0 is capable of simulating nuclear statistical equilibrium (NSE), calculating r-process abundances for a wide range of input parameters and astrophysical environments, computing the mass fragmentation from neutron-induced fission and studying individual nucleosynthesis processes. Results: In this paper we discuss enhancements to this version of r-Java, especially the ability to solve the full reaction network. The sophisticated fission methodology incorporated in r-Java 2.0 that includes three fission channels (beta-delayed, neutron-induced, and spontaneous fission), along with computation of the mass fragmentation, is compared to the upper limit on mass fission approximation. The effects of including beta-delayed neutron emission on r-process yield is studied. The role of Coulomb interactions in NSE abundances is shown to be significant, supporting previous findings. A comparative analysis was undertaken during the development of r-Java 2.0 whereby we reproduced the results found in the literature from three other r-process codes. This code is capable of simulating the physical environment of the high-entropy wind around a proto-neutron star, the ejecta from a neutron star merger, or the relativistic ejecta from a quark nova. Likewise the users of r-Java 2.0 are given the freedom to define a custom environment. This software provides a platform for comparing proposed r-process sites.
O'Mullane, William; Lammers, Uwe; Lindegren, Lennart; Hernandez, Jose; Hobbs, David
This paper provides a description of the Java software framework which has been constructed to run the Astrometric Global Iterative Solution for the Gaia mission. This is the mathematical framework to provide the rigid reference frame for Gaia observations from the Gaia data itself. This process makes Gaia a self calibrated, and input catalogue independent, mission. The framework is highly distributed typically running on a cluster of machines with a database back end. All code is written in ...
Vladimir Getov; Paul Gray; Sava Mintchev; Vaidy Sunderam
Recent developments in processor capabilities, software tools, programming languages and programming paradigms have brought about new approaches to high performance computing. A steadfast component of this dynamic evolution has been the scientific community’s reliance on established scientific packages. As a consequence, programmers of high‐performance applications are reluctant to embrace evolving languages such as Java. This paper describes the Java‐to‐C Interface (JCI) tool which provides ...
Full Text Available The purposes of this research are to prevent jockey in exams, reduce the occurrence of error in attendance record at practicum or exams, and reduce error in filling students' attendance status to the attendance system. Three main parts of software development method are used; analysis, design, and literature method. Current system survey, analysis of the survey findings, identify the information, and identifying system requirements are implemented in analysis method. The design method that is used in this research is Unified Modeling Language (UML. The using of attendance recording system that uses Java Card-based application makes students identity card has a new function as the tool to make attendance. Conclusion of the research has shown that it can prevent identity fraud, minimize the time wasted in attendance system, reduce the printing paper, and reduce tagging errors eligibility status exam of students.
Carvajal Riola, José Carlos
The aim of this document is to study the Java EE technologies and the different kind of software projects that you can develop with, later we start an historical review of methodologies and make a justified selection of 6 agile methodologies, to compare and analysis. Another objective of this document is to identify the main tools needed to develop software and specially, with agile methodologies and Java EE technologies. The last objective of the document is to show us a practice case, where...
Aso, T.; Okazawa, H.; Takashimizu, N.
The authors present the current status of the project for developing the numerical library in JAVA. The authors have presented how object-oriented techniques improve usage and also development of numerical libraries compared with the conventional way at previous conference. The authors need many functions for data analysis which is not provided within JAVA language, for example, good random number generators, special functions and so on. Authors' development strategy is focused on easiness of implementation and adding new features by users themselves not only by developers. In HPC field, there are other focus efforts to develop numerical libraries in JAVA. However, their focus is on the performance of execution, not easiness of extension. Following the strategy, the authors have designed and implemented more classes for random number generators and so on
Reese, Richard M
Each recipe comprises step-by-step instructions followed by an analysis of what was done in each task and other useful information. The book is designed so that you can read it chapter by chapter, or look at the list of recipes and refer to them in no particular order. Each example comes with its expected output to make your learning even easier. This book is designed to bring those who are familiar with Java up-to-speed on the new features found in Java 7.
"This important resource offers a detailed description about the practical considerations and applications in database programming using Java NetBeans 6.8 with authentic examples and detailed explanations. This book provides readers with a clear picture as to how to handle the database programming issues in the Java NetBeans environment. The book is ideal for classroom and professional training material. It includes a wealth of supplemental material that is available for download including Powerpoint slides, solution manuals, and sample databases"--
We summarize the current status and future developments of the North American Group's Java-based system for studying physics and detector design issues at a linear collider. The system is built around Java Analysis Studio (JAS) an experiment-independent Java-based utility for data analysis. Although the system is an integrated package running in JAS, many parts of it are also standalone Java utilities
Rebwar Mala Nabi; Sardasht M-Raouf Mahmood; Mohammed Qadir Kheder; Shadman Mahmood
Nowadays, Kurdish programmers usually suffer when they need to write Kurdish letter while they program in java. More to say, all the versions of Java Development Kits have not supported Kurdish letters. Therefore, the aim of this study is to develop Java Kurdish Language Package (JKLP) for solving writing Kurdish alphabetic in Java programming language. So that Kurdish programmer and/or students they can converts the English-alphabetic to Kurdish-alphabetic. Furthermore, adding Kurdish langua...
Bower, Gary; Cassell, Ron; Graf, Norman; Johnson, Tony; Ronan, Mike
We summarize the current status and future developments of the North American Group's Java-based system for studying physics and detector design issues at a linear collider. The system is built around Java Analysis Studio (JAS) an experiment-independent Java-based utility for data analysis. Although the system is an integrated package running in JAS, many parts of it are also standalone Java utilities
Liang, Chong R; Chen, Priscilla X H; Kapur, Jeevesh; Ong, Michael K L; Quek, Swee T; Kapur, Subhash C
The aim of this study was to establish institutional diagnostic reference levels (DRLs) by summarising doses collected across the five computed tomography (CT) system in our institution. CT dose data of 15940 patients were collected retrospectively from May 2015 to October 2015 in five institutional scanners. The mean, 75th percentile and 90th percentile of the dose spread were calculated according to anatomic region. The common CT examinations such as head, chest, combined abdomen/pelvis (A/P), and combined chest/abdomen/pelvis (C/A/P) were reviewed. Distribution of CT dose index (CTDIvol), dose-length product (DLP) and effective dose (ED) were extracted from the data for single-phasic and multiphasic examinations. The institutional DRL for our CT units were established as mean (50th percentile) of CTDIvol (mGy), DLP (mGy.cm) and ED (mSv) for single and multiphasic studies using the dose-tracking software. In single phasic examination, Head: (49.0 mGy), (978.0 mGy.cm), (2.4 mSv) respectively; Chest: (6.0 mGy), (254.0 mGy.cm), (4.9 mSv) respectively; CT A/P (10.0 mGy), (514.0 mGy.cm), (8.9 mSv) respectively; CT C/A/P (10.0 mGy), (674.0 mGy.cm), (11.8 mSv) respectively. In multiphasic studies: Head (45.0 mGy), (1822.0 mGy.cm), (5.0 mSv) respectively; Chest (8.0 mGy), (577.0 mGy.cm), (10.0 mSv) respectively; CT A/P: (10.0 mGy), (1153.0 mGy.cm), (20.2 mSv) respectively; CT C/A/P: (11.0 mGy), (1090.0 mGy.cm), (19.2 mSv) respectively. The reported metrics offer a variety of information that institutions can use for quality improvement activities. The variations in dose between scanners suggest a large potential for optimisation of radiation dose. © 2017 The Authors. Journal of Medical Radiation Sciences published by John Wiley & Sons Australia, Ltd on behalf of Australian Society of Medical Imaging and Radiation Therapy and New Zealand Institute of Medical Radiation Technology.
Bunn, Phyllis C.; Barfit, Laurie A.; Cooper, Jan
The purpose of this paper was to determine what communication skills are considered most important by employers in the accounting profession as well as to determine the general office, income tax, and bookkeeping software packages used by CPA firms in Mississippi. The data was collected by means of an electronic five-point Likert-type survey…
Messersmith, Stephania J.
An upper-division undergraduate chemistry experiment is described which utilizes DigiSim software to simulate cyclic voltammetry (CV). Four mechanisms were studied: a reversible electron transfer with no subsequent or proceeding chemical reactions, a reversible electron transfer followed by a reversible chemical reaction, a reversible chemical…
Dr. Leo Pruijt; Christian Köppe
Author supplied: DOI : http://dx.doi.org/10.1145/2691352.2691357 Assignments and exercises are an essential part of software engineering education. It usually requires a variety of these assignments to cover a desired wide range of educational objectives as defined in the revised Bloom's taxonomy.
V.N. Serbanescu (Vlad); C. Nagarajagowda (Chetan); K. Azadbakht (Keyvan); F.S. de Boer (Frank); B. Nobakht (Behrooz); F. Pop; M. Potop-Butucaru
htmlabstractIn this paper we present an API to support modeling applications with Actors based on the paradigm of the Abstract Behavioural Specification (ABS) language. With the introduction of JAVA 8, we expose this API through a JAVA library to allow for a high-level actor-based methodology for
Rensink, Arend; Zambon, Eduardo
In this report we present a type graph that models all executable constructs of the Java programming language. Such a model is useful for any graph-based technique that relies on a representation of Java programs as graphs. The model can be regarded as a common representation to which all Java
Adams, Chad R
Updated for the 1.5 edition of the Java 2 Platform, this third edition is a one-stop resource for serious Java developers. It shows the parts of Java Swing API used to create graphical user interfaces (GUI); and Model-View-Controller architecture that lies behind all Swing components; and customizing components for specific environments.
Debbabi, Mourad; Talhi, Chamseddine
Java brings more functionality and versatility to the world of mobile devices, but it also introduces new security threats. This book contains a presentation of embedded Java security and presents the main components of embedded Java. It gives an idea of the platform architecture and is useful for researchers and practitioners.
Rensink, Arend; Zambon, Eduardo; Lee, D.; Lopes, A.; Poetzsch-Heffter, A.
In this work we present a type graph that models all executable constructs of the Java programming language. Such a model is useful for any graph-based technique that relies on a representation of Java programs as graphs. The model can be regarded as a common representation to which all Java syntax
“It is not necessary to change. Survival is not mandatory.” -W. Edwards Deming Work takes time to flow through an organization and ultimately be deployed to production where it captures value. It’s critical to reduce time-to-production. Software – for many organizations and industries – is a competitive advantage. Organizations break their larger software ambitions into smaller, independently deployable, feature -centric batches of work – microservices. In order to reduce the round-trip between stations of work, organizations collapse or consolidate as much of them as possible and automate the rest; developers and operations beget “devops,” cloud-based services and platforms (like Cloud Foundry) automate operations work and break down the need for ITIL tickets and change management boards. But velocity, for velocity’s sake, is dangerous. Microservices invite architectural complexity that few are prepared to address. In this talk, we’ll look at how high performance organizations like Tic...
Jensen, Martin Lykke Rytter; Jørgensen, Bo Nørregaard
of dimensions of extension that can be exploited without performing modification of existing types. Thus, dynamic links make it possible to enforce the open/closed principle in situations where it would otherwise not be possible. We present Decouplink – a library-based implementation of dynamic links for Java...
Biboudis, A. (Aggelos); P.A. Inostroza Valdera (Pablo); T. van der Storm (Tijs)
textabstractMainstream programming languages like Java have limited support for language extensibility. Without mechanisms for syntactic abstraction, new programming styles can only be embedded in the form of libraries, limiting expressiveness. In this paper, we present Recaf, a lightweight tool for
Steenis, van C.G.G.J.
Towards the end of February 1936 we received living specimens of this species, which is hitherto known only from Japan, China, the Indochinese Peninsula und Himalaya, collected in West Java, Preanger Residency, by Mr H. W. Kluit, employé of the plantation Ardjoena, section Karang-Toemaritis. The
Full Text Available This paper presents the process of measuring the level of quality control process to ensure the quality of delivered software package during the development cycle. The success of the project requires three pre-requisites and they constrain one another. Quality is the most important factor for successful project completion. In other words, quality should not be sacrificed for the sake of meeting cost budget or delivering within schedule. Also, cost caused by any quality issues such as defect resolution increases exponentially once the product is out of the door. Having said that, we also have to consider the schedule side of constraints for the successful project. In other words, we have no time to do a quality job and we have to compete with other competitors to ship the product to the market earlier than them. So, the quality measurement and management concept is introduced to meet the agile software development environment in conjunction with performance strategies to execute within organization. Obviously, there are many key performance indexes derivable from the actual data associated with quality control activities and it is desirable to create a quality process to integrally represent overall level of quality control activities performed while developing the software deliverables. With the quality process, it is possible to evaluate whether enough quality control activities are performed for the project officially and secure the quality of the software deliverables before it is delivered to the customers.
Full Text Available Indonesia is one of the highest greenhouse emitters in the world. As a response of this problem, Indonesia declared the national action plan to focus on national greenhouse gas (GHG reduction by 26 % by 2020. To achieve this target, Government puts energy sector as one of the top priorities since it is the second strongest contributor to national GHG emissions. The main purpose of this paper is to apply the method of fugitive emissions calculation to the existing natural gas pipeline in Indonesia. Fugitive emissions are the major component of GHG emissions from natural gas systems and methane (CH4, the primary component of natural gas pipeline, is a potent GHG. Tiered approaches from Interstate Natural Gas Association of America (INGAA are implemented in this paper as the estimation guidelines. A case study of a natural gas pipeline system in Indonesia is analyzed to compare the GHG emissions level resulted from Tier 1 and Tier 2 methods. In these methods, the input data are pipeline length, the number of compressor stations, and the number of meter and pressure regulation stations. In this case, the GHG emissions level of Tier 2 is significantly different from Tier 1. The variation of pipeline length shows that for the length under 479.2 miles, Tier 1 gives lower amount of CO2 equivalent than Tier 2. The differences of these estimation methods and results can be furtherly developed to provide relevant information and recommendation for the Companies and Government to record the emissions level from natural gas transmission pipeline according to their needs and purposes.
Gatot Suhariyono; Buchori; Dadong Iskandar
The dose rate Monitoring of environmental gamma radiation at some locations in Java Island in the year 2005 / 2006 has been carried out. The dose rate measurement of gamma radiation is carried out by using the peripheral of Portable Gamma of Ray Spectrometer with detector of NaI(Tl), Merck Exploranium, Model GR-130- MINISPEC, while to determine its geographic position is used by the GPS (Global Positioning System), made in German corporation of GPS III Plus type. The division of measurement region was conducted by dividing Java Island become 66 parts with same distance, except in Jepara area that will built PLTN (Nuclear Energy Power), distance between measurement points is more closed. The results of dose rate measurement are in 66 locations in Java Island the range of (19.24 ± 4.05) nSv/hour until (150.78 ± 12.26) nSv/hour with mean (51.93 ± 36.53) nSv/h. The lowest dose rate was in location of Garut, while highest dose rate was in Ujung Lemah Abang, Jepara location. The data can be used for base line data of dose rate of environmental gamma radiation in Indonesia, specially in Java Island. The mean level of gamma radiation in Java monitoring area (0.46 mSv / year) was still lower than worldwide average effective dose rate of terrestrial gamma rays 0.5 mSv / year (report of UNSCEAR, 2000). (author)
Schoeberl, Martin; Dalsgaard, Andreas Engelbredt; Hansen, René Rydhof
This paper presents the motivation for and outcomes of an engineering research project on certifiable Javafor embedded systems. The project supports the upcoming standard for safety-critical Java, which defines asubset of Java and libraries aiming for development of high criticality systems....... The outcome of this projectinclude prototype safety-critical Java implementations, a time-predictable Java processor, analysis tools formemory safety, and example applications to explore the usability of safety-critical Java for this applicationarea. The text summarizes developments and key contributions...
Cameron, Nicholas R.; Drossopoulou, Sophia; Ernst, Erik
Wildcards are a complex and subtle part of the Java type system, present since version 5.0. Although there have been various formalisations and partial type soundness results concerning wildcards, to the best of our knowledge, no system that includes all the key aspects of Java wildcards has been...... proven type sound. This paper establishes that Java wildcards are type sound. We describe a new formal model based on explicit existential types whose pack and unpack operations are handled implicitly, and prove it type sound. Moreover, we specify a translation from a subset of Java to our formal model......, and discuss how several interesting aspects of the Java type system are handled....
A practical introduction to programming with Java Beginning Programming with Java For Dummies, 4th Edition is a comprehensive guide to learning one of the most popular programming languages worldwide. This book covers basic development concepts and techniques through a Java lens. You'll learn what goes into a program, how to put the pieces together, how to deal with challenges, and how to make it work. The new Fourth Edition has been updated to align with Java 8, and includes new options for the latest tools and techniques. Java is the predominant language used to program Android and cloud app
One of the most popular beginning programming books, now fully updated Java is a popular language for beginning programmers, and earlier editions of this fun and friendly guide have helped thousands get started. Now fully revised to cover recent updates for Java 7.0, Beginning Programming with Java For Dummies, 3rd Edition is certain to put more first-time programmers and Java beginners on the road to Java mastery.Explores what goes into creating a program, putting the pieces together, dealing with standard programming challenges, debugging, and making the program work Offers new options for
Hahn, Brian D; Malan, Katherine M
Essential Java serves as an introduction to the programming language, Java, for scientists and engineers, and can also be used by experienced programmers wishing to learn Java as an additional language. The book focuses on how Java, and object-oriented programming, can be used to solve science and engineering problems. Many examples are included from a number of different scientific and engineering areas, as well as from business and everyday life. Pre-written packages of code are provided to help in such areas as input/output, matrix manipulation and scientific graphing. Java source code and
Zakas, Nicholas C
Sekiyama, Makiko; Jiang, Hong Wei; Gunawan, Budhi; Dewanti, Linda; Honda, Ryo; Shimizu-Furusawa, Hana; Abdoellah, Oekan S; Watanabe, Chiho
Indonesia is facing household-level double burden malnutrition. This study aimed at examining (1) household-level double burden for the mother-child and father-child pairs; (2) risk of adiposity of double burden households; and (3) associated dietary factors. Subjects were 5th and 6th grade elementary school children (n = 242), their mothers (n = 242), and their fathers (n = 225) in five communities (1 = urban, 4 = rural) in the Bandung District. Questionnaires on socioeconomic factors, blood hemoglobin measurements, and anthropometric measurements were administered. For adults, body fat percentage (BF%) was estimated by bioelectrical impedance (BF%-BI) and by converting skinfold thickness (ST) data using Durnin and Womersley's (1974) formula (BF%-ST). Food frequency questionnaires were also completed. Double burden was defined as coexistence of maternal or paternal overweight (Body mass index (BMI) ≥ 23) and child stunting (height-for-age z-score child double burden occurred in 30.6% of total households, whereas paternal-child double burden was only in 8.4%. Mothers from double burden households showed high adiposity; 87.3% with BF%-BI and 66.2% with BF%-ST had BF% >35%, and 60.6% had waists >80 cm. The major dietary patterns identified were "Modern" and "High-animal products". After controlling for confounding factors, children in the highest quartile of the "High-animal products" dietary pattern had a lower risk of maternal-child double burden (Adjusted OR: 0.46, 95% CI: 0.21-1.04) than those in the lowest quartile. Given that the "High-animal products" dietary pattern was associated with the decreased risk of maternal-child double burden through a strong negative correlation with child stunting, improving child stunting through adequate intake of animal products is critical to solve the problem of maternal-child double burden in Indonesia.
Full Text Available Indonesia is facing household-level double burden malnutrition. This study aimed at examining (1 household-level double burden for the mother-child and father-child pairs; (2 risk of adiposity of double burden households; and (3 associated dietary factors. Subjects were 5th and 6th grade elementary school children (n = 242, their mothers (n = 242, and their fathers (n = 225 in five communities (1 = urban, 4 = rural in the Bandung District. Questionnaires on socioeconomic factors, blood hemoglobin measurements, and anthropometric measurements were administered. For adults, body fat percentage (BF% was estimated by bioelectrical impedance (BF%-BI and by converting skinfold thickness (ST data using Durnin and Womersley’s (1974 formula (BF%-ST. Food frequency questionnaires were also completed. Double burden was defined as coexistence of maternal or paternal overweight (Body mass index (BMI ≥ 23 and child stunting (height-for-age z-score <−2 within households. Maternal-child double burden occurred in 30.6% of total households, whereas paternal-child double burden was only in 8.4%. Mothers from double burden households showed high adiposity; 87.3% with BF%-BI and 66.2% with BF%-ST had BF% >35%, and 60.6% had waists >80 cm. The major dietary patterns identified were “Modern” and “High-animal products”. After controlling for confounding factors, children in the highest quartile of the “High-animal products” dietary pattern had a lower risk of maternal-child double burden (Adjusted OR: 0.46, 95% CI: 0.21–1.04 than those in the lowest quartile. Given that the “High-animal products” dietary pattern was associated with the decreased risk of maternal-child double burden through a strong negative correlation with child stunting, improving child stunting through adequate intake of animal products is critical to solve the problem of maternal-child double burden in Indonesia.
DePasquale, Peter; Lewis, John; Stein, Matthew R.
Many current web-based telerobotic interfaces use HyperText Markup Language (HTML) forms to assert user control on a robot. While acceptable for some tasks, a Java interface can provide better client-server interaction. The Puma Paint project is a joint effort between the Department of Computing Sciences at Villanova University and the Department of Mechanical and Materials Engineering at Wilkes University. THe project utilizes a Java applet to control a Unimation Puma 1760 robot during the task of painting on a canvas. The interface allows the user to control the paint strokes as well as the pressure of a brush on the canvas and how deep the brush is dipped into a paint jar. To provide immediate feedback, a virtual canvas models the effects of the controls as the artist paints. Live color video feedback is provided, allowing the user to view the actual results of the robot's motions. Unlike the step-at-a-time model of many web forms, the application permits the user to assert interactive control. The greater the complexity of the interaction between the robot and its environment, the greater the need for high quality information presentation to the user. The use of Java allows the sophistication of the user interface to be raised to the level required for satisfactory control. This paper describes the Puma Paint project, including the interface and communications model. It also examines the challenges of using the Internet as the medium of communications and the challenges of encoding free ranging motions for transmission from the client to the robot.
Lee , Jae-Gon; Chung , Moo-Kyoung; Ahn , Ki-Yong; Lee , Sang-Heon; Kyung , Chong-Min
Submitted on behalf of EDAA (http://www.edaa.com/); International audience; This paper presents a scheme for efficient channel usage between simulator and accelerator where the accelerator models some RTL sub-blocks in the accelerator-based hardware/software co-simulation while the simulator runs transaction-level model of the remaining part of the whole chip being verified. With conventional simulation accelerator, evaluations of simulator and accelerator alternate at every valid simulation ...
La representación mediante espacios de estados es un elemento central en los cursos sobre inteligencia artificial simbólica. Las prácticas de programación resultan muy importantes para la asimilación de este concepto. En este trabajo presentamos un software orientado a objetos en Java diseñado para facilitar la asimilación del concepto de espacio de estados y lo comparamos con las clases proporcionadas para la misma tarea en el software aima-java. A continuación se res...
Martin, Andrew C R
Sahin, D.; Uenlue, K.
In order to envision the radiation exposure during Neutron Activation Analysis (NAA) experiments, a software called Activity Predictor is developed using Java TM programming language. The Activity Predictor calculates activities, exposure rates and gamma spectra of activated samples for NAA experiments performed at Radiation Science and Engineering Center (RSEC), Penn State Breazeale Reactor (PSBR). The calculation procedure for predictions involves both analytical and Monte Carlo methods. The Activity Predictor software is validated with a series of activation experiments. It has been found that Activity Predictor software calculates the activities and exposure rates precisely. The software also predicts gamma spectrum for each measurement. The predicted spectra agreed partially with measured spectra. The error in net photo peak areas varied from 4.8 to 51.29%, which is considered to be due to simplistic modeling, statistical fluctuations and unknown contaminants in the samples. (author)
De Beer, R.; Van Ormondt, D.
We have developed a Java/Fortran based application, called MonteCarlo, that enables the users can carry out Monte Carlo studies in the field of in vivo MRS. The application is supposed to be used as a tool for the jMRUI platform, being the in vivo MRS software system of the TRANSACT European Union
Bellenot, Bertrand; Linev, Sergey
Bellenot, Bertrand; Linev, Sergey
Victorine, J.; Watney, W.L.; Bhattacharya, S.
The GEMINI (Geo-Engineering Modeling through INternet Informatics) is a public-domain, web-based freeware that is made up of an integrated suite of 14 Java-based software tools to accomplish on-line, real-time geologic and engineering reservoir modeling. GEMINI facilitates distant collaborations for small company and academic clients, negotiating analyses of both single and multiple wells. The system operates on a single server and an enterprise database. External data sets must be uploaded into this database. Feedback from GEMINI users provided the impetus to develop Stand Alone Web Start Applications of GEMINI modules that reside in and operate from the user's PC. In this version, the GEMINI modules run as applets, which may reside in local user PCs, on the server, or Java Web Start. In this enhanced version, XML-based data handling procedures are used to access data from remote and local databases and save results for later access and analyses. The XML data handling process also integrates different stand-alone GEMINI modules enabling the user(s) to access multiple databases. It provides flexibility to the user to customize analytical approach, database location, and level of collaboration. An example integrated field-study using GEMINI modules and Stand Alone Web Start Applications is provided to demonstrate the versatile applicability of this freeware for cost-effective reservoir modeling. ?? 2005 Elsevier Ltd. All rights reserved.
Horlacher, Oliver; Nikitin, Frederic; Alocci, Davide; Mariethoz, Julien; Müller, Markus; Lisacek, Frederique
Mass spectrometry (MS) is a widely used and evolving technique for the high-throughput identification of molecules in biological samples. The need for sharing and reuse of code among bioinformaticians working with MS data prompted the design and implementation of MzJava, an open-source Java Application Programming Interface (API) for MS related data processing. MzJava provides data structures and algorithms for representing and processing mass spectra and their associated biological molecules, such as metabolites, glycans and peptides. MzJava includes functionality to perform mass calculation, peak processing (e.g. centroiding, filtering, transforming), spectrum alignment and clustering, protein digestion, fragmentation of peptides and glycans as well as scoring functions for spectrum-spectrum and peptide/glycan-spectrum matches. For data import and export MzJava implements readers and writers for commonly used data formats. For many classes support for the Hadoop MapReduce (hadoop.apache.org) and Apache Spark (spark.apache.org) frameworks for cluster computing was implemented. The library has been developed applying best practices of software engineering. To ensure that MzJava contains code that is correct and easy to use the library's API was carefully designed and thoroughly tested. MzJava is an open-source project distributed under the AGPL v3.0 licence. MzJava requires Java 1.7 or higher. Binaries, source code and documentation can be downloaded from http://mzjava.expasy.org and https://bitbucket.org/sib-pig/mzjava. This article is part of a Special Issue entitled: Computational Proteomics. Copyright © 2015 Elsevier B.V. All rights reserved.
Martínez de Morentin Iribarren, Xabier
Este proyecto trata de informar y dar una base sobre Java, así como los programas a los cuales se les da uso, para facilitar la programación en el mundo laboral, ya sean programas de gestión de datos como Assembla y Tortoise o de desarrollo de aplicaciones, como Eclipse o NetBeans. Trata de llevar al ámbito más profesional, la realización de una aplicación Java. Para ello se respetarán los convenios a la hora de denominaciones de clases, así como los métodos, etc., y la realización d...
Korsholm, Stephan E.; Søndergaard, Hans; Ravn, Anders Peter
The Java programming language was originally developed for embedded systems, but the resource requirements of previous and current Java implementations – especially memory consumption – tend to exclude them from being used on a significant class of resource constrained embedded platforms. The con......The Java programming language was originally developed for embedded systems, but the resource requirements of previous and current Java implementations – especially memory consumption – tend to exclude them from being used on a significant class of resource constrained embedded platforms...... by integrating the following: (1) a lean virtual machine without any external dependencies on POSIX-like libraries or other OS functionalities; (2) a hardware abstraction layer, implemented almost entirely in Java through the use of hardware objects, first level interrupt handlers, and native variables; and (3....... An evaluation of the presented solution shows that the miniCDj benchmark gets reduced to a size where it can run on resource constrained platforms....
Korsholm, Stephan Erbs; Søndergaard, Hans; Ravn, Anders P.
The Java programming language was originally developed for embedded systems, but the resource requirements of previous and current Java implementations - especially memory consumption - tend to exclude them from being used on a significant class of resource constrained embedded platforms. The con......The Java programming language was originally developed for embedded systems, but the resource requirements of previous and current Java implementations - especially memory consumption - tend to exclude them from being used on a significant class of resource constrained embedded platforms...... by integrating: (1) a lean virtual machine (HVM) without any external dependencies on POSIX-like libraries or other OS functionalities, (2) a hardware abstraction layer, implemented almost entirely in Java through the use of hardware objects, first level interrupt handlers, and native variables, and (3....... An evaluation of the presented solution shows that the miniCDj benchmark gets reduced to a size where it can run on resource constrained platforms....
Saunder, T.H.C.; O'Keefe, G.J.; Scott, A.M.
Full text: The Java Advanced Medical Image Toolkit (jAMIT) has been developed at the Center for PET and Department of Nuclear Medicine in an effort to provide a suite of tools that can be utilised in applications required to perform analysis, processing and visualisation of medical images. jAMIT uses Java Advanced Imaging (JAI) to combine the platform independent nature of Java with the speed benefits associated with native code. The object-orientated nature of Java allows the production of an extensible and robust package which is easily maintained. In addition to jAMIT, a Medical Image VO API called Sushi has been developed to provide access to many commonly used image formats. These include DICOM, Analyze, MINC/NetCDF, Trionix, Beat 6.4, Interfile 3.2/3.3 and Odyssey. This allows jAMIT to access data and study information contained in different medical image formats transparently. Additional formats can be added at any time without any modification to the jAMIT package. Tools available in jAMIT include 2D ROI Analysis, Palette Thresholding, Image Groping, Image Transposition, Scaling, Maximum Intensity Projection, Image Fusion, Image Annotation and Format Conversion. Future tools may include 2D Linear and Non-linear Registration, PET SUV Calculation, 3D Rendering and 3D ROI Analysis. Applications currently using JAMIT include Antibody Dosimetry Analysis, Mean Hemispheric Blood Flow Analysis, QuickViewing of PET Studies for Clinical Training, Pharamcodynamic Modelling based on Planar Imaging, and Medical Image Format Conversion. The use of jAMIT and Sushi for scripting and analysis in Matlab v6.1 and Jython is currently being explored. Copyright (2002) The Australian and New Zealand Society of Nuclear Medicine Inc
Mckee, James W.
The objective is to develop a system that will allow a person not necessarily skilled in the art of programming robots to quickly and naturally create the necessary data and commands to enable a robot to perform a desired task. The system will use a menu driven graphical user interface. This interface will allow the user to input data to select objects to be moved. There will be an imbedded expert system to process the knowledge about objects and the robot to determine how they are to be moved. There will be automatic path planning to avoid obstacles in the work space and to create a near optimum path. The system will contain the software to generate the required robot instructions.
Ari Satmoko; Edi Karyanta; Dedy Haryanto; Abdul Hafid; Sudarno; Kussigit Santosa; Pinitoyo, A.; Demon Handoyo
One of several steps in industrial plant construction is preparing piping layout drawing. In this drawing, pipe and all other pieces such as instrumentation, equipment, structure should be modeled A software called CAPD was developed to replace and to behave as piping drafter or designer. CAPD was successfully developed by adding both subprogram CHKUPIPE and CHKMANV. The first subprogram can check and gives warning if there is piping pocket in the piping system. The second can identify valve position and then check whether valve can be handled by operator hand The main program CAPD was also successfully modified in order to be capable in limiting the maximum length of straight pipe. By limiting the length, piping flexibility can be increased. (author)
Cuperus, J.; Charrue, P.; DiMaio, F.; Kostro, K.; Watson, W.
The CERN PS and SL accelerator control groups developed a common application programming interface (API) in Java . Part of this API is a directory service that provide information about the underlying hardware and software. With this information, it is possible to write generic programs that do general actions on lists of devices without hard coding of device names. And, starting from a device name, full details about related devices, the device itself and its class and properties, can be obtained, including the meaning of bits and bit-patterns in status words. The interface definition is independent of any implementation but a reference implementation is provided using Java Database Connectivity (JDBC) against a set of tables in a relational database. Data from very different systems can be brought together and presented in a uniform way to the user. The full potential of the directory service is reached when it is used in software components (Java Beans)
Irmak, A; Bumin, G; Irmak, R
In direct proportion to current technological developments, both the computer usage in the workplaces is increased and requirement of leaving the desk for an office worker in order to photocopy a document, send or receive an e-mail is decreased. Therefore, office workers stay in the same postures accompanied by long periods of keyboard usage. In recent years, with intent to reduce the incidence of work related musculoskeletal disorders several exercise reminder software programs have been developed. The purpose of this study is to evaluate the effectiveness of the exercise reminder software program on office workers' perceived pain level, work performance and quality of life. 39 healthy office workers accepted to attend the study. Participants were randomly split in to two groups, control group (n = 19) and intervention group (n = 20). Visual Analogue Scale to evaluate the perceived pain was administered all of the participants in the beginning and at the end of the study. The intervention group used the program for 10 weeks. Findings showed that the control group VAS scores remained the same, but the intervention group VAS scores decreased in a statistically significant way (p software programs may help to reduce perceived pain among office workers. Further long term studies with more subjects are needed to describe the effects of these programs and the mechanism under these effects.
This report describes Jess, a clone of the popular CLIPS expert system shell written entirely in Java. Jess supports the development of rule-based expert systems which can be tightly coupled to code written in the powerful, portable Java language. The syntax of the Jess language is discussed, and a comprehensive list of supported functions is presented. A guide to extending Jess by writing Java code is also included.
The paper considers the possibility and expediency of developing mathematical software for VVER-1000 ICMS in Ukraine. This mathematical software is among the most important conditions for implementation of the expanded nuclear fuel diversification program. The top-level software is to be developed based on SSTC own studies in the development of codes for power distribution recovery, which were successfully used previously for RBMK-1000 safety analysis
José E. Moreira
Full Text Available When Java was first introduced, there was a perception that its many benefits came at a significant performance cost. In the particularly performance-sensitive field of numerical computing, initial measurements indicated a hundred-fold performance disadvantage between Java and more established languages such as Fortran and C. Although much progress has been made, and Java now can be competitive with C/C++ in many important situations, significant performance challenges remain. Existing Java virtual machines are not yet capable of performing the advanced loop transformations and automatic parallelization that are now common in state-of-the-art Fortran compilers. Java also has difficulties in implementing complex arithmetic efficiently. These performance deficiencies can be attacked with a combination of class libraries (packages, in Java that implement truly multidimensional arrays and complex numbers, and new compiler techniques that exploit the properties of these class libraries to enable other, more conventional, optimizations. Two compiler techniques, versioning and semantic expansion, can be leveraged to allow fully automatic optimization and parallelization of Java code. Our measurements with the NINJA prototype Java environment show that Java can be competitive in performance with highly optimized and tuned Fortran code.
Schoeberl, Martin; Søndergaard, Hans; Thomsen, Bent
We propose a new, minimal specification for real-time Java for safety critical applications. The intention is to provide a profile that supports programming of applications that can be validated against safety critical standards such as DO-178B . The proposed profile is in line with the Java...... specification request JSR-302: Safety Critical Java Technology, which is still under discussion. In contrast to the current direction of the expert group for the JSR-302 we do not subset the rather complex Real-Time Specification for Java (RTSJ). Nevertheless, our profile can be implemented on top of an RTSJ...
Lassen, Kristian Bisgaard; Westergaard, Michael
the modeller to call methods on Java ob jects. This paper is about how the stub code is generated, i.e., representing Java classes to Standard ML to be able to call Java code in the CPN models, and how the BRITNeY Suite framework handles the invocations of the stub code. The contribution of this paper is give......CPN Tools is a well known editor for Colored Petri nets (CPNs) that is capable of doing state space and performance analysis. The BRITNeY Suite has added yet another feature to CPN Tools for integrating CPN models with Java programs, by providing stubs accessible from the models, to allow...
Java EE 7: The Big Picture uniquely explores the entire Java EE 7 platform in an all-encompassing style while examining each tier of the platform in enough detail so that you can select the right technologies for specific project needs. In this authoritative guide, Java expert Danny Coward walks you through the code, applications, and frameworks that power the platform. Take full advantage of the robust capabilities of Java EE 7, increase your productivity, and meet enterprise demands with help from this Oracle Press resource.
Søndergaard, Hans; Bøgholm, Thomas; Hansen, Rene Rydhof
A Java profile suitable for development of high integrity embedded systems is presented. It is based on event handlers which are grouped in missions and equipped with respectively private handler memory and shared mission memory. This is a result of our previous work on developing a Java profile......, and is directly inspired by interactions with the Open Group on their on-going work on a safety critical Java profile (JSR-302). The main contribution is an arrangement of the class hierarchy such that the proposal is a generalization of Real-Time Specification for Java (RTSJ). A further contribution...
Thomsen, Bent; Ravn, Anders Peter; Søndergaard, Hans
This paper presents an implementation of the Ravenscar-Java profile. While most implementations of the profile are reference-implementations showing that it is possible to implement the profile, our implementation is aimed at industrial applications. It uses a dedicated real-time Java processor......, since we want to investigate if the Ravenscar-Java profile, implemented on a Java processor, is efficient for real applications. During the implementation some ambiguities and weaknesses of the profile were uncovered. However, test examples indicate that the profile is suitable for development...... of realistic real-time programs....
This document details information on the low-level radio frequency (LLRF) software control package. The chapters in this manual cover the following topics: Chapter one describes the general operating principles of the LabVIEW software package, and also discusses the high-level menu panels which allow access to the individual control panels. Chapter two covers the control panels used for conditioning the cavity, and for controlling the accelerator under normal operating conditions. Chapter three provides information on the resonance detection and reflectometer calibration function, including the setup and status panels for each. Chapter four contain instructions on the use of those panels dedicated to controlling the cavity RF field. Chapter five discusses the control panels that provide setup and status information on the diagnostic monitor subsystem. Chapter six outlines those panels used to control the timing functions provided by the LLRF system. Finally, chapter seven describes the control panels used to monitor and adjust the alarm and limit functions of the system. Throughout the document, it is assumed that the reader has a general working knowledge of accelerators, high-power amplifier equipment, and low-level RF (LLRF) control systems. References are listed as footnotes as they occur in the text
Martinez, Ralph; Shah, Pinkesh J.; Yu, Yuan-Pin
The current version of the Global PACS software system uses a Java-based implementation of the Remote Consultation and Diagnosis (RCD) system. The Java RCD includes a multimedia consultation session between physicians that includes text, static image, image annotation, and audio data. The JAVA RCD allows 2-4 physicians to collaborate on a patient case. It allows physicians to join the session via WWW Java-enabled browsers or stand alone RCD application. The RCD system includes a distributed database archive system for archiving and retrieving patient and session data. The RCD system can be used for store and forward scenarios, case reviews, and interactive RCD multimedia sessions. The RCD system operates over the Internet, telephone lines, or in a private Intranet. A multimedia consultation session can be recorded, and then played back at a later time for review, comments, and education. A session can be played back using Java-enabled WWW browsers on any operating system platform. The JAVA RCD system shows that a case diagnosis can be captured digitally and played back with the original real-time temporal relationships between data streams. In this paper, we describe design and implementation of the RCD session playback.
Soppera, Nicolas; Bossant, Manuel; Cabellos, Oscar; Dupont, Emmeric; Díez, Carlos J.
JANIS (JAva-based Nuclear Data Information System) software is developed by the OECD Nuclear Energy Agency (NEA) Data Bank to facilitate the visualization and manipulation of nuclear data, giving access to evaluated nuclear data libraries, such as ENDF, JEFF, JENDL, TENDL etc., and also to experimental nuclear data (EXFOR) and bibliographical references (CINDA). It is available as a standalone Java program, downloadable and distributed on DVD and also a web application available on the NEA website. One of the main new features in JANIS is the scripting capability via command line, which notably automatizes plots generation and permits automatically extracting data from the JANIS database. Recent NEA software developments rely on these JANIS features to access nuclear data, for example the Nuclear Data Sensitivity Tool (NDaST) makes use of covariance data in BOXER and COVERX formats, which are retrieved from the JANIS database. New features added in this version of the JANIS software are described along this paper with some examples.
Full Text Available Recent developments in processor capabilities, software tools, programming languages and programming paradigms have brought about new approaches to high performance computing. A steadfast component of this dynamic evolution has been the scientific community’s reliance on established scientific packages. As a consequence, programmers of high‐performance applications are reluctant to embrace evolving languages such as Java. This paper describes the Java‐to‐C Interface (JCI tool which provides application programmers wishing to use Java with immediate accessibility to existing scientific packages. The JCI tool also facilitates rapid development and reuse of existing code. These benefits are provided at minimal cost to the programmer. While beneficial to the programmer, the additional advantages of mixed‐language programming in terms of application performance and portability are addressed in detail within the context of this paper. In addition, we discuss how the JCI tool is complementing other ongoing projects such as IBM’s High‐Performance Compiler for Java (HPCJ and IceT’s metacomputing environment.
Snellenburg, J.J.; Laptenok, S.; Seger, R.; Mullen, K.M.; van Stokkum, I.H.M.
In this work the software application called Glotaran is introduced as a Java-based graphical user interface to the R package TIMP, a problem solving environment for fitting superposition models to multi-dimensional data. TIMP uses a command-line user interface for the interaction with data, the
Java is an object-oriented programming language. From a software engineering perspective, object-oriented design and programming is used at the architectural design, and structured design and programming is used at the detailed design within methods. As such, structured programming skills are fundamental to more advanced object-oriented…
Heffelfinger, David R
The book is aimed at Java developers who wish to develop Java EE applications while taking advantage of NetBeans functionality to automate repetitive tasks. Familiarity with NetBeans or Java EE is not assumed.
Friedel, Caroline C; Kaufmann, Stefanie; Dölken, Lars; Zimmer, Ralf
Recent improvements in experimental technologies now allow measurements of de novo transcription and/or RNA decay at whole transcriptome level and determination of precise transcript half-lives. Such transcript half-lives provide important insights into the regulation of biological processes and the relative contributions of RNA decay and de novo transcription to differential gene expression. In this article, we present HALO (Half-life Organizer), the first software for the precise determination of transcript half-lives from measurements of RNA de novo transcription or decay determined with microarrays or RNA-seq. In addition, methods for quality control, filtering and normalization are supplied. HALO provides a graphical user interface, command-line tools and a well-documented Java application programming interface (API). Thus, it can be used both by biologists to determine transcript half-lives fast and reliably with the provided user interfaces as well as software developers integrating transcript half-life analysis into other gene expression profiling pipelines. Source code, executables and documentation are available at http://www.bio.ifi.lmu.de/software/halo.
Learn how to code, package, deploy, and test functional Enterprise JavaBeans with the latest edition of this bestselling guide. Written by the developers of JBoss EJB 3.1, this book not only brings you up to speed on each component type and container service in this implementation, it also provides a workbook with several hands-on examples to help you gain immediate experience with these components. With version 3.1, EJB's server-side component model for building distributed business applications is simpler than ever. But it's still a complex technology that requires study and lots of practi
COTS) software , and software as a service ( SaaS ). L2: Define and analyze risks in the acquisition of contracted software , COTS software , and SaaS ...2010a]: Application of technologies and processes to achieve a required level of confidence that software systems and services function in the...
Stasinakis, Panagiotis K.; Nicolaou, Despoina
The molecular structure of living organisms and the complex interactions amongst its components are the basis for the diversity observed at the macroscopic level. Proteins and nucleic acids are some of the major molecular components, and play a key role in several biological functions, such as those of development and evolution. This article…
V. S. Bivde
Full Text Available Coupling is an interdependence relationship between the modules of object-oriented software. It is a property with the most influence on quality attributes of the object-oriented software. Coupling with high values results in complex software design hence software professionals try to keep the coupling as low as possible. The values of coupling metrics are dependent on the type of input source code. Reusability is the main feature of object-oriented languages, so coupling occurs due to reuse of code modules. This paper investigates a correlation between the values of coupling metrics and the number of classes in the multimedia Java code. Here, a case study of a banking multimedia Java project with its forty different versions is conducted to comments on this correlation. The analysis of the results shows that, if the input source code is with a large number of classes then it results in high coupling values.
D.P. van der Nest
Full Text Available This article explores the existing practices of internal audit functions in the locally controlled South African banking industry regarding the use of Generalised Audit Software (GAS, against a benchmark developed from recognised data analytic maturity models, in order to assess the current maturity levels of the locally controlled South African banks in the use of this software for tests of controls. The literature review indicates that the use of GAS by internal audit functions is still at a relatively low level of maturity, despite the accelerating adoption of information technology and generation of big data within organisations. The empirical results of this article also confirm that the maturity of the use of GAS by the internal auditors employed by locally controlled South African banks is still lower than expected, given that the world, especially from a business perspective is now fully immersed in a technological-driven business environment. This study has since been extended to other industries in the following countries namely, Canada, Columbia, Portugal and Australia
Setiawan Abdullah, Atje; Nurani Ruchjana, Budi; Hidayat, Akik; Akmal; Setiana, Deni
Clustering of query based data mining to identify the meaning of the naming of the village in Java island, done by exploring the database village with three categories namely: prefix in the naming of the village, syllables contained in the naming of the village, and full word naming of the village which is actually used. While syllables contained in the naming of the village are classified by the behaviour of the culture and character of each province that describes the business, feelings, circumstances, places, nature, respect, plants, fruits, and animals. Sources of data used for the clustering of the naming of the village on the island of Java was obtained from Geospatial Information Agency (BIG) in the form of a complete village name data with the coordinates in six provinces in Java, which is arranged in a hierarchy of provinces, districts / cities, districts and villages. The research method using KDD (Knowledge Discovery in Database) through the process of preprocessing, data mining and postprocessing to obtain knowledge. In this study, data mining applications to facilitate the search query based on the name of the village, using Java software. While the contours of a map is processed using ArcGIS software. The results of the research can give recommendations to stakeholders such as the Department of Tourism to describe the meaning of the classification of naming the village according to the character in each province at Java island.
Maximizing the physics performance of detectors being designed for the International Linear Collider, while remaining sensitive to cost constraints, requires a powerful, efficient, and flexible simulation, reconstruction and analysis environment to study the capabilities of a large number of different detector designs. The preparation of Letters Of Intent for the International Linear Collider involved the detailed study of dozens of detector options, layouts and readout technologies; the final physics benchmarking studies required the reconstruction and analysis of hundreds of millions of events. We describe the Java-based software toolkit (org.lcsim) which was used for full event reconstruction and analysis. The components are fully modular and are available for tasks from digitization of tracking detector signals through to cluster finding, pattern recognition, track-fitting, calorimeter clustering, individual particle reconstruction, jet-finding, and analysis. The detector is defined by the same xml input files used for the detector response simulation, ensuring the simulation and reconstruction geometries are always commensurate by construction. We discuss the architecture as well as the performance.
di Pisa, F
Over the past few years, the now open source Adobe Flex Framework has been adopted by the Java community as the preferred framework for Java RIAs using Flash for the presentation layer. Flex helps Java developers to build and maintain expressive web/desktop applications that deploy consistently on all major browsers, desktops, and operating systems. Beginning Java and Flex describes new, simpler, and faster ways to develop enterprise RIAs. This book is not only for Java or Flex developers, but also for all web developers who want to increase their productivity and the quality of their developm
Lee, S; Itoh, R; Katayama, N; Mineo, S
The Belle collaboration has been trying for 10 years to reveal the mystery of the current matter-dominated universe. However, much more statistics is required to search for New Physics through quantum loops in decays of B mesons. In order to increase the experimental sensitivity, the next generation B-factory, SuperKEKB, is planned. The design luminosity of SuperKEKB is 8 x 10 35 cm −2 s −1 a factor 40 above KEKB's peak luminosity. At this high luminosity, the level 1 trigger of the Belle II experiment will stream events of 300 kB size at a 30 kHz rate. To reduce the data flow to a manageable level, a high-level trigger (HLT) is needed, which will be implemented using the full offline reconstruction on a large scale PC farm. There, physics level event selection is performed, reducing the event rate by ∼ 10 to a few kHz. To execute the reconstruction the HLT uses the offline event processing framework basf2, which has parallel processing capabilities used for multi-core processing and PC clusters. The event data handling in the HLT is totally object oriented utilizing ROOT I/O with a new method of object passing over the UNIX socket connection. Also under consideration is the use of the HLT output as well to reduce the pixel detector event size by only saving hits associated with a track, resulting in an additional data reduction of ∼ 100 for the pixel detector. In this contribution, the design and implementation of the Belle II HLT are presented together with a report of preliminary testing results.
Fadul, Jose E
... from continuing while each waits for resources to be freed by the continuation of the other. This thesis proposes a flow-insensitive interprocedural static analysis that detects the possibility that a program can deadlock at runtime...
Muhamamd Guzali Tafalas; Deddy T. Tikson; Baharuddin; Hj. Hasniati
The purpose of this study is to explain and analyze in detail The positive association Government spending in education PP with a Gross Enrolment Ratio GER and net enrollment ratio NER in East Java Province. Government spending on education is less associated significantly to the gross enrollment ratio at primary education. gross enrollment GER especially at the level of elementary education. As for the middle and high school level of education government spending on education was significant...
Shakespeare, T.P.; Mukherjee, R.K.; Gebski, V.J.
Confidence levels, clinical significance curves, and risk-benefit contours are tools improving analysis of clinical studies and minimizing misinterpretation of published results, however no software has been available for their calculation. The objective was to develop software to help clinicians utilize these tools. Excel 2000 spreadsheets were designed using only built-in functions, without macros. The workbook was protected and encrypted so that users can modify only input cells. The workbook has 4 spreadsheets for use in studies comparing two patient groups. Sheet 1 comprises instructions and graphic examples for use. Sheet 2 allows the user to input the main study results (e.g. survival rates) into a 2-by-2 table. Confidence intervals (95%), p-value and the confidence level for Treatment A being better than Treatment B are automatically generated. An additional input cell allows the user to determine the confidence associated with a specified level of benefit. For example if the user wishes to know the confidence that Treatment A is at least 10% better than B, 10% is entered. Sheet 2 automatically displays clinical significance curves, graphically illustrating confidence levels for all possible benefits of one treatment over the other. Sheet 3 allows input of toxicity data, and calculates the confidence that one treatment is more toxic than the other. It also determines the confidence that the relative toxicity of the most effective arm does not exceed user-defined tolerability. Sheet 4 automatically calculates risk-benefit contours, displaying the confidence associated with a specified scenario of minimum benefit and maximum risk of one treatment arm over the other. The spreadsheet is freely downloadable at www.ontumor.com/professional/statistics.htm A simple, self-explanatory, freely available spreadsheet calculator was developed using Excel 2000. The incorporated decision-making tools can be used for data analysis and improve the reporting of results of any
The resultant network-based software tool was developed on object-oriented technology using Java. The study established that good management practices may still be applied by the Nigerian software industry that lacks expertise in software management. Multi-site development approach facilitates large projects by using ...
Power, David; Tabirca, S.; Tabirca, T.
The aim of this article is to propose a Java concurrent program for the Smarandache fimction based on an equation. Some results concerning the theoretical complexity of this program are proposed. Finally, the experimental results of the sequential and Java programs are given in order to demonstrate the efficiency of the conament implementation.
Writing graphics applications in Java using Swing can be quite a daunting experience which requires understanding of some large libraries, and fairly advanced aspects of Java. In these notes we will show that by using a small subset of the Swing package we can write a write range of graphics...
This paper reviews three major application configuration frameworks for Java-based applications: java.util.Properties, Apache Commons Configuration and Preferences API. Basic functionality of each framework is illustrated with code examples. Pros and cons of each framework are described in moderate detail. Suggestions are made about typical use cases for each framework.
Kiniry, Joseph R.; Cheong, Elaine
The Java Pre-Processor, or JPP for short, is a parsing pre-processor for the Java programming language. Unlike its namesake (the C/C++ Pre-Processor, cpp), JPP provides functionality above and beyond simple textual substitution. JPP's capabilities include code beautification, code standard conformance checking, class and interface specification and testing, and documentation generation.
Huisman, Marieke; Ahrendt, Wolfgang; Grahl, Daniel; Hentschel, Martin; Ahrendt, Wolfgang; Beckert, Bernhard; Bubel, Richard; Hähnle, Reiner; Schmitt, Peter H.; Ulbrich, Mattoas
This text is a general, self contained, and tool independent introduction into the Java Modeling Language, JML. It appears in a book about the KeY approach and tool, because JML is the dominating starting point of KeY style Java verification. However, this chapter does not depend on KeY, nor any
If you are completely new to either Java, Android, or game programming and are aiming to publish Android games, then this book is for you. This book also acts as a refresher for those who already have experience in Java on another platforms or other object-oriented languages.
This book is a mini tutorial with plenty of code examples and strategies to give you numerous options when building your own applications.""JBoss Weld CDI for Java Platform"" is written for developers who are new to dependency injection. A rudimentary knowledge of Java is required.
Maemunah, Imun, E-mail: firstname.lastname@example.org [Geological Agency, Ministry of Energy and Mineral Resources (Indonesia); Institute Technology of Bandung (Indonesia); Suparka, Emmy, E-mail: email@example.com; Puspito, Nanang T, E-mail: firstname.lastname@example.org [Institute Technology of Bandung (Indonesia); Hidayati, Sri, E-mail: email@example.com [Geological Agency, Ministry of Energy and Mineral Resources (Indonesia)
The 2006 Java Earthquake (Mw 7.2) has generated a tsunami that reached Pangandaran coastal plain with 9.7 m above sea level height of wave. In 2014 we examined the tsunami deposit exposed in shallow trenches along a∼300 m at 5 transect from shoreline to inland on Karapyak and Madasari, Pangandaran. We documented stratigraphically and sedimentologically, the characteristics of Java Tsunami deposit on Karapyak and Madasari and compared both sediments. In local farmland a moderately-sorted, brown soil is buried by a poorly-sorted, grey, medium-grained sand-sheet. The tsunami deposit was distinguished from the underlying soil by a pronounced increase in grain size that becomes finner upwards and landwards. Decreasing concentration of coarse size particles with distance toward inland are in agreement with grain size analysis. The thickest tsunami deposit is about 25 cm found at 84 m from shoreline in Madasari and about 15 cm found at 80 m from shoreline in Karapyak. The thickness of tsunami deposits in some transect become thinner landward but in some other transect lack a consistent suggested strongly affected by local topography. Tsunami deposits at Karapyak and Madasari show many similarities. Both deposits consist of coarse sand that sharply overlies a finer sandy soil. The presence mud drapes and other sedimentary structure like graded bedding, massive beds, mud clasts in many locations shows a dynamics process of tsunami waves. The imbrication coarse and shell fragments of the 2006 Java, tsunami deposits also provide information about the curent direction, allowing us to distinguish run up deposits from backwash deposits.
Maemunah, Imun; Suparka, Emmy; Puspito, Nanang T; Hidayati, Sri
The 2006 Java Earthquake (Mw 7.2) has generated a tsunami that reached Pangandaran coastal plain with 9.7 m above sea level height of wave. In 2014 we examined the tsunami deposit exposed in shallow trenches along a∼300 m at 5 transect from shoreline to inland on Karapyak and Madasari, Pangandaran. We documented stratigraphically and sedimentologically, the characteristics of Java Tsunami deposit on Karapyak and Madasari and compared both sediments. In local farmland a moderately-sorted, brown soil is buried by a poorly-sorted, grey, medium-grained sand-sheet. The tsunami deposit was distinguished from the underlying soil by a pronounced increase in grain size that becomes finner upwards and landwards. Decreasing concentration of coarse size particles with distance toward inland are in agreement with grain size analysis. The thickest tsunami deposit is about 25 cm found at 84 m from shoreline in Madasari and about 15 cm found at 80 m from shoreline in Karapyak. The thickness of tsunami deposits in some transect become thinner landward but in some other transect lack a consistent suggested strongly affected by local topography. Tsunami deposits at Karapyak and Madasari show many similarities. Both deposits consist of coarse sand that sharply overlies a finer sandy soil. The presence mud drapes and other sedimentary structure like graded bedding, massive beds, mud clasts in many locations shows a dynamics process of tsunami waves. The imbrication coarse and shell fragments of the 2006 Java, tsunami deposits also provide information about the curent direction, allowing us to distinguish run up deposits from backwash deposits
Berrocal, Eduardo; Bautista-Gomez, Leonardo; Di, Sheng; Lan, Zhiling; Cappello, Franck
Silent data corruption (SDC) poses a great challenge for high-performance computing (HPC) applications as we move to extreme-scale systems. Mechanisms have been proposed that are able to detect SDC in HPC applications by using the peculiarities of the data (more specifically, its “smoothness” in time and space) to make predictions. However, these data-analytic solutions are still far from fully protecting applications to a level comparable with more expensive solutions such as full replication. In this work, we propose partial replication to overcome this limitation. More specifically, we have observed that not all processes of an MPI application experience the same level of data variability at exactly the same time. Thus, we can smartly choose and replicate only those processes for which the lightweight data-analytic detectors would perform poorly. In addition, we propose a new evaluation method based on the probability that a corruption will pass unnoticed by a particular detector (instead of just reporting overall single-bit precision and recall). In our experiments, we use four applications dealing with different explosions. Our results indicate that our new approach can protect the MPI applications analyzed with 7–70% less overhead (depending on the application) than that of full duplication with similar detection recall.
Jensen, Simon Holm
Pankratius, Victor; Tichy, Walter F
With multicore processors now in every computer, server, and embedded device, the need for cost-effective, reliable parallel software has never been greater. By explaining key aspects of multicore programming, Fundamentals of Multicore Software Development helps software engineers understand parallel programming and master the multicore challenge. Accessible to newcomers to the field, the book captures the state of the art of multicore programming in computer science. It covers the fundamentals of multicore hardware, parallel design patterns, and parallel programming in C++, .NET, and Java. It
Garber, S. C.
An accounting package was developed which determines the computer resources utilized by a user during the execution of a particular program and updates a file containing accumulated resource totals. The accounting package is divided into two separate programs. The first program determines the total amount of computer resources utilized by a user during the execution of a particular program. The second program uses these totals to update a file containing accumulated totals of computer resources utilized by a user for a particular program. This package is useful to those persons who have several other users continually accessing and running programs from their accounts. The package provides the ability to determine which users are accessing and running specified programs along with their total level of usage.
Korocsec, D; Holobar, A; Divjak, M; Zazula, D
Medicine is a difficult thing to learn. Experimenting with real patients should not be the only option; simulation deserves a special attention here. Virtual Reality Modelling Language (VRML) as a tool for building virtual objects and scenes has a good record of educational applications in medicine, especially for static and animated visualisations of body parts and organs. However, to create computer simulations resembling situations in real environments the required level of interactivity and dynamics is difficult to achieve. In the present paper we describe some approaches and techniques which we used to push the limits of the current VRML technology further toward dynamic 3D representation of virtual environments (VEs). Our demonstration is based on the implementation of a virtual baby model, whose vital signs can be controlled from an external Java application. The main contributions of this work are: (a) outline and evaluation of the three-level VRML/Java implementation of the dynamic virtual environment, (b) proposal for a modified VRML Timesensor node, which greatly improves the overall control of system performance, and (c) architecture of the prototype distributed virtual environment for training in neonatal resuscitation comprising the interactive virtual newborn, active bedside monitor for vital signs and full 3D representation of the surgery room.
Hernandez Saiz, Alejandro; Cornejo Diaz, Nestor; Valdes Ramos, Maryzury; Martinez Gonzalez, Alina; Gonzalez Rodriguez, Niurka; Vergara Gil, Alex
The correct application of national and international regulations in the field of Radiological Safety requires the implementation of Radiation Safety Programs appropriate to the developed practice. These Programs demand the preparation and keeping of an important number of records and data, the compliance with working schedules, systematic quality controls, audits, delivery of information to the Regulatory Authority, the execution of radiological assessments, etc. Therefore, it is unquestionable the necessity and importance of having a computer tool to support the management of the information related to the Radiation Safety Program in any institution. The present work describes a computer program that allows the efficient management of these data. Its design was based on the IAEA International Basic Safety Standards recommendations and on the requirements of the Cuban national standards, with the objective of being flexible enough to be applied in most of the institutions using ionizing radiations. The most important records of Radiation Safety Programs were incorporated and reports can be generated by the users. An additional tools-module allows the user to access to a radionuclide data library, and to carry out different calculations of interest in radiological protection. The program has been developed in Borland Delphi and manages Microsoft Access databases. It is a user friendly code that aims to support the optimization of Radiation Safety Programs. The program contributes to save resources and time, as the generated information is electronically kept and transmitted. The code has different security access levels according to the user responsibility at the institution and also provides for the analysis of the introduced data, in a quick and efficient way, as well as to notice deadlines, the exceeding of reference levels and situations that require attention. (author)
Full Text Available With the rising popularity of robotics in our modern world there is an increase in the number of engineering programs that offer the basic Introduction to Robotics course. This common introductory robotics course generally covers the fundamental theory of robotics including robot kinematics, dynamics, differential movements, trajectory planning and basic computer vision algorithms commonly used in the field of robotics. Joint programming, the task of writing a program that directly controls the robot’s joint motors, is an activity that involves robot kinematics, dynamics, and trajectory planning. In this paper, we introduce a new educational robotics tool developed for teaching joint programming. The tool allows the student to write a program in a modified C language that controls the movement of the arm by controlling the velocity of each joint motor. This is a very important activity in the robotics course and leads the student to gain knowledge of how to build a robotic arm controller. Sample assignments are presented for different levels of difficulty.
Tso, Kam S.; Pajevski, Michael J.
Cybersecurity has become a great concern as threats of service interruption, unauthorized access, stealing and altering of information, and spreading of viruses have become more prevalent and serious. Application layer access control of applications is a critical component in the overall security solution that also includes encryption, firewalls, virtual private networks, antivirus, and intrusion detection. An access control solution, based on an open-source access manager augmented with custom software components, was developed to provide protection to both Web-based and Javabased client and server applications. The DISA Security Service (DISA-SS) provides common access control capabilities for AMMOS software applications through a set of application programming interfaces (APIs) and network- accessible security services for authentication, single sign-on, authorization checking, and authorization policy management. The OpenAM access management technology designed for Web applications can be extended to meet the needs of Java thick clients and stand alone servers that are commonly used in the JPL AMMOS environment. The DISA-SS reusable components have greatly reduced the effort for each AMMOS subsystem to develop its own access control strategy. The novelty of this work is that it leverages an open-source access management product that was designed for Webbased applications to provide access control for Java thick clients and Java standalone servers. Thick clients and standalone servers are still commonly used in businesses and government, especially for applications that require rich graphical user interfaces and high-performance visualization that cannot be met by thin clients running on Web browsers
Gorbunov, V.P.; Egorov, A.K.; Isaev, N.V.; Saprykin, E.M.
Problems on development and operation of automated control system (ACS) software of NPPs with the RBMK reactors are discussed. The ES computer with large on-line storage (not less than 1 Mbite) and fast response (not less than 300.000 of operations per a second) should enter the ACS composition. Several program complexes are used in the NPP ACS. The programs collected into the EhNERGIYa library are used to provide central control system operation. The information-retrival system called the Fuel file is used to automate NPP fuel motion account, as well as to estimate efficiency of fuel application, to carry out calculations of a fuel component of electric and heat energy production cost. The automated information system for unit operation efficiency analysis, which solves both plant and unit-level problems, including engineering and economical factors and complexing of operation parameter bank, is under trial operation
Halli , Nassim; Charles , Henri-Pierre; Méhaut , Jean-François
International audience; General purpose CPUs used in high performance computing (HPC) support a vector instruction set and an out-of-order engine dedicated to increase the instruction level parallelism. Hence, related optimizations are currently critical to improve the performance of applications requiring numerical computation. Moreover, the use of a Java run-time environment such as the HotSpot Java Virtual Machine (JVM) in high performance computing is a promising alternative. It benefits ...
Full Text Available Aims: In order to preserve its own progress, nursing training has to be utilized new training methods, in such a case that the teaching methods used by the nursing instructors enhance significant learning via preventing superficial learning in the students. Conceptual Map Method is one of the new training strategies playing important roles in the field. The aim of this study was to investigate the effectiveness of the designed software based on the mobile phone computer conceptual map on the learning level of the nursing students. Materials & Methods: In the semi-experimental study with pretest-posttest plan, 60 students, who were studying at the 5th semester, were studied at the 1st semester of 2015-16. Experimental group (n=30 from Meibod Nursing Faculty and control group (n=30 from Yazd Shahid Sadoughi Nursing Faculty were trained during the first 4 weeks of the semester, using computer conceptual map method and computer conceptual map method in mobile phone environment. Data was collected, using a researcher-made academic progress test including “knowledge” and “significant learning”. Data was analyzed in SPSS 21 software using Independent T, Paired T, and Fisher tests. Findings: There were significant increases in the mean scores of knowledge and significant learning in both groups before and after the intervention (p0.05. Nevertheless, the process of change of the scores of significant learning level between the groups was statistically significant (p<0.05. Conclusion: Presenting the course content as conceptual map in mobile phone environment positively affects the significant learning of the nursing students.
Perry, William L
Misiowiec, M; Buttner, M
CERN controls software is often developed on Java foundation. Some systems carry out a combination of data, network and processor intensive tasks within strict time limits. Hence, there is a demand for high performing, quasi real time solutions. Extensive prototyping of the new CERN monitoring and alarm software required us to address such expectations. The system must handle dozens of thousands of data samples every second, along its three tiers, applying complex computations throughout. To accomplish the goal, a deep understanding of multithreading, memory management and interprocess communication was required. There are unexpected traps hidden behind an excessive use of 64 bit memory or severe impact on the processing flow of modern garbage collectors. Tuning JVM configuration significantly affects the execution of the code. Even more important is the amount of threads and the data structures used between them. Accurately dividing work into independent tasks might boost system performance. Thorough profili...
Full Text Available This paper presents an efficient new method for performing the baseband mixing and despreading operations in a software-based GNSS receiver, and demonstrates that the method is capable of providing measurements for centimeter-level positioning accuracy. The method uses a single frequency carrier replica for the baseband mixing process, enabling all satellites to perform mixing simultaneously and yielding considerable computational savings. To compensate for signal-to-noise ratio (SNR losses caused by using a single frequency carrier replica, the integration interval after despreading is divided into subintervals, and the output from each subinterval then compensated for the known frequency error. Using this approach, receiver processing times are shown to be reduced by approximately 21% relative to the next fastest method when tracking seven satellites. The paper shows the mathematical derivation of the new algorithm, discusses practical considerations, and demonstrates its performance using simulations and real data. Results show that the new method is able to generate pseudorange and carrier phase measurements with the same accuracy as traditional methods. Stand-alone positioning accuracy is at the meter level, while differential processing can produce fixed ambiguity carrier phase positions accurate to the centimeter level.
M. S. Abubakar
Full Text Available Farm records are mostly manually kept on paper notebooks and folders where similar records are organized in one folder or spread sheet. These records are usually kept for many years therefore they becomes bulky and less organized. Consequently, it becomes difficult to search, update and tedious and time consuming to manage these records. This study was carried-out to overcome these problems associated with manual farm records keeping by developing user-friendly, easily accessible, reliable and secured software. The software was limited records keeping in crop production, livestock production, poultry production, employees, income and expenditure. The system was implemented using Java Server Faces (JSF for designing Graphical User Interface (GUI, Enterprises Java Beans (EJB for logic tier and MySQL database for storing farm records.
Ainsbury, Elizabeth A; Barnard, Stephen; Barrios, Lleonard; Fattibene, Paola; de Gelder, Virginie; Gregoire, Eric; Lindholm, Carita; Lloyd, David; Nergaard, Inger; Rothkamm, Kai; Romm, Horst; Scherthan, Harry; Thierens, Hubert; Vandevoorde, Charlot; Woda, Clemens; Wojcik, Andrzej
In this note, the authors describe the MULTIBIODOSE software, which has been created as part of the MULTIBIODOSE project. The software enables doses estimated by networks of laboratories, using up to five retrospective (biological and physical) assays, to be combined to give a single estimate of triage category for each individual potentially exposed to ionizing radiation in a large scale radiation accident or incident. The MULTIBIODOSE software has been created in Java. The usage of the software is based on the MULTIBIODOSE Guidance: the program creates a link to a single SQLite database for each incident, and the database is administered by the lead laboratory. The software has been tested with Java runtime environment 6 and 7 on a number of different Windows, Mac, and Linux systems, using data from a recent intercomparison exercise. The Java program MULTIBIODOSE_1.0.jar is freely available to download from http://www.multibiodose.eu/software or by contacting the software administrator: MULTIBIODOSEfirstname.lastname@example.org.
Oscar O. Rodríguez-Díaz
Full Text Available This paper presents the analysis, design and construction of a virtual simulator, in which the behavior of a non-lineal system as the rotational inverted pendulum is represented graphically in an interface. This uses an Applet of Java that allows users change parameters of the model. The use of this tool is a good alternative for bridging the gap between the theoretical concepts and the actual behaviors of a process. The server uses Matlab/Simulink as a calculation engine, taking advantage of its ease for constructing non-lineal models by using block diagrams. The user interface has been created by a free software tool called Easy Java Simulations that allows designing interactive graphical applications as 3D interfaces. Easy Java results an interesting tool for automatic control system education.
Learn Objective-C for Java Developers will guide experienced Java developers into the world of Objective-C. It will show them how to take their existing language knowledge and design patterns and transfer that experience to Objective-C and the Cocoa runtime library. This is the express train to productivity for every Java developer who dreamt of developing for Mac OS X or iPhone, but felt that Objective-C was too intimidating. So hop on and enjoy the ride!
Smart cards are widely used along with PayTV receivers to store secret user keys and to perform security functions to prevent any unauthorized viewing of PayTV channels. Java Card technology enables programs written in the Java programming language to run on smart cards. Smart cards represent one of the smallest computing platforms in use today. The memory configuration of a smart card are of the order of 4K of RAM, 72K of EEPROM, and 24K of ROM. Using Java card provides advantages to the ind...
The book adopts a step-by-step approach, starting from building the basics and adding to it gradually by using different tools and examples. The book sequence is easy to follow and all topics are fully illustrated showing you how to make good use of different performance diagnostic tools. If you are an experienced Java developer, architect, team leader, consultant, support engineer, or anyone else who needs performance tuning in your Java applications, and in particular, Java enterprise applications, this book is for you. No prior experience of performance tuning is required.
Knee, Richard H.; Cafolla, Ralph
Java is an object-oriented programming language of the Internet. It's popularity lies in its ability to create interactive Web sites across platforms. The most common Java programs are applications and applets, which adhere to a set of conventions that lets them run within a Java-compatible browser. Java is becoming an essential subject matter and…
Ćmil, Michał; Marchioni, Francesco
If you are a Java developer who wants to learn about Java EE, this is the book for you. It's also ideal for developers who already have experience with the Java EE platform but would like to learn more about the new Java EE 7 features by analyzing fully functional sample applications using the new application server WildFly.
Jensen, Casper Svenning; Møller, Anders; Su, Zhendong
The objective of the thesis was to implement or modify an existing Java virtual machine (JVM) in a way that it will allow insight into statistics of the executed Java instructions of an executed user program. The functionality will allow analysis of the algorithms in Java environment. After studying the theory of Java and Java virtual machine, we decided to modify an existing Java virtual machine. We chose JamVM which is a lightweight, open-source Java virtual machine under GNU license. The i...
Java Foundation Classes in a Nutshell is an indispensable quick reference for Java programmers who are writing applications that use graphics or graphical user interfaces. The author of the bestsellingJava in a Nutshell has written fast-paced introductions to the Java APIs that comprise the Java Foundation Classes (JFC), such as the Swing GUI components and Java 2D, so that you can start using these exciting new technologies right away. This book also includes O'Reilly's classic-style, quick-reference material for all of the classes in the javax.swing and java.awt packages and their numerous
Full Text Available JAVA language in recent years is widely used for the reason that integrates multiple information technologies. JAVA benefits are not fully exploited. The article discusses some aspects of the design of Data Mining algorithms in Java.JAVA: NATURA, FRUMUSEŢEA ŞI DIFICULTĂTILE PROGRAMĂRIILimbajul JAVA în ultimii ani se utilizează pe scară largă dat fiind că integrează mai multe tehnologii informaţionale. Avantajele JAVA nu sunt pe deplin exploatate. În articol sunt discutate unele aspecte de proiectare a algoritmilor de Data Mining în limbajul JAVA.
Rios Rivas, Juan Ricardo; Schoeberl, Martin
The safety-critical Java (SCJ) specification provides a restricted set of the Java language intended for applications that require certification. In order to test the specification, implementations are emerging and the need to evaluate those implementations in a systematic way is becoming important. In this paper we evaluate our SCJ implementation which is based on the Java Optimized Processor JOP and we measure different performance and timeliness criteria relevant to hard real-time systems....
Full Text Available In an effort to support the growing trend of the Java programming language and to promote web-based personalized education, the Java Intelligent Tutoring System (JITS was designed and developed. This tutoring system is unique in a number of ways. Most Intelligent Tutoring Systems require the teacher to author problems with corresponding solutions. JITS, on the other hand, requires the teacher to only supply the problem and problem specification. JITS is designed to "intelligently" examine the student's submitted code and determines appropriate feedback based on a number of factors such as JITS' cognitive model of the student, the student's skill level, and problem details. JITS is intended to be used by beginner programming students in their first year of College or University. This paper discusses the important aspects of the design and development of JITS, the qualitative methods and procedures, and findings. Research was conducted at the Sheridan Institute of Technology and Advanced Learning, Ontario, Canada.
David M. Doolin
Full Text Available The JLAPACK project provides the LAPACK numerical subroutines translated from their subset Fortran 77 source into class files, executable by the Java Virtual Machine (JVM and suitable for use by Java programmers. This makes it possible for Java applications or applets, distributed on the World Wide Web (WWW to use established legacy numerical code that was originally written in Fortran. The translation is accomplished using a special purpose Fortran‐to‐Java (source‐to‐source compiler. The LAPACK API will be considerably simplified to take advantage of Java’s object‐oriented design. This report describes the research issues involved in the JLAPACK project, and its current implementation and status.
Chen, J.; Akers, W.; Chen, Y.; Watson, W.
The emergence of high speed wide area networks makes grid computing a reality. However grid applications that need reliable data transfer still have difficulties to achieve optimal TCP performance due to network tuning of TCP window size to improve the bandwidth and to reduce latency on a high speed wide area network. The authors present a pure Java package called JPARSS (Java Parallel Secure Stream) that divides data into partitions that are sent over several parallel Java streams simultaneously and allows Java or Web applications to achieve optimal TCP performance in a gird environment without the necessity of tuning the TCP window size. Several experimental results are provided to show that using parallel stream is more effective than tuning TCP window size. In addition X.509 certificate based single sign-on mechanism and SSL based connection establishment are integrated into this package. Finally a few applications using this package will be discussed
Schoeberl, Martin; Korsholm, Stephan; Kalibera, Tomas
Embedded systems use specialized hardware devices to interact with their environment, and since they have to be dependable, it is attractive to use a modern, type-safe programming language like Java to develop programs for them. Standard Java, as a platform-independent language, delegates access...... to devices, direct memory access, and interrupt handling to some underlying operating system or kernel, but in the embedded systems domain resources are scarce and a Java Virtual Machine (JVM) without an underlying middleware is an attractive architecture. The contribution of this article is a proposal...... for Java packages with hardware objects and interrupt handlers that interface to such a JVM. We provide implementations of the proposal directly in hardware, as extensions of standard interpreters, and finally with an operating system middleware. The latter solution is mainly seen as a migration path...
Biju, Soly Mathew
Many software development firms are now adopting the agile software development method. This method involves the customer at every level of software development, thus reducing the impact of change in the requirement at a later stage. In this article, the principles of the agile method for software development are explored and there is a focus on…
Wang, Rongcun; Huang, Rubing; Qu, Binbin
The object-oriented software systems frequently evolve to meet new change requirements. Understanding the characteristics of changes aids testers and system designers to improve the quality of softwares. Identifying important modules becomes a key issue in the process of evolution. In this context, a novel network-based approach is proposed to comprehensively investigate change distributions and the correlation between centrality measures and the scope of change propagation. First, software dependency networks are constructed at class level. And then, the number of times of cochanges among classes is minded from software repositories. According to the dependency relationships and the number of times of cochanges among classes, the scope of change propagation is calculated. Using Spearman rank correlation analyzes the correlation between centrality measures and the scope of change propagation. Three case studies on java open source software projects Findbugs, Hibernate, and Spring are conducted to research the characteristics of change propagation. Experimental results show that (i) change distribution is very uneven; (ii) PageRank, Degree, and CIRank are significantly correlated to the scope of change propagation. Particularly, CIRank shows higher correlation coefficient, which suggests it can be a more useful indicator for measuring the scope of change propagation of classes in object-oriented software system.
Zhao, Shuai; Wellings, Andy; Korsholm, Stephan Erbs
The current version of the Safety Critical Java (SCJ) specification defines three compliance levels. Level 0 targets single processor programs while Level 1 and 2 can support multiprocessor platforms. Level 1 programs must be fully partitioned but Level 2 programs can also be more globally...... scheduled. As of yet, there is no official Reference Implementation for SCJ. However, the icecap project has produced a Safety-Critical Java Run-time Environment based on the Hardware-near Virtual Machine (HVM). This supports SCJ at all compliance levels and provides an implementation of the safety......-critical Java (javax.safetycritical) package. This is still work-in-progress and lacks certain key features. Among these is the ability to support multiprocessor platforms. In this paper, we explore two possible options to adding multiprocessor support to this environment: the “green thread” and the “native...
Kinnaman, Daniel E.; And Others
Reviews four educational software packages for Apple, IBM, and Tandy computers. Includes "How the West was One + Three x Four,""Mavis Beacon Teaches Typing,""Math and Me," and "Write On." Reviews list hardware requirements, emphasis, levels, publisher, purchase agreements, and price. Discusses the strengths…
Tofan, Daniel C.
This paper describes an upper-level undergraduate and graduate-level course on computers in chemical education that was developed and offered for the first time in Fall 2007. The course provides future chemistry teachers with exposure to current software tools that can improve productivity in teaching, curriculum development, and education…
Farias, Gonzalo; Cervin, Anton; Arzén, Karl-Erik; Dormido, Sebastián; Esquembre, Francisco
This paper introduces a new Open Source Java library suited for the simulation of embedded control systems. The library is based on the ideas and architecture of TrueTime, a toolbox of Matlab devoted to this topic, and allows Java programmers to simulate the performance of control processes which run in a real time environment. Such simulations can improve considerably the learning and design of multitasking real-time systems. The choice of Java increases considerably the usability of our library, because many educators program already in this language. But also because the library can be easily used by Easy Java Simulations (EJS), a popular modeling and authoring tool that is increasingly used in the field of Control Education. EJS allows instructors, students, and researchers with less programming capabilities to create advanced interactive simulations in Java. The paper describes the ideas, implementation, and sample use of the new library both for pure Java programmers and for EJS users. The JTT library and some examples are online available on http://lab.dia.uned.es/jtt.
Hainey, Thomas; Connolly, Thomas M.; Stansfield, Mark; Boyle, Elizabeth A.
A highly important part of software engineering education is requirements collection and analysis which is one of the initial stages of the Database Application Lifecycle and arguably the most important stage of the Software Development Lifecycle. No other conceptual work is as difficult to rectify at a later stage or as damaging to the overall…
Soppera, N.; Bossant, M.; Dupont, E.
JANIS is software developed to facilitate the visualization and manipulation of nuclear data, giving access to evaluated data libraries, and to the EXFOR and CINDA databases. It is stand-alone Java software, downloadable from the web and distributed on DVD. Used offline, the system also makes use of an internet connection to access the NEA Data Bank database. It is now also offered as a full web application, only requiring a browser. The features added in the latest version of the software and this new web interface are described
Grain is a data analysis system developed to be used with the novel Total Data Readout data acquisition system. In Total Data Readout all the electronics channels are read out asynchronously in singles mode and each data item is timestamped. Event building and analysis has to be done entirely in the software post-processing the data stream. A flexible and efficient event parser and the accompanying software system have been written entirely in Java. The design and implementation of the software are discussed along with experiences gained in running real-life experiments
Geng, Z.; Ayvazyan, V.; Simrock, S.
The superconducting linear accelerator of the Free-Electron Laser at Hamburg (FLASH) provides high performance electron beams to the lasing system to generate synchrotron radiation to various users. The Low-Level RF (LLRF) system is used to maintain the beam stabilities by stabilizing the RF field in the superconducting cavities with feedback and feed forward algorithms. The LLRF applications are sets of software to perform RF system model identification, control parameters optimization, exception detection and handling, so as to improve the precision, robustness and operability of the LLRF system. In order to implement the LLRF applications in the hardware with multiple distributed processors, an optimized architecture of the software is required for good understandability, maintainability and extendibility. This paper presents the design of the LLRF application software architecture based on the software engineering approach for FLASH. (authors)
Adamusiak, Tomasz; Burdett, Tony; Kurbatova, Natalja; Joeri van der Velde, K; Abeygunawardena, Niran; Antonakaki, Despoina; Kapushesky, Misha; Parkinson, Helen; Swertz, Morris A
Ontologies have become an essential asset in the bioinformatics toolbox and a number of ontology access resources are now available, for example, the EBI Ontology Lookup Service (OLS) and the NCBO BioPortal. However, these resources differ substantially in mode, ease of access, and ontology content. This makes it relatively difficult to access each ontology source separately, map their contents to research data, and much of this effort is being replicated across different research groups. OntoCAT provides a seamless programming interface to query heterogeneous ontology resources including OLS and BioPortal, as well as user-specified local OWL and OBO files. Each resource is wrapped behind easy to learn Java, Bioconductor/R and REST web service commands enabling reuse and integration of ontology software efforts despite variation in technologies. It is also available as a stand-alone MOLGENIS database and a Google App Engine application. OntoCAT provides a robust, configurable solution for accessing ontology terms specified locally and from remote services, is available as a stand-alone tool and has been tested thoroughly in the ArrayExpress, MOLGENIS, EFO and Gen2Phen phenotype use cases. http://www.ontocat.org.
Full Text Available Abstract Background The combination of mass spectrometry and solution phase amide hydrogen/deuterium exchange (H/D exchange experiments is an effective method for characterizing protein dynamics, and protein-protein or protein-ligand interactions. Despite methodological advancements and improvements in instrumentation and automation, data analysis and display remains a tedious process. The factors that contribute to this bottleneck are the large number of data points produced in a typical experiment, each requiring manual curation and validation, and then calculation of the level of backbone amide exchange. Tools have become available that address some of these issues, but lack sufficient integration, functionality, and accessibility required to address the needs of the H/D exchange community. To date there is no software for the analysis of H/D exchange data that comprehensively addresses these issues. Results We have developed an integrated software system for the automated analysis and representation of H/D exchange data that has been titled "The Deuterator". Novel approaches have been implemented that enable high throughput analysis, automated determination of deuterium incorporation, and deconvolution of overlapping peptides. This has been achieved by using methods involving iterative theoretical envelope fitting, and consideration of peak data within expected m/z ranges. Existing common file formats have been leveraged to allow compatibility with the output from the myriad of MS instrument platforms and peptide sequence database search engines. A web-based interface is used to integrate the components of The Deuterator that are able to analyze and present mass spectral data from instruments with varying resolving powers. The results, if necessary, can then be confirmed, adjusted, re-calculated and saved. Additional tools synchronize the curated calculation parameters with replicate time points, increasing throughput. Saved results can then
As a development team, you want to be productive. You want to write flexible, maintainable web applications. You want to use Ruby and Rails. But can you justify the move away from established platforms such as J2EE? Bruce Tate's From Java to Ruby has the answers, and it expresses them in a language that'll help persuade managers and executives who've seen it all. See when and where the switch makes sense, and see how to make it. If you're trying to adopt Ruby in your organization and need some help, this is the book for you. Based on a decision tree (a concept familiar to managers and executives,) Java to Ruby stays above the low-level technical debate to examine the real benefits and risks to adoption. Java to Ruby is packed with interviews of Ruby customers and developers, so you can see what types of projects are likely to succeed, and which ones are likely to fail. Ruby and Rails may be the answer, but first you need to be sure you're asking the right question. By addressing risk and fitness of purpose, J...
This study is introduced by a literature review of the concept of women's status, and related factors that determine infant and child mortality. Women's status is primarily defined by education, occupation and economic activity, which affect women's decision-making in the home and their independence in larger society. Cluster analysis was used to identify geographical patterns of standardized women's status variables among 20 regencies and 4 municipalities in West Java. Euclidian distances were computed between pairs of regencies across the 13 indicators. Pearson's correlations and multiple regression were used to compare associations between women's status variables and infant and child mortality, after controlling for economic development. Using data from the 1980 census, the study demonstrated large regional variations in women's status in West Java, with higher status in both the household and in society in the south and central highlands than in the north and west. Women's status is closely related to infant and child mortality, independent of the level of development. There was 1 notable exception, the municipality of Bogor, where infant and child mortality were higher than average rates for the cluster of areas with higher women's status. The results suggest that improved education, and increase in age at 1st marriage are key elements for improving the status of women in West Java.
Nierstrasz Oscar; Lungu Mircea
Informed decision making is a critical activity in software development but it is poorly supported by common development environments which focus mainly on low level programming tasks. We posit the need for agile software assessment which aims to support decision making by enabling rapid and effective construction of software models and custom analyses. Agile software assessment entails gathering and exploiting the broader context of software information related to the system at hand as well ...
Macfarlane, P. A.
Students seldom have an opportunity to explore the issues related to the environmental impact of contamination on water resources. With NSF support we have developed the prototype Plume Busters, in which students take on the role of an environmental consultant. The software consists of an interactive, Java application and accompanying HTML linked pages. Following a pipeline spill, the environmental consultant is hired by the pipeline owner to locate the resulting plume created by the spill and remediate the contaminated aquifer at minimum monetary and time cost. The contamination must be removed from the aquifer before it reaches the river and eventually a downstream public water supply. The application simulates movement of a plume from a pipeline break through a shallow alluvial aquifer towards the river upstream from a municipal water supply intake. To locate the plume, the student places observation wells on a gridded map of the study area and the simulation returns the contaminant concentrations at those locations on the appropriate sample dates. Once the plume is located, the student is able to site pumping and injection wells on the map for aquifer remediation using a simple pump-and-treat technique. The simulation then computes the movement of particles to the pumping wells and returns the cumulative mass removed by the production remediation well. Plume Busters also provides teachers with a means to initiate student exploration of a wide range of environmental issues, including (1) source-water assessment and ground-water and wellhead protection zones, (2) the impact of human activities and technology on the hydrosphere and the biosphere, (3) the role of technology in the resolution of environmental issues (4) legal, social, political, and economic implications of environmental issues, and (5) risk assessment resulting from human activities.
Jones Steven JM
Full Text Available Abstract Background Biological data resources have become heterogeneous and derive from multiple sources. This introduces challenges in the management and utilization of this data in software development. Although efforts are underway to create a standard format for the transmission and storage of biological data, this objective has yet to be fully realized. Results This work describes an application programming interface (API that provides a framework for developing an effective biological knowledge ontology for Java-based software projects. The API provides a robust framework for the data acquisition and management needs of an ontology implementation. In addition, the API contains classes to assist in creating GUIs to represent this data visually. Conclusions The Knowledge Discovery Object Model (KDOM API is particularly useful for medium to large applications, or for a number of smaller software projects with common characteristics or objectives. KDOM can be coupled effectively with other biologically relevant APIs and classes. Source code, libraries, documentation and examples are available at http://www.bcgsc.ca/bioinfo/software.
scalable application of cutting edge technologies. 20 4. Responding to changing resources—With likely significant resource reductions the depot...deal with underutilized organic capability while continuing to increase outsourcing of depot workload. In addition the study states that a...the unique organic skills that TYAD could 40 bring to the software sustainment mission could be valuable based on the specific type of software
This note presents the improvements for the OMC software during a 14 month technical student internship at CERN. The goal of the work was to improve existing software in terms of maintainability, features and performance. Significant improvements in stability, speed and overall development process were reached. The main software, a Java GUI at the LHC CCC, run for months without noteworthy problems. The overall running time of the software chain used for optics corrections was reduced from nearly half an hour to around two minutes. This was the result of analysing and improving several involved programs and algorithms.
Klima, Richard E.; Sigmon, Neil P.
The use of the computer, and specifically the mathematics software package Maple, has played a central role in the authors' abstract algebra course because it provides their students with a way to see realistic examples of the topics they discuss without having to struggle with extensive computations. However, Maple does not provide the computer…
A parallel Fortran-MPI (Message Passing Interface) software for numerical inversion of the Laplace transform based on a Fourier series method is developed to meet the need of solving intensive computational problems involving oscillatory water level's response to hydraulic tests in a groundwater environment. The software is a parallel version of ACM (The Association for Computing Machinery) Transactions on Mathematical Software (TOMS) Algorithm 796. Running 38 test examples indicated that implementation of MPI techniques with distributed memory architecture speedups the processing and improves the efficiency. Applications to oscillatory water levels in a well during aquifer tests are presented to illustrate how this package can be applied to solve complicated environmental problems involved in differential and integral equations. The package is free and is easy to use for people with little or no previous experience in using MPI but who wish to get off to a quick start in parallel computing. ?? 2004 Elsevier Ltd. All rights reserved.
Mueller, John Paul
Carlos Renato de Souza Perri
Salagnac , Guillaume
In this thesis, we address the problem of dynamic memory management in real-time embedded Java systems. When programming in C or C++, all memory management is done explicitly by the programmer, inducing numerous execution faults because of hazardous use of memory operations. This greatly increases software development costs, because such errors are very hard to debug. The Java language tackles this problem by offering automatic memory management, thanks to the use of a garbage collector. Howe...
Setiawan, I.; Indarto, S.; Sudarsono; Fauzi I, A.; Yuliyanti, A.; Lintjewas, L.; Alkausar, A.; Jakah
Indonesian active volcanoes extend from Sumatra, Jawa, Bali, Lombok, Flores, North Sulawesi, and Halmahera. The volcanic arc hosts 276 volcanoes with 29 GWe of geothermal resources. Considering a wide distribution of geothermal potency, geothermal research is very important to be carried out especially to tackle high energy demand in Indonesia as an alternative energy sources aside from fossil fuel. Geothermal potency associated with volcanoes-hosted in West Java can be found in the West Java segment of Sunda Arc that is parallel with the subduction. The subduction of Indo-Australian oceanic plate beneath the Eurasian continental plate results in various volcanic products in a wide range of geochemical and mineralogical characteristics. The geochemical and mineralogical characteristics of volcanic and magmatic rocks associated with geothermal systems are ill-defined. Comprehensive study of geochemical signatures, mineralogical properties, and isotopes analysis might lead to the understanding of how large geothermal fields are found in West Java compared to ones in Central and East Java. The result can also provoke some valuable impacts on Java tectonic evolution and can suggest the key information for geothermal exploration enhancement.
de Leeuw, Joshua R; Motz, Benjamin A
Shoaib Mahmood Bhatti
Full Text Available Object persistency is the hot issue in the form of ORM (Object Relational Mapping tools in industry as developers use these tools during software development. This paper presents the performance evaluation of Java based ORM tools. For this purpose, Hibernate, Ebean and TopLinkhave been selected as the ORM tools which are popular and open source. Their performance has been measured from execution point of view. The results show that ORM tools are the good option for the developers considering the system throughput in shorter setbacks and they can be used efficiently and effectively for performing mapping of the objects into the relational dominated world of database, thus creating a hope for a better and well dominated future of this technology.
Full Text Available Pangsa pasar yang semakin berkembang di berbagai bidang usaha khususnya pada jasa, membuat sistem pembukuan penjualan yang belum menggunakan komputer menjadi tidak efektif. Salah satu contoh bidang usaha tersebut adalah usaha rental mobil. Proses pengolahan data transaksi perusahaan tersebut semakin tidak akurat dan lambat seiring dengan meningkatnya transaksi yang dilakukan. Atas dasar tersebut digunakan Sistem Informasi Rental Mobil yang berbasis komputer sehingga lebih cepat dan akurat. Sistem Informasi tersebut dibuat dengan menggunakan bahasa pemrograman Java dan menggunakan database MySQL yang tertanam langsung pada aplikasi. Proses pembuatan dan pengembangan Sistem Informasi Rental Mobil ini menggunakan metode SDLC (Software Development Life Cycle model air terjun. Hasil dari perancangan aplikasi ini adalah suatu aplikasi desktop yang dapat memudahkan pengguna dalam pencarian mobil yang sedang tersedia, penagihan pembayaran dan pengembalian mobil jika batas waktu pengembalian sudah tiba.
Crawford, J.; Hayward, M.; Harris, F.; Domel, R.
At the Australian Nuclear Science and Technology Organisation (ANSTO) a model is being developed to determine critical parameters affecting radioactive doses to humans following a release of radionuclides into the atmosphere. Java programming language was chosen because of the Graphical User Interface (GUI) capabilities and its portability across computer platforms, which were a requirement for the application, called RadCon. The mathematical models are applied over the 2D region, performing time varying calculations of dose to humans for each grid point, according to user selected options. The information combined includes: two dimensional time varying air and ground concentrations, transfer factors from soil to plant, plant to animal, plant to humans, plant interception factors to determine amount of radionuclide on plant surfaces, dosimetric data, such as dose conversion factors and user defined parameters, e.g. soil types, lifestyle, diet of animals and humans. Details of the software requirements, pathway parameters and implementation of RadCon are given
Deen, Robert G.; Levoe, Steven R.
This library, written in Java, supports input and output of images and metadata (labels) in the VICAR, PDS image, and ISIS-2 and ISIS-3 file formats. Three levels of access exist. The first level comprises the low-level, direct access to the file. This allows an application to read and write specific image tiles, lines, or pixels and to manipulate the label data directly. This layer is analogous to the C-language "VICAR Run-Time Library" (RTL), which is the image I/O library for the (C/C++/Fortran) VICAR image processing system from JPL MIPL (Multimission Image Processing Lab). This low-level library can also be used to read and write labeled, uncompressed images stored in formats similar to VICAR, such as ISIS-2 and -3, and a subset of PDS (image format). The second level of access involves two codecs based on Java Advanced Imaging (JAI) to provide access to VICAR and PDS images in a file-format-independent manner. JAI is supplied by Sun Microsystems as an extension to desktop Java, and has a number of codecs for formats such as GIF, TIFF, JPEG, etc. Although Sun has deprecated the codec mechanism (replaced by IIO), it is still used in many places. The VICAR and PDS codecs allow any program written using the JAI codec spec to use VICAR or PDS images automatically, with no specific knowledge of the VICAR or PDS formats. Support for metadata (labels) is included, but is format-dependent. The PDS codec, when processing PDS images with an embedded VIAR label ("dual-labeled images," such as used for MER), presents the VICAR label in a new way that is compatible with the VICAR codec. The third level of access involves VICAR, PDS, and ISIS Image I/O plugins. The Java core includes an "Image I/O" (IIO) package that is similar in concept to the JAI codec, but is newer and more capable. Applications written to the IIO specification can use any image format for which a plug-in exists, with no specific knowledge of the format itself.
Torgersen, Mads; Hansen, Christian Plesner; Ernst, Erik
, by using â€˜?â€™ to denote unspecified type arguments. Thus they essentially unify the distinct families of classes that parametric polymorphism introduces. Wildcards are implemented as part of the addition of generics to the JavaTM programming language, and is thus deployed world-wide as part...... of the reference implementation of the Java compiler javac available from Sun Microsystems, Inc. By providing a richer type system, wildcards allow for an improved type inference scheme for polymorphic method calls. Moreover, by means of a novel notion of wildcard capture, polymorphic methods can be used to give...... symbolic names to unspecified types, in a manner similar to the â€œopenâ€� construct known from existential types. Wildcards show up in numerous places in the Java Platform APIs of the newest release, and some of the examples in this paper are taken from these APIs....
Dos Reis, Anthony J
Broad in scope, involving theory, the application of that theory, and programming technology, compiler construction is a moving target, with constant advances in compiler technology taking place. Today, a renewed focus on do-it-yourself programming makes a quality textbook on compilers, that both students and instructors will enjoy using, of even more vital importance. This book covers every topic essential to learning compilers from the ground up and is accompanied by a powerful and flexible software package for evaluating projects, as well as several tutorials, well-defined projects, and tes
Charland, Philippe; Dessureault, Dany; Ouellet, David; Lizotte, Michel
.... One approach to deal with this problem is information hiding. This technical memorandum presents a prototype which implements this technique to reverse engineer dynamic models from Java software systems...
Malabarba, Scott; Pandey, Raju; Gragg, Jeff; Barr, Earl; Barnes, J. F
.... In this paper we present an approach for supporting dynamic evolution of Java programs. In this approach, Java programs can evolve by changing their components, namely classes, during their execution...
Filled with practical, step-by-step instructions and clear explanations for the most important and useful tasks. This book takes a hands-on approach to Java-based password hashing and authentication, detailing advanced topics in a recipe format.This book is ideal for developers new to user authentication and password security, and who are looking to get a good grounding in how to implement it in a reliable way.It's assumed that the reader will have some experience in Java already, as well as being familiar with the basic idea behind user authentication.
Ames, Troy; Koons, Lisa; Sall, Ken; Warsaw, Craig
Traditionally, instrument command and control systems have been highly specialized, consisting mostly of custom code that is difficult to develop, maintain, and extend. Such solutions are initially very costly and are inflexible to subsequent engineering change requests, increasing software maintenance costs. Instrument description is too tightly coupled with details of implementation. NASA Goddard Space Flight Center is developing a general and highly extensible framework that applies to any kind of instrument that can be controlled by a computer. The software architecture combines the platform independent processing capabilities of Java with the power of the Extensible Markup Language (XML), a human readable and machine understandable way to describe structured data. A key aspect of the object-oriented architecture is software that is driven by an instrument description, written using the Instrument Markup Language (IML). ]ML is used to describe graphical user interfaces to control and monitor the instrument, command sets and command formats, data streams, and communication mechanisms. Although the current effort is targeted for the High-resolution Airborne Wideband Camera, a first-light instrument of the Stratospheric Observatory for Infrared Astronomy, the framework is designed to be generic and extensible so that it can be applied to any instrument.
Cheng Weifeng; Li Zheng; Chen Zhiqiang; Zhang Li; Gao Wenhuan
The acquisition and processing of radiation image plays an important role in modern application of civil nuclear technology. The author analyzes the rationale of Java image processing technology which includes Java AWT, Java 2D and JAI. In order to demonstrate applicability of Java technology in field of image processing, examples of application of JAI technology in processing of radiation images of large container have been given
possible system attacks. by Ron Greenfield and Dr. Charley Tichenor Enforcing Static Program Properties to Enable Safety-Critical Use of Java Software...Assurance by Ron Greenfield and Dr. Charley Tichenor, and Dr. Kelvin Nilsen’s Enforcing Static Program Properties in Safety-Critical Java Software Components...01&lang=en>. 5. Shakespeare, William. The Tempest. 6. Intel. “How Chips are Made.” 2008 <www.intel.com/ education /making chips/preparation.htm>. 7
.... The third tier maintains the database management systems. Java servlets and Java provide programmers platform and operating system independent, multi-threaded, object oriented, secure and mobile means to create dynamic content on the web...
C.P.T. de Gouw (Stijn); F.S. de Boer (Frank)
htmlabstractTim Peters developed the Timsort hybrid sorting algorithm in 2002. TimSort was first developed for Python, a popular programming language, but later ported to Java (where it appears as java.util.Collections.sort and java.util.Arrays.sort). TimSort is today used as the default sorting
Discussion of the portability of educational software focuses on the software design and development process. Topics discussed include levels of portability; the user-computer dialog; software engineering principles; design techniques for student performance records; techniques of courseware programing; and suggestions for further research and…
Horton, Matthew; Bodenhausen, Natacha; Bergelson, Joy
We have created a suite of Java-based software to better provide taxonomic assignments to DNA sequences. We anticipate that the program will be useful for protistologists, virologists, mycologists and other microbial ecologists. The program relies on NCBI utilities including the BLAST software and Taxonomy database and is easily manipulated at the command-line to specify a BLAST candidate's query-coverage or percent identity requirements; other options include the ability to set minimal consensus requirements (%) for each of the eight major taxonomic ranks (Domain, Kingdom, Phylum, ...) and whether to consider lower scoring candidates when the top-hit lacks taxonomic classification.
Jensen, Simon Holm; Møller, Anders; Thiemann, Peter
Korsholm, Stephan Erbs
This paper introduces a Java execution environment with the capability for storing constant heap data in Flash, thus saving valuable RAM. The extension is motivated by the structure of three industrial applications which demonstrate the need for storing constant data in Flash on small embedded...
Bringula, Rex P.; Manabat, Geecee Maybelline A.; Tolentino, Miguel Angelo A.; Torres, Edmon L.
This descriptive study determined which of the sources of errors would predict the errors committed by novice Java programmers. Descriptive statistics revealed that the respondents perceived that they committed the identified eighteen errors infrequently. Thought error was perceived to be the main source of error during the laboratory programming…
Kirkegaard, Christian; Møller, Anders
We present an approach for statically reasoning about the behavior of Web applications that are developed using Java Servlets and JSP. Specifically, we attack the problems of guaranteeing that all output is well-formed and valid XML and ensuring consistency of XHTML form fields and session state...
Helke, Steffen; Kammüunietd kller, Florian; Probst, Christian W.
Refactoring means that a program is changed without changing its behaviour from an observer's point of view. Does the change of behaviour also imply that the security of the program is not affected by the changes? Using Myers and Liskov's distributed information flow control model DLM and its Java...
A set of Java classes was written for variogram modeling to support research for US EPA's Regional Vulnerability Assessment Program (ReVA). The modeling objectives of this research program are to use conceptual programming tools for numerical analysis for regional risk assessm...
Levert analysed the dualistic character of the Java sugar industry (entailing the cultivation of sugar-cane on peasant farms). The significance and use of labour was discussed as a factor of production in indigenous societies. A historical analysis was presented on the use of native labour during
A historical review was given of the development of rice cultivation in Java, of the influence of the Netherlands colonial government on the agricultural methods by advice before and after local research, and of the development of field trial techniques and the organization of systematic research.
Programs contain bugs. Finding program bugs is important, especially in situations where safety and security of a program is required. This thesis proposes a number of analysis methods for enforcing the absence of such bugs. In the first part of the thesis the Java Modeling Language (JML) is the
Ayers, G.P.; Gillett, R.W.; Ginting, N.; Hopper, M.; Selleck, P.W.; Tapper, N.
Wet-only rainwater composition on a weekly basis was determined at four sites in West Java, Indonesia, from June 1991 to June 1992. Three sites were near the extreme western end of Java, surrounding a coal-fired power station at Suralaya. The fourth site was ∼ 100 km to the east in the Indonesian capital, Jakarta. Over the 12 months study period wet deposition of sulfate at the three western sites varied between 32-46 meq m -2 while nitrate varied between 10-14 meq m -2 . Wet deposition at the Jakarta site was systematically higher, at 56 meq m -2 for sulfate and 20 meq m -2 for nitrate. Since sulfate and nitrate wet deposition fluxes in the nearby and relatively unpopulated regions of typical Australia are both only ∼ 5 meq m -2 anthropogenic emissions of S and N apparently cause significant atmospheric acidification in Java. It is possible that total acid deposition fluxes (of S and N) in parts of Java are comparable with those responsible for environmental degradation in acid-sensitive parts of Europe and North America. 19 refs., 3 tabs
Dr. P. N. van Kampen offered some bats to our Museum, all from the neighborhood of Batavia, Java. Among them is a Taphozous, an adult male, with a radiometacarpal pouch and a gular sac. Among the very few Taphozous-species known from the East Indian Region, there only is a single one, presenting
Graaff, de J.; Wiersum, K.F.
In a recent article (Diemont et al., 1991) about erosion on Java, it has been postulated that low inputs, not surface erosion, is the main cause of low productivity of upland food crops on this island. In this article it is argued that this hypothesis is too simple. An analysis of empirical field
Bakhuizen van den Brink, R.C.
Koorders, Fl. v. Tjibodas 2 (1923) 32—46; Hochreutiner in Candollea 2 (1924—1926) 336—359; Ochse, Indische Groenten (1931) 719—722; Backer, Onkruidfl. Java Suiker (1930) 203—209; Aimshoff in Blumea 5 (1942—1945) 515—517. Miss Dr G. J. Amshoff started the revision of the Javanese Urticaceae, but left
Thomsen, Bent; Luckow, Kasper Søe; Bøgholm, Thomas
This paper introduces Safety Critical Java (SCJ) and argues its readiness for robotics programming. We give an overview of the work done at Aalborg University and elsewhere on SCJl, some of its implementations in the form of the JOP, FijiVM and HVM and some of the tools, especially WCA, Teta...
Mr. Edward Jacobson from Semarang (Java), one of the zealed correspondents of our Museum, communicated me the other day some observations made by himself on living animals. Especially of a high scientific interest seemed to me what he wrote concerning the habits and behavior of a specimen of the
Junghuhn führte in seinem Werke über Java nur einen einzigen Wirbelthierrest, Carcharias megalodon, an (7, IV, pag. 97); es war ihm nicht gelungen bei seinem ersten Aufenthalte auf der Insel Reste von Säugethieren zu finden, so eifrig er auch darnach in den Höhlen des Tertiaergebirges suchte (7, IV,
Aus Java waren bisher 8 Arten bekannt, nämlich Palingenia javanica Etn., Palingenia tenera Etn., Rhoënanthus speciosus Etn., Thalerosphyrus determinatus Walk. (alle durch Eaton, Rev. Monogr. Ephemeridae, genannt), Compsoneuria spectabilis Etn., Caenis nigropunctata Klap., Pseudocloëon Kraepelini
Huizing, C.; Kuiper, R.; Luijten, C.A.A.M.; Vandalon, V.; Helfert, M.; Martins, M.J.; Cordeiro, J.
We provide an explicit, consistent, execution model for OO programs, specifically Java, together with a tool that visualizes the model This equips the student with a model to think and communicate about OO programs. Especially for an e-learning situation this is significant. Firstly, such a model
Molecule-oriented programming is introduced as a programming style carrying some perspective for Java. A sequence of examples is provided. Supporting the development of the molecule-oriented programming style several matters are introduced and developed: profile classes allowing the representation
Holland, J.V.; Michelsen, R.E.; Powell, D.R.; Upton, S.C.; Thompson, D.R.
The traditional process for developing large-scale simulations is cumbersome, time consuming, costly, and in some cases, inadequate. The topics of software components and component-based software engineering are being explored by software professionals in academic and industrial settings. A component is a well-delineated, relatively independent, and replaceable part of a software system that performs a specific function. Many researchers have addressed the potential to derive a component-based approach to simulations in general, and a few have focused on military simulations in particular. In a component-based approach, functional or logical blocks of the simulation entities are represented as coherent collections of components satisfying explicitly defined interface requirements. A simulation is a top-level aggregate comprised of a collection of components that interact with each other in the context of a simulated environment. A component may represent a simulation artifact, an agent, or any entity that can generated events affecting itself, other simulated entities, or the state of the system. The component-based approach promotes code reuse, contributes to reducing time spent validating or verifying models, and promises to reduce the cost of development while still delivering tailored simulations specific to analysis questions. The Integrated Virtual Environment for Simulation (IVES) is a composition-centered framework to achieve this potential. IVES is a Java implementation of simulation composition concepts developed at Los Alamos National Laboratory for use in several application domains. In this paper, its use in the military domain is demonstrated via the simulation of dismounted infantry in an urban environment.
Catalin BOJA; Adrian VISOIU
The paper describes the main techniques used in development of computer antivirus software applications. For this particular category of software, are identified and defined optimum criteria that helps determine which solution is better and what are the objectives of the optimization process. From the general viewpoint of software optimization are presented methods and techniques that are applied at code development level. Regarding the particularities of antivirus software, the paper analyze...
Moy , Christophe; Raulet , Mickaël
International audience; The design of Software Defined Radio (SDR) equipments (terminals, base stations, etc.) is still very challenging. We propose here a design methodology for ultra-fast prototyping on heterogeneous platforms made of GPPs (General Purpose Processors), DSPs (Digital Signal Processors) and FPGAs (Field Programmable Gate Array). Lying on a component-based approach, the methodology mainly aims at automating as much as possible the design from an algorithmic validation to a mul...
E-learning materials development is typically acknowledged as an expensive, complicated, and lengthy process, often producing materials that are of low quality and difficult to adaptand maintain. It has always been a challenge to identify proper e-learning materials that can be reused at a reasonable cost and effort. In this paper, software engineering reuse principlesare applied to e-learning materials development process. These principles are then applied and implemented in a prototype that...
Maxensius Tri Sambodo
Java-Bali power system dominates the national installed capacity and will contribute to about 76% of the national CO2 emissions from the electricity sector in the future. Thus, minimizing CO2 emission from the Java-Bali system can help Indonesia to reduce the national CO2 emissions level. We apply optimization approach to investigate this problem by including carbon tax into the cost function. We analyzed data based on electricity generating system in 2008. In general the optimization showed ...
Paterson, Trevor; Law, Andy
The Ensembl Project provides release-specific Perl APIs for efficient high-level programmatic access to data stored in various Ensembl database schema. Although Perl scripts are perfectly suited for processing large volumes of text-based data, Perl is not ideal for developing large-scale software applications nor embedding in graphical interfaces. The provision of a novel Java API would facilitate type-safe, modular, object-orientated development of new Bioinformatics tools with which to access, analyse and visualize Ensembl data. The JEnsembl API implementation provides basic data retrieval and manipulation functionality from the Core, Compara and Variation databases for all species in Ensembl and EnsemblGenomes and is a platform for the development of a richer API to Ensembl datasources. The JEnsembl architecture uses a text-based configuration module to provide evolving, versioned mappings from database schema to code objects. A single installation of the JEnsembl API can therefore simultaneously and transparently connect to current and previous database instances (such as those in the public archive) thus facilitating better analysis repeatability and allowing 'through time' comparative analyses to be performed. Project development, released code libraries, Maven repository and documentation are hosted at SourceForge (http://jensembl.sourceforge.net).
With more than 700,000 copies sold to date, Java ina Nutshellfrom O'Reilly is clearly the favorite resource amongst the legion ofdevelopers and programmers using Java technology. And now, with therelease of the 5.0 version of Java, O'Reilly has given the book thatdefined the "in a Nutshell" category another impressive tune-up. In this latest revision, readers will find Java in aNutshell,5th Edition, does more than just cover the extensive changes implicit in5.0, the newest version of Java. It's undergone a complete makeover--inscope, size, and type of coverage--in order to more closely meet
Java EE 7 Recipes takes an example-based approach in showing how to program Enterprise Java applications in many different scenarios. Be it a small-business web application, or an enterprise database application, Java EE 7 Recipes provides effective and proven solutions to accomplish just about any task that you may encounter. You can feel confident using the reliable solutions that are demonstrated in this book in your personal or corporate environment. The solutions in Java EE 7 Recipes are built using the most current Java Enterprise specifications, including EJB 3.2, JSF 2.2, Expression La
Qi, Da; Zhang, Huaizhong; Fan, Jun; Perkins, Simon; Pisconti, Addolorata; Simpson, Deborah M; Bessant, Conrad; Hubbard, Simon; Jones, Andrew R
The mzQuantML standard has been developed by the Proteomics Standards Initiative for capturing, archiving and exchanging quantitative proteomic data, derived from mass spectrometry. It is a rich XML-based format, capable of representing data about two-dimensional features from LC-MS data, and peptides, proteins or groups of proteins that have been quantified from multiple samples. In this article we report the development of an open source Java-based library of routines for mzQuantML, called the mzqLibrary, and associated software for visualising data called the mzqViewer. The mzqLibrary contains routines for mapping (peptide) identifications on quantified features, inference of protein (group)-level quantification values from peptide-level values, normalisation and basic statistics for differential expression. These routines can be accessed via the command line, via a Java programming interface access or a basic graphical user interface. The mzqLibrary also contains several file format converters, including import converters (to mzQuantML) from OpenMS, Progenesis LC-MS and MaxQuant, and exporters (from mzQuantML) to other standards or useful formats (mzTab, HTML, csv). The mzqViewer contains in-built routines for viewing the tables of data (about features, peptides or proteins), and connects to the R statistical library for more advanced plotting options. The mzqLibrary and mzqViewer packages are available from https://code.google.com/p/mzq-lib/. © 2015 The Authors. PROTEOMICS Published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.
Angstadt, R.; Borcherding, F.; Johnson, M.E.; Moreira, L.
This paper describes a system which uses a commercial spreadsheet program and commercial hardware on an IBM PC to develop and test a track finding system for the D Zero Level 1 scintillating Fiber Trigger. The trigger system resides in a VME crate. This system allows the user to generate test input, write the pattern to the hardware simulate the results in software, read the hardware result: compare the results and inform the user of any differences
Sarah, D.; Soebowo, E.
Cities on the north coast of Java such as Jakarta, Semarang, Pekalongan, and Surabaya are vulnerable to environmental pressures such as sea level change and land subsidence. Land subsidence can be caused by natural and anthropogenic processes. Geologically, the north coastal plain of Java consists of unconsolidated Holocene alluvial deposit. The recent alluvial deposit is prone to compaction, and further aggravated by anthropogenic forces such as groundwater extraction and land development. Understanding the complex interaction of natural and manmade factors is essential to establish mitigation strategy. Although the impacts of land subsidence are widely felt, many do not realize that land subsidence is taking place. This paper presents a brief review of the land subsidence threats in the North coast of Java and proposes a recommendation for suitable management response.
The arrival of commodity hardware configurations with performance rivaling that offered by RISC workstations is resulting in important advances in the state of the art of building and running very large scalable clusters at "mass market" pricing levels. However, cluster middleware layers are still considered as static infrastructures which are not ready for evolution. In this paper, we claim that middleware layers based on both agent and Java technologies offer new opportunities to support clusters where services can be dynamically added, removed and reconfigured. To support this claim, we present the Java Management Extensions (JMX), a new Java agent based technology, and its application to implement two disjoint cluster management middleware services (a remote reboot service and a distributed infrastructure for collecting Log events) which share a unique agent-based infrastructure.
Benjamin A. Allan
Full Text Available In high-performance scientific software development, the emphasis is often on short time to first solution. Even when the development of new components mostly reuses existing components or libraries and only small amounts of new code must be created, dealing with the component glue code and software build processes to obtain complete applications is still tedious and error-prone. Component-based software meant to reduce complexity at the application level increases complexity to the extent that the user must learn and remember the interfaces and conventions of the component model itself. To address these needs, we introduce Bocca, the first tool to enable application developers to perform rapid component prototyping while maintaining robust software-engineering practices suitable to HPC environments. Bocca provides project management and a comprehensive build environment for creating and managing applications composed of Common Component Architecture components. Of critical importance for high-performance computing (HPC applications, Bocca is designed to operate in a language-agnostic way, simultaneously handling components written in any of the languages commonly used in scientific applications: C, C++, Fortran, Python and Java. Bocca automates the tasks related to the component glue code, freeing the user to focus on the scientific aspects of the application. Bocca embraces the philosophy pioneered by Ruby on Rails for web applications: start with something that works, and evolve it to the user's purpose.
Obcena, Mark Joseph
Humeniuk, Dave; Klawon, Kevin
Under the Terra Harvest Program, the DIA has the objective of developing a universal Controller for the Unattended Ground Sensor (UGS) community. The mission is to define, implement, and thoroughly document an open architecture that universally supports UGS missions, integrating disparate systems, peripherals, etc. The Controller's inherent interoperability with numerous systems enables the integration of both legacy and future UGS System (UGSS) components, while the design's open architecture supports rapid third-party development to ensure operational readiness. The successful accomplishment of these objectives by the program's Phase 3b contractors is demonstrated via integration of the companies' respective plug-'n'-play contributions that include controllers, various peripherals, such as sensors, cameras, etc., and their associated software drivers. In order to independently validate the Terra Harvest architecture, L-3 Nova Engineering, along with its partner, the University of Dayton Research Institute, is developing the Terra Harvest Open Source Environment (THOSE), a Java Virtual Machine (JVM) running on an embedded Linux Operating System. The Use Cases on which the software is developed support the full range of UGS operational scenarios such as remote sensor triggering, image capture, and data exfiltration. The Team is additionally developing an ARM microprocessor-based evaluation platform that is both energy-efficient and operationally flexible. The paper describes the overall THOSE architecture, as well as the design decisions for some of the key software components. Development process for THOSE is discussed as well.
Enough about learning the fundamentals of the intriguing JavaFX platform; it's now time to start implementing visually stunning and dynamic Java-based rich Internet applications (RIAs) for your desktop or mobile front end. This book will show you what the JavaFX platform can really do for Java desktop and mobile front ends. It presents a number of excellent visual effects and techniques that will make any JavaFX application stand out-whether it's animation, multimedia, or a game. The techniques shown in this book are invaluable for competing in today's market, and they'll help set your RIAs ap
Isjwara, F. R. G.; Hasanah, S. N.; Utami, Sri; Suniarti, D. F.
Streptococcus biofilm on tooth surfaces can decrease mouth environment pH, thus causing enamel demineralization that can lead to dental caries. Java Turmeric extract has excellent antibacterial effects and can maintain S. mutans biofilm pH at neutral levels for 4 hours. To analyze the effect of Java Turmeric extract on tooth enamel micro-hardness, the Java Turmeric extract was added on enamel tooth samples with Streptococcus dual species biofilm (S. sanguinis and S. mutans). The micro-hardness of enamel was measured by Knoop Hardness Tester. Results showed that Curcuma xanthorrhiza Roxb. could not maintain tooth enamel surface micro-hardness. It is concluded that Java Turmeric extract ethanol could not inhibit the hardness of enamel with Streptococcus dual species biofilm.
Hijuzaman, O.; Rahayu, A.; Kusnendi
The purpose of this study was to determine and analyze the effect of direct and indirect implementation of Green Supply-Chain Management (GSCM) on the Performance Marketing and Competitiveness Mediation Paper Company in West Java province. Object This research is the paper company that existed in West Java Province, which amounts to 30 companies as well as a sample of research, while variables studied are Variable Green Supply- Chain Management, Company Competitiveness Variable and Variable of Paper Marketing Industry Performance in West Java Province. The method used SEM with Variance Based or Component Based with Software used is SmartPLS 3.0. On this research are identified that no effect of Competitiveness on Marketing Performance in Paper Companies in West Java Province.
Emurian, Henry H.
At the beginning of a Java computer programming course, nine students in an undergraduate class and nine students in a graduate class completed a web-based programmed instruction tutoring system that taught a simple computer program. All students exited the tutor with an identical level of skill, at least as determined by the tutor's required…